Query 004829
Match_columns 728
No_of_seqs 1578 out of 3756
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 13:37:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 1.8E-42 3.8E-47 347.4 28.7 410 216-715 110-519 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 1.9E-42 4.1E-47 347.2 28.6 418 215-722 75-492 (966)
3 KOG1840 Kinesin light chain [C 100.0 2.8E-30 6.1E-35 269.1 47.2 421 218-698 84-505 (508)
4 TIGR00990 3a0801s09 mitochondr 100.0 1.3E-30 2.7E-35 292.9 47.2 421 221-718 126-574 (615)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 8.8E-29 1.9E-33 294.6 47.1 409 218-718 461-869 (899)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 1E-28 2.2E-33 294.1 46.1 408 215-714 492-899 (899)
7 TIGR00990 3a0801s09 mitochondr 100.0 1.3E-28 2.8E-33 276.7 39.4 401 205-674 144-573 (615)
8 KOG2002 TPR-containing nuclear 100.0 3.6E-28 7.8E-33 257.9 38.6 454 208-720 256-750 (1018)
9 PRK11447 cellulose synthase su 100.0 1E-27 2.3E-32 286.5 46.8 423 234-718 159-703 (1157)
10 PRK11447 cellulose synthase su 100.0 9.5E-28 2.1E-32 286.8 46.0 418 227-714 274-739 (1157)
11 KOG1840 Kinesin light chain [C 100.0 2.9E-27 6.4E-32 246.6 41.4 295 424-721 190-485 (508)
12 KOG0547 Translocase of outer m 100.0 5.1E-27 1.1E-31 231.1 32.7 398 220-676 113-570 (606)
13 KOG2002 TPR-containing nuclear 100.0 3.9E-25 8.5E-30 235.1 38.8 434 210-716 152-594 (1018)
14 PRK15174 Vi polysaccharide exp 100.0 8.1E-25 1.8E-29 244.9 42.5 362 269-704 45-410 (656)
15 PRK15174 Vi polysaccharide exp 100.0 4.5E-25 9.8E-30 246.9 39.0 339 312-721 45-387 (656)
16 PRK10049 pgaA outer membrane p 99.9 7.7E-24 1.7E-28 242.2 46.9 438 216-720 9-461 (765)
17 KOG0547 Translocase of outer m 99.9 8.6E-24 1.9E-28 208.5 33.1 389 266-714 115-565 (606)
18 PRK09782 bacteriophage N4 rece 99.9 2.3E-22 4.9E-27 229.7 43.0 447 207-720 63-711 (987)
19 KOG2003 TPR repeat-containing 99.9 8.9E-24 1.9E-28 205.8 23.1 423 221-718 200-692 (840)
20 PRK10049 pgaA outer membrane p 99.9 6.1E-22 1.3E-26 226.6 42.1 402 212-673 39-457 (765)
21 KOG1130 Predicted G-alpha GTPa 99.9 2.3E-22 4.9E-27 194.1 24.3 329 272-617 23-371 (639)
22 KOG1130 Predicted G-alpha GTPa 99.9 2E-22 4.4E-27 194.4 23.0 331 357-703 23-373 (639)
23 PRK14574 hmsH outer membrane p 99.9 1.3E-19 2.9E-24 203.0 47.1 443 211-721 23-519 (822)
24 KOG1126 DNA-binding cell divis 99.9 1.3E-22 2.8E-27 208.8 20.4 310 352-725 318-629 (638)
25 KOG2003 TPR repeat-containing 99.9 1.5E-21 3.2E-26 190.5 26.1 407 218-700 233-709 (840)
26 KOG0548 Molecular co-chaperone 99.9 4.3E-20 9.3E-25 185.8 36.6 392 223-697 3-472 (539)
27 PRK11788 tetratricopeptide rep 99.9 2.9E-20 6.4E-25 198.6 37.8 308 352-713 36-345 (389)
28 PRK09782 bacteriophage N4 rece 99.9 1.1E-20 2.3E-25 216.1 36.2 378 238-702 357-761 (987)
29 PRK11788 tetratricopeptide rep 99.9 3.5E-20 7.5E-25 198.0 37.9 308 311-671 37-346 (389)
30 KOG1126 DNA-binding cell divis 99.9 9.2E-22 2E-26 202.6 23.5 301 310-672 318-620 (638)
31 KOG1155 Anaphase-promoting com 99.9 2.8E-19 6.1E-24 175.9 38.5 306 312-671 230-535 (559)
32 KOG1155 Anaphase-promoting com 99.9 2E-19 4.3E-24 177.0 32.8 373 266-716 164-537 (559)
33 KOG1173 Anaphase-promoting com 99.9 2.4E-19 5.2E-24 180.9 32.4 438 225-719 19-522 (611)
34 KOG1173 Anaphase-promoting com 99.9 4.3E-19 9.4E-24 179.1 33.0 384 224-673 51-519 (611)
35 KOG0548 Molecular co-chaperone 99.9 7.7E-19 1.7E-23 176.8 34.0 375 270-720 6-460 (539)
36 KOG2076 RNA polymerase III tra 99.9 1.3E-18 2.7E-23 184.9 35.7 393 267-715 140-555 (895)
37 PLN03218 maturation of RBCL 1; 99.9 3.2E-17 6.9E-22 189.1 49.5 414 222-715 370-783 (1060)
38 KOG2076 RNA polymerase III tra 99.9 8.2E-19 1.8E-23 186.3 32.4 355 310-719 140-516 (895)
39 PLN03081 pentatricopeptide (PP 99.8 2.4E-17 5.2E-22 188.4 39.5 266 395-716 261-558 (697)
40 PLN03081 pentatricopeptide (PP 99.8 1.3E-17 2.9E-22 190.6 35.8 374 223-671 124-556 (697)
41 KOG0624 dsRNA-activated protei 99.8 9.3E-17 2E-21 152.2 34.9 321 262-630 34-370 (504)
42 KOG4162 Predicted calmodulin-b 99.8 8.6E-17 1.9E-21 168.3 38.1 434 221-719 322-787 (799)
43 PRK14574 hmsH outer membrane p 99.8 4.9E-17 1.1E-21 182.5 38.9 401 263-720 31-484 (822)
44 PRK04841 transcriptional regul 99.8 6.8E-16 1.5E-20 183.3 50.8 420 223-675 342-763 (903)
45 PLN03218 maturation of RBCL 1; 99.8 1.4E-15 2.9E-20 175.7 47.8 344 225-630 440-783 (1060)
46 KOG1174 Anaphase-promoting com 99.8 9.6E-16 2.1E-20 148.9 36.3 426 219-719 40-504 (564)
47 KOG1129 TPR repeat-containing 99.8 5.3E-17 1.1E-21 152.9 24.5 287 216-551 175-462 (478)
48 PLN03077 Protein ECB2; Provisi 99.8 7E-16 1.5E-20 180.8 39.5 406 223-716 254-721 (857)
49 KOG0624 dsRNA-activated protei 99.8 5E-16 1.1E-20 147.3 29.0 320 308-672 37-370 (504)
50 KOG1129 TPR repeat-containing 99.8 1.5E-17 3.3E-22 156.5 18.4 282 361-694 189-472 (478)
51 PRK04841 transcriptional regul 99.8 2.2E-14 4.7E-19 170.5 49.6 421 265-716 340-761 (903)
52 PLN03077 Protein ECB2; Provisi 99.8 3.1E-16 6.7E-21 183.8 33.0 397 224-712 224-651 (857)
53 KOG4162 Predicted calmodulin-b 99.8 1.8E-15 3.9E-20 158.6 33.5 403 215-673 350-784 (799)
54 KOG1174 Anaphase-promoting com 99.7 1.2E-14 2.5E-19 141.5 34.3 290 347-699 228-519 (564)
55 KOG1156 N-terminal acetyltrans 99.7 3.4E-14 7.4E-19 146.2 39.3 439 213-713 32-509 (700)
56 KOG1941 Acetylcholine receptor 99.7 1.1E-14 2.4E-19 139.3 30.7 347 312-673 9-361 (518)
57 KOG0495 HAT repeat protein [RN 99.7 1.9E-14 4E-19 147.6 33.7 367 219-671 513-879 (913)
58 KOG1156 N-terminal acetyltrans 99.7 5.8E-13 1.3E-17 137.3 44.0 401 224-677 77-516 (700)
59 PRK12370 invasion protein regu 99.7 5.3E-15 1.2E-19 163.4 31.6 253 407-716 275-536 (553)
60 PF13429 TPR_15: Tetratricopep 99.7 3.4E-17 7.5E-22 165.6 13.1 266 271-589 13-278 (280)
61 KOG1941 Acetylcholine receptor 99.7 2.5E-14 5.5E-19 136.8 31.4 345 269-630 9-360 (518)
62 KOG0495 HAT repeat protein [RN 99.7 8.9E-14 1.9E-18 142.7 37.4 426 218-718 436-883 (913)
63 PF13429 TPR_15: Tetratricopep 99.7 5.3E-17 1.2E-21 164.3 14.0 268 312-631 11-278 (280)
64 COG3063 PilF Tfp pilus assembl 99.7 2.1E-15 4.5E-20 136.4 21.3 211 471-720 31-241 (250)
65 TIGR00540 hemY_coli hemY prote 99.7 2E-14 4.3E-19 153.1 32.2 309 312-673 87-400 (409)
66 PRK12370 invasion protein regu 99.7 3.8E-15 8.3E-20 164.6 27.7 262 225-545 261-533 (553)
67 TIGR00540 hemY_coli hemY prote 99.7 3.4E-14 7.4E-19 151.3 32.4 318 222-594 84-405 (409)
68 TIGR02521 type_IV_pilW type IV 99.7 5.9E-15 1.3E-19 145.2 24.4 205 429-671 27-231 (234)
69 PRK11189 lipoprotein NlpI; Pro 99.7 7.6E-15 1.7E-19 148.7 25.0 248 406-700 39-286 (296)
70 TIGR02521 type_IV_pilW type IV 99.7 7.2E-15 1.6E-19 144.6 24.3 207 471-716 27-233 (234)
71 COG3063 PilF Tfp pilus assembl 99.7 6.2E-15 1.3E-19 133.4 21.1 207 308-551 34-240 (250)
72 KOG2376 Signal recognition par 99.7 1.5E-12 3.3E-17 132.8 40.4 432 223-721 13-493 (652)
73 COG2956 Predicted N-acetylgluc 99.7 2.2E-13 4.7E-18 129.0 31.8 306 313-671 39-346 (389)
74 COG2956 Predicted N-acetylgluc 99.7 6.9E-14 1.5E-18 132.3 27.5 272 398-718 40-314 (389)
75 cd05804 StaR_like StaR_like; a 99.7 2.3E-13 5E-18 143.4 35.0 332 311-678 8-342 (355)
76 cd05804 StaR_like StaR_like; a 99.7 2.2E-13 4.8E-18 143.5 34.4 338 262-637 2-343 (355)
77 KOG1127 TPR repeat-containing 99.7 9.6E-14 2.1E-18 148.8 31.0 424 215-705 485-987 (1238)
78 PRK11189 lipoprotein NlpI; Pro 99.7 2E-14 4.4E-19 145.6 24.9 222 238-504 41-265 (296)
79 KOG1125 TPR repeat-containing 99.7 3E-15 6.6E-20 152.4 18.5 270 397-705 289-562 (579)
80 KOG0550 Molecular chaperone (D 99.7 1.3E-14 2.7E-19 141.6 21.3 296 269-630 52-350 (486)
81 PRK10747 putative protoheme IX 99.7 1.2E-13 2.6E-18 146.3 30.8 306 222-589 84-391 (398)
82 PRK10747 putative protoheme IX 99.7 4.5E-13 9.9E-18 141.9 34.8 300 312-673 87-391 (398)
83 KOG1127 TPR repeat-containing 99.6 1.8E-13 3.8E-18 146.8 29.1 367 279-710 471-908 (1238)
84 KOG0550 Molecular chaperone (D 99.6 6.3E-14 1.4E-18 136.8 22.2 291 220-550 47-353 (486)
85 KOG1125 TPR repeat-containing 99.6 3.4E-14 7.4E-19 144.9 19.4 270 270-578 289-561 (579)
86 KOG3785 Uncharacterized conser 99.6 1.4E-12 3.1E-17 124.6 28.9 389 221-669 56-487 (557)
87 KOG3785 Uncharacterized conser 99.6 6.5E-12 1.4E-16 120.1 32.9 287 237-593 36-350 (557)
88 KOG1915 Cell cycle control pro 99.6 7.2E-11 1.6E-15 117.4 38.9 429 223-718 74-539 (677)
89 KOG2376 Signal recognition par 99.6 4.5E-11 9.8E-16 122.3 38.0 400 226-668 83-516 (652)
90 PF12569 NARP1: NMDA receptor- 99.5 2.7E-11 5.8E-16 129.3 34.8 320 267-636 5-340 (517)
91 PF12569 NARP1: NMDA receptor- 99.5 4.3E-10 9.4E-15 120.1 39.5 323 221-598 3-344 (517)
92 KOG1915 Cell cycle control pro 99.5 1.8E-09 3.9E-14 107.6 40.0 389 268-716 75-501 (677)
93 PLN02789 farnesyltranstransfer 99.5 2.3E-11 5.1E-16 122.7 25.3 216 435-698 39-268 (320)
94 KOG2300 Uncharacterized conser 99.5 1.2E-08 2.5E-13 102.3 42.3 427 221-668 45-552 (629)
95 TIGR03302 OM_YfiO outer membra 99.4 8.4E-12 1.8E-16 122.9 20.5 184 515-718 30-235 (235)
96 PF14938 SNAP: Soluble NSF att 99.4 8.9E-12 1.9E-16 125.4 20.9 230 392-630 34-266 (282)
97 KOG2300 Uncharacterized conser 99.4 3.9E-08 8.5E-13 98.6 44.5 453 221-700 6-540 (629)
98 TIGR03302 OM_YfiO outer membra 99.4 5.7E-11 1.2E-15 117.0 24.9 195 429-671 29-231 (235)
99 KOG2047 mRNA splicing factor [ 99.4 6.5E-09 1.4E-13 107.5 39.0 321 347-705 345-678 (835)
100 PF14938 SNAP: Soluble NSF att 99.4 7.2E-11 1.6E-15 118.8 23.1 230 350-588 34-266 (282)
101 PLN02789 farnesyltranstransfer 99.4 1.6E-10 3.5E-15 116.7 25.3 210 401-656 45-268 (320)
102 KOG3617 WD40 and TPR repeat-co 99.4 2.9E-08 6.3E-13 105.2 39.8 404 270-718 830-1362(1416)
103 KOG2047 mRNA splicing factor [ 99.3 1E-07 2.2E-12 99.0 40.5 300 348-671 245-614 (835)
104 KOG4340 Uncharacterized conser 99.3 2.5E-08 5.3E-13 93.9 32.4 225 277-542 21-265 (459)
105 PF10345 Cohesin_load: Cohesin 99.3 2.9E-06 6.3E-11 95.1 55.6 475 220-711 57-602 (608)
106 KOG3617 WD40 and TPR repeat-co 99.3 3.1E-08 6.7E-13 104.9 35.4 338 267-670 758-1172(1416)
107 COG3071 HemY Uncharacterized e 99.3 1.3E-08 2.7E-13 100.3 30.4 303 223-590 85-392 (400)
108 COG3071 HemY Uncharacterized e 99.3 9.4E-08 2E-12 94.3 35.3 303 353-714 86-390 (400)
109 PRK14720 transcript cleavage f 99.2 2E-09 4.4E-14 120.0 24.7 150 308-505 30-179 (906)
110 KOG3060 Uncharacterized conser 99.2 2.7E-08 5.9E-13 91.9 27.7 210 407-656 26-238 (289)
111 PRK15179 Vi polysaccharide bio 99.2 8.4E-10 1.8E-14 122.4 21.5 158 487-673 61-218 (694)
112 PRK15359 type III secretion sy 99.2 1.7E-10 3.7E-15 103.0 12.1 126 538-697 13-138 (144)
113 KOG1128 Uncharacterized conser 99.2 1E-08 2.2E-13 108.1 26.1 253 237-552 359-621 (777)
114 KOG4340 Uncharacterized conser 99.2 3.9E-08 8.4E-13 92.6 26.8 377 216-674 38-445 (459)
115 PRK15359 type III secretion sy 99.2 4.3E-10 9.3E-15 100.4 13.0 125 371-529 13-137 (144)
116 PRK15179 Vi polysaccharide bio 99.2 1.3E-09 2.8E-14 121.0 19.4 176 218-424 44-219 (694)
117 PRK10370 formate-dependent nit 99.1 4E-09 8.6E-14 99.5 18.2 125 572-721 52-179 (198)
118 PRK14720 transcript cleavage f 99.1 1.2E-08 2.5E-13 114.1 23.9 236 214-486 23-268 (906)
119 PRK10370 formate-dependent nit 99.1 7.8E-09 1.7E-13 97.5 17.5 153 357-551 22-177 (198)
120 KOG3060 Uncharacterized conser 99.0 2E-07 4.4E-12 86.3 24.5 207 237-485 26-235 (289)
121 COG5010 TadD Flp pilus assembl 99.0 1.7E-08 3.7E-13 94.3 17.8 167 471-670 63-229 (257)
122 KOG1128 Uncharacterized conser 99.0 5.4E-08 1.2E-12 102.7 23.2 222 395-677 400-621 (777)
123 PRK15363 pathogenicity island 99.0 1.1E-08 2.5E-13 89.2 15.2 109 559-688 35-143 (157)
124 PF10345 Cohesin_load: Cohesin 99.0 0.00012 2.6E-09 82.3 56.4 431 263-705 56-554 (608)
125 PF13424 TPR_12: Tetratricopep 99.0 2.3E-09 5E-14 84.8 10.0 76 598-674 2-77 (78)
126 KOG1839 Uncharacterized protei 99.0 7.3E-08 1.6E-12 108.7 24.9 444 239-691 640-1147(1236)
127 COG5010 TadD Flp pilus assembl 99.0 3.4E-08 7.5E-13 92.3 17.8 166 429-627 63-228 (257)
128 KOG0553 TPR repeat-containing 99.0 7E-09 1.5E-13 98.7 13.3 122 516-660 79-200 (304)
129 KOG0553 TPR repeat-containing 99.0 5.2E-09 1.1E-13 99.6 12.1 121 558-702 80-200 (304)
130 PF13424 TPR_12: Tetratricopep 99.0 2.7E-09 5.9E-14 84.3 8.6 77 429-506 1-77 (78)
131 COG2909 MalT ATP-dependent tra 98.9 3.1E-05 6.8E-10 84.5 40.8 341 219-585 344-685 (894)
132 PF13525 YfiO: Outer membrane 98.9 4.2E-07 9.1E-12 86.5 24.1 183 433-663 5-198 (203)
133 CHL00033 ycf3 photosystem I as 98.9 3.1E-08 6.8E-13 91.5 15.9 118 557-687 33-157 (168)
134 TIGR02552 LcrH_SycD type III s 98.9 1.8E-08 3.9E-13 89.5 13.7 111 540-673 5-115 (135)
135 TIGR02552 LcrH_SycD type III s 98.9 1.4E-08 3.1E-13 90.2 12.5 108 597-721 13-120 (135)
136 PF04733 Coatomer_E: Coatomer 98.9 1.5E-08 3.3E-13 101.2 12.5 258 401-718 9-268 (290)
137 PF13525 YfiO: Outer membrane 98.9 4.2E-07 9.1E-12 86.5 21.4 183 266-495 5-198 (203)
138 KOG3616 Selective LIM binding 98.9 2.5E-05 5.4E-10 82.5 35.3 224 434-710 662-907 (1636)
139 PRK15363 pathogenicity island 98.9 6.1E-08 1.3E-12 84.7 13.9 105 430-551 32-136 (157)
140 CHL00033 ycf3 photosystem I as 98.9 3.8E-08 8.2E-13 91.0 13.4 121 471-597 31-151 (168)
141 PRK10866 outer membrane biogen 98.9 8.9E-07 1.9E-11 86.3 23.4 189 432-668 31-237 (243)
142 KOG1585 Protein required for f 98.9 4.4E-06 9.5E-11 77.0 25.8 224 390-625 28-251 (308)
143 KOG1839 Uncharacterized protei 98.8 2.7E-06 5.9E-11 96.4 28.8 398 238-646 680-1144(1236)
144 KOG1585 Protein required for f 98.8 4.1E-06 8.8E-11 77.2 24.6 224 430-667 28-251 (308)
145 PRK10866 outer membrane biogen 98.8 2.9E-06 6.3E-11 82.7 25.8 191 474-713 31-239 (243)
146 KOG3616 Selective LIM binding 98.8 0.0002 4.3E-09 76.0 40.0 295 394-719 662-1028(1636)
147 PF04733 Coatomer_E: Coatomer 98.8 4.5E-08 9.8E-13 97.8 12.8 262 360-686 10-274 (290)
148 KOG2471 TPR repeat-containing 98.8 5.6E-06 1.2E-10 83.5 27.1 407 266-710 100-679 (696)
149 COG2909 MalT ATP-dependent tra 98.8 0.0002 4.3E-09 78.5 40.5 339 263-627 344-685 (894)
150 PRK02603 photosystem I assembl 98.8 5.2E-07 1.1E-11 83.7 18.7 115 556-683 32-153 (172)
151 PLN03088 SGT1, suppressor of 98.7 9.7E-08 2.1E-12 99.1 13.4 113 562-698 5-117 (356)
152 PF09976 TPR_21: Tetratricopep 98.7 7.4E-07 1.6E-11 80.0 17.0 134 223-378 12-145 (145)
153 TIGR02795 tol_pal_ybgF tol-pal 98.7 1.8E-07 4E-12 80.9 12.6 108 602-720 3-110 (119)
154 KOG3081 Vesicle coat complex C 98.7 5E-06 1.1E-10 77.8 22.2 255 401-718 16-274 (299)
155 TIGR02795 tol_pal_ybgF tol-pal 98.7 3E-07 6.5E-12 79.5 13.5 104 560-673 3-106 (119)
156 PF09976 TPR_21: Tetratricopep 98.7 2E-06 4.3E-11 77.1 18.9 123 445-586 23-145 (145)
157 PLN03088 SGT1, suppressor of 98.7 2.1E-07 4.5E-12 96.7 14.2 113 521-656 5-117 (356)
158 PRK02603 photosystem I assembl 98.7 3.1E-07 6.8E-12 85.1 12.9 110 470-592 30-146 (172)
159 KOG0543 FKBP-type peptidyl-pro 98.7 3.1E-07 6.7E-12 91.5 12.8 140 563-718 212-358 (397)
160 KOG1070 rRNA processing protei 98.6 1.5E-05 3.2E-10 90.2 25.5 258 206-504 1442-1700(1710)
161 KOG0543 FKBP-type peptidyl-pro 98.6 8.4E-07 1.8E-11 88.5 14.3 137 519-671 209-354 (397)
162 KOG1586 Protein required for f 98.6 3.9E-05 8.5E-10 70.4 23.5 197 364-588 27-224 (288)
163 COG4783 Putative Zn-dependent 98.6 4E-06 8.7E-11 85.3 19.0 152 430-630 303-454 (484)
164 COG4783 Putative Zn-dependent 98.6 2E-06 4.4E-11 87.5 16.7 148 394-588 307-454 (484)
165 KOG1586 Protein required for f 98.6 1.7E-05 3.8E-10 72.6 20.7 187 525-723 41-232 (288)
166 KOG2471 TPR repeat-containing 98.6 2.1E-06 4.6E-11 86.5 16.3 343 220-585 238-681 (696)
167 PF12895 Apc3: Anaphase-promot 98.6 3.6E-07 7.8E-12 73.2 9.0 84 571-669 1-84 (84)
168 COG3898 Uncharacterized membra 98.6 0.0007 1.5E-08 67.1 32.8 301 229-588 91-392 (531)
169 PF12895 Apc3: Anaphase-promot 98.6 4.1E-07 8.8E-12 72.9 8.9 83 279-377 2-84 (84)
170 PF13414 TPR_11: TPR repeat; P 98.6 4.1E-07 8.9E-12 69.8 8.6 64 601-672 3-67 (69)
171 PRK10803 tol-pal system protei 98.6 1.3E-06 2.8E-11 85.7 14.1 108 602-720 143-251 (263)
172 PF12688 TPR_5: Tetratrico pep 98.5 1.8E-06 3.8E-11 73.2 12.3 103 602-714 2-104 (120)
173 cd00189 TPR Tetratricopeptide 98.5 8.4E-07 1.8E-11 72.8 10.4 98 603-717 2-99 (100)
174 KOG3081 Vesicle coat complex C 98.5 4.6E-05 9.9E-10 71.6 22.4 249 360-671 17-269 (299)
175 PF13414 TPR_11: TPR repeat; P 98.5 5.8E-07 1.3E-11 68.9 8.1 65 310-382 4-69 (69)
176 PF12688 TPR_5: Tetratrico pep 98.5 5.3E-06 1.1E-10 70.3 14.3 98 561-671 3-103 (120)
177 KOG1070 rRNA processing protei 98.5 0.00015 3.3E-09 82.4 29.0 222 327-588 1442-1663(1710)
178 cd00189 TPR Tetratricopeptide 98.5 1.1E-06 2.3E-11 72.1 9.2 97 435-548 2-98 (100)
179 COG5159 RPN6 26S proteasome re 98.5 0.00014 2.9E-09 68.8 23.6 302 355-671 7-313 (421)
180 PRK10803 tol-pal system protei 98.4 5.9E-06 1.3E-10 81.1 15.6 104 560-673 143-247 (263)
181 COG1729 Uncharacterized protei 98.4 1.9E-06 4.2E-11 82.0 11.7 105 604-719 144-248 (262)
182 COG4785 NlpI Lipoprotein NlpI, 98.4 1.4E-05 3E-10 72.4 16.2 203 391-630 63-266 (297)
183 KOG1463 26S proteasome regulat 98.4 0.00014 3.1E-09 70.4 24.0 300 356-671 9-315 (411)
184 COG3898 Uncharacterized membra 98.4 0.0014 3E-08 65.1 30.8 301 314-672 89-392 (531)
185 PF13432 TPR_16: Tetratricopep 98.4 7.8E-07 1.7E-11 67.3 6.8 60 606-673 2-61 (65)
186 COG0457 NrfG FOG: TPR repeat [ 98.4 0.0013 2.8E-08 64.1 30.5 229 364-630 36-265 (291)
187 COG4785 NlpI Lipoprotein NlpI, 98.3 0.00011 2.3E-09 66.8 19.1 230 429-702 61-292 (297)
188 KOG1464 COP9 signalosome, subu 98.3 0.00014 2.9E-09 68.3 20.4 241 323-573 41-286 (440)
189 COG0457 NrfG FOG: TPR repeat [ 98.3 0.00067 1.5E-08 66.1 26.4 207 475-717 59-267 (291)
190 PF13432 TPR_16: Tetratricopep 98.3 3.8E-06 8.3E-11 63.4 7.4 64 647-719 1-64 (65)
191 PF10300 DUF3808: Protein of u 98.2 0.0024 5.2E-08 68.9 31.2 187 486-695 199-399 (468)
192 KOG4234 TPR repeat-containing 98.2 2.2E-05 4.8E-10 70.2 12.6 117 518-652 95-211 (271)
193 KOG4234 TPR repeat-containing 98.2 2.8E-05 6.1E-10 69.5 13.2 134 563-715 99-233 (271)
194 PRK11906 transcriptional regul 98.2 4.8E-05 1E-09 78.2 16.7 159 312-500 258-432 (458)
195 KOG4555 TPR repeat-containing 98.2 0.00011 2.5E-09 60.8 15.5 122 562-695 46-171 (175)
196 KOG4555 TPR repeat-containing 98.2 4E-05 8.7E-10 63.4 12.9 101 435-548 45-145 (175)
197 PRK15331 chaperone protein Sic 98.2 2E-05 4.3E-10 69.4 11.5 103 553-671 31-133 (165)
198 COG4105 ComL DNA uptake lipopr 98.2 0.00066 1.4E-08 64.3 22.4 187 518-719 34-237 (254)
199 COG4235 Cytochrome c biogenesi 98.2 2.8E-05 6E-10 75.2 13.5 108 597-721 152-262 (287)
200 PRK11906 transcriptional regul 98.2 5.4E-05 1.2E-09 77.8 16.3 165 224-418 257-432 (458)
201 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 3.3E-05 7.2E-10 79.9 14.7 120 565-712 175-294 (395)
202 COG4235 Cytochrome c biogenesi 98.2 7.5E-05 1.6E-09 72.2 15.5 116 559-694 156-274 (287)
203 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 3.7E-05 8E-10 79.5 14.4 120 524-669 175-294 (395)
204 COG5159 RPN6 26S proteasome re 98.1 0.0048 1E-07 58.7 26.5 227 313-551 7-239 (421)
205 PF13512 TPR_18: Tetratricopep 98.1 4.8E-05 1E-09 65.6 12.4 109 601-720 10-133 (142)
206 COG4105 ComL DNA uptake lipopr 98.1 0.00019 4E-09 68.0 17.4 174 311-499 36-228 (254)
207 PRK10153 DNA-binding transcrip 98.1 4.8E-05 1E-09 82.5 15.5 136 394-551 340-486 (517)
208 PRK10153 DNA-binding transcrip 98.1 5E-05 1.1E-09 82.3 15.6 131 311-462 341-482 (517)
209 COG1729 Uncharacterized protei 98.1 4.7E-05 1E-09 72.7 13.3 102 562-673 144-245 (262)
210 PF08631 SPO22: Meiosis protei 98.1 0.0026 5.7E-08 63.8 26.7 256 232-503 3-274 (278)
211 PRK15331 chaperone protein Sic 98.1 3.5E-05 7.6E-10 67.9 11.4 98 308-421 36-133 (165)
212 PF08631 SPO22: Meiosis protei 98.1 0.0059 1.3E-07 61.3 28.7 254 361-629 3-274 (278)
213 KOG1464 COP9 signalosome, subu 98.1 0.00041 8.8E-09 65.2 18.1 242 237-489 41-286 (440)
214 KOG2796 Uncharacterized conser 98.1 0.00059 1.3E-08 63.9 19.0 141 352-507 178-318 (366)
215 PF14559 TPR_19: Tetratricopep 98.1 8.9E-06 1.9E-10 62.1 6.0 67 611-693 1-67 (68)
216 PF13512 TPR_18: Tetratricopep 98.0 0.00013 2.8E-09 62.9 12.9 105 559-673 10-129 (142)
217 COG4700 Uncharacterized protei 98.0 0.00024 5.3E-09 62.9 14.8 122 562-707 92-215 (251)
218 COG4700 Uncharacterized protei 98.0 0.0011 2.3E-08 59.0 18.2 162 359-550 64-225 (251)
219 PF10300 DUF3808: Protein of u 98.0 0.022 4.9E-07 61.5 31.7 188 445-656 200-401 (468)
220 KOG2796 Uncharacterized conser 98.0 0.012 2.7E-07 55.4 25.0 239 268-551 71-319 (366)
221 KOG4648 Uncharacterized conser 97.9 2.7E-05 5.8E-10 75.3 7.7 94 564-673 102-195 (536)
222 KOG2610 Uncharacterized conser 97.9 0.028 6.1E-07 55.0 27.6 165 358-545 110-274 (491)
223 PF13371 TPR_9: Tetratricopept 97.9 5.1E-05 1.1E-09 58.8 7.3 59 607-673 1-59 (73)
224 KOG2041 WD40 repeat protein [G 97.9 0.025 5.3E-07 60.5 28.5 178 311-542 694-876 (1189)
225 KOG0985 Vesicle coat protein c 97.9 0.045 9.7E-07 61.1 31.3 265 312-663 1107-1374(1666)
226 KOG4648 Uncharacterized conser 97.9 8E-05 1.7E-09 72.1 9.5 95 521-630 100-194 (536)
227 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 5E-05 1.1E-09 77.9 8.3 68 597-672 71-141 (453)
228 PF13374 TPR_10: Tetratricopep 97.8 3.2E-05 7E-10 52.3 4.9 41 643-683 2-42 (42)
229 KOG1463 26S proteasome regulat 97.8 0.045 9.7E-07 53.7 32.1 301 313-630 8-316 (411)
230 KOG0985 Vesicle coat protein c 97.8 0.11 2.4E-06 58.2 36.9 231 266-538 1104-1374(1666)
231 PF14559 TPR_19: Tetratricopep 97.8 5.9E-05 1.3E-09 57.5 5.9 67 569-651 1-67 (68)
232 KOG1914 mRNA cleavage and poly 97.8 0.077 1.7E-06 55.5 36.4 103 262-382 16-118 (656)
233 PLN03098 LPA1 LOW PSII ACCUMUL 97.7 9.2E-05 2E-09 76.1 8.3 68 429-504 71-141 (453)
234 PF13371 TPR_9: Tetratricopept 97.7 0.00015 3.2E-09 56.1 7.6 58 565-630 1-58 (73)
235 KOG0890 Protein kinase of the 97.7 0.13 2.9E-06 63.0 34.8 409 227-693 1388-1854(2382)
236 PF02259 FAT: FAT domain; Int 97.7 0.092 2E-06 55.0 31.4 51 598-656 249-305 (352)
237 KOG2610 Uncharacterized conser 97.7 0.072 1.6E-06 52.2 26.1 167 314-502 108-274 (491)
238 PF02259 FAT: FAT domain; Int 97.6 0.082 1.8E-06 55.4 29.3 133 555-699 142-306 (352)
239 KOG4507 Uncharacterized conser 97.6 0.0047 1E-07 64.5 18.3 107 564-690 612-718 (886)
240 PF03704 BTAD: Bacterial trans 97.6 0.0088 1.9E-07 53.6 17.8 126 518-679 6-132 (146)
241 KOG4642 Chaperone-dependent E3 97.5 0.00063 1.4E-08 63.0 9.8 99 563-677 14-112 (284)
242 KOG1550 Extracellular protein 97.5 0.044 9.5E-07 60.8 25.7 281 325-671 228-537 (552)
243 PF04184 ST7: ST7 protein; In 97.5 0.012 2.5E-07 61.1 18.9 205 440-675 175-417 (539)
244 PF04184 ST7: ST7 protein; In 97.5 0.0096 2.1E-07 61.6 18.3 132 227-376 173-320 (539)
245 KOG1914 mRNA cleavage and poly 97.5 0.2 4.3E-06 52.6 42.8 441 214-717 12-503 (656)
246 PF13374 TPR_10: Tetratricopep 97.4 0.00028 6E-09 47.6 5.0 41 601-641 2-42 (42)
247 KOG4642 Chaperone-dependent E3 97.4 0.00081 1.8E-08 62.3 9.2 100 436-552 13-112 (284)
248 COG2976 Uncharacterized protei 97.4 0.023 5.1E-07 51.4 18.0 97 562-672 92-188 (207)
249 KOG0551 Hsp90 co-chaperone CNS 97.4 0.0014 3E-08 63.8 10.9 106 265-383 80-185 (390)
250 KOG1550 Extracellular protein 97.4 0.053 1.2E-06 60.1 24.5 282 239-588 228-538 (552)
251 PF12968 DUF3856: Domain of Un 97.4 0.019 4.1E-07 47.1 15.1 119 560-678 8-135 (144)
252 KOG2053 Mitochondrial inherita 97.4 0.38 8.1E-06 53.7 44.6 231 232-504 19-255 (932)
253 KOG2041 WD40 repeat protein [G 97.4 0.3 6.6E-06 52.6 34.8 166 259-458 688-877 (1189)
254 PF12968 DUF3856: Domain of Un 97.4 0.037 8.1E-07 45.4 16.5 120 517-636 6-135 (144)
255 KOG0551 Hsp90 co-chaperone CNS 97.3 0.0052 1.1E-07 59.9 13.7 110 553-674 75-184 (390)
256 PF09986 DUF2225: Uncharacteri 97.3 0.0057 1.2E-07 58.1 13.4 100 572-672 90-194 (214)
257 PF13281 DUF4071: Domain of un 97.2 0.05 1.1E-06 55.7 20.4 178 433-630 141-334 (374)
258 PF10602 RPN7: 26S proteasome 97.2 0.014 3.1E-07 53.8 15.0 126 455-589 18-143 (177)
259 KOG3783 Uncharacterized conser 97.2 0.39 8.4E-06 50.7 27.3 236 312-588 270-520 (546)
260 PF13281 DUF4071: Domain of un 97.2 0.23 4.9E-06 51.1 24.5 207 446-672 112-334 (374)
261 KOG0545 Aryl-hydrocarbon recep 97.2 0.012 2.6E-07 54.9 13.8 105 560-672 179-293 (329)
262 PF07079 DUF1347: Protein of u 97.2 0.36 7.7E-06 49.7 39.6 142 269-424 9-159 (549)
263 KOG0890 Protein kinase of the 97.2 0.9 1.9E-05 56.3 32.3 359 271-673 1388-1785(2382)
264 KOG0545 Aryl-hydrocarbon recep 97.1 0.013 2.9E-07 54.6 13.4 103 394-504 179-293 (329)
265 PF03704 BTAD: Bacterial trans 97.1 0.031 6.8E-07 50.0 15.9 108 269-384 9-129 (146)
266 PF10602 RPN7: 26S proteasome 97.1 0.025 5.5E-07 52.1 15.0 125 416-548 19-143 (177)
267 PF13428 TPR_14: Tetratricopep 97.0 0.0012 2.7E-08 44.9 4.5 42 602-651 2-43 (44)
268 PF09986 DUF2225: Uncharacteri 97.0 0.0086 1.9E-07 56.9 11.5 100 531-630 90-194 (214)
269 PF06552 TOM20_plant: Plant sp 97.0 0.0083 1.8E-07 53.7 10.1 86 575-676 7-106 (186)
270 COG2976 Uncharacterized protei 96.9 0.081 1.8E-06 48.1 16.3 101 393-505 89-189 (207)
271 KOG4814 Uncharacterized conser 96.9 0.81 1.8E-05 49.1 37.5 106 222-340 354-459 (872)
272 PF13428 TPR_14: Tetratricopep 96.9 0.0024 5.1E-08 43.5 4.9 41 311-359 3-43 (44)
273 KOG2053 Mitochondrial inherita 96.9 1.2 2.5E-05 50.0 41.0 215 210-462 31-255 (932)
274 PF13431 TPR_17: Tetratricopep 96.8 0.00093 2E-08 42.4 2.4 34 623-664 1-34 (34)
275 PF12862 Apc5: Anaphase-promot 96.8 0.028 6E-07 45.8 11.7 81 402-484 7-90 (94)
276 PF00515 TPR_1: Tetratricopept 96.7 0.0044 9.5E-08 39.3 5.1 30 601-630 1-30 (34)
277 PF12862 Apc5: Anaphase-promot 96.6 0.041 8.9E-07 44.7 11.5 83 361-443 8-91 (94)
278 PF05843 Suf: Suppressor of fo 96.6 0.031 6.8E-07 56.1 13.0 136 395-550 3-139 (280)
279 PF13176 TPR_7: Tetratricopept 96.6 0.0062 1.4E-07 39.2 4.9 31 645-675 1-31 (36)
280 PF00515 TPR_1: Tetratricopept 96.5 0.0068 1.5E-07 38.4 4.8 30 433-462 1-30 (34)
281 PF13431 TPR_17: Tetratricopep 96.4 0.0024 5.1E-08 40.5 2.2 33 455-495 1-33 (34)
282 KOG1538 Uncharacterized conser 96.4 0.74 1.6E-05 49.4 21.3 221 354-628 588-831 (1081)
283 PF11817 Foie-gras_1: Foie gra 96.4 1 2.2E-05 44.2 21.8 221 225-459 13-244 (247)
284 KOG1258 mRNA processing protei 96.4 1.8 3.9E-05 46.5 39.3 392 214-657 71-489 (577)
285 COG3118 Thioredoxin domain-con 96.4 0.16 3.5E-06 49.4 15.4 155 522-705 138-292 (304)
286 PF06552 TOM20_plant: Plant sp 96.4 0.017 3.7E-07 51.8 8.1 93 617-719 7-113 (186)
287 PF07719 TPR_2: Tetratricopept 96.4 0.0093 2E-07 37.7 4.9 29 602-630 2-30 (34)
288 PF07719 TPR_2: Tetratricopept 96.3 0.0088 1.9E-07 37.8 4.6 33 518-550 1-33 (34)
289 PF13176 TPR_7: Tetratricopept 96.3 0.011 2.5E-07 38.0 5.0 33 353-385 1-33 (36)
290 KOG1538 Uncharacterized conser 96.3 2.2 4.8E-05 46.0 25.3 152 397-586 674-831 (1081)
291 PF05843 Suf: Suppressor of fo 96.2 0.037 8.1E-07 55.5 10.9 136 561-718 3-139 (280)
292 COG3118 Thioredoxin domain-con 96.2 0.46 9.9E-06 46.4 16.9 132 223-381 135-266 (304)
293 KOG0376 Serine-threonine phosp 96.0 0.0069 1.5E-07 62.4 4.0 110 563-696 8-117 (476)
294 COG0790 FOG: TPR repeat, SEL1 95.9 1.1 2.3E-05 45.5 19.8 169 274-489 49-236 (292)
295 PF00244 14-3-3: 14-3-3 protei 95.8 2 4.3E-05 41.7 21.4 185 478-677 4-203 (236)
296 PF13181 TPR_8: Tetratricopept 95.8 0.027 5.9E-07 35.5 5.0 31 519-549 2-32 (34)
297 KOG0376 Serine-threonine phosp 95.8 0.013 2.8E-07 60.5 4.9 109 521-652 7-115 (476)
298 KOG2581 26S proteasome regulat 95.7 2.8 6.1E-05 42.7 22.1 141 277-423 137-277 (493)
299 PRK14707 hypothetical protein; 95.7 4.8 0.0001 49.7 25.5 379 312-699 834-1223(2710)
300 PF13181 TPR_8: Tetratricopept 95.6 0.029 6.3E-07 35.4 4.7 31 352-382 2-32 (34)
301 COG0790 FOG: TPR repeat, SEL1 95.6 1.5 3.3E-05 44.4 19.9 158 476-671 74-265 (292)
302 PF04910 Tcf25: Transcriptiona 95.6 1.5 3.2E-05 45.6 19.4 152 471-630 36-222 (360)
303 PRK13184 pknD serine/threonine 95.5 7.1 0.00015 45.7 32.1 351 230-628 483-867 (932)
304 PF04910 Tcf25: Transcriptiona 95.5 0.94 2E-05 47.1 17.5 159 214-384 32-226 (360)
305 KOG4322 Anaphase-promoting com 95.5 3.7 7.9E-05 42.3 27.1 185 514-705 269-459 (482)
306 PF11817 Foie-gras_1: Foie gra 95.5 2.9 6.2E-05 41.1 23.1 188 312-501 13-244 (247)
307 KOG3783 Uncharacterized conser 95.4 4.5 9.7E-05 43.1 35.7 227 429-672 263-520 (546)
308 PRK14707 hypothetical protein; 95.4 4.5 9.8E-05 49.9 24.1 382 313-703 751-1143(2710)
309 KOG1258 mRNA processing protei 95.4 4.9 0.00011 43.4 41.3 389 263-719 76-474 (577)
310 KOG4322 Anaphase-promoting com 95.3 4.2 9.1E-05 41.9 29.2 198 467-671 265-470 (482)
311 KOG1308 Hsp70-interacting prot 95.3 0.018 3.8E-07 56.7 3.7 91 400-504 121-211 (377)
312 KOG1308 Hsp70-interacting prot 95.1 0.011 2.3E-07 58.2 1.9 91 566-672 121-211 (377)
313 PF12739 TRAPPC-Trs85: ER-Golg 95.0 2 4.4E-05 45.8 18.8 177 395-591 210-402 (414)
314 PF13174 TPR_6: Tetratricopept 95.0 0.044 9.6E-07 34.2 3.9 32 686-718 1-32 (33)
315 KOG2581 26S proteasome regulat 94.9 5 0.00011 41.0 22.0 142 362-507 137-279 (493)
316 PF04190 DUF410: Protein of un 94.7 4.9 0.00011 39.7 23.4 221 445-701 2-244 (260)
317 PF10579 Rapsyn_N: Rapsyn N-te 94.6 0.33 7.2E-06 37.0 8.1 69 222-297 6-74 (80)
318 PF12739 TRAPPC-Trs85: ER-Golg 94.4 7.3 0.00016 41.6 21.3 178 352-551 209-403 (414)
319 PF10579 Rapsyn_N: Rapsyn N-te 94.3 0.48 1E-05 36.1 8.4 71 312-387 9-79 (80)
320 PF13174 TPR_6: Tetratricopept 94.2 0.086 1.9E-06 32.8 3.9 31 520-550 2-32 (33)
321 KOG4507 Uncharacterized conser 94.2 0.092 2E-06 55.3 5.9 96 225-338 610-705 (886)
322 PF00244 14-3-3: 14-3-3 protei 94.1 6.1 0.00013 38.4 19.6 178 312-505 4-199 (236)
323 KOG4814 Uncharacterized conser 94.1 11 0.00023 41.1 40.7 105 268-383 356-460 (872)
324 PF08424 NRDE-2: NRDE-2, neces 94.0 6.5 0.00014 40.4 19.1 147 428-588 14-183 (321)
325 PF14561 TPR_20: Tetratricopep 93.9 0.26 5.5E-06 39.5 6.9 43 621-671 8-50 (90)
326 PF09613 HrpB1_HrpK: Bacterial 93.9 0.82 1.8E-05 40.6 10.5 87 600-702 9-95 (160)
327 PF04781 DUF627: Protein of un 93.7 0.74 1.6E-05 37.9 9.2 98 565-682 2-110 (111)
328 PF04781 DUF627: Protein of un 93.7 1.1 2.3E-05 37.0 10.0 95 399-504 2-107 (111)
329 PF08424 NRDE-2: NRDE-2, neces 93.7 6.6 0.00014 40.3 18.5 147 471-630 15-183 (321)
330 COG5107 RNA14 Pre-mRNA 3'-end 93.6 10 0.00022 39.4 29.6 212 471-717 298-533 (660)
331 COG5187 RPN7 26S proteasome re 93.4 8.3 0.00018 37.6 18.2 134 367-507 91-224 (412)
332 COG5187 RPN7 26S proteasome re 93.4 4 8.6E-05 39.7 14.7 134 409-550 91-224 (412)
333 PF07079 DUF1347: Protein of u 93.3 12 0.00025 39.1 44.9 142 222-382 6-159 (549)
334 COG4649 Uncharacterized protei 93.3 5.8 0.00013 35.6 16.1 150 440-629 46-195 (221)
335 PF10516 SHNi-TPR: SHNi-TPR; 93.3 0.24 5.1E-06 32.1 4.6 36 644-679 2-37 (38)
336 PF10516 SHNi-TPR: SHNi-TPR; 93.2 0.26 5.6E-06 31.9 4.7 35 602-636 2-36 (38)
337 smart00101 14_3_3 14-3-3 homol 93.1 9.1 0.0002 37.1 23.9 182 478-673 4-201 (244)
338 PF04190 DUF410: Protein of un 92.6 11 0.00025 37.2 26.4 230 321-615 2-242 (260)
339 KOG0687 26S proteasome regulat 92.5 8.4 0.00018 38.3 15.8 129 414-550 85-213 (393)
340 PRK10941 hypothetical protein; 92.5 1.3 2.8E-05 43.8 10.8 82 599-693 179-260 (269)
341 PF04097 Nic96: Nup93/Nic96; 92.4 23 0.00049 40.1 24.6 31 514-544 410-440 (613)
342 KOG0687 26S proteasome regulat 92.4 13 0.00028 37.1 19.7 132 326-464 81-212 (393)
343 KOG0686 COP9 signalosome, subu 92.2 3 6.6E-05 42.5 12.9 105 310-419 151-255 (466)
344 PF11207 DUF2989: Protein of u 92.1 3.8 8.2E-05 38.0 12.4 78 616-705 121-198 (203)
345 COG4649 Uncharacterized protei 92.0 8.8 0.00019 34.5 17.1 149 482-671 46-195 (221)
346 COG3947 Response regulator con 91.9 5.3 0.00012 39.0 13.5 79 602-688 280-358 (361)
347 KOG1497 COP9 signalosome, subu 91.8 15 0.00032 36.5 19.3 111 349-460 101-211 (399)
348 PF08626 TRAPPC9-Trs120: Trans 91.6 42 0.00091 41.4 25.6 155 393-550 242-477 (1185)
349 COG3629 DnrI DNA-binding trans 91.1 4.2 9.2E-05 40.1 12.4 79 600-686 152-230 (280)
350 PF10255 Paf67: RNA polymerase 91.0 2.4 5.3E-05 44.2 11.2 73 268-341 124-196 (404)
351 PF11207 DUF2989: Protein of u 91.0 5.5 0.00012 37.0 12.2 81 278-371 118-198 (203)
352 PF14853 Fis1_TPR_C: Fis1 C-te 90.8 1.4 3.1E-05 31.0 6.6 38 602-647 2-39 (53)
353 PF14853 Fis1_TPR_C: Fis1 C-te 90.8 1.3 2.8E-05 31.2 6.3 37 311-355 3-39 (53)
354 PF09613 HrpB1_HrpK: Bacterial 90.5 2.6 5.7E-05 37.5 9.4 87 431-534 8-94 (160)
355 COG5107 RNA14 Pre-mRNA 3'-end 90.2 26 0.00056 36.6 21.4 233 265-550 301-534 (660)
356 KOG2422 Uncharacterized conser 90.0 23 0.00051 38.2 17.2 175 279-462 251-448 (665)
357 PF08626 TRAPPC9-Trs120: Trans 90.0 8.4 0.00018 47.3 16.5 154 517-673 241-475 (1185)
358 smart00028 TPR Tetratricopepti 89.9 0.38 8.3E-06 29.0 3.0 31 519-549 2-32 (34)
359 KOG0686 COP9 signalosome, subu 89.7 4.4 9.5E-05 41.5 11.3 113 427-545 144-256 (466)
360 TIGR02561 HrpB1_HrpK type III 89.5 3.8 8.2E-05 35.9 9.3 83 603-701 12-94 (153)
361 smart00028 TPR Tetratricopepti 89.4 0.46 1E-05 28.6 3.0 29 602-630 2-30 (34)
362 PF15015 NYD-SP12_N: Spermatog 89.3 5.1 0.00011 41.1 11.4 65 435-507 230-294 (569)
363 KOG3364 Membrane protein invol 89.2 2.1 4.5E-05 36.6 7.4 72 642-721 31-106 (149)
364 KOG2114 Vacuolar assembly/sort 89.1 20 0.00044 40.4 16.6 49 498-548 350-398 (933)
365 PF04053 Coatomer_WDAD: Coatom 89.0 16 0.00034 39.3 15.8 25 520-544 349-373 (443)
366 KOG4014 Uncharacterized conser 88.9 11 0.00024 34.1 11.9 148 373-551 50-237 (248)
367 cd02682 MIT_AAA_Arch MIT: doma 88.8 3.5 7.7E-05 31.4 7.7 51 221-272 5-55 (75)
368 PF10952 DUF2753: Protein of u 88.5 12 0.00027 31.3 11.1 75 604-678 4-85 (140)
369 KOG4563 Cell cycle-regulated h 88.5 3.3 7.2E-05 41.6 9.4 66 309-374 41-106 (400)
370 PF04053 Coatomer_WDAD: Coatom 88.1 8 0.00017 41.5 12.9 159 231-459 270-428 (443)
371 KOG2561 Adaptor protein NUB1, 87.9 25 0.00055 36.5 15.2 119 222-341 163-299 (568)
372 KOG0128 RNA-binding protein SA 87.9 54 0.0012 37.2 35.1 406 266-706 113-555 (881)
373 PF07721 TPR_4: Tetratricopept 87.9 0.65 1.4E-05 27.1 2.7 24 645-668 3-26 (26)
374 PF07721 TPR_4: Tetratricopept 87.8 0.74 1.6E-05 26.9 2.9 24 268-291 3-26 (26)
375 PF15015 NYD-SP12_N: Spermatog 87.5 12 0.00027 38.4 12.8 63 311-381 230-292 (569)
376 PF09670 Cas_Cas02710: CRISPR- 87.0 39 0.00084 35.6 17.1 140 519-675 132-273 (379)
377 PRK10941 hypothetical protein; 86.8 6.9 0.00015 38.7 10.7 69 431-507 179-247 (269)
378 KOG2114 Vacuolar assembly/sort 86.6 64 0.0014 36.7 26.1 49 246-296 350-398 (933)
379 PF05053 Menin: Menin; InterP 86.3 17 0.00037 39.1 13.6 85 429-516 273-359 (618)
380 PF04097 Nic96: Nup93/Nic96; 86.1 66 0.0014 36.4 21.5 31 471-501 410-440 (613)
381 smart00101 14_3_3 14-3-3 homol 85.9 36 0.00077 33.1 21.3 181 354-548 4-201 (244)
382 COG4976 Predicted methyltransf 85.6 1.4 3E-05 41.3 4.7 56 610-673 4-59 (287)
383 COG3629 DnrI DNA-binding trans 85.5 13 0.00028 36.8 11.7 71 308-386 152-222 (280)
384 KOG1310 WD40 repeat protein [G 85.4 4.6 0.0001 42.7 8.8 90 616-719 389-478 (758)
385 PF10952 DUF2753: Protein of u 85.4 14 0.0003 31.1 9.8 74 436-509 4-84 (140)
386 COG4976 Predicted methyltransf 85.3 1 2.2E-05 42.2 3.7 64 651-723 3-66 (287)
387 cd02683 MIT_1 MIT: domain cont 85.0 6.8 0.00015 30.2 7.7 50 221-271 5-54 (77)
388 KOG2422 Uncharacterized conser 84.8 64 0.0014 35.1 22.4 174 407-590 252-450 (665)
389 KOG4014 Uncharacterized conser 84.6 9.3 0.0002 34.6 9.2 150 415-594 50-239 (248)
390 PF04212 MIT: MIT (microtubule 84.5 6.9 0.00015 29.4 7.5 48 222-270 5-52 (69)
391 PF08311 Mad3_BUB1_I: Mad3/BUB 84.4 21 0.00045 30.7 11.4 87 489-586 40-126 (126)
392 PF09670 Cas_Cas02710: CRISPR- 84.4 51 0.0011 34.7 16.5 65 269-338 134-198 (379)
393 PRK13184 pknD serine/threonine 84.3 96 0.0021 36.8 33.2 109 271-387 480-588 (932)
394 KOG3824 Huntingtin interacting 84.0 2.6 5.7E-05 41.2 6.0 58 607-672 122-179 (472)
395 KOG2908 26S proteasome regulat 83.8 51 0.0011 33.2 18.2 98 402-500 84-182 (380)
396 KOG3824 Huntingtin interacting 83.4 3.2 7E-05 40.6 6.4 72 399-484 122-193 (472)
397 KOG0128 RNA-binding protein SA 83.4 89 0.0019 35.6 32.8 152 347-504 109-260 (881)
398 TIGR03504 FimV_Cterm FimV C-te 83.3 3.7 8E-05 27.7 4.8 25 647-671 3-27 (44)
399 TIGR02561 HrpB1_HrpK type III 83.2 13 0.00028 32.7 9.3 82 396-491 13-94 (153)
400 PF10255 Paf67: RNA polymerase 82.1 21 0.00046 37.5 12.2 73 562-634 125-197 (404)
401 cd02678 MIT_VPS4 MIT: domain c 81.7 12 0.00026 28.8 7.9 48 222-270 6-53 (75)
402 PF08311 Mad3_BUB1_I: Mad3/BUB 81.4 17 0.00038 31.2 9.7 87 280-378 40-126 (126)
403 PF14561 TPR_20: Tetratricopep 81.1 19 0.00042 28.8 9.2 48 329-384 8-55 (90)
404 COG3947 Response regulator con 80.7 27 0.00058 34.4 11.3 75 561-643 281-355 (361)
405 KOG4563 Cell cycle-regulated h 80.6 5.5 0.00012 40.1 7.0 63 643-705 41-103 (400)
406 KOG2561 Adaptor protein NUB1, 80.2 81 0.0017 33.0 17.4 121 266-386 163-302 (568)
407 smart00745 MIT Microtubule Int 79.5 16 0.00035 28.1 8.2 45 222-267 8-52 (77)
408 cd02682 MIT_AAA_Arch MIT: doma 79.4 15 0.00033 28.1 7.5 36 643-678 6-41 (75)
409 cd02684 MIT_2 MIT: domain cont 79.3 16 0.00035 28.0 7.8 50 222-272 6-55 (75)
410 cd02656 MIT MIT: domain contai 78.9 17 0.00038 27.8 8.1 49 222-271 6-54 (75)
411 PRK09169 hypothetical protein; 78.8 2.1E+02 0.0046 37.0 22.7 16 688-703 708-723 (2316)
412 KOG3364 Membrane protein invol 78.7 29 0.00062 30.0 9.6 65 394-462 33-100 (149)
413 KOG1497 COP9 signalosome, subu 78.0 79 0.0017 31.7 24.8 108 515-628 100-211 (399)
414 KOG2908 26S proteasome regulat 77.9 83 0.0018 31.8 19.2 94 527-622 84-178 (380)
415 KOG0889 Histone acetyltransfer 76.8 2.9E+02 0.0063 37.5 33.2 139 473-630 2734-2883(3550)
416 KOG3807 Predicted membrane pro 76.5 88 0.0019 31.4 16.7 57 439-505 190-246 (556)
417 KOG1310 WD40 repeat protein [G 76.5 11 0.00025 39.9 8.1 89 444-549 385-476 (758)
418 TIGR03504 FimV_Cterm FimV C-te 76.2 7.9 0.00017 26.1 4.6 25 437-461 3-27 (44)
419 KOG1920 IkappaB kinase complex 75.5 1.9E+02 0.004 34.7 22.0 63 481-545 958-1026(1265)
420 KOG0508 Ankyrin repeat protein 75.1 1.9 4.2E-05 44.6 2.2 73 626-698 320-392 (615)
421 KOG4422 Uncharacterized conser 74.9 1.1E+02 0.0025 31.9 29.4 67 309-378 273-340 (625)
422 smart00777 Mad3_BUB1_I Mad3/BU 74.8 50 0.0011 28.3 10.3 107 215-334 17-124 (125)
423 KOG4521 Nuclear pore complex, 73.9 1.3E+02 0.0029 35.7 16.0 183 267-462 921-1132(1480)
424 KOG0276 Vesicle coat complex C 73.0 20 0.00043 38.9 8.9 79 521-630 617-695 (794)
425 KOG0276 Vesicle coat complex C 72.9 31 0.00067 37.5 10.3 51 274-338 645-695 (794)
426 KOG2758 Translation initiation 72.6 1.1E+02 0.0024 30.7 16.2 183 216-422 123-317 (432)
427 PF10858 DUF2659: Protein of u 72.6 71 0.0015 28.5 18.4 190 489-716 12-201 (220)
428 cd02677 MIT_SNX15 MIT: domain 72.3 42 0.00091 25.8 9.0 48 221-269 5-52 (75)
429 COG3014 Uncharacterized protei 72.1 1.2E+02 0.0025 30.8 17.5 68 437-504 62-154 (449)
430 PF04212 MIT: MIT (microtubule 71.7 37 0.0008 25.4 8.1 45 646-690 8-53 (69)
431 PF05053 Menin: Menin; InterP 71.7 76 0.0017 34.5 12.7 71 601-674 277-349 (618)
432 KOG2063 Vacuolar assembly/sort 71.5 95 0.0021 36.2 14.5 186 477-671 506-712 (877)
433 cd02681 MIT_calpain7_1 MIT: do 71.3 45 0.00097 25.7 8.4 40 645-684 8-49 (76)
434 PF07163 Pex26: Pex26 protein; 70.5 1.1E+02 0.0025 30.1 13.4 137 271-416 40-181 (309)
435 PF12854 PPR_1: PPR repeat 69.8 9.6 0.00021 23.9 3.8 27 266-292 7-33 (34)
436 cd02681 MIT_calpain7_1 MIT: do 69.0 47 0.001 25.5 8.0 31 603-633 8-38 (76)
437 COG3914 Spy Predicted O-linked 68.9 1.5E+02 0.0032 32.6 14.2 93 565-673 73-172 (620)
438 PF10373 EST1_DNA_bind: Est1 D 68.6 58 0.0012 32.4 11.4 62 537-613 1-62 (278)
439 PF12854 PPR_1: PPR repeat 68.6 9.9 0.00022 23.8 3.6 26 643-668 7-32 (34)
440 PHA02537 M terminase endonucle 67.5 51 0.0011 31.7 9.7 102 527-630 92-207 (230)
441 COG3014 Uncharacterized protei 67.3 1.5E+02 0.0032 30.1 15.4 29 355-383 62-90 (449)
442 PRK15180 Vi polysaccharide bio 66.8 41 0.00089 35.4 9.4 121 444-588 300-420 (831)
443 COG2912 Uncharacterized conser 66.4 34 0.00074 33.5 8.4 83 598-693 178-260 (269)
444 PRK15180 Vi polysaccharide bio 65.8 17 0.00038 38.0 6.6 123 571-718 301-423 (831)
445 PF10373 EST1_DNA_bind: Est1 D 65.8 16 0.00035 36.5 6.7 62 620-697 1-62 (278)
446 COG3914 Spy Predicted O-linked 62.7 1.9E+02 0.004 31.8 13.5 127 512-658 62-191 (620)
447 PF07720 TPR_3: Tetratricopept 61.9 22 0.00048 22.7 4.2 28 352-379 2-31 (36)
448 PF07720 TPR_3: Tetratricopept 60.5 30 0.00065 22.1 4.7 28 644-671 2-31 (36)
449 KOG0546 HSP90 co-chaperone CPR 60.4 15 0.00033 37.0 5.0 121 564-700 227-358 (372)
450 PHA02537 M terminase endonucle 59.6 63 0.0014 31.1 8.7 109 276-386 93-213 (230)
451 cd02680 MIT_calpain7_2 MIT: do 58.9 51 0.0011 25.3 6.5 34 221-255 5-38 (75)
452 KOG2582 COP9 signalosome, subu 58.8 2.1E+02 0.0046 29.4 12.3 110 309-422 102-212 (422)
453 PF01535 PPR: PPR repeat; Int 58.6 15 0.00033 21.8 3.1 27 645-671 2-28 (31)
454 cd02683 MIT_1 MIT: domain cont 58.6 83 0.0018 24.3 8.1 43 646-688 9-52 (77)
455 KOG4521 Nuclear pore complex, 56.8 4.2E+02 0.0092 31.9 17.6 182 226-422 924-1132(1480)
456 cd02679 MIT_spastin MIT: domai 56.7 62 0.0013 25.1 6.7 32 606-637 13-44 (79)
457 PF10938 YfdX: YfdX protein; 56.4 1.5E+02 0.0033 26.6 11.3 112 224-337 4-145 (155)
458 KOG0546 HSP90 co-chaperone CPR 56.2 17 0.00036 36.8 4.4 98 399-504 228-338 (372)
459 PF01535 PPR: PPR repeat; Int 56.1 15 0.00033 21.8 2.8 26 269-294 3-28 (31)
460 TIGR02710 CRISPR-associated pr 55.5 2.7E+02 0.0058 29.2 14.5 59 564-625 135-195 (380)
461 KOG0508 Ankyrin repeat protein 54.3 27 0.00059 36.6 5.7 72 333-404 319-390 (615)
462 PF13041 PPR_2: PPR repeat fam 54.1 43 0.00093 22.9 5.2 28 644-671 4-31 (50)
463 PF09205 DUF1955: Domain of un 53.9 1.1E+02 0.0024 26.5 8.1 53 611-671 96-148 (161)
464 smart00745 MIT Microtubule Int 53.7 98 0.0021 23.6 8.5 32 647-678 12-43 (77)
465 TIGR00756 PPR pentatricopeptid 53.2 27 0.00059 21.2 3.8 27 645-671 2-28 (35)
466 KOG2280 Vacuolar assembly/sort 52.2 4.1E+02 0.0088 30.3 19.6 280 225-584 510-795 (829)
467 KOG2758 Translation initiation 51.9 2.7E+02 0.0058 28.1 16.8 178 471-673 125-318 (432)
468 KOG2063 Vacuolar assembly/sort 50.9 3.1E+02 0.0068 32.2 13.9 182 312-503 507-712 (877)
469 PF13041 PPR_2: PPR repeat fam 50.8 46 0.001 22.8 4.9 29 434-462 4-32 (50)
470 KOG1920 IkappaB kinase complex 50.6 5.3E+02 0.012 31.2 28.4 25 605-629 1003-1027(1265)
471 smart00777 Mad3_BUB1_I Mad3/BU 50.1 1.3E+02 0.0028 25.8 8.3 79 495-584 46-124 (125)
472 KOG3807 Predicted membrane pro 49.6 2.9E+02 0.0064 27.9 19.1 110 320-462 195-304 (556)
473 TIGR00756 PPR pentatricopeptid 49.5 35 0.00077 20.6 3.9 27 603-629 2-28 (35)
474 COG1747 Uncharacterized N-term 49.4 3.8E+02 0.0082 29.1 21.6 166 436-630 69-234 (711)
475 PF10938 YfdX: YfdX protein; 49.4 1.5E+02 0.0032 26.6 9.0 109 521-629 5-145 (155)
476 KOG0530 Protein farnesyltransf 48.6 2.8E+02 0.006 27.3 16.3 120 407-549 57-178 (318)
477 PF13812 PPR_3: Pentatricopept 48.4 44 0.00094 20.2 4.1 27 645-671 3-29 (34)
478 cd02678 MIT_VPS4 MIT: domain c 48.1 1.2E+02 0.0027 23.1 8.3 43 647-689 10-53 (75)
479 PRK12798 chemotaxis protein; R 47.5 3.7E+02 0.008 28.4 22.3 185 272-481 118-303 (421)
480 cd02679 MIT_spastin MIT: domai 47.4 1.2E+02 0.0026 23.5 7.0 35 647-681 12-46 (79)
481 COG1747 Uncharacterized N-term 47.3 4.1E+02 0.0088 28.9 21.9 169 266-462 66-234 (711)
482 KOG2034 Vacuolar sorting prote 46.1 5.4E+02 0.012 30.0 21.6 59 398-465 363-421 (911)
483 TIGR02710 CRISPR-associated pr 45.8 3.8E+02 0.0082 28.1 14.3 58 272-333 136-195 (380)
484 PF07163 Pex26: Pex26 protein; 45.5 3.2E+02 0.0069 27.1 14.3 140 435-583 37-182 (309)
485 PRK12798 chemotaxis protein; R 45.2 4E+02 0.0086 28.2 24.6 205 312-542 115-319 (421)
486 PF13812 PPR_3: Pentatricopept 45.2 54 0.0012 19.8 4.2 27 603-629 3-29 (34)
487 COG2912 Uncharacterized conser 44.7 1.3E+02 0.0029 29.6 8.4 69 431-507 179-247 (269)
488 KOG1938 Protein with predicted 44.2 1.7E+02 0.0037 34.1 10.3 97 531-630 288-384 (960)
489 PF10858 DUF2659: Protein of u 44.0 2.4E+02 0.0053 25.3 15.8 130 489-630 71-200 (220)
490 PF04840 Vps16_C: Vps16, C-ter 43.7 3.8E+02 0.0082 27.5 25.1 75 602-706 209-283 (319)
491 cd02680 MIT_calpain7_2 MIT: do 43.6 1.3E+02 0.0029 23.0 6.6 22 277-298 17-38 (75)
492 cd02656 MIT MIT: domain contai 42.2 1.5E+02 0.0033 22.5 8.5 32 647-678 10-41 (75)
493 PRK09169 hypothetical protein; 41.3 9.8E+02 0.021 31.6 28.3 37 648-684 752-788 (2316)
494 COG5091 SGT1 Suppressor of G2 39.4 48 0.001 32.1 4.4 60 406-465 52-111 (368)
495 COG2178 Predicted RNA-binding 39.1 3.3E+02 0.0071 25.4 12.2 108 355-466 33-154 (204)
496 KOG0889 Histone acetyltransfer 38.7 1.3E+03 0.027 32.2 30.8 36 641-676 2810-2845(3550)
497 KOG0530 Protein farnesyltransf 35.2 4.5E+02 0.0098 25.9 17.6 174 442-655 52-233 (318)
498 cd09034 BRO1_Alix_like Protein 33.9 5.5E+02 0.012 26.5 14.3 118 308-425 110-283 (345)
499 cd02684 MIT_2 MIT: domain cont 33.9 2.2E+02 0.0047 21.8 8.5 43 649-691 12-55 (75)
500 COG4455 ImpE Protein of avirul 33.7 1.9E+02 0.0042 27.5 7.2 79 603-694 3-81 (273)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-42 Score=347.37 Aligned_cols=410 Identities=19% Similarity=0.256 Sum_probs=370.8
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhh
Q 004829 216 LGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI 295 (728)
Q Consensus 216 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 295 (728)
...|..++.+-.+|+.+..+| +++.|+.+|+.++.+ .|+.+.+|.++|.++...|+.+.|..+|..++++
T Consensus 110 r~~~q~ae~ysn~aN~~kerg-~~~~al~~y~~aiel---------~p~fida~inla~al~~~~~~~~a~~~~~~alql 179 (966)
T KOG4626|consen 110 RKNPQGAEAYSNLANILKERG-QLQDALALYRAAIEL---------KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL 179 (966)
T ss_pred hccchHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHhc---------CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc
Confidence 456778899999999999997 999999999999986 3777999999999999999999999999999988
Q ss_pred hhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004829 296 PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQ 375 (728)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 375 (728)
. +.. +-+...+|.++..+|+..+|..+|.+|++. .|..+.+|.+||.++..+|+...|+..|+
T Consensus 180 n-----P~l----~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--------qp~fAiawsnLg~~f~~~Gei~~aiq~y~ 242 (966)
T KOG4626|consen 180 N-----PDL----YCARSDLGNLLKAEGRLEEAKACYLKAIET--------QPCFAIAWSNLGCVFNAQGEIWLAIQHYE 242 (966)
T ss_pred C-----cch----hhhhcchhHHHHhhcccchhHHHHHHHHhh--------CCceeeeehhcchHHhhcchHHHHHHHHH
Confidence 6 222 234788999999999999999999999998 88999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHH
Q 004829 376 MALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFS 455 (728)
Q Consensus 376 ~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 455 (728)
+|+.+.|... .+|.+||.+|-..+.|++|+..|.+|+.+ .|..+.++.++|.+|+.+|..+-|+..
T Consensus 243 eAvkldP~f~--------dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l------rpn~A~a~gNla~iYyeqG~ldlAI~~ 308 (966)
T KOG4626|consen 243 EAVKLDPNFL--------DAYINLGNVYKEARIFDRAVSCYLRALNL------RPNHAVAHGNLACIYYEQGLLDLAIDT 308 (966)
T ss_pred HhhcCCCcch--------HHHhhHHHHHHHHhcchHHHHHHHHHHhc------CCcchhhccceEEEEeccccHHHHHHH
Confidence 9999876654 46999999999999999999999999865 688899999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHH
Q 004829 456 YHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELE 535 (728)
Q Consensus 456 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 535 (728)
|++++++ .|....++.+||.++...|+..+|..+|.+++.+ .+..+.++++||.+|..+|.++
T Consensus 309 Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l---------~p~hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 309 YKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL---------CPNHADAMNNLGNIYREQGKIE 371 (966)
T ss_pred HHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh---------CCccHHHHHHHHHHHHHhccch
Confidence 9999999 9999999999999999999999999999999999 3556788999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC
Q 004829 536 QAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY 615 (728)
Q Consensus 536 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 615 (728)
+|..+|.+++++++.. +....+||.+|..+|++++|+.+|++++.+ .+..+.++.++|..|..+|
T Consensus 372 ~A~~ly~~al~v~p~~-------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 372 EATRLYLKALEVFPEF-------AAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHHHHhhChhh-------hhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhh
Confidence 9999999999998776 677889999999999999999999999998 6778999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 004829 616 TINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELL 695 (728)
Q Consensus 616 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~ 695 (728)
+...|+.+|.+|+.+ +|..+++..+||.+|...|+..+|+..|+.++.+. |+..+++.+|+.++
T Consensus 437 ~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk--------PDfpdA~cNllh~l 500 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK--------PDFPDAYCNLLHCL 500 (966)
T ss_pred hHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC--------CCCchhhhHHHHHH
Confidence 999999999999999 99999999999999999999999999999999964 88888999999988
Q ss_pred HHhCChhHHHHHHHHHHHhh
Q 004829 696 KEAGRVRNRKSRSLVTFLDS 715 (728)
Q Consensus 696 ~~~g~~~~A~~~~l~~ll~~ 715 (728)
.-.-+|.+-- +.+.++...
T Consensus 501 q~vcdw~D~d-~~~~kl~si 519 (966)
T KOG4626|consen 501 QIVCDWTDYD-KRMKKLVSI 519 (966)
T ss_pred HHHhcccchH-HHHHHHHHH
Confidence 8777766644 444444443
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-42 Score=347.19 Aligned_cols=418 Identities=20% Similarity=0.270 Sum_probs=376.6
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhh
Q 004829 215 GLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVE 294 (728)
Q Consensus 215 ~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 294 (728)
...+|.....++-++..+++.. +++.....-..+++. .+..+.+|.++|.++...|++++|+.+|+.+++
T Consensus 75 ~~~d~t~~~~llll~ai~~q~~-r~d~s~a~~~~a~r~---------~~q~ae~ysn~aN~~kerg~~~~al~~y~~aie 144 (966)
T KOG4626|consen 75 GQEDPTNTERLLLLSAIFFQGS-RLDKSSAGSLLAIRK---------NPQGAEAYSNLANILKERGQLQDALALYRAAIE 144 (966)
T ss_pred hccCCCcccceeeehhhhhccc-chhhhhhhhhhhhhc---------cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHh
Confidence 3445554455555555555552 566655555555543 366789999999999999999999999999998
Q ss_pred hhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004829 295 IPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKIC 374 (728)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 374 (728)
+. ++ .+.+|.++|.++...|+.+.|..+|..++++ +|...-+...+|.++...|+..+|..+|
T Consensus 145 l~-----p~----fida~inla~al~~~~~~~~a~~~~~~alql--------nP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 145 LK-----PK----FIDAYINLAAALVTQGDLELAVQCFFEALQL--------NPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred cC-----ch----hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--------CcchhhhhcchhHHHHhhcccchhHHHH
Confidence 85 33 3456999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHH
Q 004829 375 QMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIF 454 (728)
Q Consensus 375 ~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 454 (728)
.+|++..+.. +.+|.+||.++..+|+...|+.+|++|+.+ +|....+|.+||.+|...+.|+.|+.
T Consensus 208 lkAi~~qp~f--------AiawsnLg~~f~~~Gei~~aiq~y~eAvkl------dP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 208 LKAIETQPCF--------AIAWSNLGCVFNAQGEIWLAIQHYEEAVKL------DPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HHHHhhCCce--------eeeehhcchHHhhcchHHHHHHHHHHhhcC------CCcchHHHhhHHHHHHHHhcchHHHH
Confidence 9999877633 457999999999999999999999999866 89999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCH
Q 004829 455 SYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL 534 (728)
Q Consensus 455 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 534 (728)
.|.+|+.+ .|..+.++.++|.+|+.+|..+-|+..|++++++ .|....++++||..+...|+.
T Consensus 274 ~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~---------~P~F~~Ay~NlanALkd~G~V 336 (966)
T KOG4626|consen 274 CYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL---------QPNFPDAYNNLANALKDKGSV 336 (966)
T ss_pred HHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc---------CCCchHHHhHHHHHHHhccch
Confidence 99999998 9999999999999999999999999999999998 566788999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc
Q 004829 535 EQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR 614 (728)
Q Consensus 535 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 614 (728)
.+|..+|.+++.+.+.. +.+.++||.+|..+|.+++|..+|.++++. .+..+.++.+||.+|.++
T Consensus 337 ~ea~~cYnkaL~l~p~h-------adam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 337 TEAVDCYNKALRLCPNH-------ADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred HHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhc
Confidence 99999999999997766 678899999999999999999999999998 566789999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 004829 615 YTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAEL 694 (728)
Q Consensus 615 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~ 694 (728)
|++++|+.+|++++.+ .|..++++.++|..|..+|+...|+.+|.+|+.+ +|..++++.+||.+
T Consensus 402 gnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi 465 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASI 465 (966)
T ss_pred ccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHH
Confidence 9999999999999999 9999999999999999999999999999999994 69999999999999
Q ss_pred HHHhCChhHHHHHHHHHHHhhccccccc
Q 004829 695 LKEAGRVRNRKSRSLVTFLDSNSQNLKE 722 (728)
Q Consensus 695 ~~~~g~~~~A~~~~l~~ll~~~~~~~~~ 722 (728)
|...|+..+|+ ..+++.+...|+..+.
T Consensus 466 ~kDsGni~~AI-~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 466 YKDSGNIPEAI-QSYRTALKLKPDFPDA 492 (966)
T ss_pred hhccCCcHHHH-HHHHHHHccCCCCchh
Confidence 99999999999 9999999999987653
No 3
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=2.8e-30 Score=269.11 Aligned_cols=421 Identities=40% Similarity=0.500 Sum_probs=359.3
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhh
Q 004829 218 NPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV 297 (728)
Q Consensus 218 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 297 (728)
.+.....++..++.....++.+.+.+....++++..++.... .....+......+...+.+++|....++......
T Consensus 84 ~~~~~~~~~a~~r~~~~e~~~~~~el~~~~r~~k~~e~~~~~----~~~~~~hl~~~~~~~~~~l~ea~~~~e~~~~~~~ 159 (508)
T KOG1840|consen 84 SEAGGQKLLAQVRRLCQEGEWLEDELALTQRALKQSERSVAQ----LEEEKLHLLAAIQALLLQLDEAEQGQEQAAVTPV 159 (508)
T ss_pred cchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHhhhhhcccccccccch
Confidence 456667788888888888878889999888888887665321 1112355566677777788888877776554320
Q ss_pred hhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829 298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMA 377 (728)
Q Consensus 298 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 377 (728)
.-.++..+...-+.+..+..+...+.+..+..+..+|....+...++..|..+|+|+.|+..++.+
T Consensus 160 --------------~d~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~A 225 (508)
T KOG1840|consen 160 --------------KDSLADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQA 225 (508)
T ss_pred --------------hHHHHhhccccccccccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 112333333333444667777777777777888889999999999999999999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004829 378 LDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYH 457 (728)
Q Consensus 378 l~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 457 (728)
+++..+..+. .++.+......+|.+|..++++.+|+..|+
T Consensus 226 l~~l~k~~G~----------------------------------------~hl~va~~l~~~a~~y~~~~k~~eAv~ly~ 265 (508)
T KOG1840|consen 226 LRILEKTSGL----------------------------------------KHLVVASMLNILALVYRSLGKYDEAVNLYE 265 (508)
T ss_pred HHHHHHccCc----------------------------------------cCHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9885544321 234445556689999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Q 004829 458 KALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQA 537 (728)
Q Consensus 458 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 537 (728)
+|+.+.+..+|.++|..+.++.+||.+|...|++++|..++++|+++.++. .+..++.....+.+++.++..++++++|
T Consensus 266 ~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~-~~~~~~~v~~~l~~~~~~~~~~~~~Eea 344 (508)
T KOG1840|consen 266 EALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL-LGASHPEVAAQLSELAAILQSMNEYEEA 344 (508)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHHhcchhHH
Confidence 999999999999999999999999999999999999999999999999984 4778999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCC
Q 004829 538 VKLLNKALKIYGKTPGQQS-TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYT 616 (728)
Q Consensus 538 ~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 616 (728)
..+++++++++.+.++... .++.++.+||.+|+.+|+|.+|.++|++|+.+.+...+.........+..||..|.+.++
T Consensus 345 ~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~ 424 (508)
T KOG1840|consen 345 KKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK 424 (508)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence 9999999999998888877 899999999999999999999999999999999999888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Q 004829 617 INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLK 696 (728)
Q Consensus 617 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~ 696 (728)
+.+|..+|.++..+. ...|+++|++...|.+||.+|..+|++++|+++.++++..++..+|..+|.....-..++....
T Consensus 425 ~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLADLSK 503 (508)
T ss_pred cchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999999998887777776654
Q ss_pred Hh
Q 004829 697 EA 698 (728)
Q Consensus 697 ~~ 698 (728)
..
T Consensus 504 ~~ 505 (508)
T KOG1840|consen 504 EA 505 (508)
T ss_pred Hh
Confidence 43
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.3e-30 Score=292.95 Aligned_cols=421 Identities=18% Similarity=0.181 Sum_probs=314.3
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhc
Q 004829 221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLED 300 (728)
Q Consensus 221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 300 (728)
.+..+..+|..++..| +|++|+.+|++++.+. ++ ...+.++|.||..+|++++|+..+++++++.
T Consensus 126 ~a~~~k~~G~~~~~~~-~~~~Ai~~y~~al~~~-------p~---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~---- 190 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNK-DFNKAIKLYSKAIECK-------PD---PVYYSNRAACHNALGDWEKVVEDTTAALELD---- 190 (615)
T ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC-------Cc---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC----
Confidence 4667899999999997 9999999999999852 22 3468899999999999999999999999875
Q ss_pred CCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829 301 GQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDI 380 (728)
Q Consensus 301 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 380 (728)
++.. .+++.+|.+|..+|++++|+..|..+.... .......... +...+ . ..+...+..++..
T Consensus 191 -p~~~----~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~-----~~~~~~~~~~--~~~~l-~----~~a~~~~~~~l~~ 253 (615)
T TIGR00990 191 -PDYS----KALNRRANAYDGLGKYADALLDLTASCIID-----GFRNEQSAQA--VERLL-K----KFAESKAKEILET 253 (615)
T ss_pred -CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccHHHHHH--HHHHH-H----HHHHHHHHHHHhc
Confidence 4433 359999999999999999999997665441 0011110000 00000 0 0111111111111
Q ss_pred HHHcCC-------------------------CCcHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHhcCCChhH
Q 004829 381 HRENTS-------------------------PASIEEAADRRLMGLIC---DSKGDYEAALEHYVLASMSMAANGHELDV 432 (728)
Q Consensus 381 ~~~~~~-------------------------~~~~~~a~~~~~lg~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 432 (728)
.+.... .........+..++..+ ...+++++|+..|++++... ...+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~---~~~~~~ 330 (615)
T TIGR00990 254 KPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG---KLGEKE 330 (615)
T ss_pred CCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC---CCChhh
Confidence 100000 00000011223333332 23478999999999887542 235677
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCC
Q 004829 433 ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGI 512 (728)
Q Consensus 433 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 512 (728)
+.++..+|.++..+|++++|+..|++++++ .|....++..+|.++...|++++|+.+|++++++.
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------- 395 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN------- 395 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------
Confidence 889999999999999999999999999998 88888999999999999999999999999999882
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829 513 PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS 592 (728)
Q Consensus 513 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 592 (728)
|....++..+|.++...|++++|+.+|++++.+.+.. ...+..+|.++..+|++++|+..|++++..
T Consensus 396 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~---- 462 (615)
T TIGR00990 396 --SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-------IFSHIQLGVTQYKEGSIASSMATFRRCKKN---- 462 (615)
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence 3346789999999999999999999999999886554 456789999999999999999999999986
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 593 GEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM 672 (728)
Q Consensus 593 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~ 672 (728)
.+....++..+|.++...|++++|+..|++++.+..... ..+......+...+.++...|++++|+.++++++.+
T Consensus 463 ----~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~-~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 463 ----FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK-PMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred ----CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc-cccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 233457889999999999999999999999999832210 001111222222333445579999999999999984
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829 673 REEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ 718 (728)
Q Consensus 673 ~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~ 718 (728)
+|+...++..||.++..+|++++|+ ..++.+++..+.
T Consensus 538 --------~p~~~~a~~~la~~~~~~g~~~eAi-~~~e~A~~l~~~ 574 (615)
T TIGR00990 538 --------DPECDIAVATMAQLLLQQGDVDEAL-KLFERAAELART 574 (615)
T ss_pred --------CCCcHHHHHHHHHHHHHccCHHHHH-HHHHHHHHHhcc
Confidence 4677778999999999999999999 888888877654
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=8.8e-29 Score=294.65 Aligned_cols=409 Identities=18% Similarity=0.181 Sum_probs=246.0
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhh
Q 004829 218 NPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV 297 (728)
Q Consensus 218 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 297 (728)
.|.....+..+|..+...| ++++|+.+|++++... |....++..+|.++...|++++|+..|++++...
T Consensus 461 ~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 529 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKG-DLAKAREAFEKALSIE---------PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID- 529 (899)
T ss_pred CCCCcHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhC---------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 4555566677777777775 7777777777776541 2334456667777777777777777777776543
Q ss_pred hhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829 298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMA 377 (728)
Q Consensus 298 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 377 (728)
+.+ ..++..++.++...|++++|+.++++++.. .|.....+..++.+|...|++++|+..++++
T Consensus 530 ----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 530 ----PKN----LRAILALAGLYLRTGNEEEAVAWLEKAAEL--------NPQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred ----cCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 222 223666677777777777777777776655 4445556666666677777777777776666
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004829 378 LDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYH 457 (728)
Q Consensus 378 l~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 457 (728)
+...+.. ..++..+|.++...|++++|+..|++++.. .+....++..+|.++...|++++|+.+|+
T Consensus 594 ~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 594 ADAAPDS--------PEAWLMLGRAQLAAGDLNKAVSSFKKLLAL------QPDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred HHcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5433221 234666777777777777777777766543 23344566677777777777777777777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Q 004829 458 KALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQA 537 (728)
Q Consensus 458 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 537 (728)
+++.. .|....++..++.++...|++++|+.+++.+.... +.....+..+|.++...|++++|
T Consensus 660 ~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 660 RALEL--------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH---------PKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------cCChHHHHHHHHHHHHCCCHHHH
Confidence 77665 44445555566666666666666666665554441 12234455566666666666666
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCH
Q 004829 538 VKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTI 617 (728)
Q Consensus 538 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 617 (728)
+..|++++...+.. ..+..++.++...|++++|+..+++++.. .+....++..+|.+|...|++
T Consensus 723 ~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 723 IQAYRKALKRAPSS--------QNAIKLHRALLASGNTAEAVKTLEAWLKT--------HPNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHHHHHhhCCCc--------hHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCcCH
Confidence 66666666553322 23345566666666666666666665553 111234556666666666666
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 004829 618 NEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE 697 (728)
Q Consensus 618 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~ 697 (728)
++|+.+|+++++. +|....++..++.++...|+ .+|+.++++++.+. |+....+..+|.++..
T Consensus 787 ~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 787 DKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA--------PNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHH
Confidence 6666666666655 44445555566666666666 55666666655532 3333344555566666
Q ss_pred hCChhHHHHHHHHHHHhhccc
Q 004829 698 AGRVRNRKSRSLVTFLDSNSQ 718 (728)
Q Consensus 698 ~g~~~~A~~~~l~~ll~~~~~ 718 (728)
.|++++|. ..++.+++..|.
T Consensus 850 ~g~~~~A~-~~~~~a~~~~~~ 869 (899)
T TIGR02917 850 KGEADRAL-PLLRKAVNIAPE 869 (899)
T ss_pred cCCHHHHH-HHHHHHHhhCCC
Confidence 66666666 555555555544
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=1e-28 Score=294.13 Aligned_cols=408 Identities=18% Similarity=0.213 Sum_probs=352.4
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhh
Q 004829 215 GLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVE 294 (728)
Q Consensus 215 ~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 294 (728)
...+|.....+..++..+...| ++++|+.+|++++... |....++..++.++...|++++|+.++++++.
T Consensus 492 ~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 561 (899)
T TIGR02917 492 LSIEPDFFPAAANLARIDIQEG-NPDDAIQRFEKVLTID---------PKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561 (899)
T ss_pred HhhCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC---------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456778888999999999997 9999999999998752 34466788999999999999999999999987
Q ss_pred hhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004829 295 IPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKIC 374 (728)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 374 (728)
.. +... ..+..++.+|...|++++|+.++++++.. .|....++..+|.++...|++++|+.+|
T Consensus 562 ~~-----~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 562 LN-----PQEI----EPALALAQYYLGKGQLKKALAILNEAADA--------APDSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred hC-----ccch----hHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 64 2222 34788999999999999999999999876 5666788999999999999999999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHH
Q 004829 375 QMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIF 454 (728)
Q Consensus 375 ~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 454 (728)
++++...+.. ..++..+|.++...|++++|+..|++++.. .|....++..++.++...|++++|+.
T Consensus 625 ~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 625 KKLLALQPDS--------ALALLLLADAYAVMKNYAKAITSLKRALEL------KPDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred HHHHHhCCCC--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999875432 235888999999999999999999998754 45566788999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCH
Q 004829 455 SYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL 534 (728)
Q Consensus 455 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 534 (728)
+++.+... .|.....+..+|.++...|++++|+..|++++..... . ..+..++.++...|++
T Consensus 691 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~------~----~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 691 IAKSLQKQ--------HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS------S----QNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHhh--------CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------c----hHHHHHHHHHHHCCCH
Confidence 99988776 6666778889999999999999999999999987322 1 4677899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc
Q 004829 535 EQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR 614 (728)
Q Consensus 535 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 614 (728)
++|+..+++++...+.. ..++..+|.+|...|++++|+.+|+++++. .+....++..+|.++...
T Consensus 753 ~~A~~~~~~~l~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 753 AEAVKTLEAWLKTHPND-------AVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhc
Confidence 99999999999875443 567889999999999999999999999986 233457889999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 004829 615 YTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAEL 694 (728)
Q Consensus 615 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~ 694 (728)
|+ .+|+.++++++.+ .|+....+..+|.++...|++++|+.+|+++++. .|....++..++.+
T Consensus 818 ~~-~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~ 880 (899)
T TIGR02917 818 KD-PRALEYAEKALKL--------APNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--------APEAAAIRYHLALA 880 (899)
T ss_pred Cc-HHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHH
Confidence 99 8899999999998 5566667889999999999999999999999984 35677889999999
Q ss_pred HHHhCChhHHHHHHHHHHHh
Q 004829 695 LKEAGRVRNRKSRSLVTFLD 714 (728)
Q Consensus 695 ~~~~g~~~~A~~~~l~~ll~ 714 (728)
+...|++++|+ ..++.+++
T Consensus 881 ~~~~g~~~~A~-~~~~~~~~ 899 (899)
T TIGR02917 881 LLATGRKAEAR-KELDKLLN 899 (899)
T ss_pred HHHcCCHHHHH-HHHHHHhC
Confidence 99999999999 88887763
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=1.3e-28 Score=276.68 Aligned_cols=401 Identities=16% Similarity=0.137 Sum_probs=298.5
Q ss_pred ccCCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhH
Q 004829 205 QNGAEDPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNE 284 (728)
Q Consensus 205 ~~~~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 284 (728)
...+..+.......|+ ...+..+|.++...| ++++|+..+.+++.+ +|....+++.+|.+|..+|++++
T Consensus 144 ~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~-~~~~Ai~~~~~al~l---------~p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 144 NKAIKLYSKAIECKPD-PVYYSNRAACHNALG-DWEKVVEDTTAALEL---------DPDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhC-CHHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHcCCHHH
Confidence 3444445555555565 568999999999997 999999999999986 25567889999999999999999
Q ss_pred HHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-------------HHc--------
Q 004829 285 AIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQR-------------QVL-------- 343 (728)
Q Consensus 285 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-------------~~~-------- 343 (728)
|+..|..++.+.. ..... ...... ..+. ..+...+..++.... ..+
T Consensus 213 A~~~~~~~~~~~~----~~~~~--~~~~~~--~~l~-----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 213 ALLDLTASCIIDG----FRNEQ--SAQAVE--RLLK-----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAG 279 (615)
T ss_pred HHHHHHHHHHhCC----CccHH--HHHHHH--HHHH-----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhh
Confidence 9999987654421 11100 000000 0000 011111111111000 000
Q ss_pred ----CCCChHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829 344 ----GETDHRVGETCRYVAEAH---VQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHY 416 (728)
Q Consensus 344 ----~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 416 (728)
...++.....+..++..+ ...++|++|+.+|++++.... ..+..+.++..+|.++...|++++|+..|
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~-----~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK-----LGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 000222233334444333 234789999999999987641 12344567999999999999999999999
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHH
Q 004829 417 VLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKS 496 (728)
Q Consensus 417 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 496 (728)
++++.+ .|....++..+|.++...|++++|+.+|++++++ .|....++..+|.++...|++++|+.
T Consensus 355 ~kal~l------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 355 SKSIEL------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHFIKGEFAQAGK 420 (615)
T ss_pred HHHHHc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999866 5677889999999999999999999999999998 77778899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHH
Q 004829 497 YCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYS 576 (728)
Q Consensus 497 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 576 (728)
+|++++.+ .|.....+..+|.++..+|++++|+..|++++...+.. ..++..+|.++..+|+++
T Consensus 421 ~~~kal~l---------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~-------~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 421 DYQKSIDL---------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA-------PDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHHHHHHc---------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHccCHH
Confidence 99999998 34456778999999999999999999999999886654 567889999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004829 577 DSYNTLKSAISKFRTSGEKKSALFGIALNQMGL-ACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA 655 (728)
Q Consensus 577 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~ 655 (728)
+|+..|++++.+........ .. ...+...+. ++...|++++|+.+|++++.+ +|+...++..+|.++..
T Consensus 485 ~A~~~~~~Al~l~p~~~~~~-~~-~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--------~p~~~~a~~~la~~~~~ 554 (615)
T TIGR00990 485 EAIEKFDTAIELEKETKPMY-MN-VLPLINKALALFQWKQDFIEAENLCEKALII--------DPECDIAVATMAQLLLQ 554 (615)
T ss_pred HHHHHHHHHHhcCCcccccc-cc-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHH
Confidence 99999999998744322111 11 122333333 344479999999999999998 77777789999999999
Q ss_pred cCChHHHHHHHHHHHHHHH
Q 004829 656 MGRIDDAIEILEYVVGMRE 674 (728)
Q Consensus 656 ~g~~~~A~~~~~~al~~~~ 674 (728)
+|++++|+.+|++++++.+
T Consensus 555 ~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 555 QGDVDEALKLFERAAELAR 573 (615)
T ss_pred ccCHHHHHHHHHHHHHHhc
Confidence 9999999999999999764
No 8
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.6e-28 Score=257.94 Aligned_cols=454 Identities=18% Similarity=0.196 Sum_probs=359.7
Q ss_pred CccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHH
Q 004829 208 AEDPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIP 287 (728)
Q Consensus 208 ~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 287 (728)
...+......++..+.++..++..++..| +|+.++.++..|+... ...+..+..++.+|.+|..+|+|++|..
T Consensus 256 ~~ll~~ay~~n~~nP~~l~~LAn~fyfK~-dy~~v~~la~~ai~~t------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 256 VQLLQRAYKENNENPVALNHLANHFYFKK-DYERVWHLAEHAIKNT------ENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHhhcc-cHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 33455566678899999999999999997 9999999999998863 3335668889999999999999999999
Q ss_pred HHHHhhhhhhhhcCCch-hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC-
Q 004829 288 VLERSVEIPVLEDGQDH-ALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSL- 365 (728)
Q Consensus 288 ~~~~al~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g- 365 (728)
+|.+++... +++ .. .++.+|..|...|+++.|+.+|++++.. .|....+...||.+|...+
T Consensus 329 yY~~s~k~~-----~d~~~l----~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~ 391 (1018)
T KOG2002|consen 329 YYMESLKAD-----NDNFVL----PLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAK 391 (1018)
T ss_pred HHHHHHccC-----CCCccc----cccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhh
Confidence 999999865 222 23 3899999999999999999999999998 7888899999999998876
Q ss_pred ---CHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004829 366 ---QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDA 442 (728)
Q Consensus 366 ---~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 442 (728)
..+.|..++.+++...+.. ..+|..++.++....-+. ++.+|..|+.++...... --..+++++|..
T Consensus 392 ~~~~~d~a~~~l~K~~~~~~~d--------~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~-ip~E~LNNvasl 461 (1018)
T KOG2002|consen 392 KQEKRDKASNVLGKVLEQTPVD--------SEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQ-IPPEVLNNVASL 461 (1018)
T ss_pred hhHHHHHHHHHHHHHHhccccc--------HHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCC-CCHHHHHhHHHH
Confidence 5677788888877665332 456888888877655554 499999999887766655 556789999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHH
Q 004829 443 YLSLARFDEAIFSYHKALTAFKSAKGENH--PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASG 520 (728)
Q Consensus 443 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 520 (728)
++..|.+.+|..+|..|+..+......+. .......+++|.++..+++++.|.+.|...+.. +|....+
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---------hp~YId~ 532 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE---------HPGYIDA 532 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---------CchhHHH
Confidence 99999999999999999998654332222 233557899999999999999999999999988 6778899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC-----------------------------cHHHHHHHHHHHHHH
Q 004829 521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS-----------------------------TIAGIEAQMGVMYYM 571 (728)
Q Consensus 521 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------------------------~~~~~~~~la~~~~~ 571 (728)
+..+|.+....+...+|...+..++.+....+.... .-+.++..||.+|+.
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 999998888889999999999988876554422111 112334456666653
Q ss_pred c-----CCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004829 572 T-----GNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVY 646 (728)
Q Consensus 572 ~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 646 (728)
. .+.+.+...+.+|++++.+.... +|....+-+.+|.++...|++.+|...|.++.+-. .+...+|
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--------~~~~dv~ 683 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--------SDFEDVW 683 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH--------hhCCcee
Confidence 2 23345666666666665554333 34457788999999999999999999999998873 2345589
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829 647 SNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNL 720 (728)
Q Consensus 647 ~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~ 720 (728)
.+||.||..+|+|..|++.|+.++..+. ..+...++..||.+|...|++.+|. ..+..++...|.+.
T Consensus 684 lNlah~~~e~~qy~~AIqmYe~~lkkf~------~~~~~~vl~~Lara~y~~~~~~eak-~~ll~a~~~~p~~~ 750 (1018)
T KOG2002|consen 684 LNLAHCYVEQGQYRLAIQMYENCLKKFY------KKNRSEVLHYLARAWYEAGKLQEAK-EALLKARHLAPSNT 750 (1018)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHhc------ccCCHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhCCccc
Confidence 9999999999999999999999998652 2345678889999999999999999 87777777777653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1e-27 Score=286.47 Aligned_cols=423 Identities=14% Similarity=0.063 Sum_probs=318.1
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhh-------------hc
Q 004829 234 SSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVL-------------ED 300 (728)
Q Consensus 234 ~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------------~~ 300 (728)
..| ++++|+..+++++... |....++..+|.+++..|++++|+..+++++..... ..
T Consensus 159 ~~g-~~~~A~~~L~~ll~~~---------P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~ 228 (1157)
T PRK11447 159 LPA-QRPEAINQLQRLNADY---------PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDM 228 (1157)
T ss_pred CCc-cHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcc
Confidence 345 8999999999988752 444667888999999999999999999987653210 00
Q ss_pred C----------------CchhH-hHHH---------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCCh
Q 004829 301 G----------------QDHAL-AKFA---------------GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDH 348 (728)
Q Consensus 301 ~----------------~~~~~-~~~~---------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 348 (728)
. +.... .... ....+|.++...|++++|+..|+++++. .|
T Consensus 229 ~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--------~P 300 (1157)
T PRK11447 229 PVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA--------NP 300 (1157)
T ss_pred CCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CC
Confidence 0 00000 0000 0124488899999999999999999998 78
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 349 RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASI------EEAADRRLMGLICDSKGDYEAALEHYVLASMS 422 (728)
Q Consensus 349 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 422 (728)
....++..+|.+|...|++++|+.+|++++++.+........ ........+|.++...|++++|+..|++++.+
T Consensus 301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888999999999999999999999999999887654321100 01112345688899999999999999999876
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh----------cCCCCHH-------------------
Q 004829 423 MAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSA----------KGENHPA------------------- 473 (728)
Q Consensus 423 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~------------------- 473 (728)
.|....++..+|.++...|++++|+.+|++++++.... +....+.
T Consensus 381 ------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 381 ------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred ------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHH
Confidence 45666789999999999999999999999999762110 0000000
Q ss_pred -----HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 474 -----VASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY 548 (728)
Q Consensus 474 -----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 548 (728)
....+..+|.++...|++++|+.+|++++++. |....++..+|.+|...|++++|+..|+++++..
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---------P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD---------PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 01123346677778899999999999999883 3345678999999999999999999999998765
Q ss_pred hcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------------------------HHHHH
Q 004829 549 GKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAI-------------------------------------SKFRT 591 (728)
Q Consensus 549 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------------------------------------~~~~~ 591 (728)
+.. ...++.++.++...+++++|+..++++. .+++.
T Consensus 526 P~~-------~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~ 598 (1157)
T PRK11447 526 PND-------PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ 598 (1157)
T ss_pred CCC-------HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 543 2344555666666666666666655421 11111
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 592 SGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG 671 (728)
Q Consensus 592 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 671 (728)
.+.....+..+|.++...|++++|+..|++++.. .|+...++..++.+|...|++++|+.+|++++.
T Consensus 599 -----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 599 -----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred -----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 1112346788999999999999999999999998 788888999999999999999999999998876
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829 672 MREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ 718 (728)
Q Consensus 672 ~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~ 718 (728)
..|+...++..+|.++..+|++++|+ ..++.++...+.
T Consensus 666 --------~~p~~~~~~~~la~~~~~~g~~~eA~-~~~~~al~~~~~ 703 (1157)
T PRK11447 666 --------TANDSLNTQRRVALAWAALGDTAAAQ-RTFNRLIPQAKS 703 (1157)
T ss_pred --------cCCCChHHHHHHHHHHHhCCCHHHHH-HHHHHHhhhCcc
Confidence 34666778888999999999999999 888888876544
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=9.5e-28 Score=286.83 Aligned_cols=418 Identities=14% Similarity=0.126 Sum_probs=306.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchh-
Q 004829 227 KQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHA- 305 (728)
Q Consensus 227 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~- 305 (728)
.+|..++..| ++++|+..|++++... |....++..+|.+|...|++++|+.+|++++++.+........
T Consensus 274 ~~G~~~~~~g-~~~~A~~~l~~aL~~~---------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 274 AQGLAAVDSG-QGGKAIPELQQAVRAN---------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 4478888897 9999999999999862 4456779999999999999999999999999875321111000
Q ss_pred ----HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829 306 ----LAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIH 381 (728)
Q Consensus 306 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 381 (728)
.........+|.++...|++++|+.+|++++.+ +|....++..+|.++...|++++|+.+|++++++.
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~ 415 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD 415 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 001223456788999999999999999999998 67778899999999999999999999999999886
Q ss_pred HHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC---CChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004829 382 RENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANG---HELDVASIDCSIGDAYLSLARFDEAIFSYHK 458 (728)
Q Consensus 382 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 458 (728)
+... .++..++.++. .+++++|+.++........... ........+..+|.++...|++++|+..|++
T Consensus 416 p~~~--------~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~ 486 (1157)
T PRK11447 416 PGNT--------NAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQ 486 (1157)
T ss_pred CCCH--------HHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5432 24566666664 3567777776654321110000 0011123456677777778888888888888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 004829 459 ALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAV 538 (728)
Q Consensus 459 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 538 (728)
++++ .|....+++.+|.+|...|++++|+..+++++.... .....++.++.++...+++++|+
T Consensus 487 Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P---------~~~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 487 RLAL--------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP---------NDPEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 7777 666667777788888888888888888877776521 12233444444455555555555
Q ss_pred HHHHHH-------------------------------------HHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHH
Q 004829 539 KLLNKA-------------------------------------LKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNT 581 (728)
Q Consensus 539 ~~~~~a-------------------------------------l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 581 (728)
.+++++ +.++...+. ...++..+|.++...|++++|+.+
T Consensus 550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~----~~~~~~~La~~~~~~g~~~~A~~~ 625 (1157)
T PRK11447 550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP----STRIDLTLADWAQQRGDYAAARAA 625 (1157)
T ss_pred HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC----CchHHHHHHHHHHHcCCHHHHHHH
Confidence 444331 111111111 134567899999999999999999
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH
Q 004829 582 LKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDD 661 (728)
Q Consensus 582 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 661 (728)
|+++++. .+....++..++.+|...|++++|+..|++++.. .|+...++..+|.++..+|++++
T Consensus 626 y~~al~~--------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~e 689 (1157)
T PRK11447 626 YQRVLTR--------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTAA 689 (1157)
T ss_pred HHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHHH
Confidence 9999987 3334678999999999999999999999998876 66667788999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCh---HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHh
Q 004829 662 AIEILEYVVGMREEKLGTANP---DVEDEKRRLAELLKEAGRVRNRKSRSLVTFLD 714 (728)
Q Consensus 662 A~~~~~~al~~~~~~~~~~~p---~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~ 714 (728)
|+.+|++++... +.+| ....++..+|.++...|++++|+ ..++.++.
T Consensus 690 A~~~~~~al~~~-----~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~-~~y~~Al~ 739 (1157)
T PRK11447 690 AQRTFNRLIPQA-----KSQPPSMESALVLRDAARFEAQTGQPQQAL-ETYKDAMV 739 (1157)
T ss_pred HHHHHHHHhhhC-----ccCCcchhhHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Confidence 999999998753 1222 24566778899999999999999 77777764
No 11
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.97 E-value=2.9e-27 Score=246.59 Aligned_cols=295 Identities=20% Similarity=0.283 Sum_probs=274.3
Q ss_pred HhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 424 AANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALK 503 (728)
Q Consensus 424 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (728)
......|....+...++..|..+|+|+.|+..++.++++..+..|.+++.....+..+|.+|..++++.+|+..|++|+.
T Consensus 190 ~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~ 269 (508)
T KOG1840|consen 190 GLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT 269 (508)
T ss_pred hcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34456788888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829 504 IYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS-TIAGIEAQMGVMYYMTGNYSDSYNTL 582 (728)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~ 582 (728)
+.+... |.+++..+.++.+||.+|...|++++|..++++|++|.....+..+ .++..+.+++.++...+++++|..++
T Consensus 270 i~e~~~-G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~ 348 (508)
T KOG1840|consen 270 IREEVF-GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLL 348 (508)
T ss_pred HHHHhc-CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 999877 7889999999999999999999999999999999999998666544 67778899999999999999999999
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004829 583 KSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDA 662 (728)
Q Consensus 583 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 662 (728)
+++++++....+..++..+..+.+||.+|..+|++++|.++|++|+.+.++..+..++.....+.+||..|.+.+++.+|
T Consensus 349 q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a 428 (508)
T KOG1840|consen 349 QKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEA 428 (508)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchH
Confidence 99999999888777878899999999999999999999999999999999999888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829 663 IEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK 721 (728)
Q Consensus 663 ~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~ 721 (728)
...|.++..+. ...|++||++...+.+|+.+|..+|++++|+ ++.+.++........
T Consensus 429 ~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~-~~~~~~~~~~~~~~~ 485 (508)
T KOG1840|consen 429 EQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAE-ELEEKVLNAREQRLG 485 (508)
T ss_pred HHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHH-HHHHHHHHHHHHcCC
Confidence 99999999999 9999999999999999999999999999999 988888866554433
No 12
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.1e-27 Score=231.11 Aligned_cols=398 Identities=16% Similarity=0.153 Sum_probs=310.7
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhh
Q 004829 220 ALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLE 299 (728)
Q Consensus 220 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 299 (728)
..+..+...|+.++..| +|++||.+|.+|+.+. |+....|.+++.||...|+|++.++...+++++.
T Consensus 113 k~A~~lK~~GN~~f~~k-kY~eAIkyY~~AI~l~---------p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--- 179 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNK-KYDEAIKYYTQAIELC---------PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--- 179 (606)
T ss_pred HHHHHHHhhhhhhhhcc-cHHHHHHHHHHHHhcC---------CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC---
Confidence 46778999999999997 9999999999999974 2235569999999999999999999999999986
Q ss_pred cCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHH------------------HHHHH-----HHHHcCC-CChHH-----
Q 004829 300 DGQDHALAKFAGCMQLGDTYAMLGQIENSILCYT------------------AGLEI-----QRQVLGE-TDHRV----- 350 (728)
Q Consensus 300 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------------------~al~~-----~~~~~~~-~~~~~----- 350 (728)
+++ ..++++.+.++..+|++.+|+.... +.|.. ....++. ..|..
T Consensus 180 --P~Y----~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~f 253 (606)
T KOG0547|consen 180 --PDY----VKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATF 253 (606)
T ss_pred --cHH----HHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHH
Confidence 333 4569999999999999999875432 22211 1112221 11111
Q ss_pred HHHHH--------------------HHHHH--HHHhC---CHHHHHHHHHHHHHHHHHcCCC-----CcHHHHHHHHHHH
Q 004829 351 GETCR--------------------YVAEA--HVQSL---QFDEAEKICQMALDIHRENTSP-----ASIEEAADRRLMG 400 (728)
Q Consensus 351 ~~~~~--------------------~la~~--~~~~g---~~~~A~~~~~~al~~~~~~~~~-----~~~~~a~~~~~lg 400 (728)
...|+ .+... +...+ .|..|...+.+........... ..-..+.++...|
T Consensus 254 i~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 254 IASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred HHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 11111 01111 11112 4666666666555443332221 1233467788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004829 401 LICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVR 480 (728)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 480 (728)
..++..|++-.|...|..++.+ ++.....|..+|.+|....+.++....|.+|..+ +|....+|+.
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyH 399 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKL------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYH 399 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhc------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHh
Confidence 9999999999999999999876 4555556899999999999999999999999999 8999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHH
Q 004829 481 LADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAG 560 (728)
Q Consensus 481 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 560 (728)
.|++++-+++|++|+..|++++.+ .|..+..+..++.+.+++++++++...|+.+...++.. +.
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L---------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~-------~E 463 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISL---------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC-------PE 463 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc---------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------ch
Confidence 999999999999999999999999 67788999999999999999999999999999998887 46
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829 561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACV-QRYTINEAADLFEEARTILEKEYGPYH 639 (728)
Q Consensus 561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~ 639 (728)
++...|.++..+++|++|++.|..|+++-....... ..+..+...|.+.. -.+++..|+.++++|+++ +
T Consensus 464 vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~--v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------D 533 (606)
T KOG0547|consen 464 VYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLII--VNAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------D 533 (606)
T ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccc--ccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------C
Confidence 788899999999999999999999999854321110 01223333333332 247999999999999999 9
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004829 640 HDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK 676 (728)
Q Consensus 640 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~ 676 (728)
|..-.++..||.+..++|+.++|+++|++++.+.+..
T Consensus 534 pkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 534 PKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999987653
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.9e-25 Score=235.07 Aligned_cols=434 Identities=14% Similarity=0.170 Sum_probs=353.4
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHH
Q 004829 210 DPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVL 289 (728)
Q Consensus 210 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 289 (728)
.|.-....+|.....|+..|...+..| +|..|+.+|.+++.+.+... ++ ....+|.|++.+|+.+.|+..|
T Consensus 152 ~F~~Vl~~sp~Nil~LlGkA~i~ynkk-dY~~al~yyk~al~inp~~~---aD-----~rIgig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 152 QFHFVLKQSPDNILALLGKARIAYNKK-DYRGALKYYKKALRINPACK---AD-----VRIGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHhhCCcchHHHHHHHHHHhccc-cHHHHHHHHHHHHhcCcccC---CC-----ccchhhhHHHhccchhhHHHHH
Confidence 455566788999999999999999997 99999999999998765432 22 2446799999999999999999
Q ss_pred HHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCC
Q 004829 290 ERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLG---QIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQ 366 (728)
Q Consensus 290 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 366 (728)
++++++. +. .+.++..||.+-.... .+..+...+.++... .+..+.++..|+..|+..|+
T Consensus 223 ~ralqLd-----p~----~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--------n~~nP~~l~~LAn~fyfK~d 285 (1018)
T KOG2002|consen 223 ERALQLD-----PT----CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--------NNENPVALNHLANHFYFKKD 285 (1018)
T ss_pred HHHHhcC-----hh----hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--------cCCCcHHHHHHHHHHhhccc
Confidence 9999986 32 3345667776665544 456666777766666 66777899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHh
Q 004829 367 FDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSL 446 (728)
Q Consensus 367 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 446 (728)
|..+..+...++.... .....+..++.+|..|..+|+|++|..+|.+++... +......++.+|.+|+..
T Consensus 286 y~~v~~la~~ai~~t~-----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTE-----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----NDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CCCccccccchhHHHHHh
Confidence 9999999998886542 234556789999999999999999999999987542 122466788999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHH
Q 004829 447 ARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIG----KLRDSKSYCENALKIYGKPNHGIPSEEIASGLI 522 (728)
Q Consensus 447 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 522 (728)
|+++.|+.+|++++.. .|....++..||.+|...+ ..+.|..++.+++.. .+....+|.
T Consensus 356 ~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~---------~~~d~~a~l 418 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ---------TPVDSEAWL 418 (1018)
T ss_pred chHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc---------ccccHHHHH
Confidence 9999999999999998 8888899999999999886 567788888888777 345678999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc--HHH
Q 004829 523 DIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS--ALF 600 (728)
Q Consensus 523 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~ 600 (728)
.++.++....-+. ++.+|..|+.++...... .-..+++++|..++..|++.+|...|.+|+..+........ ...
T Consensus 419 ~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~ 495 (1018)
T KOG2002|consen 419 ELAQLLEQTDPWA-SLDAYGNALDILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTN 495 (1018)
T ss_pred HHHHHHHhcChHH-HHHHHHHHHHHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccch
Confidence 9999988765554 499999999888776333 33678899999999999999999999999998553322211 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004829 601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTA 680 (728)
Q Consensus 601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 680 (728)
....+++|.++...++++.|.+.|...+.. ||....++..||......+...+|..++..++.+.
T Consensus 496 lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--------hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d------- 560 (1018)
T KOG2002|consen 496 LTLKYNLARLLEELHDTEVAEEMYKSILKE--------HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID------- 560 (1018)
T ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--------CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-------
Confidence 456899999999999999999999999998 99999999999988888999999999999999853
Q ss_pred ChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhc
Q 004829 681 NPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSN 716 (728)
Q Consensus 681 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~ 716 (728)
...+.++..+|.++.....+..|. +-++..+...
T Consensus 561 -~~np~arsl~G~~~l~k~~~~~a~-k~f~~i~~~~ 594 (1018)
T KOG2002|consen 561 -SSNPNARSLLGNLHLKKSEWKPAK-KKFETILKKT 594 (1018)
T ss_pred -cCCcHHHHHHHHHHHhhhhhcccc-cHHHHHHhhh
Confidence 445567778899999999999998 6556555443
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=8.1e-25 Score=244.89 Aligned_cols=362 Identities=14% Similarity=0.029 Sum_probs=281.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCCh
Q 004829 269 LHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDH 348 (728)
Q Consensus 269 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 348 (728)
+...+..+...|++++|+..++.++... +.++.. ++.+|.+....|++++|+..|++++.. +|
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-----p~~~~~----l~~l~~~~l~~g~~~~A~~~l~~~l~~--------~P 107 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-----KNGRDL----LRRWVISPLASSQPDAVLQVVNKLLAV--------NV 107 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-----CCchhH----HHHHhhhHhhcCCHHHHHHHHHHHHHh--------CC
Confidence 4445777888899999999999888765 555443 888888888999999999999999988 78
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 004829 349 RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGH 428 (728)
Q Consensus 349 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 428 (728)
....++..+|.++...|++++|+..|++++.+.+.. ..++..++.++...|++++|+..+.+++..
T Consensus 108 ~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~--------~~a~~~la~~l~~~g~~~eA~~~~~~~~~~------ 173 (656)
T PRK15174 108 CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGN--------SQIFALHLRTLVLMDKELQAISLARTQAQE------ 173 (656)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--------HHHHHHHHHHHHHCCChHHHHHHHHHHHHh------
Confidence 888889999999999999999999999999876543 235778899999999999999988866543
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829 429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP 508 (728)
Q Consensus 429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 508 (728)
.|....++..++ .+...|++++|+..+++++... .+........++.++...|++++|+..|++++...
T Consensus 174 ~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~-------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--- 242 (656)
T PRK15174 174 VPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFF-------ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--- 242 (656)
T ss_pred CCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC-------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---
Confidence 222333444443 4788899999999988887651 11222334566788889999999999999998872
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829 509 NHGIPSEEIASGLIDIAAIYQSMNELEQ----AVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKS 584 (728)
Q Consensus 509 ~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 584 (728)
|....++..+|.++...|++++ |+..|++++.+.+.. ..++..+|.++..+|++++|+.++++
T Consensus 243 ------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~-------~~a~~~lg~~l~~~g~~~eA~~~l~~ 309 (656)
T PRK15174 243 ------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN-------VRIVTLYADALIRTGQNEKAIPLLQQ 309 (656)
T ss_pred ------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3346778889999999999885 788999998876544 56778899999999999999999999
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004829 585 AISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE 664 (728)
Q Consensus 585 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 664 (728)
++.+ .+....++..+|.++...|++++|+..|++++.. +|.....+..+|.++...|++++|+.
T Consensus 310 al~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 310 SLAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHH
Confidence 9886 2334567888999999999999999999998887 66666666777889999999999999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHH
Q 004829 665 ILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNR 704 (728)
Q Consensus 665 ~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A 704 (728)
.|+++++...... .+...++...+...+...+...+.
T Consensus 374 ~l~~al~~~P~~~---~~~~~ea~~~~~~~~~~~~~~~~~ 410 (656)
T PRK15174 374 VFEHYIQARASHL---PQSFEEGLLALDGQISAVNLPPER 410 (656)
T ss_pred HHHHHHHhChhhc---hhhHHHHHHHHHHHHHhcCCccch
Confidence 9999998754432 233445666666666666655544
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=4.5e-25 Score=246.93 Aligned_cols=339 Identities=12% Similarity=0.079 Sum_probs=290.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829 312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE 391 (728)
Q Consensus 312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 391 (728)
+...+..+...|++++|+..++..+.. .|....++..+|.+....|++++|+..|++++.+.|...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~--------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~------ 110 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLT--------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP------ 110 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHh--------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh------
Confidence 456677788899999999999999988 788889999999999999999999999999999877653
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829 392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH 471 (728)
Q Consensus 392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 471 (728)
.++..+|.++...|++++|+..|++++.+ .|....++..++.++...|++++|+..+++++.. .
T Consensus 111 --~a~~~la~~l~~~g~~~~Ai~~l~~Al~l------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--------~ 174 (656)
T PRK15174 111 --EDVLLVASVLLKSKQYATVADLAEQAWLA------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE--------V 174 (656)
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------C
Confidence 35889999999999999999999999876 5667788999999999999999999999988776 4
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829 472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 472 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 551 (728)
|.....+..++ .+...|++++|+..+++++..... ........++.++...|++++|+..|++++...+..
T Consensus 175 P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~--------~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~ 245 (656)
T PRK15174 175 PPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFAL--------ERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG 245 (656)
T ss_pred CCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC--------cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 44455555554 478899999999999998776311 112234567888999999999999999999875443
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829 552 PGQQSTIAGIEAQMGVMYYMTGNYSD----SYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEA 627 (728)
Q Consensus 552 ~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 627 (728)
..++..+|.+|...|++++ |+..|++++.+ .+....++..+|.++...|++++|+.+|+++
T Consensus 246 -------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a 310 (656)
T PRK15174 246 -------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--------NSDNVRIVTLYADALIRTGQNEKAIPLLQQS 310 (656)
T ss_pred -------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5677899999999999996 89999999987 3345688999999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHH
Q 004829 628 RTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSR 707 (728)
Q Consensus 628 l~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~ 707 (728)
+.+ +|+...++..+|.+|...|++++|+..|++++.. +|.....+..++.++...|++++|+ .
T Consensus 311 l~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~-~ 373 (656)
T PRK15174 311 LAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAE-S 373 (656)
T ss_pred HHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHH-H
Confidence 998 7788889999999999999999999999999883 4666667777899999999999999 9
Q ss_pred HHHHHHhhcccccc
Q 004829 708 SLVTFLDSNSQNLK 721 (728)
Q Consensus 708 ~l~~ll~~~~~~~~ 721 (728)
.++.++..+|....
T Consensus 374 ~l~~al~~~P~~~~ 387 (656)
T PRK15174 374 VFEHYIQARASHLP 387 (656)
T ss_pred HHHHHHHhChhhch
Confidence 99999999888653
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=7.7e-24 Score=242.20 Aligned_cols=438 Identities=11% Similarity=-0.011 Sum_probs=329.2
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhh
Q 004829 216 LGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI 295 (728)
Q Consensus 216 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 295 (728)
...|.....+.....++...| ++++|+..|.++... .+..+.++..+|.++...|++++|+.+|++++++
T Consensus 9 ~~~~~~~~~~~d~~~ia~~~g-~~~~A~~~~~~~~~~---------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 9 LKSALSNNQIADWLQIALWAG-QDAEVITVYNRYRVH---------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred hccCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345556666677777888887 999999999888753 1334666889999999999999999999999987
Q ss_pred hhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004829 296 PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQ 375 (728)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 375 (728)
. +..+. ++..++.++...|++++|+..+++++.. .|.... +..+|.++...|++++|+..++
T Consensus 79 ~-----P~~~~----a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l~ 140 (765)
T PRK10049 79 E-----PQNDD----YQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAMT 140 (765)
T ss_pred C-----CCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence 5 44433 3789999999999999999999999998 677777 9999999999999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH-----HhCCH-
Q 004829 376 MALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYL-----SLARF- 449 (728)
Q Consensus 376 ~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~- 449 (728)
+++.+.|... .++..++.++...|..+.|+..++++.... .. ...........+..++. ..+++
T Consensus 141 ~al~~~P~~~--------~~~~~la~~l~~~~~~e~Al~~l~~~~~~p-~~-~~~l~~~~~~~~~r~~~~~~~~~~~r~~ 210 (765)
T PRK10049 141 QALPRAPQTQ--------QYPTEYVQALRNNRLSAPALGAIDDANLTP-AE-KRDLEADAAAELVRLSFMPTRSEKERYA 210 (765)
T ss_pred HHHHhCCCCH--------HHHHHHHHHHHHCCChHHHHHHHHhCCCCH-HH-HHHHHHHHHHHHHHhhcccccChhHHHH
Confidence 9999876542 346678999999999999999887654210 00 00000111122222222 22345
Q ss_pred --HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHH
Q 004829 450 --DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAI 527 (728)
Q Consensus 450 --~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 527 (728)
++|+..++.++...... ....+....+......++...|++++|+..|+++++... ..|..+.. .+|.+
T Consensus 211 ~ad~Al~~~~~ll~~~~~~-p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~------~~P~~a~~--~la~~ 281 (765)
T PRK10049 211 IADRALAQYDALEALWHDN-PDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQ------IIPPWAQR--WVASA 281 (765)
T ss_pred HHHHHHHHHHHHHhhcccC-CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC------CCCHHHHH--HHHHH
Confidence 67888888887664322 112334444444423344677999999999999877621 12333333 36889
Q ss_pred HHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-------CCCCcHHH
Q 004829 528 YQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS-------GEKKSALF 600 (728)
Q Consensus 528 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~~ 600 (728)
|..+|++++|+.+|+++++..+.. ..........++.++..+|++++|+.+++++....... ........
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~---~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETI---ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCC---CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 999999999999999988643221 11112344567778899999999999999988753210 00001123
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004829 601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTA 680 (728)
Q Consensus 601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 680 (728)
..++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..+++++.+
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l-------- 422 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYASVLQARGWPRAAENELKKAEVL-------- 422 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------
Confidence 457788999999999999999999999998 7888889999999999999999999999999994
Q ss_pred ChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829 681 NPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNL 720 (728)
Q Consensus 681 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~ 720 (728)
+|+...+++.+|.++..+|++++|. ..++.++...|++.
T Consensus 423 ~Pd~~~l~~~~a~~al~~~~~~~A~-~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 423 EPRNINLEVEQAWTALDLQEWRQMD-VLTDDVVAREPQDP 461 (765)
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCCCH
Confidence 4888889999999999999999999 99999999988764
No 17
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.6e-24 Score=208.53 Aligned_cols=389 Identities=18% Similarity=0.143 Sum_probs=296.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829 266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE 345 (728)
Q Consensus 266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 345 (728)
+..+-+.|.-++..|+|++||.+|.+|+++. ++.|.. |.+++.||...|+|++.++...+++++
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~-----p~epiF----YsNraAcY~~lgd~~~Vied~TkALEl------- 178 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELC-----PDEPIF----YSNRAACYESLGDWEKVIEDCTKALEL------- 178 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcC-----CCCchh----hhhHHHHHHHHhhHHHHHHHHHHHhhc-------
Confidence 4446678999999999999999999999987 444443 899999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHH------------------HHHH---------HHHcCCCC--cHHHHHHH
Q 004829 346 TDHRVGETCRYVAEAHVQSLQFDEAEKICQM------------------ALDI---------HRENTSPA--SIEEAADR 396 (728)
Q Consensus 346 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------------------al~~---------~~~~~~~~--~~~~a~~~ 396 (728)
+|....+++..+.++..+|++++|+.-..- .|.. ...+..+. .......|
T Consensus 179 -~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~sy 257 (606)
T KOG0547|consen 179 -NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASY 257 (606)
T ss_pred -CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 899999999999999999999998764321 1111 01011110 00001111
Q ss_pred HH--------------------H--HHHHHHcC---CHHHHHHHHHHHHHHHHhcCC-------ChhHHHHHHHHHHHHH
Q 004829 397 RL--------------------M--GLICDSKG---DYEAALEHYVLASMSMAANGH-------ELDVASIDCSIGDAYL 444 (728)
Q Consensus 397 ~~--------------------l--g~~~~~~g---~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~la~~~~ 444 (728)
+. + +.-+...+ .|..|...+.+.......... -...+.++...|..++
T Consensus 258 f~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 258 FGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred HhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 10 0 01111111 455555555554433221111 1234778888999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHH
Q 004829 445 SLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDI 524 (728)
Q Consensus 445 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 524 (728)
..|++-.|...|++++.+ +|.....|..+|.+|....+.++-...|.+|.++ +|..+.+|+..
T Consensus 338 L~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l---------dp~n~dvYyHR 400 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL---------DPENPDVYYHR 400 (606)
T ss_pred hcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc---------CCCCCchhHhH
Confidence 999999999999999998 7777777999999999999999999999999998 45566789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Q 004829 525 AAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIAL 604 (728)
Q Consensus 525 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 604 (728)
|.+++-++++++|+.-|++++.+.+.. +..+..++.+.+++++++++...|+.+...+ |..+.++
T Consensus 401 gQm~flL~q~e~A~aDF~Kai~L~pe~-------~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--------P~~~Evy 465 (606)
T KOG0547|consen 401 GQMRFLLQQYEEAIADFQKAISLDPEN-------AYAYIQLCCALYRQHKIAESMKTFEEAKKKF--------PNCPEVY 465 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCchHH
Confidence 999999999999999999999987766 5677889999999999999999999999874 3345788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHHcCCCChH
Q 004829 605 NQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTY-DAMGRIDDAIEILEYVVGMREEKLGTANPD 683 (728)
Q Consensus 605 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~p~ 683 (728)
...|.++..++++++|++.|..|+++-.....- +. .+..+.+-|.+. .-.+++..|+.++++|+++ +|.
T Consensus 466 ~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~-~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpk 535 (606)
T KOG0547|consen 466 NLFAEILTDQQQFDKAVKQYDKAIELEPREHLI-IV-NAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPK 535 (606)
T ss_pred HHHHHHHhhHHhHHHHHHHHHHHHhhccccccc-cc-cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------Cch
Confidence 899999999999999999999999983221100 00 122222222222 1248999999999999984 599
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHh
Q 004829 684 VEDEKRRLAELLKEAGRVRNRKSRSLVTFLD 714 (728)
Q Consensus 684 ~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~ 714 (728)
...++..||.+..++|+.++|+ .+++....
T Consensus 536 ce~A~~tlaq~~lQ~~~i~eAi-elFEksa~ 565 (606)
T KOG0547|consen 536 CEQAYETLAQFELQRGKIDEAI-ELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH-HHHHHHHH
Confidence 9999999999999999999999 77776543
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=2.3e-22 Score=229.71 Aligned_cols=447 Identities=12% Similarity=0.013 Sum_probs=324.6
Q ss_pred CCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHH
Q 004829 207 GAEDPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAI 286 (728)
Q Consensus 207 ~~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 286 (728)
.++.+.....-+|+...+++.++..++..| ++++|+.++++++.. +|.....+..++.+ +++++|+
T Consensus 63 A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g-~~~~A~~~~~kAv~l---------dP~n~~~~~~La~i----~~~~kA~ 128 (987)
T PRK09782 63 AIREFEYIHQQVPDNIPLTLYLAEAYRHFG-HDDRARLLLEDQLKR---------HPGDARLERSLAAI----PVEVKSV 128 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhc---------CcccHHHHHHHHHh----ccChhHH
Confidence 345666777788988999999999999997 999999999999985 23334444445554 8899999
Q ss_pred HHHHHhhhhhhhhcCCchhHh-------------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829 287 PVLERSVEIPVLEDGQDHALA-------------------------------KFAGCMQLGDTYAMLGQIENSILCYTAG 335 (728)
Q Consensus 287 ~~~~~al~~~~~~~~~~~~~~-------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a 335 (728)
..|++++...+.......... .....+.++.+|..+|++++|+..+.+.
T Consensus 129 ~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 129 TTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999998877532111110000 0112445588999999999999999887
Q ss_pred HHHHH--------------HH---------cCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCC----
Q 004829 336 LEIQR--------------QV---------LGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA---- 388 (728)
Q Consensus 336 l~~~~--------------~~---------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---- 388 (728)
++... .. ..+.-.....++..++..|...|+.++|...+++.-...+..+...
T Consensus 209 ~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~ 288 (987)
T PRK09782 209 RQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLY 288 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHH
Confidence 65410 00 0000012233445677778888888888877655322211100000
Q ss_pred -----------------------------------------------------c--------------------------
Q 004829 389 -----------------------------------------------------S-------------------------- 389 (728)
Q Consensus 389 -----------------------------------------------------~-------------------------- 389 (728)
.
T Consensus 289 ~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 368 (987)
T PRK09782 289 LLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLL 368 (987)
T ss_pred HHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHH
Confidence 0
Q ss_pred ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------HH-------Hhc----------------------
Q 004829 390 ----IEEAADRRLMGLICDSKGDYEAALEHYVLASM----------SM-------AAN---------------------- 426 (728)
Q Consensus 390 ----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~----------~~-------~~~---------------------- 426 (728)
+.....+..++......|++++|...|+++.. +. ...
T Consensus 369 y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 369 YQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence 00012234455666678888888888876643 11 000
Q ss_pred --------------------CCChh--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004829 427 --------------------GHELD--VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADL 484 (728)
Q Consensus 427 --------------------~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 484 (728)
+..|. ...+++++|.++.. +++.+|+..|.+++.. .|.. .....+|.+
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--------~Pd~-~~~L~lA~a 518 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--------QPDA-WQHRAVAYQ 518 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--------CCch-HHHHHHHHH
Confidence 01123 56678889988887 8999999999999887 4543 236667788
Q ss_pred HHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Q 004829 485 YHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQ 564 (728)
Q Consensus 485 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 564 (728)
+...|++++|+..|++++... .. ...+..+|.++...|++++|+.+|++++...+.. ...+..
T Consensus 519 l~~~Gr~eeAi~~~rka~~~~------p~----~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~-------~~l~~~ 581 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLHD------MS----NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD-------NALYWW 581 (987)
T ss_pred HHHCCCHHHHHHHHHHHhccC------CC----cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc-------HHHHHH
Confidence 889999999999999875441 11 1236788999999999999999999998764322 334445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004829 565 MGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLG 644 (728)
Q Consensus 565 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 644 (728)
++......|++++|+..|++++++ .+. ..++..+|.++.+.|++++|+..|++++.+ +|+...
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~ 644 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNI--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALEL--------EPNNSN 644 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH
Confidence 666666779999999999999987 233 578899999999999999999999999999 888889
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829 645 VYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNL 720 (728)
Q Consensus 645 ~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~ 720 (728)
++.++|.++...|++++|+.+|++++++ +|+...++.++|.++..+|++++|+ ..++.+++..|...
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~-~~l~~Al~l~P~~a 711 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQ-HYARLVIDDIDNQA 711 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhcCCCCc
Confidence 9999999999999999999999999994 4888899999999999999999999 99999999988754
No 19
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.92 E-value=8.9e-24 Score=205.84 Aligned_cols=423 Identities=14% Similarity=0.089 Sum_probs=235.1
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhc
Q 004829 221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLED 300 (728)
Q Consensus 221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 300 (728)
.-.+|+.++..|-.. +.+.+|+..|+-.++ ..-.|.....-.++|.++++..+|.+|+.+|+.++...+.
T Consensus 200 tfsvl~nlaqqy~~n-dm~~ealntyeiivk-------nkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvps-- 269 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEAN-DMTAEALNTYEIIVK-------NKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPS-- 269 (840)
T ss_pred hHHHHHHHHHHhhhh-HHHHHHhhhhhhhhc-------ccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccc--
Confidence 356788899888777 378888888877664 3333444555668999999999999999999999976432
Q ss_pred CCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829 301 GQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDI 380 (728)
Q Consensus 301 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 380 (728)
......+.++.++|..+.+.|+|+.|+..|+.+++. .|... +-++|..|++..|+-++-.+.|++.+.+
T Consensus 270 --ink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--------~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~i 338 (840)
T KOG2003|consen 270 --INKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--------APNFI-AALNLIICAFAIGDAEKMKEAFQKLIDI 338 (840)
T ss_pred --cchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--------CccHH-hhhhhhhhheecCcHHHHHHHHHHHhcC
Confidence 222446678999999999999999999999999988 56654 4456778888999999999999888765
Q ss_pred HHHcC---------CCCcHHHH----------------------------------------------------------
Q 004829 381 HRENT---------SPASIEEA---------------------------------------------------------- 393 (728)
Q Consensus 381 ~~~~~---------~~~~~~~a---------------------------------------------------------- 393 (728)
-.... +++.....
T Consensus 339 p~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la 418 (840)
T KOG2003|consen 339 PGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELA 418 (840)
T ss_pred CCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhh
Confidence 32111 11100000
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHhcCCC
Q 004829 394 -ADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLA--RFDEAIFSYHKALTAFKSAKGEN 470 (728)
Q Consensus 394 -~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~ 470 (728)
..-.+.+..+.+.|+++.|++.+.-. .. .+......+-.+|..+++.+| ++..|..+...++.+
T Consensus 419 ~dlei~ka~~~lk~~d~~~aieilkv~----~~-kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~-------- 485 (840)
T KOG2003|consen 419 IDLEINKAGELLKNGDIEGAIEILKVF----EK-KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI-------- 485 (840)
T ss_pred hhhhhhHHHHHHhccCHHHHHHHHHHH----Hh-ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--------
Confidence 00112234556777777777665321 11 111111222233333333322 333444444444333
Q ss_pred CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
+...+.++.+.|.+-+..|++++|.+.|++++.- +.....+++++|..+..+|+.++|+.+|-+.-.+...
T Consensus 486 dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n---------dasc~ealfniglt~e~~~~ldeald~f~klh~il~n 556 (840)
T KOG2003|consen 486 DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN---------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN 556 (840)
T ss_pred cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC---------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh
Confidence 3333444444455555555555555555555433 2233445555555555555555555555554444443
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
. +.++..++.+|..+.+..+|++++-++..+. +....++..||.+|-+.|+..+|..++-.....
T Consensus 557 n-------~evl~qianiye~led~aqaie~~~q~~sli--------p~dp~ilskl~dlydqegdksqafq~~ydsyry 621 (840)
T KOG2003|consen 557 N-------AEVLVQIANIYELLEDPAQAIELLMQANSLI--------PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY 621 (840)
T ss_pred h-------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccC--------CCCHHHHHHHHHHhhcccchhhhhhhhhhcccc
Confidence 3 3444555555555555555555555544431 111234444555555555555555444444443
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 004829 631 LEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLV 710 (728)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~ 710 (728)
.|...++..+||..|....-+++|+.+|+++.-+ .|........++.++.+.|+|..|. ..++
T Consensus 622 --------fp~nie~iewl~ayyidtqf~ekai~y~ekaali--------qp~~~kwqlmiasc~rrsgnyqka~-d~yk 684 (840)
T KOG2003|consen 622 --------FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQSKWQLMIASCFRRSGNYQKAF-DLYK 684 (840)
T ss_pred --------cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHhcccHHHHH-HHHH
Confidence 3444444444555555555555555555554432 2444444445555555555555555 4444
Q ss_pred HHHhhccc
Q 004829 711 TFLDSNSQ 718 (728)
Q Consensus 711 ~ll~~~~~ 718 (728)
......|+
T Consensus 685 ~~hrkfpe 692 (840)
T KOG2003|consen 685 DIHRKFPE 692 (840)
T ss_pred HHHHhCcc
Confidence 44444444
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=6.1e-22 Score=226.63 Aligned_cols=402 Identities=13% Similarity=0.011 Sum_probs=304.0
Q ss_pred cccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 004829 212 LAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLER 291 (728)
Q Consensus 212 ~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 291 (728)
......+|..+..+..+|..+...| ++++|+.+|++++... |....++..++.++...|++++|+..+++
T Consensus 39 ~~~~~~~~~~a~~~~~lA~~~~~~g-~~~~A~~~~~~al~~~---------P~~~~a~~~la~~l~~~g~~~eA~~~l~~ 108 (765)
T PRK10049 39 NRYRVHMQLPARGYAAVAVAYRNLK-QWQNSLTLWQKALSLE---------PQNDDYQRGLILTLADAGQYDEALVKAKQ 108 (765)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3334456778888999999999997 9999999999999862 33455677899999999999999999999
Q ss_pred hhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHH
Q 004829 292 SVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAE 371 (728)
Q Consensus 292 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 371 (728)
++... +..+ . +..+|.++...|++++|+..++++++. .|....++..++.++...+..++|+
T Consensus 109 ~l~~~-----P~~~----~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 109 LVSGA-----PDKA----N-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHhC-----CCCH----H-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHH
Confidence 99875 3332 3 778899999999999999999999999 7888888889999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHH
Q 004829 372 KICQMALDIHRENTSPASIEEAADRRLMGLICD-----SKGDY---EAALEHYVLASMSMAANGH-ELDVASIDCSIGDA 442 (728)
Q Consensus 372 ~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~-----~~g~~---~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~ 442 (728)
..++++.. .|.... .........+..+.. ..+++ ++|+..++.++........ .+....+.......
T Consensus 171 ~~l~~~~~-~p~~~~---~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 171 GAIDDANL-TPAEKR---DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHhCCC-CHHHHH---HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 98887664 221100 000001112222222 22334 7788888887765433322 23334444442334
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHH
Q 004829 443 YLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLI 522 (728)
Q Consensus 443 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 522 (728)
+...|++++|+..|++++.. +...|..+.. .+|.+|..+|++++|+.+|++++..... ..........
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~-----~~~~P~~a~~--~la~~yl~~g~~e~A~~~l~~~l~~~p~-----~~~~~~~~~~ 314 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAE-----GQIIPPWAQR--WVASAYLKLHQPEKAQSILTELFYHPET-----IADLSDEELA 314 (765)
T ss_pred HHHhhhHHHHHHHHHHhhcc-----CCCCCHHHHH--HHHHHHHhcCCcHHHHHHHHHHhhcCCC-----CCCCChHHHH
Confidence 46789999999999998875 1112444443 3689999999999999999998864211 1011134566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcCC-------CC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004829 523 DIAAIYQSMNELEQAVKLLNKALKIYGKTP-------GQ-QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE 594 (728)
Q Consensus 523 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 594 (728)
.++.++...|++++|+.+++++....+... .. ......++..++.++...|++++|+..+++++..
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~------ 388 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN------ 388 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 777788999999999999999987754211 11 1123456678999999999999999999999887
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 595 KKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 595 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
.|....++..+|.++...|++++|+..+++++.+ .|+...+++.+|.++...|++++|+..++++++..
T Consensus 389 --~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--------~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 389 --APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--------EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 3334679999999999999999999999999999 88888899999999999999999999999999853
No 21
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.91 E-value=2.3e-22 Score=194.12 Aligned_cols=329 Identities=16% Similarity=0.163 Sum_probs=278.4
Q ss_pred HHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHH
Q 004829 272 LAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVG 351 (728)
Q Consensus 272 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 351 (728)
-|.-+++.|++...+.+|+.|++.- .+.......+|..||.+|+.+++|++|+++..--+.+.+.+ .+....+
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvG-----TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGEA 95 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVG-----TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGEA 95 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhc-----chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhccc
Confidence 4777899999999999999999764 44444455679999999999999999999988877776554 2233445
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCC--------------------HHH
Q 004829 352 ETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGD--------------------YEA 411 (728)
Q Consensus 352 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~--------------------~~~ 411 (728)
.+.-+||..+...|.|++|+.++.+-+.+.++.++ ....+.+++++|.+|...|+ ++.
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgD--rv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~ 173 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGD--RVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN 173 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHHHHHHhH--HHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence 67788999999999999999999999999998874 45667889999999998775 567
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCh
Q 004829 412 ALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKL 491 (728)
Q Consensus 412 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 491 (728)
|.++|..-+.+....++......++-+||..|+.+|+|+.|+.+.+.-|.+.++. ++....-.++.+||.+|..+|++
T Consensus 174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef--GDrAaeRRA~sNlgN~hiflg~f 251 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF--GDRAAERRAHSNLGNCHIFLGNF 251 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh--hhHHHHHHhhcccchhhhhhccc
Confidence 7888888888888888888889999999999999999999999999999998877 45666778999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH
Q 004829 492 RDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYM 571 (728)
Q Consensus 492 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 571 (728)
+.|+++|+..+.+..++. +....+...+.||..|.-..++++|+.|+++-+.|.+.. ++......+++.||..|..
T Consensus 252 e~A~ehYK~tl~LAielg---~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL-~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 252 ELAIEHYKLTLNLAIELG---NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL-EDRIGELRACWSLGNAFNA 327 (639)
T ss_pred HhHHHHHHHHHHHHHHhc---chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHh
Confidence 999999999999887765 345577888999999999999999999999999998877 6666667888999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCH
Q 004829 572 TGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTI 617 (728)
Q Consensus 572 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 617 (728)
.|..++|+.+.++.+++..+..+.... ..+..++...-...|..
T Consensus 328 lg~h~kAl~fae~hl~~s~ev~D~sge--lTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLRSSLEVNDTSGE--LTARDNLSDLILELGQE 371 (639)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCcchh--hhhhhhhHHHHHHhCCC
Confidence 999999999999999999888776533 23455566555555543
No 22
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.91 E-value=2e-22 Score=194.45 Aligned_cols=331 Identities=16% Similarity=0.186 Sum_probs=281.6
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHH
Q 004829 357 VAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASID 436 (728)
Q Consensus 357 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 436 (728)
-|.-+++.|++...+.+|+.|++.-.+.. .....+|..||..|+.+++|++|+++...-+.+.+..++....+...
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl----~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKss 98 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDL----STLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSS 98 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHH----HHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccc
Confidence 35567889999999999999998754432 34456799999999999999999999988888888888888888899
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC--------------------hHHHHH
Q 004829 437 CSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGK--------------------LRDSKS 496 (728)
Q Consensus 437 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~ 496 (728)
.+||.++...|.|++|+.++.+-|.+.++. ++......++++||.+|...|+ ++.|.+
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~areL--gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~ 176 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFAREL--GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK 176 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHHH--hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence 999999999999999999999999998887 4566778999999999998875 456777
Q ss_pred HHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHH
Q 004829 497 YCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYS 576 (728)
Q Consensus 497 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 576 (728)
+|..-+++.++.. +......++.+||..|+.+|+|++|+..-+.-+.+.++. |+....-.++.++|.+|.-.|+++
T Consensus 177 fy~eNL~l~~~lg---Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef-GDrAaeRRA~sNlgN~hiflg~fe 252 (639)
T KOG1130|consen 177 FYMENLELSEKLG---DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF-GDRAAERRAHSNLGNCHIFLGNFE 252 (639)
T ss_pred HHHHHHHHHHHhh---hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh-hhHHHHHHhhcccchhhhhhcccH
Confidence 8888788777654 344567889999999999999999999999999998887 777777788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004829 577 DSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM 656 (728)
Q Consensus 577 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~ 656 (728)
.|+++|+.++.+..++++.. ..+...+.||..|.-..++++|+.|+++-+.|.+.... ......+++.||..|...
T Consensus 253 ~A~ehYK~tl~LAielg~r~--vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D--riGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 253 LAIEHYKLTLNLAIELGNRT--VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED--RIGELRACWSLGNAFNAL 328 (639)
T ss_pred hHHHHHHHHHHHHHHhcchh--HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhh
Confidence 99999999999999988763 35788899999999999999999999999999887643 334567899999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhH
Q 004829 657 GRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRN 703 (728)
Q Consensus 657 g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~ 703 (728)
|..++|+.+.++.+++..++-.+ .....+..+|..+....|..+.
T Consensus 329 g~h~kAl~fae~hl~~s~ev~D~--sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 329 GEHRKALYFAELHLRSSLEVNDT--SGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCc--chhhhhhhhhHHHHHHhCCCcc
Confidence 99999999999999988777332 2245667778888787777554
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=1.3e-19 Score=202.98 Aligned_cols=443 Identities=12% Similarity=-0.014 Sum_probs=328.9
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHH
Q 004829 211 PLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLE 290 (728)
Q Consensus 211 ~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 290 (728)
+.....-.|..+...+..+...++.| ++..|+..++++++.. |........+..++...|++++|+.+++
T Consensus 23 ~~~~~~~~p~~~~~~y~~aii~~r~G-d~~~Al~~L~qaL~~~---------P~~~~av~dll~l~~~~G~~~~A~~~~e 92 (822)
T PRK14574 23 FISGFVVNPAMADTQYDSLIIRARAG-DTAPVLDYLQEESKAG---------PLQSGQVDDWLQIAGWAGRDQEVIDVYE 92 (822)
T ss_pred HHcccccCccchhHHHHHHHHHHhCC-CHHHHHHHHHHHHhhC---------ccchhhHHHHHHHHHHcCCcHHHHHHHH
Confidence 33345567778889999999999998 9999999999999862 2222112267788888899999999999
Q ss_pred HhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHH
Q 004829 291 RSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEA 370 (728)
Q Consensus 291 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 370 (728)
+++.-. +.. ...+..+|.+|...|++++|+..|+++++. +|....++..++.+|...++.++|
T Consensus 93 ka~~p~-----n~~----~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eA 155 (822)
T PRK14574 93 RYQSSM-----NIS----SRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVV 155 (822)
T ss_pred HhccCC-----CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHH
Confidence 998311 111 123566688999999999999999999998 777788888999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHH
Q 004829 371 EKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFD 450 (728)
Q Consensus 371 ~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 450 (728)
+..++++....+... .+..++.++...++..+|+..|++++.. .|....++..+..++...|-..
T Consensus 156 l~~l~~l~~~dp~~~---------~~l~layL~~~~~~~~~AL~~~ekll~~------~P~n~e~~~~~~~~l~~~~~~~ 220 (822)
T PRK14574 156 LKQATELAERDPTVQ---------NYMTLSYLNRATDRNYDALQASSEAVRL------APTSEEVLKNHLEILQRNRIVE 220 (822)
T ss_pred HHHHHHhcccCcchH---------HHHHHHHHHHhcchHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcH
Confidence 999999987765421 1334455555577777799999988765 3333444444444444444333
Q ss_pred HHHH-----------------------------------------HHHHHHHHHHHhcC------CCCHHHHHHHHHHHH
Q 004829 451 EAIF-----------------------------------------SYHKALTAFKSAKG------ENHPAVASVFVRLAD 483 (728)
Q Consensus 451 ~A~~-----------------------------------------~~~~al~~~~~~~~------~~~~~~~~~~~~la~ 483 (728)
.|.+ ..++++..+...+. +.++....+....-.
T Consensus 221 ~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~ 300 (822)
T PRK14574 221 PALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLG 300 (822)
T ss_pred HHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 3332 23334444443332 223344556667777
Q ss_pred HHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 004829 484 LYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEA 563 (728)
Q Consensus 484 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 563 (728)
++...|++.+++..|+........ .|. .+...+|..|...+++++|+.+|+.++.-.+..... +.......
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~------~P~--y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~-~~~~~~~~ 371 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYK------MPD--YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRN-SDDLLDAD 371 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCC------CCH--HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCC-CcchHHHH
Confidence 788899999999999876544212 232 356778999999999999999999987654322111 11122235
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH----h---CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004829 564 QMGVMYYMTGNYSDSYNTLKSAISKFRT----S---GEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG 636 (728)
Q Consensus 564 ~la~~~~~~g~~~~A~~~~~~al~~~~~----~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 636 (728)
.|...|...++|++|..++++..+...- . ....++....+...++.++...|++.+|++.+++.+..
T Consensus 372 ~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~------ 445 (822)
T PRK14574 372 DLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST------ 445 (822)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 6788899999999999999998873220 0 11234456688888999999999999999999999888
Q ss_pred CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhc
Q 004829 637 PYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSN 716 (728)
Q Consensus 637 ~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~ 716 (728)
.|....++..+|.++...|.+.+|...++.+.. .+|+...+...++.++..+|++++|. ..+..++...
T Consensus 446 --aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--------l~P~~~~~~~~~~~~al~l~e~~~A~-~~~~~l~~~~ 514 (822)
T PRK14574 446 --APANQNLRIALASIYLARDLPRKAEQELKAVES--------LAPRSLILERAQAETAMALQEWHQME-LLTDDVISRS 514 (822)
T ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--------hCCccHHHHHHHHHHHHhhhhHHHHH-HHHHHHHhhC
Confidence 788888999999999999999999999988776 36888999999999999999999999 8889998888
Q ss_pred ccccc
Q 004829 717 SQNLK 721 (728)
Q Consensus 717 ~~~~~ 721 (728)
|+...
T Consensus 515 Pe~~~ 519 (822)
T PRK14574 515 PEDIP 519 (822)
T ss_pred CCchh
Confidence 87653
No 24
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.3e-22 Score=208.79 Aligned_cols=310 Identities=15% Similarity=0.093 Sum_probs=248.3
Q ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 004829 352 ETCRYVAEAHVQSL--QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHE 429 (728)
Q Consensus 352 ~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 429 (728)
..+..+|..|...- +..+|+..|++.-... .....++..+|..|+.+++|++|..+|+.+-++ .
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~--------~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~------~ 383 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHH--------YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI------E 383 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhc--------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------c
Confidence 34455555554433 4567888887722221 112357889999999999999999999987654 2
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC
Q 004829 430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN 509 (728)
Q Consensus 430 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 509 (728)
|....-.-....+++.+.+--+---+.+..++. .|..+.+|..+|.+|..+++++.|+++|++|+++
T Consensus 384 p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~--------~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl----- 450 (638)
T KOG1126|consen 384 PYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDT--------DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL----- 450 (638)
T ss_pred cccccchhHHHHHHHHHHhhHHHHHHHHHHHhh--------CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-----
Confidence 222222222233333333322222222333333 7788889999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 510 HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKF 589 (728)
Q Consensus 510 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 589 (728)
+|..+.+|..+|.-+....+++.|..+|+.|+.+.++. ..+|+.+|.+|.++++++.|.-+|++|+++
T Consensus 451 ----dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh-------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I- 518 (638)
T KOG1126|consen 451 ----DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH-------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEI- 518 (638)
T ss_pred ----CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh-------hHHHHhhhhheeccchhhHHHHHHHhhhcC-
Confidence 56678899999999999999999999999999877666 578999999999999999999999999998
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829 590 RTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYV 669 (728)
Q Consensus 590 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a 669 (728)
.|....++..+|.++.+.|+.++|+.+|++|+.+ +|...-..+..|.++..++++++|+..+++.
T Consensus 519 -------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 519 -------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred -------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 5666788999999999999999999999999999 7777778999999999999999999999999
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccccCCc
Q 004829 670 VGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLKEDAI 725 (728)
Q Consensus 670 l~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~~~~i 725 (728)
.++. |+...+++.+|.+|.+.|+.+.|+ .-+-.+.+.+|...+ ..|
T Consensus 584 k~~v--------P~es~v~~llgki~k~~~~~~~Al-~~f~~A~~ldpkg~~-i~~ 629 (638)
T KOG1126|consen 584 KELV--------PQESSVFALLGKIYKRLGNTDLAL-LHFSWALDLDPKGAQ-IQI 629 (638)
T ss_pred HHhC--------cchHHHHHHHHHHHHHHccchHHH-HhhHHHhcCCCccch-hhH
Confidence 8865 899999999999999999999999 888899999998766 443
No 25
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.90 E-value=1.5e-21 Score=190.46 Aligned_cols=407 Identities=16% Similarity=0.170 Sum_probs=313.6
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhh
Q 004829 218 NPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV 297 (728)
Q Consensus 218 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 297 (728)
-|+.+.+-...|+.++... +|.+|+.+|+-|+...+.+. ..-....+.++|..+.+.|+|+.|+..|+..++..
T Consensus 233 f~nag~lkmnigni~~kkr-~fskaikfyrmaldqvpsin----k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~- 306 (840)
T KOG2003|consen 233 FPNAGILKMNIGNIHFKKR-EFSKAIKFYRMALDQVPSIN----KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA- 306 (840)
T ss_pred cCCCceeeeeecceeeehh-hHHHHHHHHHHHHhhccccc----hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC-
Confidence 3555666677889999884 89999999999998755432 12346678899999999999999999999988754
Q ss_pred hhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHc------CCCChH----------------------
Q 004829 298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVL------GETDHR---------------------- 349 (728)
Q Consensus 298 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~---------------------- 349 (728)
+ .+.+-++|..|++..|+-++-.+.|.+.+.+-...- ..++|.
T Consensus 307 ----p-----n~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka 377 (840)
T KOG2003|consen 307 ----P-----NFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKA 377 (840)
T ss_pred ----c-----cHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhh
Confidence 1 223456777788888887777777777654311000 000000
Q ss_pred ----------------------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCc
Q 004829 350 ----------------------------------------VGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPAS 389 (728)
Q Consensus 350 ----------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 389 (728)
....-.+.+-.|.+.|+++.|++.+.-.- ... .
T Consensus 378 ~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~----~kd---n 450 (840)
T KOG2003|consen 378 DAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE----KKD---N 450 (840)
T ss_pred hHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH----hcc---c
Confidence 01111233445677888888877654322 221 1
Q ss_pred HHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004829 390 IEEAADRRLMGLICDSKG--DYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK 467 (728)
Q Consensus 390 ~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 467 (728)
.....+-++|..+++.+| ++.+|..+-..++.+ +...+.++.+.|.+.+..|++++|.+.|+++|.-
T Consensus 451 k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n----- 519 (840)
T KOG2003|consen 451 KTASAAANNLCALRFLQGGKDFADAQQYADIALNI------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN----- 519 (840)
T ss_pred hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC-----
Confidence 112234556666666644 688888888888754 4555778889999999999999999999999885
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 468 GENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547 (728)
Q Consensus 468 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 547 (728)
+.....+++++|..+..+|++++|+.+|-+.-.+... .+.++..++.+|..+.+..+|+++|.++..+
T Consensus 520 ---dasc~ealfniglt~e~~~~ldeald~f~klh~il~n---------n~evl~qianiye~led~aqaie~~~q~~sl 587 (840)
T KOG2003|consen 520 ---DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN---------NAEVLVQIANIYELLEDPAQAIELLMQANSL 587 (840)
T ss_pred ---chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc
Confidence 7778899999999999999999999999998888543 6789999999999999999999999999887
Q ss_pred HhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829 548 YGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEA 627 (728)
Q Consensus 548 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 627 (728)
.+.. ..++..||.+|-+.|+-.+|.+++-.....+ +.......+||..|....-+++|+.+|+++
T Consensus 588 ip~d-------p~ilskl~dlydqegdksqafq~~ydsyryf--------p~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 588 IPND-------PAILSKLADLYDQEGDKSQAFQCHYDSYRYF--------PCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred CCCC-------HHHHHHHHHHhhcccchhhhhhhhhhccccc--------CcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7665 4678899999999999999999988776653 334567788999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCC
Q 004829 628 RTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR 700 (728)
Q Consensus 628 l~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 700 (728)
.-+ .|........++.|+.+.|+|.+|.+.|+....- .|...+++.-|..+...+|-
T Consensus 653 ali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--------fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 653 ALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--------FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred Hhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CccchHHHHHHHHHhccccc
Confidence 888 8888888899999999999999999999987763 48888888888888777774
No 26
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.3e-20 Score=185.77 Aligned_cols=392 Identities=20% Similarity=0.250 Sum_probs=264.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC
Q 004829 223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ 302 (728)
Q Consensus 223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 302 (728)
.-+...|+..+..| +|+.|+.+|..|+.+- |.....|.+...+|..+|+|++|+..-.+.+++. +
T Consensus 3 ~e~k~kgnaa~s~~-d~~~ai~~~t~ai~l~---------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-----p 67 (539)
T KOG0548|consen 3 VELKEKGNAAFSSG-DFETAIRLFTEAIMLS---------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-----P 67 (539)
T ss_pred hHHHHHHHhhcccc-cHHHHHHHHHHHHccC---------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-----C
Confidence 44677899999997 9999999999999862 3356678999999999999999999999999886 4
Q ss_pred chhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC-----------------
Q 004829 303 DHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSL----------------- 365 (728)
Q Consensus 303 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----------------- 365 (728)
+.+ ..|..+|..+.-+|+|++|+..|.+.|+. +|.....+..|+.++...-
T Consensus 68 ~w~----kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--------d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~ 135 (539)
T KOG0548|consen 68 DWA----KGYSRKGAALFGLGDYEEAILAYSEGLEK--------DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLAN 135 (539)
T ss_pred chh----hHHHHhHHHHHhcccHHHHHHHHHHHhhc--------CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhc
Confidence 433 45999999999999999999999999998 7777777777777662220
Q ss_pred ----CHHHHHHHHHHHHHHHHHcC---------------------------------------CC------------Cc-
Q 004829 366 ----QFDEAEKICQMALDIHRENT---------------------------------------SP------------AS- 389 (728)
Q Consensus 366 ----~~~~A~~~~~~al~~~~~~~---------------------------------------~~------------~~- 389 (728)
++-.....|...+...+..+ .+ +.
T Consensus 136 ~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ 215 (539)
T KOG0548|consen 136 LPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNT 215 (539)
T ss_pred ChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhH
Confidence 01111112222222221110 00 00
Q ss_pred -----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829 390 -----IEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFK 464 (728)
Q Consensus 390 -----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 464 (728)
...+.-...+|...+...++..|+++|..++.+. .....+.+.+.+|+..|.+.+++..+.++++...
T Consensus 216 ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr 288 (539)
T KOG0548|consen 216 EERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR 288 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH
Confidence 0124456778999999999999999999998773 4456678888999999999999988888877644
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829 465 SAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKA 544 (728)
Q Consensus 465 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 544 (728)
.... +...++.++..+|..|...++++.|+.+|++++...+. ..+.......++++......
T Consensus 289 e~ra-d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----------------~~~ls~lk~~Ek~~k~~e~~ 350 (539)
T KOG0548|consen 289 ELRA-DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----------------PDLLSKLKEAEKALKEAERK 350 (539)
T ss_pred HHHH-HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----------------HHHHHHHHHHHHHHHHHHHH
Confidence 3210 12235566677888999999999999999998876443 12222333333443333332
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829 545 LKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLF 624 (728)
Q Consensus 545 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 624 (728)
.-+.+. .+.-...-|..++..|+|..|+..|.+|+.. .|..+..|.+.|.||..+|.+..|+...
T Consensus 351 a~~~pe-------~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da 415 (539)
T KOG0548|consen 351 AYINPE-------KAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDA 415 (539)
T ss_pred HhhChh-------HHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 222111 1233334466666667777777777666654 3444566666677777777777777766
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 004829 625 EEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE 697 (728)
Q Consensus 625 ~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~ 697 (728)
+.++++ +|....+|..-|.++..+.+|++|++.|+++++ .+|...++...+..++..
T Consensus 416 ~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAleay~eale--------~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 416 KKCIEL--------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--------LDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCchhHHHHHHHHHHHHH
Confidence 666666 666666666666677666777777766666666 235555555555555554
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2.9e-20 Score=198.57 Aligned_cols=308 Identities=16% Similarity=0.129 Sum_probs=245.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChh
Q 004829 352 ETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELD 431 (728)
Q Consensus 352 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 431 (728)
...+.+|..+...|++++|+..|++++...+.. ..++..+|.++...|++++|+..+++++... ......
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~ 105 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPET--------VELHLALGNLFRRRGEVDRAIRIHQNLLSRP--DLTREQ 105 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCccc--------HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC--CCCHHH
Confidence 445667888899999999999999999875432 3468899999999999999999999876421 011123
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC
Q 004829 432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG 511 (728)
Q Consensus 432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 511 (728)
...++..+|.+|...|++++|+.+|.++++. .+....++..++.++...|++++|+..+++++......
T Consensus 106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--- 174 (389)
T PRK11788 106 RLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS--- 174 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc---
Confidence 3467899999999999999999999999876 66677889999999999999999999999988764221
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT 591 (728)
Q Consensus 512 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 591 (728)
........+..+|.++...|++++|+.+|+++++..+.. ..++..+|.++...|++++|+.++++++...
T Consensus 175 -~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-- 244 (389)
T PRK11788 175 -LRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC-------VRASILLGDLALAQGDYAAAIEALERVEEQD-- 244 (389)
T ss_pred -chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--
Confidence 122345567889999999999999999999999875443 4567889999999999999999999998761
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 592 SGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG 671 (728)
Q Consensus 592 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 671 (728)
+.....++..++.+|...|++++|+..+++++.. +|+.. .+..++.++...|++++|+.+++++++
T Consensus 245 -----p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 245 -----PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--------YPGAD-LLLALAQLLEEQEGPEAAQALLREQLR 310 (389)
T ss_pred -----hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2223467788999999999999999999999887 55543 348899999999999999999999998
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHHH--hCChhHHHHHHHHHHH
Q 004829 672 MREEKLGTANPDVEDEKRRLAELLKE--AGRVRNRKSRSLVTFL 713 (728)
Q Consensus 672 ~~~~~~~~~~p~~~~~~~~La~~~~~--~g~~~~A~~~~l~~ll 713 (728)
. +|+.......++..+.. .|+.++|+ ..++.++
T Consensus 311 ~--------~P~~~~~~~l~~~~~~~~~~g~~~~a~-~~~~~~~ 345 (389)
T PRK11788 311 R--------HPSLRGFHRLLDYHLAEAEEGRAKESL-LLLRDLV 345 (389)
T ss_pred h--------CcCHHHHHHHHHHhhhccCCccchhHH-HHHHHHH
Confidence 4 46666544344433322 45888888 5555544
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=1.1e-20 Score=216.08 Aligned_cols=378 Identities=13% Similarity=0.024 Sum_probs=294.0
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHH
Q 004829 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGD 317 (728)
Q Consensus 238 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~ 317 (728)
.+.+|...+....+. .|.....+..++......|++++|..+|+++....... .- .......++.
T Consensus 357 ~~~~~~~~~~~~y~~---------~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~----~~~l~~~l~~ 421 (987)
T PRK09782 357 NKAEALRLARLLYQQ---------EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDA--RL----SQTLMARLAS 421 (987)
T ss_pred chhHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccc--cc----CHHHHHHHHH
Confidence 677777776664432 13345668889999999999999999999999752111 11 1112447777
Q ss_pred HHHHhCC---HHHHHHH----------------------HHHHHHHHHHHcCCCChH--HHHHHHHHHHHHHHhCCHHHH
Q 004829 318 TYAMLGQ---IENSILC----------------------YTAGLEIQRQVLGETDHR--VGETCRYVAEAHVQSLQFDEA 370 (728)
Q Consensus 318 ~~~~~g~---~~~A~~~----------------------~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A 370 (728)
+|...+. ..+++.+ +..+... ++ ..|. ...++..+|.++.. +++.+|
T Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----l~-~~p~~~~~~a~~~LG~~l~~-~~~~eA 495 (987)
T PRK09782 422 LLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRL----LG-DMSPSYDAAAWNRLAKCYRD-TLPGVA 495 (987)
T ss_pred HHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHh----cc-cCCCCCCHHHHHHHHHHHHh-CCcHHH
Confidence 7777655 3333222 2222222 22 2455 78899999999987 899999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHH
Q 004829 371 EKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFD 450 (728)
Q Consensus 371 ~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 450 (728)
+..+.+++...|.. .....+|.++...|++++|+..|+++... .+. ...+..+|.++...|+++
T Consensus 496 i~a~~~Al~~~Pd~---------~~~L~lA~al~~~Gr~eeAi~~~rka~~~------~p~-~~a~~~la~all~~Gd~~ 559 (987)
T PRK09782 496 LYAWLQAEQRQPDA---------WQHRAVAYQAYQVEDYATALAAWQKISLH------DMS-NEDLLAAANTAQAAGNGA 559 (987)
T ss_pred HHHHHHHHHhCCch---------HHHHHHHHHHHHCCCHHHHHHHHHHHhcc------CCC-cHHHHHHHHHHHHCCCHH
Confidence 99999998776531 13556777888999999999999986432 122 234678899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH
Q 004829 451 EAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS 530 (728)
Q Consensus 451 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 530 (728)
+|+.+|++++.. .|.....+..++..+...|++++|+..|++++++ .|. ...+.++|.++..
T Consensus 560 eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---------~P~-~~a~~~LA~~l~~ 621 (987)
T PRK09782 560 ARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---------APS-ANAYVARATIYRQ 621 (987)
T ss_pred HHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---------CCC-HHHHHHHHHHHHH
Confidence 999999999987 5655666666777777789999999999999988 233 6788999999999
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 004829 531 MNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLA 610 (728)
Q Consensus 531 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 610 (728)
.|++++|+..|++++.+.+.. ..++.++|.++...|++++|+..|++++++ .|....++.++|.+
T Consensus 622 lG~~deA~~~l~~AL~l~Pd~-------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~a 686 (987)
T PRK09782 622 RHNVPAAVSDLRAALELEPNN-------SNYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYV 686 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 999999999999999987665 568899999999999999999999999987 44456899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 004829 611 CVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRR 690 (728)
Q Consensus 611 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~ 690 (728)
+...|++++|+.+|++++++ .|+...+....|.+.....+++.|.+.+.++..+. |... +...
T Consensus 687 l~~lGd~~eA~~~l~~Al~l--------~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~--------~~~~-a~~~ 749 (987)
T PRK09782 687 NQRLDDMAATQHYARLVIDD--------IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS--------FDSS-IGLR 749 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhc--------CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC--------ccch-hccc
Confidence 99999999999999999999 88888899999999999999999999998887742 4433 6666
Q ss_pred HHHHHHHhCChh
Q 004829 691 LAELLKEAGRVR 702 (728)
Q Consensus 691 La~~~~~~g~~~ 702 (728)
.+.++...+++-
T Consensus 750 ~g~~~~~~~~~~ 761 (987)
T PRK09782 750 SGAMSTANNNVG 761 (987)
T ss_pred cchHhhhccccc
Confidence 777777766653
No 29
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=3.5e-20 Score=198.02 Aligned_cols=308 Identities=14% Similarity=0.101 Sum_probs=248.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcH
Q 004829 311 GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASI 390 (728)
Q Consensus 311 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 390 (728)
..+.+|..+...|++++|+..|++++.. +|....++..+|.++...|++++|+..+++++.. ......
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~~~~~~ 104 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR----PDLTRE 104 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC----CCCCHH
Confidence 3677789999999999999999999988 6778889999999999999999999999988762 111222
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829 391 EEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGEN 470 (728)
Q Consensus 391 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 470 (728)
....++..+|.+|...|++++|+..|.+++.. .+....++..++.++...|++++|+..+++++..... ..
T Consensus 105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~ 175 (389)
T PRK11788 105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDE------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---SL 175 (389)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---cc
Confidence 33457889999999999999999999998743 4555678899999999999999999999998875211 01
Q ss_pred CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
.......+..+|.++...|++++|+.+|+++++.. +....++..+|.++...|++++|+.+|++++...+.
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAAD---------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC---------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 12244567789999999999999999999999873 334567889999999999999999999999876432
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
....++..++.+|...|++++|+..+++++... ++. ..+..++.++...|++++|+..|+++++.
T Consensus 247 ------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~----~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 247 ------YLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-----PGA----DLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred ------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc----hHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 224566789999999999999999999998761 111 23478999999999999999999999998
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHHHHHH
Q 004829 631 LEKEYGPYHHDTLGVYSNLAGTYDA--MGRIDDAIEILEYVVG 671 (728)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~La~~~~~--~g~~~~A~~~~~~al~ 671 (728)
.|+.......++..+.. .|+..+|+..+++.++
T Consensus 312 --------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 312 --------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred --------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 77766444344433322 5689999999998886
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=9.2e-22 Score=202.60 Aligned_cols=301 Identities=16% Similarity=0.170 Sum_probs=246.7
Q ss_pred HHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 004829 310 AGCMQLGDTYAML--GQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP 387 (728)
Q Consensus 310 ~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 387 (728)
..+..+|..|... -+..+|+..|++.-.. ++....++..+|.+|+.+++|++|..+|+.+-++.|-....
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h--------~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~ 389 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSH--------HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKG 389 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh--------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 3456666666544 4567888888883333 67777899999999999999999999999998776644332
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004829 388 ASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK 467 (728)
Q Consensus 388 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 467 (728)
-. ....+++.+.+ +-++.++.+ .+. ..++.....|+.+|.||..+++++.|+++|++|+++
T Consensus 390 me--------iyST~LWHLq~-~v~Ls~Laq--~Li---~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl----- 450 (638)
T KOG1126|consen 390 ME--------IYSTTLWHLQD-EVALSYLAQ--DLI---DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL----- 450 (638)
T ss_pred hh--------HHHHHHHHHHh-hHHHHHHHH--HHH---hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-----
Confidence 11 11222222211 122223222 122 335666789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 468 GENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547 (728)
Q Consensus 468 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 547 (728)
+|..+.+|..+|.=+....+++.|..+|+.|+.+ .+....+|+.+|.+|.++++++.|+-+|++|+++
T Consensus 451 ---dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~---------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I 518 (638)
T KOG1126|consen 451 ---DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV---------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI 518 (638)
T ss_pred ---CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC---------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC
Confidence 9999999999999999999999999999999988 5667889999999999999999999999999998
Q ss_pred HhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829 548 YGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEA 627 (728)
Q Consensus 548 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 627 (728)
.+.. ..+...+|.++.+.|+.++|+.+|++|+.+ ++......+..|.+++..+++++|+..+++.
T Consensus 519 NP~n-------svi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 519 NPSN-------SVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred Cccc-------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 7765 456678999999999999999999999987 3444567889999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 628 RTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM 672 (728)
Q Consensus 628 l~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~ 672 (728)
.++ .|+...+++.+|.+|.++|+.+.|+..|--|..+
T Consensus 584 k~~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 584 KEL--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHh--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 988 8999999999999999999999999999988875
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.8e-19 Score=175.91 Aligned_cols=306 Identities=17% Similarity=0.156 Sum_probs=242.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829 312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE 391 (728)
Q Consensus 312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 391 (728)
-+.++.+|....+.++++.-++...... -|.....-...|.+.+...++++|+..|+..++..| ..+.
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~g-------f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDP-----YRl~ 297 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVG-------FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDP-----YRLD 297 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-----Ccch
Confidence 4556777777778888877777665551 345555666778889999999999999998876433 2222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829 392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH 471 (728)
Q Consensus 392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 471 (728)
.... ...+++-..+-. .+.++.+ ..... +.....+.+.+|..|...++.++|+.+|++|+++ +
T Consensus 298 dmdl---ySN~LYv~~~~s-kLs~LA~--~v~~i---dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------N 360 (559)
T KOG1155|consen 298 DMDL---YSNVLYVKNDKS-KLSYLAQ--NVSNI---DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--------N 360 (559)
T ss_pred hHHH---HhHHHHHHhhhH-HHHHHHH--HHHHh---ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--------C
Confidence 2222 333333333211 1222211 11111 2333456778899999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829 472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 472 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 551 (728)
|....++..+|.-|..+.+...|+..|++|+++ .|....+|+.||+.|..++.+.=|+-+|++|+++.+..
T Consensus 361 p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi---------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD 431 (559)
T KOG1155|consen 361 PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI---------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND 431 (559)
T ss_pred cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc---------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999 45677999999999999999999999999999886655
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 552 PGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTIL 631 (728)
Q Consensus 552 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 631 (728)
..++..||.+|.++++.++|+++|.+++.. ......++..||.+|.+.++.++|..+|++.++..
T Consensus 432 -------sRlw~aLG~CY~kl~~~~eAiKCykrai~~--------~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 432 -------SRLWVALGECYEKLNRLEEAIKCYKRAILL--------GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred -------hHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999987 33346799999999999999999999999999976
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 632 EKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG 671 (728)
Q Consensus 632 ~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 671 (728)
..-|...+....+...||..+.+.+++++|..+..+++.
T Consensus 497 -~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 497 -ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred -HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 334555777888888899999999999999999988876
No 32
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2e-19 Score=176.96 Aligned_cols=373 Identities=12% Similarity=0.064 Sum_probs=266.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829 266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE 345 (728)
Q Consensus 266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 345 (728)
...++..|.++...|....|+..|..++... | ....+|..|+.+... ++.......- ..
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-----P----~~W~AWleL~~lit~-------~e~~~~l~~~-----l~ 222 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-----P----WFWSAWLELSELITD-------IEILSILVVG-----LP 222 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-----C----cchHHHHHHHHhhch-------HHHHHHHHhc-----Cc
Confidence 3445566777777777777777666665432 1 112234444443221 1111111100 00
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829 346 TDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDI-HRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMA 424 (728)
Q Consensus 346 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 424 (728)
.......-..++.++....+.++++.-++....+ ++.. ...-...|.+...+.++++|+..|+.....
T Consensus 223 -~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~--------~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-- 291 (559)
T KOG1155|consen 223 -SDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNS--------MYIKTQIAAASYNQRDFDQAESVFEEIRKN-- 291 (559)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc--------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--
Confidence 0122333445566666666777776666655544 2111 123456788888899999999999876532
Q ss_pred hcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 425 ANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI 504 (728)
Q Consensus 425 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (728)
+|....-......+++-..+-.+---+.+.+..+ +.....+...+|+.|...++.++|+.+|++|+++
T Consensus 292 ----DPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i--------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL 359 (559)
T KOG1155|consen 292 ----DPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI--------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL 359 (559)
T ss_pred ----CCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh--------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc
Confidence 3333333333344444444433333333444444 4455666778899999999999999999999999
Q ss_pred HcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829 505 YGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKS 584 (728)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 584 (728)
+|....+|..+|.-|..+.+...|+..|++|+++.+.. .++|+.||++|..++...=|+-+|++
T Consensus 360 ---------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D-------yRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 360 ---------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD-------YRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred ---------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh-------HHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 56678899999999999999999999999999998766 57899999999999999999999999
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004829 585 AISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE 664 (728)
Q Consensus 585 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 664 (728)
|+.. .|.....|..||.||.+.++.++|+.+|.+|+.. ......++..||.+|..+++..+|..
T Consensus 424 A~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--------~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 424 ALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--------GDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHHHHhHHHHHH
Confidence 9987 3445689999999999999999999999999987 33345689999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhc
Q 004829 665 ILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSN 716 (728)
Q Consensus 665 ~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~ 716 (728)
+|++.++.. ..-|...|.+..+..-||.-+.+.+++++|. .+...++...
T Consensus 488 ~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As-~Ya~~~~~~~ 537 (559)
T KOG1155|consen 488 YYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEAS-YYATLVLKGE 537 (559)
T ss_pred HHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHH-HHHHHHhcCC
Confidence 999999976 4556777888899999999999999999999 7666665543
No 33
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.4e-19 Score=180.92 Aligned_cols=438 Identities=14% Similarity=0.128 Sum_probs=305.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCch
Q 004829 225 LLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDH 304 (728)
Q Consensus 225 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 304 (728)
+..+.+.+..+. .|.-|+-+.+++..+ + .+|.. .+.+|++++-.|+|..|......-. +.
T Consensus 19 ~~~~~r~~l~q~-~y~~a~f~adkV~~l------~-~dp~d---~~~~aq~l~~~~~y~ra~~lit~~~-le-------- 78 (611)
T KOG1173|consen 19 YRRLVRDALMQH-RYKTALFWADKVAGL------T-NDPAD---IYWLAQVLYLGRQYERAAHLITTYK-LE-------- 78 (611)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHhc------c-CChHH---HHHHHHHHHhhhHHHHHHHHHHHhh-hh--------
Confidence 334444555553 789999998888765 2 34443 4568999999999999988776531 11
Q ss_pred hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHc----------------CCCCh--HHHHHHHHHHHHHHHhCC
Q 004829 305 ALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVL----------------GETDH--RVGETCRYVAEAHVQSLQ 366 (728)
Q Consensus 305 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------------~~~~~--~~~~~~~~la~~~~~~g~ 366 (728)
...+.+.+..+.++....++++|..++..+ .+....+ +.+.+ .....++..|.+|....+
T Consensus 79 -~~d~~cryL~~~~l~~lk~~~~al~vl~~~-~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n 156 (611)
T KOG1173|consen 79 -KRDIACRYLAAKCLVKLKEWDQALLVLGRG-HVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDN 156 (611)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHhccc-chhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhcc
Confidence 223456888899999999999999888744 1111000 00001 123356677888999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-HHHH---------HcCCHHHHHHHHHHHHHHH-------HhcC--
Q 004829 367 FDEAEKICQMALDIHRENTSPASIEEAADRRLMG-LICD---------SKGDYEAALEHYVLASMSM-------AANG-- 427 (728)
Q Consensus 367 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg-~~~~---------~~g~~~~A~~~~~~al~~~-------~~~~-- 427 (728)
+++|...|.+|+.........-..... .+...+ ..+. ..+...+-++.+-++.... ...+
T Consensus 157 ~~~ar~~Y~~Al~~D~~c~Ea~~~lvs-~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~ 235 (611)
T KOG1173|consen 157 REEARDKYKEALLADAKCFEAFEKLVS-AHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDE 235 (611)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHH-HHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchh
Confidence 999999999998654333211000000 000000 0000 0111111111111110000 0000
Q ss_pred ---CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--------------------------hcCCCCHHHHHHH
Q 004829 428 ---HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKS--------------------------AKGENHPAVASVF 478 (728)
Q Consensus 428 ---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------------------------~~~~~~~~~~~~~ 478 (728)
.......+....+..++..++|.+..+.+...++...- .+-...|..+..|
T Consensus 236 sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW 315 (611)
T KOG1173|consen 236 SLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSW 315 (611)
T ss_pred hhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcch
Confidence 01123455666667777777777777766665553210 0012367777889
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcH
Q 004829 479 VRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTI 558 (728)
Q Consensus 479 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 558 (728)
+.+|..|...|++.+|..+|.++-.+ ++..+.+|...|..|...|+.++|+..|..|-++.+...
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~l---------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h------ 380 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTL---------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH------ 380 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhc---------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc------
Confidence 99999999999999999999999988 455788999999999999999999999999999987652
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829 559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY 638 (728)
Q Consensus 559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 638 (728)
.-...+|.-|...++++.|..+|.+|+.+ .|..+.++..+|.+.+..+.|.+|..+|+.++...+.....
T Consensus 381 -lP~LYlgmey~~t~n~kLAe~Ff~~A~ai--------~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e- 450 (611)
T KOG1173|consen 381 -LPSLYLGMEYMRTNNLKLAEKFFKQALAI--------APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE- 450 (611)
T ss_pred -chHHHHHHHHHHhccHHHHHHHHHHHHhc--------CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc-
Confidence 12346899999999999999999999998 33345789999999999999999999999999766665433
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829 639 HHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ 718 (728)
Q Consensus 639 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~ 718 (728)
.+.....+.+||.+|.+++.+++|+.+|++++.+. |..+.++..+|.+|..+|+++.|+ ..+.+.+-..|.
T Consensus 451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~--------~k~~~~~asig~iy~llgnld~Ai-d~fhKaL~l~p~ 521 (611)
T KOG1173|consen 451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS--------PKDASTHASIGYIYHLLGNLDKAI-DHFHKALALKPD 521 (611)
T ss_pred ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC--------CCchhHHHHHHHHHHHhcChHHHH-HHHHHHHhcCCc
Confidence 23455678999999999999999999999999854 888899999999999999999999 999988888887
Q ss_pred c
Q 004829 719 N 719 (728)
Q Consensus 719 ~ 719 (728)
+
T Consensus 522 n 522 (611)
T KOG1173|consen 522 N 522 (611)
T ss_pred c
Confidence 6
No 34
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.3e-19 Score=179.07 Aligned_cols=384 Identities=17% Similarity=0.209 Sum_probs=279.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhh------hh
Q 004829 224 FLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI------PV 297 (728)
Q Consensus 224 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~ 297 (728)
-.+.+|++++..| +|+.|......-. + ......+.+..+.++..+.+|++|..++.++-.. ..
T Consensus 51 d~~~~aq~l~~~~-~y~ra~~lit~~~-l---------e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~ 119 (611)
T KOG1173|consen 51 DIYWLAQVLYLGR-QYERAAHLITTYK-L---------EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYE 119 (611)
T ss_pred HHHHHHHHHHhhh-HHHHHHHHHHHhh-h---------hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcc
Confidence 3456788888876 7877766655431 1 1223567888999999999999999988843110 00
Q ss_pred hh---------cCCch-hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHH--------------
Q 004829 298 LE---------DGQDH-ALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGET-------------- 353 (728)
Q Consensus 298 ~~---------~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-------------- 353 (728)
.. .+... .......++..|.+|..+.++++|...|.+|+.. ++...++
T Consensus 120 ~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~--------D~~c~Ea~~~lvs~~mlt~~E 191 (611)
T KOG1173|consen 120 KDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA--------DAKCFEAFEKLVSAHMLTAQE 191 (611)
T ss_pred hhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc--------chhhHHHHHHHHHHHhcchhH
Confidence 00 01000 1112335778899999999999999999998765 2222222
Q ss_pred -------------------------------------------------------HHHHHHHHHHhCCHHHHHHHHHHHH
Q 004829 354 -------------------------------------------------------CRYVAEAHVQSLQFDEAEKICQMAL 378 (728)
Q Consensus 354 -------------------------------------------------------~~~la~~~~~~g~~~~A~~~~~~al 378 (728)
....+..++..++|.+..+.+...+
T Consensus 192 e~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~ll 271 (611)
T KOG1173|consen 192 EFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELL 271 (611)
T ss_pred HHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHH
Confidence 2222333333333333333333333
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004829 379 DIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHK 458 (728)
Q Consensus 379 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 458 (728)
+..|-+.. ..-..+| ++...|+..+ +|.-+..+. ...|..+..|+.+|..|...|++.+|..+|.+
T Consensus 272 e~dpfh~~-------~~~~~ia-~l~el~~~n~---Lf~lsh~LV---~~yP~~a~sW~aVg~YYl~i~k~seARry~SK 337 (611)
T KOG1173|consen 272 EKDPFHLP-------CLPLHIA-CLYELGKSNK---LFLLSHKLV---DLYPSKALSWFAVGCYYLMIGKYSEARRYFSK 337 (611)
T ss_pred hhCCCCcc-------hHHHHHH-HHHHhcccch---HHHHHHHHH---HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHH
Confidence 33222211 0111222 3333333221 111111111 23567778899999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 004829 459 ALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAV 538 (728)
Q Consensus 459 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 538 (728)
+-.+ ++..+.+|...|..+...|..++|+..|..|-+++.... .| ...+|.-|...+++.-|.
T Consensus 338 at~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h----lP-----~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 338 ATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH----LP-----SLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred Hhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc----ch-----HHHHHHHHHHhccHHHHH
Confidence 9998 899999999999999999999999999999999976532 23 456888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHH
Q 004829 539 KLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTIN 618 (728)
Q Consensus 539 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 618 (728)
.+|.+|+.+.|.. ..++..+|.+.+..+.|.+|..+|+.++...+....... .....+.+||.++.+++.++
T Consensus 401 ~Ff~~A~ai~P~D-------plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 401 KFFKQALAIAPSD-------PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-FWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred HHHHHHHhcCCCc-------chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc-chhHHHHhHHHHHHHHhhHH
Confidence 9999999998876 357788999999999999999999999988777766644 45678999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 619 EAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 619 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
+|+.+|++++.+ .|....++..+|.+|..+|+++.|+++|.+++.+.
T Consensus 473 eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 473 EAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 999999999999 88888899999999999999999999999999864
No 35
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=7.7e-19 Score=176.83 Aligned_cols=375 Identities=18% Similarity=0.183 Sum_probs=283.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChH
Q 004829 270 HVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHR 349 (728)
Q Consensus 270 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 349 (728)
-..|...+..|+|+.|+.+|..++.+.+ .+|. .|.+...+|..+|+|++|+..-.+.+++ .|.
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p----~nhv-----lySnrsaa~a~~~~~~~al~da~k~~~l--------~p~ 68 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSP----TNHV-----LYSNRSAAYASLGSYEKALKDATKTRRL--------NPD 68 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCC----Cccc-----hhcchHHHHHHHhhHHHHHHHHHHHHhc--------CCc
Confidence 3468889999999999999999998852 2332 3789999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHc-----------------------
Q 004829 350 VGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSK----------------------- 406 (728)
Q Consensus 350 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~----------------------- 406 (728)
++..|..+|..+.-+|+|++|+..|.+.|+..+.+.. .+..++.++...
T Consensus 69 w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~--------L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~ 140 (539)
T KOG0548|consen 69 WAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQ--------LKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTN 140 (539)
T ss_pred hhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHH--------HHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhh
Confidence 9999999999999999999999999999987654421 122222222000
Q ss_pred -----CCHHHHHHH----------------HHHHHHHHH--------h-------cCCC---------------h-----
Q 004829 407 -----GDYEAALEH----------------YVLASMSMA--------A-------NGHE---------------L----- 430 (728)
Q Consensus 407 -----g~~~~A~~~----------------~~~al~~~~--------~-------~~~~---------------~----- 430 (728)
-.|..-++. +.+++-... . .... .
T Consensus 141 ~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~ 220 (539)
T KOG0548|consen 141 YSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRV 220 (539)
T ss_pred hhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHH
Confidence 000000000 001100000 0 0000 0
Q ss_pred -hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC
Q 004829 431 -DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN 509 (728)
Q Consensus 431 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 509 (728)
..+.....+|...+...++..|++.|..++++ . .....+.+.+.+|+..|.+.+++..+..+++......
T Consensus 221 k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el--------~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r 291 (539)
T KOG0548|consen 221 KEKAHKEKELGNAAYKKKDFETAIQHYAKALEL--------A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR 291 (539)
T ss_pred HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH--------h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH
Confidence 12445678999999999999999999999998 5 5667788899999999999999999999887643321
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 510 HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKF 589 (728)
Q Consensus 510 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 589 (728)
.+...++.++..+|..|..+++++.|+.+|++++.-.+. ..+.......++++.......-+
T Consensus 292 --ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt---------------~~~ls~lk~~Ek~~k~~e~~a~~- 353 (539)
T KOG0548|consen 292 --ADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT---------------PDLLSKLKEAEKALKEAERKAYI- 353 (539)
T ss_pred --HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---------------HHHHHHHHHHHHHHHHHHHHHhh-
Confidence 112235566667888999999999999999998866543 23334444455555554443333
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829 590 RTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYV 669 (728)
Q Consensus 590 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a 669 (728)
.+..+.-...-|..++..|+|..|+.+|.+|+.. +|+....|.+.|.||.++|.+..|+...+.+
T Consensus 354 -------~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ 418 (539)
T KOG0548|consen 354 -------NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKC 418 (539)
T ss_pred -------ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 2334556666799999999999999999999998 8999999999999999999999999999999
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829 670 VGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNL 720 (728)
Q Consensus 670 l~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~ 720 (728)
+++ +|....+|.+-|.++..+.+|++|. ..+...++.+|.+.
T Consensus 419 ieL--------~p~~~kgy~RKg~al~~mk~ydkAl-eay~eale~dp~~~ 460 (539)
T KOG0548|consen 419 IEL--------DPNFIKAYLRKGAALRAMKEYDKAL-EAYQEALELDPSNA 460 (539)
T ss_pred Hhc--------CchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCchhH
Confidence 995 6999999999999999999999999 88888888887653
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=1.3e-18 Score=184.93 Aligned_cols=393 Identities=15% Similarity=0.128 Sum_probs=294.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCC
Q 004829 267 MCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGET 346 (728)
Q Consensus 267 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 346 (728)
..+...|...+..|++++|+.++.+++... +.++. .|..||.+|..+|+.+++..++-.|-.+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-----p~~~~----ay~tL~~IyEqrGd~eK~l~~~llAAHL-------- 202 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-----PRNPI----AYYTLGEIYEQRGDIEKALNFWLLAAHL-------- 202 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----ccchh----hHHHHHHHHHHcccHHHHHHHHHHHHhc--------
Confidence 335667888888899999999999999875 44433 4999999999999999999999888877
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 004829 347 DHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAAN 426 (728)
Q Consensus 347 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 426 (728)
.|.....|..++....++|++.+|.-+|.+|++..|... ......+.+|.+.|++..|...|.+++.....
T Consensus 203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~--------~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~- 273 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW--------ELIYERSSLYQKTGDLKRAMETFLQLLQLDPP- 273 (895)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch--------HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc-
Confidence 666669999999999999999999999999999876652 34677889999999999999999988766430
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH---
Q 004829 427 GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALK--- 503 (728)
Q Consensus 427 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--- 503 (728)
.+-...-......+..+...++-+.|+..++.++.... .......+..++.++....+++.|.........
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~------~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~ 347 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK------DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRES 347 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc------ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcccc
Confidence 11112233445557788888888999999999888422 333344566788999999999999988776655
Q ss_pred -------------------HHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Q 004829 504 -------------------IYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQ 564 (728)
Q Consensus 504 -------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 564 (728)
++.- . ..-......+...++.+..+.++..+++..+..--.. ........+..
T Consensus 348 e~d~~e~~~~~~~~~~~~~~~~~-~-~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~------~~~d~~dL~~d 419 (895)
T KOG2076|consen 348 EKDDSEWDTDERRREEPNALCEV-G-KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV------WVSDDVDLYLD 419 (895)
T ss_pred CCChhhhhhhhhccccccccccC-C-CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC------ChhhhHHHHHH
Confidence 1111 0 0111122223555666666666666666555432211 12345678899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004829 565 MGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLG 644 (728)
Q Consensus 565 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 644 (728)
++.+|...|++.+|+.+|..+... .....+.+|+.+|.||..+|.+++|+++|++++.. .|+...
T Consensus 420 ~a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~D 484 (895)
T KOG2076|consen 420 LADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNLD 484 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCchh
Confidence 999999999999999999888754 12233678999999999999999999999999999 889999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHH-HHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhh
Q 004829 645 VYSNLAGTYDAMGRIDDAIEILEYVVGMRE-EKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDS 715 (728)
Q Consensus 645 ~~~~La~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~ 715 (728)
+...|+.+|..+|++++|.+.++....-.. ..-+...+...........+|...|+.++-+ .....+++.
T Consensus 485 ~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi-~t~~~Lv~~ 555 (895)
T KOG2076|consen 485 ARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI-NTASTLVDD 555 (895)
T ss_pred hhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHH
Confidence 999999999999999999988887442100 0001123445667788999999999999977 555555553
No 37
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.86 E-value=3.2e-17 Score=189.08 Aligned_cols=414 Identities=11% Similarity=0.068 Sum_probs=265.4
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcC
Q 004829 222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDG 301 (728)
Q Consensus 222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 301 (728)
...+...-..+...| ++++|+..+++.... +.. +.....+..+...+...|..++|..+|+....
T Consensus 370 ~~~~~~~y~~l~r~G-~l~eAl~Lfd~M~~~------gvv-~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~------- 434 (1060)
T PLN03218 370 SPEYIDAYNRLLRDG-RIKDCIDLLEDMEKR------GLL-DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN------- 434 (1060)
T ss_pred chHHHHHHHHHHHCc-CHHHHHHHHHHHHhC------CCC-CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-------
Confidence 444555556666776 899999988876541 111 12233344455667777888888877765432
Q ss_pred CchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829 302 QDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIH 381 (728)
Q Consensus 302 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 381 (728)
+ ...+|..+-..|...|++++|..+|.++.+.. -.....+|..+...|.+.|++++|..+|+++....
T Consensus 435 p-----d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G 502 (1060)
T PLN03218 435 P-----TLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-------LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG 502 (1060)
T ss_pred C-----CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC
Confidence 1 22346777777778888888888887766541 11233566777777888888888888877765421
Q ss_pred HHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004829 382 RENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALT 461 (728)
Q Consensus 382 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 461 (728)
..++ ..+|..+...|.+.|++++|+..|..... .+..|+ ..+|..+...|.+.|++++|.+.|.+...
T Consensus 503 ---v~Pd----vvTynaLI~gy~k~G~~eeAl~lf~~M~~----~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 503 ---VEAN----VHTFGALIDGCARAGQVAKAFGAYGIMRS----KNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred ---CCCC----HHHHHHHHHHHHHCcCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111 23577777788888888888887766532 233333 35677777788888888888888777654
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829 462 AFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLL 541 (728)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 541 (728)
.... -.|+ ..+|..+...|.+.|++++|.++|+.+.+..- .....+|..+...|.+.|++++|+.+|
T Consensus 571 ~~~g----i~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi--------~p~~~tynsLI~ay~k~G~~deAl~lf 637 (1060)
T PLN03218 571 ETHP----IDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNI--------KGTPEVYTIAVNSCSQKGDWDFALSIY 637 (1060)
T ss_pred hcCC----CCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--------CCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 2100 1232 35667777778888888888888877665421 112456777777788888888888888
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 004829 542 NKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAA 621 (728)
Q Consensus 542 ~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 621 (728)
.+..+. +..+. ..+|..+...|.+.|++++|..++.++.+. +-. + ...++..+...|.+.|++++|.
T Consensus 638 ~eM~~~-----Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----G~~-p--d~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 638 DDMKKK-----GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ----GIK-L--GTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred HHHHHc-----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCC-C--CHHHHHHHHHHHHhCCCHHHHH
Confidence 776543 22222 345667777788888888888877776543 111 1 2356777777888888888888
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCh
Q 004829 622 DLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRV 701 (728)
Q Consensus 622 ~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~ 701 (728)
.+|++.... + ..|+ ..+|..|...|.+.|++++|+++|++.... | -.|+. ..+..|...+.+.|++
T Consensus 705 ~lf~eM~~~-----g-~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~-----G-i~Pd~-~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 705 ELYEDIKSI-----K-LRPT-VSTMNALITALCEGNQLPKALEVLSEMKRL-----G-LCPNT-ITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHHHHc-----C-CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----C-CCCCH-HHHHHHHHHHHHCCCH
Confidence 887776542 1 1333 346777778888888888888888776542 1 22333 3455566777788888
Q ss_pred hHHHHHHHHHHHhh
Q 004829 702 RNRKSRSLVTFLDS 715 (728)
Q Consensus 702 ~~A~~~~l~~ll~~ 715 (728)
++|. ..+..+++.
T Consensus 771 e~A~-~l~~~M~k~ 783 (1060)
T PLN03218 771 DVGL-DLLSQAKED 783 (1060)
T ss_pred HHHH-HHHHHHHHc
Confidence 8887 666666543
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=8.2e-19 Score=186.29 Aligned_cols=355 Identities=13% Similarity=0.091 Sum_probs=274.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCc
Q 004829 310 AGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPAS 389 (728)
Q Consensus 310 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 389 (728)
..++..|...+..|++++|+.++.++++. +|....+|..||.+|.++|+.+++....-.|-.+.|+..
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~---- 207 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY---- 207 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh----
Confidence 34778888888999999999999999998 899999999999999999999999988887776655443
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 004829 390 IEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGE 469 (728)
Q Consensus 390 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 469 (728)
..|..++.....+|++.+|.-+|.+|+.. .|......+..+.+|.++|++..|...|.+++.+....
T Consensus 208 ----e~W~~ladls~~~~~i~qA~~cy~rAI~~------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~--- 274 (895)
T KOG2076|consen 208 ----ELWKRLADLSEQLGNINQARYCYSRAIQA------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV--- 274 (895)
T ss_pred ----HHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch---
Confidence 35889999999999999999999999976 56667888999999999999999999999999982211
Q ss_pred CCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Q 004829 470 NHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALK--- 546 (728)
Q Consensus 470 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--- 546 (728)
+...........+..+...++-+.|++.++.++...... .....+..++.++.....++.|.........
T Consensus 275 d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~-------~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~ 347 (895)
T KOG2076|consen 275 DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE-------ASLEDLNILAELFLKNKQSDKALMKIVDDRNRES 347 (895)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc-------ccccHHHHHHHHHHHhHHHHHhhHHHHHHhcccc
Confidence 011223334455788888888899999999999843221 1233456788899999999999888766554
Q ss_pred -------------------HHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 004829 547 -------------------IYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQM 607 (728)
Q Consensus 547 -------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 607 (728)
+.+-..+....+..+...++.+..+.++..+++..+..--. .........+..+
T Consensus 348 e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n-------~~~~d~~dL~~d~ 420 (895)
T KOG2076|consen 348 EKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN-------VWVSDDVDLYLDL 420 (895)
T ss_pred CCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc-------CChhhhHHHHHHH
Confidence 11111111122222455666666666776666655543221 1234456789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHH
Q 004829 608 GLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDE 687 (728)
Q Consensus 608 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~ 687 (728)
+.+|...|++.+|+.+|..+...- ......+|+.+|.||..+|.+++|+++|++++.+ .|++.++
T Consensus 421 a~al~~~~~~~~Al~~l~~i~~~~-------~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~D~ 485 (895)
T KOG2076|consen 421 ADALTNIGKYKEALRLLSPITNRE-------GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNLDA 485 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCc-------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCchhh
Confidence 999999999999999999887641 1123668999999999999999999999999995 4999999
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHhhcccc
Q 004829 688 KRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN 719 (728)
Q Consensus 688 ~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~ 719 (728)
...|+.+|..+|+.++|. ..++.+..-++.+
T Consensus 486 Ri~Lasl~~~~g~~Ekal-EtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 486 RITLASLYQQLGNHEKAL-ETLEQIINPDGRN 516 (895)
T ss_pred hhhHHHHHHhcCCHHHHH-HHHhcccCCCccc
Confidence 999999999999999999 7777766444333
No 39
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.83 E-value=2.4e-17 Score=188.43 Aligned_cols=266 Identities=13% Similarity=0.095 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 004829 395 DRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAV 474 (728)
Q Consensus 395 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 474 (728)
+++.+...|.+.|++++|...|+... .....+|..+...|...|++++|+.+|++.... +-.| .
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~---------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~------g~~p-d 324 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMP---------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS------GVSI-D 324 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCC---------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-C
Confidence 45667788888888888888887542 223457888888888888888888888877543 1122 2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004829 475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ 554 (728)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 554 (728)
..++..+..++...|++++|.+.+..+++..-. ....++..+...|.+.|++++|...|++..+ .
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~--------~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~---- 389 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP--------LDIVANTALVDLYSKWGRMEDARNVFDRMPR---K---- 389 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC--------CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---C----
Confidence 346777777777888888888777777665211 1234556667777777777777777765431 0
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829 555 QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKE 634 (728)
Q Consensus 555 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 634 (728)
...+|+.+...|.+.|+.++|++.|++.... +-. + ...++..+..++...|..++|..+|+...+..
T Consensus 390 ---d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~----g~~-P--d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~--- 456 (697)
T PLN03081 390 ---NLISWNALIAGYGNHGRGTKAVEMFERMIAE----GVA-P--NHVTFLAVLSACRYSGLSEQGWEIFQSMSENH--- 456 (697)
T ss_pred ---CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC-C--CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc---
Confidence 0234566677777777777777777765532 111 1 12345555556666666666666665554320
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChHHHHHH--------------------------------HHHHHHHHHHHcCCCCh
Q 004829 635 YGPYHHDTLGVYSNLAGTYDAMGRIDDAIEI--------------------------------LEYVVGMREEKLGTANP 682 (728)
Q Consensus 635 ~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~--------------------------------~~~al~~~~~~~~~~~p 682 (728)
+ ..|+ ...|..+..+|.+.|++++|.++ +++.++ ..|
T Consensus 457 -g-~~p~-~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--------~~p 525 (697)
T PLN03081 457 -R-IKPR-AMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--------MGP 525 (697)
T ss_pred -C-CCCC-ccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--------CCC
Confidence 0 0111 12344444445555555555444 444433 235
Q ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhc
Q 004829 683 DVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSN 716 (728)
Q Consensus 683 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~ 716 (728)
+....|..|..+|...|++++|. +.++.+.+..
T Consensus 526 ~~~~~y~~L~~~y~~~G~~~~A~-~v~~~m~~~g 558 (697)
T PLN03081 526 EKLNNYVVLLNLYNSSGRQAEAA-KVVETLKRKG 558 (697)
T ss_pred CCCcchHHHHHHHHhCCCHHHHH-HHHHHHHHcC
Confidence 45556778888888888888888 7777766543
No 40
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.83 E-value=1.3e-17 Score=190.57 Aligned_cols=374 Identities=14% Similarity=0.066 Sum_probs=230.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC
Q 004829 223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ 302 (728)
Q Consensus 223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 302 (728)
..+..+...+...+ +++.|...+...... + -.|+ ...+..+...|.+.|++++|..+|++....
T Consensus 124 ~t~~~ll~a~~~~~-~~~~a~~l~~~m~~~------g-~~~~-~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~------- 187 (697)
T PLN03081 124 STYDALVEACIALK-SIRCVKAVYWHVESS------G-FEPD-QYMMNRVLLMHVKCGMLIDARRLFDEMPER------- 187 (697)
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHh------C-CCcc-hHHHHHHHHHHhcCCCHHHHHHHHhcCCCC-------
Confidence 45556666677775 788888887776653 2 1233 455788889999999999999999987531
Q ss_pred chhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH----------------------------cCCCChHHHHHH
Q 004829 303 DHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV----------------------------LGETDHRVGETC 354 (728)
Q Consensus 303 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------------------------~~~~~~~~~~~~ 354 (728)
...+|..+...|...|++++|+.+|++.+...... ....-.....++
T Consensus 188 -----~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~ 262 (697)
T PLN03081 188 -----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS 262 (697)
T ss_pred -----CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeH
Confidence 12348899999999999999999999886431000 000000112244
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHH
Q 004829 355 RYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVAS 434 (728)
Q Consensus 355 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 434 (728)
..|...|.+.|++++|...|++... ++ ..+|+.+...|...|++++|+..|.+... .+-.|+ ..
T Consensus 263 n~Li~~y~k~g~~~~A~~vf~~m~~-------~~----~vt~n~li~~y~~~g~~~eA~~lf~~M~~----~g~~pd-~~ 326 (697)
T PLN03081 263 CALIDMYSKCGDIEDARCVFDGMPE-------KT----TVAWNSMLAGYALHGYSEEALCLYYEMRD----SGVSID-QF 326 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC-------CC----hhHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCCC-HH
Confidence 5677788888999988888876531 11 24688888888899999999888876542 122333 23
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHH----------------
Q 004829 435 IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYC---------------- 498 (728)
Q Consensus 435 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~---------------- 498 (728)
++..+...+...|++++|.+.+..+++. ..+....++..|...|.+.|++++|...|
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~-------g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~ 399 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRT-------GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHh-------CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 5666666777777777777766665543 11222334444455555555555555554
Q ss_pred ---------------HHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 004829 499 ---------------ENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEA 563 (728)
Q Consensus 499 ---------------~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 563 (728)
++.....- .| ...++..+...+...|..++|..+|+...+...-. +. ...|.
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~-------~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~----p~-~~~y~ 466 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGV-------AP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK----PR-AMHYA 466 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-------CC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC----CC-ccchH
Confidence 44433210 01 12234444444444455555544444443321111 11 12345
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004829 564 QMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTL 643 (728)
Q Consensus 564 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 643 (728)
.+..+|.+.|++++|.+.++++ ... + ...+|..+...+...|+++.|...+++.+.+ .|+..
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~-------~~~-p--~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--------~p~~~ 528 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRA-------PFK-P--TVNMWAALLTACRIHKNLELGRLAAEKLYGM--------GPEKL 528 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHC-------CCC-C--CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--------CCCCC
Confidence 5566666666666666555432 111 1 1345677777777777777777777776655 56556
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 644 GVYSNLAGTYDAMGRIDDAIEILEYVVG 671 (728)
Q Consensus 644 ~~~~~La~~~~~~g~~~~A~~~~~~al~ 671 (728)
..|..|+.+|...|++++|.++++...+
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 6888999999999999999999988765
No 41
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.83 E-value=9.3e-17 Score=152.20 Aligned_cols=321 Identities=14% Similarity=0.054 Sum_probs=257.4
Q ss_pred ChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829 262 SLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQ 341 (728)
Q Consensus 262 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 341 (728)
++..+.-.+.+|..++..|++..|+..|..|++.. ++ ...+++..|.+|..+|+-.-|+..+.+++++
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~d-----p~----~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--- 101 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGD-----PN----NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--- 101 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-----ch----hHHHHHHHHHHHhhhcCCccchhhHHHHHhc---
Confidence 35556668889999999999999999999999875 22 3346899999999999999999999999999
Q ss_pred HcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCC-------cHHHHHHHHHHHHHHHHcCCHHHHHH
Q 004829 342 VLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA-------SIEEAADRRLMGLICDSKGDYEAALE 414 (728)
Q Consensus 342 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~a~~~~~lg~~~~~~g~~~~A~~ 414 (728)
.|+...+....|.++.++|++++|+.-|..+++..+...... .+..-..+......++..|++..|++
T Consensus 102 -----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 102 -----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred -----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHH
Confidence 899999999999999999999999999999997665433211 11122334455566778899999999
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHH
Q 004829 415 HYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDS 494 (728)
Q Consensus 415 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 494 (728)
+....+++ .|..+..+...+.||...|+...|+..++.+-.+ ..+....++.++.+++..|+.+.+
T Consensus 177 ~i~~llEi------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL--------s~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 177 MITHLLEI------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL--------SQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HHHHHHhc------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHhhhhHHHH
Confidence 99988866 5778889999999999999999999999999887 666778899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCcHHHHHHHHHH---------HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 004829 495 KSYCENALKIYGKPNHGIPSEEIASGLIDI---------AAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQM 565 (728)
Q Consensus 495 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 565 (728)
+...++++++. +++......|..+ +.-....++|.++++..++.++..+.. ..........+
T Consensus 243 L~~iRECLKld------pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~---~~ir~~~~r~~ 313 (504)
T KOG0624|consen 243 LKEIRECLKLD------PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEE---TMIRYNGFRVL 313 (504)
T ss_pred HHHHHHHHccC------cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcc---cceeeeeehee
Confidence 99999999983 2333333333332 223345667777777777766654432 22223444567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 566 GVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 566 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
..|+...|++.+|+..+.+++.+ .+..+.++...|.+|+....|+.|+..|++|.+.
T Consensus 314 c~C~~~d~~~~eAiqqC~evL~~--------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 314 CTCYREDEQFGEAIQQCKEVLDI--------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred eecccccCCHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 88899999999999999999987 5556789999999999999999999999999988
No 42
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.83 E-value=8.6e-17 Score=168.28 Aligned_cols=434 Identities=13% Similarity=0.061 Sum_probs=323.6
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhc
Q 004829 221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLED 300 (728)
Q Consensus 221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 300 (728)
.+..+-.+...+...| +|+.+.+.|++++...-. ....|+.++.+|...|.-..|+.+++..+...+
T Consensus 322 d~ai~d~Lt~al~~~g-~f~~lae~fE~~~~~~~~---------~~e~w~~~als~saag~~s~Av~ll~~~~~~~~--- 388 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCG-QFEVLAEQFEQALPFSFG---------EHERWYQLALSYSAAGSDSKAVNLLRESLKKSE--- 388 (799)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhh---------hHHHHHHHHHHHHHhccchHHHHHHHhhccccc---
Confidence 3444455555666666 899999999998876422 244588899999999999999999998886642
Q ss_pred CCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC-----------CHHH
Q 004829 301 GQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSL-----------QFDE 369 (728)
Q Consensus 301 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~ 369 (728)
.+.++.. .++.-..|+...+.+++++.+..+++...... .......++..+|.+|-.+- ...+
T Consensus 389 ~ps~~s~---~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~k 462 (799)
T KOG4162|consen 389 QPSDISV---LLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKK 462 (799)
T ss_pred CCCcchH---HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHH
Confidence 1222222 35555566677899999999999999976332 23445667777777775432 2456
Q ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCH
Q 004829 370 AEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARF 449 (728)
Q Consensus 370 A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 449 (728)
+++.+++++++.+.++ .+.+.++.-|..+++.+.|..+..+++.+. ....+.+|..++.++...+++
T Consensus 463 slqale~av~~d~~dp--------~~if~lalq~A~~R~l~sAl~~~~eaL~l~-----~~~~~~~whLLALvlSa~kr~ 529 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDP--------LVIFYLALQYAEQRQLTSALDYAREALALN-----RGDSAKAWHLLALVLSAQKRL 529 (799)
T ss_pred HHHHHHHHHhcCCCCc--------hHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHhhhhhh
Confidence 6777777776655443 358889999999999999999999988652 234567899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHH
Q 004829 450 DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQ 529 (728)
Q Consensus 450 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~ 529 (728)
.+|+.....+++- .+.+.........+-...++.++|+..+...+.+++...+-...-+........+.+..
T Consensus 530 ~~Al~vvd~al~E--------~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~l 601 (799)
T KOG4162|consen 530 KEALDVVDAALEE--------FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHL 601 (799)
T ss_pred HHHHHHHHHHHHH--------hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccccc
Confidence 9999999999987 44444444455556666899999999999999998753211001111222222333444
Q ss_pred HcCCHHHHHHHHHHHHHHHhcC----------------CCCC---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829 530 SMNELEQAVKLLNKALKIYGKT----------------PGQQ---STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR 590 (728)
Q Consensus 530 ~~g~~~~A~~~~~~al~~~~~~----------------~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 590 (728)
...+..+|...+.++..+.... ++.. .....++...+..+...++.++|..++.++-.+
T Consensus 602 a~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-- 679 (799)
T KOG4162|consen 602 ALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-- 679 (799)
T ss_pred CcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--
Confidence 4556666666666655544311 1111 123345667888999999999999999999887
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH--HHHH
Q 004829 591 TSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE--ILEY 668 (728)
Q Consensus 591 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~--~~~~ 668 (728)
.+..+..|+..|.++...|++++|.+.|..|+.+ +|+...+...+|.++...|+..-|.. ++..
T Consensus 680 ------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~d 745 (799)
T KOG4162|consen 680 ------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLSD 745 (799)
T ss_pred ------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 4567789999999999999999999999999999 88888899999999999999888888 9999
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccc
Q 004829 669 VVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN 719 (728)
Q Consensus 669 al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~ 719 (728)
++++ +|...++|+.||.++..+|+.++|. .++...+...+.+
T Consensus 746 alr~--------dp~n~eaW~~LG~v~k~~Gd~~~Aa-ecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 746 ALRL--------DPLNHEAWYYLGEVFKKLGDSKQAA-ECFQAALQLEESN 787 (799)
T ss_pred HHhh--------CCCCHHHHHHHHHHHHHccchHHHH-HHHHHHHhhccCC
Confidence 9984 5888999999999999999999999 9999988877664
No 43
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=4.9e-17 Score=182.49 Aligned_cols=401 Identities=11% Similarity=-0.003 Sum_probs=292.5
Q ss_pred hhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004829 263 LEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV 342 (728)
Q Consensus 263 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 342 (728)
|..+...+..+.+.++.|+++.|+..|+++++.. +..+.. ...++.++...|+.++|+.++++++.-
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-----P~~~~a----v~dll~l~~~~G~~~~A~~~~eka~~p---- 97 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG-----PLQSGQ----VDDWLQIAGWAGRDQEVIDVYERYQSS---- 97 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-----ccchhh----HHHHHHHHHHcCCcHHHHHHHHHhccC----
Confidence 4456667888999999999999999999999875 444322 227778888889999999999999822
Q ss_pred cCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 343 LGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMS 422 (728)
Q Consensus 343 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 422 (728)
.+.....+..+|.+|...|++++|+++|+++++..|... .++..++.++...++.++|+..+.++...
T Consensus 98 ----~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~--------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 98 ----MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP--------DLISGMIMTQADAGRGGVVLKQATELAER 165 (822)
T ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--------HHHHHHHHHHhhcCCHHHHHHHHHHhccc
Confidence 345556666778899999999999999999998877653 24667789999999999999999887644
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHH---
Q 004829 423 MAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCE--- 499 (728)
Q Consensus 423 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--- 499 (728)
.+... .+..++.++...++..+|+..|+++++. .|....++..+..++...|-...|.+...
T Consensus 166 ------dp~~~-~~l~layL~~~~~~~~~AL~~~ekll~~--------~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 166 ------DPTVQ-NYMTLSYLNRATDRNYDALQASSEAVRL--------APTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred ------CcchH-HHHHHHHHHHhcchHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 33322 2345566666678887799999999998 66666666666565555555444443332
Q ss_pred --------------------------------------HHHHHHcCCCC-----CCCcHHHHHHHHHHHHHHHHcCCHHH
Q 004829 500 --------------------------------------NALKIYGKPNH-----GIPSEEIASGLIDIAAIYQSMNELEQ 536 (728)
Q Consensus 500 --------------------------------------~al~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~ 536 (728)
+++........ +..++....+....-.++...|++.+
T Consensus 231 ~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~ 310 (822)
T PRK14574 231 NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTAD 310 (822)
T ss_pred cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 12221111110 11223344556666667788889999
Q ss_pred HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCC
Q 004829 537 AVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYT 616 (728)
Q Consensus 537 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 616 (728)
++..|+......... + ..+....|..|+.+++.++|+.+|.+++.-...... .+........|-.+|+..++
T Consensus 311 vi~~y~~l~~~~~~~----P--~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~--~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 311 LIKEYEAMEAEGYKM----P--DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFR--NSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HHHHHHHhhhcCCCC----C--HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccC--CCcchHHHHHHHHHHHhccc
Confidence 998888655332222 2 235567899999999999999999998764211101 11112234567788999999
Q ss_pred HHHHHHHHHHHHHHHHH-h--c----CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Q 004829 617 INEAADLFEEARTILEK-E--Y----GPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKR 689 (728)
Q Consensus 617 ~~~A~~~~~~al~~~~~-~--~----~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~ 689 (728)
+++|..++++..+...- . . ...+|+.......++.++...|++.+|++.+++.+.. .|.+...+.
T Consensus 383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--------aP~n~~l~~ 454 (822)
T PRK14574 383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--------APANQNLRI 454 (822)
T ss_pred HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHH
Confidence 99999999998763110 0 1 1357788889999999999999999999999999884 488888999
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829 690 RLAELLKEAGRVRNRKSRSLVTFLDSNSQNL 720 (728)
Q Consensus 690 ~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~ 720 (728)
.+|.++...|++.+|. ..++.+...+|...
T Consensus 455 ~~A~v~~~Rg~p~~A~-~~~k~a~~l~P~~~ 484 (822)
T PRK14574 455 ALASIYLARDLPRKAE-QELKAVESLAPRSL 484 (822)
T ss_pred HHHHHHHhcCCHHHHH-HHHHHHhhhCCccH
Confidence 9999999999999999 87788887777754
No 44
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.82 E-value=6.8e-16 Score=183.29 Aligned_cols=420 Identities=15% Similarity=0.062 Sum_probs=303.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC
Q 004829 223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ 302 (728)
Q Consensus 223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 302 (728)
..+...+..+...| ++.+|+.++..+-. ....+..+...+..+...|++..+..++..+- ... ..
T Consensus 342 ~lh~raa~~~~~~g-~~~~Al~~a~~a~d----------~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp-~~~---~~ 406 (903)
T PRK04841 342 ELHRAAAEAWLAQG-FPSEAIHHALAAGD----------AQLLRDILLQHGWSLFNQGELSLLEECLNALP-WEV---LL 406 (903)
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHCCC----------HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCC-HHH---Hh
Confidence 34444455556665 77777776655421 13344556667888888899888777765531 110 01
Q ss_pred chhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829 303 DHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETD-HRVGETCRYVAEAHVQSLQFDEAEKICQMALDIH 381 (728)
Q Consensus 303 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 381 (728)
..+. .....+.++...|++++|..++..+...........+ .....+...++.++...|++++|..++++++...
T Consensus 407 ~~~~----l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 482 (903)
T PRK04841 407 ENPR----LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL 482 (903)
T ss_pred cCcc----hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 1111 2466788888999999999999988766432100011 1234556668889999999999999999998753
Q ss_pred HHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004829 382 RENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALT 461 (728)
Q Consensus 382 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 461 (728)
+.. .....+.++..+|.++...|++++|...+.+++......+.......++..+|.++...|++++|..++++++.
T Consensus 483 ~~~---~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 559 (903)
T PRK04841 483 PLT---WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQ 559 (903)
T ss_pred CCc---cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 321 22334456788999999999999999999999988887776666677889999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829 462 AFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLL 541 (728)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 541 (728)
+.....+...+.....+..+|.++...|++++|...+.+++.+..... ......++..++.++...|++++|...+
T Consensus 560 ~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~la~~~~~~G~~~~A~~~l 635 (903)
T PRK04841 560 LIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ----PQQQLQCLAMLAKISLARGDLDNARRYL 635 (903)
T ss_pred HHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC----chHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 988764333444555677889999999999999999999999876532 2335567788999999999999999999
Q ss_pred HHHHHHHhcCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Q 004829 542 NKALKIYGKTPGQQS-TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEA 620 (728)
Q Consensus 542 ~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 620 (728)
.++..+.... +... ............+...|+.+.|..++...... ...........+..+|.++...|++++|
T Consensus 636 ~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~----~~~~~~~~~~~~~~~a~~~~~~g~~~~A 710 (903)
T PRK04841 636 NRLENLLGNG-RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP----EFANNHFLQGQWRNIARAQILLGQFDEA 710 (903)
T ss_pred HHHHHHHhcc-cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC----CCccchhHHHHHHHHHHHHHHcCCHHHH
Confidence 9999886654 2111 11111111234556688999988887665431 1111111233456789999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004829 621 ADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREE 675 (728)
Q Consensus 621 ~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~ 675 (728)
...+++++...+.... ......++..+|.++...|+.++|..++.+++.+...
T Consensus 711 ~~~l~~al~~~~~~g~--~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 711 EIILEELNENARSLRL--MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 9999999998655432 3456778899999999999999999999999998743
No 45
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.81 E-value=1.4e-15 Score=175.73 Aligned_cols=344 Identities=14% Similarity=0.082 Sum_probs=251.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCch
Q 004829 225 LLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDH 304 (728)
Q Consensus 225 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 304 (728)
+..+...+...| ++++|...+.+.... ...|+ ...|..+...|.+.|++++|..+|+++.... . .
T Consensus 440 yn~LL~a~~k~g-~~e~A~~lf~~M~~~-------Gl~pD-~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-----v-~ 504 (1060)
T PLN03218 440 FNMLMSVCASSQ-DIDGALRVLRLVQEA-------GLKAD-CKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-----V-E 504 (1060)
T ss_pred HHHHHHHHHhCc-CHHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-----C-C
Confidence 344445555665 777777777766542 12232 4457788888999999999999998877531 1 1
Q ss_pred hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 004829 305 ALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHREN 384 (728)
Q Consensus 305 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 384 (728)
....+|..+...|...|++++|+.+|....... -.|+ ..+|..+...|.+.|++++|.+++.++......
T Consensus 505 --PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G------v~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g- 574 (1060)
T PLN03218 505 --ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN------VKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHP- 574 (1060)
T ss_pred --CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC------CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-
Confidence 123458888999999999999999998876541 1333 457888888999999999999999888653111
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829 385 TSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFK 464 (728)
Q Consensus 385 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 464 (728)
..++ ..++..+...|.+.|++++|.+.|+..... +- +....+|..+...|.+.|++++|+.+|.+....
T Consensus 575 i~PD----~vTynaLI~ay~k~G~ldeA~elf~~M~e~----gi-~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-- 643 (1060)
T PLN03218 575 IDPD----HITVGALMKACANAGQVDRAKEVYQMIHEY----NI-KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-- 643 (1060)
T ss_pred CCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--
Confidence 1111 246788888999999999999999876532 22 223467888889999999999999999887664
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829 465 SAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKA 544 (728)
Q Consensus 465 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 544 (728)
+-.|+ ..+|..+...|...|++++|..+++.+.+.... ....+|..+...|.+.|++++|..+|++.
T Consensus 644 ----Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~--------pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 644 ----GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIK--------LGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred ----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 22343 457888889999999999999999988765211 13457888999999999999999999887
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829 545 LKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLF 624 (728)
Q Consensus 545 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 624 (728)
... +..+. ..+|..+...|.+.|++++|+++|+++... +-. + ....|..+...|...|++++|..+|
T Consensus 711 ~~~-----g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~----Gi~-P--d~~Ty~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 711 KSI-----KLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRL----GLC-P--NTITYSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred HHc-----CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCC-C--CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 543 22222 356888999999999999999999987643 211 1 1356777778899999999999999
Q ss_pred HHHHHH
Q 004829 625 EEARTI 630 (728)
Q Consensus 625 ~~al~~ 630 (728)
.++++.
T Consensus 778 ~~M~k~ 783 (1060)
T PLN03218 778 SQAKED 783 (1060)
T ss_pred HHHHHc
Confidence 998764
No 46
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=9.6e-16 Score=148.91 Aligned_cols=426 Identities=13% Similarity=0.051 Sum_probs=299.5
Q ss_pred CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh-----------cCCCChhHHHHHHHHHHHHHHcCChhHHHH
Q 004829 219 PALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICA-----------NGKPSLEQVMCLHVLAAIHCSLGQYNEAIP 287 (728)
Q Consensus 219 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~-----------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 287 (728)
|..-..+..+....+.. ++|..|+..|..++..-.... ...+.+.........+.||...++-+.|+.
T Consensus 40 ~~~yqll~yl~~~~~h~-r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~ 118 (564)
T KOG1174|consen 40 DVEYQVLLYLLNANYKE-RNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIE 118 (564)
T ss_pred hHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHH
Confidence 34445555555555555 367777777777766532210 011223345556778999999999999999
Q ss_pred HHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--------------------------
Q 004829 288 VLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQ-------------------------- 341 (728)
Q Consensus 288 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------------------------- 341 (728)
.+.+..... ..|. ..+.++..+..-++..++.-.|...+..+.-
T Consensus 119 ~l~~~p~t~------r~p~----inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~ 188 (564)
T KOG1174|consen 119 TLLQVPPTL------RSPR----INLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAA 188 (564)
T ss_pred HHhcCCccc------cchh----HHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhhe
Confidence 887765432 1111 2445555555555544444444433322111
Q ss_pred HcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 342 VLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASM 421 (728)
Q Consensus 342 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 421 (728)
...+..+........+|.++....-+.-+..++-.-...++.+ ...+..+|.+++..|++.+|+..|+++..
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~N--------vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~ 260 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCN--------EHLMMALGKCLYYNGDYFQAEDIFSSTLC 260 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCcc--------HHHHHHHhhhhhhhcCchHHHHHHHHHhh
Confidence 0111222222223334444444444444444444433333332 34578899999999999999999999875
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829 422 SMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENA 501 (728)
Q Consensus 422 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 501 (728)
+ +|......-..|.++...|+++.-..+....+.+ ....+.-++--+.+++..+++..|+.+-+++
T Consensus 261 ~------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~--------~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~ 326 (564)
T KOG1174|consen 261 A------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK--------VKYTASHWFVHAQLLYDEKKFERALNFVEKC 326 (564)
T ss_pred C------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh--------hhcchhhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 5 6777778888888999999998877777777666 3334455666677888889999999999999
Q ss_pred HHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHH
Q 004829 502 LKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNT 581 (728)
Q Consensus 502 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 581 (728)
++.- +....++...|.++...++.++|+-.|+.|..+.+-. ..+|..|-.+|+..|++.+|...
T Consensus 327 I~~~---------~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r-------L~~Y~GL~hsYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 327 IDSE---------PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR-------LEIYRGLFHSYLAQKRFKEANAL 390 (564)
T ss_pred hccC---------cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh-------HHHHHHHHHHHHhhchHHHHHHH
Confidence 9883 3456778889999999999999999999998876543 56888899999999999999999
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh
Q 004829 582 LKSAISKFRTSGEKKSALFGIALNQMG-LACVQ-RYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRI 659 (728)
Q Consensus 582 ~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~ 659 (728)
.+.++..+.. .+.++..+| .+++. -.--++|..++++++.+ .|....+...+|.++...|++
T Consensus 391 An~~~~~~~~--------sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~ 454 (564)
T KOG1174|consen 391 ANWTIRLFQN--------SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--------NPIYTPAVNLIAELCQVEGPT 454 (564)
T ss_pred HHHHHHHhhc--------chhhhhhhcceeeccCchhHHHHHHHHHhhhcc--------CCccHHHHHHHHHHHHhhCcc
Confidence 9988887533 345666665 44443 33568999999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccc
Q 004829 660 DDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN 719 (728)
Q Consensus 660 ~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~ 719 (728)
++++.++++++..+ |+ ...+..||.++..++.+.+|. ..+..++..+|++
T Consensus 455 ~D~i~LLe~~L~~~--------~D-~~LH~~Lgd~~~A~Ne~Q~am-~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 455 KDIIKLLEKHLIIF--------PD-VNLHNHLGDIMRAQNEPQKAM-EYYYKALRQDPKS 504 (564)
T ss_pred chHHHHHHHHHhhc--------cc-cHHHHHHHHHHHHhhhHHHHH-HHHHHHHhcCccc
Confidence 99999999999854 44 356888999999999999999 8888888888875
No 47
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=5.3e-17 Score=152.89 Aligned_cols=287 Identities=19% Similarity=0.161 Sum_probs=233.5
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhh
Q 004829 216 LGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKP-SLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVE 294 (728)
Q Consensus 216 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 294 (728)
..+|....+|++.. ++.. .|...|-..+...+.+-.....+.. .-...+.-..+|.||+++|-+.+|...++.+++
T Consensus 175 a~~p~l~kaLFey~--fyhe-nDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~ 251 (478)
T KOG1129|consen 175 AERPTLVKALFEYL--FYHE-NDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLT 251 (478)
T ss_pred ccChHHHHHHHHHH--HHhh-hhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhh
Confidence 45666777776654 3334 2788887777666655333221111 122344567899999999999999999999997
Q ss_pred hhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004829 295 IPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKIC 374 (728)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 374 (728)
.. .++ .++..|+.+|....+...|+..|.+.++. .|.....+..+|.++..++++++|.++|
T Consensus 252 q~------~~~----dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lY 313 (478)
T KOG1129|consen 252 QF------PHP----DTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLY 313 (478)
T ss_pred cC------Cch----hHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHH
Confidence 63 333 34899999999999999999999999988 6888889999999999999999999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHH
Q 004829 375 QMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIF 454 (728)
Q Consensus 375 ~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 454 (728)
+.+++..+.+.+ +...+|..|+.-++.+-|+.+|++.+..- ......++++|.|++..++++-++.
T Consensus 314 k~vlk~~~~nvE--------aiAcia~~yfY~~~PE~AlryYRRiLqmG------~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 314 KLVLKLHPINVE--------AIACIAVGYFYDNNPEMALRYYRRILQMG------AQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHHhcCCccce--------eeeeeeeccccCCChHHHHHHHHHHHHhc------CCChHHHhhHHHHHHhhcchhhhHH
Confidence 999988765543 34567888999999999999999988762 3445689999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCH
Q 004829 455 SYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL 534 (728)
Q Consensus 455 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 534 (728)
.|++|+....+ ....+.+|++||.+....|++.-|..+|+-++.- +++...++++||.+-.+.|+.
T Consensus 380 sf~RAlstat~-----~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~---------d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 380 SFQRALSTATQ-----PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS---------DAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred HHHHHHhhccC-----cchhhhhhhccceeEEeccchHHHHHHHHHHhcc---------CcchHHHHHhHHHHHhhcCch
Confidence 99999987442 4556889999999999999999999999988765 556789999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 004829 535 EQAVKLLNKALKIYGKT 551 (728)
Q Consensus 535 ~~A~~~~~~al~~~~~~ 551 (728)
++|..++..|-...+..
T Consensus 446 ~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 446 LGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHHHHHHHHhhhhCccc
Confidence 99999999998877665
No 48
>PLN03077 Protein ECB2; Provisional
Probab=99.78 E-value=7e-16 Score=180.81 Aligned_cols=406 Identities=15% Similarity=0.065 Sum_probs=255.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH----------------------------HHHhcCCCChhHHHHHHHHHH
Q 004829 223 PFLLKQTREMISSGENPQKALELAKRAMKSF----------------------------EICANGKPSLEQVMCLHVLAA 274 (728)
Q Consensus 223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~----------------------------~~~~~~~~~~~~~~~~~~la~ 274 (728)
..+..+...|.+.| ++++|+.+|.+....- .......-.| ...++..+..
T Consensus 254 ~s~n~li~~~~~~g-~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-d~~~~n~Li~ 331 (857)
T PLN03077 254 ISWNAMISGYFENG-ECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV-DVSVCNSLIQ 331 (857)
T ss_pred chhHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc-chHHHHHHHH
Confidence 34666677788887 8999999988865420 0000000011 1334555566
Q ss_pred HHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 004829 275 IHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETC 354 (728)
Q Consensus 275 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 354 (728)
.|.+.|++++|..+|++... + ...+|..+...|...|++++|+.+|++..... -.|+. .++
T Consensus 332 ~y~k~g~~~~A~~vf~~m~~-------~-----d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g------~~Pd~-~t~ 392 (857)
T PLN03077 332 MYLSLGSWGEAEKVFSRMET-------K-----DAVSWTAMISGYEKNGLPDKALETYALMEQDN------VSPDE-ITI 392 (857)
T ss_pred HHHhcCCHHHHHHHHhhCCC-------C-----CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC------CCCCc-eeH
Confidence 66666666666666665432 1 11136666666666666666666666554331 12222 233
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHH
Q 004829 355 RYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVAS 434 (728)
Q Consensus 355 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 434 (728)
..+-..+...|+++.|.+++..+.+.... + ...+++.+...|.+.|++++|.+.|++.. .+ ...
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~---~----~~~~~n~Li~~y~k~g~~~~A~~vf~~m~--------~~-d~v 456 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGLI---S----YVVVANALIEMYSKCKCIDKALEVFHNIP--------EK-DVI 456 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCCC---c----chHHHHHHHHHHHHcCCHHHHHHHHHhCC--------CC-Cee
Confidence 33334555666666666666555432111 1 12356677778888888888888877542 11 234
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHH----------------------------------HHHHH
Q 004829 435 IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVA----------------------------------SVFVR 480 (728)
Q Consensus 435 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~----------------------------------~~~~~ 480 (728)
+|..+...|...|++++|+..|++.+.. . .|+.. ..+..
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~~---~----~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~na 529 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLLT---L----KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHhC---C----CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechH
Confidence 6777778888888888888888887531 1 22211 12233
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHH
Q 004829 481 LADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAG 560 (728)
Q Consensus 481 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 560 (728)
|...|.+.|++++|...|+.. .. ...+|..+...|...|+.++|+.+|++..+. +..+. ..
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~----~~---------d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g~~Pd-~~ 590 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH----EK---------DVVSWNILLTGYVAHGKGSMAVELFNRMVES-----GVNPD-EV 590 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc----CC---------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCC-cc
Confidence 446677777777777777653 11 2456788888888888888888888887643 21111 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004829 561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHH 640 (728)
Q Consensus 561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 640 (728)
++..+-..+.+.|++++|..+|+...+.. +-. + ....|..+..++.+.|++++|.+++++.- + .|
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~---gi~-P--~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~--------~p 655 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKY---SIT-P--NLKHYACVVDLLGRAGKLTEAYNFINKMP-I--------TP 655 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHh---CCC-C--chHHHHHHHHHHHhCCCHHHHHHHHHHCC-C--------CC
Confidence 34455567888888888888888776432 111 1 13567888888888899988888887641 1 34
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhc
Q 004829 641 DTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSN 716 (728)
Q Consensus 641 ~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~ 716 (728)
+ ..+|..|-..+...|+.+.|....++++++ .|+....+..|+.+|...|+|++|. +..+.+.+..
T Consensus 656 d-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--------~p~~~~~y~ll~n~ya~~g~~~~a~-~vr~~M~~~g 721 (857)
T PLN03077 656 D-PAVWGALLNACRIHRHVELGELAAQHIFEL--------DPNSVGYYILLCNLYADAGKWDEVA-RVRKTMRENG 721 (857)
T ss_pred C-HHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCcchHHHHHHHHHHCCChHHHH-HHHHHHHHcC
Confidence 4 335666667778888888888887777774 3667778899999999999999999 7777776543
No 49
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.78 E-value=5e-16 Score=147.34 Aligned_cols=320 Identities=15% Similarity=0.118 Sum_probs=252.5
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 004829 308 KFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP 387 (728)
Q Consensus 308 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 387 (728)
.+.-++.+|..+...|++.+|+..|..|++. +|....+++..|.+|..+|+-..|+.-+.+++++-++..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~-- 106 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM-- 106 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH--
Confidence 3445889999999999999999999999998 899999999999999999999999999999998865542
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC---------hhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004829 388 ASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHE---------LDVASIDCSIGDAYLSLARFDEAIFSYHK 458 (728)
Q Consensus 388 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 458 (728)
.+....|.++.++|++++|..-|...+..-...+.. ......+......++..|++..|+++...
T Consensus 107 ------~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 107 ------AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred ------HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 356788999999999999999999887542211111 01112233444556778999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 004829 459 ALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAV 538 (728)
Q Consensus 459 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 538 (728)
.|++ .|..+..+...+.+|...|+...|+..++.+-++. .+....++.++.+++..|+.+.++
T Consensus 181 llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs---------~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 181 LLEI--------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS---------QDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred HHhc--------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc---------ccchHHHHHHHHHHHhhhhHHHHH
Confidence 9998 89999999999999999999999999999998883 235678899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcH---HHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 004829 539 KLLNKALKIYGKTPGQQSTI---AGI--EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQ 613 (728)
Q Consensus 539 ~~~~~al~~~~~~~~~~~~~---~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 613 (728)
...++++++.++...-.+.. -.+ ...-+......++|.+++...++.++.- +...+.....+..+..|+..
T Consensus 244 ~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e----p~~~~ir~~~~r~~c~C~~~ 319 (504)
T KOG0624|consen 244 KEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE----PEETMIRYNGFRVLCTCYRE 319 (504)
T ss_pred HHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC----Ccccceeeeeeheeeecccc
Confidence 99999999876652111100 000 0111333455677777777777666541 11122223445667788899
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 614 RYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM 672 (728)
Q Consensus 614 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~ 672 (728)
.+++.+|+..+.+++.+ .|+.+.++...|.+|.....|+.|+.-|++|.++
T Consensus 320 d~~~~eAiqqC~evL~~--------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 320 DEQFGEAIQQCKEVLDI--------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred cCCHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 99999999999999999 9999999999999999999999999999999985
No 50
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=1.5e-17 Score=156.53 Aligned_cols=282 Identities=16% Similarity=0.151 Sum_probs=232.5
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 004829 361 HVQSLQFDEAEKICQMALDIHRENTS--PASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCS 438 (728)
Q Consensus 361 ~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 438 (728)
|+..++...|...+...+++...... ........--..+|.||.++|-+.+|.+.++.++.. ......+..
T Consensus 189 fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q-------~~~~dTfll 261 (478)
T KOG1129|consen 189 FYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ-------FPHPDTFLL 261 (478)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc-------CCchhHHHH
Confidence 44455666666555555544332221 111122223457999999999999999999988754 334567889
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHH
Q 004829 439 IGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIA 518 (728)
Q Consensus 439 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 518 (728)
|+.+|.+..+...|+..|.+.++. .|.....+..+|.++..++++++|.++|+.+++. ++...
T Consensus 262 LskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~---------~~~nv 324 (478)
T KOG1129|consen 262 LSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL---------HPINV 324 (478)
T ss_pred HHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc---------CCccc
Confidence 999999999999999999999997 8888999999999999999999999999999998 45566
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcH
Q 004829 519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSA 598 (728)
Q Consensus 519 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 598 (728)
++...+|.-|+..++.+-|+.+|++.+++--.. ...+.++|.|++..++++-++..|++|+..... +.
T Consensus 325 EaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s-------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~-----~~ 392 (478)
T KOG1129|consen 325 EAIACIAVGYFYDNNPEMALRYYRRILQMGAQS-------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-----PG 392 (478)
T ss_pred eeeeeeeeccccCCChHHHHHHHHHHHHhcCCC-------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC-----cc
Confidence 777888899999999999999999999985544 467889999999999999999999999987543 34
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004829 599 LFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLG 678 (728)
Q Consensus 599 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~ 678 (728)
..+.+|+++|.+....|++.-|..+|+-++.- +++..+++.+||.+-.+.|+.++|..++..|-.+
T Consensus 393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--------d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~------ 458 (478)
T KOG1129|consen 393 QAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--------DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV------ 458 (478)
T ss_pred hhhhhhhccceeEEeccchHHHHHHHHHHhcc--------CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh------
Confidence 45789999999999999999999999999987 8889999999999999999999999999998874
Q ss_pred CCChHHHHHHHHHHHH
Q 004829 679 TANPDVEDEKRRLAEL 694 (728)
Q Consensus 679 ~~~p~~~~~~~~La~~ 694 (728)
.|+..+..++|+.+
T Consensus 459 --~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 459 --MPDMAEVTTNLQFM 472 (478)
T ss_pred --CccccccccceeEE
Confidence 37777666666543
No 51
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.77 E-value=2.2e-14 Score=170.49 Aligned_cols=421 Identities=14% Similarity=0.044 Sum_probs=300.3
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcC
Q 004829 265 QVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLG 344 (728)
Q Consensus 265 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 344 (728)
....+...+..+...|++.+|+.++..+-.. ......+...+..+...|++..+..++..+-....
T Consensus 340 ~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~----------~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~---- 405 (903)
T PRK04841 340 LPELHRAAAEAWLAQGFPSEAIHHALAAGDA----------QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVL---- 405 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCH----------HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHH----
Confidence 3455666777888899999998877665321 12234566778888888998887776654311100
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 345 ETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP-ASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSM 423 (728)
Q Consensus 345 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 423 (728)
..+|. .....+.++...|++++|..++..+.......... .......+...++.++...|++++|..++++++...
T Consensus 406 ~~~~~---l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 482 (903)
T PRK04841 406 LENPR---LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL 482 (903)
T ss_pred hcCcc---hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 11233 33556777889999999999999987765433211 112234456668899999999999999999988642
Q ss_pred HhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 424 AANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALK 503 (728)
Q Consensus 424 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (728)
.. .+......+...+|.++...|++++|..++.+++...... +.......++..+|.++...|++++|..++++++.
T Consensus 483 ~~-~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~--g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 559 (903)
T PRK04841 483 PL-TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH--DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQ 559 (903)
T ss_pred CC-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 21 2222345567889999999999999999999999987765 22334456788999999999999999999999999
Q ss_pred HHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829 504 IYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLK 583 (728)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 583 (728)
+...... ...+.....+..+|.++...|++++|...+.+++.+.... + .......+..+|.++...|++++|...+.
T Consensus 560 ~~~~~~~-~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~ 636 (903)
T PRK04841 560 LIEEQHL-EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY-Q-PQQQLQCLAMLAKISLARGDLDNARRYLN 636 (903)
T ss_pred HHHHhcc-ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc-C-chHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9876431 1223344556778999999999999999999999987754 2 22345667789999999999999999999
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 004829 584 SAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAI 663 (728)
Q Consensus 584 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 663 (728)
++..+....... ..............+...|+.+.|..++....... .+ ........+..++.++...|++++|.
T Consensus 637 ~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~---~~-~~~~~~~~~~~~a~~~~~~g~~~~A~ 711 (903)
T PRK04841 637 RLENLLGNGRYH-SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE---FA-NNHFLQGQWRNIARAQILLGQFDEAE 711 (903)
T ss_pred HHHHHHhccccc-HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC---Cc-cchhHHHHHHHHHHHHHHcCCHHHHH
Confidence 998876553211 11111111112344556789999988876644310 00 01112233567899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhc
Q 004829 664 EILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSN 716 (728)
Q Consensus 664 ~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~ 716 (728)
.++++++...+.. + .......++..+|.++...|+.++|. ..+..+++..
T Consensus 712 ~~l~~al~~~~~~-g-~~~~~a~~~~~la~a~~~~G~~~~A~-~~L~~Al~la 761 (903)
T PRK04841 712 IILEELNENARSL-R-LMSDLNRNLILLNQLYWQQGRKSEAQ-RVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHh-C-chHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHh
Confidence 9999999986543 2 23466788899999999999999999 7777777654
No 52
>PLN03077 Protein ECB2; Provisional
Probab=99.77 E-value=3.1e-16 Score=183.80 Aligned_cols=397 Identities=15% Similarity=0.096 Sum_probs=267.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCc
Q 004829 224 FLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQD 303 (728)
Q Consensus 224 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 303 (728)
.+..+...|...| ++++|...|++.. . ++ ..+|..+...|.+.|++++|+.+|.++.... ..++
T Consensus 224 ~~n~Li~~y~k~g-~~~~A~~lf~~m~---------~--~d-~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g---~~Pd 287 (857)
T PLN03077 224 VVNALITMYVKCG-DVVSARLVFDRMP---------R--RD-CISWNAMISGYFENGECLEGLELFFTMRELS---VDPD 287 (857)
T ss_pred hHhHHHHHHhcCC-CHHHHHHHHhcCC---------C--CC-cchhHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCC
Confidence 3445556677776 8888888887652 1 22 3457888888999999999999998877542 1122
Q ss_pred hhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829 304 HALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRE 383 (728)
Q Consensus 304 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 383 (728)
..++..+...+...|+.+.|.+++..+.+.. -.....++..+...|.+.|++++|..+|++...
T Consensus 288 -----~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---- 351 (857)
T PLN03077 288 -----LMTITSVISACELLGDERLGREMHGYVVKTG-------FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---- 351 (857)
T ss_pred -----hhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-------CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----
Confidence 2246777777788888888888887776552 122346778888888899999999888887531
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829 384 NTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAF 463 (728)
Q Consensus 384 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 463 (728)
++ ..+|+.+...|.+.|++++|++.|.+.... +..|+. .++..+-..+...|++++|.+.+..+++.
T Consensus 352 ---~d----~~s~n~li~~~~~~g~~~~A~~lf~~M~~~----g~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~- 418 (857)
T PLN03077 352 ---KD----AVSWTAMISGYEKNGLPDKALETYALMEQD----NVSPDE-ITIASVLSACACLGDLDVGVKLHELAERK- 418 (857)
T ss_pred ---CC----eeeHHHHHHHHHhCCCHHHHHHHHHHHHHh----CCCCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHh-
Confidence 11 125788888888999999999888865432 223332 24444445677788888888888777654
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829 464 KSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNK 543 (728)
Q Consensus 464 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 543 (728)
.......++..|...|.+.|++++|.+.|++..+. ...+|..+...|...|++++|+.+|++
T Consensus 419 ------g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~------------d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 419 ------GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK------------DVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred ------CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC------------CeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 12233556777888888888888888887754210 123567777778888888888888887
Q ss_pred HHHHHhcCCCCCCcH-------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829 544 ALKIYGKTPGQQSTI-------------------------------AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS 592 (728)
Q Consensus 544 al~~~~~~~~~~~~~-------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 592 (728)
.+.. ...+.... ..++..+...|.+.|++++|...|+..
T Consensus 481 m~~~---~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------- 550 (857)
T PLN03077 481 MLLT---LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------- 550 (857)
T ss_pred HHhC---CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-------
Confidence 7531 11111100 012234557788888888887777654
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 593 GEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM 672 (728)
Q Consensus 593 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~ 672 (728)
. + ...+|+.+...|...|+.++|+.+|++..+. .-.|+.. ++..+-..|.+.|++++|..+|+...+.
T Consensus 551 -~--~--d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~------g~~Pd~~-T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 551 -E--K--DVVSWNILLTGYVAHGKGSMAVELFNRMVES------GVNPDEV-TFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred -C--C--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCcc-cHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 1 1 2357888888999999999999999887653 1133322 4556667788888999998888887743
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 004829 673 REEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTF 712 (728)
Q Consensus 673 ~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~l 712 (728)
. ...|+ ...+..+..+|.+.|++++|. ..++.+
T Consensus 619 ~-----gi~P~-~~~y~~lv~~l~r~G~~~eA~-~~~~~m 651 (857)
T PLN03077 619 Y-----SITPN-LKHYACVVDLLGRAGKLTEAY-NFINKM 651 (857)
T ss_pred h-----CCCCc-hHHHHHHHHHHHhCCCHHHHH-HHHHHC
Confidence 2 12343 356778888888888888888 666654
No 53
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.76 E-value=1.8e-15 Score=158.57 Aligned_cols=403 Identities=14% Similarity=0.097 Sum_probs=291.8
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHcCChhHHHHHHHHhh
Q 004829 215 GLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLE-QVMCLHVLAAIHCSLGQYNEAIPVLERSV 293 (728)
Q Consensus 215 ~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 293 (728)
.+..-.....|...+..+...| .-..|+...+..+.. .+.|. ....+..-..|+...+.+++++.+..+++
T Consensus 350 ~~~~~~~~e~w~~~als~saag-~~s~Av~ll~~~~~~-------~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai 421 (799)
T KOG4162|consen 350 LPFSFGEHERWYQLALSYSAAG-SDSKAVNLLRESLKK-------SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAI 421 (799)
T ss_pred hHhhhhhHHHHHHHHHHHHHhc-cchHHHHHHHhhccc-------ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHH
Confidence 3333344555666666666665 455566555555543 22232 23334444556667899999999999999
Q ss_pred hhhhhhcCCchhHhHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Q 004829 294 EIPVLEDGQDHALAKFAGCMQLGDTYAMLG-----------QIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHV 362 (728)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 362 (728)
.......+. ....++..+|.+|..+- ...++++.++++++. +|....+.++++.-|.
T Consensus 422 ~~~~~~~~~----l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~--------d~~dp~~if~lalq~A 489 (799)
T KOG4162|consen 422 SLLGGQRSH----LKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF--------DPTDPLVIFYLALQYA 489 (799)
T ss_pred HHhhhhhhh----hhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc--------CCCCchHHHHHHHHHH
Confidence 865322222 23345888888886542 345667777777776 5666688999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004829 363 QSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDA 442 (728)
Q Consensus 363 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 442 (728)
.+++.+.|..+.++++++.+... +.+|..++.++...+++.+|+.....++..+.. ..........+
T Consensus 490 ~~R~l~sAl~~~~eaL~l~~~~~-------~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~------N~~l~~~~~~i 556 (799)
T KOG4162|consen 490 EQRQLTSALDYAREALALNRGDS-------AKAWHLLALVLSAQKRLKEALDVVDAALEEFGD------NHVLMDGKIHI 556 (799)
T ss_pred HHHhHHHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh------hhhhchhhhhh
Confidence 99999999999999998854432 457999999999999999999999988765422 22223333445
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC------------
Q 004829 443 YLSLARFDEAIFSYHKALTAFKSAKGENH-PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN------------ 509 (728)
Q Consensus 443 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------ 509 (728)
-...++.++|+..+...+.+++..++-.. -.........+.+.....+..+|...+.++..+.....
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 55689999999999999999885432110 01122223334444555667777777776665543211
Q ss_pred ---CCCC--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829 510 ---HGIP--SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKS 584 (728)
Q Consensus 510 ---~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 584 (728)
++.+ +......|...+.++...+..++|..++.++..+.+.. +.+|+..|.++...|++.+|...|..
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~-------~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS-------ASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh-------HHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 1111 22234567778888999999999999999998876444 78899999999999999999999999
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004829 585 AISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAAD--LFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDA 662 (728)
Q Consensus 585 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 662 (728)
|+.+ +|....+...+|.++.+.|+..-|.. ++..++++ +|...++|+.||.++.++|+.++|
T Consensus 710 Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--------dp~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 710 ALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--------DPLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHccchHHH
Confidence 9988 34445788999999999998888887 99999999 899999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 004829 663 IEILEYVVGMR 673 (728)
Q Consensus 663 ~~~~~~al~~~ 673 (728)
.++|..|+++.
T Consensus 774 aecf~aa~qLe 784 (799)
T KOG4162|consen 774 AECFQAALQLE 784 (799)
T ss_pred HHHHHHHHhhc
Confidence 99999999975
No 54
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.2e-14 Score=141.49 Aligned_cols=290 Identities=13% Similarity=0.112 Sum_probs=236.8
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 004829 347 DHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAAN 426 (728)
Q Consensus 347 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 426 (728)
-+.....+..+|.+++..|++++|+..|+++.-+.+.. ...+-..|.++...|++++-..+....+..
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~--------i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~---- 295 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDN--------VEAMDLYAVLLGQEGGCEQDSALMDYLFAK---- 295 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhh--------hhhHHHHHHHHHhccCHhhHHHHHHHHHhh----
Confidence 46777889999999999999999999999998766543 234666788888999998877665554433
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc
Q 004829 427 GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYG 506 (728)
Q Consensus 427 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 506 (728)
....+.-|+--+...+...++..|+.+-++++.. ++....++...|.++...|+.++|.-.|+.|..+
T Consensus 296 --~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-- 363 (564)
T KOG1174|consen 296 --VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQML-- 363 (564)
T ss_pred --hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhc--
Confidence 1223344566677888999999999999999998 8888899999999999999999999999999988
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH-HHHH-HcCCHHHHHHHHHH
Q 004829 507 KPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMG-VMYY-MTGNYSDSYNTLKS 584 (728)
Q Consensus 507 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~ 584 (728)
.|....+|..|-.+|...|++.+|......++..++.. +.++..+| .+++ .----++|.+++++
T Consensus 364 -------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s-------A~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 364 -------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS-------ARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred -------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc-------hhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 46678899999999999999999999999999988776 45555665 3333 33446789999999
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004829 585 AISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE 664 (728)
Q Consensus 585 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 664 (728)
++.+ .|.+..+...+|.++...|.++.++.++++.+.. .++. ..+..||.++...+.+++|+.
T Consensus 430 ~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--------~~D~-~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 430 SLKI--------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--------FPDV-NLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred hhcc--------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--------cccc-HHHHHHHHHHHHhhhHHHHHH
Confidence 9987 5667788889999999999999999999999998 4443 367889999999999999999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC
Q 004829 665 ILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAG 699 (728)
Q Consensus 665 ~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g 699 (728)
+|..|+.+ +|....++..|-.+-....
T Consensus 493 ~y~~ALr~--------dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 493 YYYKALRQ--------DPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHHHhc--------CccchHHHHHHHHHHhccC
Confidence 99999984 5777777766655544433
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.75 E-value=3.4e-14 Score=146.21 Aligned_cols=439 Identities=16% Similarity=0.124 Sum_probs=249.8
Q ss_pred ccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 004829 213 AAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERS 292 (728)
Q Consensus 213 ~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 292 (728)
......|+.++.+...|..+...| +-++|..+...++.. ++....||+.+|.++....+|++|+.+|+.|
T Consensus 32 ~iL~k~~eHgeslAmkGL~L~~lg-~~~ea~~~vr~glr~---------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nA 101 (700)
T KOG1156|consen 32 QILKKFPEHGESLAMKGLTLNCLG-KKEEAYELVRLGLRN---------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNA 101 (700)
T ss_pred HHHHhCCccchhHHhccchhhccc-chHHHHHHHHHHhcc---------CcccchhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 334456666666666666666665 566666666666542 2334556666666666666666666666666
Q ss_pred hhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Q 004829 293 VEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEK 372 (728)
Q Consensus 293 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 372 (728)
+.+. +++. .++..++....++++++-......+.+++ .|.....|..+|..+...|++..|..
T Consensus 102 l~~~-----~dN~----qilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 102 LKIE-----KDNL----QILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HhcC-----CCcH----HHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6553 2222 23666666666666666666666666655 45555666666666666666666666
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHH
Q 004829 373 ICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEA 452 (728)
Q Consensus 373 ~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 452 (728)
.++...................+......+....|.+++|++.+..-- +...+........|.++..++++++|
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e------~~i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE------KQIVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh------hHHHHHHHHhhhHHHHHHHHhhHHhH
Confidence 666665554433333444445555555666666666666666554321 11223333445566777777777777
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHH-----------HHH
Q 004829 453 IFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIA-----------SGL 521 (728)
Q Consensus 453 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----------~~~ 521 (728)
...|...+.. .|+....+..+-.++. .+....+..........+..+....+... ..+
T Consensus 239 ~~~y~~Ll~r--------nPdn~~Yy~~l~~~lg---k~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~v 307 (700)
T KOG1156|consen 239 VKVYRRLLER--------NPDNLDYYEGLEKALG---KIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIV 307 (700)
T ss_pred HHHHHHHHhh--------CchhHHHHHHHHHHHH---HHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHH
Confidence 7777777666 6666666666655554 22222222222222222211111111000 000
Q ss_pred HHHHHHHHHc-------------CCHHHHHHHHHHHHHHHhcCC--------------CCCCcHHHHHHHHHHHHHHcCC
Q 004829 522 IDIAAIYQSM-------------NELEQAVKLLNKALKIYGKTP--------------GQQSTIAGIEAQMGVMYYMTGN 574 (728)
Q Consensus 522 ~~la~~~~~~-------------g~~~~A~~~~~~al~~~~~~~--------------~~~~~~~~~~~~la~~~~~~g~ 574 (728)
...-.-.... .+.... ..+++.+..+.... ..+..+.+.++.++.-+...|+
T Consensus 308 dkyL~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 308 DKYLRPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred HHHHHHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence 0000000000 011111 12222222222111 1233567778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004829 575 YSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYD 654 (728)
Q Consensus 575 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~ 654 (728)
++.|..+++.|+.. .|.....+...|+++...|++++|...+.++.++ +....-+-..-|....
T Consensus 387 ~~~A~~yId~AIdH--------TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--------D~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 387 YEVALEYIDLAIDH--------TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--------DTADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--------cchhHHHHHHHHHHHH
Confidence 99999999999875 6667888889999999999999999999999887 3222223335777888
Q ss_pred HcCChHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 004829 655 AMGRIDDAIEILEYVVGMREEKLGT-ANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFL 713 (728)
Q Consensus 655 ~~g~~~~A~~~~~~al~~~~~~~~~-~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll 713 (728)
+.++.++|.+...+.-.-.....+. ..-...+....-|..|.++|++..|. +.+..+-
T Consensus 451 rAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~AL-Kkfh~i~ 509 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLAL-KKFHEIE 509 (700)
T ss_pred HccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHH-HHHhhHH
Confidence 8999999988776554321111110 11122333334588999999998888 5444443
No 56
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.73 E-value=1.1e-14 Score=139.29 Aligned_cols=347 Identities=15% Similarity=0.121 Sum_probs=276.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829 312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE 391 (728)
Q Consensus 312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 391 (728)
.+.-|.-++...++++|+..+.+.+...... ......+-.+..+...+|.|.+++.+--..++.+.+..+ ...
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~-----~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~d--s~~ 81 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDL-----MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELED--SDF 81 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHH-----HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 5666777888899999999999998875442 344567777888899999999998887777766665543 233
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829 392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH 471 (728)
Q Consensus 392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 471 (728)
...++.+++..+....++.+++.+..-.+.+..... ...-..+...+|..+..++.++++++.|+.|+.+.... .|.
T Consensus 82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~-~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--~D~ 158 (518)
T KOG1941|consen 82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRA-GQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--DDA 158 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCc-ccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--CCc
Confidence 455688999999999999999988776554321111 01223566779999999999999999999999997765 344
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC-CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN-HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 472 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
.....++..||.+|....++++|+-+..+|.++..... .+.+......+++.++..+..+|..-.|.++.+++.++.-.
T Consensus 159 ~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~ 238 (518)
T KOG1941|consen 159 MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ 238 (518)
T ss_pred eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 45567899999999999999999999999999988765 23334456778899999999999999999999999999888
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHH-----HHHHHH
Q 004829 551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINE-----AADLFE 625 (728)
Q Consensus 551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~~~ 625 (728)
. |+....+.....+|.+|...|+.+.|..-|++|......+++... ...++...|.++....-..+ |+++-.
T Consensus 239 ~-Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmg--qv~al~g~Akc~~~~r~~~k~~~Crale~n~ 315 (518)
T KOG1941|consen 239 H-GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMG--QVEALDGAAKCLETLRLQNKICNCRALEFNT 315 (518)
T ss_pred h-CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHH--HHHHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 7 888888889999999999999999999999999999888887643 35677778887776655554 999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 626 EARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 626 ~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
+++++...+.. .-.+......++.+|..+|.-++=...+.++-+..
T Consensus 316 r~levA~~IG~--K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~ 361 (518)
T KOG1941|consen 316 RLLEVASSIGA--KLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV 361 (518)
T ss_pred HHHHHHHHhhh--hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 99999887754 33566788899999999998888777777765543
No 57
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=1.9e-14 Score=147.60 Aligned_cols=367 Identities=16% Similarity=0.070 Sum_probs=210.9
Q ss_pred CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhh
Q 004829 219 PALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVL 298 (728)
Q Consensus 219 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 298 (728)
.+.-..++.-+..+...+ -++-|+..|..+++.+.. .-..|...+..--..|..++-..+|++++...
T Consensus 513 ed~~~tw~~da~~~~k~~-~~~carAVya~alqvfp~---------k~slWlra~~~ek~hgt~Esl~Allqkav~~~-- 580 (913)
T KOG0495|consen 513 EDRKSTWLDDAQSCEKRP-AIECARAVYAHALQVFPC---------KKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-- 580 (913)
T ss_pred chhHhHHhhhHHHHHhcc-hHHHHHHHHHHHHhhccc---------hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--
Confidence 334444555555555553 555555555555554421 12233344444444555555555666655443
Q ss_pred hcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004829 299 EDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMAL 378 (728)
Q Consensus 299 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 378 (728)
+..+. .|+..+..+...|+...|...+.++++. .|+....|..--.+.+...+++.|..+|.++.
T Consensus 581 ---pkae~----lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 581 ---PKAEI----LWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred ---Ccchh----HHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 22211 2555555555566666666666666655 45555555555555555666666666666655
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004829 379 DIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHK 458 (728)
Q Consensus 379 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 458 (728)
...+. ..+|+.-+.+...+++.++|+.+++.+++. .|.....|..+|+++..+++.+.|...|..
T Consensus 646 ~~sgT---------eRv~mKs~~~er~ld~~eeA~rllEe~lk~------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~ 710 (913)
T KOG0495|consen 646 SISGT---------ERVWMKSANLERYLDNVEEALRLLEEALKS------FPDFHKLWLMLGQIEEQMENIEMAREAYLQ 710 (913)
T ss_pred ccCCc---------chhhHHHhHHHHHhhhHHHHHHHHHHHHHh------CCchHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 42211 223555555555666666666666666544 255555666666666666666666666666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 004829 459 ALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAV 538 (728)
Q Consensus 459 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 538 (728)
.+.. .|.....+..|+.+-...|+.-.|...++++.-. .|.....|.....+-.+.|..++|.
T Consensus 711 G~k~--------cP~~ipLWllLakleEk~~~~~rAR~ildrarlk---------NPk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 711 GTKK--------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK---------NPKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred cccc--------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc---------CCCcchhHHHHHHHHHHcCCHHHHH
Confidence 5555 5555555666666666666666666666665433 2334445555555556666666666
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHH
Q 004829 539 KLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTIN 618 (728)
Q Consensus 539 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 618 (728)
....+|++-++.. | ..+..-..+.-.-++-..+++.++++ . ....++...|..+....+++
T Consensus 774 ~lmakALQecp~s-g------~LWaEaI~le~~~~rkTks~DALkkc-------e-----~dphVllaia~lfw~e~k~~ 834 (913)
T KOG0495|consen 774 LLMAKALQECPSS-G------LLWAEAIWLEPRPQRKTKSIDALKKC-------E-----HDPHVLLAIAKLFWSEKKIE 834 (913)
T ss_pred HHHHHHHHhCCcc-c------hhHHHHHHhccCcccchHHHHHHHhc-------c-----CCchhHHHHHHHHHHHHHHH
Confidence 6666666655544 1 11111111111112222222222222 1 11357788899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 619 EAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG 671 (728)
Q Consensus 619 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 671 (728)
+|.+.|.+++++ +|+..+++..+-..+...|.-++-.+.|.++..
T Consensus 835 kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 835 KAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 999999999999 888888888888999999988888888888776
No 58
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.72 E-value=5.8e-13 Score=137.31 Aligned_cols=401 Identities=11% Similarity=0.080 Sum_probs=251.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCc
Q 004829 224 FLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQD 303 (728)
Q Consensus 224 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 303 (728)
.|..+|..+... ++|.+|+.+|..|+.+ . ++....|..++....++++|+-....-.+.+++. +.
T Consensus 77 CwHv~gl~~R~d-K~Y~eaiKcy~nAl~~------~---~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-----~~ 141 (700)
T KOG1156|consen 77 CWHVLGLLQRSD-KKYDEAIKCYRNALKI------E---KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-----PS 141 (700)
T ss_pred hHHHHHHHHhhh-hhHHHHHHHHHHHHhc------C---CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hh
Confidence 355566666666 5899999999999986 2 4456678999999999999999998888888765 21
Q ss_pred hhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829 304 HALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRE 383 (728)
Q Consensus 304 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 383 (728)
.-..|...+..+...|++..|....+...+.... .|.....-......|..+-..+... ++.+++....
T Consensus 142 ----~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~-----~~s~~~~e~se~~Ly~n~i~~E~g~--~q~ale~L~~ 210 (700)
T KOG1156|consen 142 ----QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT-----SPSKEDYEHSELLLYQNQILIEAGS--LQKALEHLLD 210 (700)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----CCCHHHHHHHHHHHHHHHHHHHccc--HHHHHHHHHh
Confidence 2335899999999999999999998887766431 2333333334444444433333332 5666666554
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829 384 NTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAF 463 (728)
Q Consensus 384 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 463 (728)
... ............+.++..++++++|...|...+.. .|+....+..+-.++. .+....+....++...
T Consensus 211 ~e~-~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r------nPdn~~Yy~~l~~~lg---k~~d~~~~lk~ly~~l 280 (700)
T KOG1156|consen 211 NEK-QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER------NPDNLDYYEGLEKALG---KIKDMLEALKALYAIL 280 (700)
T ss_pred hhh-HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh------CchhHHHHHHHHHHHH---HHhhhHHHHHHHHHHH
Confidence 432 22233344566789999999999999999887654 4666666666555554 2223333333333333
Q ss_pred HHhcCCC-CHHHHHHHH--------HHHHH---HHHc-------------CChHHHHHHHHHHHHHHcCCCCCC------
Q 004829 464 KSAKGEN-HPAVASVFV--------RLADL---YHKI-------------GKLRDSKSYCENALKIYGKPNHGI------ 512 (728)
Q Consensus 464 ~~~~~~~-~~~~~~~~~--------~la~~---~~~~-------------g~~~~A~~~~~~al~~~~~~~~~~------ 512 (728)
.+.+... .|......+ .+..+ .... .+..+. .++++.+..+.....+.
T Consensus 281 s~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 281 SEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred hhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcc
Confidence 3222110 110000000 00000 0001 111111 14444333332222121
Q ss_pred ------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829 513 ------PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAI 586 (728)
Q Consensus 513 ------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 586 (728)
.+....+.++.++.-+...|+++.|..++..|+ +..+++...|..-|.++...|++++|...+.++.
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI-------dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~ 432 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI-------DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ 432 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh-------ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 344567788889999999999999999999988 4556668888899999999999999999999998
Q ss_pred HHHHHhCCCCcHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHcCChHHHHH
Q 004829 587 SKFRTSGEKKSALFGIALN-QMGLACVQRYTINEAADLFEEARTILEKEYGP-YHHDTLGVYSNLAGTYDAMGRIDDAIE 664 (728)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~La~~~~~~g~~~~A~~ 664 (728)
++ +.. ..+++ .-|...++.++.++|.+.....-+--....+. ...+..+....-|..|.++|++..|+.
T Consensus 433 el--------D~a-DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALK 503 (700)
T KOG1156|consen 433 EL--------DTA-DRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALK 503 (700)
T ss_pred hc--------cch-hHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHH
Confidence 76 111 12333 56777788899999988776543321100000 111222223344889999999999999
Q ss_pred HHHHHHHHHHHHc
Q 004829 665 ILEYVVGMREEKL 677 (728)
Q Consensus 665 ~~~~al~~~~~~~ 677 (728)
-|..+-.++.+..
T Consensus 504 kfh~i~k~~~~~~ 516 (700)
T KOG1156|consen 504 KFHEIEKHYKTWS 516 (700)
T ss_pred HHhhHHHHHHHHh
Confidence 8888877776653
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.72 E-value=5.3e-15 Score=163.43 Aligned_cols=253 Identities=16% Similarity=0.050 Sum_probs=202.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 004829 407 GDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLA---------RFDEAIFSYHKALTAFKSAKGENHPAVASV 477 (728)
Q Consensus 407 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 477 (728)
+.+++|+.+|++++.+ +|..+.++..+|.+|...+ ++++|+..+++++++ .|....+
T Consensus 275 ~~~~~A~~~~~~Al~l------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~~a 340 (553)
T PRK12370 275 YSLQQALKLLTQCVNM------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNPQA 340 (553)
T ss_pred HHHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCHHH
Confidence 4578999999999865 6777888999998877543 489999999999998 8888999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCc
Q 004829 478 FVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQST 557 (728)
Q Consensus 478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 557 (728)
+..+|.++...|++++|+.+|++++++ .|..+.++..+|.++...|++++|+..+++++++.+...
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l---------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~----- 406 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLL---------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA----- 406 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-----
Confidence 999999999999999999999999999 344567889999999999999999999999999876542
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004829 558 IAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGP 637 (728)
Q Consensus 558 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 637 (728)
..+..++.+++..|++++|+..+++++... ++....++..+|.++..+|++++|...+.++...
T Consensus 407 --~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~------- 470 (553)
T PRK12370 407 --AAGITKLWITYYHTGIDDAIRLGDELRSQH-------LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ------- 470 (553)
T ss_pred --hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-------
Confidence 233345666778999999999999987651 1223467888999999999999999999887665
Q ss_pred CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhc
Q 004829 638 YHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSN 716 (728)
Q Consensus 638 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~ 716 (728)
.|....+...++..|...| ++|...+++.++..... +.++ ..++.+|.-.|+.+.+. .. +.+.+.+
T Consensus 471 -~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~--~~~~------~~~~~~~~~~g~~~~~~-~~-~~~~~~~ 536 (553)
T PRK12370 471 -EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI--DNNP------GLLPLVLVAHGEAIAEK-MW-NKFKNED 536 (553)
T ss_pred -cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh--hcCc------hHHHHHHHHHhhhHHHH-HH-HHhhccc
Confidence 6677778888999999888 48888888877654322 1122 22778888888888887 44 5554443
No 60
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=3.4e-17 Score=165.64 Aligned_cols=266 Identities=21% Similarity=0.181 Sum_probs=114.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHH
Q 004829 271 VLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRV 350 (728)
Q Consensus 271 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 350 (728)
.+|.+++..|++++|++++.+.+... .++.. ...|..+|.+....++++.|+..|++++.. ++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~---~~~~~----~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~ 77 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKI---APPDD----PEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKAN 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc---ccccc----cccccccccccccccccccccccccccccc--------cccc
Confidence 56999999999999999997655432 01222 234888999999999999999999999887 4455
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCh
Q 004829 351 GETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHEL 430 (728)
Q Consensus 351 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 430 (728)
...+..++.+ ...+++++|..++.++.+..+.. ..+..+..++...++++++...+.++... ...+
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~---------~~l~~~l~~~~~~~~~~~~~~~l~~~~~~----~~~~ 143 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP---------RYLLSALQLYYRLGDYDEAEELLEKLEEL----PAAP 143 (280)
T ss_dssp --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-----T---
T ss_pred cccccccccc-ccccccccccccccccccccccc---------chhhHHHHHHHHHhHHHHHHHHHHHHHhc----cCCC
Confidence 5566677776 68999999999998887654321 23555667889999999999999886532 2234
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCC
Q 004829 431 DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH 510 (728)
Q Consensus 431 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 510 (728)
.....+..+|.++...|++++|+..|+++++. .|....+...++.++...|+++++...+........
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~---- 211 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP---- 211 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc----
Confidence 56778999999999999999999999999999 888888999999999999999999888888877742
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 511 GIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKF 589 (728)
Q Consensus 511 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 589 (728)
.....+..+|.+|...|++++|+.+|++++...+.. ..++..+|.++...|++++|..++++++...
T Consensus 212 -----~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-------~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 212 -----DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD-------PLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp -----TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--------HHHHHHHHHHHT-------------------
T ss_pred -----CHHHHHHHHHHHhccccccccccccccccccccccc-------ccccccccccccccccccccccccccccccc
Confidence 223456788999999999999999999999876655 5677899999999999999999999988653
No 61
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.72 E-value=2.5e-14 Score=136.83 Aligned_cols=345 Identities=15% Similarity=0.120 Sum_probs=276.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCCh
Q 004829 269 LHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDH 348 (728)
Q Consensus 269 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 348 (728)
...-|.-++...++++|+..+.+.+... ++....+..+-.+..+...+|.|++++.+--..++.+... ++..
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l------~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~ 80 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKL------SDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSD 80 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHH------HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 3445777788899999999999988764 2233456678888999999999999998887777776654 3345
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 004829 349 RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGH 428 (728)
Q Consensus 349 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 428 (728)
...+++.+++..+....++.+++.+....+.+-..... ... ...+..+|..+..++.|++++++|+.|+.++...++
T Consensus 81 ~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~-~~~--gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D 157 (518)
T KOG1941|consen 81 FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG-QLG--GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD 157 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc-ccc--chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence 66789999999999999999999988877765332221 111 234667999999999999999999999999999988
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc
Q 004829 429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGEN--HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYG 506 (728)
Q Consensus 429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 506 (728)
......++..||.+|....++++|+-+..+|+++.....-++ ......+++.++..+..+|+.-.|.++++++.++.-
T Consensus 158 ~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal 237 (518)
T KOG1941|consen 158 AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL 237 (518)
T ss_pred ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999987764222 233566788999999999999999999999999987
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHH-----HHHH
Q 004829 507 KPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSD-----SYNT 581 (728)
Q Consensus 507 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~ 581 (728)
..+ +.+..+..+..+|.+|...|+.+.|..-|+.|..+.... ++.-....++...+.++....-..+ |++.
T Consensus 238 ~~G---dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~-gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~ 313 (518)
T KOG1941|consen 238 QHG---DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL-GDRMGQVEALDGAAKCLETLRLQNKICNCRALEF 313 (518)
T ss_pred HhC---ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Confidence 754 567788899999999999999999999999999988776 6555555666666776655444444 9999
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 582 LKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 582 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
-.+++++...++.+. ..-.....++.+|..+|.-++-...+..+-+.
T Consensus 314 n~r~levA~~IG~K~--~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 314 NTRLLEVASSIGAKL--SVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 999999999888763 34578889999999998877777776665544
No 62
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=8.9e-14 Score=142.70 Aligned_cols=426 Identities=14% Similarity=0.042 Sum_probs=299.0
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhh
Q 004829 218 NPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV 297 (728)
Q Consensus 218 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 297 (728)
-|.....+...+..--..| +.+....+..+++..+..-+-. -....|..-|..+-..|-.-.+......++.+..
T Consensus 436 iptd~~IWitaa~LEE~ng-n~~mv~kii~rgl~~L~~ngv~----i~rdqWl~eAe~~e~agsv~TcQAIi~avigigv 510 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANG-NVDMVEKIIDRGLSELQANGVE----INRDQWLKEAEACEDAGSVITCQAIIRAVIGIGV 510 (913)
T ss_pred CCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhccee----ecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcc
Confidence 4566677777888888887 8999999999998887664321 1233455667777777777777777777776643
Q ss_pred hhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829 298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMA 377 (728)
Q Consensus 298 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 377 (728)
...+ ....|+.-+..+...+.++-|...|..+++. .|..-..|...+..-...|..+.-..+++++
T Consensus 511 Eeed------~~~tw~~da~~~~k~~~~~carAVya~alqv--------fp~k~slWlra~~~ek~hgt~Esl~Allqka 576 (913)
T KOG0495|consen 511 EEED------RKSTWLDDAQSCEKRPAIECARAVYAHALQV--------FPCKKSLWLRAAMFEKSHGTRESLEALLQKA 576 (913)
T ss_pred ccch------hHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--------ccchhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 2211 2334778888888888888888888888887 5566667777777777777788888888888
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004829 378 LDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYH 457 (728)
Q Consensus 378 l~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 457 (728)
+...|+... .|...+..++..|+...|...+.++++. .|..-.+|..--.+.....+++.|..+|.
T Consensus 577 v~~~pkae~--------lwlM~ake~w~agdv~~ar~il~~af~~------~pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 577 VEQCPKAEI--------LWLMYAKEKWKAGDVPAARVILDQAFEA------NPNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred HHhCCcchh--------HHHHHHHHHHhcCCcHHHHHHHHHHHHh------CCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 877765431 3556667777778888888887777654 34444556666666777777888888877
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Q 004829 458 KALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQA 537 (728)
Q Consensus 458 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 537 (728)
++... .....+++.-+.+...+++.++|+.+++++++.+ |.....|..+|.++..+++.+.|
T Consensus 643 kar~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f---------p~f~Kl~lmlGQi~e~~~~ie~a 704 (913)
T KOG0495|consen 643 KARSI---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSF---------PDFHKLWLMLGQIEEQMENIEMA 704 (913)
T ss_pred HHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC---------CchHHHHHHHhHHHHHHHHHHHH
Confidence 77653 2345667777777777788888888888888774 34566777788888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCH
Q 004829 538 VKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTI 617 (728)
Q Consensus 538 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 617 (728)
...|...++.++.. .-.+..|+.+-.+.|+.-.|...++++.-. +|.....|...-+.-++.|+.
T Consensus 705 R~aY~~G~k~cP~~-------ipLWllLakleEk~~~~~rAR~ildrarlk--------NPk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 705 REAYLQGTKKCPNS-------IPLWLLLAKLEEKDGQLVRARSILDRARLK--------NPKNALLWLESIRMELRAGNK 769 (913)
T ss_pred HHHHHhccccCCCC-------chHHHHHHHHHHHhcchhhHHHHHHHHHhc--------CCCcchhHHHHHHHHHHcCCH
Confidence 88887777766655 235566777777777778887777777543 233345555555666677777
Q ss_pred HHHHHHHHHHHHHHHHhc--------CCC--------------ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004829 618 NEAADLFEEARTILEKEY--------GPY--------------HHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREE 675 (728)
Q Consensus 618 ~~A~~~~~~al~~~~~~~--------~~~--------------~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~ 675 (728)
+.|..+..+|++-+.... -.. -.....++..+|.++....++++|.++|.+++.+
T Consensus 770 ~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--- 846 (913)
T KOG0495|consen 770 EQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--- 846 (913)
T ss_pred HHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 777777777765422110 000 0011236778999999999999999999999995
Q ss_pred HcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829 676 KLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ 718 (728)
Q Consensus 676 ~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~ 718 (728)
.|+..+++..+-..+...|.-++-. ..+.......|+
T Consensus 847 -----d~d~GD~wa~fykfel~hG~eed~k-ev~~~c~~~EP~ 883 (913)
T KOG0495|consen 847 -----DPDNGDAWAWFYKFELRHGTEEDQK-EVLKKCETAEPT 883 (913)
T ss_pred -----CCccchHHHHHHHHHHHhCCHHHHH-HHHHHHhccCCC
Confidence 4888888888888999999888887 777776665554
No 63
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=5.3e-17 Score=164.25 Aligned_cols=268 Identities=20% Similarity=0.179 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829 312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE 391 (728)
Q Consensus 312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 391 (728)
.+.+|.+++..|++++|++++.+.+.... +|.....|..+|.+....++++.|+..|++++...+...
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~------~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~------ 78 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIA------PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP------ 78 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc------
Confidence 34679999999999999999977655521 356667888899999999999999999999997755432
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829 392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH 471 (728)
Q Consensus 392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 471 (728)
..+..++.+ ...+++++|+.++.++.+.. .....+..+..++...++++++...++++... ...
T Consensus 79 --~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~-------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~~ 142 (280)
T PF13429_consen 79 --QDYERLIQL-LQDGDPEEALKLAEKAYERD-------GDPRYLLSALQLYYRLGDYDEAEELLEKLEEL------PAA 142 (280)
T ss_dssp -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-------T--
T ss_pred --ccccccccc-cccccccccccccccccccc-------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhc------cCC
Confidence 235556666 68999999999988765431 12344556777889999999999999997753 224
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829 472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 472 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 551 (728)
+.....+..+|.++...|++++|+.+|+++++. .|....+...++.++...|+++++...+.......+..
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALEL---------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD 213 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH
Confidence 566788999999999999999999999999999 34456678889999999999999988888887776544
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 552 PGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTIL 631 (728)
Q Consensus 552 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 631 (728)
+ .++..+|.+|..+|++++|+.+|++++.. .+....++..+|.++...|+.++|..++++++...
T Consensus 214 ~-------~~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 214 P-------DLWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp C-------CHCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT-------------------
T ss_pred H-------HHHHHHHHHhccccccccccccccccccc--------ccccccccccccccccccccccccccccccccccc
Confidence 2 24467899999999999999999999987 44456788999999999999999999999988753
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.71 E-value=2.1e-15 Score=136.44 Aligned_cols=211 Identities=16% Similarity=0.116 Sum_probs=185.1
Q ss_pred CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
......+...||.-|+..|++..|...+++|+++ +|....+|..++.+|...|+.+.|.+.|++|+.+.++
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~---------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~ 101 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH---------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN 101 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC
Confidence 4456778899999999999999999999999999 5667889999999999999999999999999999877
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
. ..++++.|..++.+|++++|...|++|+.. +.-...+..+.++|.|.++.|+++.|.++|++++++
T Consensus 102 ~-------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 102 N-------GDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred c-------cchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 6 568899999999999999999999999864 223345678999999999999999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 004829 631 LEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLV 710 (728)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~ 710 (728)
+|+.......++..+...|++-.|..++++..... +-.++.+.....+-...|+.+.|- ++-.
T Consensus 169 --------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~--------~~~A~sL~L~iriak~~gd~~~a~-~Y~~ 231 (250)
T COG3063 169 --------DPQFPPALLELARLHYKAGDYAPARLYLERYQQRG--------GAQAESLLLGIRIAKRLGDRAAAQ-RYQA 231 (250)
T ss_pred --------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc--------cccHHHHHHHHHHHHHhccHHHHH-HHHH
Confidence 88888899999999999999999999999887632 355667777778888999999988 8888
Q ss_pred HHHhhccccc
Q 004829 711 TFLDSNSQNL 720 (728)
Q Consensus 711 ~ll~~~~~~~ 720 (728)
.|....|...
T Consensus 232 qL~r~fP~s~ 241 (250)
T COG3063 232 QLQRLFPYSE 241 (250)
T ss_pred HHHHhCCCcH
Confidence 8887777654
No 65
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=2e-14 Score=153.09 Aligned_cols=309 Identities=11% Similarity=-0.034 Sum_probs=228.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829 312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE 391 (728)
Q Consensus 312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 391 (728)
....|......|+++.|.+.+.++.+. .|.....+...|.++...|+++.|..++.++.+..+...
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~------ 152 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN------ 152 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc------
Confidence 456677888899999999999888776 455556677889999999999999999999986554332
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829 392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH 471 (728)
Q Consensus 392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 471 (728)
..+....+.++...|++++|+..++..... .|....++..++.++...|++++|...+.+.++.. ...
T Consensus 153 -l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-----~~~ 220 (409)
T TIGR00540 153 -ILVEIARTRILLAQNELHAARHGVDKLLEM------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-----LFD 220 (409)
T ss_pred -hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-----CCC
Confidence 012344589999999999999999887754 46666789999999999999999999998887651 112
Q ss_pred HHHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 472 PAVA-SVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 472 ~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
+... ........-+...+..+++...+..+...... ..+.....+..++..+...|++++|...++++++..++
T Consensus 221 ~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~-----~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd 295 (409)
T TIGR00540 221 DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPR-----HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD 295 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCH-----HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Confidence 3222 22222222223444555555666666655311 11235678888999999999999999999999998765
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHH--HHHHHHHHHHHHcCCHHHHHHHHHH--
Q 004829 551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFG--IALNQMGLACVQRYTINEAADLFEE-- 626 (728)
Q Consensus 551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~-- 626 (728)
..... ............++...+++.++++++. .+..+ ..+..+|.+++..|++++|.++|++
T Consensus 296 ~~~~~-----~~~l~~~~~l~~~~~~~~~~~~e~~lk~--------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~ 362 (409)
T TIGR00540 296 DRAIS-----LPLCLPIPRLKPEDNEKLEKLIEKQAKN--------VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA 362 (409)
T ss_pred cccch-----hHHHHHhhhcCCCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH
Confidence 42110 0112333344567888888888888865 23334 6788999999999999999999994
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 627 ARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 627 al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
+++. +|+... +..+|.++.+.|+.++|.++|++++...
T Consensus 363 a~~~--------~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 363 ACKE--------QLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred Hhhc--------CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 6655 666554 5599999999999999999999998754
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.71 E-value=3.8e-15 Score=164.58 Aligned_cols=262 Identities=11% Similarity=-0.040 Sum_probs=202.3
Q ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---------CChhHHHHHHHHhh
Q 004829 225 LLKQTREMISSG--ENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSL---------GQYNEAIPVLERSV 293 (728)
Q Consensus 225 l~~~a~~~~~~g--~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al 293 (728)
++..|...+... +++++|+.+|++|+.+ +|..+.++..+|.+|... +++++|+..+++++
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l---------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNM---------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhc---------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 444454444332 3578999999999875 255577788888887644 34789999999999
Q ss_pred hhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Q 004829 294 EIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKI 373 (728)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 373 (728)
++. ++++. ++..+|.++...|++++|+.+|++++++ +|....+++.+|.++...|++++|+..
T Consensus 332 ~ld-----P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 332 ELD-----HNNPQ----ALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred hcC-----CCCHH----HHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 885 55544 4889999999999999999999999999 788889999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHH
Q 004829 374 CQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAI 453 (728)
Q Consensus 374 ~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 453 (728)
+++++++.|.... .+..++.+++..|++++|+..+++++... .|.....+..+|.++..+|++++|.
T Consensus 395 ~~~Al~l~P~~~~--------~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-----~p~~~~~~~~la~~l~~~G~~~eA~ 461 (553)
T PRK12370 395 INECLKLDPTRAA--------AGITKLWITYYHTGIDDAIRLGDELRSQH-----LQDNPILLSMQVMFLSLKGKHELAR 461 (553)
T ss_pred HHHHHhcCCCChh--------hHHHHHHHHHhccCHHHHHHHHHHHHHhc-----cccCHHHHHHHHHHHHhCCCHHHHH
Confidence 9999998765421 23445566777999999999998876431 2455667889999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCC
Q 004829 454 FSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNE 533 (728)
Q Consensus 454 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 533 (728)
..+.+.+.. .|....+...++..|...| ++|...+++.++..... ......++.+|.-.|+
T Consensus 462 ~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~---------~~~~~~~~~~~~~~g~ 522 (553)
T PRK12370 462 KLTKEISTQ--------EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI---------DNNPGLLPLVLVAHGE 522 (553)
T ss_pred HHHHHhhhc--------cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh---------hcCchHHHHHHHHHhh
Confidence 999887665 6777778888898888888 48888888877764331 1112236777888888
Q ss_pred HHHHHHHHHHHH
Q 004829 534 LEQAVKLLNKAL 545 (728)
Q Consensus 534 ~~~A~~~~~~al 545 (728)
-+.+..+ +++.
T Consensus 523 ~~~~~~~-~~~~ 533 (553)
T PRK12370 523 AIAEKMW-NKFK 533 (553)
T ss_pred hHHHHHH-HHhh
Confidence 8777766 5544
No 67
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=3.4e-14 Score=151.29 Aligned_cols=318 Identities=11% Similarity=0.024 Sum_probs=225.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcC
Q 004829 222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDG 301 (728)
Q Consensus 222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 301 (728)
+......|...+..| +++.|.+...++.+. .+.| ...+...|.++...|+++.|..++.++.+..
T Consensus 84 ~~~~~~~glla~~~g-~~~~A~~~l~~~~~~-------~~~~--~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~----- 148 (409)
T TIGR00540 84 AQKQTEEALLKLAEG-DYAKAEKLIAKNADH-------AAEP--VLNLIKAAEAAQQRGDEARANQHLEEAAELA----- 148 (409)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHhhc-------CCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence 445577788888997 999999999887664 2222 4456678999999999999999999987653
Q ss_pred CchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829 302 QDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIH 381 (728)
Q Consensus 302 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 381 (728)
+... ..+....+.++...|+++.|...++..++. .|....++..++.++...|++++|...+.+.++..
T Consensus 149 p~~~---l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 149 GNDN---ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred CcCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 2221 122455699999999999999999999888 67788899999999999999999999998888652
Q ss_pred HHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004829 382 RENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALT 461 (728)
Q Consensus 382 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 461 (728)
.. .+... .........-....+..+++...+..+..... ...+....++..++..+...|++++|+..++++++
T Consensus 218 ~~--~~~~~--~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p--~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~ 291 (409)
T TIGR00540 218 LF--DDEEF--ADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP--RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK 291 (409)
T ss_pred CC--CHHHH--HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC--HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 11 11111 11111122222333344444445554443210 01123567888999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHH--HHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Q 004829 462 AFKSAKGENHPAVASV--FVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVK 539 (728)
Q Consensus 462 ~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 539 (728)
. .|+.... ...........++...++..++++++... +++. +..+..+|.+++..|++++|.+
T Consensus 292 ~--------~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p------~~~~-~~ll~sLg~l~~~~~~~~~A~~ 356 (409)
T TIGR00540 292 K--------LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD------DKPK-CCINRALGQLLMKHGEFIEAAD 356 (409)
T ss_pred h--------CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC------CChh-HHHHHHHHHHHHHcccHHHHHH
Confidence 7 3433321 12222333445788899999999988721 2332 3778899999999999999999
Q ss_pred HHHH--HHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004829 540 LLNK--ALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE 594 (728)
Q Consensus 540 ~~~~--al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 594 (728)
+|++ +++..++ ...+..+|.++...|+.++|.++|++++...-..++
T Consensus 357 ~le~a~a~~~~p~--------~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~~ 405 (409)
T TIGR00540 357 AFKNVAACKEQLD--------ANDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQD 405 (409)
T ss_pred HHHHhHHhhcCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc
Confidence 9995 5444322 123558999999999999999999999887655443
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.69 E-value=5.9e-15 Score=145.24 Aligned_cols=205 Identities=17% Similarity=0.131 Sum_probs=170.8
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829 429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP 508 (728)
Q Consensus 429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 508 (728)
....+..+..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++....
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-- 96 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-- 96 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--
Confidence 4455778899999999999999999999999887 677788899999999999999999999999998832
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 509 NHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK 588 (728)
Q Consensus 509 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 588 (728)
.....+..+|.++...|++++|+.++++++.... .......+..+|.++...|++++|..++.+++..
T Consensus 97 -------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 97 -------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL-----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred -------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2345788899999999999999999999986421 1222456778999999999999999999999886
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004829 589 FRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEY 668 (728)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~ 668 (728)
. +....++..+|.++...|++++|..++++++.. .|.....+..++.++...|+.++|..+.+.
T Consensus 165 ~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 165 D--------PQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred C--------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2 223457888999999999999999999999887 344455667889999999999999998877
Q ss_pred HHH
Q 004829 669 VVG 671 (728)
Q Consensus 669 al~ 671 (728)
+..
T Consensus 229 ~~~ 231 (234)
T TIGR02521 229 LQK 231 (234)
T ss_pred HHh
Confidence 655
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.69 E-value=7.6e-15 Score=148.66 Aligned_cols=248 Identities=15% Similarity=0.105 Sum_probs=179.0
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 004829 406 KGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLY 485 (728)
Q Consensus 406 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 485 (728)
.+..+.++..+.+++... ..++...+..++.+|.+|...|++++|+..|++++++ .|....+++.+|.++
T Consensus 39 ~~~~e~~i~~~~~~l~~~--~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~ 108 (296)
T PRK11189 39 TLQQEVILARLNQILASR--DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYL 108 (296)
T ss_pred chHHHHHHHHHHHHHccc--cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHH
Confidence 345677777777766332 1234456788999999999999999999999999998 888899999999999
Q ss_pred HHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 004829 486 HKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQM 565 (728)
Q Consensus 486 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 565 (728)
...|++++|+..|++++++ .|....++.++|.++...|++++|+..|++++++.+..+ .... .
T Consensus 109 ~~~g~~~~A~~~~~~Al~l---------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-----~~~~---~ 171 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLEL---------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-----YRAL---W 171 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHH---H
Confidence 9999999999999999998 344567899999999999999999999999998866542 1111 1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004829 566 GVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGV 645 (728)
Q Consensus 566 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 645 (728)
..++...+++++|+..|.+++... . +. .+ ..+.++...|++.++ ..++.+.+.+.... ...|....+
T Consensus 172 ~~l~~~~~~~~~A~~~l~~~~~~~----~--~~----~~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~~~ea 238 (296)
T PRK11189 172 LYLAESKLDPKQAKENLKQRYEKL----D--KE----QW-GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAERLCET 238 (296)
T ss_pred HHHHHccCCHHHHHHHHHHHHhhC----C--cc----cc-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHHHHHH
Confidence 223455788999999998766431 1 11 11 134555556665443 23333332110000 004566789
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCC
Q 004829 646 YSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR 700 (728)
Q Consensus 646 ~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 700 (728)
|++||.++..+|++++|+.+|++++.+ +-|+..+..+.+.++....++
T Consensus 239 ~~~Lg~~~~~~g~~~~A~~~~~~Al~~-------~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 239 YFYLAKYYLSLGDLDEAAALFKLALAN-------NVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCchHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999984 224666666666666555444
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.69 E-value=7.2e-15 Score=144.65 Aligned_cols=207 Identities=20% Similarity=0.208 Sum_probs=174.7
Q ss_pred CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
....+..+..+|.++...|++++|+..+++++... |....++..+|.++...|++++|+.+++++++..+.
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD---------PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN 97 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45567889999999999999999999999998872 335678889999999999999999999999987554
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
. ..++..+|.++...|++++|+.++++++.... .+.....+..+|.++...|++++|..+|.+++..
T Consensus 98 ~-------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 98 N-------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred C-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 35778899999999999999999999986411 1223457888999999999999999999999988
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 004829 631 LEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLV 710 (728)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~ 710 (728)
.|....++..+|.++...|++++|..++++++.+. |.....+..++.++...|+.++|. .+.+
T Consensus 165 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~-~~~~ 227 (234)
T TIGR02521 165 --------DPQRPESLLELAELYYLRGQYKDARAYLERYQQTY--------NQTAESLWLGIRIARALGDVAAAQ-RYGA 227 (234)
T ss_pred --------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHhhHHHHH-HHHH
Confidence 66667788999999999999999999999998852 344566678899999999999999 7777
Q ss_pred HHHhhc
Q 004829 711 TFLDSN 716 (728)
Q Consensus 711 ~ll~~~ 716 (728)
.+....
T Consensus 228 ~~~~~~ 233 (234)
T TIGR02521 228 QLQKLF 233 (234)
T ss_pred HHHhhC
Confidence 765543
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.69 E-value=6.2e-15 Score=133.43 Aligned_cols=207 Identities=18% Similarity=0.136 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 004829 308 KFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP 387 (728)
Q Consensus 308 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 387 (728)
...+...||.-|...|++..|..-++++|+. +|....+|..+|.+|...|+.+.|.+.|++|+.+.+..++
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd- 104 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD- 104 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc-
Confidence 4456899999999999999999999999999 9999999999999999999999999999999999888764
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004829 388 ASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK 467 (728)
Q Consensus 388 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 467 (728)
++++.|..++.+|++++|...|++|+.. +.-+....++.|+|.|.++.|+++.|..+|++++++
T Consensus 105 -------VLNNYG~FLC~qg~~~eA~q~F~~Al~~----P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~----- 168 (250)
T COG3063 105 -------VLNNYGAFLCAQGRPEEAMQQFERALAD----PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL----- 168 (250)
T ss_pred -------hhhhhhHHHHhCCChHHHHHHHHHHHhC----CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh-----
Confidence 6999999999999999999999999753 445677889999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 468 GENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547 (728)
Q Consensus 468 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 547 (728)
.|........++..++..|+|..|..++++...... ..+..+.....+-...|+-+.|-.+=.+....
T Consensus 169 ---dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~---------~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 169 ---DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG---------AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred ---CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc---------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888888999999999999999999999998766532 24566666777888899988888877766666
Q ss_pred HhcC
Q 004829 548 YGKT 551 (728)
Q Consensus 548 ~~~~ 551 (728)
++..
T Consensus 237 fP~s 240 (250)
T COG3063 237 FPYS 240 (250)
T ss_pred CCCc
Confidence 6544
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.5e-12 Score=132.84 Aligned_cols=432 Identities=12% Similarity=0.111 Sum_probs=272.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC
Q 004829 223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ 302 (728)
Q Consensus 223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 302 (728)
..++.-...+...| +|++|+....+.+... |+...+++.--.+....++|++|+.+.+.-.... .
T Consensus 13 ~~l~t~ln~~~~~~-e~e~a~k~~~Kil~~~---------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-----~ 77 (652)
T KOG2376|consen 13 EALLTDLNRHGKNG-EYEEAVKTANKILSIV---------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-----V 77 (652)
T ss_pred HHHHHHHHHhccch-HHHHHHHHHHHHHhcC---------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-----h
Confidence 45666666677776 8999999999998752 3345566777788899999999996665533221 1
Q ss_pred chhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829 303 DHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHR 382 (728)
Q Consensus 303 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 382 (728)
.+ ...+..+.|.++++..++|+..++-+ ++....++...|++++.+|+|++|...|+....-..
T Consensus 78 ~~-----~~~fEKAYc~Yrlnk~Dealk~~~~~-----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 78 IN-----SFFFEKAYCEYRLNKLDEALKTLKGL-----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred cc-----hhhHHHHHHHHHcccHHHHHHHHhcc-----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 11 11378899999999999999998821 223344667789999999999999999998764322
Q ss_pred HcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004829 383 ENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHE-LDVASIDCSIGDAYLSLARFDEAIFSYHKALT 461 (728)
Q Consensus 383 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 461 (728)
... ..-.-.+.++..-...++ .....+.. ......+++.|.++...|+|.+|++.+++++.
T Consensus 142 dd~-----d~~~r~nl~a~~a~l~~~-------------~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 142 DDQ-----DEERRANLLAVAAALQVQ-------------LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred chH-----HHHHHHHHHHHHHhhhHH-------------HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 211 111111122211111111 11111222 33567889999999999999999999999999
Q ss_pred HHHHhcCCCC-------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCH
Q 004829 462 AFKSAKGENH-------PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL 534 (728)
Q Consensus 462 ~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 534 (728)
++++.+..++ .....+...|+.++..+|+..+|...|...+..... +.+..+.+-++|..+-....-+
T Consensus 204 ~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-----D~~~~Av~~NNLva~~~d~~~~ 278 (652)
T KOG2376|consen 204 ICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-----DEPSLAVAVNNLVALSKDQNYF 278 (652)
T ss_pred HHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-----CchHHHHHhcchhhhccccccC
Confidence 9988764432 235567889999999999999999999988876322 3334444444443221111111
Q ss_pred H---------------------------HHH-----------HHHHHHHHHHhcCCCCCC-cHHHHHHHHHHHHHHcCCH
Q 004829 535 E---------------------------QAV-----------KLLNKALKIYGKTPGQQS-TIAGIEAQMGVMYYMTGNY 575 (728)
Q Consensus 535 ~---------------------------~A~-----------~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~ 575 (728)
+ +++ ..-.++.++....++..+ ....++. ......+...+
T Consensus 279 d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll-~~~t~~~~~~~ 357 (652)
T KOG2376|consen 279 DGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILL-QEATKVREKKH 357 (652)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHH-HHHHHHHHHHH
Confidence 1 000 000112222222222221 1111111 11111111133
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHHH
Q 004829 576 SDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGP--YHHDTLGVYSNLAGTY 653 (728)
Q Consensus 576 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~La~~~ 653 (728)
.+|..++ ......++.....+...++.+...+|+++.|++.+...+......+.. ..|. +-..+-.+|
T Consensus 358 ~ka~e~L-------~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~---~V~aiv~l~ 427 (652)
T KOG2376|consen 358 KKAIELL-------LQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG---TVGAIVALY 427 (652)
T ss_pred hhhHHHH-------HHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh---HHHHHHHHH
Confidence 3343333 333333344345678888999999999999999999555333222211 2333 334556678
Q ss_pred HHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829 654 DAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK 721 (728)
Q Consensus 654 ~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~ 721 (728)
.+.++.+-|...+.+|+..++..... .+.....+..++.+-.+.|+-++|. ..++.++..+|..++
T Consensus 428 ~~~~~~~~a~~vl~~Ai~~~~~~~t~-s~~l~~~~~~aa~f~lr~G~~~ea~-s~leel~k~n~~d~~ 493 (652)
T KOG2376|consen 428 YKIKDNDSASAVLDSAIKWWRKQQTG-SIALLSLMREAAEFKLRHGNEEEAS-SLLEELVKFNPNDTD 493 (652)
T ss_pred HhccCCccHHHHHHHHHHHHHHhccc-chHHHhHHHHHhHHHHhcCchHHHH-HHHHHHHHhCCchHH
Confidence 88888889999999999988776543 3667777888899999999999999 999999998776543
No 73
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=2.2e-13 Score=129.00 Aligned_cols=306 Identities=13% Similarity=0.094 Sum_probs=237.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHH
Q 004829 313 MQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEE 392 (728)
Q Consensus 313 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 392 (728)
+..|.-+....+.++|+..|..+++. +|...++...||..|...|..+.|+.+-+..++. ++......
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s----pdlT~~qr 106 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES----PDLTFEQR 106 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----CCCchHHH
Confidence 45566677788999999999999987 8999999999999999999999999987766532 22233345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 004829 393 AADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP 472 (728)
Q Consensus 393 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 472 (728)
..++..||.-|...|-++.|...|....+. ......++..|..+|....+|++|++..++...+-.+. ...
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~---~~~ 177 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDE------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT---YRV 177 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcc------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc---chh
Confidence 667899999999999999999999876532 33445678899999999999999999988887763332 356
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004829 473 AVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTP 552 (728)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 552 (728)
..+..|..||..+....+.+.|...+.+|++. ++..+.+-..+|.++...|+|+.|++.++.+++-.+.
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa---------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~-- 246 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQA---------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE-- 246 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh---------CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH--
Confidence 78889999999999999999999999999998 4446677888999999999999999999998875443
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829 553 GQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILE 632 (728)
Q Consensus 553 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 632 (728)
.+..+...|..+|..+|+.++.+..+.++.+... -..+...++..-....-.+.|..++.+-+..
T Consensus 247 ----yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~---------g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-- 311 (389)
T COG2956 247 ----YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT---------GADAELMLADLIELQEGIDAAQAYLTRQLRR-- 311 (389)
T ss_pred ----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC---------CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--
Confidence 4567888899999999999999999999987621 1234555666666667778888888777776
Q ss_pred HhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHHHHHH
Q 004829 633 KEYGPYHHDTLGVYSNLAGTYDA--MGRIDDAIEILEYVVG 671 (728)
Q Consensus 633 ~~~~~~~~~~~~~~~~La~~~~~--~g~~~~A~~~~~~al~ 671 (728)
+|.....+..+..-... -|...+.+..++..+.
T Consensus 312 ------~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 312 ------KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ------CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 88766444433322222 2345555555555554
No 74
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=6.9e-14 Score=132.31 Aligned_cols=272 Identities=16% Similarity=0.195 Sum_probs=209.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC--CHHHH
Q 004829 398 LMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGEN--HPAVA 475 (728)
Q Consensus 398 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~ 475 (728)
..|.-+....+.++|+..|...++ .++....+...||.+|...|..+.|+...+..++. ++ .....
T Consensus 40 v~GlNfLLs~Q~dKAvdlF~e~l~------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s------pdlT~~qr~ 107 (389)
T COG2956 40 VKGLNFLLSNQPDKAVDLFLEMLQ------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES------PDLTFEQRL 107 (389)
T ss_pred HhHHHHHhhcCcchHHHHHHHHHh------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC------CCCchHHHH
Confidence 456666777888999999877664 36777888999999999999999999988777664 22 23356
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004829 476 SVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQ 555 (728)
Q Consensus 476 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 555 (728)
.++..||.-|...|-++.|...|....+. ......++..|..+|....++++|++..++...+.++. ..
T Consensus 108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de---------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~--~~ 176 (389)
T COG2956 108 LALQQLGRDYMAAGLLDRAEDIFNQLVDE---------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT--YR 176 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcc---------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc--ch
Confidence 78889999999999999999999887664 33455678888999999999999999888877765443 23
Q ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004829 556 STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEY 635 (728)
Q Consensus 556 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 635 (728)
..++..|..++..+....+++.|...+.+|++. ++....+-..+|.++...|+|+.|++.++.+++-
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ----- 243 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ----- 243 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-----
Confidence 467888888999999999999999999999887 4556677888999999999999999999998886
Q ss_pred CCCChh-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHh
Q 004829 636 GPYHHD-TLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLD 714 (728)
Q Consensus 636 ~~~~~~-~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~ 714 (728)
+|+ ...+...|..+|.++|+.++.+.++.++.+.. + ..++...++.+-....-.+.|. .++...+.
T Consensus 244 ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--------~-g~~~~l~l~~lie~~~G~~~Aq-~~l~~Ql~ 310 (389)
T COG2956 244 ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--------T-GADAELMLADLIELQEGIDAAQ-AYLTRQLR 310 (389)
T ss_pred ---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--------C-CccHHHHHHHHHHHhhChHHHH-HHHHHHHh
Confidence 555 45678889999999999999999999988743 1 1233344555555555566666 55555555
Q ss_pred hccc
Q 004829 715 SNSQ 718 (728)
Q Consensus 715 ~~~~ 718 (728)
.+|+
T Consensus 311 r~Pt 314 (389)
T COG2956 311 RKPT 314 (389)
T ss_pred hCCc
Confidence 5554
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.67 E-value=2.3e-13 Score=143.39 Aligned_cols=332 Identities=12% Similarity=0.016 Sum_probs=234.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcH
Q 004829 311 GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASI 390 (728)
Q Consensus 311 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 390 (728)
.+..+|.++...|+++.+...+.++...... ...........+.++...|++++|...++++++..|...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~----- 77 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL----- 77 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-----
Confidence 4889999999999999998888888877543 334555677788999999999999999999998765432
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829 391 EEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGEN 470 (728)
Q Consensus 391 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 470 (728)
.++.. +..+...|++..+.....+++.. ..+..+.....+..+|.++...|++++|+..+++++++
T Consensus 78 ---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-------- 143 (355)
T cd05804 78 ---LALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL-------- 143 (355)
T ss_pred ---HHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------
Confidence 12332 55555566555555555444433 34556777888889999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
.|....++..+|.++...|++++|+.++++++..... ........+..+|.++...|++++|+..|++++...+.
T Consensus 144 ~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 144 NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 7777888999999999999999999999999987533 12233456788999999999999999999998543221
Q ss_pred CCCCCCcHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829 551 TPGQQSTIAGIEA--QMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEAR 628 (728)
Q Consensus 551 ~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 628 (728)
.......+. .+...+...|....+... +.+.......... ......-...+.++...|+.++|...++...
T Consensus 219 ----~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~ 291 (355)
T cd05804 219 ----SDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD--HGLAFNDLHAALALAGAGDKDALDKLLAALK 291 (355)
T ss_pred ----CChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc--ccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 111111111 223333444543333322 2222222111111 1122233467888899999999999999987
Q ss_pred HHHHHhc-CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004829 629 TILEKEY-GPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLG 678 (728)
Q Consensus 629 ~~~~~~~-~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~ 678 (728)
....... .........+....|.++...|++++|+..+..++.+...+-|
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~gg 342 (355)
T cd05804 292 GRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGG 342 (355)
T ss_pred HHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 7654410 0112234567778899999999999999999999998866544
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.67 E-value=2.2e-13 Score=143.49 Aligned_cols=338 Identities=11% Similarity=0.006 Sum_probs=233.8
Q ss_pred ChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829 262 SLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQ 341 (728)
Q Consensus 262 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 341 (728)
+|+.+.++..+|.++...|+++.|...+.++........ . ........+.++...|++++|...++++++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--- 72 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARA--T----ERERAHVEALSAWIAGDLPKALALLEQLLDD--- 72 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC--C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---
Confidence 367788899999999999999999888888887653211 1 1233667889999999999999999999988
Q ss_pred HcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 342 VLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASM 421 (728)
Q Consensus 342 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 421 (728)
.|....++.. +..+...|++..+.....+++... .+..+.....+..+|.++...|++++|+..+++++.
T Consensus 73 -----~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 142 (355)
T cd05804 73 -----YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE 142 (355)
T ss_pred -----CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5665555554 666666666655555555555431 112233345677889999999999999999999987
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829 422 SMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENA 501 (728)
Q Consensus 422 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 501 (728)
+ .|....++..+|.++...|++++|+.++++++..... +.......+..+|.++...|++++|+..|+++
T Consensus 143 ~------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 143 L------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred h------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6 3455678899999999999999999999999987322 12233456778999999999999999999998
Q ss_pred HHHHcCCCCCCCcHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC-CCCCCcHHHHHHHHHHHHHHcCCHHHH
Q 004829 502 LKIYGKPNHGIPSEEIASG--LIDIAAIYQSMNELEQAVKLLNKALKIYGKT-PGQQSTIAGIEAQMGVMYYMTGNYSDS 578 (728)
Q Consensus 502 l~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A 578 (728)
+..... ....... ...+...+...|....+..+ +.+....... .+ ..........+.++...|+.++|
T Consensus 213 ~~~~~~------~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~a 283 (355)
T cd05804 213 IAPSAE------SDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD--HGLAFNDLHAALALAGAGDKDAL 283 (355)
T ss_pred hccccC------CChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc--ccchHHHHHHHHHHhcCCCHHHH
Confidence 644211 1111111 11223333444433333222 2222222111 12 21222223678888999999999
Q ss_pred HHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004829 579 YNTLKSAISKFRTSG-EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGP 637 (728)
Q Consensus 579 ~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 637 (728)
...+........... .........+....+.++...|++++|+..+..++.+...+.|.
T Consensus 284 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs 343 (355)
T cd05804 284 DKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGS 343 (355)
T ss_pred HHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 999998877665521 01122234566778899999999999999999999998777663
No 77
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.67 E-value=9.6e-14 Score=148.80 Aligned_cols=424 Identities=14% Similarity=0.082 Sum_probs=272.7
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhh
Q 004829 215 GLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVE 294 (728)
Q Consensus 215 ~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 294 (728)
..-++..+.++..+|..|...- +...|..+|++|..+ ++..+.+.-..+..|....+++.|....-.+-+
T Consensus 485 lrld~~~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeL---------Datdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 485 LRLDVSLAPAFAFLGQIYRDSD-DMKRAKKCFDKAFEL---------DATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HhcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcC---------CchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 3345555555555555555553 555555555555543 122233344455555555555555555333222
Q ss_pred hhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004829 295 IPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKIC 374 (728)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 374 (728)
.. ........|..+|..|...+++..|+..|+.++.. +|....+|..+|.+|...|+|..|++.|
T Consensus 555 ka-------~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~AlKvF 619 (1238)
T KOG1127|consen 555 KA-------PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSHALKVF 619 (1238)
T ss_pred hc-------hHHHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceehHHHhh
Confidence 11 11112234667888899999999999999999988 8999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHhCCHHHHH
Q 004829 375 QMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAA-NGHELDVASIDCSIGDAYLSLARFDEAI 453 (728)
Q Consensus 375 ~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~ 453 (728)
.++..+.|... ...+..+.+....|+|.+|+..+...+..... ..-....+.++..++..+...|-+.+|.
T Consensus 620 ~kAs~LrP~s~--------y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kav 691 (1238)
T KOG1127|consen 620 TKASLLRPLSK--------YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAV 691 (1238)
T ss_pred hhhHhcCcHhH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 99988766542 34667888899999999999999887654322 1223456778888888888899999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-----------------------cCCh------HHHHHHHHHHHHH
Q 004829 454 FSYHKALTAFKSAKGENHPAVASVFVRLADLYHK-----------------------IGKL------RDSKSYCENALKI 504 (728)
Q Consensus 454 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-----------------------~g~~------~~A~~~~~~al~~ 504 (728)
.+++++++.+.-............+..++.+... ++.. --|.+++-..+.+
T Consensus 692 d~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl 771 (1238)
T KOG1127|consen 692 DFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL 771 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH
Confidence 9999998877654332211222222222222111 1111 1122333333333
Q ss_pred HcCCCCCCCcHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHH
Q 004829 505 YGKPNHGIPSEEIASGLIDIAAIYQS--------MNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYS 576 (728)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 576 (728)
. .....|+++|.-|+. +.+...|+.++.+++++..+. ...++.||.+ ...|++.
T Consensus 772 ~----------~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann-------~~~WnaLGVl-sg~gnva 833 (1238)
T KOG1127|consen 772 A----------IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANN-------EGLWNALGVL-SGIGNVA 833 (1238)
T ss_pred h----------hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhcc-------HHHHHHHHHh-hccchhh
Confidence 1 124567888877765 233457999999999887665 3455666666 5557777
Q ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004829 577 DSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM 656 (728)
Q Consensus 577 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~ 656 (728)
-|..+|-+++.. .+.....|.++|.++....+++.|...|.++..+ +|.....+...+.+....
T Consensus 834 ~aQHCfIks~~s--------ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--------dP~nl~~WlG~Ali~eav 897 (1238)
T KOG1127|consen 834 CAQHCFIKSRFS--------EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--------DPLNLVQWLGEALIPEAV 897 (1238)
T ss_pred hhhhhhhhhhhc--------cccchhheeccceeEEecccHHHhhHHHHhhhhc--------CchhhHHHHHHHHhHHHH
Confidence 777777777665 3334566777777777777777777777777766 666666666666666666
Q ss_pred CChHHHHHHHHHHHHH-----------------------------------------HHHHcCCCChHHHHHHHHHHHHH
Q 004829 657 GRIDDAIEILEYVVGM-----------------------------------------REEKLGTANPDVEDEKRRLAELL 695 (728)
Q Consensus 657 g~~~~A~~~~~~al~~-----------------------------------------~~~~~~~~~p~~~~~~~~La~~~ 695 (728)
|+.-++...|...-++ .-+.+=..||+...++...|.++
T Consensus 898 G~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstl 977 (1238)
T KOG1127|consen 898 GRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTL 977 (1238)
T ss_pred HHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHH
Confidence 6555555444431111 11111136788888899999999
Q ss_pred HHhCChhHHH
Q 004829 696 KEAGRVRNRK 705 (728)
Q Consensus 696 ~~~g~~~~A~ 705 (728)
..++.+++|.
T Consensus 978 EhL~ey~~a~ 987 (1238)
T KOG1127|consen 978 EHLEEYRAAL 987 (1238)
T ss_pred HHHHHHHHHH
Confidence 9999988887
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.67 E-value=2e-14 Score=145.57 Aligned_cols=222 Identities=15% Similarity=0.084 Sum_probs=167.9
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHH
Q 004829 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGD 317 (728)
Q Consensus 238 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~ 317 (728)
..+.++..+.+++...+ ......+..++.+|.+|...|++++|+..|++++++. ++.+. +++.+|.
T Consensus 41 ~~e~~i~~~~~~l~~~~-----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-----P~~~~----a~~~lg~ 106 (296)
T PRK11189 41 QQEVILARLNQILASRD-----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-----PDMAD----AYNYLGI 106 (296)
T ss_pred HHHHHHHHHHHHHcccc-----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----CCCHH----HHHHHHH
Confidence 46788888888875321 1224457889999999999999999999999999875 44443 5999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 004829 318 TYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRR 397 (728)
Q Consensus 318 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~ 397 (728)
++...|++++|+..|++++++ +|....++.++|.++...|++++|+..|++++.+.|... . ..
T Consensus 107 ~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-----~----~~ 169 (296)
T PRK11189 107 YLTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-----Y----RA 169 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----H----HH
Confidence 999999999999999999999 788889999999999999999999999999998765432 1 11
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---HHHhcCCCCHHH
Q 004829 398 LMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTA---FKSAKGENHPAV 474 (728)
Q Consensus 398 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~ 474 (728)
....+....+++++|+..|.++.... ++. .+ ..+.++...|++..+ ..+..+.+. ..+. .+..
T Consensus 170 ~~~~l~~~~~~~~~A~~~l~~~~~~~-----~~~---~~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l----~~~~ 235 (296)
T PRK11189 170 LWLYLAESKLDPKQAKENLKQRYEKL-----DKE---QW-GWNIVEFYLGKISEE-TLMERLKAGATDNTEL----AERL 235 (296)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHhhC-----Ccc---cc-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHH----HHHH
Confidence 11223456789999999997765221 111 11 134555667776544 233333321 1111 4567
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 475 ASVFVRLADLYHKIGKLRDSKSYCENALKI 504 (728)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (728)
..+|+++|.++...|++++|+.+|++++..
T Consensus 236 ~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 236 CETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 789999999999999999999999999988
No 79
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=3e-15 Score=152.43 Aligned_cols=270 Identities=16% Similarity=0.146 Sum_probs=206.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 004829 397 RLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVAS 476 (728)
Q Consensus 397 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 476 (728)
+..|..+++.|+..+|.-.|+.|+.. +|..+.+|..||.+....++-..|+..+++|+++ +|....
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkq------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~Nle 354 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQ------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNLE 354 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhh------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccHH
Confidence 46788999999999999999998854 7999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCC-CCC-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004829 477 VFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH-GIP-SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ 554 (728)
Q Consensus 477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 554 (728)
++..||..|...|.-.+|+.++.+-+..-..... ... ...... ...-......+..-.++|-.+....+..
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~~~~~~--- 427 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAARQLPTK--- 427 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHHhCCCC---
Confidence 9999999999999999999999998775311100 000 000000 0000000011122223333333332211
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829 555 QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKE 634 (728)
Q Consensus 555 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 634 (728)
.-+.+...||.+|...|+|++|+++|+.|+.. .|.....|+.||-.+....+.++|+..|++|+++
T Consensus 428 --~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL---- 493 (579)
T KOG1125|consen 428 --IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL---- 493 (579)
T ss_pred --CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc----
Confidence 22467788999999999999999999999987 5666789999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH--HHHHHHHHHHHHHHhCChhHHH
Q 004829 635 YGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPD--VEDEKRRLAELLKEAGRVRNRK 705 (728)
Q Consensus 635 ~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~--~~~~~~~La~~~~~~g~~~~A~ 705 (728)
.|..++++++||..|..+|.|++|..+|-.|+.+.+.-.+..... .-.++..|-.++..+++.+-+.
T Consensus 494 ----qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 494 ----QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred ----CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 999999999999999999999999999999999987743321111 2345666667777777777443
No 80
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.3e-14 Score=141.61 Aligned_cols=296 Identities=13% Similarity=0.051 Sum_probs=229.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCCh
Q 004829 269 LHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDH 348 (728)
Q Consensus 269 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 348 (728)
....|..++...+|.+|+..|..|+++. ++... .|...+.++...|+|++|.-..++.+.+ ++
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-----pd~a~----yy~nRAa~~m~~~~~~~a~~dar~~~r~--------kd 114 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-----PDNAS----YYSNRAATLMMLGRFEEALGDARQSVRL--------KD 114 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-----ccchh----hhchhHHHHHHHHhHhhcccchhhheec--------CC
Confidence 3446778888899999999999999887 44433 4889999999999999999999998888 67
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 004829 349 RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGH 428 (728)
Q Consensus 349 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 428 (728)
.....+...+.++...++..+|...++..- ++ ....|+..+++. ......
T Consensus 115 ~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~----------------~~-----------~~anal~~~~~~---~~s~s~ 164 (486)
T KOG0550|consen 115 GFSKGQLREGQCHLALSDLIEAEEKLKSKQ----------------AY-----------KAANALPTLEKL---APSHSR 164 (486)
T ss_pred CccccccchhhhhhhhHHHHHHHHHhhhhh----------------hh-----------HHhhhhhhhhcc---cccccC
Confidence 777788888888888888888877766110 00 111222222222 222233
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829 429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP 508 (728)
Q Consensus 429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 508 (728)
.|....+...-+.|+...|++++|...--..+.+ ++....++...|.+++..++.+.|+.+|++++.+....
T Consensus 165 ~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh 236 (486)
T KOG0550|consen 165 EPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDH 236 (486)
T ss_pred CchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhh
Confidence 4555666677788999999999999888888887 88888899999999999999999999999999874321
Q ss_pred CCC---CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829 509 NHG---IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSA 585 (728)
Q Consensus 509 ~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 585 (728)
... ...+.....+..-|.-.++.|++..|.+.|..+|.+.+.. ....+.+|.+++.+...+|+..+|+..++.+
T Consensus 237 ~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n---~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 237 QKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN---KKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred hhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc---cchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 100 0123344556667888899999999999999999987764 3456788899999999999999999999999
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 586 ISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 586 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
+.+ ++.+..++...|.++..+++|++|++.|++|++.
T Consensus 314 l~i--------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 314 LKI--------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 988 7778889999999999999999999999999887
No 81
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=1.2e-13 Score=146.31 Aligned_cols=306 Identities=11% Similarity=0.022 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcC
Q 004829 222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDG 301 (728)
Q Consensus 222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 301 (728)
+...+..|...+..| +|++|.+...++-.. .+.| ...+...+.+....|+++.|..+|.++.+..
T Consensus 84 ~~~~~~~gl~a~~eG-d~~~A~k~l~~~~~~-------~~~p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~----- 148 (398)
T PRK10747 84 ARKQTEQALLKLAEG-DYQQVEKLMTRNADH-------AEQP--VVNYLLAAEAAQQRGDEARANQHLERAAELA----- 148 (398)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHhc-------ccch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----
Confidence 445567788888887 999998666665432 1122 2224445666699999999999999998753
Q ss_pred CchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829 302 QDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIH 381 (728)
Q Consensus 302 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 381 (728)
++.. .......+.++...|+++.|+..+++..+. .|....++..++.+|...|++++|+..+.+..+..
T Consensus 149 ~~~~---~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 149 DNDQ---LPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred Ccch---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 2221 122445589999999999999999999888 78888999999999999999999999998887653
Q ss_pred HHcCCCCcHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829 382 RENTSPASIE--EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKA 459 (728)
Q Consensus 382 ~~~~~~~~~~--~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 459 (728)
.... .... ...++..+........+-+.....++..-. ..+....+...++..+...|+.++|...++++
T Consensus 218 ~~~~--~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~------~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~ 289 (398)
T PRK10747 218 VGDE--EHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR------KTRHQVALQVAMAEHLIECDDHDTAQQIILDG 289 (398)
T ss_pred CCCH--HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH------HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2211 1000 001122221111122222222222222111 12445677888999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Q 004829 460 LTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVK 539 (728)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 539 (728)
++. ..++.....+ +. ...+++++++..+++.++. +|+.+..+..+|.++...+++++|..
T Consensus 290 l~~------~~~~~l~~l~---~~--l~~~~~~~al~~~e~~lk~---------~P~~~~l~l~lgrl~~~~~~~~~A~~ 349 (398)
T PRK10747 290 LKR------QYDERLVLLI---PR--LKTNNPEQLEKVLRQQIKQ---------HGDTPLLWSTLGQLLMKHGEWQEASL 349 (398)
T ss_pred Hhc------CCCHHHHHHH---hh--ccCCChHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 884 2233322222 22 2449999999999998877 45567788999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 540 LLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKF 589 (728)
Q Consensus 540 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 589 (728)
+|+++++..++. ..+..++.++..+|+.++|..+|++++.+.
T Consensus 350 ~le~al~~~P~~--------~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 350 AFRAALKQRPDA--------YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHhcCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999875443 345689999999999999999999998764
No 82
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=4.5e-13 Score=141.86 Aligned_cols=300 Identities=12% Similarity=0.035 Sum_probs=213.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829 312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE 391 (728)
Q Consensus 312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 391 (728)
.+.-|......|+|+.|.+...++-.. .+.....+...+.+....|+++.|..++.++.+..++..
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~--------~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~------ 152 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADH--------AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ------ 152 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc--------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch------
Confidence 456677777789999999777765443 112223344556676999999999999999986554432
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829 392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH 471 (728)
Q Consensus 392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 471 (728)
.......+.++...|++++|+..+++.... .|....++..++.+|...|++++|+..+.+..+... ..
T Consensus 153 -~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~-----~~ 220 (398)
T PRK10747 153 -LPVEITRVRIQLARNENHAARHGVDKLLEV------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV-----GD 220 (398)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC-----CC
Confidence 012234488999999999999999988754 566778899999999999999999999888876511 12
Q ss_pred HHHHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 472 PAVAS-----VFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALK 546 (728)
Q Consensus 472 ~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 546 (728)
+.... ++..+........+-+....+++..-.. .+....+...++..+...|+.++|...++++++
T Consensus 221 ~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~---------~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 221 EEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK---------TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH---------HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 22221 2222222222222222222222222111 234567788899999999999999999999987
Q ss_pred HHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829 547 IYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEE 626 (728)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 626 (728)
. +. ++... +.......++++++++.+++.++. .+..+..+..+|.++...+++++|..+|++
T Consensus 292 ~-~~----~~~l~-----~l~~~l~~~~~~~al~~~e~~lk~--------~P~~~~l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 292 R-QY----DERLV-----LLIPRLKTNNPEQLEKVLRQQIKQ--------HGDTPLLWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred c-CC----CHHHH-----HHHhhccCCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3 11 11111 122223459999999999888765 344467899999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 627 ARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 627 al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
+++. .|+.. .+..++.++.++|+.++|..+|++++.+.
T Consensus 354 al~~--------~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 354 ALKQ--------RPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHhc--------CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9998 77754 45689999999999999999999998865
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.64 E-value=1.8e-13 Score=146.79 Aligned_cols=367 Identities=15% Similarity=0.105 Sum_probs=281.6
Q ss_pred cCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 004829 279 LGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVA 358 (728)
Q Consensus 279 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 358 (728)
..+...|...|-+++.+. +. ...++..||.+|....+...|..+|.+|.++ ++..+.+....+
T Consensus 471 rK~~~~al~ali~alrld-----~~----~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~a 533 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD-----VS----LAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASA 533 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc-----cc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHH
Confidence 345677888888888775 22 2335899999999999999999999999999 889999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 004829 359 EAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCS 438 (728)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 438 (728)
..|....+++.|...+-.+-+..+... ....|...|..|...+++..|+..|+.+++. +|....+|..
T Consensus 534 dtyae~~~we~a~~I~l~~~qka~a~~------~k~nW~~rG~yyLea~n~h~aV~~fQsALR~------dPkD~n~W~g 601 (1238)
T KOG1127|consen 534 DTYAEESTWEEAFEICLRAAQKAPAFA------CKENWVQRGPYYLEAHNLHGAVCEFQSALRT------DPKDYNLWLG 601 (1238)
T ss_pred HHhhccccHHHHHHHHHHHhhhchHHH------HHhhhhhccccccCccchhhHHHHHHHHhcC------CchhHHHHHH
Confidence 999999999999888555444333221 1233556899999999999999999999865 6888899999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHH
Q 004829 439 IGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIA 518 (728)
Q Consensus 439 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 518 (728)
+|.+|...|++..|+..|.++..+ .|......+..+.+....|+|.+|+..+...+..+..-.. .....+
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~--~q~gLa 671 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERT--GQNGLA 671 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--hhhhHH
Confidence 999999999999999999999998 8988899999999999999999999999988876543211 123466
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC-------------------------------------------
Q 004829 519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQ------------------------------------------- 555 (728)
Q Consensus 519 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------------------- 555 (728)
.++..++..+...|-+..|..+++++++.+.-.....
T Consensus 672 E~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~ 751 (1238)
T KOG1127|consen 672 ESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGA 751 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhccc
Confidence 7777777777777777777777776654332110000
Q ss_pred ----C----------------cHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 004829 556 ----S----------------TIAGIEAQMGVMYYM--------TGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQM 607 (728)
Q Consensus 556 ----~----------------~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 607 (728)
. ..+..++++|.-|+. +.+-..|+.++.+++++ .......++.|
T Consensus 752 l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--------~ann~~~WnaL 823 (1238)
T KOG1127|consen 752 LKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--------CANNEGLWNAL 823 (1238)
T ss_pred CcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--------hhccHHHHHHH
Confidence 0 011224566655554 12334677778887776 22234567777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHH
Q 004829 608 GLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDE 687 (728)
Q Consensus 608 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~ 687 (728)
|.+ ...|++.-|..+|-+++.. .|.....|.++|.++....+++-|...|.++..+ .|.+...
T Consensus 824 GVl-sg~gnva~aQHCfIks~~s--------ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--------dP~nl~~ 886 (1238)
T KOG1127|consen 824 GVL-SGIGNVACAQHCFIKSRFS--------EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--------DPLNLVQ 886 (1238)
T ss_pred HHh-hccchhhhhhhhhhhhhhc--------cccchhheeccceeEEecccHHHhhHHHHhhhhc--------CchhhHH
Confidence 776 5668888888888888877 7777889999999999999999999999998875 4888899
Q ss_pred HHHHHHHHHHhCChhHHHHHHHH
Q 004829 688 KRRLAELLKEAGRVRNRKSRSLV 710 (728)
Q Consensus 688 ~~~La~~~~~~g~~~~A~~~~l~ 710 (728)
+...+.+....|+.-++. ..+.
T Consensus 887 WlG~Ali~eavG~ii~~~-~lfa 908 (1238)
T KOG1127|consen 887 WLGEALIPEAVGRIIERL-ILFA 908 (1238)
T ss_pred HHHHHHhHHHHHHHHHHH-HHHH
Confidence 999999999999888877 4433
No 84
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=6.3e-14 Score=136.80 Aligned_cols=291 Identities=18% Similarity=0.160 Sum_probs=229.8
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhh
Q 004829 220 ALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLE 299 (728)
Q Consensus 220 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 299 (728)
..+.-....+..++... +|..|+..|..|+..+ |+.+..|.+.+.+++..|+|++|.-..++.+++.
T Consensus 47 ~~Ae~~k~~gn~~yk~k-~Y~nal~~yt~Ai~~~---------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--- 113 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQK-TYGNALKNYTFAIDMC---------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK--- 113 (486)
T ss_pred HHHHHHHhhcchHHHHh-hHHHHHHHHHHHHHhC---------ccchhhhchhHHHHHHHHhHhhcccchhhheecC---
Confidence 34556777888888884 9999999999999985 4457789999999999999999999999999875
Q ss_pred cCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--------HHHHHHcC--CCChHHHHHHHHHHHHHHHhCCHHH
Q 004829 300 DGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGL--------EIQRQVLG--ETDHRVGETCRYVAEAHVQSLQFDE 369 (728)
Q Consensus 300 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~ 369 (728)
+..+ ..+...+.++..+++..+|...++..- .....+.. ...|....+...-+.|+...|++++
T Consensus 114 --d~~~----k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~ 187 (486)
T KOG0550|consen 114 --DGFS----KGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDE 187 (486)
T ss_pred --CCcc----ccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchh
Confidence 2222 236677788888887777776655211 11111111 1125566677778899999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC------CChhHHHHHHHHHHHH
Q 004829 370 AEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANG------HELDVASIDCSIGDAY 443 (728)
Q Consensus 370 A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~la~~~ 443 (728)
|...--..+++...+ +.+++.-|.+++..++.+.|+.+|++++.+-.... ..+.....+..-|.-.
T Consensus 188 a~~ea~~ilkld~~n--------~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~ 259 (486)
T KOG0550|consen 188 AQSEAIDILKLDATN--------AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDA 259 (486)
T ss_pred HHHHHHHHHhcccch--------hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhH
Confidence 998877777665443 34578889999999999999999999986632211 1244566778889999
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHH
Q 004829 444 LSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLID 523 (728)
Q Consensus 444 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 523 (728)
++.|++..|.+.|..+|.+-.. +....+..|.++|.+...+|+..+|+..++.++.+ ++....++..
T Consensus 260 fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---------D~syikall~ 326 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---------DSSYIKALLR 326 (486)
T ss_pred hhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc---------CHHHHHHHHH
Confidence 9999999999999999998332 24456788999999999999999999999999999 6778999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 524 IAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 524 la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
.|.++..+++|++|++.|+++++....
T Consensus 327 ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 327 RANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999987655
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=3.4e-14 Score=144.86 Aligned_cols=270 Identities=16% Similarity=0.091 Sum_probs=201.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChH
Q 004829 270 HVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHR 349 (728)
Q Consensus 270 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 349 (728)
+..|..+++.|+..+|.-.|+.++.-. |.| +.+|..||.+....++-..|+..+++++++ +|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqd-----P~h----aeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~ 351 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQD-----PQH----AEAWQKLGITQAENENEQNAISALRRCLEL--------DPT 351 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhC-----hHH----HHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCc
Confidence 357999999999999999999999754 444 446999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 004829 350 VGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHE 429 (728)
Q Consensus 350 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 429 (728)
...++..||..|...|.-.+|..++.+-+...+.......... ........-......+..-.++|..+ ....+.
T Consensus 352 NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~-~~~~~~~~s~~~~~~l~~i~~~fLea---a~~~~~- 426 (579)
T KOG1125|consen 352 NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE-NEDFENTKSFLDSSHLAHIQELFLEA---ARQLPT- 426 (579)
T ss_pred cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc-cccccCCcCCCCHHHHHHHHHHHHHH---HHhCCC-
Confidence 9999999999999999999999999998765533210000000 00000000000000111222333222 222221
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC
Q 004829 430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN 509 (728)
Q Consensus 430 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 509 (728)
...+.+...||.+|...|+|++|+.+|+.||.. .|.....|+.||-.+..-.+..+|+..|.+|+++
T Consensus 427 ~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL----- 493 (579)
T KOG1125|consen 427 KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL----- 493 (579)
T ss_pred CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc-----
Confidence 234678899999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC---cHHHHHHHHHHHHHHcCCHHHH
Q 004829 510 HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS---TIAGIEAQMGVMYYMTGNYSDS 578 (728)
Q Consensus 510 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A 578 (728)
.|..++++++||..|..+|.|.+|.++|-.||.+.+....... .--.++..|-.++...++.+-+
T Consensus 494 ----qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 494 ----QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred ----CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 5668899999999999999999999999999999887433221 1123444444555555555533
No 86
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=1.4e-12 Score=124.58 Aligned_cols=389 Identities=12% Similarity=0.096 Sum_probs=263.9
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhh--
Q 004829 221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVL-- 298 (728)
Q Consensus 221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-- 298 (728)
....-+.+|.+++..| +|++|+..|.-+... .++. +....+||.|++-+|.|.+|.....++-+....
T Consensus 56 E~~~~lWia~C~fhLg-dY~~Al~~Y~~~~~~------~~~~---~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~R 125 (557)
T KOG3785|consen 56 EDSLQLWIAHCYFHLG-DYEEALNVYTFLMNK------DDAP---AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIR 125 (557)
T ss_pred hHHHHHHHHHHHHhhc-cHHHHHHHHHHHhcc------CCCC---cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHH
Confidence 3566778899999997 999999999887652 2222 445778999999999999999988876542100
Q ss_pred -------hcCCchh--------HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 004829 299 -------EDGQDHA--------LAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ 363 (728)
Q Consensus 299 -------~~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 363 (728)
..+.+.. .....-.+.||.+.+..-.|++|++.|.+++.- .|+....-..+|.||++
T Consensus 126 LlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--------n~ey~alNVy~ALCyyK 197 (557)
T KOG3785|consen 126 LLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--------NPEYIALNVYMALCYYK 197 (557)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--------ChhhhhhHHHHHHHHHh
Confidence 0001100 001123567788888888999999999998876 78888888999999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHc--CCHHHHH----------------HHHHHHHHHHHh
Q 004829 364 SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSK--GDYEAAL----------------EHYVLASMSMAA 425 (728)
Q Consensus 364 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~--g~~~~A~----------------~~~~~al~~~~~ 425 (728)
+.-|+-+.+.+.-.+...++.. .+.+..+...++. |+..++. ..++.-+-.++.
T Consensus 198 lDYydvsqevl~vYL~q~pdSt--------iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrn 269 (557)
T KOG3785|consen 198 LDYYDVSQEVLKVYLRQFPDST--------IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRN 269 (557)
T ss_pred cchhhhHHHHHHHHHHhCCCcH--------HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeC
Confidence 9999999888887776655432 2344444444432 2222221 111100000000
Q ss_pred cC--------CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHH
Q 004829 426 NG--------HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSY 497 (728)
Q Consensus 426 ~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 497 (728)
.. --..++.+..++...|..+++..+|+.+++.. .|..+.-+...|.++...|+--...++
T Consensus 270 gEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl-----------~PttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 270 GEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL-----------DPTTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred CccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc-----------CCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence 00 01123567788888999999999988776543 777788888999999999998878777
Q ss_pred HHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHH
Q 004829 498 CENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSD 577 (728)
Q Consensus 498 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 577 (728)
++.|-+.++-.+.....-+.......+|.+++...++++.+.++......+... -...++++.++...|++.+
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~Nd-------D~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTND-------DDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------chhhhHHHHHHHHhcChHH
Confidence 777776665544332333344456677888888889999999888766665443 1245689999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004829 578 SYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG 657 (728)
Q Consensus 578 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g 657 (728)
|.+.|-+.-.. .-.........||+||...+.++.|..++-+.- ...+....+..+|..++..+
T Consensus 412 aEelf~~is~~-------~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---------t~~e~fsLLqlIAn~CYk~~ 475 (557)
T KOG3785|consen 412 AEELFIRISGP-------EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---------TPSERFSLLQLIANDCYKAN 475 (557)
T ss_pred HHHHHhhhcCh-------hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---------CchhHHHHHHHHHHHHHHHH
Confidence 99888665321 111223456778999999999999988876521 13344456667788888888
Q ss_pred ChHHHHHHHHHH
Q 004829 658 RIDDAIEILEYV 669 (728)
Q Consensus 658 ~~~~A~~~~~~a 669 (728)
.+=-|.+.|...
T Consensus 476 eFyyaaKAFd~l 487 (557)
T KOG3785|consen 476 EFYYAAKAFDEL 487 (557)
T ss_pred HHHHHHHhhhHH
Confidence 876666666543
No 87
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=6.5e-12 Score=120.14 Aligned_cols=287 Identities=16% Similarity=0.119 Sum_probs=184.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHH
Q 004829 237 ENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLG 316 (728)
Q Consensus 237 ~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la 316 (728)
.+|..|+.+.+-.+..-+ .+....-..+|.|++.+|+|++|+..|.-+.... .+ ....+.+||
T Consensus 36 rDytGAislLefk~~~~~--------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-------~~--~~el~vnLA 98 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDR--------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-------DA--PAELGVNLA 98 (557)
T ss_pred ccchhHHHHHHHhhccch--------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-------CC--CcccchhHH
Confidence 489999998887765321 1122334568999999999999999998877521 11 123488999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 004829 317 DTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADR 396 (728)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~ 396 (728)
.+++.+|.|.+|...-.++-+ .|...+.++.++. +.++-.+-...-+..-+.. .-.
T Consensus 99 cc~FyLg~Y~eA~~~~~ka~k---------~pL~~RLlfhlah---klndEk~~~~fh~~LqD~~------------Edq 154 (557)
T KOG3785|consen 99 CCKFYLGQYIEAKSIAEKAPK---------TPLCIRLLFHLAH---KLNDEKRILTFHSSLQDTL------------EDQ 154 (557)
T ss_pred HHHHHHHHHHHHHHHHhhCCC---------ChHHHHHHHHHHH---HhCcHHHHHHHHHHHhhhH------------HHH
Confidence 999999999999887776532 4555566666654 4454433333222221111 124
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 004829 397 RLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVAS 476 (728)
Q Consensus 397 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 476 (728)
..|+.+.+..-.|.+|++.|.+.+ .+.+.....-..+|.||+++.-|+-+.+.+.--+.. .|+...
T Consensus 155 LSLAsvhYmR~HYQeAIdvYkrvL------~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--------~pdSti 220 (557)
T KOG3785|consen 155 LSLASVHYMRMHYQEAIDVYKRVL------QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--------FPDSTI 220 (557)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH------hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--------CCCcHH
Confidence 467777778888999999998876 346677777788999999999998887776665554 666666
Q ss_pred HHHHHHHHHHHc--CChH----------------HHHHHHHH----------HHHHHcCCCCCCCcHHHHHHHHHHHHHH
Q 004829 477 VFVRLADLYHKI--GKLR----------------DSKSYCEN----------ALKIYGKPNHGIPSEEIASGLIDIAAIY 528 (728)
Q Consensus 477 ~~~~la~~~~~~--g~~~----------------~A~~~~~~----------al~~~~~~~~~~~~~~~~~~~~~la~~~ 528 (728)
+...++..++++ |+.. .+...++. |++.... -....+.+..+|...|
T Consensus 221 A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~-----L~~~IPEARlNL~iYy 295 (557)
T KOG3785|consen 221 AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPS-----LMKHIPEARLNLIIYY 295 (557)
T ss_pred HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchH-----HHhhChHhhhhheeee
Confidence 666665555543 2221 12222211 1111111 0122456788899999
Q ss_pred HHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004829 529 QSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG 593 (728)
Q Consensus 529 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 593 (728)
..+++.++|..+... ..+..+.-|...|.++...|+--...+.++-|-+.+.-.+
T Consensus 296 L~q~dVqeA~~L~Kd----------l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG 350 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKD----------LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVG 350 (557)
T ss_pred cccccHHHHHHHHhh----------cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc
Confidence 999999998877652 2233334455678888888877766666666665555443
No 88
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=7.2e-11 Score=117.36 Aligned_cols=429 Identities=15% Similarity=0.119 Sum_probs=296.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC
Q 004829 223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ 302 (728)
Q Consensus 223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 302 (728)
..+...|.--..++ ++..|...|++||.. + ......+...+.+-++......|..++.+|+.+.+
T Consensus 74 ~~WikYaqwEesq~-e~~RARSv~ERALdv-------d--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP----- 138 (677)
T KOG1915|consen 74 QVWIKYAQWEESQK-EIQRARSVFERALDV-------D--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP----- 138 (677)
T ss_pred HHHHHHHHHHHhHH-HHHHHHHHHHHHHhc-------c--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc-----
Confidence 33444444444443 566666666666542 2 22344577789999999999999999999998752
Q ss_pred chhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829 303 DHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHR 382 (728)
Q Consensus 303 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 382 (728)
.. -..|+....+-..+|+..-|.+.|++=+.. .|.. .+|......-......+.|...|++.+-..|
T Consensus 139 RV----dqlWyKY~ymEE~LgNi~gaRqiferW~~w--------~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP 205 (677)
T KOG1915|consen 139 RV----DQLWYKYIYMEEMLGNIAGARQIFERWMEW--------EPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHP 205 (677)
T ss_pred hH----HHHHHHHHHHHHHhcccHHHHHHHHHHHcC--------CCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecc
Confidence 11 123666666667789999999999988877 4433 4565556666667778888888888775544
Q ss_pred HcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829 383 ENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTA 462 (728)
Q Consensus 383 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 462 (728)
+ +..+...+..-...|+...|...|++|+..+. ++......+...|..-..+..++.|...|+-||+.
T Consensus 206 ~---------v~~wikyarFE~k~g~~~~aR~VyerAie~~~---~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 206 K---------VSNWIKYARFEEKHGNVALARSVYERAIEFLG---DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred c---------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 23567777788888888888888888876653 34444455555566666666777777766666543
Q ss_pred HH---------------HhcC---------------------CCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc
Q 004829 463 FK---------------SAKG---------------------ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYG 506 (728)
Q Consensus 463 ~~---------------~~~~---------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 506 (728)
.. +.+| .++|..-.+++..-.+-...|+.+.-.+.|++|+.-..
T Consensus 274 ~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvp 353 (677)
T KOG1915|consen 274 IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVP 353 (677)
T ss_pred cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Confidence 22 1122 12455556777777777888999999999999987642
Q ss_pred CCCCCCCcHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829 507 KPNHGIPSEEIASGLIDIAAI-YQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSA 585 (728)
Q Consensus 507 ~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 585 (728)
..............|.+.+.. -....+.+.+.+.|+.++++.+.. ..+.+.++...|....++.+...|.+.+-.|
T Consensus 354 p~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk---kFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 354 PASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK---KFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc---cchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 211000011122233333321 235678999999999999987643 4567888888899999999999999999999
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHH
Q 004829 586 ISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEI 665 (728)
Q Consensus 586 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~ 665 (728)
+-.+.+ ..++-..-.+-.++++++....+|++-++. .|....++...|.+-..+|+.+.|...
T Consensus 431 IG~cPK---------~KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~LgdtdRaRai 493 (677)
T KOG1915|consen 431 IGKCPK---------DKLFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTDRARAI 493 (677)
T ss_pred hccCCc---------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 876321 234445556677889999999999999998 999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829 666 LEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ 718 (728)
Q Consensus 666 ~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~ 718 (728)
|+-|+.-- .-+-|.. .+......-...|.++.|. ..++.+++..++
T Consensus 494 felAi~qp----~ldmpel--lwkaYIdFEi~~~E~ekaR-~LYerlL~rt~h 539 (677)
T KOG1915|consen 494 FELAISQP----ALDMPEL--LWKAYIDFEIEEGEFEKAR-ALYERLLDRTQH 539 (677)
T ss_pred HHHHhcCc----ccccHHH--HHHHhhhhhhhcchHHHHH-HHHHHHHHhccc
Confidence 99888621 1122322 2334455666789999999 999999987765
No 89
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=4.5e-11 Score=122.28 Aligned_cols=400 Identities=13% Similarity=0.059 Sum_probs=259.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhh-------
Q 004829 226 LKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVL------- 298 (728)
Q Consensus 226 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------- 298 (728)
++.|.+.++.+ ..++|+..++-. . +....++...|.+++++|+|++|+..|+..++-...
T Consensus 83 fEKAYc~Yrln-k~Dealk~~~~~-~-----------~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r 149 (652)
T KOG2376|consen 83 FEKAYCEYRLN-KLDEALKTLKGL-D-----------RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERR 149 (652)
T ss_pred HHHHHHHHHcc-cHHHHHHHHhcc-c-----------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 78899999996 899999888721 1 112345777899999999999999999987543210
Q ss_pred ---------------hcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCCh-------HHHHHHHH
Q 004829 299 ---------------EDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDH-------RVGETCRY 356 (728)
Q Consensus 299 ---------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~ 356 (728)
...+..+......+++.|.++...|+|.+|++.+++++.++++.+.+.+. ++..+...
T Consensus 150 ~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQ 229 (652)
T KOG2376|consen 150 ANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQ 229 (652)
T ss_pred HHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence 01122223345678999999999999999999999999998886654332 34557788
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHH----HHhcCCChh
Q 004829 357 VAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYE-AALEHYVLASMS----MAANGHELD 431 (728)
Q Consensus 357 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~-~A~~~~~~al~~----~~~~~~~~~ 431 (728)
++.++..+|+-.+|...|...+...+. +....+.+-++|-.+-....-++ .++..++..... ....-....
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~~~----D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q 305 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRNPA----DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ 305 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhcCC----CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999999999999988865443 23334444555543332222222 111111111000 000000122
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC
Q 004829 432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG 511 (728)
Q Consensus 432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 511 (728)
...++.+.+.+.+..+.-+.+.+.....- ...|..................+.+|..++...-+-.
T Consensus 306 k~~i~~N~~lL~l~tnk~~q~r~~~a~lp--------~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~------ 371 (652)
T KOG2376|consen 306 KQAIYRNNALLALFTNKMDQVRELSASLP--------GMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH------ 371 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCC--------ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC------
Confidence 33456666666666666655554433221 2244333333333333333336777777777654441
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT 591 (728)
Q Consensus 512 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 591 (728)
+.....+...++.+...+|+++.|+..+...+.........-.....+-..+-.+|+..++-+-|...+.+|+..++.
T Consensus 372 --p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~ 449 (652)
T KOG2376|consen 372 --PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRK 449 (652)
T ss_pred --CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 223466788899999999999999999986554333222221122223344566778888888899999999998887
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004829 592 SGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEY 668 (728)
Q Consensus 592 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~ 668 (728)
..... ...-..+..++..-.+.|+-++|...+++.++. +|....++..+..+|... +.+.|..+-++
T Consensus 450 ~~t~s-~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--------n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 450 QQTGS-IALLSLMREAAEFKLRHGNEEEASSLLEELVKF--------NPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred hcccc-hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 65443 334456667778888889999999999999998 788888888888887765 56677665443
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.54 E-value=2.7e-11 Score=129.30 Aligned_cols=320 Identities=14% Similarity=0.122 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCC
Q 004829 267 MCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGET 346 (728)
Q Consensus 267 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 346 (728)
.++.....++...|++++|+++++...... ......+-..|.++..+|++++|...|...++.
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I---------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-------- 67 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQI---------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-------- 67 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhC---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence 345567888999999999999998755432 123445889999999999999999999999998
Q ss_pred ChHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHH
Q 004829 347 DHRVGETCRYVAEAHVQSL-----QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYV-LAS 420 (728)
Q Consensus 347 ~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~-~al 420 (728)
.|+....+..+..+..... +.+.-..+|++....+|....+ ..+...+..-..|......|- ..+
T Consensus 68 NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~---------~rl~L~~~~g~~F~~~~~~yl~~~l 138 (517)
T PF12569_consen 68 NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAP---------RRLPLDFLEGDEFKERLDEYLRPQL 138 (517)
T ss_pred CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccch---------hHhhcccCCHHHHHHHHHHHHHHHH
Confidence 7888888888887774333 4555666677665555443221 122222222223443333332 221
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh--cC------CCCH-HHHHHHHHHHHHHHHcCCh
Q 004829 421 MSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSA--KG------ENHP-AVASVFVRLADLYHKIGKL 491 (728)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~------~~~~-~~~~~~~~la~~~~~~g~~ 491 (728)
...++.++.++-.+|....+..-....+...+...... +. ...| ...++++.+|..|...|++
T Consensus 139 --------~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~ 210 (517)
T PF12569_consen 139 --------RKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDY 210 (517)
T ss_pred --------hcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCH
Confidence 12333455555555553333222222222222211110 00 1122 3467889999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH
Q 004829 492 RDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYM 571 (728)
Q Consensus 492 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 571 (728)
++|+.++++++.. .|..+..|...|.++...|++.+|...++.|..+.... -.+-...+..+++
T Consensus 211 ~~Al~~Id~aI~h---------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D-------RyiNsK~aKy~LR 274 (517)
T PF12569_consen 211 EKALEYIDKAIEH---------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD-------RYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHhc---------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh-------HHHHHHHHHHHHH
Confidence 9999999999998 56678899999999999999999999999998775433 2344567888899
Q ss_pred cCCHHHHHHHHHHHHHHHH-HhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004829 572 TGNYSDSYNTLKSAISKFR-TSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG 636 (728)
Q Consensus 572 ~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 636 (728)
.|+.++|...+.....--. ...+-......+.....|.+|.+.|++..|+..|..+.+++.....
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999877654422100 0000011123455667799999999999999999999999887754
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.50 E-value=4.3e-10 Score=120.12 Aligned_cols=323 Identities=15% Similarity=0.137 Sum_probs=208.0
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhc
Q 004829 221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLED 300 (728)
Q Consensus 221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 300 (728)
....++-.+.++...| ++++|+++++...... .+...++...|.++..+|++++|...|...+...
T Consensus 3 ~SE~lLY~~~il~e~g-~~~~AL~~L~~~~~~I---------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---- 68 (517)
T PF12569_consen 3 HSELLLYKNSILEEAG-DYEEALEHLEKNEKQI---------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---- 68 (517)
T ss_pred HHHHHHHHHHHHHHCC-CHHHHHHHHHhhhhhC---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----
Confidence 4567888888999997 9999999997765432 4556778889999999999999999999999875
Q ss_pred CCchhHhHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHH-HHHH
Q 004829 301 GQDHALAKFAGCMQLGDTYAMLG-----QIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEA-EKIC 374 (728)
Q Consensus 301 ~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~ 374 (728)
+++... +..+..+..... +.+.-..+|++....+ |... +...+...+..-..|... ..++
T Consensus 69 -Pdn~~Y----y~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--------p~s~-~~~rl~L~~~~g~~F~~~~~~yl 134 (517)
T PF12569_consen 69 -PDNYDY----YRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--------PRSD-APRRLPLDFLEGDEFKERLDEYL 134 (517)
T ss_pred -CCcHHH----HHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--------cccc-chhHhhcccCCHHHHHHHHHHHH
Confidence 444332 555555553332 3455566666554442 2211 111111111111123222 2222
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-----------CCChhHHHHHHHHHHHH
Q 004829 375 QMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAAN-----------GHELDVASIDCSIGDAY 443 (728)
Q Consensus 375 ~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~~~la~~~ 443 (728)
...+ ..+-| .++..+-.+|....+..-....+.......... ..+....++++.+|..|
T Consensus 135 ~~~l----~KgvP------slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhy 204 (517)
T PF12569_consen 135 RPQL----RKGVP------SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHY 204 (517)
T ss_pred HHHH----hcCCc------hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHH
Confidence 2222 22222 124444444443332222222222222211111 11223467889999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHH
Q 004829 444 LSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLID 523 (728)
Q Consensus 444 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 523 (728)
...|++++|++++++|++. .|..+..|...|.+|-..|++.+|...++.|..+. ...-.+-..
T Consensus 205 d~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD---------~~DRyiNsK 267 (517)
T PF12569_consen 205 DYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD---------LADRYINSK 267 (517)
T ss_pred HHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC---------hhhHHHHHH
Confidence 9999999999999999998 89999999999999999999999999999998883 223344556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcH
Q 004829 524 IAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS--TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSA 598 (728)
Q Consensus 524 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 598 (728)
.+..+.+.|+.++|...+..-..-.......-. ...+.....|.+|.+.|++..|++.|....+.+....+..-.
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfD 344 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFD 344 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 778889999999998876643221110000001 123344567999999999999999999999999888665433
No 92
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.8e-09 Score=107.65 Aligned_cols=389 Identities=11% Similarity=0.039 Sum_probs=294.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCC
Q 004829 268 CLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETD 347 (728)
Q Consensus 268 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 347 (728)
.+...|.--..++++..|...|++||... .. .+..|+..+.+-+...+...|..++.+|+.+ -
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd----~r-----~itLWlkYae~Emknk~vNhARNv~dRAvt~--------l 137 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVD----YR-----NITLWLKYAEFEMKNKQVNHARNVWDRAVTI--------L 137 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcc----cc-----cchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--------c
Confidence 35667888888999999999999999753 11 2335889999999999999999999999999 5
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC
Q 004829 348 HRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANG 427 (728)
Q Consensus 348 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 427 (728)
|.+-..|+....+-..+|+..-|.+.|++-+...|.. .+|......-.+....+.|...|++-+..
T Consensus 138 PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e---------qaW~sfI~fElRykeieraR~IYerfV~~----- 203 (677)
T KOG1915|consen 138 PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE---------QAWLSFIKFELRYKEIERARSIYERFVLV----- 203 (677)
T ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhee-----
Confidence 7788888888888889999999999999998765543 25777777777888899999999887543
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829 428 HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK 507 (728)
Q Consensus 428 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (728)
+|. ...|...+..-...|+..-|...|.+|++.+.. .......+...|..-..+..++.|.-.|+-|++...+
T Consensus 204 -HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk 276 (677)
T KOG1915|consen 204 -HPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK 276 (677)
T ss_pred -ccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 344 457778888999999999999999999987543 3444556666777777778888888888877775433
Q ss_pred CC--------------CC---------------------CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004829 508 PN--------------HG---------------------IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTP 552 (728)
Q Consensus 508 ~~--------------~~---------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 552 (728)
.. .| ...|....+|+..-.+....|+.+.-.+.|++|+.-.+...
T Consensus 277 ~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ 356 (677)
T KOG1915|consen 277 GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPAS 356 (677)
T ss_pred ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchh
Confidence 20 00 01223345566667777778999999999999987655432
Q ss_pred CCCCcHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 553 GQQSTIAGIEAQMGVMY---YMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEART 629 (728)
Q Consensus 553 ~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 629 (728)
......-.+|..+-.++ ....+.+.+.+.|+.++++. +......+.++...|.....+.+...|...+-.|+-
T Consensus 357 ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG 432 (677)
T KOG1915|consen 357 EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG 432 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc----CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc
Confidence 22222233333333333 45789999999999999863 333455788888889999999999999999999887
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHH
Q 004829 630 ILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSL 709 (728)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l 709 (728)
. -|.. ........+-.++++++....+|++.++ -.|....++...|.+-..+|+.+.|. ..+
T Consensus 433 ~--------cPK~-KlFk~YIelElqL~efDRcRkLYEkfle--------~~Pe~c~~W~kyaElE~~LgdtdRaR-aif 494 (677)
T KOG1915|consen 433 K--------CPKD-KLFKGYIELELQLREFDRCRKLYEKFLE--------FSPENCYAWSKYAELETSLGDTDRAR-AIF 494 (677)
T ss_pred c--------CCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHh--------cChHhhHHHHHHHHHHHHhhhHHHHH-HHH
Confidence 7 3332 2334445566778899999999999888 56999999999999999999999999 888
Q ss_pred HHHHhhc
Q 004829 710 VTFLDSN 716 (728)
Q Consensus 710 ~~ll~~~ 716 (728)
+.++...
T Consensus 495 elAi~qp 501 (677)
T KOG1915|consen 495 ELAISQP 501 (677)
T ss_pred HHHhcCc
Confidence 8776544
No 93
>PLN02789 farnesyltranstransferase
Probab=99.46 E-value=2.3e-11 Score=122.72 Aligned_cols=216 Identities=11% Similarity=0.048 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHcCCCCCCC
Q 004829 435 IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIG-KLRDSKSYCENALKIYGKPNHGIP 513 (728)
Q Consensus 435 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~ 513 (728)
++..+-.++...+++++|+..+.+++.+ +|....++...+.++..+| ++++++.++++++..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------- 101 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------- 101 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH---------
Confidence 3333334556678999999999999999 9999999999999999998 689999999999988
Q ss_pred cHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 514 SEEIASGLIDIAAIYQSMNEL--EQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT 591 (728)
Q Consensus 514 ~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 591 (728)
.+....+|...+.++...|+. ++++.++.+++++.++. ..++...+.++...|++++|++++.++++.
T Consensus 102 npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN-------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--- 171 (320)
T PLN02789 102 NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN-------YHAWSHRQWVLRTLGGWEDELEYCHQLLEE--- 171 (320)
T ss_pred CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---
Confidence 344566788899888888874 67889999999887665 578889999999999999999999999987
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChH
Q 004829 592 SGEKKSALFGIALNQMGLACVQR---YTI----NEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA----MGRID 660 (728)
Q Consensus 592 ~~~~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~----~g~~~ 660 (728)
++....+++..+.++... |.+ ++++.+..+++.+ .|+...++..++.++.. +++..
T Consensus 172 -----d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~ 238 (320)
T PLN02789 172 -----DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDP 238 (320)
T ss_pred -----CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccch
Confidence 344467888888887765 323 5788888899998 88888899999999988 45567
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHh
Q 004829 661 DAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEA 698 (728)
Q Consensus 661 ~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~ 698 (728)
+|...+.+++. ..|....++..|+.+|...
T Consensus 239 ~~~~~~~~~~~--------~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 239 EVSSVCLEVLS--------KDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred hHHHHHHHhhc--------ccCCcHHHHHHHHHHHHhh
Confidence 78888887766 3477778888899999864
No 94
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=1.2e-08 Score=102.31 Aligned_cols=427 Identities=14% Similarity=0.054 Sum_probs=280.9
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-ChhHHHHHHHHhhhhhhhh
Q 004829 221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLG-QYNEAIPVLERSVEIPVLE 299 (728)
Q Consensus 221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~ 299 (728)
.+...+.+|..++.--++++.|....++|..+.+.++.-. .....+...++.+|.... .+..|...+.+++++.
T Consensus 45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaiels--- 119 (629)
T KOG2300|consen 45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELS--- 119 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh---
Confidence 3556778888777665799999999999999877663221 223556778999999888 7899999999999986
Q ss_pred cCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH------------------------------------HHc
Q 004829 300 DGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQR------------------------------------QVL 343 (728)
Q Consensus 300 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------------------------------~~~ 343 (728)
...|...-..++.|+.++....++..|++.+.-...... .+.
T Consensus 120 --q~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~ 197 (629)
T KOG2300|consen 120 --QSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIW 197 (629)
T ss_pred --cCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 444444455689999999999999998877542211110 000
Q ss_pred CC--CChHHHHHH----HHHH-HHHHHhCCHHHHHHHHHHHHHHHHHcCCC-----------CcHH--------HHHHHH
Q 004829 344 GE--TDHRVGETC----RYVA-EAHVQSLQFDEAEKICQMALDIHRENTSP-----------ASIE--------EAADRR 397 (728)
Q Consensus 344 ~~--~~~~~~~~~----~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~~~~--------~a~~~~ 397 (728)
.. .+|..-+.+ ..+- ..|...|+...+...+++.-+-......+ +.+. ...++.
T Consensus 198 ~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV 277 (629)
T KOG2300|consen 198 QNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALV 277 (629)
T ss_pred hccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhh
Confidence 00 011111111 1111 12334455555555444333222111110 1110 011111
Q ss_pred HH--HHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhH--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004829 398 LM--GLICDSKGDYEAALEHYVLASMSMAANGHELDV--------ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK 467 (728)
Q Consensus 398 ~l--g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 467 (728)
.+ -.--...|-+++|.++-++++....+....+.. ...+-.+..|-.-.|++.+|++....+.+.+.+.-
T Consensus 278 ~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p 357 (629)
T KOG2300|consen 278 YLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFP 357 (629)
T ss_pred hhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 11 112234677899999999888776655544422 23456677788889999999999999988877652
Q ss_pred CC--CCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829 468 GE--NHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKAL 545 (728)
Q Consensus 468 ~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 545 (728)
++ -....+.....+|......+.++.|...|..|.+.... ..-.+.+-.++|..|...|+-+.-. +++
T Consensus 358 ~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------~dl~a~~nlnlAi~YL~~~~~ed~y----~~l 427 (629)
T KOG2300|consen 358 TPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------IDLQAFCNLNLAISYLRIGDAEDLY----KAL 427 (629)
T ss_pred chHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------HHHHHHHHHhHHHHHHHhccHHHHH----HHH
Confidence 21 02234556677788888889999999999999998644 2346667788999999988754433 233
Q ss_pred HHHh-cCCCC---CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 004829 546 KIYG-KTPGQ---QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAA 621 (728)
Q Consensus 546 ~~~~-~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 621 (728)
+... ..... ....+.+++..|...+.++++.+|...+.+.+++.... ......+..+..||.+..-.|+..++.
T Consensus 428 d~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~ 505 (629)
T KOG2300|consen 428 DLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESR 505 (629)
T ss_pred HhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3322 21011 11345677788889999999999999999999986332 223445677888999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC--hHHHHHHHHH
Q 004829 622 DLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGR--IDDAIEILEY 668 (728)
Q Consensus 622 ~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~--~~~A~~~~~~ 668 (728)
....-++++..++. +.+-.......+-.+|...|+ .+.+.+.|..
T Consensus 506 nmvrpamqlAkKi~--Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 506 NMVRPAMQLAKKIP--DIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred hccchHHHHHhcCC--CchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 99999999988863 366667777777888888888 6666666655
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.45 E-value=8.4e-12 Score=122.92 Aligned_cols=184 Identities=18% Similarity=0.149 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004829 515 EEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE 594 (728)
Q Consensus 515 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 594 (728)
+..+..++.+|..+...|++++|+..|++++...+.. +....+++.+|.++...|++++|+..|+++++....
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--- 102 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS----PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN--- 102 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---
Confidence 4467789999999999999999999999998876543 233457789999999999999999999999987432
Q ss_pred CCcHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHH--------------HHHHHHH
Q 004829 595 KKSALFGIALNQMGLACVQR--------YTINEAADLFEEARTILEKEYGPYHHDTLGV--------------YSNLAGT 652 (728)
Q Consensus 595 ~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------------~~~La~~ 652 (728)
.+....+++.+|.++... |++++|+..|++++.. .+.++....+ ...+|.+
T Consensus 103 --~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 175 (235)
T TIGR03302 103 --HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-----YPNSEYAPDAKKRMDYLRNRLAGKELYVARF 175 (235)
T ss_pred --CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-----CCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233345788899999876 7899999999999887 1222222212 2467899
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829 653 YDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ 718 (728)
Q Consensus 653 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~ 718 (728)
|...|++.+|+..|++++..+ +.+|....+++.++.++...|++++|. .+++.+....|+
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~-~~~~~l~~~~~~ 235 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQ-DAAAVLGANYPD 235 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence 999999999999999999864 456888999999999999999999999 888888877653
No 96
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.44 E-value=8.9e-12 Score=125.35 Aligned_cols=230 Identities=18% Similarity=0.198 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829 392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH 471 (728)
Q Consensus 392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 471 (728)
.+..+...|..|...+++++|...|.++.......++....+..+...+.+|... ++++|+.+|+++++++... +..
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~~ 110 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--GRF 110 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-H
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--CcH
Confidence 3455667788888899999999999999999888888888888888888887666 9999999999999999876 445
Q ss_pred HHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 472 PAVASVFVRLADLYHKI-GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 472 ~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
...+.++..+|.+|... |++++|+++|++|+++++... .......++..+|.++...|+|++|+..|++.......
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~---~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG---SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 66788999999999999 999999999999999998743 45567788899999999999999999999998876544
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 004829 551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR--YTINEAADLFEEAR 628 (728)
Q Consensus 551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al 628 (728)
...........+...+.+++..|++..|...+++.......... ..-...+..|-.++... ..++.|+.-|....
T Consensus 188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~---s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS---SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT---SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 32223344456677888999999999998888887655322222 22345566666666543 46888888887766
Q ss_pred HH
Q 004829 629 TI 630 (728)
Q Consensus 629 ~~ 630 (728)
++
T Consensus 265 ~l 266 (282)
T PF14938_consen 265 RL 266 (282)
T ss_dssp --
T ss_pred cc
Confidence 65
No 97
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=3.9e-08 Score=98.61 Aligned_cols=453 Identities=13% Similarity=0.055 Sum_probs=294.9
Q ss_pred hHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HcCChhHHHHHHHHhhhhhhh
Q 004829 221 LGPFLLKQTREMISSG-ENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHC-SLGQYNEAIPVLERSVEIPVL 298 (728)
Q Consensus 221 ~~~~l~~~a~~~~~~g-~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~ 298 (728)
.+..|+.+|..+...| -+..+++.+.+..... ..+..-.+.+...+|.+++ ...+++.|...+++|..+...
T Consensus 6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~------~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ 79 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQF------QISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKS 79 (629)
T ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhcc------CChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcc
Confidence 4667888888887774 1466777777666553 2223345667777877654 578899999999999987643
Q ss_pred hcCCchhHhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829 299 EDGQDHALAKFAGCMQLGDTYAMLG-QIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMA 377 (728)
Q Consensus 299 ~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 377 (728)
.+. .-...+.+...|+.+|.... .+..|...+++++++.... .-......+.|+.++.-..++..|.+.+.-.
T Consensus 80 ip~--fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~----p~wsckllfQLaql~~idkD~~sA~elLavg 153 (629)
T KOG2300|consen 80 IPS--FYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV----PYWSCKLLFQLAQLHIIDKDFPSALELLAVG 153 (629)
T ss_pred ccc--HHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC----chhhHHHHHHHHHHHhhhccchhHHHHHhcc
Confidence 322 22456778899999999888 8899999999999996542 2334556788999999999999888774322
Q ss_pred HHHHHHc------------------CCCCcHHHHHH------------------------HHHHH-HHHHHcCCHHHHHH
Q 004829 378 LDIHREN------------------TSPASIEEAAD------------------------RRLMG-LICDSKGDYEAALE 414 (728)
Q Consensus 378 l~~~~~~------------------~~~~~~~~a~~------------------------~~~lg-~~~~~~g~~~~A~~ 414 (728)
....... ..++....-.+ |..+- ..|...|+...+..
T Consensus 154 a~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~ 233 (629)
T KOG2300|consen 154 AESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKP 233 (629)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHH
Confidence 1111000 00000000001 11111 12334565555555
Q ss_pred HHHHHHHHHHhcCC-------------ChhH--------HHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHHHHhcCCC-
Q 004829 415 HYVLASMSMAANGH-------------ELDV--------ASIDCSIG--DAYLSLARFDEAIFSYHKALTAFKSAKGEN- 470 (728)
Q Consensus 415 ~~~~al~~~~~~~~-------------~~~~--------~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~- 470 (728)
.+++.......... .+.. ..++..+- .--...|-+++|.++-++++...++....+
T Consensus 234 ~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~ 313 (629)
T KOG2300|consen 234 ALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADL 313 (629)
T ss_pred HHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccc
Confidence 54433222211110 0111 11111111 111245778889998888888766653222
Q ss_pred -CH----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829 471 -HP----AVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG-IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKA 544 (728)
Q Consensus 471 -~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 544 (728)
.+ .....+-.+..+-.-.|++.+|++....+.+.+.+.... --....+.+...+|.....-+.++.|...|..|
T Consensus 314 ~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a 393 (629)
T KOG2300|consen 314 MSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEA 393 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHH
Confidence 11 112344566777788999999999999999887664210 112235667778888888999999999999999
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC------cHHHHHHHHHHHHHHHHcCCHH
Q 004829 545 LKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK------SALFGIALNQMGLACVQRYTIN 618 (728)
Q Consensus 545 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~ 618 (728)
.+..... ...+.+-.++|..|...|+-+.-. ++++. ++..+ ....+.+++..|...+.++++.
T Consensus 394 ~k~t~~~----dl~a~~nlnlAi~YL~~~~~ed~y----~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~ln 462 (629)
T KOG2300|consen 394 TKLTESI----DLQAFCNLNLAISYLRIGDAEDLY----KALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLN 462 (629)
T ss_pred HHhhhHH----HHHHHHHHhHHHHHHHhccHHHHH----HHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHH
Confidence 8875443 234566778999999988755432 23322 22221 1123567788888999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHh
Q 004829 619 EAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEA 698 (728)
Q Consensus 619 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~ 698 (728)
+|...+.+.+++.... ....-....+..|+.+....|+..++.+...-++.+..++ +++|-......-+-.+|...
T Consensus 463 EaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~a~ 538 (629)
T KOG2300|consen 463 EAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQAL 538 (629)
T ss_pred HHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHHHh
Confidence 9999999999985221 1122344566788999999999999999999999998776 56777777777888899999
Q ss_pred CC
Q 004829 699 GR 700 (728)
Q Consensus 699 g~ 700 (728)
|+
T Consensus 539 g~ 540 (629)
T KOG2300|consen 539 GE 540 (629)
T ss_pred Cc
Confidence 88
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.43 E-value=5.7e-11 Score=116.99 Aligned_cols=195 Identities=13% Similarity=0.079 Sum_probs=150.6
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829 429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP 508 (728)
Q Consensus 429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 508 (728)
....+..++.+|..+...|++++|+..|++++... ++++....+++.+|.+|...|++++|+..|+++++....
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~- 102 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN- 102 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-
Confidence 45567789999999999999999999999998872 224455678899999999999999999999999998543
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004829 509 NHGIPSEEIASGLIDIAAIYQSM--------NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYN 580 (728)
Q Consensus 509 ~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 580 (728)
.+....+++.+|.++... |++++|+..|++++...+.... ...++..++..+.
T Consensus 103 -----~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~a~~~~~~~~~---------- 163 (235)
T TIGR03302 103 -----HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY----APDAKKRMDYLRN---------- 163 (235)
T ss_pred -----CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh----HHHHHHHHHHHHH----------
Confidence 344556788899999876 8899999999999988665411 0111111111110
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH
Q 004829 581 TLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRID 660 (728)
Q Consensus 581 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~ 660 (728)
. .......+|.+|+..|++.+|+..|++++..+ +++|....+++.+|.++..+|+++
T Consensus 164 ----~--------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~ 220 (235)
T TIGR03302 164 ----R--------------LAGKELYVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKD 220 (235)
T ss_pred ----H--------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHH
Confidence 0 11234568889999999999999999999872 335667889999999999999999
Q ss_pred HHHHHHHHHHH
Q 004829 661 DAIEILEYVVG 671 (728)
Q Consensus 661 ~A~~~~~~al~ 671 (728)
+|..+++....
T Consensus 221 ~A~~~~~~l~~ 231 (235)
T TIGR03302 221 LAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHh
Confidence 99998887665
No 99
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.41 E-value=6.5e-09 Score=107.49 Aligned_cols=321 Identities=12% Similarity=0.122 Sum_probs=208.7
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 004829 347 DHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAAN 426 (728)
Q Consensus 347 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 426 (728)
+|.....|..... +..|+..+-+..|.+|+...........+ ...+..+|..|...|+.+.|...|+++... ..
T Consensus 345 n~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~--~~Lw~~faklYe~~~~l~~aRvifeka~~V--~y 418 (835)
T KOG2047|consen 345 NPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSP--GTLWVEFAKLYENNGDLDDARVIFEKATKV--PY 418 (835)
T ss_pred CCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCCh--hhHHHHHHHHHHhcCcHHHHHHHHHHhhcC--Cc
Confidence 5666666665544 44788899999999988654333223333 346889999999999999999999998754 22
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH----hcCCCCHH------HHHHHHHHHHHHHHcCChHHHHH
Q 004829 427 GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKS----AKGENHPA------VASVFVRLADLYHKIGKLRDSKS 496 (728)
Q Consensus 427 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~ 496 (728)
+...+++.+|...|..-+...+++.|+.+.++|..+-.. .+.+.+|. ...++..++.+....|-++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 234567889999999999999999999999998765222 11222332 23566677888888899999999
Q ss_pred HHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHH
Q 004829 497 YCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYS 576 (728)
Q Consensus 497 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 576 (728)
.|++.+++--. .+.+..+.|..+....-+++|.+.|++.+.+++-. ....+...|......-+.--..+
T Consensus 499 vYdriidLria---------TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p--~v~diW~tYLtkfi~rygg~klE 567 (835)
T KOG2047|consen 499 VYDRIIDLRIA---------TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP--NVYDIWNTYLTKFIKRYGGTKLE 567 (835)
T ss_pred HHHHHHHHhcC---------CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc--cHHHHHHHHHHHHHHHhcCCCHH
Confidence 99999988422 34566788888888888999999999998876532 11123333333333334445789
Q ss_pred HHHHHHHHHHHHHHHhCCCCcHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH--HHHHH
Q 004829 577 DSYNTLKSAISKFRTSGEKKSALFG-IALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSN--LAGTY 653 (728)
Q Consensus 577 ~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~--La~~~ 653 (728)
.|..+|++|++.+ ++..+ .++...+.+-..-|-...|+..|++|-... ++...-.+++ +..+.
T Consensus 568 raRdLFEqaL~~C-------pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v-------~~a~~l~myni~I~kaa 633 (835)
T KOG2047|consen 568 RARDLFEQALDGC-------PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAV-------KEAQRLDMYNIYIKKAA 633 (835)
T ss_pred HHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHH
Confidence 9999999999853 23333 344455666666677777887777764431 2211111111 11111
Q ss_pred HHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHH
Q 004829 654 DAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRK 705 (728)
Q Consensus 654 ~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~ 705 (728)
..-| ...-...|++|++.. .+..........|.+-...|..+.|.
T Consensus 634 e~yG-v~~TR~iYekaIe~L------p~~~~r~mclrFAdlEtklGEidRAR 678 (835)
T KOG2047|consen 634 EIYG-VPRTREIYEKAIESL------PDSKAREMCLRFADLETKLGEIDRAR 678 (835)
T ss_pred HHhC-CcccHHHHHHHHHhC------ChHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 1112 233445666666643 23344555566677777777777776
No 100
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.39 E-value=7.2e-11 Score=118.79 Aligned_cols=230 Identities=15% Similarity=0.137 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 004829 350 VGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHE 429 (728)
Q Consensus 350 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 429 (728)
.+..+...|.+|...+++++|..+|.++......... ....+..+...+.+|... ++++|+.+|++|+.++...+..
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~--~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~ 110 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD--KFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRF 110 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcH
Confidence 3456666778888999999999999999998887553 345566777777777666 9999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829 430 LDVASIDCSIGDAYLSL-ARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP 508 (728)
Q Consensus 430 ~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 508 (728)
...+.++..+|.+|... |++++|+++|++|+++++.. +.......++..+|.++...|+|++|+..|++........
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~ 188 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN 188 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999 99999999999999999886 2345567788899999999999999999999988764332
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 004829 509 NHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYM--TGNYSDSYNTLKSAI 586 (728)
Q Consensus 509 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al 586 (728)
. .........+...+.+++..|++..|...+++.....+...+ ..-..+...|-.++-. ...+..|+..|...-
T Consensus 189 ~--l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~--s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 189 N--LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS--SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp C--TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT--SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred c--ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC--cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 1 123445556677888999999999999999888766554422 2234444555555532 445666666666554
Q ss_pred HH
Q 004829 587 SK 588 (728)
Q Consensus 587 ~~ 588 (728)
.+
T Consensus 265 ~l 266 (282)
T PF14938_consen 265 RL 266 (282)
T ss_dssp --
T ss_pred cc
Confidence 43
No 101
>PLN02789 farnesyltranstransferase
Probab=99.39 E-value=1.6e-10 Score=116.71 Aligned_cols=210 Identities=10% Similarity=-0.016 Sum_probs=172.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004829 401 LICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLA-RFDEAIFSYHKALTAFKSAKGENHPAVASVFV 479 (728)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 479 (728)
.++...+.+++|+..+.+++.+ .|....+|...+.++..+| ++++++..+.+++.. +|....++.
T Consensus 45 a~l~~~e~serAL~lt~~aI~l------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~ 110 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRL------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWH 110 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhH
Confidence 3445567888999999999877 6888889999999999999 689999999999998 888889999
Q ss_pred HHHHHHHHcCCh--HHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCc
Q 004829 480 RLADLYHKIGKL--RDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQST 557 (728)
Q Consensus 480 ~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 557 (728)
..+.++..+|+. ++++.++++++++ ++....+|...+.++...|++++|+.++.++++..+..
T Consensus 111 ~R~~~l~~l~~~~~~~el~~~~kal~~---------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N------ 175 (320)
T PLN02789 111 HRRWLAEKLGPDAANKELEFTRKILSL---------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN------ 175 (320)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc------
Confidence 999999999874 7889999999988 45577899999999999999999999999999986655
Q ss_pred HHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 004829 558 IAGIEAQMGVMYYMT---GNY----SDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQ----RYTINEAADLFEE 626 (728)
Q Consensus 558 ~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 626 (728)
..+++.++.++... |.+ ++++.+..+++.+ .+....+++.++.++.. .++..+|+..+.+
T Consensus 176 -~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~ 246 (320)
T PLN02789 176 -NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE 246 (320)
T ss_pred -hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 45777788777665 333 4678888888887 34445788888888887 3556778888888
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004829 627 ARTILEKEYGPYHHDTLGVYSNLAGTYDAM 656 (728)
Q Consensus 627 al~~~~~~~~~~~~~~~~~~~~La~~~~~~ 656 (728)
++.. .+....++..|+.+|...
T Consensus 247 ~~~~--------~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 247 VLSK--------DSNHVFALSDLLDLLCEG 268 (320)
T ss_pred hhcc--------cCCcHHHHHHHHHHHHhh
Confidence 7765 666677888999999763
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=2.9e-08 Score=105.17 Aligned_cols=404 Identities=18% Similarity=0.115 Sum_probs=219.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH---HcCCC
Q 004829 270 HVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQ---VLGET 346 (728)
Q Consensus 270 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~ 346 (728)
..|-..|...|.|++|.++.+.-- ..| .-.+|++.|..+...++.+.|+++|+++-...-. .+.++
T Consensus 830 DLlNKlyQs~g~w~eA~eiAE~~D--------RiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~ 898 (1416)
T KOG3617|consen 830 DLLNKLYQSQGMWSEAFEIAETKD--------RIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEY 898 (1416)
T ss_pred HHHHHHHHhcccHHHHHHHHhhcc--------cee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhC
Confidence 345666777888888877665322 112 1235899999999999999999999986322111 11111
Q ss_pred Ch---------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829 347 DH---------RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYV 417 (728)
Q Consensus 347 ~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 417 (728)
.+ .....|...|..+...|+.+.|+.+|..|.+ |+.+..+.+.+|+.++|-..-+
T Consensus 899 p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------------~fs~VrI~C~qGk~~kAa~iA~ 962 (1416)
T KOG3617|consen 899 PKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------------YFSMVRIKCIQGKTDKAARIAE 962 (1416)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------------hhhheeeEeeccCchHHHHHHH
Confidence 11 1123566778888889999999999888764 4445556666677666655443
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH------HHHhcCCCCHHHH---------HHHHHHH
Q 004829 418 LASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTA------FKSAKGENHPAVA---------SVFVRLA 482 (728)
Q Consensus 418 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~~~~---------~~~~~la 482 (728)
+. + .-.+.+.+|..|...|++.+|+.+|.+|-.+ +++.. -.+.. .-+...|
T Consensus 963 es-------g----d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd---~~d~L~nlal~s~~~d~v~aA 1028 (1416)
T KOG3617|consen 963 ES-------G----DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND---MKDRLANLALMSGGSDLVSAA 1028 (1416)
T ss_pred hc-------c----cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHhhcCchhHHHHH
Confidence 32 1 1235567777777777777777777665432 22210 00000 0011123
Q ss_pred HHHHHcC-ChHHHHHHHHH------------------HHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH--
Q 004829 483 DLYHKIG-KLRDSKSYCEN------------------ALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLL-- 541 (728)
Q Consensus 483 ~~~~~~g-~~~~A~~~~~~------------------al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-- 541 (728)
..|...| ....|..+|.+ ++++..+-.... ..+..+..-+..+....+|++|..++
T Consensus 1029 rYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~---sDp~ll~RcadFF~~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1029 RYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG---SDPKLLRRCADFFENNQQYEKAVNLLCL 1105 (1416)
T ss_pred HHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC---CCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333333 44444444433 233332222112 23455677788888889999988765
Q ss_pred ----HHHHHHHhcC-------------C---CCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------HhC
Q 004829 542 ----NKALKIYGKT-------------P---GQQ--STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR------TSG 593 (728)
Q Consensus 542 ----~~al~~~~~~-------------~---~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~ 593 (728)
+.|++++... + +.. .....++..+|.++.++|.|..|-+-|.+|-..+. +.+
T Consensus 1106 ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSG 1185 (1416)
T KOG3617|consen 1106 AREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSG 1185 (1416)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcC
Confidence 4455554432 0 111 13456788999999999999999888887643322 112
Q ss_pred CCC-----------------------------cHH----------HHHHHHHHHHHHHH--------cCCHHHHHHHHHH
Q 004829 594 EKK-----------------------------SAL----------FGIALNQMGLACVQ--------RYTINEAADLFEE 626 (728)
Q Consensus 594 ~~~-----------------------------~~~----------~~~~~~~la~~~~~--------~g~~~~A~~~~~~ 626 (728)
+.. .+. .+.++..||..|.. ..+|++|...+++
T Consensus 1186 dt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~e 1265 (1416)
T KOG3617|consen 1186 DTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEE 1265 (1416)
T ss_pred CcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHH
Confidence 110 110 01233444444432 2456777777766
Q ss_pred HHHHHHHhcCCCChhH--HHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCC
Q 004829 627 ARTILEKEYGPYHHDT--LGVYSNLAGTYDA----MGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR 700 (728)
Q Consensus 627 al~~~~~~~~~~~~~~--~~~~~~La~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 700 (728)
|.+-+.+.-..++... ......++.+-.. +--.+++..-..++-.+.++-.-++.-.....+..|.+-|....+
T Consensus 1266 A~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~ 1345 (1416)
T KOG3617|consen 1266 AAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKN 1345 (1416)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhh
Confidence 6655444332222211 1111112221111 111122333333333332221112222345667778888889999
Q ss_pred hhHHHHHHHHHHHhhccc
Q 004829 701 VRNRKSRSLVTFLDSNSQ 718 (728)
Q Consensus 701 ~~~A~~~~l~~ll~~~~~ 718 (728)
|..|. +.++.+....|.
T Consensus 1346 y~~Ay-Ral~el~~k~p~ 1362 (1416)
T KOG3617|consen 1346 YKPAY-RALTELQKKVPN 1362 (1416)
T ss_pred ccHHH-HHHHHHhhcCCc
Confidence 99999 999888776664
No 103
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.32 E-value=1e-07 Score=98.99 Aligned_cols=300 Identities=14% Similarity=0.113 Sum_probs=200.9
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC-----------------------------Cc---HHH--H
Q 004829 348 HRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP-----------------------------AS---IEE--A 393 (728)
Q Consensus 348 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------------------------~~---~~~--a 393 (728)
...+..|..||..|...|.+++|...|++++...-...+. .. +.. +
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA 324 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence 3566789999999999999999999999997543111100 00 000 0
Q ss_pred -----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHH
Q 004829 394 -----------------------ADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFD 450 (728)
Q Consensus 394 -----------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 450 (728)
.+...+-.+-...|+..+-+..|..|+...............|..+|.+|...|+.+
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 000112223334566677777777776554333334455678999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC---CCCCcHH------HHHHH
Q 004829 451 EAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN---HGIPSEE------IASGL 521 (728)
Q Consensus 451 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~------~~~~~ 521 (728)
.|...|+++...-=.. -.+.+.+|...|..-....+++.|+.++++|...-.... .....|- ...+|
T Consensus 405 ~aRvifeka~~V~y~~----v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKT----VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred HHHHHHHHhhcCCccc----hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 9999999998861111 334578899999999999999999999999876533210 0111121 23456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHH
Q 004829 522 IDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFG 601 (728)
Q Consensus 522 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 601 (728)
..++.+....|-++.-...|++.+++---. +.+..+.|..+....-|++|.+.|++.+.+++- +...
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaT-------Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~------p~v~ 547 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIAT-------PQIIINYAMFLEEHKYFEESFKAYERGISLFKW------PNVY 547 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC------ccHH
Confidence 666777777777777777888777664333 456678888888889999999999999988632 2222
Q ss_pred HHHH---HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH-HHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 602 IALN---QMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGV-YSNLAGTYDAMGRIDDAIEILEYVVG 671 (728)
Q Consensus 602 ~~~~---~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~La~~~~~~g~~~~A~~~~~~al~ 671 (728)
.+|+ .....-+.--..+.|..+|++|++.+ .|..+.. +...|.+-..-|-...|+..|++|..
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~~C-------pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALDGC-------PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3332 22222333347999999999999973 4555443 44456666677888888888888755
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=2.5e-08 Score=93.93 Aligned_cols=225 Identities=16% Similarity=0.136 Sum_probs=166.5
Q ss_pred HHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 004829 277 CSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRY 356 (728)
Q Consensus 277 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 356 (728)
.+..+|.+|++++..-.+.. +. ....+..||.||+...+|..|..+|++.-.+ .|........
T Consensus 21 I~d~ry~DaI~~l~s~~Er~-----p~----~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY 83 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERS-----PR----SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLY 83 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcC-----cc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHH
Confidence 56678999999887655442 11 2235889999999999999999999998777 7888888888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHH
Q 004829 357 VAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASID 436 (728)
Q Consensus 357 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 436 (728)
.+..+++.+.+..|+.......+. + .....++..-+.+.+..+++..+....++.- ....+...
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~-~-------~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--------~en~Ad~~ 147 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN-P-------ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--------SENEADGQ 147 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC-H-------HHHHHHHHHHHHHhcccccCcchHHHHHhcc--------CCCccchh
Confidence 999999999999998877665432 1 1122345556667777888887777665421 12456778
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC-----
Q 004829 437 CSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG----- 511 (728)
Q Consensus 437 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----- 511 (728)
.+.|.+.++.|+++.|++-|+.+++. .......-++++.+++..|+++.|+++..+.++..-+..+.
T Consensus 148 in~gCllykegqyEaAvqkFqaAlqv--------sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm 219 (459)
T KOG4340|consen 148 INLGCLLYKEGQYEAAVQKFQAALQV--------SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGM 219 (459)
T ss_pred ccchheeeccccHHHHHHHHHHHHhh--------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccc
Confidence 89999999999999999999999987 33334456789999999999999999998887754332110
Q ss_pred ----C-----------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829 512 ----I-----------PSEEIASGLIDIAAIYQSMNELEQAVKLLN 542 (728)
Q Consensus 512 ----~-----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 542 (728)
. .......+++..+.++++.++++.|.+.+.
T Consensus 220 ~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 220 TTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred eeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 0 011244566777888999999998876654
No 105
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=99.30 E-value=2.9e-06 Score=95.15 Aligned_cols=475 Identities=12% Similarity=0.024 Sum_probs=293.9
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhh
Q 004829 220 ALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLE 299 (728)
Q Consensus 220 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 299 (728)
..+...+++|..++..-++++.|..+.++++.+.++. +- ......+.+.++.++.+.+... |...+++.++..+.
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~--~~-~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~- 131 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERH--RL-TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET- 131 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc--ch-HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-
Confidence 4578889999999977679999999999999887551 11 1223455667899999888877 99999999987632
Q ss_pred cCCchhHhHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829 300 DGQDHALAKFAGCMQL-GDTYAMLGQIENSILCYTAGLEIQRQVLGETDHR-VGETCRYVAEAHVQSLQFDEAEKICQMA 377 (728)
Q Consensus 300 ~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 377 (728)
..+... ..++..+ ...+...+++..|++.++......... .++. ...+....+.+....+..+++++.++++
T Consensus 132 --~~~~~w-~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~---~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 132 --YGHSAW-YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR---GDPAVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred --cCchhH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 111111 1112222 233333379999999999998886532 1232 3334455566777788888899999988
Q ss_pred HHHHHHc--CCCCcHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHhcCCCh-----------------------
Q 004829 378 LDIHREN--TSPASIEEAADRRLMGL--ICDSKGDYEAALEHYVLASMSMAANGHEL----------------------- 430 (728)
Q Consensus 378 l~~~~~~--~~~~~~~~a~~~~~lg~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------- 430 (728)
....... .+...+....++..+-. ++...|++..+...+.+.-..+......+
T Consensus 206 ~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~ 285 (608)
T PF10345_consen 206 IAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSG 285 (608)
T ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCC
Confidence 7766543 11113333334444433 55677888888777666544433222111
Q ss_pred -------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC---CCCH---------------HHHHHHH
Q 004829 431 -------------DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKG---ENHP---------------AVASVFV 479 (728)
Q Consensus 431 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~---------------~~~~~~~ 479 (728)
..+.+|..-|..+...+..++|.+++.+++...++... ...+ ....++.
T Consensus 286 ~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~ 365 (608)
T PF10345_consen 286 GTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLF 365 (608)
T ss_pred CceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHH
Confidence 11233444566677778888999999999999888751 0000 1223455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC----CCC
Q 004829 480 RLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTP----GQQ 555 (728)
Q Consensus 480 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~ 555 (728)
.++.+..-.+++..|...+..+.....+.............++..|..+...|+.+.|+.+|.+.+-...... ...
T Consensus 366 y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~ 445 (608)
T PF10345_consen 366 YQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFR 445 (608)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcch
Confidence 6677788899999999999998887665331112334577888899999999999999999986553332211 112
Q ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHH-
Q 004829 556 STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG-EKKSALFGIALNQMGLACV--QRYTINEAADLFEEARTIL- 631 (728)
Q Consensus 556 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~- 631 (728)
.....+..++..++...+.-......+.+.++..+... .........++..+-.++. ..-...++...+.++++.+
T Consensus 446 El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~ 525 (608)
T PF10345_consen 446 ELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMAN 525 (608)
T ss_pred HHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHH
Confidence 22333445667777666554442222333333322221 1112222222222222221 2234568999999999988
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHH---HHHHHHHHHHHhCChhHHHHHH
Q 004829 632 EKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVED---EKRRLAELLKEAGRVRNRKSRS 708 (728)
Q Consensus 632 ~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~---~~~~La~~~~~~g~~~~A~~~~ 708 (728)
..... ..-..-++..++..++ .|+..+.......+..+.++. ++.....+ +-..++..+...|+.++|. ..
T Consensus 526 ~~~~n--~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~--~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~-~~ 599 (608)
T PF10345_consen 526 NKLGN--SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS--SDYSDQLWHLVASGMLADSYEVQGDRDKAE-EA 599 (608)
T ss_pred Hhhcc--chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHHcCcHHHHH-HH
Confidence 43321 2233445566666666 899999888888888877665 22222222 3336777899999999998 44
Q ss_pred HHH
Q 004829 709 LVT 711 (728)
Q Consensus 709 l~~ 711 (728)
...
T Consensus 600 ~~~ 602 (608)
T PF10345_consen 600 RQQ 602 (608)
T ss_pred HHH
Confidence 333
No 106
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=3.1e-08 Score=104.95 Aligned_cols=338 Identities=14% Similarity=0.122 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHh------hhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829 267 MCLHVLAAIHCSLGQYNEAIPVLERS------VEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQR 340 (728)
Q Consensus 267 ~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 340 (728)
..|.++|....+..+.+-|.-++-.. ..+.+....++.. -...|.+...+|..++|..+|++.-..
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~------eakvAvLAieLgMlEeA~~lYr~ckR~-- 829 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED------EAKVAVLAIELGMLEEALILYRQCKRY-- 829 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch------hhHHHHHHHHHhhHHHHHHHHHHHHHH--
Confidence 34777888887777777666554321 1111111222221 234566667889999999999887544
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829 341 QVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLAS 420 (728)
Q Consensus 341 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 420 (728)
-.|-..|...|.+++|.++.+.-- .+..-.+|++.+..+...++.+.|+++|+++-
T Consensus 830 --------------DLlNKlyQs~g~w~eA~eiAE~~D----------RiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 830 --------------DLLNKLYQSQGMWSEAFEIAETKD----------RIHLRNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred --------------HHHHHHHHhcccHHHHHHHHhhcc----------ceehhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 123455777888888876544322 12223468889999999999999999998862
Q ss_pred ----HHHHhcCCChh----------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 004829 421 ----MSMAANGHELD----------VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYH 486 (728)
Q Consensus 421 ----~~~~~~~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 486 (728)
++.+...+.|. ....|...|..+...|+.+.|+.+|..|-+.+ .+..+.+
T Consensus 886 ~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~f----------------s~VrI~C 949 (1416)
T KOG3617|consen 886 VHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYF----------------SMVRIKC 949 (1416)
T ss_pred ChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhh----------------hheeeEe
Confidence 22211111111 12456677888888888888888888775542 2333444
Q ss_pred HcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHhcCCCCCCcHHH
Q 004829 487 KIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKAL------KIYGKTPGQQSTIAG 560 (728)
Q Consensus 487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------~~~~~~~~~~~~~~~ 560 (728)
.+|+.++|....++.- ...+.+.||+.|...|++.+|+.+|.+|. .+.+++ +....++.
T Consensus 950 ~qGk~~kAa~iA~esg--------------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~d~L~n 1014 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEESG--------------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMKDRLAN 1014 (1416)
T ss_pred eccCchHHHHHHHhcc--------------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHH
Confidence 4455444443333211 11234455555555555555555554432 222222 11111000
Q ss_pred ---------------HH-------HHHHHHHHHcCCHHHHHHHHHH-----HHHHH-HHhCCCCcHHHHHHHHHHHHHHH
Q 004829 561 ---------------IE-------AQMGVMYYMTGNYSDSYNTLKS-----AISKF-RTSGEKKSALFGIALNQMGLACV 612 (728)
Q Consensus 561 ---------------~~-------~~la~~~~~~g~~~~A~~~~~~-----al~~~-~~~~~~~~~~~~~~~~~la~~~~ 612 (728)
.| ..-..+|.+.|.+.+|+++.-+ ++++. +++....+ +..+..-+..+.
T Consensus 1015 lal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sD---p~ll~RcadFF~ 1091 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSD---PKLLRRCADFFE 1091 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCC---HHHHHHHHHHHH
Confidence 00 0112345555555555544321 33332 23333333 367778888899
Q ss_pred HcCCHHHHHHHHHH------HHHHHHHhc-----------C------CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829 613 QRYTINEAADLFEE------ARTILEKEY-----------G------PYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYV 669 (728)
Q Consensus 613 ~~g~~~~A~~~~~~------al~~~~~~~-----------~------~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a 669 (728)
...+|++|..++-. |+.++.... . ++......++..+|.++.++|.|..|-+-|.+|
T Consensus 1092 ~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1092 NNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 99999999887644 444433211 1 112234568889999999999999999888877
Q ss_pred H
Q 004829 670 V 670 (728)
Q Consensus 670 l 670 (728)
=
T Consensus 1172 G 1172 (1416)
T KOG3617|consen 1172 G 1172 (1416)
T ss_pred h
Confidence 4
No 107
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.28 E-value=1.3e-08 Score=100.32 Aligned_cols=303 Identities=16% Similarity=0.062 Sum_probs=210.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC
Q 004829 223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ 302 (728)
Q Consensus 223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 302 (728)
......|..-+..| +|.+|.....++-+. . +.-..+|..-+.+.-.+|+++.|-.++.++-+.. .
T Consensus 85 ~~~~~egl~~l~eG-~~~qAEkl~~rnae~-------~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-----~ 149 (400)
T COG3071 85 RKALNEGLLKLFEG-DFQQAEKLLRRNAEH-------G--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-----G 149 (400)
T ss_pred HHHHHHHHHHHhcC-cHHHHHHHHHHhhhc-------C--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----C
Confidence 44455566666776 899999888886542 2 3335667778889999999999999999998763 1
Q ss_pred chhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829 303 DHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHR 382 (728)
Q Consensus 303 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 382 (728)
+. ...+....+......|+++.|..-..++++. .|....++.....+|...|++.+...++.+..+..
T Consensus 150 ~~---~l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~- 217 (400)
T COG3071 150 DD---TLAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG- 217 (400)
T ss_pred Cc---hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc-
Confidence 11 2335889999999999999999999999988 78888889999999999999998888776654321
Q ss_pred HcCCCCcHHHHHHHHHHHH--HHHHcCCHHHHHH---HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004829 383 ENTSPASIEEAADRRLMGL--ICDSKGDYEAALE---HYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYH 457 (728)
Q Consensus 383 ~~~~~~~~~~a~~~~~lg~--~~~~~g~~~~A~~---~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 457 (728)
--.... ..-+...+. ++....+-..+.. +.+. +......+| .+...++.-+..+|+.++|.+..+
T Consensus 218 ---~l~~~e-~~~le~~a~~glL~q~~~~~~~~gL~~~W~~---~pr~lr~~p---~l~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 218 ---LLSDEE-AARLEQQAWEGLLQQARDDNGSEGLKTWWKN---QPRKLRNDP---ELVVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred ---CCChHH-HHHHHHHHHHHHHHHHhccccchHHHHHHHh---ccHHhhcCh---hHHHHHHHHHHHcCChHHHHHHHH
Confidence 111111 111222221 1112222222222 2221 111112223 344566778899999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Q 004829 458 KALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQA 537 (728)
Q Consensus 458 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 537 (728)
++++. ..++. ....++ ....+++..=++..++.++. +++.+..+..||.+|++.+.|.+|
T Consensus 288 ~~Lk~------~~D~~---L~~~~~--~l~~~d~~~l~k~~e~~l~~---------h~~~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 288 DALKR------QWDPR---LCRLIP--RLRPGDPEPLIKAAEKWLKQ---------HPEDPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred HHHHh------ccChh---HHHHHh--hcCCCCchHHHHHHHHHHHh---------CCCChhHHHHHHHHHHHhhHHHHH
Confidence 99886 12333 111111 23456777777777777776 334457899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829 538 VKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR 590 (728)
Q Consensus 538 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 590 (728)
..+|+.++...+.. ..+..+|.++.++|+..+|.+.+++++.++.
T Consensus 348 ~~~leaAl~~~~s~--------~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 348 SEALEAALKLRPSA--------SDYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHHHHhcCCCh--------hhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 99999988765443 4667899999999999999999999996543
No 108
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.26 E-value=9.4e-08 Score=94.28 Aligned_cols=303 Identities=14% Similarity=0.068 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhH
Q 004829 353 TCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDV 432 (728)
Q Consensus 353 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 432 (728)
....-|..-...|+|.+|+....++-+..+. + ...+..-+.....+|+++.|-.++.++-+.. ....
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~------p--~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-----~~~~ 152 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ------P--VLAYLLAAEAAQQRGDEDRANRYLAEAAELA-----GDDT 152 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc------h--HHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----CCch
Confidence 3444566667789999999988885443221 1 2346666778889999999999998875431 1233
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCC
Q 004829 433 ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGI 512 (728)
Q Consensus 433 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 512 (728)
..+...++.+....|+++.|.....++++. .|....++.....+|...|++.+...++.+.-+.- .
T Consensus 153 l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~------~ 218 (400)
T COG3071 153 LAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG------L 218 (400)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc------C
Confidence 456778899999999999999999999998 78888888999999999999999998887765431 1
Q ss_pred CcHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829 513 PSEEIASGLIDIAAI--YQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR 590 (728)
Q Consensus 513 ~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 590 (728)
-+.....-+-+.+.. +....+-..+.. +....+-.+...... ..+...++.-+...|+.++|.+...++++...
T Consensus 219 l~~~e~~~le~~a~~glL~q~~~~~~~~g-L~~~W~~~pr~lr~~---p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~ 294 (400)
T COG3071 219 LSDEEAARLEQQAWEGLLQQARDDNGSEG-LKTWWKNQPRKLRND---PELVVAYAERLIRLGDHDEAQEIIEDALKRQW 294 (400)
T ss_pred CChHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHhccHHhhcC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 122222223333222 222222222222 222222222211222 33445678888999999999999999987511
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004829 591 TSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVV 670 (728)
Q Consensus 591 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al 670 (728)
++ .....+ -...-+++..=++..++.++. ||+.+..+..||.+|.+.+.|.+|..+|+.++
T Consensus 295 ------D~---~L~~~~--~~l~~~d~~~l~k~~e~~l~~--------h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl 355 (400)
T COG3071 295 ------DP---RLCRLI--PRLRPGDPEPLIKAAEKWLKQ--------HPEDPLLLSTLGRLALKNKLWGKASEALEAAL 355 (400)
T ss_pred ------Ch---hHHHHH--hhcCCCCchHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 111111 223457777777778888777 88888899999999999999999999999998
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHh
Q 004829 671 GMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLD 714 (728)
Q Consensus 671 ~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~ 714 (728)
... | ....+..+|.++.++|+..+|.+..-+.++.
T Consensus 356 ~~~--------~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 356 KLR--------P-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hcC--------C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 843 2 3456788999999999999999444444433
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.23 E-value=2e-09 Score=120.03 Aligned_cols=150 Identities=13% Similarity=0.130 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 004829 308 KFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP 387 (728)
Q Consensus 308 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 387 (728)
.+.++..|...|...+++++|+..++.+++. .|.....++.+|.++++.+++.++... .++.+.+...
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~-- 97 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL-- 97 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc--
Confidence 4566899999999999999999999988888 888899999999999999998777665 5555544332
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004829 388 ASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK 467 (728)
Q Consensus 388 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 467 (728)
++ .+++++...+. +.+..-.+++.+|.||-.+|++++|...|++++++
T Consensus 98 --------------------~~-~~ve~~~~~i~------~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~----- 145 (906)
T PRK14720 98 --------------------KW-AIVEHICDKIL------LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA----- 145 (906)
T ss_pred --------------------ch-hHHHHHHHHHH------hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----
Confidence 22 23333332221 12334458899999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 468 GENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIY 505 (728)
Q Consensus 468 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 505 (728)
+|..+.++.++|..|... ++++|+.++.+|+..+
T Consensus 146 ---D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 146 ---DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred ---CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 789999999999999999 9999999999988763
No 110
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=2.7e-08 Score=91.89 Aligned_cols=210 Identities=14% Similarity=0.071 Sum_probs=164.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 004829 407 GDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYH 486 (728)
Q Consensus 407 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 486 (728)
.+.++-+++....+.........++...++-.+..+....|+.+.|..++++.... .|...++...-|..+.
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--------fp~S~RV~~lkam~lE 97 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--------FPGSKRVGKLKAMLLE 97 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--------CCCChhHHHHHHHHHH
Confidence 34555666666555444433344566677778888888999999999998887665 4566667777899999
Q ss_pred HcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 004829 487 KIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMG 566 (728)
Q Consensus 487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 566 (728)
..|++++|+++|+..++- +|....++...-.+...+|+.-+|++.+...++.+... ..+|..++
T Consensus 98 a~~~~~~A~e~y~~lL~d---------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-------~EAW~eLa 161 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLED---------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-------QEAWHELA 161 (289)
T ss_pred HhhchhhHHHHHHHHhcc---------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-------HHHHHHHH
Confidence 999999999999998765 34455566677777888999999999999999888766 57889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004829 567 VMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY---TINEAADLFEEARTILEKEYGPYHHDTL 643 (728)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~ 643 (728)
.+|+..|+|++|.-++++.+-+ .|+....+..+|.+++-+| +++-|.++|.+++++ .|...
T Consensus 162 eiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl--------~~~~~ 225 (289)
T KOG3060|consen 162 EIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL--------NPKNL 225 (289)
T ss_pred HHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--------ChHhH
Confidence 9999999999999999999876 5556678888898888776 688999999999999 77666
Q ss_pred HHHHHHHHHHHHc
Q 004829 644 GVYSNLAGTYDAM 656 (728)
Q Consensus 644 ~~~~~La~~~~~~ 656 (728)
.+++.+-.+....
T Consensus 226 ral~GI~lc~~~l 238 (289)
T KOG3060|consen 226 RALFGIYLCGSAL 238 (289)
T ss_pred HHHHHHHHHHHHH
Confidence 6777665555443
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.22 E-value=8.4e-10 Score=122.43 Aligned_cols=158 Identities=8% Similarity=-0.012 Sum_probs=135.3
Q ss_pred HcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 004829 487 KIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMG 566 (728)
Q Consensus 487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 566 (728)
..+....+...+-+++.+.+. .+....++..||.+....|.+++|..+++.++++.++. ..+..+++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-------~~a~~~~a 127 (694)
T PRK15179 61 RHAAVHKPAAALPELLDYVRR------YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS-------SEAFILML 127 (694)
T ss_pred HhhhhcchHhhHHHHHHHHHh------ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-------HHHHHHHH
Confidence 334444455555555555544 34457899999999999999999999999999998877 56788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004829 567 VMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVY 646 (728)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 646 (728)
.++.+++++++|+..+++++.. .+..+.+++.+|.++.+.|++++|+.+|++++.- +|+...++
T Consensus 128 ~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~ 191 (694)
T PRK15179 128 RGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGY 191 (694)
T ss_pred HHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHH
Confidence 9999999999999999999987 5556789999999999999999999999999986 88888899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 647 SNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 647 ~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
..+|.++...|+.++|...|+++++..
T Consensus 192 ~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 192 VGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999864
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.20 E-value=1.7e-10 Score=103.00 Aligned_cols=126 Identities=12% Similarity=0.019 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCH
Q 004829 538 VKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTI 617 (728)
Q Consensus 538 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 617 (728)
..+|++++++.+.. +..+|.++...|++++|+.+|++++.+ .+....++..+|.++...|++
T Consensus 13 ~~~~~~al~~~p~~----------~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 13 EDILKQLLSVDPET----------VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHHHcCHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhH
Confidence 45677887775442 456899999999999999999999987 455678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 004829 618 NEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE 697 (728)
Q Consensus 618 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~ 697 (728)
++|+..|++++.+ +|....+++++|.++..+|++++|+..|++++.+. |+....+..++.+...
T Consensus 75 ~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--------p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 75 TTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--------YADASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHH
Confidence 9999999999998 88888899999999999999999999999999954 6666666666665543
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.19 E-value=1e-08 Score=108.09 Aligned_cols=253 Identities=18% Similarity=0.151 Sum_probs=195.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHhc----------CCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhH
Q 004829 237 ENPQKALELAKRAMKSFEICAN----------GKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHAL 306 (728)
Q Consensus 237 ~~~~~A~~~~~~Al~~~~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 306 (728)
+-.+.++...+.++..+..... ...-|.....-..++..+...|-...|+..|++.-
T Consensus 359 RtveR~~~q~q~lv~~iq~~e~~v~nRlsy~ya~~lpp~Wq~q~~laell~slGitksAl~I~Erle------------- 425 (777)
T KOG1128|consen 359 RTVERALSQMQFLVKAIQMKEYSVLNRLSYIYAPHLPPIWQLQRLLAELLLSLGITKSALVIFERLE------------- 425 (777)
T ss_pred cchhhHHHHHHHHHHHHhhccHhHHhcccccccCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------------
Confidence 4566777666666655443211 01113445556678999999999999999998743
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q 004829 307 AKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTS 386 (728)
Q Consensus 307 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 386 (728)
.|-....||...|+..+|..+..+-++- +..+..|..+|.+.... .+|+++.++.....
T Consensus 426 ----mw~~vi~CY~~lg~~~kaeei~~q~lek---------~~d~~lyc~LGDv~~d~-------s~yEkawElsn~~s- 484 (777)
T KOG1128|consen 426 ----MWDPVILCYLLLGQHGKAEEINRQELEK---------DPDPRLYCLLGDVLHDP-------SLYEKAWELSNYIS- 484 (777)
T ss_pred ----HHHHHHHHHHHhcccchHHHHHHHHhcC---------CCcchhHHHhhhhccCh-------HHHHHHHHHhhhhh-
Confidence 2677888999999999998887776552 34445566666555444 45555555544332
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004829 387 PASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSA 466 (728)
Q Consensus 387 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 466 (728)
+.+...+|......++|.++.++++.++.+ .+.....|+.+|.+..+.+++..|..+|..++.+
T Consensus 485 ------arA~r~~~~~~~~~~~fs~~~~hle~sl~~------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL---- 548 (777)
T KOG1128|consen 485 ------ARAQRSLALLILSNKDFSEADKHLERSLEI------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL---- 548 (777)
T ss_pred ------HHHHHhhccccccchhHHHHHHHHHHHhhc------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc----
Confidence 234666777777899999999999999876 6788899999999999999999999999999998
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 467 KGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALK 546 (728)
Q Consensus 467 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 546 (728)
.|+...++++++..|...++-.+|...+++|++.-. ....+|-+...+....|.+++|+..|.+.+.
T Consensus 549 ----~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~---------~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 549 ----EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY---------QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred ----CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC---------CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998842 2345677777888999999999999999998
Q ss_pred HHhcCC
Q 004829 547 IYGKTP 552 (728)
Q Consensus 547 ~~~~~~ 552 (728)
+.....
T Consensus 616 ~~~~~~ 621 (777)
T KOG1128|consen 616 LRKKYK 621 (777)
T ss_pred hhhhcc
Confidence 877654
No 114
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=3.9e-08 Score=92.63 Aligned_cols=377 Identities=11% Similarity=-0.035 Sum_probs=210.0
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhh
Q 004829 216 LGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI 295 (728)
Q Consensus 216 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 295 (728)
...|.....|.-+|.+|+... +|..|.++|++.-..+ |......+..+..+++.+.+.+|+.........
T Consensus 38 Er~p~~rAgLSlLgyCYY~~Q-~f~~AA~CYeQL~ql~---------P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~ 107 (459)
T KOG4340|consen 38 ERSPRSRAGLSLLGYCYYRLQ-EFALAAECYEQLGQLH---------PELEQYRLYQAQSLYKACIYADALRVAFLLLDN 107 (459)
T ss_pred hcCccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC
Confidence 344555556666666666663 6777777776665543 333443444566666666777666666554321
Q ss_pred hhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004829 296 PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQ 375 (728)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 375 (728)
+...-.++..-+.+.+..+++..+..+.++.- ....+....+.|.+.++.|+|+.|.+-|+
T Consensus 108 ---------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp----------~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 108 ---------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP----------SENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred ---------HHHHHHHHHHHHHHhcccccCcchHHHHHhcc----------CCCccchhccchheeeccccHHHHHHHHH
Confidence 11111223333444445555555544443211 12456677888888999999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC------------------C-----ChhH
Q 004829 376 MALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANG------------------H-----ELDV 432 (728)
Q Consensus 376 ~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------------------~-----~~~~ 432 (728)
.+++...-.+ ..-++++.++++.+++..|+++....+..-.+.. + ....
T Consensus 169 aAlqvsGyqp--------llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 169 AALQVSGYQP--------LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHhhcCCCc--------hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 9887653322 1356788899999999999998877765422110 0 0122
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCC
Q 004829 433 ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGI 512 (728)
Q Consensus 433 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 512 (728)
..+++..+.++++.++++.|.+.+...--.. .+...+.++.+++..-. .+++.+...-++-.+.+.
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRa------E~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n------- 306 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRA------EEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN------- 306 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcc------cccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-------
Confidence 4456666778888888888776553321110 01122345566654432 355666666555555551
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHH
Q 004829 513 PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS-TIAGIEAQMGVM-YYMTGNYSDSYNTLKSAISKFR 590 (728)
Q Consensus 513 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~ 590 (728)
|.-..++.++-.+|++..-|+-|...+- +.+.... .+...++.|-.. -..+-..++|.+-+......+.
T Consensus 307 --PfP~ETFANlLllyCKNeyf~lAADvLA-------En~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~ 377 (459)
T KOG4340|consen 307 --PFPPETFANLLLLYCKNEYFDLAADVLA-------ENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLT 377 (459)
T ss_pred --CCChHHHHHHHHHHhhhHHHhHHHHHHh-------hCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 1223455666667777665555544432 2211110 112222233222 2334556666655544332211
Q ss_pred HhCCCCcHHHHHHHHHHH-HHHHH--c---CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004829 591 TSGEKKSALFGIALNQMG-LACVQ--R---YTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE 664 (728)
Q Consensus 591 ~~~~~~~~~~~~~~~~la-~~~~~--~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 664 (728)
.-+..++ .+... . .....|++.|+++++++ ..++...|++|+...+|..+.+
T Consensus 378 -----------~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y-----------LPVlMa~AkiyW~~~Dy~~vEk 435 (459)
T KOG4340|consen 378 -----------EKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY-----------LPVLMAQAKIYWNLEDYPMVEK 435 (459)
T ss_pred -----------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhccccccHHHHH
Confidence 1111111 11111 1 12345666677776662 3366788999999999999999
Q ss_pred HHHHHHHHHH
Q 004829 665 ILEYVVGMRE 674 (728)
Q Consensus 665 ~~~~al~~~~ 674 (728)
.|+..++.+.
T Consensus 436 ~Fr~SvefC~ 445 (459)
T KOG4340|consen 436 IFRKSVEFCN 445 (459)
T ss_pred HHHHHHhhhc
Confidence 9999999773
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.17 E-value=4.3e-10 Score=100.40 Aligned_cols=125 Identities=17% Similarity=0.125 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHH
Q 004829 371 EKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFD 450 (728)
Q Consensus 371 ~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 450 (728)
..+|++++.+.|.. +..+|.++...|++++|+.+|.+++.+ .|....++..+|.++...|+++
T Consensus 13 ~~~~~~al~~~p~~-----------~~~~g~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~g~~~ 75 (144)
T PRK15359 13 EDILKQLLSVDPET-----------VYASGYASWQEGDYSRAVIDFSWLVMA------QPWSWRAHIALAGTWMMLKEYT 75 (144)
T ss_pred HHHHHHHHHcCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHHhhHH
Confidence 45678888776553 456899999999999999999998865 6778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHH
Q 004829 451 EAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQ 529 (728)
Q Consensus 451 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~ 529 (728)
+|+..|++++.+ .|....+++++|.++...|++++|+..|++++.+. |.....+..++.+..
T Consensus 76 ~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~---------p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 76 TAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS---------YADASWSEIRQNAQI 137 (144)
T ss_pred HHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHH
Confidence 999999999998 88899999999999999999999999999999983 334455555555544
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.16 E-value=1.3e-09 Score=121.01 Aligned_cols=176 Identities=11% Similarity=-0.023 Sum_probs=145.2
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhh
Q 004829 218 NPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV 297 (728)
Q Consensus 218 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 297 (728)
..+.++.++.+++.-....+....+.+..-+++.+.+.. +..+.++.+||.+....|.+++|..+++.++++.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~- 116 (694)
T PRK15179 44 SEEAGRELLQQARQVLERHAAVHKPAAALPELLDYVRRY------PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF- 116 (694)
T ss_pred chhHHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhc------cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-
Confidence 334455555555544443336777777777777776554 5568889999999999999999999999999986
Q ss_pred hhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829 298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMA 377 (728)
Q Consensus 298 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 377 (728)
+++.. ++..++.++.+++++++|+..+++++.. .|+.+.+++.+|.++...|++++|+.+|+++
T Consensus 117 ----Pd~~~----a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~ 180 (694)
T PRK15179 117 ----PDSSE----AFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERL 180 (694)
T ss_pred ----CCcHH----HHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 55544 4899999999999999999999999998 8999999999999999999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829 378 LDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMA 424 (728)
Q Consensus 378 l~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 424 (728)
+...+. ...++..+|.++...|+.++|...|++++....
T Consensus 181 ~~~~p~--------~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 181 SRQHPE--------FENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HhcCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 973221 135689999999999999999999999987753
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.13 E-value=4e-09 Score=99.50 Aligned_cols=125 Identities=14% Similarity=0.112 Sum_probs=98.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004829 572 TGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAG 651 (728)
Q Consensus 572 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~ 651 (728)
.++.++++..+++++.. .+.....|..+|.+|...|++++|+..|++++.+ .|+...++..+|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 55667777778777776 3445678888888888888888888888888888 7777778888888
Q ss_pred HH-HHcCC--hHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829 652 TY-DAMGR--IDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK 721 (728)
Q Consensus 652 ~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~ 721 (728)
++ ...|+ +++|...++++++ .+|....++..||..+...|++++|+ ..++.+++..|...+
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~--------~dP~~~~al~~LA~~~~~~g~~~~Ai-~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALA--------LDANEVTALMLLASDAFMQADYAQAI-ELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHH--------hCCCChhHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCcc
Confidence 64 66676 4888888888888 35777788888888888888888888 888888887777554
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.11 E-value=1.2e-08 Score=114.12 Aligned_cols=236 Identities=13% Similarity=0.051 Sum_probs=173.1
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhh
Q 004829 214 AGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSV 293 (728)
Q Consensus 214 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 293 (728)
...-+|....++..+...+...+ ++++|+..++.++... |....+|+.+|.++++.+++.++... .++
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~-~~deai~i~~~~l~~~---------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l 90 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSEN-LTDEAKDICEEHLKEH---------KKSISALYISGILSLSRRPLNDSNLL--NLI 90 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhC---------CcceehHHHHHHHHHhhcchhhhhhh--hhh
Confidence 44557888999999999998986 9999999999888753 55677788999999999999998877 666
Q ss_pred hhhhhhcCCchhHh----------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 004829 294 EIPVLEDGQDHALA----------KFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ 363 (728)
Q Consensus 294 ~~~~~~~~~~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 363 (728)
.+........-... .-.+++.+|.||..+|++++|...|++++++ +|..+.++.++|..|..
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEE 162 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHH
Confidence 65532211100000 1136899999999999999999999999999 79999999999999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 004829 364 SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAY 443 (728)
Q Consensus 364 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 443 (728)
. ++++|+.++.+|+..+-........ - -.....+.....+++.-....++.+.. -.....+..+.-+=.+|
T Consensus 163 ~-dL~KA~~m~~KAV~~~i~~kq~~~~--~--e~W~k~~~~~~~d~d~f~~i~~ki~~~----~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 163 E-DKEKAITYLKKAIYRFIKKKQYVGI--E--EIWSKLVHYNSDDFDFFLRIERKVLGH----REFTRLVGLLEDLYEPY 233 (906)
T ss_pred h-hHHHHHHHHHHHHHHHHhhhcchHH--H--HHHHHHHhcCcccchHHHHHHHHHHhh----hccchhHHHHHHHHHHH
Confidence 9 9999999999999875433321111 1 111222333333444433333332211 11334455666777889
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 004829 444 LSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYH 486 (728)
Q Consensus 444 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 486 (728)
....+|++++.+++.+|++ .+....+...++.+|.
T Consensus 234 ~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 234 KALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH
Confidence 9999999999999999998 7777888889998887
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.07 E-value=7.8e-09 Score=97.51 Aligned_cols=153 Identities=18% Similarity=0.210 Sum_probs=122.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHH
Q 004829 357 VAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASID 436 (728)
Q Consensus 357 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 436 (728)
-+..|+..|+++......++... +. .-+...++.++++..+++++.. .|.....|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~--~~-----------------~~~~~~~~~~~~i~~l~~~L~~------~P~~~~~w 76 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD--PL-----------------HQFASQQTPEAQLQALQDKIRA------NPQNSEQW 76 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC--cc-----------------ccccCchhHHHHHHHHHHHHHH------CCCCHHHH
Confidence 34568889998876544322111 00 0111256678888888888765 67778899
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHHHHcCCCCCCC
Q 004829 437 CSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLY-HKIGK--LRDSKSYCENALKIYGKPNHGIP 513 (728)
Q Consensus 437 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~~ 513 (728)
..+|.+|...|++++|+..|++++.+ .|....++..+|.++ ...|+ +++|...++++++.
T Consensus 77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--------- 139 (198)
T PRK10370 77 ALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--------- 139 (198)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh---------
Confidence 99999999999999999999999999 888899999999975 67787 59999999999999
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829 514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 551 (728)
+|....++..+|..++..|++++|+.++++++++.+..
T Consensus 140 dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 140 DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 44467889999999999999999999999999987654
No 120
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=2e-07 Score=86.27 Aligned_cols=207 Identities=13% Similarity=-0.011 Sum_probs=163.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHH
Q 004829 237 ENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLG 316 (728)
Q Consensus 237 ~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la 316 (728)
.+.++-++++.+.+.....- ...++....+-.+..+....|+.+-|..++++....+ +.... +...-|
T Consensus 26 rnseevv~l~~~~~~~~k~~---~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-----p~S~R----V~~lka 93 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG---ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-----PGSKR----VGKLKA 93 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc---ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-----CCChh----HHHHHH
Confidence 47888888888887765443 2225566677788888889999999999999877654 33332 356678
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 004829 317 DTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADR 396 (728)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~ 396 (728)
..+...|++++|+++|+..++- +|....++..--.+...+|+--+|++.+...++.+... ..+|
T Consensus 94 m~lEa~~~~~~A~e~y~~lL~d--------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D--------~EAW 157 (289)
T KOG3060|consen 94 MLLEATGNYKEAIEYYESLLED--------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND--------QEAW 157 (289)
T ss_pred HHHHHhhchhhHHHHHHHHhcc--------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc--------HHHH
Confidence 8889999999999999998866 77777777777777888999999999999999887654 3469
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcCCCCHH
Q 004829 397 RLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLA---RFDEAIFSYHKALTAFKSAKGENHPA 473 (728)
Q Consensus 397 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~ 473 (728)
..++.+|...|+|++|.-++++.+-+ .|.....+..+|.+++.+| ++.-|..+|.+++++ .+.
T Consensus 158 ~eLaeiY~~~~~f~kA~fClEE~ll~------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl--------~~~ 223 (289)
T KOG3060|consen 158 HELAEIYLSEGDFEKAAFCLEELLLI------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL--------NPK 223 (289)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--------ChH
Confidence 99999999999999999999998755 5777778888888888777 567899999999998 666
Q ss_pred HHHHHHHHHHHH
Q 004829 474 VASVFVRLADLY 485 (728)
Q Consensus 474 ~~~~~~~la~~~ 485 (728)
...+++.+-.+.
T Consensus 224 ~~ral~GI~lc~ 235 (289)
T KOG3060|consen 224 NLRALFGIYLCG 235 (289)
T ss_pred hHHHHHHHHHHH
Confidence 666666554443
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.04 E-value=1.7e-08 Score=94.33 Aligned_cols=167 Identities=17% Similarity=0.115 Sum_probs=140.7
Q ss_pred CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
.|....+ ..++..+...|+-+.+..+..++... ++.....+..+|...+..|+|..|+..++++..+.+.
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~---------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~ 132 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA---------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT 132 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc---------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC
Confidence 6776777 89999999999999999888886655 2334445566999999999999999999999988666
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
. +..+..+|.+|.+.|++++|...|.+++++. +....++.++|..|.-.|+++.|..++..+...
T Consensus 133 d-------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 133 D-------WEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred C-------hhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 5 6788899999999999999999999999983 223478999999999999999999999998876
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004829 631 LEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVV 670 (728)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al 670 (728)
.+....+..+|+.+...+|++++|.....+-+
T Consensus 198 --------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 198 --------PAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred --------CCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 44456688999999999999999988765544
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.03 E-value=5.4e-08 Score=102.74 Aligned_cols=222 Identities=17% Similarity=0.147 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 004829 395 DRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAV 474 (728)
Q Consensus 395 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 474 (728)
....++..+...|-...|+..|++. ..|.....||...|+..+|.....+-++ .+..
T Consensus 400 ~q~~laell~slGitksAl~I~Erl--------------emw~~vi~CY~~lg~~~kaeei~~q~le---------k~~d 456 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL--------------EMWDPVILCYLLLGQHGKAEEINRQELE---------KDPD 456 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH--------------HHHHHHHHHHHHhcccchHHHHHHHHhc---------CCCc
Confidence 4556788888888888888888763 3566777788888888888877766655 2233
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004829 475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ 554 (728)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 554 (728)
+..|..+ |++-.=-.+|+++.++... ..+.+...+|......++|.++.++++..+++.+-.
T Consensus 457 ~~lyc~L-------GDv~~d~s~yEkawElsn~--------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq--- 518 (777)
T KOG1128|consen 457 PRLYCLL-------GDVLHDPSLYEKAWELSNY--------ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQ--- 518 (777)
T ss_pred chhHHHh-------hhhccChHHHHHHHHHhhh--------hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccc---
Confidence 3444444 4444444566666666433 234456667777777888888888888888775544
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829 555 QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKE 634 (728)
Q Consensus 555 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 634 (728)
..+|+.+|.+..+.+++..|.++|..++.+ .+..+.+|++++.+|...++-.+|...+++|++.
T Consensus 519 ----~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc---- 582 (777)
T KOG1128|consen 519 ----LGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC---- 582 (777)
T ss_pred ----hhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc----
Confidence 457788888888888888888888888877 4556788888888888888888888888888887
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004829 635 YGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKL 677 (728)
Q Consensus 635 ~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~ 677 (728)
+.....++.|...+....|.+++|+..|.+.+.+.+...
T Consensus 583 ----n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 583 ----NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred ----CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 334444667777778888888888888888888776554
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.03 E-value=1.1e-08 Score=89.18 Aligned_cols=109 Identities=15% Similarity=0.045 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829 559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY 638 (728)
Q Consensus 559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 638 (728)
....+.+|..++..|++++|...|+-...+ ++.....+++||.++..+|++++|+..|.+++.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-------- 98 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-------- 98 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------
Confidence 455678999999999999999999999887 6667899999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 004829 639 HHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEK 688 (728)
Q Consensus 639 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~ 688 (728)
+|+.+..++++|.|+...|+.+.|...|+.++..+. .+|......
T Consensus 99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~-----~~~~~~~l~ 143 (157)
T PRK15363 99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG-----EVSEHQILR 143 (157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-----cChhHHHHH
Confidence 788888999999999999999999999999999872 456655444
No 124
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=99.02 E-value=0.00012 Score=82.29 Aligned_cols=431 Identities=14% Similarity=0.073 Sum_probs=268.9
Q ss_pred hhHHHHHHHHHHHHH-HcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829 263 LEQVMCLHVLAAIHC-SLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQ 341 (728)
Q Consensus 263 ~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 341 (728)
...+.++..+|.+++ ...+++.|..++++++.+... ..-....+.+.+.++.+|...+... |...+++.++..+.
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~---~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCER---HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 345778889999988 788999999999999988744 3333445667788899999988877 99999999988765
Q ss_pred HcCCCChHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829 342 VLGETDHRVGETCRYV-AEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLAS 420 (728)
Q Consensus 342 ~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 420 (728)
. .+.....++..+ ...+...+++..|++.++.........+++ .....+....+.+....+..+++++...++.
T Consensus 132 ~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~--~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 132 Y---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP--AVFVLASLSEALLHLRRGSPDDVLELLQRAI 206 (608)
T ss_pred c---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH--HHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 1 122233333333 333334479999999999999988755543 2234445556777888888999999998886
Q ss_pred HHHHhc----CCChhHHHHHHHHHH--HHHHhCCHHHHHHHHHHHHHHHHHhcCCC------------------------
Q 004829 421 MSMAAN----GHELDVASIDCSIGD--AYLSLARFDEAIFSYHKALTAFKSAKGEN------------------------ 470 (728)
Q Consensus 421 ~~~~~~----~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------ 470 (728)
...... ...+....++..+-. ++...|++..+...+++.-..........
T Consensus 207 ~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~ 286 (608)
T PF10345_consen 207 AQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGG 286 (608)
T ss_pred HHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCC
Confidence 655533 112223334443333 45677887787777666555444332110
Q ss_pred ----------CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC---CCCCcH--------------HHHHHHHH
Q 004829 471 ----------HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN---HGIPSE--------------EIASGLID 523 (728)
Q Consensus 471 ----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~--------------~~~~~~~~ 523 (728)
....+.+|..-|......+..++|.++++++++..++.. ...... -...++..
T Consensus 287 ~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y 366 (608)
T PF10345_consen 287 TPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFY 366 (608)
T ss_pred ceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHH
Confidence 001223444456667777888899999999999877644 000000 02234455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---CCCCcH
Q 004829 524 IAAIYQSMNELEQAVKLLNKALKIYGKTPGQ--QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS---GEKKSA 598 (728)
Q Consensus 524 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~ 598 (728)
++.+.+-.+++..|...+..+.......+.. ......+++..|..+...|+.+.|..+|.+..-..... ......
T Consensus 367 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E 446 (608)
T PF10345_consen 367 QIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE 446 (608)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence 6777788999999999999988887765432 23446678889999999999999999998554333221 122234
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHH-H
Q 004829 599 LFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG-PYHHDTLGVYSNLAGTYDA--MGRIDDAIEILEYVVGMR-E 674 (728)
Q Consensus 599 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~La~~~~~--~g~~~~A~~~~~~al~~~-~ 674 (728)
....+..++..++...+.......-+.+.++..+.... ..+.....++..+-.++.. .-...++...+.++++.. .
T Consensus 447 l~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~ 526 (608)
T PF10345_consen 447 LYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANN 526 (608)
T ss_pred HHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHH
Confidence 44556667777777665433322222233322211111 1122333333333333322 223458999999999887 3
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHhCChhHHH
Q 004829 675 EKLGTANPDVEDEKRRLAELLKEAGRVRNRK 705 (728)
Q Consensus 675 ~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~ 705 (728)
.. + .+--..-++.-++..+. .|+..+..
T Consensus 527 ~~-~-n~~l~~~~L~lm~~~lf-~~~~~e~~ 554 (608)
T PF10345_consen 527 KL-G-NSQLLAILLNLMGHRLF-EGDVGEQA 554 (608)
T ss_pred hh-c-cchHHHHHHHHHHHHHH-cCCHHHHH
Confidence 22 2 22333445556666666 78888766
No 125
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.02 E-value=2.3e-09 Score=84.77 Aligned_cols=76 Identities=26% Similarity=0.341 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004829 598 ALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMRE 674 (728)
Q Consensus 598 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~ 674 (728)
+..+.++.++|.+|..+|++++|+.+|++++++ .+..++.++..+.++.++|.+|..+|++++|+.++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 456789999999999999999999999999999 6667778888999999999999999999999999999999875
No 126
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=99.01 E-value=7.3e-08 Score=108.71 Aligned_cols=444 Identities=16% Similarity=0.111 Sum_probs=297.6
Q ss_pred HHHHHHHHHHHHHHH-HHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHH
Q 004829 239 PQKALELAKRAMKSF-EICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGD 317 (728)
Q Consensus 239 ~~~A~~~~~~Al~~~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~ 317 (728)
.++|++++..++... ...+.-...|+ +.+-++......+++.+|...=+.++++.+...+.++|. .+..+..++.
T Consensus 640 ~~dav~~~~~al~k~~~~~~~~~fnp~---~f~s~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd-~~Ks~~d~sv 715 (1236)
T KOG1839|consen 640 LDDAVKYATKALVKLVAVCGPYGFNPA---GFYSLAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPD-TMKSYGDLSV 715 (1236)
T ss_pred hHHHHHHHHHHHHHHHhhhcccccCcc---ccccCceEecCccccchhhhhhHhHHHHHHHHhccccch-hHHhccccce
Confidence 456777766655433 22222112232 233336777788898999998899998887777777765 3556777777
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 004829 318 TYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRR 397 (728)
Q Consensus 318 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~ 397 (728)
.++....+++|+.+-.+.+.+.-...+..+|..+..+.+.+..-...+ +-+.+.+..+++-........++..+.. .
T Consensus 716 ~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H 792 (1236)
T KOG1839|consen 716 FPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-H 792 (1236)
T ss_pred eeecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-H
Confidence 777777889999999999988777766667766655444443333333 6677777777777766666666555544 3
Q ss_pred HHHHHHHH---cCCHHHHHHHHHHHHHHH----HhcCCChh---------------------------HHHHHHHHHHHH
Q 004829 398 LMGLICDS---KGDYEAALEHYVLASMSM----AANGHELD---------------------------VASIDCSIGDAY 443 (728)
Q Consensus 398 ~lg~~~~~---~g~~~~A~~~~~~al~~~----~~~~~~~~---------------------------~~~~~~~la~~~ 443 (728)
.+..++.. .....++....-++..+- ......+. ...-...+..+.
T Consensus 793 ~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~ 872 (1236)
T KOG1839|consen 793 ALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETIL 872 (1236)
T ss_pred HHHHHhhcccccCCCccchHHHHhhhhhhhhhhccCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHh
Confidence 33332222 223222222222221000 00000010 000011111222
Q ss_pred HHhCCHHHHH---HHHHHHHHHHHHhcCC-----------------------CCH--HHHHHHHHHHHHHHHcCChHHHH
Q 004829 444 LSLARFDEAI---FSYHKALTAFKSAKGE-----------------------NHP--AVASVFVRLADLYHKIGKLRDSK 495 (728)
Q Consensus 444 ~~~g~~~~A~---~~~~~al~~~~~~~~~-----------------------~~~--~~~~~~~~la~~~~~~g~~~~A~ 495 (728)
...|...-+. ..+..-+....+.+.. ..| ..+.-....+......|.+.+|.
T Consensus 873 ~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~ 952 (1236)
T KOG1839|consen 873 LKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAY 952 (1236)
T ss_pred hhcccchhHHHHHHHHhhhcchhhhhccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhh
Confidence 2222211111 1111111111111000 011 22233445566667778888888
Q ss_pred HHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHHHHHHHcCC
Q 004829 496 SYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS-TIAGIEAQMGVMYYMTGN 574 (728)
Q Consensus 496 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~ 574 (728)
+ .-+++.++.... +..++..+..|..++.++...+++++|+.+-.++.-+.....+..+ .....+.+++...+..++
T Consensus 953 ~-~~~slnl~~~v~-~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~ 1030 (1236)
T KOG1839|consen 953 E-LPESLNLLNNVM-GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKN 1030 (1236)
T ss_pred h-hhhhhhHHHHhh-hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccC
Confidence 8 777777766544 5568899999999999999999999999999999888887766654 566778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004829 575 YSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYD 654 (728)
Q Consensus 575 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~ 654 (728)
...|...+.++..+..-..+..+|..+....+++.++...++++.|+.+++.|+.+.....++..-.....+..+++++.
T Consensus 1031 ~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~ 1110 (1236)
T KOG1839|consen 1031 LSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFE 1110 (1236)
T ss_pred ccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHh
Confidence 99999999999998776666666667888899999999999999999999999999999999888888999999999999
Q ss_pred HcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 004829 655 AMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRL 691 (728)
Q Consensus 655 ~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~L 691 (728)
.++++..|+...+....++...+|++|+........+
T Consensus 1111 s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~ 1147 (1236)
T KOG1839|consen 1111 SMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEWL 1147 (1236)
T ss_pred hhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHHH
Confidence 9999999999999999999999999998776554433
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.99 E-value=3.4e-08 Score=92.30 Aligned_cols=166 Identities=15% Similarity=0.164 Sum_probs=139.8
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829 429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP 508 (728)
Q Consensus 429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 508 (728)
.|....+ .+++..+...|+-+.+..+..+++.. ++.....+..+|......|+|..|+..+.++..+
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l---- 129 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL---- 129 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc----
Confidence 4555556 88899999999999999888887665 6666666777999999999999999999999988
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 509 NHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK 588 (728)
Q Consensus 509 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 588 (728)
.|..+.+|..+|.+|.+.|+++.|...|.+++++.+.. ..+..++|..|.-.|+++.|..++..+...
T Consensus 130 -----~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~-------p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 130 -----APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE-------PSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred -----CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC-------chhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 34467889999999999999999999999999998766 357789999999999999999999988764
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829 589 FRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEA 627 (728)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 627 (728)
+.....+..+++.+...+|++.+|...-.+-
T Consensus 198 --------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 198 --------PAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred --------CCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 2223468889999999999999998766543
No 128
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=7e-09 Score=98.68 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004829 516 EIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEK 595 (728)
Q Consensus 516 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 595 (728)
..+..+..-|.-+...++|++|+..|.+|+++.+.. +..|.+.+.+|.++|.++.|++.++.|+.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n-------AVyycNRAAAy~~Lg~~~~AVkDce~Al~i------- 144 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN-------AVYYCNRAAAYSKLGEYEDAVKDCESALSI------- 144 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-------chHHHHHHHHHHHhcchHHHHHHHHHHHhc-------
Confidence 456677888999999999999999999999998776 567889999999999999999999999998
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH
Q 004829 596 KSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRID 660 (728)
Q Consensus 596 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~ 660 (728)
++.+..+|..||.+|..+|++++|++.|++++++ +|+......+|..+-..++...
T Consensus 145 -Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 -DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred -ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence 7888999999999999999999999999999999 8888777888877777766655
No 129
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=5.2e-09 Score=99.57 Aligned_cols=121 Identities=19% Similarity=0.205 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004829 558 IAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGP 637 (728)
Q Consensus 558 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 637 (728)
.+..+..-|.-+.+.++|.+|+..|.+||++ .+..+..|.+.|.+|.++|.++.|++.++.|+.+
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------- 144 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------- 144 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-------
Confidence 3444566788889999999999999999998 5566789999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChh
Q 004829 638 YHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVR 702 (728)
Q Consensus 638 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~ 702 (728)
+|....+|..||.+|..+|++++|++.|++++++. |+......+|..+-..++...
T Consensus 145 -Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld--------P~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 -DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD--------PDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred -ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC--------CCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999964 666566666666666655554
No 130
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.97 E-value=2.7e-09 Score=84.34 Aligned_cols=77 Identities=30% Similarity=0.552 Sum_probs=69.5
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc
Q 004829 429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYG 506 (728)
Q Consensus 429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 506 (728)
+|..+.++.++|.+|..+|++++|+.+|++++++ .+..|++++..+.++.++|.++..+|++++|+.++++++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 3677889999999999999999999999999999 6666777888899999999999999999999999999999864
No 131
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.95 E-value=3.1e-05 Score=84.54 Aligned_cols=341 Identities=12% Similarity=0.009 Sum_probs=217.5
Q ss_pred CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhh
Q 004829 219 PALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVL 298 (728)
Q Consensus 219 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 298 (728)
+...+.+...+.-+...| .+.+|+++.-.|-. + ...+..+...+.-.+..++..--..+.+.. +.
T Consensus 344 ~~~~~lH~~Aa~w~~~~g-~~~eAI~hAlaA~d---------~-~~aa~lle~~~~~L~~~~~lsll~~~~~~l----P~ 408 (894)
T COG2909 344 ARLKELHRAAAEWFAEHG-LPSEAIDHALAAGD---------P-EMAADLLEQLEWQLFNGSELSLLLAWLKAL----PA 408 (894)
T ss_pred CchhHHHHHHHHHHHhCC-ChHHHHHHHHhCCC---------H-HHHHHHHHhhhhhhhcccchHHHHHHHHhC----CH
Confidence 344556666666666665 88888888766522 1 112333444455566666544333332221 10
Q ss_pred hcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-cCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829 299 EDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV-LGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMA 377 (728)
Q Consensus 299 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 377 (728)
..-..+| ......++......++.+|..+..++....... .+......+......|.+....|+++.|+++.+.+
T Consensus 409 ~~l~~~P----~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~a 484 (894)
T COG2909 409 ELLASTP----RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLA 484 (894)
T ss_pred HHHhhCc----hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 0011122 235667888888999999999998887664321 00012234455566778888999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004829 378 LDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYH 457 (728)
Q Consensus 378 l~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 457 (728)
+...+.... ...+.++..+|.+..-.|++++|..+..++.+..+..+.......+....+.++..+|+...| .-.
T Consensus 485 l~~L~~~~~---~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a--~~~ 559 (894)
T COG2909 485 LVQLPEAAY---RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARA--EQE 559 (894)
T ss_pred HHhcccccc---hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHH--HHH
Confidence 988776643 344567888999999999999999999999999888888777788888889999999933322 222
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Q 004829 458 KALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQA 537 (728)
Q Consensus 458 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 537 (728)
++............+.........+.++...-+++.+..-....+.+..... .......-.++.|+.+++..|++++|
T Consensus 560 ~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~--~~~~~~~~~~~~LA~l~~~~Gdl~~A 637 (894)
T COG2909 560 KAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT--PQPLLSRLALSMLAELEFLRGDLDKA 637 (894)
T ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc--cchhHHHHHHHHHHHHHHhcCCHHHH
Confidence 2322222221122333222333333333333347777777777666644322 11222333346899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829 538 VKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSA 585 (728)
Q Consensus 538 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 585 (728)
...+.+...+...........+.++.........+|+..+|.....+.
T Consensus 638 ~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 638 LAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 999999998887663233345555555556667889999988877763
No 132
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.95 E-value=4.2e-07 Score=86.53 Aligned_cols=183 Identities=17% Similarity=0.166 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCC
Q 004829 433 ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGI 512 (728)
Q Consensus 433 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 512 (728)
...++..|..++..|+|.+|+..|++.+..+. ..+....+.+.+|.+++..|++++|+..+++.+..+..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-----~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~----- 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYP-----NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN----- 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-----TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----
Confidence 45667778888888888888888888776633 35666777888888888888888888888888877544
Q ss_pred CcHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHH
Q 004829 513 PSEEIASGLIDIAAIYQSMN-----------ELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNT 581 (728)
Q Consensus 513 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 581 (728)
++....+++.+|.+++.+. ...+|+..|+..+..+|+.. -..+|...
T Consensus 75 -~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~---------------------y~~~A~~~ 132 (203)
T PF13525_consen 75 -SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE---------------------YAEEAKKR 132 (203)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST---------------------THHHHHHH
T ss_pred -CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch---------------------HHHHHHHH
Confidence 4556677777777765442 34577888888887776652 11223332
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH
Q 004829 582 LKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDD 661 (728)
Q Consensus 582 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 661 (728)
+..+-.. .+.--..+|..|+..|.|..|+..++.+++.+ |+.+....++..++..|.++|..+.
T Consensus 133 l~~l~~~-----------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 133 LAELRNR-----------LAEHELYIARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHH-----------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHH-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHH
Confidence 2222221 23445567899999999999999999998874 3466677789999999999999885
Q ss_pred HH
Q 004829 662 AI 663 (728)
Q Consensus 662 A~ 663 (728)
|.
T Consensus 197 a~ 198 (203)
T PF13525_consen 197 AD 198 (203)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 133
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.94 E-value=3.1e-08 Score=91.53 Aligned_cols=118 Identities=13% Similarity=0.040 Sum_probs=98.1
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004829 557 TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG 636 (728)
Q Consensus 557 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 636 (728)
..+.++..+|.++...|++++|+..|++++.+.. .+...+.++.++|.++...|++++|+.+|++++.+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-----~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~------ 101 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-----DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER------ 101 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 3466788999999999999999999999998732 23334578999999999999999999999999988
Q ss_pred CCChhHHHHHHHHHHHHH-------HcCChHHHHHHHHHHHHHHHHHcCCCChHHHHH
Q 004829 637 PYHHDTLGVYSNLAGTYD-------AMGRIDDAIEILEYVVGMREEKLGTANPDVEDE 687 (728)
Q Consensus 637 ~~~~~~~~~~~~La~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~ 687 (728)
+|.....+.++|.++. .+|+++.|+..+.+++..+++.++.+++....+
T Consensus 102 --~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~ 157 (168)
T CHL00033 102 --NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEA 157 (168)
T ss_pred --CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHH
Confidence 5665666667777776 899999999999999999999988777555433
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.94 E-value=1.8e-08 Score=89.50 Aligned_cols=111 Identities=15% Similarity=0.192 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHH
Q 004829 540 LLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINE 619 (728)
Q Consensus 540 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 619 (728)
.|++++...+.. ......+|.++...|++++|...+++++.. .+....++..+|.++...|++++
T Consensus 5 ~~~~~l~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~ 69 (135)
T TIGR02552 5 TLKDLLGLDSEQ-------LEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEE 69 (135)
T ss_pred hHHHHHcCChhh-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHH
Confidence 455555543332 456788999999999999999999999886 23346789999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 620 AADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 620 A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
|+.+|++++.+ +|.....++.+|.+|...|++++|+.+|++++++.
T Consensus 70 A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 70 AIDAYALAAAL--------DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 99999999998 77788899999999999999999999999999864
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.92 E-value=1.4e-08 Score=90.17 Aligned_cols=108 Identities=16% Similarity=0.146 Sum_probs=96.9
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004829 597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK 676 (728)
Q Consensus 597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~ 676 (728)
++........+|.++...|++++|...|++++.+ +|....++..+|.++..+|++++|+.+|++++.+
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 80 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL---- 80 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 4445677899999999999999999999999998 7778889999999999999999999999999884
Q ss_pred cCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829 677 LGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK 721 (728)
Q Consensus 677 ~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~ 721 (728)
+|.....++.+|.++...|++++|+ ..++.+++.+|....
T Consensus 81 ----~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 ----DPDDPRPYFHAAECLLALGEPESAL-KALDLAIEICGENPE 120 (135)
T ss_pred ----CCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhccccch
Confidence 4778889999999999999999999 999999998887543
No 136
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=1.5e-08 Score=101.17 Aligned_cols=258 Identities=17% Similarity=0.131 Sum_probs=148.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004829 401 LICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVR 480 (728)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 480 (728)
.-++..|+|..++..+.. ..............+.++++.+|+++..+.-... ...| ...+...
T Consensus 9 rn~fy~G~Y~~~i~e~~~------~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----------~~~~-~l~av~~ 71 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEASL------KSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK----------SSSP-ELQAVRL 71 (290)
T ss_dssp HHHHCTT-HHHHCHHHHC------HTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----------TSSC-CCHHHHH
T ss_pred HHHHHhhhHHHHHHHhhc------cCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc----------CCCh-hHHHHHH
Confidence 456678888888865541 1123344556677788888889987765533321 1122 2333444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHH
Q 004829 481 LADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAG 560 (728)
Q Consensus 481 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 560 (728)
++..+...++.+.++..++. .... .............|.++...|++++|+..+.+. . ...
T Consensus 72 la~y~~~~~~~e~~l~~l~~---~~~~----~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----------~--~lE 132 (290)
T PF04733_consen 72 LAEYLSSPSDKESALEELKE---LLAD----QAGESNEIVQLLAATILFHEGDYEEALKLLHKG----------G--SLE 132 (290)
T ss_dssp HHHHHCTSTTHHCHHHHHHH---CCCT----S---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----------T--CHH
T ss_pred HHHHHhCccchHHHHHHHHH---HHHh----ccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----------C--ccc
Confidence 55544433344444333322 1111 111112334555667777788888888777542 0 023
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCC
Q 004829 561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY--TINEAADLFEEARTILEKEYGPY 638 (728)
Q Consensus 561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~ 638 (728)
.......+|+..++++.|.+.++.+.++ .+ +. ..+....+++.+..| ++.+|...|++..+.
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~e--D~--~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-------- 196 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQI----DE--DS--ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-------- 196 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC----SC--CH--HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC--cH--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--------
Confidence 4445677888888888888777665432 21 11 122222333444444 578888888875443
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829 639 HHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ 718 (728)
Q Consensus 639 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~ 718 (728)
.+.....+..+|.++..+|++++|...+++++. .+|...+++.+++.+...+|+..++..+++..+...+|.
T Consensus 197 ~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 197 FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 334456778888888888888888888888775 446677788888888888888866555788877776664
No 137
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.88 E-value=4.2e-07 Score=86.54 Aligned_cols=183 Identities=16% Similarity=0.216 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829 266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE 345 (728)
Q Consensus 266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 345 (728)
+..++..|..++..|+|.+|+..|++++... +..+. ...+.+.+|.+++..|++++|+..+++.+...+.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~-a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~---- 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPY-APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN---- 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----
Confidence 5568889999999999999999999999876 33222 2346899999999999999999999999998644
Q ss_pred CChHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Q 004829 346 TDHRVGETCRYVAEAHVQSL-----------QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALE 414 (728)
Q Consensus 346 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 414 (728)
++....+++.+|.+++... ...+|+..|+..+..+|+..- ..+|..
T Consensus 75 -~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y----------------------~~~A~~ 131 (203)
T PF13525_consen 75 -SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY----------------------AEEAKK 131 (203)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT----------------------HHHHHH
T ss_pred -CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH----------------------HHHHHH
Confidence 6788889999999877653 234677777777777765532 112222
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHH
Q 004829 415 HYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDS 494 (728)
Q Consensus 415 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 494 (728)
.+..+. ..++.--..+|..|...|.|..|+..++.+++.+. +.+....++..++..|..+|..+.|
T Consensus 132 ~l~~l~---------~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp-----~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 132 RLAELR---------NRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP-----DTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHH---------HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST-----TSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHH---------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHhCChHHH
Confidence 222211 22334456688899999999999999999888744 3566778889999999999988754
Q ss_pred H
Q 004829 495 K 495 (728)
Q Consensus 495 ~ 495 (728)
.
T Consensus 198 ~ 198 (203)
T PF13525_consen 198 D 198 (203)
T ss_dssp H
T ss_pred H
Confidence 3
No 138
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.87 E-value=2.5e-05 Score=82.48 Aligned_cols=224 Identities=18% Similarity=0.226 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829 434 SIDCSIGDAYLSLARFDEAIFSYHK------ALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK 507 (728)
Q Consensus 434 ~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (728)
..|-.-|.+|.+..++++|+++|++ ++++.+-.+ .......-...|.-+...|+++.|+.+|-++-.+.
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~-- 736 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLI-- 736 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH--
Confidence 3455667777778888888888764 455544432 22333344456777788889998888887654331
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 508 PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAIS 587 (728)
Q Consensus 508 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 587 (728)
.-........++.+|+..++... +.......|-.++.-|...|+|+-|.++|.++-.
T Consensus 737 ---------------kaieaai~akew~kai~ildniq--------dqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~ 793 (1636)
T KOG3616|consen 737 ---------------KAIEAAIGAKEWKKAISILDNIQ--------DQKTASGYYGEIADHYANKGDFEIAEELFTEADL 793 (1636)
T ss_pred ---------------HHHHHHhhhhhhhhhHhHHHHhh--------hhccccccchHHHHHhccchhHHHHHHHHHhcch
Confidence 11122233445555555444322 1122223455677778888888888887776532
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHH-
Q 004829 588 KFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEIL- 666 (728)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~- 666 (728)
. ..--..|-+.|++++|..+-.++. + .......|..-+.-+...|+|.+|.++|
T Consensus 794 ~----------------~dai~my~k~~kw~da~kla~e~~-------~--~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 794 F----------------KDAIDMYGKAGKWEDAFKLAEECH-------G--PEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred h----------------HHHHHHHhccccHHHHHHHHHHhc-------C--chhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 1 111234556677777766555432 2 1233344555555555566655555444
Q ss_pred -----HHHHHHHHH---------HcCCCChHH-HHHHHHHHHHHHHhCChhHHHHHHHH
Q 004829 667 -----EYVVGMREE---------KLGTANPDV-EDEKRRLAELLKEAGRVRNRKSRSLV 710 (728)
Q Consensus 667 -----~~al~~~~~---------~~~~~~p~~-~~~~~~La~~~~~~g~~~~A~~~~l~ 710 (728)
.+++.++++ +.+..||+. .+.+..++.-|...|+...|...+++
T Consensus 849 ti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 849 TIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred EccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 233443332 223455654 56788999999999999999855554
No 139
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.87 E-value=6.1e-08 Score=84.68 Aligned_cols=105 Identities=12% Similarity=0.098 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC
Q 004829 430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN 509 (728)
Q Consensus 430 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 509 (728)
++.....+.+|..++..|++++|...|+-...+ +|.....+++||.++..+|+|.+|+..|.+++.+.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~---- 99 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK---- 99 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----
Confidence 556677889999999999999999999999888 89999999999999999999999999999999883
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829 510 HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 510 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 551 (728)
++.+..+.++|.+++..|+.+.|...|+.++......
T Consensus 100 -----~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 100 -----IDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred -----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 3456788999999999999999999999999887433
No 140
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.86 E-value=3.8e-08 Score=90.96 Aligned_cols=121 Identities=15% Similarity=0.038 Sum_probs=95.8
Q ss_pred CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
....+.+++.+|.++...|++++|+..|++++.+.. ++.....++.++|.++...|++++|+.+|++++.+.+.
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~------~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI------DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc------cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 445678889999999999999999999999998842 23445678999999999999999999999999988655
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004829 551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS 597 (728)
Q Consensus 551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 597 (728)
.......++.++..+|..+...|++++|+..+.+++..++......+
T Consensus 105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 43222334445555555556999999999999999988877654444
No 141
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.86 E-value=8.9e-07 Score=86.33 Aligned_cols=189 Identities=12% Similarity=0.066 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC
Q 004829 432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG 511 (728)
Q Consensus 432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 511 (728)
....++..|..+...|++++|+..|++++..+. ..+....+.+.+|.+|+..+++++|+..+++.++....
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-----~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~---- 101 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-----FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---- 101 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC----
Confidence 345677889999999999999999999988732 34566677899999999999999999999999999644
Q ss_pred CCcHHHHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcC
Q 004829 512 IPSEEIASGLIDIAAIYQSMN---------------E---LEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTG 573 (728)
Q Consensus 512 ~~~~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 573 (728)
++....+++.+|.++...+ + ..+|+..|++.++.+|+.. .
T Consensus 102 --~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~----y---------------- 159 (243)
T PRK10866 102 --HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ----Y---------------- 159 (243)
T ss_pred --CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh----h----------------
Confidence 6678888999998764443 2 2456677777777666541 0
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004829 574 NYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTY 653 (728)
Q Consensus 574 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~ 653 (728)
..+|...+...... .+.--..+|..|.+.|.|..|+.-++.+++-+ |+.+...++++.++..|
T Consensus 160 -a~~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay 222 (243)
T PRK10866 160 -TTDATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAY 222 (243)
T ss_pred -HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHH
Confidence 12222222222111 23344567899999999999999999998874 44677888999999999
Q ss_pred HHcCChHHHHHHHHH
Q 004829 654 DAMGRIDDAIEILEY 668 (728)
Q Consensus 654 ~~~g~~~~A~~~~~~ 668 (728)
..+|..++|..+...
T Consensus 223 ~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 223 RQLQLNAQADKVAKI 237 (243)
T ss_pred HHcCChHHHHHHHHH
Confidence 999999999876643
No 142
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=4.4e-06 Score=76.96 Aligned_cols=224 Identities=13% Similarity=0.048 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 004829 390 IEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGE 469 (728)
Q Consensus 390 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 469 (728)
...+..|...+.+|....+|++|...+.+|....+.+......+..+-..+.+...+..+.++..+|++|..++.+..
T Consensus 28 dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-- 105 (308)
T KOG1585|consen 28 DGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-- 105 (308)
T ss_pred hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--
Confidence 344555666777888889999999999999988888877788888999999999999999999999999999998873
Q ss_pred CCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004829 470 NHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYG 549 (728)
Q Consensus 470 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 549 (728)
.|+.+..-...|--....-++++|+.+|++++.+.+.. .........+...++++.+..++++|-..+.+-..+..
T Consensus 106 -spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~---dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~ 181 (308)
T KOG1585|consen 106 -SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED---DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAAD 181 (308)
T ss_pred -CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHH
Confidence 55555555555555667789999999999999998773 33445667788889999999999999988887666655
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829 550 KTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFE 625 (728)
Q Consensus 550 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 625 (728)
.. .........+.....+|+...+|..|..+++...++ +....+....++.+|-..| ..|+.++....+.
T Consensus 182 ~~-~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 182 KC-DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HH-hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 44 333334445555566777778999999999887665 2222333455666655444 4677777665544
No 143
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.83 E-value=2.7e-06 Score=96.41 Aligned_cols=398 Identities=17% Similarity=0.128 Sum_probs=268.9
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhH----HHHHH
Q 004829 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAK----FAGCM 313 (728)
Q Consensus 238 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~----~~~~~ 313 (728)
++.+|..+=+.++.+.+... +...|+....+..++..++....+++|+.+-.+++.+.-...+..++... ...++
T Consensus 680 ~~~~a~~~~qk~~d~~Erll-~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~ 758 (1236)
T KOG1839|consen 680 DFNQAAIQQQKVLDINERLL-GLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALM 758 (1236)
T ss_pred ccchhhhhhHhHHHHHHHHh-ccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHH
Confidence 66778777788888777665 45567777777777766777777899998888888776544444444321 11233
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHc---C--
Q 004829 314 QLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ---SLQFDEAEKICQMALDIHREN---T-- 385 (728)
Q Consensus 314 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~---~-- 385 (728)
.++. -+-+++.+..+++...+.++.++-..+.. ..+..++-. ..+...+....-++.+..... +
T Consensus 759 ~l~~-------~ei~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~ 830 (1236)
T KOG1839|consen 759 ELGV-------GEIALRSLKHVLKDNLRLLGADHIQTAAS-HALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTP 830 (1236)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHhhcccccCCCccchHHHHhhhhhhhhhhccCCC
Confidence 3332 26667777777777666666555444444 222222221 222222221111111110000 0
Q ss_pred CCC-------cHH-----------------HHHHHHHHHHHHHHcCCHHHHHHH---HHHHHHHHH-----hc-C-----
Q 004829 386 SPA-------SIE-----------------EAADRRLMGLICDSKGDYEAALEH---YVLASMSMA-----AN-G----- 427 (728)
Q Consensus 386 ~~~-------~~~-----------------~a~~~~~lg~~~~~~g~~~~A~~~---~~~al~~~~-----~~-~----- 427 (728)
.+. ++. .+.....+..+....|...-+... +..-+.... .. .
T Consensus 831 k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~f 910 (1236)
T KOG1839|consen 831 KPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSEF 910 (1236)
T ss_pred CcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCCCCC
Confidence 000 000 000001112222222222111111 111111110 00 0
Q ss_pred --------------CCh--hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCh
Q 004829 428 --------------HEL--DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKL 491 (728)
Q Consensus 428 --------------~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 491 (728)
..| ..+.-....|......|.+.+|.+ .-+++.++...++.-+|..+..|..|+.++...|++
T Consensus 911 ~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~ 989 (1236)
T KOG1839|consen 911 NDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDN 989 (1236)
T ss_pred CcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcch
Confidence 001 123344566777778889999999 888999998888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC-CCcHHHHHHHHHHHHH
Q 004829 492 RDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ-QSTIAGIEAQMGVMYY 570 (728)
Q Consensus 492 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~la~~~~ 570 (728)
++|+.+-.++.-+.++.. +.+++.....+.+++...+..+....|+..+.+++.+..-..+. .+..+.+..+++.++.
T Consensus 990 ~~Ai~~~~ka~ii~eR~~-g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~ 1068 (1236)
T KOG1839|consen 990 QEAIAQQRKACIISERVL-GKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLL 1068 (1236)
T ss_pred HHHHHhcccceeeechhc-cCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHh
Confidence 999999999998888766 77899999999999999999999999999999999887765555 4566777789999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004829 571 MTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVY 646 (728)
Q Consensus 571 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 646 (728)
..++++.|+.+++.|+..............+..+..+++++...+++..|+...+....++...++++|.......
T Consensus 1069 ~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~ 1144 (1236)
T KOG1839|consen 1069 GVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESS 1144 (1236)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhH
Confidence 9999999999999999988888777677788899999999999999999999999999999999999887765543
No 144
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=4.1e-06 Score=77.18 Aligned_cols=224 Identities=15% Similarity=0.144 Sum_probs=165.5
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC
Q 004829 430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN 509 (728)
Q Consensus 430 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 509 (728)
...+..|..-+.+|....+|++|...+.+|.+.++.. ......+.++-..+.+...+..+.++..+|+++..++.+.+
T Consensus 28 dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 28 DGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 3445556666778888999999999999999877654 22445677888889999999999999999999999998865
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 510 HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKF 589 (728)
Q Consensus 510 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 589 (728)
.++.+..-...+--....-++++|+.+|++++.+.... +....-...+...+.++.+...|.+|-..+.+-..+.
T Consensus 106 ----spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~-dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~ 180 (308)
T KOG1585|consen 106 ----SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED-DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAA 180 (308)
T ss_pred ----CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHH
Confidence 34444444444444566778999999999999998876 4444455667788999999999999999888877666
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004829 590 RTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILE 667 (728)
Q Consensus 590 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~ 667 (728)
......... ...+...-.+|+...+|..|..+|+...++ .+-..++...++.+|-..| ..|+.++....+.
T Consensus 181 ~~~~~y~~~--~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 181 DKCDAYNSQ--CKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHhhcccH--HHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 555443232 345555566777778999999999987765 2223566677777776666 4577777665543
No 145
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.83 E-value=2.9e-06 Score=82.73 Aligned_cols=191 Identities=10% Similarity=0.071 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004829 474 VASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPG 553 (728)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 553 (728)
....++..|..+...|+|++|+..|++++..... .+....+...+|.+|+..+++++|+..+++.++..|+.+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~- 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP- 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC-
Confidence 3455777889999999999999999999998543 466777889999999999999999999999999988764
Q ss_pred CCCcHHHHHHHHHHHHHHcC---------------CH---HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC
Q 004829 554 QQSTIAGIEAQMGVMYYMTG---------------NY---SDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY 615 (728)
Q Consensus 554 ~~~~~~~~~~~la~~~~~~g---------------~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 615 (728)
....+++.+|.++...+ +. .+|+..|++.++.+.. ...
T Consensus 104 ---~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~-----S~y---------------- 159 (243)
T PRK10866 104 ---NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN-----SQY---------------- 159 (243)
T ss_pred ---chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC-----Chh----------------
Confidence 34567778887764443 11 2344555555544211 111
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 004829 616 TINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELL 695 (728)
Q Consensus 616 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~ 695 (728)
..+|...+..+.. ..+.--+.+|..|.+.|.+..|+.-++.+++-+ |+.+...+++..+...|
T Consensus 160 -a~~A~~rl~~l~~-----------~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay 222 (243)
T PRK10866 160 -TTDATKRLVFLKD-----------RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAY 222 (243)
T ss_pred -HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHH
Confidence 1233322222222 233344678999999999999999999999866 67788899999999999
Q ss_pred HHhCChhHHHHHHHHHHH
Q 004829 696 KEAGRVRNRKSRSLVTFL 713 (728)
Q Consensus 696 ~~~g~~~~A~~~~l~~ll 713 (728)
..+|..++|. .....+.
T Consensus 223 ~~lg~~~~a~-~~~~~l~ 239 (243)
T PRK10866 223 RQLQLNAQAD-KVAKIIA 239 (243)
T ss_pred HHcCChHHHH-HHHHHHh
Confidence 9999999999 6665553
No 146
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.83 E-value=0.0002 Score=75.99 Aligned_cols=295 Identities=16% Similarity=0.233 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh-
Q 004829 394 ADRRLMGLICDSKGDYEAALEHYVL------ASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSA- 466 (728)
Q Consensus 394 ~~~~~lg~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~- 466 (728)
..|-..|.+|.+..++++|+++|.+ ++++.+. .-+..+...-...|.-+...|+++.|+.+|-++-.+.+..
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarf-afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaie 740 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF-AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIE 740 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh-hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence 3455667778888888999988765 3333322 2233444555566788888999999998886554332211
Q ss_pred --cC--------------CCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH
Q 004829 467 --KG--------------ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS 530 (728)
Q Consensus 467 --~~--------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 530 (728)
.+ .+.......|-.++.-|...|+|+.|.++|.++-.. ..-...|-+
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~-----------------~dai~my~k 803 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF-----------------KDAIDMYGK 803 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh-----------------HHHHHHHhc
Confidence 00 011111123344566677777777777776654211 122345666
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHhCCC---------
Q 004829 531 MNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTL------KSAISKFRTSGEK--------- 595 (728)
Q Consensus 531 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~--------- 595 (728)
.|++++|.++-.++. + +......|...+.-+-..|+|.+|.++| .++++++.+.+..
T Consensus 804 ~~kw~da~kla~e~~-------~-~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 804 AGKWEDAFKLAEECH-------G-PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred cccHHHHHHHHHHhc-------C-chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHH
Confidence 677777666555432 1 2223344555566667777777777665 3555555544332
Q ss_pred -CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------HHHHhcCCCChhHHHHHH--------
Q 004829 596 -KSALFGIALNQMGLACVQRYTINEAADLFEEART-------------------ILEKEYGPYHHDTLGVYS-------- 647 (728)
Q Consensus 596 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------------------~~~~~~~~~~~~~~~~~~-------- 647 (728)
++.........+|.-|...|+...|...|-++-+ +.+...|.+..... ++.
T Consensus 876 ~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v-~flwaksiggd 954 (1636)
T KOG3616|consen 876 HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHV-AFLWAKSIGGD 954 (1636)
T ss_pred hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHH-HHHHHHhhCcH
Confidence 2223445667778888888888887777655433 22222222111110 110
Q ss_pred HHHHHHHHcCChHHHHHHH------HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccc
Q 004829 648 NLAGTYDAMGRIDDAIEIL------EYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN 719 (728)
Q Consensus 648 ~La~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~ 719 (728)
.-..++.+.|-.+.|+.+. +-+..+.+-.. .......+..++..+...|++++|. +.+-..++.+..+
T Consensus 955 aavkllnk~gll~~~id~a~d~~afd~afdlari~~---k~k~~~vhlk~a~~ledegk~edas-khyveaiklntyn 1028 (1636)
T KOG3616|consen 955 AAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAA---KDKMGEVHLKLAMFLEDEGKFEDAS-KHYVEAIKLNTYN 1028 (1636)
T ss_pred HHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhh---hccCccchhHHhhhhhhccchhhhh-HhhHHHhhccccc
Confidence 0112344455555555442 22333322111 1234466788999999999999998 5544555555443
No 147
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.81 E-value=4.5e-08 Score=97.79 Aligned_cols=262 Identities=16% Similarity=0.125 Sum_probs=162.0
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 004829 360 AHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSI 439 (728)
Q Consensus 360 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 439 (728)
-++..|+|..++.-++ + .. . ...........+.+++..+|+++..+.-+.. .. .|. ..+...+
T Consensus 10 n~fy~G~Y~~~i~e~~--~--~~--~--~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~-------~~-~~~-l~av~~l 72 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS--L--KS--F--SPENKLERDFYQYRSYIALGQYDSVLSEIKK-------SS-SPE-LQAVRLL 72 (290)
T ss_dssp HHHCTT-HHHHCHHHH--C--HT--S--TCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T-------TS-SCC-CHHHHHH
T ss_pred HHHHhhhHHHHHHHhh--c--cC--C--CchhHHHHHHHHHHHHHHcCChhHHHHHhcc-------CC-Chh-HHHHHHH
Confidence 4567899988886555 1 11 1 1123344567788899999998876544321 12 222 2344555
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHH
Q 004829 440 GDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIAS 519 (728)
Q Consensus 440 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 519 (728)
+..+...++.+.++..++..+.- .............|.++...|++++|+..+.+. ...+
T Consensus 73 a~y~~~~~~~e~~l~~l~~~~~~------~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--------------~~lE 132 (290)
T PF04733_consen 73 AEYLSSPSDKESALEELKELLAD------QAGESNEIVQLLAATILFHEGDYEEALKLLHKG--------------GSLE 132 (290)
T ss_dssp HHHHCTSTTHHCHHHHHHHCCCT------S---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--------------TCHH
T ss_pred HHHHhCccchHHHHHHHHHHHHh------ccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--------------Cccc
Confidence 55554434444444433322211 112223445666778888899999998887653 1234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCCCc
Q 004829 520 GLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTG--NYSDSYNTLKSAISKFRTSGEKKS 597 (728)
Q Consensus 520 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~ 597 (728)
.......+|..+++++.|.+.++.+.++ ..+.. .+....+++.+..| ++.+|...|++..+.+
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~eD~~--l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~-------- 197 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQI-----DEDSI--LTQLAEAWVNLATGGEKYQDAFYIFEELSDKF-------- 197 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SCCHH--HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcHH--HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--------
Confidence 5556778999999999999888776433 22222 22223344445555 6889999988864321
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHH
Q 004829 598 ALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRI-DDAIEILEYVVGMREEK 676 (728)
Q Consensus 598 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~-~~A~~~~~~al~~~~~~ 676 (728)
.....+++.++.+++.+|+|++|...+++++.. +|....++.+++.+...+|+. +.+.+++.+....
T Consensus 198 ~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~---- 265 (290)
T PF04733_consen 198 GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS---- 265 (290)
T ss_dssp --SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH----
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh----
Confidence 123567899999999999999999999998876 677778999999999999998 5566676665543
Q ss_pred cCCCChHHHH
Q 004829 677 LGTANPDVED 686 (728)
Q Consensus 677 ~~~~~p~~~~ 686 (728)
.|.||...+
T Consensus 266 -~p~h~~~~~ 274 (290)
T PF04733_consen 266 -NPNHPLVKD 274 (290)
T ss_dssp -TTTSHHHHH
T ss_pred -CCCChHHHH
Confidence 356765543
No 148
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=5.6e-06 Score=83.55 Aligned_cols=407 Identities=13% Similarity=0.088 Sum_probs=244.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH---
Q 004829 266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV--- 342 (728)
Q Consensus 266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--- 342 (728)
...+++.|-+|+...++..|++.........+..... ......+..-..+....+.++|+.++.-.-.+....
T Consensus 100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~----~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~ 175 (696)
T KOG2471|consen 100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESS----SAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMK 175 (696)
T ss_pred hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4567888999999999999998877766543211111 112234455566666777888877655433322211
Q ss_pred -cCC----------CChHHH-----------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 004829 343 -LGE----------TDHRVG-----------ETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMG 400 (728)
Q Consensus 343 -~~~----------~~~~~~-----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg 400 (728)
.|. -.|..+ .+...-...|.+..+...+..-.+.++.+.... +..+...+
T Consensus 176 ~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s--------~~~l~LKs 247 (696)
T KOG2471|consen 176 LVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDS--------SMALLLKS 247 (696)
T ss_pred ccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCC--------cHHHHHHH
Confidence 111 111111 112222233444445555544444444443211 23466778
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcC--CChh--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHhcCCC-----
Q 004829 401 LICDSKGDYEAALEHYVLASMSMAANG--HELD--VASIDCSIGDAYLSLARFDEAIFSYHKALT-AFKSAKGEN----- 470 (728)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~----- 470 (728)
..++..|+|.+|.+.+...- +....+ ..|. ....++++|.+++.+|.|.-+..+|.+|+. .+.+.-.+-
T Consensus 248 q~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 89999999999998875431 111111 1122 345578999999999999999999999996 444432211
Q ss_pred ----CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCC-------------
Q 004829 471 ----HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNE------------- 533 (728)
Q Consensus 471 ----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------- 533 (728)
......++++.|..|...|++-.|.++|.++...+.. .+..|..++.++....+
T Consensus 327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~---------nPrlWLRlAEcCima~~~~l~ee~~~s~s~ 397 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR---------NPRLWLRLAECCIMALQKGLLEEGNSSLSR 397 (696)
T ss_pred eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc---------CcHHHHHHHHHHHHHhhhhhhhhccCCccc
Confidence 1234578899999999999999999999999999866 34567777776643210
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHhcC--------------------------
Q 004829 534 ------------------------------------LEQAVKLLNKALKIYGKT-------------------------- 551 (728)
Q Consensus 534 ------------------------------------~~~A~~~~~~al~~~~~~-------------------------- 551 (728)
.+-|.-+++.++-+.++.
T Consensus 398 ~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~ 477 (696)
T KOG2471|consen 398 SEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGN 477 (696)
T ss_pred ccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCC
Confidence 122444455555443111
Q ss_pred --------CCC--------CC--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 004829 552 --------PGQ--------QS--------TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQM 607 (728)
Q Consensus 552 --------~~~--------~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 607 (728)
.++ .+ ....++...+.+-+.+|+.-.|+....+.++.. ....++..|
T Consensus 478 ~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~---------~lS~~~kfL 548 (696)
T KOG2471|consen 478 TTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLA---------DLSKIYKFL 548 (696)
T ss_pred CCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhh---------hhhhHHHHH
Confidence 000 00 134456677888889999999999998888762 233444444
Q ss_pred H-----HHHHHcCCHHHHHHHHHHHH------H------HHHHh------cC---CC-------Chh--HHHHHHHHHHH
Q 004829 608 G-----LACVQRYTINEAADLFEEAR------T------ILEKE------YG---PY-------HHD--TLGVYSNLAGT 652 (728)
Q Consensus 608 a-----~~~~~~g~~~~A~~~~~~al------~------~~~~~------~~---~~-------~~~--~~~~~~~La~~ 652 (728)
| .++..+.+..+|..++.--+ . -+..- .. .. .++ ....+++||.+
T Consensus 549 GHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a 628 (696)
T KOG2471|consen 549 GHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAA 628 (696)
T ss_pred HHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHH
Confidence 4 44555677777777665411 0 01110 00 01 111 12367899999
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 004829 653 YDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLV 710 (728)
Q Consensus 653 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~ 710 (728)
|..+|++++|..++..|..+..+. . | ..+...-..+-...|+...|. ..++
T Consensus 629 ~alq~~~dqAk~ll~~aatl~hs~---v-~--~~A~~lavyidL~~G~~q~al-~~lk 679 (696)
T KOG2471|consen 629 LALQGHHDQAKSLLTHAATLLHSL---V-N--VQATVLAVYIDLMLGRSQDAL-ARLK 679 (696)
T ss_pred HHHhcccHHHHHHHHHHHHhhhcc---c-c--HHHHHHHHHHHHhcCCCcchH-HHHH
Confidence 999999999999999999876321 1 1 222222333556789999998 4443
No 149
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.80 E-value=0.0002 Score=78.52 Aligned_cols=339 Identities=10% Similarity=-0.026 Sum_probs=211.5
Q ss_pred hhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004829 263 LEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV 342 (728)
Q Consensus 263 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 342 (728)
+.....+..-+..+...|...+|+.+.-.|-+ +......+-..+.-....++..--..+.+.. +.-
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d----------~~~aa~lle~~~~~L~~~~~lsll~~~~~~l----P~~ 409 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAGD----------PEMAADLLEQLEWQLFNGSELSLLLAWLKAL----PAE 409 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhCCC----------HHHHHHHHHhhhhhhhcccchHHHHHHHHhC----CHH
Confidence 44455666677777788888888876655432 2222333444555555555544322222211 000
Q ss_pred cCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 343 LGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP-ASIEEAADRRLMGLICDSKGDYEAALEHYVLASM 421 (728)
Q Consensus 343 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 421 (728)
. -..........++......++.+|..++.++....+..... .....+...-..|.+....|+++.|+++.+.++.
T Consensus 410 ~---l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~ 486 (894)
T COG2909 410 L---LASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV 486 (894)
T ss_pred H---HhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 0 01122334455677778899999999999988776653221 2223344455567888899999999999999887
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChH--HHHHHHH
Q 004829 422 SMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLR--DSKSYCE 499 (728)
Q Consensus 422 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~ 499 (728)
....... ...+.++..+|.+..-.|++++|..+...+.++.+.. +.......+....+.++..+|+.. +....+.
T Consensus 487 ~L~~~~~-~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~--~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~ 563 (894)
T COG2909 487 QLPEAAY-RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH--DVYHLALWSLLQQSEILEAQGQVARAEQEKAFN 563 (894)
T ss_pred hcccccc-hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6544332 2345678899999999999999999999999998876 234555667777789999999432 3333333
Q ss_pred HHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Q 004829 500 NALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSY 579 (728)
Q Consensus 500 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 579 (728)
..-...... ...+.....++..+...+.+ ++.+..-....+.+.............++..|+.+++..|++++|.
T Consensus 564 ~~~~q~l~q--~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~ 638 (894)
T COG2909 564 LIREQHLEQ--KPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKAL 638 (894)
T ss_pred HHHHHHhhh--cccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHH
Confidence 222221110 01122233334444444443 6777766667766655443333333444568999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829 580 NTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEA 627 (728)
Q Consensus 580 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 627 (728)
..+.+....+.... .+....+.++.........+|++++|.....+.
T Consensus 639 ~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 639 AQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 99999988876654 333333444444455666789999998887773
No 150
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.80 E-value=5.2e-07 Score=83.66 Aligned_cols=115 Identities=15% Similarity=0.200 Sum_probs=92.6
Q ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004829 556 STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEY 635 (728)
Q Consensus 556 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 635 (728)
...+..++.+|..+...|++++|+.+|++++..... ......++..+|.++...|++++|+.+|++++.+
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 101 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED-----PNDRSYILYNMGIIYASNGEHDKALEYYHQALEL----- 101 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 344667889999999999999999999999987322 2223578999999999999999999999999998
Q ss_pred CCCChhHHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHHHcCCCChH
Q 004829 636 GPYHHDTLGVYSNLAGTYDAMGR-------IDDAIEILEYVVGMREEKLGTANPD 683 (728)
Q Consensus 636 ~~~~~~~~~~~~~La~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~p~ 683 (728)
+|.....+..+|.+|...|+ ++.|+..++++++.+++.+..++.+
T Consensus 102 ---~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 102 ---NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred ---CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 77777888888999887655 6777777777777777766544443
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.75 E-value=9.7e-08 Score=99.12 Aligned_cols=113 Identities=11% Similarity=0.031 Sum_probs=97.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004829 562 EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHD 641 (728)
Q Consensus 562 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 641 (728)
+...|..++..|+|++|+.+|.+++++ .+....++..+|.+|..+|++++|+..+++++.+ .|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 345688899999999999999999987 3344678999999999999999999999999999 888
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHh
Q 004829 642 TLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEA 698 (728)
Q Consensus 642 ~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~ 698 (728)
...+++.+|.+|..+|++++|+.+|++++.+. |....+...++.+...+
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~--------P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASLA--------PGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999953 55555666666665554
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.74 E-value=7.4e-07 Score=79.95 Aligned_cols=134 Identities=21% Similarity=0.222 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC
Q 004829 223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ 302 (728)
Q Consensus 223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 302 (728)
...+..+...+..+ ++..+...+++.+.- ....+....+.+.+|.+++..|++++|+..|+.++... +
T Consensus 12 ~~~y~~~~~~~~~~-~~~~~~~~~~~l~~~------~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~ 79 (145)
T PF09976_consen 12 SALYEQALQALQAG-DPAKAEAAAEQLAKD------YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----P 79 (145)
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHHHH------CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----C
Confidence 34555566666675 888887777777664 23335567788899999999999999999999998753 2
Q ss_pred chhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004829 303 DHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMAL 378 (728)
Q Consensus 303 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 378 (728)
+. .....+.+.||.++...|++++|+..++.. ...+....++..+|.+|...|++++|+..|++++
T Consensus 80 d~-~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 80 DP-ELKPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 22 223446889999999999999999998662 1245666788899999999999999999999874
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.73 E-value=1.8e-07 Score=80.88 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004829 602 IALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTAN 681 (728)
Q Consensus 602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 681 (728)
.+++.+|..+...|++++|+..|.+++.. .++++....+++.+|.++...|++++|+.+|++++... +.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 46788999999999999999999999886 22334446788999999999999999999999999854 556
Q ss_pred hHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829 682 PDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNL 720 (728)
Q Consensus 682 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~ 720 (728)
+....++..+|.++..+|++++|. ..++.+++..|...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAK-ATLQQVIKRYPGSS 110 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHH-HHHHHHHHHCcCCh
Confidence 666788999999999999999999 99999999988754
No 154
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=5e-06 Score=77.85 Aligned_cols=255 Identities=17% Similarity=0.124 Sum_probs=146.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004829 401 LICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVR 480 (728)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 480 (728)
+-++..|.|..++..-.+.. ..+........+...|..+|.+...+.-...+ ......+...
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~-------~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~-----------~~~~lqAvr~ 77 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFS-------SSKTDVELDVYMYRAYLALGQYQIVISEIKEG-----------KATPLQAVRL 77 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhc-------cccchhHHHHHHHHHHHHcccccccccccccc-----------cCChHHHHHH
Confidence 34566777777766544331 11233455566777888888776544332221 1111222333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHH
Q 004829 481 LADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAG 560 (728)
Q Consensus 481 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 560 (728)
++.....-++.++-+.-+.+-+... ........+..-|.+|...|++++|+........+ .
T Consensus 78 ~a~~~~~e~~~~~~~~~l~E~~a~~-------~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l------------E 138 (299)
T KOG3081|consen 78 LAEYLELESNKKSILASLYELVADS-------TDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL------------E 138 (299)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHhh-------ccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH------------H
Confidence 3443333333333322222222111 01112233444566777888888888777653222 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcC
Q 004829 561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR----YTINEAADLFEEARTILEKEYG 636 (728)
Q Consensus 561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~ 636 (728)
+...-..++.++.+++-|...++++.++- . -.++..||.+|... +++.+|.-+|++.-+.
T Consensus 139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~id--------e--d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k------ 202 (299)
T KOG3081|consen 139 AAALNVQILLKMHRFDLAEKELKKMQQID--------E--DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK------ 202 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccc--------h--HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc------
Confidence 22233456677777777777777776651 1 23555566555543 3566666666665443
Q ss_pred CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhc
Q 004829 637 PYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSN 716 (728)
Q Consensus 637 ~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~ 716 (728)
.+.....+...|.|+..+|+|++|...++.++. ..+..++++.++..+-...|...++..+.+.++...+
T Consensus 203 --~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--------kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 203 --TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD--------KDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred --cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 233445677788888888888888888888887 4466677777888888888888888877788777766
Q ss_pred cc
Q 004829 717 SQ 718 (728)
Q Consensus 717 ~~ 718 (728)
|+
T Consensus 273 p~ 274 (299)
T KOG3081|consen 273 PE 274 (299)
T ss_pred Cc
Confidence 65
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.72 E-value=3e-07 Score=79.50 Aligned_cols=104 Identities=17% Similarity=0.186 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829 560 GIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYH 639 (728)
Q Consensus 560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 639 (728)
.+++.+|..+...|++++|+..|.+++... ...+....+++.+|.++...|++++|+.+|++++.. .+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence 467889999999999999999999998762 112223568889999999999999999999999987 2334
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 640 HDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 640 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
+....++..+|.++..+|++++|+.++++++...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 4456789999999999999999999999999853
No 156
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.71 E-value=2e-06 Score=77.14 Aligned_cols=123 Identities=17% Similarity=0.198 Sum_probs=98.2
Q ss_pred HhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHH
Q 004829 445 SLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDI 524 (728)
Q Consensus 445 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 524 (728)
..++...+...+++.+.-. ++.+....+.+.+|.+++..|++++|...|+.++... .++.....+...+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~-----~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~------~d~~l~~~a~l~L 91 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY-----PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA------PDPELKPLARLRL 91 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC------CCHHHHHHHHHHH
Confidence 5788888877777766651 2345567888999999999999999999999999863 2344556788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829 525 AAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAI 586 (728)
Q Consensus 525 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 586 (728)
+.++...|++++|+..++.. ........++..+|.+|...|++++|+..|++|+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~--------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI--------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc--------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999999999998651 2233445677789999999999999999999874
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.70 E-value=2.1e-07 Score=96.65 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=98.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHH
Q 004829 521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALF 600 (728)
Q Consensus 521 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 600 (728)
+...|..++..|+|++|+.+|.+++++.+.. ..++..+|.+|..+|++++|+..+++++.+ .+..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~~ 69 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-------AELYADRAQANIKLGNFTEAVADANKAIEL--------DPSL 69 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCC
Confidence 4567888999999999999999999986655 568899999999999999999999999998 3445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004829 601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM 656 (728)
Q Consensus 601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~ 656 (728)
..+++.+|.+|..+|++++|+..|++++.+ +|....+...++.+...+
T Consensus 70 ~~a~~~lg~~~~~lg~~~eA~~~~~~al~l--------~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 70 AKAYLRKGTACMKLEEYQTAKAALEKGASL--------APGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999 777677777777775554
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.67 E-value=3.1e-07 Score=85.11 Aligned_cols=110 Identities=19% Similarity=0.259 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004829 470 NHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYG 549 (728)
Q Consensus 470 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 549 (728)
..+..+.+++.+|..+...|++++|+.+|++++.+... .+....++..+|.++...|++++|+.++++++.+.+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED------PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc------cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 35677888999999999999999999999999988432 333567899999999999999999999999999865
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHh
Q 004829 550 KTPGQQSTIAGIEAQMGVMYYMTGN-------YSDSYNTLKSAISKFRTS 592 (728)
Q Consensus 550 ~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~ 592 (728)
.. ...+..+|.++...|+ ++.|+..++++++.++..
T Consensus 104 ~~-------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a 146 (172)
T PRK02603 104 KQ-------PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQA 146 (172)
T ss_pred cc-------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHH
Confidence 44 4456677777777655 555555555555554443
No 159
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.1e-07 Score=91.49 Aligned_cols=140 Identities=10% Similarity=0.141 Sum_probs=117.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcH-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004829 563 AQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSA-------LFGIALNQMGLACVQRYTINEAADLFEEARTILEKEY 635 (728)
Q Consensus 563 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 635 (728)
...|..|++.|+|..|...|++|+..+......... ....++.+++.++.++++|.+|+....++|.+
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~----- 286 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL----- 286 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-----
Confidence 356889999999999999999999987643322211 12357899999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhh
Q 004829 636 GPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDS 715 (728)
Q Consensus 636 ~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~ 715 (728)
.|....+++..|.++..+|+++.|+..|++++++. |.+..+...|..+-.+..++.+...+.+..++..
T Consensus 287 ---~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--------P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 287 ---DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--------PSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred ---CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88899999999999999999999999999999964 7778888888888888877777765778887776
Q ss_pred ccc
Q 004829 716 NSQ 718 (728)
Q Consensus 716 ~~~ 718 (728)
...
T Consensus 356 ~~~ 358 (397)
T KOG0543|consen 356 LAE 358 (397)
T ss_pred ccc
Confidence 554
No 160
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.61 E-value=1.5e-05 Score=90.21 Aligned_cols=258 Identities=12% Similarity=0.039 Sum_probs=194.4
Q ss_pred cCCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHH
Q 004829 206 NGAEDPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEA 285 (728)
Q Consensus 206 ~~~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 285 (728)
...++|......+|+.+-.|.......+..+ +.++|.+.+++||....-. +...-.+.+.+|.++-..| |.-+..
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~Lels-EiekAR~iaerAL~tIN~R-EeeEKLNiWiA~lNlEn~y---G~eesl 1516 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELS-EIEKARKIAERALKTINFR-EEEEKLNIWIAYLNLENAY---GTEESL 1516 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhh-hhHHHHHHHHHHhhhCCcc-hhHHHHHHHHHHHhHHHhh---CcHHHH
Confidence 3467888888999999999999998999997 8999999999999864110 0111144556666665555 666778
Q ss_pred HHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC
Q 004829 286 IPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSL 365 (728)
Q Consensus 286 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 365 (728)
.+.|++|.+.+. ...++..|..+|...+++++|.++|+..++-+. .....|..+|..++.+.
T Consensus 1517 ~kVFeRAcqycd----------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~n 1578 (1710)
T KOG1070|consen 1517 KKVFERACQYCD----------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQN 1578 (1710)
T ss_pred HHHHHHHHHhcc----------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhccc
Confidence 889999887641 123589999999999999999999999998853 45678999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 004829 366 QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLS 445 (728)
Q Consensus 366 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 445 (728)
+-+.|..++.+|+...|+.. + .......|.+-++.|+.+.+...|+..+.. .|.....|.-+...-..
T Consensus 1579 e~~aa~~lL~rAL~~lPk~e---H---v~~IskfAqLEFk~GDaeRGRtlfEgll~a------yPKRtDlW~VYid~eik 1646 (1710)
T KOG1070|consen 1579 EAEAARELLKRALKSLPKQE---H---VEFISKFAQLEFKYGDAERGRTLFEGLLSA------YPKRTDLWSVYIDMEIK 1646 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhh---h---HHHHHHHHHHHhhcCCchhhHHHHHHHHhh------CccchhHHHHHHHHHHc
Confidence 99999999999999887732 2 345677889999999999999999887654 56667788888888999
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHH
Q 004829 446 LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKI-GKLRDSKSYCENALKI 504 (728)
Q Consensus 446 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 504 (728)
.|+...+..+|++++.+ .-.+..+..++..-.-|.+. |+-......=.+|.+.
T Consensus 1647 ~~~~~~vR~lfeRvi~l------~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EY 1700 (1710)
T KOG1070|consen 1647 HGDIKYVRDLFERVIEL------KLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEY 1700 (1710)
T ss_pred cCCHHHHHHHHHHHHhc------CCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 99999999999999987 22455555555444444433 4433333333334433
No 161
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=8.4e-07 Score=88.46 Aligned_cols=137 Identities=10% Similarity=0.088 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829 519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS--------TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR 590 (728)
Q Consensus 519 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 590 (728)
......|..|++.|+|..|...|++|+..+......+. ....++.+++.+|.++++|.+|+..+.++|.+
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-- 286 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-- 286 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--
Confidence 34456788999999999999999999998875544332 23456889999999999999999999999988
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH-HHHHHHH
Q 004829 591 TSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDA-IEILEYV 669 (728)
Q Consensus 591 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A-~~~~~~a 669 (728)
.+.+..+++..|.++..+|+|+.|+..|++++++ .|....+...|..+-.+...+.+. .++|..+
T Consensus 287 ------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 287 ------DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred ------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999999999999999999 788777878887776655444333 4555555
Q ss_pred HH
Q 004829 670 VG 671 (728)
Q Consensus 670 l~ 671 (728)
+.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 44
No 162
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=3.9e-05 Score=70.38 Aligned_cols=197 Identities=13% Similarity=0.182 Sum_probs=131.8
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 004829 364 SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAY 443 (728)
Q Consensus 364 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 443 (728)
.+.+++|.++|.++-.+++- ..++..|=..|.++.......+...+.+..|...+.+|
T Consensus 27 ~~k~eeAadl~~~Aan~ykl----------------------aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy 84 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANMYKL----------------------AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY 84 (288)
T ss_pred CcchHHHHHHHHHHHHHHHH----------------------HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh
Confidence 45788888888887665432 22333444444455444444555566667777777776
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHH
Q 004829 444 LSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKI-GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLI 522 (728)
Q Consensus 444 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 522 (728)
.+. +..+|+.+++++++++... +.....+.-+..+|.+|..- .++++|+.+|+++-+.+..- ......-.++.
T Consensus 85 kk~-~~~eAv~cL~~aieIyt~~--Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---es~ssANKC~l 158 (288)
T KOG1586|consen 85 KKV-DPEEAVNCLEKAIEIYTDM--GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---ESVSSANKCLL 158 (288)
T ss_pred hcc-ChHHHHHHHHHHHHHHHhh--hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---hhhhhHHHHHH
Confidence 554 9999999999999998776 22444556677899999875 89999999999999998652 12233445667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 523 DIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK 588 (728)
Q Consensus 523 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 588 (728)
..+..-...++|.+|+..|++.....-+..-.....-..+..-|.+++-..+.-.+...+++..++
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 777888889999999999998776544432222223334455677777767766665555544444
No 163
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=4e-06 Score=85.34 Aligned_cols=152 Identities=13% Similarity=0.077 Sum_probs=128.0
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC
Q 004829 430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN 509 (728)
Q Consensus 430 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 509 (728)
+....+++..+..++..|++++|+..++..+.. .|++...+...+.++...++..+|.+.+++++...
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~---- 370 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALALD---- 370 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----
Confidence 455668889999999999999999999997776 88888889999999999999999999999999983
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 510 HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKF 589 (728)
Q Consensus 510 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 589 (728)
|.......++|..|...|++.+|+..++..+.-.++. +..|..|+..|..+|+-.+|...
T Consensus 371 -----P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d-------p~~w~~LAqay~~~g~~~~a~~A-------- 430 (484)
T COG4783 371 -----PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED-------PNGWDLLAQAYAELGNRAEALLA-------- 430 (484)
T ss_pred -----CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-------chHHHHHHHHHHHhCchHHHHHH--------
Confidence 3446778899999999999999999999887665544 46788999999999987766433
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 590 RTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 590 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
.+..|...|++++|+..+..+.+.
T Consensus 431 -----------------~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 431 -----------------RAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -----------------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 355566789999999999988776
No 164
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=2e-06 Score=87.47 Aligned_cols=148 Identities=22% Similarity=0.159 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 004829 394 ADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPA 473 (728)
Q Consensus 394 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 473 (728)
.+++..+..++..|+++.|+..+...+.. .|+....+...+.++...++..+|.+.+++++.+ .|.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--------~P~ 372 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--------DPN 372 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCC
Confidence 46788899999999999999999885533 5677788889999999999999999999999998 888
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004829 474 VASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPG 553 (728)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 553 (728)
......++|.+|...|++.+|+..++..+.- .|+.+..|..|+..|..+|+..+|...
T Consensus 373 ~~~l~~~~a~all~~g~~~eai~~L~~~~~~---------~p~dp~~w~~LAqay~~~g~~~~a~~A------------- 430 (484)
T COG4783 373 SPLLQLNLAQALLKGGKPQEAIRILNRYLFN---------DPEDPNGWDLLAQAYAELGNRAEALLA------------- 430 (484)
T ss_pred ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc---------CCCCchHHHHHHHHHHHhCchHHHHHH-------------
Confidence 8889999999999999999999999988765 455678899999999999998776543
Q ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 554 QQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK 588 (728)
Q Consensus 554 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 588 (728)
.+..|+..|++++|+..+..+.+.
T Consensus 431 -----------~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 431 -----------RAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -----------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 466677889999999999888765
No 165
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=1.7e-05 Score=72.64 Aligned_cols=187 Identities=16% Similarity=0.108 Sum_probs=131.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Q 004829 525 AAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIAL 604 (728)
Q Consensus 525 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 604 (728)
|..|...+++..|-..|.++-++..+. +..+..+..|...+.+|.+. +..+|+.+++++++++...+.-. .-+..+
T Consensus 41 an~yklaK~w~~AG~aflkaA~~h~k~-~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~--~aAk~~ 116 (288)
T KOG1586|consen 41 ANMYKLAKNWSAAGDAFLKAADLHLKA-GSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFT--MAAKHH 116 (288)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHH--HHHhhh
Confidence 344444556666666666666666655 55566667777777776554 99999999999999998876532 235567
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH
Q 004829 605 NQMGLACVQR-YTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPD 683 (728)
Q Consensus 605 ~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~ 683 (728)
..+|.+|..- .++++|+.+|+++-+.+...-. ....-.++...|..-...++|.+|+..|+++.... -+++.
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees--~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s-----~~n~L 189 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES--VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS-----LDNNL 189 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccchH
Confidence 7889998865 8999999999999998754311 22233466677787888999999999999887632 12232
Q ss_pred ----HHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccccC
Q 004829 684 ----VEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLKED 723 (728)
Q Consensus 684 ----~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~~~ 723 (728)
.-+-++.-|.++...++.-.+. ..++...+.+|...+..
T Consensus 190 LKys~KdyflkAgLChl~~~D~v~a~-~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 190 LKYSAKDYFLKAGLCHLCKADEVNAQ-RALEKYQELDPAFTDSR 232 (288)
T ss_pred HHhHHHHHHHHHHHHhHhcccHHHHH-HHHHHHHhcCCcccccH
Confidence 2233445566666667877777 88899999998876643
No 166
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=2.1e-06 Score=86.48 Aligned_cols=343 Identities=17% Similarity=0.142 Sum_probs=193.1
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhh
Q 004829 220 ALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLE 299 (728)
Q Consensus 220 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 299 (728)
+.+..++-+++.++..| ++.+|.+.....--....-+-.++.......++++|.+++++|.|.-+..+|.+|++-....
T Consensus 238 ~s~~~l~LKsq~eY~~g-n~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHG-NHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred CCcHHHHHHHHHHHHhc-chHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 45677888888999997 99999887755421111111112223344556799999999999999999999999622111
Q ss_pred --cC--Cc-----hhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCC---H
Q 004829 300 --DG--QD-----HALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQ---F 367 (728)
Q Consensus 300 --~~--~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~ 367 (728)
.+ +. .......++++.|..|...|+.-.|.++|.++...+.. ....|..+|.++....+ .
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~--------nPrlWLRlAEcCima~~~~l~ 388 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR--------NPRLWLRLAECCIMALQKGLL 388 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc--------CcHHHHHHHHHHHHHhhhhhh
Confidence 01 00 00113456899999999999999999999999999643 34678888888764321 1
Q ss_pred HHHHHHHHH--HHH-----------HHHHcCCC---CcHHHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHh-
Q 004829 368 DEAEKICQM--ALD-----------IHRENTSP---ASIEEAADRRLMGLICDSKGDY-----EAALEHYVLASMSMAA- 425 (728)
Q Consensus 368 ~~A~~~~~~--al~-----------~~~~~~~~---~~~~~a~~~~~lg~~~~~~g~~-----~~A~~~~~~al~~~~~- 425 (728)
++......+ ... +..++... ........-..++.++.+.+-+ ..--..+.-+...-+.
T Consensus 389 ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g 468 (696)
T KOG2471|consen 389 EEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEG 468 (696)
T ss_pred hhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccC
Confidence 111111110 000 00000000 0000000011122222211100 0000000000000000
Q ss_pred -----------------cC--------CC--------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 004829 426 -----------------NG--------HE--------LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP 472 (728)
Q Consensus 426 -----------------~~--------~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 472 (728)
.+ .. .....++.+.+.+-..+|+.-.|+..-.+.++. +
T Consensus 469 ~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~---------~ 539 (696)
T KOG2471|consen 469 SSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL---------A 539 (696)
T ss_pred CCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh---------h
Confidence 00 00 123566778888999999999999999998885 4
Q ss_pred HHHHHHHHHHHH-----HHHcCChHHHHHHHHHHHH------------HHcC-------C--CCC--------CCcHHHH
Q 004829 473 AVASVFVRLADL-----YHKIGKLRDSKSYCENALK------------IYGK-------P--NHG--------IPSEEIA 518 (728)
Q Consensus 473 ~~~~~~~~la~~-----~~~~g~~~~A~~~~~~al~------------~~~~-------~--~~~--------~~~~~~~ 518 (728)
....++..||.+ ++.+.+..+|..++.--+- -+.. . ..+ .......
T Consensus 540 ~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~ 619 (696)
T KOG2471|consen 540 DLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARG 619 (696)
T ss_pred hhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhH
Confidence 444555555554 4567777787776654110 0000 0 000 0112234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829 519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSA 585 (728)
Q Consensus 519 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 585 (728)
..+++||.++.-+|++++|..++..|..+........ +......+-+..|+...|...+++.
T Consensus 620 v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~-----A~~lavyidL~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 620 VLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQ-----ATVLAVYIDLMLGRSQDALARLKQC 681 (696)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHH-----HHHHHHHHHHhcCCCcchHHHHHhc
Confidence 5678999999999999999999999998887442211 1112223446788888888777665
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.57 E-value=3.6e-07 Score=73.21 Aligned_cols=84 Identities=19% Similarity=0.230 Sum_probs=68.6
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004829 571 MTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLA 650 (728)
Q Consensus 571 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La 650 (728)
.+|+++.|+.+++++++.... .+ ....++.+|.+|+..|++++|+.++++ ... .+......+.+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHH
Confidence 368999999999999988422 12 455777899999999999999999999 555 556677888889
Q ss_pred HHHHHcCChHHHHHHHHHH
Q 004829 651 GTYDAMGRIDDAIEILEYV 669 (728)
Q Consensus 651 ~~~~~~g~~~~A~~~~~~a 669 (728)
.++..+|++++|+.+|+++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 168
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.57 E-value=0.0007 Score=67.08 Aligned_cols=301 Identities=16% Similarity=0.070 Sum_probs=205.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhH
Q 004829 229 TREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAK 308 (728)
Q Consensus 229 a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 308 (728)
|....-.| |-..|.....++-+++.. ..+ ..++..-++.-.-.|+|+.|.+-|+-++.- |...
T Consensus 91 GliAagAG-da~lARkmt~~~~~llss-----Dqe--pLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---------PEtR 153 (531)
T COG3898 91 GLIAAGAG-DASLARKMTARASKLLSS-----DQE--PLIHLLEAQAALLEGDYEDARKKFEAMLDD---------PETR 153 (531)
T ss_pred hhhhhccC-chHHHHHHHHHHHhhhhc-----cch--HHHHHHHHHHHHhcCchHHHHHHHHHHhcC---------hHHH
Confidence 33344444 778888888777765432 112 233444577778889999999999988753 2222
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCC
Q 004829 309 FAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA 388 (728)
Q Consensus 309 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 388 (728)
...+..|-.--...|..+.|+.+-+.+... -|....++...-...+..|+++.|+++.+......--..+..
T Consensus 154 llGLRgLyleAqr~GareaAr~yAe~Aa~~--------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~a 225 (531)
T COG3898 154 LLGLRGLYLEAQRLGAREAARHYAERAAEK--------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVA 225 (531)
T ss_pred HHhHHHHHHHHHhcccHHHHHHHHHHHHhh--------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhH
Confidence 222333334445679999999999999888 577777777777788899999999999988765432222111
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004829 389 SIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKG 468 (728)
Q Consensus 389 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 468 (728)
.-..+..+..-+... ...+...|...-.++.++ .|+.+-.-..-+..++..|+..++-.+++.+.+.
T Consensus 226 eR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~------ 292 (531)
T COG3898 226 ERSRAVLLTAKAMSL-LDADPASARDDALEANKL------APDLVPAAVVAARALFRDGNLRKGSKILETAWKA------ 292 (531)
T ss_pred HHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhc------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc------
Confidence 112222222222222 234566777766666544 5666667777889999999999999999988876
Q ss_pred CCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 469 ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY 548 (728)
Q Consensus 469 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 548 (728)
.-||.... +|....--+.++.-++++-.+..- .++.......++...+..|++..|...-+.+..+.
T Consensus 293 ePHP~ia~-------lY~~ar~gdta~dRlkRa~~L~sl------k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 293 EPHPDIAL-------LYVRARSGDTALDRLKRAKKLESL------KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred CCChHHHH-------HHHHhcCCCcHHHHHHHHHHHHhc------CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 44776544 444444445666667776665322 45567788889999999999999998888877765
Q ss_pred hcCCCCCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 004829 549 GKTPGQQSTIAGIEAQMGVMYYMT-GNYSDSYNTLKSAISK 588 (728)
Q Consensus 549 ~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 588 (728)
+.. .++..|+.+-... |+-.+....+-+++..
T Consensus 360 pre--------s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 360 PRE--------SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chh--------hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 543 4667788887655 9999999999988864
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.56 E-value=4.1e-07 Score=72.90 Aligned_cols=83 Identities=23% Similarity=0.281 Sum_probs=66.9
Q ss_pred cCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 004829 279 LGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVA 358 (728)
Q Consensus 279 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 358 (728)
.|+|++|+.+|+++++..+ ..+ ....++.+|.+|+..|+|++|+.++++ +.. .+....+.+.+|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~-----~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a 65 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDP-----TNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLA 65 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHC-----GTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCC-----CCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHH
Confidence 6899999999999998762 111 223478899999999999999999999 544 455667778889
Q ss_pred HHHHHhCCHHHHHHHHHHH
Q 004829 359 EAHVQSLQFDEAEKICQMA 377 (728)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~a 377 (728)
.++..+|+|++|+.+++++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 170
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.56 E-value=4.1e-07 Score=69.79 Aligned_cols=64 Identities=27% Similarity=0.367 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHH
Q 004829 601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG-RIDDAIEILEYVVGM 672 (728)
Q Consensus 601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g-~~~~A~~~~~~al~~ 672 (728)
+.++..+|.++...|++++|+.+|++++++ +|....+++++|.+|..+| ++++|+..+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 568899999999999999999999999999 9999999999999999999 799999999999985
No 171
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.55 E-value=1.3e-06 Score=85.74 Aligned_cols=108 Identities=14% Similarity=0.099 Sum_probs=92.1
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004829 602 IALNQMGLAC-VQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTA 680 (728)
Q Consensus 602 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 680 (728)
...+..|..+ +..|+|++|+..|+..+..+ |+++....+++.+|.+|+..|++++|+..|++++..+ |+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 3445555554 56799999999999999982 3344446799999999999999999999999999865 68
Q ss_pred ChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829 681 NPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNL 720 (728)
Q Consensus 681 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~ 720 (728)
+|...++++.+|.++..+|++++|+ ..++.+++..|...
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~-~~~~~vi~~yP~s~ 251 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAK-AVYQQVIKKYPGTD 251 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcCCH
Confidence 8899999999999999999999999 99999999988753
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.53 E-value=1.8e-06 Score=73.22 Aligned_cols=103 Identities=23% Similarity=0.187 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004829 602 IALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTAN 681 (728)
Q Consensus 602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 681 (728)
.+++.+|.++-..|+.++|+.+|++++.. +...+....++..+|..|..+|++++|+..+++++.-+ |+.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 46788999999999999999999999885 44566677899999999999999999999999998732 222
Q ss_pred hHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHh
Q 004829 682 PDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLD 714 (728)
Q Consensus 682 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~ 714 (728)
+........++.++...|+.++|+...+..+.+
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 336677778899999999999999555555543
No 173
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.52 E-value=8.4e-07 Score=72.76 Aligned_cols=98 Identities=22% Similarity=0.329 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004829 603 ALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANP 682 (728)
Q Consensus 603 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p 682 (728)
+++.+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.+|++++.+ .|
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--------DP 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence 4678899999999999999999999987 5555578899999999999999999999999884 34
Q ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcc
Q 004829 683 DVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNS 717 (728)
Q Consensus 683 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~ 717 (728)
....++..++.++...|++++|. ..+..+++..|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~~ 99 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEAL-EAYEKALELDP 99 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHH-HHHHHHHccCC
Confidence 45578999999999999999999 88888877665
No 174
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=4.6e-05 Score=71.59 Aligned_cols=249 Identities=12% Similarity=0.041 Sum_probs=156.0
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 004829 360 AHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSI 439 (728)
Q Consensus 360 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 439 (728)
-++..|.|..++...++.... . ........+.+.|..+|++...+.-...+ . .+. ..+...+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~---~------~~~e~d~y~~raylAlg~~~~~~~eI~~~-------~-~~~-lqAvr~~ 78 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS---K------TDVELDVYMYRAYLALGQYQIVISEIKEG-------K-ATP-LQAVRLL 78 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc---c------chhHHHHHHHHHHHHcccccccccccccc-------c-CCh-HHHHHHH
Confidence 355677887776554443211 1 11223556778888888876555433221 1 111 2233444
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHH
Q 004829 440 GDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIAS 519 (728)
Q Consensus 440 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 519 (728)
+.....-++.+.-+.-..+-+.. ............-|.+|..-|++++|+........+ .
T Consensus 79 a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l--------------E 138 (299)
T KOG3081|consen 79 AEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL--------------E 138 (299)
T ss_pred HHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH--------------H
Confidence 44444444444433333332221 112223344555678899999999999988874333 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCCC
Q 004829 520 GLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMT----GNYSDSYNTLKSAISKFRTSGEK 595 (728)
Q Consensus 520 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~ 595 (728)
+...-..++.++.+++-|...++++.++..+. ++..||..|... +.+..|.-+|++.- ++
T Consensus 139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~---------tLtQLA~awv~la~ggek~qdAfyifeE~s-------~k 202 (299)
T KOG3081|consen 139 AAALNVQILLKMHRFDLAEKELKKMQQIDEDA---------TLTQLAQAWVKLATGGEKIQDAFYIFEELS-------EK 202 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHH---------HHHHHHHHHHHHhccchhhhhHHHHHHHHh-------cc
Confidence 33334567788888999999988888775443 455666666543 34555555555443 32
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 596 KSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG 671 (728)
Q Consensus 596 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 671 (728)
.++ ....++.++.+++.+|+|++|...++.++.. ++...+++.++..+-...|...++..-+-.-+.
T Consensus 203 ~~~-T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 203 TPP-TPLLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred cCC-ChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 233 3578899999999999999999999999987 666777999999999999998887765544443
No 175
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.50 E-value=5.8e-07 Score=68.94 Aligned_cols=65 Identities=22% Similarity=0.300 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Q 004829 310 AGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSL-QFDEAEKICQMALDIHR 382 (728)
Q Consensus 310 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~ 382 (728)
..+..+|.++...|++++|+.+|.+++++ +|....++..+|.+|..+| ++++|+..+++++++.|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45999999999999999999999999999 8999999999999999999 79999999999998753
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.49 E-value=5.3e-06 Score=70.32 Aligned_cols=98 Identities=20% Similarity=0.098 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004829 561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHH 640 (728)
Q Consensus 561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 640 (728)
+.+.+|.++-..|+.++|+.+|++++.. +........++..+|..+..+|++++|+..+++++.- +|
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--------~p 69 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--------FP 69 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CC
Confidence 5678999999999999999999999874 2224445679999999999999999999999999875 44
Q ss_pred h---HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 641 D---TLGVYSNLAGTYDAMGRIDDAIEILEYVVG 671 (728)
Q Consensus 641 ~---~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 671 (728)
+ ...+...++.++...|++++|+..+-.++.
T Consensus 70 ~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 70 DDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4 566777889999999999999999988776
No 177
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.48 E-value=0.00015 Score=82.44 Aligned_cols=222 Identities=15% Similarity=0.092 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHc
Q 004829 327 NSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSK 406 (728)
Q Consensus 327 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~ 406 (728)
+..+.|++.+.- +|+....|...-..+.+.++.++|.+.+++||....-..... ...+|..+-++...-
T Consensus 1442 esaeDferlvrs--------sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeE---KLNiWiA~lNlEn~y 1510 (1710)
T KOG1070|consen 1442 ESAEDFERLVRS--------SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEE---KLNIWIAYLNLENAY 1510 (1710)
T ss_pred cCHHHHHHHHhc--------CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHH---HHHHHHHHHhHHHhh
Confidence 334455555544 788888888888889999999999999999997542111111 222333333444445
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 004829 407 GDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYH 486 (728)
Q Consensus 407 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 486 (728)
|.-+.-.+.|++|.+.+ +...+|..|..+|...+.+++|.++|+..++-+. ....+|..+|..++
T Consensus 1511 G~eesl~kVFeRAcqyc-------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl 1575 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYC-------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLL 1575 (1710)
T ss_pred CcHHHHHHHHHHHHHhc-------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHh
Confidence 66677778888887653 2346788899999999999999999999988743 35678899999999
Q ss_pred HcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 004829 487 KIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMG 566 (728)
Q Consensus 487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 566 (728)
.+.+-+.|...+.+|+....+ ..........|.+-++.|+.+.+..+|+-.+..+|+. ..+|.-+.
T Consensus 1576 ~~ne~~aa~~lL~rAL~~lPk-------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR-------tDlW~VYi 1641 (1710)
T KOG1070|consen 1576 RQNEAEAARELLKRALKSLPK-------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR-------TDLWSVYI 1641 (1710)
T ss_pred cccHHHHHHHHHHHHHhhcch-------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc-------hhHHHHHH
Confidence 999999999999999998654 2356677788999999999999999999988877665 34566667
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH
Q 004829 567 VMYYMTGNYSDSYNTLKSAISK 588 (728)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~al~~ 588 (728)
..-.+.|+.+-+..+|++++.+
T Consensus 1642 d~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHccCCHHHHHHHHHHHHhc
Confidence 7778889999999999999876
No 178
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.45 E-value=1.1e-06 Score=72.15 Aligned_cols=97 Identities=29% Similarity=0.448 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCc
Q 004829 435 IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPS 514 (728)
Q Consensus 435 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 514 (728)
+++.+|.++...|++++|+..+++++.. .|....++..+|.++...+++++|+.++++++.....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------- 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD------- 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-------
Confidence 4678999999999999999999999887 5555578899999999999999999999999987422
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 515 EEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY 548 (728)
Q Consensus 515 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 548 (728)
...++..+|.++...|++++|..++.+++...
T Consensus 67 --~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 67 --NAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred --chhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 23678899999999999999999999887654
No 179
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=0.00014 Score=68.81 Aligned_cols=302 Identities=13% Similarity=0.093 Sum_probs=185.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHH
Q 004829 355 RYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVAS 434 (728)
Q Consensus 355 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 434 (728)
..+|.-....+++++|+..|.+.+.-.-...+......-.+...++.+|...|++..--+........+..... +....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk-~k~~K 85 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK-PKITK 85 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc-hhHHH
Confidence 34566677888999999999988854211111111223345778999999999987766665554444433222 33333
Q ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCC
Q 004829 435 IDCSIGDAY-LSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIP 513 (728)
Q Consensus 435 ~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 513 (728)
+...+-..+ .....++.-+..+...++.+.+.. ........-..+..+++..|+|.+|+......+.-+++.. +
T Consensus 86 iirtLiekf~~~~dsl~dqi~v~~~~iewA~rEk--r~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D---D 160 (421)
T COG5159 86 IIRTLIEKFPYSSDSLEDQIKVLTALIEWADREK--RKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD---D 160 (421)
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc---C
Confidence 333333222 334567777888888877755431 0111223345678899999999999999999888877743 4
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004829 514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG 593 (728)
Q Consensus 514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 593 (728)
.+.....+..-..+|....+..++...+..|........-.+...+.+-..-|..++...+|..|..||-++++-+....
T Consensus 161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~ 240 (421)
T COG5159 161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLK 240 (421)
T ss_pred ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccccc
Confidence 56677778888899999999999988888887776665544444555555557778888999999999999998765443
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH--HHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHHHH
Q 004829 594 EKKSALFGIALNQMGLACVQRYTINEAADLF--EEARTILEKEYGPYHHDTLGVYSNLAGTYDA--MGRIDDAIEILEYV 669 (728)
Q Consensus 594 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~--~~al~~~~~~~~~~~~~~~~~~~~La~~~~~--~g~~~~A~~~~~~a 669 (728)
.........-|..|..+.. +..++-...+ ..+++.+ .....+++...+..+.. +.+|..|+.-|..-
T Consensus 241 ~d~kAc~sLkYmlLSkIMl--N~~~evk~vl~~K~t~~~y-------~~r~I~am~avaea~~NRsL~df~~aL~qY~~e 311 (421)
T COG5159 241 MDVKACVSLKYMLLSKIML--NRREEVKAVLRNKNTLKHY-------DDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDE 311 (421)
T ss_pred chHHHHHHHHHHHHHHHHH--hhHHHHHHHHccchhHhhh-------hhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHH
Confidence 3222211222333333333 3333322222 2222211 23345566666666643 34667777666654
Q ss_pred HH
Q 004829 670 VG 671 (728)
Q Consensus 670 l~ 671 (728)
+.
T Consensus 312 l~ 313 (421)
T COG5159 312 LH 313 (421)
T ss_pred hc
Confidence 43
No 180
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.45 E-value=5.9e-06 Score=81.12 Aligned_cols=104 Identities=12% Similarity=0.089 Sum_probs=87.1
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829 560 GIEAQMGVMY-YMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY 638 (728)
Q Consensus 560 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 638 (728)
...+..+..+ +..|+|++|+..|+..+..+.. ......+++++|.+|+..|++++|+..|++++..+ ++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-----s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-----STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 3445556554 6679999999999999987432 33346789999999999999999999999999873 45
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 639 HHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 639 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
++....+++.+|.++..+|++++|...|+++++.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 77789999999999999999999999999999854
No 181
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.45 E-value=1.9e-06 Score=82.03 Aligned_cols=105 Identities=21% Similarity=0.174 Sum_probs=95.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH
Q 004829 604 LNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPD 683 (728)
Q Consensus 604 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~ 683 (728)
+++.|.-++..|+|..|...|..-++. .|+.+....++++||.+++.+|++++|...|..+++-+ |.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 677788888999999999999999887 35567778899999999999999999999999999854 78899
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccc
Q 004829 684 VEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN 719 (728)
Q Consensus 684 ~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~ 719 (728)
..++++.||.+...+|+.++|. ..|+.+++..|..
T Consensus 214 ApdallKlg~~~~~l~~~d~A~-atl~qv~k~YP~t 248 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEAC-ATLQQVIKRYPGT 248 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHCCCC
Confidence 9999999999999999999999 9999999998875
No 182
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=1.4e-05 Score=72.40 Aligned_cols=203 Identities=15% Similarity=0.043 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829 391 EEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGEN 470 (728)
Q Consensus 391 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 470 (728)
..+..++..|..|-..|-..-|.--|.+++.+ .|..+.+++.+|..+...|+|+.|.+.|...+++
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-------- 128 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-------- 128 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--------
Confidence 34556777777888888888888888888766 6888999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHh
Q 004829 471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLN-KALKIYG 549 (728)
Q Consensus 471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~~ 549 (728)
+|..-.+..+.|..++.-|+|.-|.+.+.+..+.. +.+|... .|..+ -...-++.+|...+. ++.....
T Consensus 129 Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D------~~DPfR~-LWLYl---~E~k~dP~~A~tnL~qR~~~~d~ 198 (297)
T COG4785 129 DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD------PNDPFRS-LWLYL---NEQKLDPKQAKTNLKQRAEKSDK 198 (297)
T ss_pred CCcchHHHhccceeeeecCchHhhHHHHHHHHhcC------CCChHHH-HHHHH---HHhhCCHHHHHHHHHHHHHhccH
Confidence 88888999999999999999999998887766552 2233222 12111 122345666665443 3333222
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 550 KTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEART 629 (728)
Q Consensus 550 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 629 (728)
+. .....+-+.+ |+..+ ...++++..-.+ ....-......+++.+|..+...|+.++|..+|+-++.
T Consensus 199 e~----WG~~iV~~yL-------gkiS~-e~l~~~~~a~a~-~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 199 EQ----WGWNIVEFYL-------GKISE-ETLMERLKADAT-DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred hh----hhHHHHHHHH-------hhccH-HHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 21 1111112222 22221 122222222211 01111223467899999999999999999999998877
Q ss_pred H
Q 004829 630 I 630 (728)
Q Consensus 630 ~ 630 (728)
.
T Consensus 266 n 266 (297)
T COG4785 266 N 266 (297)
T ss_pred H
Confidence 5
No 183
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=0.00014 Score=70.43 Aligned_cols=300 Identities=15% Similarity=0.128 Sum_probs=191.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHH
Q 004829 356 YVAEAHVQSLQFDEAEKICQMALDIHREN--TSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVA 433 (728)
Q Consensus 356 ~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 433 (728)
..+.......++++++..+...+...... .+...-..-.....+|..+...|+..+-..........+...+. +..+
T Consensus 9 e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~K-akaa 87 (411)
T KOG1463|consen 9 ERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSK-AKAA 87 (411)
T ss_pred HHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhh-HHHH
Confidence 34444555667788888888777642111 11111112235678999999999998877776655443332221 2233
Q ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCC
Q 004829 434 SIDCSIGDAYL-SLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGI 512 (728)
Q Consensus 434 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 512 (728)
.....+-..+. .-+..+.-+..+..+++...+.. ........-..|..+|...++|.+|+......+.-.++..
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlD--- 162 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--RTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLD--- 162 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc---
Confidence 33344433333 33455677778888887765531 0111223445788999999999999999999988887753
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829 513 PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS 592 (728)
Q Consensus 513 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 592 (728)
+......++..-..+|+...+..+|...+..|.......+-.+...+.+-..-|.++....+|..|..||-+|.+-+...
T Consensus 163 DK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~ 242 (411)
T KOG1463|consen 163 DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL 242 (411)
T ss_pred cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccccc
Confidence 45556777777888999999999999999888777666554444555555556778888899999999999999988776
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHHhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHHH
Q 004829 593 GEKKSALFGIALNQMGLACVQRYTINEAADLFE--EARTILEKEYGPYHHDTLGVYSNLAGTYDA--MGRIDDAIEILEY 668 (728)
Q Consensus 593 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~~~~~~~~~~La~~~~~--~g~~~~A~~~~~~ 668 (728)
+..... ...+-.|-.+-...+..++--.++. .+++. ......++...|.++.. +.+|+.|+.-|..
T Consensus 243 ~~~v~A--~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y--------~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~ 312 (411)
T KOG1463|consen 243 DDDVKA--LTSLKYMLLCKIMLNLPDDVAALLSAKLALKY--------AGRDIDAMKAVAEAFGNRSLKDFEKALADYKK 312 (411)
T ss_pred CCcHHH--HHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhc--------cCcchHHHHHHHHHhcCCcHHHHHHHHHHhHH
Confidence 654222 3344444455555666665444443 33332 33345577777777754 3467777777766
Q ss_pred HHH
Q 004829 669 VVG 671 (728)
Q Consensus 669 al~ 671 (728)
-+.
T Consensus 313 eL~ 315 (411)
T KOG1463|consen 313 ELA 315 (411)
T ss_pred HHh
Confidence 554
No 184
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.43 E-value=0.0014 Score=65.06 Aligned_cols=301 Identities=15% Similarity=0.031 Sum_probs=203.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHH
Q 004829 314 QLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEA 393 (728)
Q Consensus 314 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a 393 (728)
..|.+-.-.|+-..|...-.++-.+.. .+.+. .++..-++.-...|+++.|.+-|+.++.--+.. .
T Consensus 89 StGliAagAGda~lARkmt~~~~~lls----sDqep--LIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtR--------l 154 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLS----SDQEP--LIHLLEAQAALLEGDYEDARKKFEAMLDDPETR--------L 154 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhh----ccchH--HHHHHHHHHHHhcCchHHHHHHHHHHhcChHHH--------H
Confidence 345555667888888888887765532 22332 344555677778999999999999887422110 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 004829 394 ADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPA 473 (728)
Q Consensus 394 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 473 (728)
.-+..|-.-....|+.+.|..|-+.+... -|....+....-...+..|+++.|+++.+.......- +.+...
T Consensus 155 lGLRgLyleAqr~GareaAr~yAe~Aa~~------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi--e~~~ae 226 (531)
T COG3898 155 LGLRGLYLEAQRLGAREAARHYAERAAEK------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI--EKDVAE 226 (531)
T ss_pred HhHHHHHHHHHhcccHHHHHHHHHHHHhh------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh--chhhHH
Confidence 11333333445789999999998888654 3555556666666778899999999999877654221 122222
Q ss_pred HHH--HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829 474 VAS--VFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 474 ~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 551 (728)
... .+...+.... .-+...|.....+++++. ++.+-.-..-+..++..|+..++-..++.+.+..+..
T Consensus 227 R~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~---------pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 227 RSRAVLLTAKAMSLL-DADPASARDDALEANKLA---------PDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred HHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcC---------CccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 222 2222222222 245778888888888883 4455566677889999999999999999887754322
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 552 PGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTIL 631 (728)
Q Consensus 552 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 631 (728)
.++.+|....--+.++.-++++-.+. .+ .++.......++..-+..|++..|..--+.+..+
T Consensus 297 ------------~ia~lY~~ar~gdta~dRlkRa~~L~-sl----k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~- 358 (531)
T COG3898 297 ------------DIALLYVRARSGDTALDRLKRAKKLE-SL----KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE- 358 (531)
T ss_pred ------------HHHHHHHHhcCCCcHHHHHHHHHHHH-hc----CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh-
Confidence 34556655555566677777765542 22 2334677888899999999999999988888877
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHH
Q 004829 632 EKEYGPYHHDTLGVYSNLAGTYDAM-GRIDDAIEILEYVVGM 672 (728)
Q Consensus 632 ~~~~~~~~~~~~~~~~~La~~~~~~-g~~~~A~~~~~~al~~ 672 (728)
.|. ..++..|+.+-... |+-.++..++-+++.-
T Consensus 359 -------~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 -------APR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred -------Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 544 34778889888776 9999999999999873
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.42 E-value=7.8e-07 Score=67.27 Aligned_cols=60 Identities=23% Similarity=0.248 Sum_probs=55.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 606 QMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 606 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
.+|..++..|++++|+..|+++++. +|....+++.+|.++..+|++++|+.+|++++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5789999999999999999999998 89999999999999999999999999999999854
No 186
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.36 E-value=0.0013 Score=64.08 Aligned_cols=229 Identities=23% Similarity=0.258 Sum_probs=166.3
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 004829 364 SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAY 443 (728)
Q Consensus 364 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 443 (728)
.+.+..+...+...+...... .........+..+...+++..+...+...... ...+.....+..++..+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 105 (291)
T COG0457 36 LGELAEALELLEEALELLPNS------DLAGLLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLL 105 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHH
Confidence 345555555555555443321 11234677888888999999999988877643 22456677888889999
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHH
Q 004829 444 LSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLAD-LYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLI 522 (728)
Q Consensus 444 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 522 (728)
...+++..++..+.+++.. .+.........+. ++...|+++.|...+.+++..... .......+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~ 171 (291)
T COG0457 106 EALGKYEEALELLEKALAL--------DPDPDLAEALLALGALYELGDYEEALELYEKALELDPE------LNELAEALL 171 (291)
T ss_pred HHHhhHHHHHHHHHHHHcC--------CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ccchHHHHH
Confidence 9999999999999888875 2222223333344 899999999999999999663210 023455666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q 004829 523 DIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGI 602 (728)
Q Consensus 523 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 602 (728)
..+..+...++++.|+..+.+++...+.. ....+..++..+...+++..|...+..++..... ...
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~ 237 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKLNPDD------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--------NAE 237 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhhCccc------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--------cHH
Confidence 66777888999999999999999887653 2456778899999999999999999999887322 345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 603 ALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 603 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
.+..++..+...+.++++...+.+++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 238 ALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6667777777777899999999999887
No 187
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=0.00011 Score=66.77 Aligned_cols=230 Identities=15% Similarity=0.124 Sum_probs=145.0
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829 429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP 508 (728)
Q Consensus 429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 508 (728)
+...+..++..|..|-..|-+.-|.-.|.+++.+ .|..+.+++.||..+...|+|+.|.+.|...+++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---- 128 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---- 128 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence 4456778888999999999999999999999999 9999999999999999999999999999999998
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 004829 509 NHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYY--MTGNYSDSYNTLKSAI 586 (728)
Q Consensus 509 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al 586 (728)
+|..-.+..+.|..+..-|++.-|.+-+.+-.+ ..+.++... -++|. ..-+..+|...+.+-.
T Consensus 129 -----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ---~D~~DPfR~-------LWLYl~E~k~dP~~A~tnL~qR~ 193 (297)
T COG4785 129 -----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ---DDPNDPFRS-------LWLYLNEQKLDPKQAKTNLKQRA 193 (297)
T ss_pred -----CCcchHHHhccceeeeecCchHhhHHHHHHHHh---cCCCChHHH-------HHHHHHHhhCCHHHHHHHHHHHH
Confidence 444566788889999999999999887765544 333333211 11222 2335666655443322
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHH
Q 004829 587 SKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEIL 666 (728)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~ 666 (728)
+. .... ......+-+.+|.+-. ...++++....+.. ..-.....++++.||..|...|+.++|..+|
T Consensus 194 ~~---~d~e-~WG~~iV~~yLgkiS~--------e~l~~~~~a~a~~n-~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~Lf 260 (297)
T COG4785 194 EK---SDKE-QWGWNIVEFYLGKISE--------ETLMERLKADATDN-TSLAEHLTETYFYLGKYYLSLGDLDEATALF 260 (297)
T ss_pred Hh---ccHh-hhhHHHHHHHHhhccH--------HHHHHHHHhhccch-HHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 11 1100 1111112222232211 12233333221110 0001234568999999999999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChh
Q 004829 667 EYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVR 702 (728)
Q Consensus 667 ~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~ 702 (728)
+-++.-.-- +.-+..-+.+.|+.+...+.+..
T Consensus 261 KLaiannVy----nfVE~RyA~~EL~~l~q~~~~l~ 292 (297)
T COG4785 261 KLAVANNVY----NFVEHRYALLELSLLGQDQDDLA 292 (297)
T ss_pred HHHHHHhHH----HHHHHHHHHHHHHHhccccchhh
Confidence 988863210 11233344555555555544333
No 188
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.33 E-value=0.00014 Score=68.30 Aligned_cols=241 Identities=13% Similarity=0.120 Sum_probs=170.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 004829 323 GQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLI 402 (728)
Q Consensus 323 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~ 402 (728)
...++|+.-|++++++- |+....-..++..+..+++.+++|++-...|.+.+.........+.... ..+.+-..
T Consensus 41 ~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlDy 114 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILDY 114 (440)
T ss_pred cCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHHH
Confidence 47899999999999983 3334555678888999999999999999999999987765443332221 12222222
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH----HHHHHH
Q 004829 403 CDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP----AVASVF 478 (728)
Q Consensus 403 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~ 478 (728)
-....+.+--.++|+..+.......+.......-..+|.+|+..+.|.+-...+++.-.-++...|.++. ....+|
T Consensus 115 iStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiY 194 (440)
T KOG1464|consen 115 ISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIY 194 (440)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhH
Confidence 2233445555566777776666666666666667789999999999999888888877777666555432 344555
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCc
Q 004829 479 VRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIA-SGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQST 557 (728)
Q Consensus 479 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 557 (728)
..-..+|..+.+-.+-..+|++++.+-..+ .+|... .+.-.=|..+.+.|+|++|..-|-+|.+-+.+.-.....
T Consensus 195 AlEIQmYT~qKnNKkLK~lYeqalhiKSAI----PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRt 270 (440)
T KOG1464|consen 195 ALEIQMYTEQKNNKKLKALYEQALHIKSAI----PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRT 270 (440)
T ss_pred hhHhhhhhhhcccHHHHHHHHHHHHhhccC----CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchh
Confidence 556678888888888889999999886553 255433 333344677889999999999999998888777333445
Q ss_pred HHHHHHHHHHHHHHcC
Q 004829 558 IAGIEAQMGVMYYMTG 573 (728)
Q Consensus 558 ~~~~~~~la~~~~~~g 573 (728)
.+.-|..||..+.+.|
T Consensus 271 tCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 271 TCLKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 5556777788877765
No 189
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.28 E-value=0.00067 Score=66.13 Aligned_cols=207 Identities=25% Similarity=0.345 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004829 475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ 554 (728)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 554 (728)
.......+..+...+.+..+...+...+... ..+.....+..++..+...+++..++..+..++......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 128 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELE-------LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP--- 128 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhh-------hccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc---
Confidence 3444555555556666666666555555420 022344455555555555566666666555555433222
Q ss_pred CCcHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 555 QSTIAGIEAQMGV-MYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK 633 (728)
Q Consensus 555 ~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 633 (728)
.......+. ++...|+++.|...+.+++.. ... .......+...+..+...++++.|+..+.+++..
T Consensus 129 ----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--- 196 (291)
T COG0457 129 ----DLAEALLALGALYELGDYEEALELYEKALEL----DPE-LNELAEALLALGALLEALGRYEEALELLEKALKL--- 196 (291)
T ss_pred ----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC-ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---
Confidence 011112222 555666666666666666331 000 0112333444444455556666666666666655
Q ss_pred hcCCCChh-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 004829 634 EYGPYHHD-TLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTF 712 (728)
Q Consensus 634 ~~~~~~~~-~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~l 712 (728)
.+. ....+..++..+...+++..|...+..++... |........++..+...|.++++. ..+...
T Consensus 197 -----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 262 (291)
T COG0457 197 -----NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--------PDNAEALYNLALLLLELGRYEEAL-EALEKA 262 (291)
T ss_pred -----CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------cccHHHHhhHHHHHHHcCCHHHHH-HHHHHH
Confidence 333 34455566666666666666666666666532 223334444555555455555555 555555
Q ss_pred Hhhcc
Q 004829 713 LDSNS 717 (728)
Q Consensus 713 l~~~~ 717 (728)
+...+
T Consensus 263 ~~~~~ 267 (291)
T COG0457 263 LELDP 267 (291)
T ss_pred HHhCc
Confidence 44443
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.26 E-value=3.8e-06 Score=63.42 Aligned_cols=64 Identities=23% Similarity=0.283 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccc
Q 004829 647 SNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN 719 (728)
Q Consensus 647 ~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~ 719 (728)
+.+|..+...|++++|+..|++++. .+|....+++.+|.++..+|++++|+ ..++.+++..|.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~-~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEAL-AYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcCC
Confidence 4689999999999999999999998 67999999999999999999999999 9999999998874
No 191
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.25 E-value=0.0024 Score=68.90 Aligned_cols=187 Identities=18% Similarity=0.094 Sum_probs=132.2
Q ss_pred HHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHH---HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHhcCCCCCCcH
Q 004829 486 HKIGKLRDSKSYCENALKIYGKPNHGIPSEEIA---SGLIDIAAIYQ----SMNELEQAVKLLNKALKIYGKTPGQQSTI 558 (728)
Q Consensus 486 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 558 (728)
--.|+-+.++..+.++.+ ...+ ..+... ..|+.....+. .....+.|.+.+....+.+|+.
T Consensus 199 GF~gdR~~GL~~L~~~~~-~~~i----~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s------- 266 (468)
T PF10300_consen 199 GFSGDRELGLRLLWEASK-SENI----RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS------- 266 (468)
T ss_pred CcCCcHHHHHHHHHHHhc-cCCc----chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc-------
Confidence 346899999999998866 2222 122111 11112111122 2345677888888888877765
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829 559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY 638 (728)
Q Consensus 559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 638 (728)
+..+...|.++...|+.++|+..|++++..-... ......+++.+|.++..+.+|++|..+|.+..+..
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s------- 335 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES------- 335 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-------
Confidence 5567788999999999999999999988532222 23345789999999999999999999999988751
Q ss_pred ChhHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 004829 639 HHDTLGVYSNLAGTYDAMGRI-------DDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELL 695 (728)
Q Consensus 639 ~~~~~~~~~~La~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~ 695 (728)
.-..+...+..|.++...|+. ++|..+|.++-.+..+..|...|...-+........
T Consensus 336 ~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~ 399 (468)
T PF10300_consen 336 KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYE 399 (468)
T ss_pred ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHH
Confidence 223444567788999999999 999999999999888877767776555554444333
No 192
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=2.2e-05 Score=70.16 Aligned_cols=117 Identities=13% Similarity=0.054 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004829 518 ASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS 597 (728)
Q Consensus 518 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 597 (728)
+..+..-|.-++..|+|++|..-|..|+.+++..+. .....+|.+.|.++.+++.++.|+..+.+++++ .
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~--e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~ 164 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST--EERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------N 164 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH--HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------C
Confidence 344556688899999999999999999999987644 344557789999999999999999999999998 5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004829 598 ALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGT 652 (728)
Q Consensus 598 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~ 652 (728)
+.+..++...|.+|.+...|++|++.|.+.+++ +|....+...++++
T Consensus 165 pty~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 165 PTYEKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARL 211 (271)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhc
Confidence 667788999999999999999999999999998 77665555444443
No 193
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=2.8e-05 Score=69.48 Aligned_cols=134 Identities=13% Similarity=0.209 Sum_probs=106.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004829 563 AQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDT 642 (728)
Q Consensus 563 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 642 (728)
-.-|.-++..|+|++|..-|..|+.++..... .....+|.+.|.++++++.++.|+..+.+++++ .|..
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~---e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~pty 167 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTST---EERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------NPTY 167 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccH---HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------Cchh
Confidence 44578889999999999999999998765443 345678899999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHH-HHHHHHHhh
Q 004829 643 LGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKS-RSLVTFLDS 715 (728)
Q Consensus 643 ~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~-~~l~~ll~~ 715 (728)
..++...|.+|.++..+++|+.-|++.+++ +|....+...++++--......++.. ..+..|-+.
T Consensus 168 ~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdl 233 (271)
T KOG4234|consen 168 EKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARLPPKINERNEKMKEEMMEKLKDL 233 (271)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999984 46666666666666555444444332 344555443
No 194
>PRK11906 transcriptional regulator; Provisional
Probab=98.23 E-value=4.8e-05 Score=78.18 Aligned_cols=159 Identities=18% Similarity=0.133 Sum_probs=122.3
Q ss_pred HHHHHHHHHHhC---CHHHHHHHHHHHH---HHHHHHcCCCChHHHHHHHHHHHHHHHh---------CCHHHHHHHHHH
Q 004829 312 CMQLGDTYAMLG---QIENSILCYTAGL---EIQRQVLGETDHRVGETCRYVAEAHVQS---------LQFDEAEKICQM 376 (728)
Q Consensus 312 ~~~la~~~~~~g---~~~~A~~~~~~al---~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~ 376 (728)
++..|......+ ..+.|+.+|.+++ .+ +|..+.+|..+|.+++.. ....+|..+.++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~l--------dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r 329 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDI--------QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDY 329 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccC--------CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 566666665554 4567888899998 55 899999999999998765 134566777777
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004829 377 ALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSY 456 (728)
Q Consensus 377 al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 456 (728)
++++.+.. +.++..+|.+....++++.|...|++|+.+ .|..+.+++..|.+....|+.++|++.+
T Consensus 330 Aveld~~D--------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 330 VSDITTVD--------GKILAIMGLITGLSGQAKVSHILFEQAKIH------STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHhcCCCC--------HHHHHHHHHHHHhhcchhhHHHHHHHHhhc------CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77665443 457889999999999999999999999876 7889999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHcCChHHHHHHHHH
Q 004829 457 HKALTAFKSAKGENHPAVASVFVRLADL-YHKIGKLRDSKSYCEN 500 (728)
Q Consensus 457 ~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~ 500 (728)
++++.+ .|....+-...-.+ .+.....++|+.+|-+
T Consensus 396 ~~alrL--------sP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQL--------EPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHhcc--------CchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 999998 66654443332222 3344567777777654
No 195
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.23 E-value=0.00011 Score=60.83 Aligned_cols=122 Identities=17% Similarity=0.112 Sum_probs=94.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004829 562 EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHD 641 (728)
Q Consensus 562 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 641 (728)
+..-|..+...|+.+.|++.|.+++.+. +..+.+|++.+.++.-+|+.++|++.+++++++. |+....
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~trt 113 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTRT 113 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----CccchH
Confidence 3456778889999999999999999983 4457899999999999999999999999999984 333444
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH----HHcCCCChHHHHHHHHHHHHH
Q 004829 642 TLGVYSNLAGTYDAMGRIDDAIEILEYVVGMRE----EKLGTANPDVEDEKRRLAELL 695 (728)
Q Consensus 642 ~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~p~~~~~~~~La~~~ 695 (728)
...++...|.+|..+|+.+.|..-|+.+.++-. ..+-.-+|-.+-+...|+.+.
T Consensus 114 acqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa~~f 171 (175)
T KOG4555|consen 114 ACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLADAF 171 (175)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 566888999999999999999999999987521 111123454444444455443
No 196
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.23 E-value=4e-05 Score=63.44 Aligned_cols=101 Identities=16% Similarity=0.131 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCc
Q 004829 435 IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPS 514 (728)
Q Consensus 435 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 514 (728)
.+-.-|......|+.+.|++.|.+++.+ -|..+.+|++.+..+..+|+.++|+..+++++++.. ...
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag-----~~t 111 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELAG-----DQT 111 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC-----ccc
Confidence 3455677888999999999999999999 888899999999999999999999999999999963 335
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 515 EEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY 548 (728)
Q Consensus 515 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 548 (728)
.....++...|.+|..+|+.+.|..-|+.+-++-
T Consensus 112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 112 RTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 5677889999999999999999999999988763
No 197
>PRK15331 chaperone protein SicA; Provisional
Probab=98.21 E-value=2e-05 Score=69.44 Aligned_cols=103 Identities=13% Similarity=0.056 Sum_probs=85.5
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829 553 GQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILE 632 (728)
Q Consensus 553 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 632 (728)
+.........+..|.-++..|++++|...|+-..-. ++.....+..||.++..+++|++|+..|..|..+
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-- 100 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-- 100 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 334444556678899999999999999999877654 3334567899999999999999999999999887
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 633 KEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG 671 (728)
Q Consensus 633 ~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 671 (728)
.++.....+..|.||..+|+.+.|+..|+.++.
T Consensus 101 ------~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 101 ------LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ------ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 444445689999999999999999999999987
No 198
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.21 E-value=0.00066 Score=64.35 Aligned_cols=187 Identities=17% Similarity=0.138 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004829 518 ASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS 597 (728)
Q Consensus 518 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 597 (728)
+..++.-|...+..|++++|...|+......+-. +....+...++.++++.+++++|+..+++-+.++.. +
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s----~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~-----~ 104 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFS----PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT-----H 104 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-----C
Confidence 5668888999999999999999999877544322 223567778999999999999999999999887432 4
Q ss_pred HHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhcCCC-Ch-----------hHHHHHHHHHHHHHHcCChH
Q 004829 598 ALFGIALNQMGLACVQR-----YTINEAADLFEEARTILEKEYGPY-HH-----------DTLGVYSNLAGTYDAMGRID 660 (728)
Q Consensus 598 ~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~-~~-----------~~~~~~~~La~~~~~~g~~~ 660 (728)
+....+++..|.+++.. .+...+...+...-++..+-.... .+ ..+.--..+|..|.+.|.+.
T Consensus 105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 44567788888887754 344444444444333333321110 01 11222345788999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccc
Q 004829 661 DAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN 719 (728)
Q Consensus 661 ~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~ 719 (728)
.|+..++.+++-. ++.+...+++..|..+|..+|-.++|. +....+..+.|+.
T Consensus 185 AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~~a~-~~~~vl~~N~p~s 237 (254)
T COG4105 185 AAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTDEAK-KTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChHHHH-HHHHHHHhcCCCC
Confidence 9999999999865 355677889999999999999999998 7766665555543
No 199
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=2.8e-05 Score=75.18 Aligned_cols=108 Identities=15% Similarity=0.048 Sum_probs=94.7
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHH
Q 004829 597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG---RIDDAIEILEYVVGMR 673 (728)
Q Consensus 597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g---~~~~A~~~~~~al~~~ 673 (728)
++..+.-|..||.+|+.+|++..|...|.+|+++ .|+....+..+|.++..+. ...+|..+|++++.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~-- 221 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA-- 221 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--
Confidence 3445678999999999999999999999999999 7777888899998887654 46789999999998
Q ss_pred HHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829 674 EEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK 721 (728)
Q Consensus 674 ~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~ 721 (728)
.+|....+++.||..++.+|++.+|+ ..++.+++..|.+..
T Consensus 222 ------~D~~~iral~lLA~~afe~g~~~~A~-~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 222 ------LDPANIRALSLLAFAAFEQGDYAEAA-AAWQMLLDLLPADDP 262 (287)
T ss_pred ------cCCccHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcCCCCCc
Confidence 45888999999999999999999999 999999998887654
No 200
>PRK11906 transcriptional regulator; Provisional
Probab=98.20 E-value=5.4e-05 Score=77.81 Aligned_cols=165 Identities=15% Similarity=0.104 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---------CChhHHHHHHHHh
Q 004829 224 FLLKQTREMISSG--ENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSL---------GQYNEAIPVLERS 292 (728)
Q Consensus 224 ~l~~~a~~~~~~g--~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a 292 (728)
-++..|...+..+ ...+.|+.+|.+|+.. ..-+|..+.+|..++.|++.. .+..+|.++.++|
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~------~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rA 330 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNK------SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYV 330 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhc------ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 4466777776665 2345677777777732 234577888899999998765 2245677888888
Q ss_pred hhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Q 004829 293 VEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEK 372 (728)
Q Consensus 293 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 372 (728)
+++. +.++. ++..+|.++...++++.|+..|++++.+ .|+.+.+++..|.+....|+.++|.+
T Consensus 331 veld-----~~Da~----a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 331 SDIT-----TVDGK----ILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred HhcC-----CCCHH----HHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 8775 55544 4899999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829 373 ICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVL 418 (728)
Q Consensus 373 ~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 418 (728)
.+++++++.|.... + ....+-.-.+...-.++|+.+|-+
T Consensus 394 ~i~~alrLsP~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 394 CIDKSLQLEPRRRK------A-VVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHhccCchhhH------H-HHHHHHHHHHcCCchhhhHHHHhh
Confidence 99999988764321 1 222222212334456677766643
No 201
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.19 E-value=3.3e-05 Score=79.88 Aligned_cols=120 Identities=17% Similarity=0.108 Sum_probs=101.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004829 565 MGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLG 644 (728)
Q Consensus 565 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 644 (728)
|-.++...++++.|+..+++..+. .+ .+...++.++...++..+|+..+.+++.. .|....
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~--------~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~ 235 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER--------DP---EVAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSE 235 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc--------CC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHH
Confidence 445556678899998888887654 22 34556899999999999999999999976 777788
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 004829 645 VYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTF 712 (728)
Q Consensus 645 ~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~l 712 (728)
.+...|..+...++++.|+...++++.+. |.....|+.|+.+|..+|++++|. ..++.+
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e~AL-laLNs~ 294 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFENAL-LALNSC 294 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHHHHH-HHHhcC
Confidence 88999999999999999999999999964 999999999999999999999999 555543
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=7.5e-05 Score=72.24 Aligned_cols=116 Identities=18% Similarity=0.131 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhc
Q 004829 559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY---TINEAADLFEEARTILEKEY 635 (728)
Q Consensus 559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~ 635 (728)
+.-|..||.+|..+|++..|...|.+|+++ .+.....+..+|.++..+. ...++..+|++++..
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~----- 222 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL----- 222 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-----
Confidence 456788999999999999999999999998 3334577888888877654 578999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 004829 636 GPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAEL 694 (728)
Q Consensus 636 ~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~ 694 (728)
+|....+++.||..++..|+|.+|...++..+.. +.++.|....+-..++..
T Consensus 223 ---D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~----lp~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 223 ---DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL----LPADDPRRSLIERSIARA 274 (287)
T ss_pred ---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----CCCCCchHHHHHHHHHHH
Confidence 8999999999999999999999999999999984 345555555444444443
No 203
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.16 E-value=3.7e-05 Score=79.54 Aligned_cols=120 Identities=14% Similarity=0.198 Sum_probs=101.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHH
Q 004829 524 IAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIA 603 (728)
Q Consensus 524 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 603 (728)
|..++...++++.|+..+++..+..+ .+...++.++...++..+|+..+.+++.. .+..+..
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~p----------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~L 236 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDP----------EVAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSEL 236 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCC----------cHHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHHH
Confidence 34555667889999999998765432 13456899999999999999999999954 2223678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829 604 LNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYV 669 (728)
Q Consensus 604 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a 669 (728)
+...+..+...++++.|+...++++.+ .|.....|+.||.+|..+|+++.|+..++.+
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 888999999999999999999999999 9999999999999999999999999887754
No 204
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.0048 Score=58.66 Aligned_cols=227 Identities=12% Similarity=0.075 Sum_probs=158.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH----HHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCC
Q 004829 313 MQLGDTYAMLGQIENSILCYTAGLEI----QRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA 388 (728)
Q Consensus 313 ~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 388 (728)
..+|.-....+++++|+..|.+.+.- -++. -.+.-.+...++.+|...|++..--+......+...+...+.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~----~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k 82 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKT----LNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPK 82 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh----hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchh
Confidence 45677777889999999999888765 1111 123445778899999999998876666666555554443322
Q ss_pred cHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004829 389 SIEEAADRRLMGL-ICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK 467 (728)
Q Consensus 389 ~~~~a~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 467 (728)
.+.+...+-. +-.....++.-+..+...++.+.+..........-..+..+++..|.|.+|+......+.-+++.
T Consensus 83 ---~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~- 158 (421)
T COG5159 83 ---ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY- 158 (421)
T ss_pred ---HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh-
Confidence 2222333322 22234567777777777776654444333444556678889999999999999999998888877
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 468 GENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEE-IASGLIDIAAIYQSMNELEQAVKLLNKALK 546 (728)
Q Consensus 468 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 546 (728)
++.+....++..-..+|....+..++...+..|........ .+|. .+..-..-|.+++...+|.-|..+|-++++
T Consensus 159 -DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~Y---CPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 159 -DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAY---CPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred -cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccC---CCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 56777778888888999999999999988888777765543 2333 333333446677788899999999999998
Q ss_pred HHhcC
Q 004829 547 IYGKT 551 (728)
Q Consensus 547 ~~~~~ 551 (728)
-+...
T Consensus 235 gft~l 239 (421)
T COG5159 235 GFTLL 239 (421)
T ss_pred ccccc
Confidence 76654
No 205
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.14 E-value=4.8e-05 Score=65.55 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004829 601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTA 680 (728)
Q Consensus 601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 680 (728)
...++.-|...++.|+|.+|++.|+.....+ |..+....+...|+.+|+..+++++|+..+++.+++. |.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----PT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC
Confidence 4678888999999999999999999877662 3345566789999999999999999999999999965 89
Q ss_pred ChHHHHHHHHHHHHHHHhCC---------------hhHHHHHHHHHHHhhccccc
Q 004829 681 NPDVEDEKRRLAELLKEAGR---------------VRNRKSRSLVTFLDSNSQNL 720 (728)
Q Consensus 681 ~p~~~~~~~~La~~~~~~g~---------------~~~A~~~~l~~ll~~~~~~~ 720 (728)
||...-+++..|.++..+.. ..+|. ..++.++...|+..
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~-~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAF-RDFEQLVRRYPNSE 133 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHH-HHHHHHHHHCcCCh
Confidence 99999999999999999887 88888 89999999988754
No 206
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.14 E-value=0.00019 Score=68.01 Aligned_cols=174 Identities=17% Similarity=0.131 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcH
Q 004829 311 GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASI 390 (728)
Q Consensus 311 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 390 (728)
.++.-|......|+|++|+..|+.+.... +..|....+...++.++++.++++.|+...++-+.++|.+.+.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~--- 107 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA--- 107 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh---
Confidence 48889999999999999999999887653 2356677899999999999999999999999999999877654
Q ss_pred HHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhcCCChh--------------HHHHHHHHHHHHHHhCCHHH
Q 004829 391 EEAADRRLMGLICDSK-----GDYEAALEHYVLASMSMAANGHELD--------------VASIDCSIGDAYLSLARFDE 451 (728)
Q Consensus 391 ~~a~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~ 451 (728)
..+++..|.+++.. .|...+...+...-.+....++.+- ++.--..+|..|.+.|.+..
T Consensus 108 --dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 108 --DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred --hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 33577777776643 3344444444443344444443322 12233567889999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004829 452 AIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCE 499 (728)
Q Consensus 452 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 499 (728)
|+..++.+++-+.. .+....++..+..+|..+|-.++|...-.
T Consensus 186 A~nR~~~v~e~y~~-----t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 186 AINRFEEVLENYPD-----TSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 99999999987543 45667888899999999999999876543
No 207
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.14 E-value=4.8e-05 Score=82.48 Aligned_cols=136 Identities=11% Similarity=0.016 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHH
Q 004829 394 ADRRLMGLICDSKGD---YEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFD--------EAIFSYHKALTA 462 (728)
Q Consensus 394 ~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~ 462 (728)
..++..|..+...++ +..|+.+|++|+.+ +|+.+.++..++.+|.....+. .+.....+++.+
T Consensus 340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKS------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 344555555555444 78999999999977 7888888888888776653332 333333333222
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829 463 FKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLN 542 (728)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 542 (728)
...+....++..+|..+...|++++|...+++|+.+. +. +.+|..+|.++...|++++|+..|+
T Consensus 414 ------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---------ps-~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 414 ------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE---------MS-WLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred ------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CC-HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1133345778888999999999999999999999982 32 5789999999999999999999999
Q ss_pred HHHHHHhcC
Q 004829 543 KALKIYGKT 551 (728)
Q Consensus 543 ~al~~~~~~ 551 (728)
+|+.+.+..
T Consensus 478 ~A~~L~P~~ 486 (517)
T PRK10153 478 TAFNLRPGE 486 (517)
T ss_pred HHHhcCCCC
Confidence 999987665
No 208
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.14 E-value=5e-05 Score=82.32 Aligned_cols=131 Identities=11% Similarity=-0.014 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHH
Q 004829 311 GCMQLGDTYAMLGQ---IENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQF--------DEAEKICQMALD 379 (728)
Q Consensus 311 ~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~ 379 (728)
-++..|..|...+. +..|+.+|++++++ +|..+.++..++.+|.....+ ..+.....+++.
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 46667777766654 88999999999999 899999999888887665332 233333333322
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829 380 IHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKA 459 (728)
Q Consensus 380 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 459 (728)
+.. ++.. ..++..+|..+...|++++|...+++|+.+ .+. +.+|..+|.++...|++++|++.|++|
T Consensus 413 l~~---~~~~---~~~~~ala~~~~~~g~~~~A~~~l~rAl~L------~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 413 LPE---LNVL---PRIYEILAVQALVKGKTDEAYQAINKAIDL------EMS-WLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred ccc---CcCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 211 1111 346778888888999999999999999876 343 679999999999999999999999999
Q ss_pred HHH
Q 004829 460 LTA 462 (728)
Q Consensus 460 l~~ 462 (728)
+.+
T Consensus 480 ~~L 482 (517)
T PRK10153 480 FNL 482 (517)
T ss_pred Hhc
Confidence 998
No 209
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.13 E-value=4.7e-05 Score=72.73 Aligned_cols=102 Identities=18% Similarity=0.233 Sum_probs=90.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004829 562 EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHD 641 (728)
Q Consensus 562 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 641 (728)
+++.|.-++..|+|..|...|...++.+ ++....+.++++||.+++.+|+|+.|...|..+.+-+ +.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 6788888999999999999999998864 3345567899999999999999999999999998863 55777
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 642 TLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 642 ~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
..++++.||.+...+|+.++|...|+++++-+
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 88899999999999999999999999999854
No 210
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.13 E-value=0.0026 Score=63.84 Aligned_cols=256 Identities=13% Similarity=0.079 Sum_probs=144.6
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-ChhHHHHHHHHhhhhhhh-----hcCCchh
Q 004829 232 MISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLG-QYNEAIPVLERSVEIPVL-----EDGQDHA 305 (728)
Q Consensus 232 ~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~-----~~~~~~~ 305 (728)
.+..| +++.|..++.++-.... ..........+..+++.|......+ ++++|..+++++.++... ...++..
T Consensus 3 A~~~~-~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~ 80 (278)
T PF08631_consen 3 AWKQG-DLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS 80 (278)
T ss_pred chhhC-CHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence 45666 89999999999987764 2112222557888999999999999 999999999999999633 2223333
Q ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Q 004829 306 LAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENT 385 (728)
Q Consensus 306 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 385 (728)
...+.++..++.+|...+.++.... ...++......+ |+....+..--.+....++.+.+.+.+.+++.-..-..
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~----~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e 155 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEK-ALNALRLLESEY----GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE 155 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhC----CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc
Confidence 4567789999999999988765544 333444443332 23223332222333337888888888888876543111
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHh--CCHHHH--HHHHHHHH
Q 004829 386 SPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAA-NGHELDVASIDCSIGDAYLSL--ARFDEA--IFSYHKAL 460 (728)
Q Consensus 386 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~--g~~~~A--~~~~~~al 460 (728)
. ... .+...+-. + .......|...+...+...-. ..+. ...... +-.++... ++.... ++.....+
T Consensus 156 ~--~~~--~~l~~i~~-l-~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~v--l~~~~~~~~~~~~~~~~~i~~l~~~~ 226 (278)
T PF08631_consen 156 S--NFD--SILHHIKQ-L-AEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLV--LTRVLLTTQSKDLSSSEKIESLEELL 226 (278)
T ss_pred c--hHH--HHHHHHHH-H-HhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHH--HHHHHHHcCCccccchhHHHHHHHHH
Confidence 1 110 01111111 1 112334555555554432211 1111 111111 11222222 222222 44444444
Q ss_pred HHHHHhcCCC-CHH----HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 461 TAFKSAKGEN-HPA----VASVFVRLADLYHKIGKLRDSKSYCENALK 503 (728)
Q Consensus 461 ~~~~~~~~~~-~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (728)
....+..+.. .+. ....+.+.|...++.++|++|..+|+-++.
T Consensus 227 ~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 227 SIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 4333332221 222 224566778999999999999999998763
No 211
>PRK15331 chaperone protein SicA; Provisional
Probab=98.13 E-value=3.5e-05 Score=67.90 Aligned_cols=98 Identities=12% Similarity=0.073 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 004829 308 KFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP 387 (728)
Q Consensus 308 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 387 (728)
.+...+..|.-++..|++++|..+|+-..-. ++...+.+..||.++..+++|++|+..|..+..+....+.+
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p 107 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP 107 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence 4556889999999999999999999977766 67778889999999999999999999999999887665544
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 388 ASIEEAADRRLMGLICDSKGDYEAALEHYVLASM 421 (728)
Q Consensus 388 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 421 (728)
.+..|.|+..+|+...|+..|..++.
T Consensus 108 --------~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 --------VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred --------cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 67899999999999999999998875
No 212
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.10 E-value=0.0059 Score=61.28 Aligned_cols=254 Identities=20% Similarity=0.128 Sum_probs=148.9
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHh-c---CCC----hh
Q 004829 361 HVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKG-DYEAALEHYVLASMSMAA-N---GHE----LD 431 (728)
Q Consensus 361 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~-~---~~~----~~ 431 (728)
...+|+++.|..++.++-..............+..+++.|......+ +++.|..+++++.+++.. . ... ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35789999999999999887753332233456778999999999999 999999999999998644 1 122 24
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC
Q 004829 432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG 511 (728)
Q Consensus 432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 511 (728)
...++..++.+|...+.++...+ ..+++......++ ++|.. +..--.++...++.+++.+.+.+++.-..-
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~---~~L~l~il~~~~~~~~~~~~L~~mi~~~~~---- 153 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEV---FLLKLEILLKSFDEEEYEEILMRMIRSVDH---- 153 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHH---HHHHHHHHhccCChhHHHHHHHHHHHhccc----
Confidence 56778899999999988764444 4455555555433 23332 322223333378889999988888876431
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcC--CHHHH--HHHHHHHHH
Q 004829 512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTG--NYSDS--YNTLKSAIS 587 (728)
Q Consensus 512 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A--~~~~~~al~ 587 (728)
..............+.. .....|...+...+...-...... ..... .+..++...+ +.... ++.....+.
T Consensus 154 --~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~--vl~~~~~~~~~~~~~~~~~i~~l~~~~~ 227 (278)
T PF08631_consen 154 --SESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQ-WLEKL--VLTRVLLTTQSKDLSSSEKIESLEELLS 227 (278)
T ss_pred --ccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhH-HHHHH--HHHHHHHHcCCccccchhHHHHHHHHHH
Confidence 11122222222222222 234566666666655433321211 12211 1222232222 22222 444444444
Q ss_pred HHHHh-CCCCcHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 588 KFRTS-GEKKSAL----FGIALNQMGLACVQRYTINEAADLFEEART 629 (728)
Q Consensus 588 ~~~~~-~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 629 (728)
..... ...-... ....+.+.|..++..++|.+|+.+|+-++.
T Consensus 228 ~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 228 IVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 33322 2221221 123466778999999999999999998763
No 213
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.09 E-value=0.00041 Score=65.19 Aligned_cols=242 Identities=13% Similarity=0.123 Sum_probs=160.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHH
Q 004829 237 ENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLG 316 (728)
Q Consensus 237 ~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la 316 (728)
.++++|+.-|++++.+- +.....-..++-.+..+++.+|+|++-...|.+.+.........+...-.+ ..+-
T Consensus 41 ~~p~~Al~sF~kVlelE-----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsI---N~Il 112 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELE-----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSI---NSIL 112 (440)
T ss_pred cCHHHHHHHHHHHHhcc-----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHH---HHHH
Confidence 47999999999999873 222233466788889999999999999999999988765444444433322 2222
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcH----HH
Q 004829 317 DTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASI----EE 392 (728)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~ 392 (728)
..-....+.+--..+|+..++..+.. .++.....+...||.+|+..+.|.+-.+.+.+.-.-+....+.++. ..
T Consensus 113 DyiStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQL 190 (440)
T KOG1464|consen 113 DYISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQL 190 (440)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchh
Confidence 22223344444455666666554432 1233334455679999999999998888888777666554443322 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 004829 393 AADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP 472 (728)
Q Consensus 393 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 472 (728)
..+|..-..+|..+.+-..-..+|++++.+-...+.+.-...+.-.=|.++.+.|+|++|...|-+|..-+.+...+ ..
T Consensus 191 LEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp-RR 269 (440)
T KOG1464|consen 191 LEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP-RR 269 (440)
T ss_pred hhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc-ch
Confidence 33444455677778888888888999887766555554555555566788999999999999998888876665221 23
Q ss_pred HHHHHHHHHHHHHHHcC
Q 004829 473 AVASVFVRLADLYHKIG 489 (728)
Q Consensus 473 ~~~~~~~~la~~~~~~g 489 (728)
....-|..||..+.+.|
T Consensus 270 ttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 270 TTCLKYLVLANMLMKSG 286 (440)
T ss_pred hHHHHHHHHHHHHHHcC
Confidence 34445666777777765
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.00059 Score=63.95 Aligned_cols=141 Identities=14% Similarity=0.027 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChh
Q 004829 352 ETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELD 431 (728)
Q Consensus 352 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 431 (728)
.+.+.++.++.-.+.|.-....+.+.++..+... ......||.+..+.||.+.|..+|+..-+.......-..
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~-------p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~ 250 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQE-------PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQG 250 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCccc-------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccch
Confidence 4566778888889999999999999988443221 235778999999999999999999977655555555556
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829 432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK 507 (728)
Q Consensus 432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (728)
...+..+.+.+|.-.+++..|...|.+++.. ++..+.+.++.|.|+...|+..+|++.++.++.+...
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 6778889999999999999999999999887 7788889999999999999999999999999888543
No 215
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.07 E-value=8.9e-06 Score=62.06 Aligned_cols=67 Identities=28% Similarity=0.348 Sum_probs=56.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 004829 611 CVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRR 690 (728)
Q Consensus 611 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~ 690 (728)
++..|++++|+..|++++.. +|+...+++.+|.+|...|++++|...+++++. .+|+....+..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--------~~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK--------QDPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--------GGTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HCcCHHHHHHH
Confidence 35789999999999999999 888899999999999999999999999999998 34666555555
Q ss_pred HHH
Q 004829 691 LAE 693 (728)
Q Consensus 691 La~ 693 (728)
++.
T Consensus 65 ~a~ 67 (68)
T PF14559_consen 65 LAQ 67 (68)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
No 216
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.04 E-value=0.00013 Score=62.94 Aligned_cols=105 Identities=15% Similarity=0.109 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829 559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY 638 (728)
Q Consensus 559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 638 (728)
...++.-|...+..|+|.+|++.|+.....+. ..+....+...|+.+|+..+++++|+..+++.+++ .|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP-----~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYP-----FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 45567889999999999999999988766532 23334578899999999999999999999999998 577
Q ss_pred ChhHHHHHHHHHHHHHHcCC---------------hHHHHHHHHHHHHHH
Q 004829 639 HHDTLGVYSNLAGTYDAMGR---------------IDDAIEILEYVVGMR 673 (728)
Q Consensus 639 ~~~~~~~~~~La~~~~~~g~---------------~~~A~~~~~~al~~~ 673 (728)
||...-+++..|.++..+.. ..+|...|++.+..+
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 88888899999999998876 778888888888754
No 217
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.04 E-value=0.00024 Score=62.94 Aligned_cols=122 Identities=19% Similarity=0.197 Sum_probs=97.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004829 562 EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHD 641 (728)
Q Consensus 562 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 641 (728)
.+.||..+...|++.+|...|++++.-. -......+..++++.+..+++..|...+++..+. +|.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~-------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--------~pa 156 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGI-------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--------NPA 156 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccc-------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--------CCc
Confidence 4578999999999999999999998631 1112467888999999999999999999987775 222
Q ss_pred --HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHH
Q 004829 642 --TLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSR 707 (728)
Q Consensus 642 --~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~ 707 (728)
.......+|.+|..+|++.+|...|+.++..+ |. ..+....+..+..+|+.++|.++
T Consensus 157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--------pg-~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISYY--------PG-PQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHhcchhHHHHH
Confidence 23356778999999999999999999999854 32 34566778999999999999853
No 218
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.01 E-value=0.0011 Score=59.02 Aligned_cols=162 Identities=18% Similarity=0.133 Sum_probs=119.2
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 004829 359 EAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCS 438 (728)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 438 (728)
....+.-+.+....-..+.+++.|.. .-.+.||......|++.+|..+|++++. +.-......+..
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApTv---------qnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLg 129 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPTV---------QNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLG 129 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchhH---------HHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHH
Confidence 33444445665555555555555443 2367899999999999999999999873 223344567889
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHH
Q 004829 439 IGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIA 518 (728)
Q Consensus 439 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 518 (728)
++...+..+++..|...+++..+.- .....+.....+|.+|...|++.+|...|+.++..+.. .
T Consensus 130 lA~Aqfa~~~~A~a~~tLe~l~e~~------pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg----------~ 193 (251)
T COG4700 130 LAQAQFAIQEFAAAQQTLEDLMEYN------PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG----------P 193 (251)
T ss_pred HHHHHHhhccHHHHHHHHHHHhhcC------CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC----------H
Confidence 9999999999999999999888761 11223455677899999999999999999999998532 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 519 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
......+..+..+|+.++|...+....+...+
T Consensus 194 ~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 194 QARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 34555678889999999888877766555443
No 219
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.97 E-value=0.022 Score=61.51 Aligned_cols=188 Identities=12% Similarity=0.053 Sum_probs=126.3
Q ss_pred HhCCHHHHHHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHHH----HcCChHHHHHHHHHHHHHHcCCCCCCCcHHH
Q 004829 445 SLARFDEAIFSYHKALTAFKSAKGENHPAVA---SVFVRLADLYH----KIGKLRDSKSYCENALKIYGKPNHGIPSEEI 517 (728)
Q Consensus 445 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 517 (728)
-.|+-+.++..+.++.+. ... ..|... ..|+.....+. .....+.|...+......+ |.-
T Consensus 200 F~gdR~~GL~~L~~~~~~-~~i---~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---------P~s 266 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-ENI---RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---------PNS 266 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-CCc---chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---------CCc
Confidence 468999999999887652 111 111111 11111111111 2335567777777777764 345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004829 518 ASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS 597 (728)
Q Consensus 518 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 597 (728)
+..+...|+++...|+.++|+..|++++...... ......+++.++.++..+.+|++|..++.+..+. +.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~---~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-------s~ 336 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEW---KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-------SK 336 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH---HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------cc
Confidence 6678889999999999999999999988533322 1223456889999999999999999999988875 23
Q ss_pred HHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004829 598 ALFGIALNQMGLACVQRYTI-------NEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM 656 (728)
Q Consensus 598 ~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~ 656 (728)
...+...+..|.++...|+. ++|.++|.++-.+..+..+...|...-+. .-+.-|...
T Consensus 337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~-RK~~~~~~~ 401 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVI-RKAQKYEKQ 401 (468)
T ss_pred cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHH-HHHHHHHhc
Confidence 33466777888999999998 88889999888887776665555433332 333334443
No 220
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.012 Score=55.39 Aligned_cols=239 Identities=12% Similarity=0.072 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhhhhhhh----------hcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004829 268 CLHVLAAIHCSLGQYNEAIPVLERSVEIPVL----------EDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLE 337 (728)
Q Consensus 268 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 337 (728)
.|...-.++.++..+++|..-+.-.-++... .++......-+.....-|.+....|+..+.+.-+.....
T Consensus 71 ~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~ 150 (366)
T KOG2796|consen 71 LWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKT 150 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 3444455666677777776655543333210 011111111223344556667778888888776666555
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829 338 IQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYV 417 (728)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 417 (728)
..+++ -..+......+..+..+++-+. .+.+.+..++...+.|.-.+..+.
T Consensus 151 ~V~~i---------------i~~~e~~~~~ESsv~lW~KRl~--------------~Vmy~~~~~llG~kEy~iS~d~~~ 201 (366)
T KOG2796|consen 151 VVSKI---------------LANLEQGLAEESSIRLWRKRLG--------------RVMYSMANCLLGMKEYVLSVDAYH 201 (366)
T ss_pred HHHHH---------------HHHHHhccchhhHHHHHHHHHH--------------HHHHHHHHHHhcchhhhhhHHHHH
Confidence 53321 1112222223445555555443 246778889999999999999998
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHH
Q 004829 418 LASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSY 497 (728)
Q Consensus 418 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 497 (728)
+.+. .+++........+|.+.++.|+.+.|..+|++.-+...... +-.....+..+.+.+|.-.+++..|...
T Consensus 202 ~vi~-----~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~--~~q~~~~V~~n~a~i~lg~nn~a~a~r~ 274 (366)
T KOG2796|consen 202 SVIK-----YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD--GLQGKIMVLMNSAFLHLGQNNFAEAHRF 274 (366)
T ss_pred HHHH-----hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh--ccchhHHHHhhhhhheecccchHHHHHH
Confidence 8875 23455566788899999999999999999997765544442 2334556777888999999999999999
Q ss_pred HHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829 498 CENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 498 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 551 (728)
+.+++.. ++..+.+.++.|.|....|+...|++.++.++++.+..
T Consensus 275 ~~~i~~~---------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 275 FTEILRM---------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred Hhhcccc---------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9988877 33456778889999999999999999999998876654
No 221
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.94 E-value=2.7e-05 Score=75.29 Aligned_cols=94 Identities=18% Similarity=0.245 Sum_probs=85.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004829 564 QMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTL 643 (728)
Q Consensus 564 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 643 (728)
..|.-|+++|.|++|+.+|.+++.. .+..+..+.+.|.+|+++..|..|...+..|+.+ +....
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~ 165 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYV 165 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHH
Confidence 5688999999999999999999987 4445678899999999999999999999999999 77788
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 644 GVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 644 ~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
.+|...+.+...+|+..+|.+-++.++++-
T Consensus 166 KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 166 KAYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 899999999999999999999999999864
No 222
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.028 Score=54.97 Aligned_cols=165 Identities=11% Similarity=-0.030 Sum_probs=129.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHH
Q 004829 358 AEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDC 437 (728)
Q Consensus 358 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 437 (728)
+.+....|++.+|-...++.++-+|... .++..--..++..|+...-...+++.+.. -+.+.|-...+..
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDl--------la~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~G 179 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDL--------LAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHG 179 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhh--------hhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHH
Confidence 4456678899999888999988776543 23444556788889888888888776522 2455666678888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHH
Q 004829 438 SIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEI 517 (728)
Q Consensus 438 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 517 (728)
.++..+...|-|++|.+..++++++ ++....+...++.++...|++.++.++..+.-...+. .....
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~-----s~mla 246 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ-----SWMLA 246 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh-----hhHHH
Confidence 8899999999999999999999999 8888999999999999999999999999887665543 12334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829 518 ASGLIDIAAIYQSMNELEQAVKLLNKAL 545 (728)
Q Consensus 518 ~~~~~~la~~~~~~g~~~~A~~~~~~al 545 (728)
..-|...|.++...+.|+.|++.|.+-+
T Consensus 247 sHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 247 SHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 4556677888889999999999998643
No 223
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.88 E-value=5.1e-05 Score=58.76 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=54.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 607 MGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 607 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
|..+|...+++++|+.++++++.+ +|+....+..+|.++..+|++.+|+..|+++++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 356889999999999999999999 88999999999999999999999999999999853
No 224
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.88 E-value=0.025 Score=60.49 Aligned_cols=178 Identities=13% Similarity=0.092 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----HHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Q 004829 311 GCMQLGDTYAMLGQIENSILCYTAGLEI-----QRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENT 385 (728)
Q Consensus 311 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 385 (728)
.|..+|......-.++.|...|-++-.. .+++ .....--...|.+-..-|+|++|.+.|-.+-...
T Consensus 694 LWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-----~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 694 LWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-----RTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-----hhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 3888888887777788887777664322 1111 0000111234455555688999988876543211
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829 386 SPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKS 465 (728)
Q Consensus 386 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 465 (728)
....++...|++-...++++.. ....++.....++.++|..+..+..|++|.++|.+.-..
T Consensus 765 ------------LAielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--- 825 (1189)
T KOG2041|consen 765 ------------LAIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--- 825 (1189)
T ss_pred ------------hhHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---
Confidence 1122455566665555444321 112345566788999999999999999999998876332
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829 466 AKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLN 542 (728)
Q Consensus 466 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 542 (728)
-++..+|+...+|++-..+... -|+....+-.+|..+...|.-++|.+.|-
T Consensus 826 -------------e~~~ecly~le~f~~LE~la~~-------------Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 826 -------------ENQIECLYRLELFGELEVLART-------------LPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred -------------HhHHHHHHHHHhhhhHHHHHHh-------------cCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 2334555555555543332221 11223344556666666776666666554
No 225
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.045 Score=61.15 Aligned_cols=265 Identities=15% Similarity=0.138 Sum_probs=128.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829 312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE 391 (728)
Q Consensus 312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 391 (728)
|..+|.+....|...+|++.|-++- +| ..|.....+..+.|.|++-+.++..+.+...+..
T Consensus 1107 WsqlakAQL~~~~v~dAieSyikad----------Dp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~------ 1167 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIKAD----------DP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY------ 1167 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHHHhcC----------Cc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc------
Confidence 5566666666666666666554431 22 2344444455556666666655555544333221
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829 392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH 471 (728)
Q Consensus 392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 471 (728)
+-..|...|.+.++..+-.+++. .|..+. ....|.-++..|.|+.|.-+|...
T Consensus 1168 ---id~eLi~AyAkt~rl~elE~fi~-----------gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~v------------ 1220 (1666)
T KOG0985|consen 1168 ---IDSELIFAYAKTNRLTELEEFIA-----------GPNVAN-IQQVGDRCFEEKMYEAAKLLYSNV------------ 1220 (1666)
T ss_pred ---chHHHHHHHHHhchHHHHHHHhc-----------CCCchh-HHHHhHHHhhhhhhHHHHHHHHHh------------
Confidence 11123334444444444333221 122221 234555556666666555444322
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829 472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 472 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 551 (728)
.-+..||..+..+|+|+.|....++|-. ..+|...+..+...+++.-|.-+
T Consensus 1221 ----SN~a~La~TLV~LgeyQ~AVD~aRKAns--------------~ktWK~VcfaCvd~~EFrlAQiC----------- 1271 (1666)
T KOG0985|consen 1221 ----SNFAKLASTLVYLGEYQGAVDAARKANS--------------TKTWKEVCFACVDKEEFRLAQIC----------- 1271 (1666)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHhhhccc--------------hhHHHHHHHHHhchhhhhHHHhc-----------
Confidence 2244566666777777777666655432 23455555555555544433211
Q ss_pred CCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 552 PGQQS-TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 552 ~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
|... ..+.-+-.+...|...|-|++-+.+++.++-+-+. ..-.+..||.+|.+- ++++-.++++-....
T Consensus 1272 -GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA--------HMgmfTELaiLYsky-kp~km~EHl~LFwsR 1341 (1666)
T KOG0985|consen 1272 -GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA--------HMGMFTELAILYSKY-KPEKMMEHLKLFWSR 1341 (1666)
T ss_pred -CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH--------HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Confidence 1110 11223345667777788888888887777765222 223455666665543 455544444322211
Q ss_pred HH--HhcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 004829 631 LE--KEYGPYHHDTLGVYSNLAGTYDAMGRIDDAI 663 (728)
Q Consensus 631 ~~--~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 663 (728)
.. +.. ...+.+..|..|..+|.+-..|+.|.
T Consensus 1342 vNipKvi--RA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1342 VNIPKVI--RAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred cchHHHH--HHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 00 000 01122335666666776666666554
No 226
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.86 E-value=8e-05 Score=72.11 Aligned_cols=95 Identities=15% Similarity=0.155 Sum_probs=84.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHH
Q 004829 521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALF 600 (728)
Q Consensus 521 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 600 (728)
+...|.-|+++|+|++|+.+|.+++...+.. +..+.+.+.+|+++..|..|...+..|+.+ +..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N-------pV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y 164 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHN-------PVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLY 164 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCC-------ccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHH
Confidence 3557889999999999999999999887654 245678999999999999999999999998 5567
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 601 GIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
..+|...|.+...+|+..+|.+.++.++++
T Consensus 165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 889999999999999999999999999998
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.84 E-value=5e-05 Score=77.95 Aligned_cols=68 Identities=16% Similarity=0.110 Sum_probs=62.0
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH---HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTL---GVYSNLAGTYDAMGRIDDAIEILEYVVGM 672 (728)
Q Consensus 597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~La~~~~~~g~~~~A~~~~~~al~~ 672 (728)
.+..+.+++++|.+|..+|+|++|+..|++++++ +|+.. .+++++|.+|..+|++++|+.++++|+++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4456789999999999999999999999999999 66665 45999999999999999999999999996
No 228
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.84 E-value=3.2e-05 Score=52.28 Aligned_cols=41 Identities=41% Similarity=0.707 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH
Q 004829 643 LGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPD 683 (728)
Q Consensus 643 ~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~ 683 (728)
+.++.+||.+|..+|++++|+.++++++.+.++++|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 45789999999999999999999999999999999999995
No 229
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.045 Score=53.74 Aligned_cols=301 Identities=11% Similarity=0.055 Sum_probs=192.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCC
Q 004829 313 MQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDH----RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA 388 (728)
Q Consensus 313 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 388 (728)
+..+.......++++++..|...+...... ..++ ..-.+...++..|...|++.+-................+
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~--~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Ka- 84 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGA--SSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKA- 84 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccc--cCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhH-
Confidence 444555556677788888888887642111 1122 233467889999999999988777777666555444322
Q ss_pred cHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004829 389 SIEEAADRRLMGLICD-SKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK 467 (728)
Q Consensus 389 ~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 467 (728)
..+.....+-..+. .-+.+..-+..+...++...........-..-..+..+|...++|.+|+......+.-.++.
T Consensus 85 --kaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl- 161 (411)
T KOG1463|consen 85 --KAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL- 161 (411)
T ss_pred --HHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc-
Confidence 12233333333332 33455666777777776665544444444556778899999999999999999998888877
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 468 GENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEE-IASGLIDIAAIYQSMNELEQAVKLLNKALK 546 (728)
Q Consensus 468 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 546 (728)
+|.+....++..=..+|+.+.+..+|...+..|......+. .+|. .+..-..-|.++....+|.-|..||-+|.+
T Consensus 162 -DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiY---cpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfE 237 (411)
T KOG1463|consen 162 -DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIY---CPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFE 237 (411)
T ss_pred -ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccc---cCHHHHHHHHHhccceeecccccchHHHHHHHHHc
Confidence 45666777777778899999999999999988877765544 2333 333344456777778999999999999998
Q ss_pred HHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc--CCHHHHHHHH
Q 004829 547 IYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR--YTINEAADLF 624 (728)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~ 624 (728)
-+... +.+.....++..+-.+-...+..++--..+..=..+ + ..++ ...++..++.++... .+|+.|+.-|
T Consensus 238 gf~s~-~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l-~-y~g~----~i~AmkavAeA~~nRSLkdF~~AL~~y 310 (411)
T KOG1463|consen 238 GFDSL-DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLAL-K-YAGR----DIDAMKAVAEAFGNRSLKDFEKALADY 310 (411)
T ss_pred ccccc-CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHH-h-ccCc----chHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 87765 443333344444445555566666544433322211 1 1111 235666677776654 3677777777
Q ss_pred HHHHHH
Q 004829 625 EEARTI 630 (728)
Q Consensus 625 ~~al~~ 630 (728)
..-+..
T Consensus 311 k~eL~~ 316 (411)
T KOG1463|consen 311 KKELAE 316 (411)
T ss_pred HHHHhc
Confidence 665554
No 230
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.11 Score=58.15 Aligned_cols=231 Identities=16% Similarity=0.128 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829 266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE 345 (728)
Q Consensus 266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 345 (728)
...|..+|.+....|...+|++.|-+|- +|. .|.....+....|.|++-+.++..+-+..++..
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad----------Dps----~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~-- 1167 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD----------DPS----NYLEVIDVASRTGKYEDLVKYLLMARKKVREPY-- 1167 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC----------CcH----HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--
Confidence 3458889999999999999999998753 222 277888888899999999998887765533210
Q ss_pred CChHHHHH---------------------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Q 004829 346 TDHRVGET---------------------CRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICD 404 (728)
Q Consensus 346 ~~~~~~~~---------------------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~ 404 (728)
-+.....+ .-..|.-++..+.|+.|.-+|...- -+..|+..+.
T Consensus 1168 id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS----------------N~a~La~TLV 1231 (1666)
T KOG0985|consen 1168 IDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS----------------NFAKLASTLV 1231 (1666)
T ss_pred chHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh----------------hHHHHHHHHH
Confidence 00011111 1123333444445554444333221 2556778888
Q ss_pred HcCCHHHHHHHHHHHHHHH------------------HhcCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829 405 SKGDYEAALEHYVLASMSM------------------AANGHE-LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKS 465 (728)
Q Consensus 405 ~~g~~~~A~~~~~~al~~~------------------~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 465 (728)
.+|+|..|...-++|-..- ...+-+ .-.+.-+-.+...|...|-|++-+..++.++-+
T Consensus 1232 ~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL--- 1308 (1666)
T KOG0985|consen 1232 YLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL--- 1308 (1666)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch---
Confidence 8888888888777662110 000000 011233456667788888888888888888877
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 004829 466 AKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAV 538 (728)
Q Consensus 466 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 538 (728)
.....-.+..||.+|.+- ++++-.++++-......-.. -....+.+..|..+.-+|.+-..|+.|.
T Consensus 1309 -----ERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipK-viRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1309 -----ERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPK-VIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred -----hHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 444455677788777653 45555555443211100000 0001123455666666676666666553
No 231
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.77 E-value=5.9e-05 Score=57.45 Aligned_cols=67 Identities=18% Similarity=0.180 Sum_probs=55.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004829 569 YYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSN 648 (728)
Q Consensus 569 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 648 (728)
++..|++++|+..|++++.. .+....++..+|.+|...|++++|...+++++.. +|+....+..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--------~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--------DPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--------GTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCHHHHHHH
Confidence 35789999999999999988 4445678899999999999999999999999987 6766656555
Q ss_pred HHH
Q 004829 649 LAG 651 (728)
Q Consensus 649 La~ 651 (728)
++.
T Consensus 65 ~a~ 67 (68)
T PF14559_consen 65 LAQ 67 (68)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
No 232
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.76 E-value=0.077 Score=55.46 Aligned_cols=103 Identities=8% Similarity=-0.072 Sum_probs=68.3
Q ss_pred ChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829 262 SLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQ 341 (728)
Q Consensus 262 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 341 (728)
+|....+|+.|-.-+..+ -++++.+.|++.+..+ +..+. +|......-....+|+.-..+|.++|.-.-.
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-----P~s~r----~W~~yi~~El~skdfe~VEkLF~RCLvkvLn 85 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-----PSSPR----AWKLYIERELASKDFESVEKLFSRCLVKVLN 85 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-----CCCcH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 356677788887777666 9999999999998776 44443 3777777778889999999999999865321
Q ss_pred HcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829 342 VLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHR 382 (728)
Q Consensus 342 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 382 (728)
-+... ..|..+....++...+....-+|.++.-
T Consensus 86 ------lDLW~--lYl~YVR~~~~~~~~~r~~m~qAy~f~l 118 (656)
T KOG1914|consen 86 ------LDLWK--LYLSYVRETKGKLFGYREKMVQAYDFAL 118 (656)
T ss_pred ------HhHHH--HHHHHHHHHccCcchHHHHHHHHHHHHH
Confidence 12211 2233444455555555555555555443
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.74 E-value=9.2e-05 Score=76.05 Aligned_cols=68 Identities=16% Similarity=0.197 Sum_probs=53.5
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVA---SVFVRLADLYHKIGKLRDSKSYCENALKI 504 (728)
Q Consensus 429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (728)
.|..+..++++|.+|+.+|+|++|+..|++++++ .|... .+++++|.+|..+|++++|+.++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667778888888888888888888888888887 55554 45888888888888888888888888876
No 234
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.73 E-value=0.00015 Score=56.13 Aligned_cols=58 Identities=17% Similarity=0.130 Sum_probs=52.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 565 MGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 565 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
|..+|...++|++|+.++++++.+ .|.....+..+|.++...|++.+|...|+++++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 356889999999999999999998 4445688999999999999999999999999988
No 235
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.72 E-value=0.13 Score=63.05 Aligned_cols=409 Identities=11% Similarity=0.040 Sum_probs=204.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhH
Q 004829 227 KQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHAL 306 (728)
Q Consensus 227 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 306 (728)
.++..-++-+ .|..|+-++++--. ...+.......+..+-.+|...++++........-.. ..
T Consensus 1388 tLa~aSfrc~-~y~RalmylEs~~~------~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-------~~--- 1450 (2382)
T KOG0890|consen 1388 TLARASFRCK-AYARALMYLESHRS------TEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-------DP--- 1450 (2382)
T ss_pred HHHHHHHhhH-HHHHHHHHHHHhcc------ccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-------Cc---
Confidence 5666677775 78888888887410 0111122233355566689999999887776653111 01
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q 004829 307 AKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTS 386 (728)
Q Consensus 307 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 386 (728)
.+...-......|++..|..+|+++++. +|.....+..+-...+..|.+...+...+-...-..+
T Consensus 1451 ----sl~~qil~~e~~g~~~da~~Cye~~~q~--------~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se--- 1515 (2382)
T KOG0890|consen 1451 ----SLYQQILEHEASGNWADAAACYERLIQK--------DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSE--- 1515 (2382)
T ss_pred ----cHHHHHHHHHhhccHHHHHHHHHHhhcC--------CCccccchhhHHHhhhcccchhHHHhhhcchhhccCH---
Confidence 1445556667789999999999999887 4544444444444445555665555433322211100
Q ss_pred CCcHHHHHHHHHHH-HHHHHcCCHHHHHHHHH-----------HHHHHHHhcCCChhHHHHHHHHHHH----------HH
Q 004829 387 PASIEEAADRRLMG-LICDSKGDYEAALEHYV-----------LASMSMAANGHELDVASIDCSIGDA----------YL 444 (728)
Q Consensus 387 ~~~~~~a~~~~~lg-~~~~~~g~~~~A~~~~~-----------~al~~~~~~~~~~~~~~~~~~la~~----------~~ 444 (728)
...-++.++ .+.+..++++.-..+.. .+.........++ ...+..+... ..
T Consensus 1516 -----~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~--~~~~~~i~~~r~~~i~~lsa~s 1588 (2382)
T KOG0890|consen 1516 -----EVDELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDE--IATLDLIENSRELVIENLSACS 1588 (2382)
T ss_pred -----HHHHHHHHHHHHHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhcccch--hhHHHHHHHHHHHhhhhHHHhh
Confidence 011122221 12244455544443321 0000000000000 0111111111 01
Q ss_pred HhCCHHHHHHHHHHHHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCc
Q 004829 445 SLARFDEAIFSYHKALTAFKSA----------KGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPS 514 (728)
Q Consensus 445 ~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 514 (728)
..|-|..+.++.-+...+++-. .+.+......-|.+....-....+..+-+-.+++++-..... ..-.
T Consensus 1589 ~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~--~~~~ 1666 (2382)
T KOG0890|consen 1589 IEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMR--SNLK 1666 (2382)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhcc--cccc
Confidence 1113333333333332222110 001111111111111111111112333334444444332211 1225
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004829 515 EEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE 594 (728)
Q Consensus 515 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 594 (728)
...+.+|...|++....|+++.|..++-.|.+.. .+.++...|..++..|+-..|+..+++.++.......
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~ 1737 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR---------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLH 1737 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccccc
Confidence 5689999999999999999999999888887653 2457778999999999999999999999976543211
Q ss_pred ---------CCcHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH----------
Q 004829 595 ---------KKSALFGIALNQMGLACVQRYT--INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTY---------- 653 (728)
Q Consensus 595 ---------~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~---------- 653 (728)
.+......+...++......++ -.+-+.+|..+.++ +|.....++.||..|
T Consensus 1738 ~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai--------l~ewe~~hy~l~~yy~kll~~~~~~ 1809 (2382)
T KOG0890|consen 1738 TPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI--------LPEWEDKHYHLGKYYDKLLEDYKSN 1809 (2382)
T ss_pred CCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--------cccccCceeeHHHHHHHHhhhhhcc
Confidence 1111122344455555555555 34566778888888 554444556666443
Q ss_pred --HHcCChHH---HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 004829 654 --DAMGRIDD---AIEILEYVVGMREEKLGTANPDVEDEKRRLAE 693 (728)
Q Consensus 654 --~~~g~~~~---A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~ 693 (728)
.+.|++.. |+..|.+++..-.+.+-..-|.....|..+|.
T Consensus 1810 ~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t 1854 (2382)
T KOG0890|consen 1810 KMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGT 1854 (2382)
T ss_pred cccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcc
Confidence 23455555 55555555543222222223444444444433
No 236
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.71 E-value=0.092 Score=54.99 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004829 598 ALFGIALNQMGLACVQR------YTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM 656 (728)
Q Consensus 598 ~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~ 656 (728)
...+.++..+|...... +..+++...|.++..+ +|....+++.+|..+...
T Consensus 249 ~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 249 ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------DPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------ChhHHHHHHHHHHHHHHH
Confidence 34567788888888877 8899999999999999 888888999998887654
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.072 Score=52.23 Aligned_cols=167 Identities=8% Similarity=-0.071 Sum_probs=129.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHH
Q 004829 314 QLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEA 393 (728)
Q Consensus 314 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a 393 (728)
.-+.+....|++.+|...+++.++- .|....++..--.+++..|+...-...+++.+... + ++.+-..
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n--~dlp~~s 175 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--N--ADLPCYS 175 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--C--CCCcHHH
Confidence 3445566789999999999998877 67777777777788888999888888887776432 1 1223334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 004829 394 ADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPA 473 (728)
Q Consensus 394 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 473 (728)
.+.-.++..+...|-|++|.+.-.+++++ .+....+...++.++...|++.++.++..+.-...+.. .-.
T Consensus 176 Yv~GmyaFgL~E~g~y~dAEk~A~ralqi------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~ml 245 (491)
T KOG2610|consen 176 YVHGMYAFGLEECGIYDDAEKQADRALQI------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WML 245 (491)
T ss_pred HHHHHHHhhHHHhccchhHHHHHHhhccC------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hHH
Confidence 45566778888999999999999998866 56667788889999999999999999988776655533 444
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004829 474 VASVFVRLADLYHKIGKLRDSKSYCENAL 502 (728)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 502 (728)
...-|...|.++...+.|+.|++.|.+-+
T Consensus 246 asHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 246 ASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 55667788999999999999999998744
No 238
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.63 E-value=0.082 Score=55.40 Aligned_cols=133 Identities=13% Similarity=0.047 Sum_probs=98.2
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHH
Q 004829 555 QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEART-ILEK 633 (728)
Q Consensus 555 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~ 633 (728)
.......+..++.+..+.|+++.|...+.++.......... ...+....+.++...|+..+|+..++..+. ....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~----~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~ 217 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL----LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSK 217 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC----CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 44556788899999999999999999998887642111111 235677788999999999999999998887 3322
Q ss_pred h-------------------------cCCCChhHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHHHHHcCCCCh
Q 004829 634 E-------------------------YGPYHHDTLGVYSNLAGTYDAM------GRIDDAIEILEYVVGMREEKLGTANP 682 (728)
Q Consensus 634 ~-------------------------~~~~~~~~~~~~~~La~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~p 682 (728)
. ........+.++..+|...... +..+++...|.+++.+. |
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~--------~ 289 (352)
T PF02259_consen 218 NIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD--------P 289 (352)
T ss_pred ccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC--------h
Confidence 2 0112234566778888888888 88899999999999854 7
Q ss_pred HHHHHHHHHHHHHHHhC
Q 004829 683 DVEDEKRRLAELLKEAG 699 (728)
Q Consensus 683 ~~~~~~~~La~~~~~~g 699 (728)
....+++.+|..+...-
T Consensus 290 ~~~k~~~~~a~~~~~~~ 306 (352)
T PF02259_consen 290 SWEKAWHSWALFNDKLL 306 (352)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 77778888888777653
No 239
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.62 E-value=0.0047 Score=64.49 Aligned_cols=107 Identities=18% Similarity=0.217 Sum_probs=82.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004829 564 QMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTL 643 (728)
Q Consensus 564 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 643 (728)
..|..+..+|+...|+.++..|+... +......+.+||.+....|-...|-.++.+++.+. ....
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~-------p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------~sep 676 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLA-------PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------SSEP 676 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccC-------hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--------ccCc
Confidence 34555667899999999999998653 22223467889999999999999999999999983 2233
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 004829 644 GVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRR 690 (728)
Q Consensus 644 ~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~ 690 (728)
-..+.+|.+|..+.+.+.|++.|++|++.. +..|.....+..
T Consensus 677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-----~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 677 LTFLSLGNAYLALKNISGALEAFRQALKLT-----TKCPECENSLKL 718 (886)
T ss_pred hHHHhcchhHHHHhhhHHHHHHHHHHHhcC-----CCChhhHHHHHH
Confidence 467889999999999999999999999853 445554444433
No 240
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.57 E-value=0.0088 Score=53.58 Aligned_cols=126 Identities=21% Similarity=0.234 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHhCCCC
Q 004829 518 ASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSD-SYNTLKSAISKFRTSGEKK 596 (728)
Q Consensus 518 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~ 596 (728)
...+...|......++...++..+++++.++...+-..... ..|-. ....++..
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~--------------~~W~~~~r~~l~~~----------- 60 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD--------------EEWVEPERERLREL----------- 60 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT--------------STTHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc--------------cHHHHHHHHHHHHH-----------
Confidence 33444556666778889999999999998876442111000 11111 11112211
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004829 597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK 676 (728)
Q Consensus 597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~ 676 (728)
...++..++..+...|++++|+..+++++.+ +|....++..+..+|..+|+..+|+..|+++.....+-
T Consensus 61 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e 129 (146)
T PF03704_consen 61 ---YLDALERLAEALLEAGDYEEALRLLQRALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREE 129 (146)
T ss_dssp ---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 2356777888999999999999999999999 99999999999999999999999999999999999887
Q ss_pred cCC
Q 004829 677 LGT 679 (728)
Q Consensus 677 ~~~ 679 (728)
+|.
T Consensus 130 lg~ 132 (146)
T PF03704_consen 130 LGI 132 (146)
T ss_dssp HS-
T ss_pred hCc
Confidence 774
No 241
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00063 Score=62.95 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=88.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004829 563 AQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDT 642 (728)
Q Consensus 563 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 642 (728)
..-|..|+.-.+|..|+.+|-+++.+ .|..+..+.+.+.++++..+++.+.....+++++ .|+.
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N~ 77 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPNL 77 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChHH
Confidence 34466777788999999999999987 5666788999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004829 643 LGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKL 677 (728)
Q Consensus 643 ~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~ 677 (728)
+...+.||.+......+++|+..+.++..+.+...
T Consensus 78 vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 78 VKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999998876653
No 242
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.50 E-value=0.044 Score=60.78 Aligned_cols=281 Identities=14% Similarity=0.083 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 004829 325 IENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQS-----LQFDEAEKICQMALDIHRENTSPASIEEAADRRLM 399 (728)
Q Consensus 325 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l 399 (728)
...|..+++.+... ....+...+|.+|..- .+.+.|+.+|+.+...+....... ...+.+.+
T Consensus 228 ~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~l 294 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGL 294 (552)
T ss_pred hhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHH
Confidence 56778888777655 4456667777777654 589999999999987211110000 11246788
Q ss_pred HHHHHHcC-----CHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcCCCC
Q 004829 400 GLICDSKG-----DYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLA---RFDEAIFSYHKALTAFKSAKGENH 471 (728)
Q Consensus 400 g~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~ 471 (728)
|.+|.... +...|+.+|.++... ....+.+.+|.+|..-. ++..|..+|..|...
T Consensus 295 g~~Y~~g~~~~~~d~~~A~~~~~~aA~~--------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--------- 357 (552)
T KOG1550|consen 295 GRLYLQGLGVEKIDYEKALKLYTKAAEL--------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--------- 357 (552)
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHHhc--------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc---------
Confidence 99888753 678899999887642 33467788898888765 567899999888764
Q ss_pred HHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 004829 472 PAVASVFVRLADLYHK----IGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSM-NELEQAVKLLNKALK 546 (728)
Q Consensus 472 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 546 (728)
....+.+.+|.+|.. .-+...|..++.++.+.- + +.+...++.++..- +.+..+.-.+....+
T Consensus 358 -G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--------~---~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 358 -GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--------N---PSAAYLLGAFYEYGVGRYDTALALYLYLAE 425 (552)
T ss_pred -CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--------C---hhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 235667888888875 347889999999998872 1 22233344333322 666666666555444
Q ss_pred HHhcCCCCCCcHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc----CCHH
Q 004829 547 IYGKTPGQQSTIAGIEAQMGVMYYMT----GNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR----YTIN 618 (728)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~ 618 (728)
.--+.... .+..+.......... .+...+...+.++... ....+...+|.+|..- .+++
T Consensus 426 ~g~~~~q~---~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~a~~~lgd~y~~g~g~~~d~~ 492 (552)
T KOG1550|consen 426 LGYEVAQS---NAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ----------GNADAILKLGDYYYYGLGTGRDPE 492 (552)
T ss_pred hhhhHHhh---HHHHHHHhccccccccccccchhHHHHHHHHHHhc----------cCHHHHhhhcceeeecCCCCCChH
Confidence 42222100 011111111111111 1344455555544332 1246777888888764 3699
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---CChHHHHHHHHHHHH
Q 004829 619 EAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM---GRIDDAIEILEYVVG 671 (728)
Q Consensus 619 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~---g~~~~A~~~~~~al~ 671 (728)
.|...|..+... . ....+++|.++..- ..+..|.++|.++..
T Consensus 493 ~a~~~y~~a~~~--------~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 493 KAAAQYARASEQ--------G---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHHHHHHHh--------h---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 999999998875 3 67889999998762 126788888888876
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.48 E-value=0.012 Score=61.07 Aligned_cols=205 Identities=12% Similarity=0.063 Sum_probs=132.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCC-------
Q 004829 440 GDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGI------- 512 (728)
Q Consensus 440 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------- 512 (728)
..-..+..+...-++...+||++ .|+.+.+|..||.- ...-..+|..+|+++++..+......
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g 244 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHG 244 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhccc
Confidence 34445677888889999999999 88888888877752 23346788888888888665443211
Q ss_pred ---------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829 513 ---------PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLK 583 (728)
Q Consensus 513 ---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 583 (728)
+..-...+...+|.+..+.|+.++|++.++..++..+.. ....+..+|..+++.++.|.++...+.
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~-----~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL-----DNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc-----chhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 111124556789999999999999999999988765422 234578899999999999999987776
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004829 584 SAISKFRTSGEKKSALFGIALNQMGLACVQ-RYT---------------INEAADLFEEARTILEKEYGPYHHDTLGVYS 647 (728)
Q Consensus 584 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 647 (728)
+.-+ ... +..+...+.-|.+..+ .++ -..|.+.+.+|++. +|.+...+.
T Consensus 320 kYdD----i~l---pkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef--------NPHVp~YLL 384 (539)
T PF04184_consen 320 KYDD----ISL---PKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF--------NPHVPKYLL 384 (539)
T ss_pred Hhcc----ccC---CchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh--------CCCCchhhh
Confidence 6422 111 1123333333333222 111 23466777788777 666554332
Q ss_pred HH------HHHHHHcCChHHHHHHHHHHHHHHHH
Q 004829 648 NL------AGTYDAMGRIDDAIEILEYVVGMREE 675 (728)
Q Consensus 648 ~L------a~~~~~~g~~~~A~~~~~~al~~~~~ 675 (728)
.+ -.-+.+.|+ .||+.|.--.+..+++
T Consensus 385 e~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~ 417 (539)
T PF04184_consen 385 EMKSLILPPEHILKRGD-SEAIAYAFFHLQHWKR 417 (539)
T ss_pred ccCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhc
Confidence 21 112445565 7888877777766543
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.48 E-value=0.0096 Score=61.65 Aligned_cols=132 Identities=15% Similarity=0.106 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchh-
Q 004829 227 KQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHA- 305 (728)
Q Consensus 227 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~- 305 (728)
......++. .+++.-++...+|+.+. |+.+.+|..|+.-. ..-..+|..+|+++++..+...+....
T Consensus 173 ~IMq~AWRE-Rnp~aRIkaA~eALei~---------pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~ 240 (539)
T PF04184_consen 173 EIMQKAWRE-RNPQARIKAAKEALEIN---------PDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFL 240 (539)
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHhh---------hhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 444445555 48999999999999985 55577777776532 244688999999988865433222110
Q ss_pred ---------------HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHH
Q 004829 306 ---------------LAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEA 370 (728)
Q Consensus 306 ---------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 370 (728)
...+.+-..+|.|...+|+.++|++.++..++..+ ..+...+..+|..++...+.|.++
T Consensus 241 ~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~ 314 (539)
T PF04184_consen 241 QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADV 314 (539)
T ss_pred hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHH
Confidence 01122334555555555555555555555554411 112334555555555555555555
Q ss_pred HHHHHH
Q 004829 371 EKICQM 376 (728)
Q Consensus 371 ~~~~~~ 376 (728)
..++.+
T Consensus 315 q~lL~k 320 (539)
T PF04184_consen 315 QALLAK 320 (539)
T ss_pred HHHHHH
Confidence 544444
No 245
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.47 E-value=0.2 Score=52.59 Aligned_cols=441 Identities=13% Similarity=0.066 Sum_probs=232.7
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhh
Q 004829 214 AGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSV 293 (728)
Q Consensus 214 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 293 (728)
...++|.....|..+.+.+-.+ -++++.+.|++.+..+ |....+|.......+...+|+....+|.++|
T Consensus 12 rie~nP~di~sw~~lire~qt~--~~~~~R~~YEq~~~~F---------P~s~r~W~~yi~~El~skdfe~VEkLF~RCL 80 (656)
T KOG1914|consen 12 RIEENPYDIDSWSQLIREAQTQ--PIDKVRETYEQLVNVF---------PSSPRAWKLYIERELASKDFESVEKLFSRCL 80 (656)
T ss_pred HHhcCCccHHHHHHHHHHHccC--CHHHHHHHHHHHhccC---------CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3467888888998888877666 6999999999998764 4445556666777788899999999999988
Q ss_pred hhhhhhcCCchhHhHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH---------HH
Q 004829 294 EIPVLEDGQDHALAKFAGC-MQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAH---------VQ 363 (728)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~---------~~ 363 (728)
.-.- .+..| ..|..+....|+...+....-+|.++.....| .++.....|...+..+ ..
T Consensus 81 vkvL----------nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig-~di~s~siW~eYi~FL~~vea~gk~ee 149 (656)
T KOG1914|consen 81 VKVL----------NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIG-MDIKSYSIWDEYINFLEGVEAVGKYEE 149 (656)
T ss_pred HHHh----------hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHcccccccHHH
Confidence 5320 01112 22333444456655555555566555544333 2333334444433322 22
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCCC-----CcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC-C-------
Q 004829 364 SLQFDEAEKICQMALDIHRENTSP-----ASIE-EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGH-E------- 429 (728)
Q Consensus 364 ~g~~~~A~~~~~~al~~~~~~~~~-----~~~~-~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~------- 429 (728)
..+.+.-...|++++..--.+... .... .......--.+-...-.|..|...+++...+.+.... .
T Consensus 150 ~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~ 229 (656)
T KOG1914|consen 150 NQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKG 229 (656)
T ss_pred HHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Confidence 335566666777776311000000 0000 0000000111222334566666666665444322110 0
Q ss_pred ----hhHHHHHHHHHHHHHHhC------CH--HHHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHHHcCChHH
Q 004829 430 ----LDVASIDCSIGDAYLSLA------RF--DEAIFSYHKALTAFKSAKGENHP----AVASVFVRLADLYHKIGKLRD 493 (728)
Q Consensus 430 ----~~~~~~~~~la~~~~~~g------~~--~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~ 493 (728)
......|.++-..-...+ .. ..-.-.|++++...- .+| +....+...+.++...|+...
T Consensus 230 T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~-----~~peiWy~~s~yl~~~s~l~~~~~d~~~ 304 (656)
T KOG1914|consen 230 TKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLG-----YHPEIWYDYSMYLIEISDLLTEKGDVPD 304 (656)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHhhHHHHHhccccc
Confidence 011122222221111111 10 111223444443311 122 233444556667777777554
Q ss_pred -------HHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 004829 494 -------SKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMN---ELEQAVKLLNKALKIYGKTPGQQSTIAGIEA 563 (728)
Q Consensus 494 -------A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 563 (728)
+..+|++++.... ......++.++..-...- .++....++++++.+....+ + .++.
T Consensus 305 a~~~t~e~~~~yEr~I~~l~--------~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~----t--Lv~~ 370 (656)
T KOG1914|consen 305 AKSLTDEAASIYERAIEGLL--------KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL----T--LVYC 370 (656)
T ss_pred chhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC----c--eehh
Confidence 4555555554421 112333444443332222 25666677777777654432 1 2333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004829 564 QMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMG-LACVQRYTINEAADLFEEARTILEKEYGPYHHDT 642 (728)
Q Consensus 564 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 642 (728)
.+-..-.+..-...|...|.+|-+. ....+ .++..-| .-|...++.+-|...|+-.+.. +++.
T Consensus 371 ~~mn~irR~eGlkaaR~iF~kaR~~----~r~~h----hVfVa~A~mEy~cskD~~~AfrIFeLGLkk--------f~d~ 434 (656)
T KOG1914|consen 371 QYMNFIRRAEGLKAARKIFKKARED----KRTRH----HVFVAAALMEYYCSKDKETAFRIFELGLKK--------FGDS 434 (656)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhc----cCCcc----hhhHHHHHHHHHhcCChhHHHHHHHHHHHh--------cCCC
Confidence 4444445555566677777776543 11111 1222222 2345678999999999999887 4444
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcc
Q 004829 643 LGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNS 717 (728)
Q Consensus 643 ~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~ 717 (728)
...-......+...++-..|..+|++++.. .+ .-.....+|..+-..-..-|+...++ +.-+......|
T Consensus 435 p~yv~~YldfL~~lNdd~N~R~LFEr~l~s---~l--~~~ks~~Iw~r~l~yES~vGdL~si~-~lekR~~~af~ 503 (656)
T KOG1914|consen 435 PEYVLKYLDFLSHLNDDNNARALFERVLTS---VL--SADKSKEIWDRMLEYESNVGDLNSIL-KLEKRRFTAFP 503 (656)
T ss_pred hHHHHHHHHHHHHhCcchhHHHHHHHHHhc---cC--ChhhhHHHHHHHHHHHHhcccHHHHH-HHHHHHHHhcc
Confidence 444455556778899999999999999874 11 11234566777777777888888877 55555444444
No 246
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.45 E-value=0.00028 Score=47.57 Aligned_cols=41 Identities=39% Similarity=0.442 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004829 601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHD 641 (728)
Q Consensus 601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 641 (728)
+.++.++|.+|..+|++++|+.++++++.+.++.+|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46789999999999999999999999999999999999885
No 247
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00081 Score=62.27 Aligned_cols=100 Identities=21% Similarity=0.331 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcH
Q 004829 436 DCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSE 515 (728)
Q Consensus 436 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 515 (728)
+..-|..++.-.+|+.|+..|.+++.+ +|..+..+.+.+.+|++..+++.+.....+++++ .+
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql---------~~ 75 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL---------DP 75 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc---------Ch
Confidence 344566777788999999999999998 9999999999999999999999999999999999 57
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004829 516 EIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTP 552 (728)
Q Consensus 516 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 552 (728)
..+..++.+|........|++|+..++++..+....+
T Consensus 76 N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 76 NLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999999887653
No 248
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.44 E-value=0.023 Score=51.45 Aligned_cols=97 Identities=14% Similarity=0.078 Sum_probs=77.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004829 562 EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHD 641 (728)
Q Consensus 562 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 641 (728)
...++..+...+++++|+..++.++... .+......+-.+||.+..++|++++|+..+..... +..
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~~w 157 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIKE---------ESW 157 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------ccH
Confidence 4567888899999999999999988642 22334466778899999999999999988776433 223
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 642 TLGVYSNLAGTYDAMGRIDDAIEILEYVVGM 672 (728)
Q Consensus 642 ~~~~~~~La~~~~~~g~~~~A~~~~~~al~~ 672 (728)
........|.++...|+.++|+..|+++++.
T Consensus 158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 158 AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 4445667899999999999999999999985
No 249
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0014 Score=63.75 Aligned_cols=106 Identities=14% Similarity=0.097 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcC
Q 004829 265 QVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLG 344 (728)
Q Consensus 265 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 344 (728)
.+.-+-.-|+-|+...+|..|+..|.+.|+.. ..++...+.+|.+.|.+....|+|..|+....+++.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------ 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK-----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------ 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 45556777999999999999999999999764 4444556678999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829 345 ETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRE 383 (728)
Q Consensus 345 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 383 (728)
+|....+++.-|.|++.+.++++|..+++..+.+..+
T Consensus 149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 8999999999999999999999999999999876543
No 250
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.38 E-value=0.053 Score=60.12 Aligned_cols=282 Identities=15% Similarity=0.054 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-----CChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHH
Q 004829 239 PQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSL-----GQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCM 313 (728)
Q Consensus 239 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 313 (728)
...|..+++.+... ....+...+|.+|..- .+.+.|+.+|+.+............+. +.+
T Consensus 228 ~~~a~~~~~~~a~~-----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~----a~~ 292 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL-----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPP----AQY 292 (552)
T ss_pred hhHHHHHHHHHHhh-----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCc----ccc
Confidence 46778888777663 2345566778887654 679999999999987211001111222 378
Q ss_pred HHHHHHHHhC-----CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHcC
Q 004829 314 QLGDTYAMLG-----QIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSL---QFDEAEKICQMALDIHRENT 385 (728)
Q Consensus 314 ~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~ 385 (728)
.+|.+|.... ++..|+.+|.++... ....+.+.+|.+|..-. ++..|..+|..|....
T Consensus 293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---- 358 (552)
T KOG1550|consen 293 GLGRLYLQGLGVEKIDYEKALKLYTKAAEL----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---- 358 (552)
T ss_pred HHHHHHhcCCCCccccHHHHHHHHHHHHhc----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC----
Confidence 8999998854 678899999988776 44567888888887665 5678888888886432
Q ss_pred CCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHH
Q 004829 386 SPASIEEAADRRLMGLICDS----KGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSL-ARFDEAIFSYHKAL 460 (728)
Q Consensus 386 ~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al 460 (728)
...+.+.++.+|.. .-+...|..++.++.+. ..+.+...++.++..- ++++.+.-.+....
T Consensus 359 ------~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~--------g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 359 ------HILAIYRLALCYELGLGVERNLELAFAYYKKAAEK--------GNPSAAYLLGAFYEYGVGRYDTALALYLYLA 424 (552)
T ss_pred ------ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc--------cChhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence 12357777777764 34788999999988643 1223344444444332 77777777666555
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHc----C
Q 004829 461 TAFKSAKGENHPAVASVFVRLADLYHKI----GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSM----N 532 (728)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g 532 (728)
++--.. ....+..+.......... .+...+...+.++... ....+...+|.+|+.- .
T Consensus 425 ~~g~~~----~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-----------g~~~a~~~lgd~y~~g~g~~~ 489 (552)
T KOG1550|consen 425 ELGYEV----AQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ-----------GNADAILKLGDYYYYGLGTGR 489 (552)
T ss_pred HhhhhH----HhhHHHHHHHhccccccccccccchhHHHHHHHHHHhc-----------cCHHHHhhhcceeeecCCCCC
Confidence 542211 111111111111111111 1344555555554433 2345677788887654 4
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHH
Q 004829 533 ELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMT---GNYSDSYNTLKSAISK 588 (728)
Q Consensus 533 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~ 588 (728)
+++.|...|..+.... +...+++|.++..- ..+..|..+|.++.+.
T Consensus 490 d~~~a~~~y~~a~~~~----------~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQG----------AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred ChHHHHHHHHHHHHhh----------hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 6889999998887543 34567888887532 1267888888888664
No 251
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.38 E-value=0.019 Score=47.10 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=86.9
Q ss_pred HHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 560 GIEAQMG--VMYYMTGNYSDSYNTLKSAISKFRTSGEKKS----ALFGIALNQMGLACVQRYTINEAADLFEEARTILEK 633 (728)
Q Consensus 560 ~~~~~la--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 633 (728)
.+|..|+ .-.+.-|-|++|...+++|+++.+.+..... -..+.++..|+.++..+|+|++++..-..++..+.+
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 3444443 3446678999999999999999887755432 234678889999999999999999999999998877
Q ss_pred hcCCC---ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004829 634 EYGPY---HHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLG 678 (728)
Q Consensus 634 ~~~~~---~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~ 678 (728)
...-. -...+.+.++.|..+...|+.++|+..|+.+.++..+.-|
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 54321 1234556778899999999999999999999998776555
No 252
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.37 E-value=0.38 Score=53.69 Aligned_cols=231 Identities=16% Similarity=0.105 Sum_probs=137.4
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHH
Q 004829 232 MISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAG 311 (728)
Q Consensus 232 ~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 311 (728)
....+ ++.+|+....+.++.+ |....+...-|..+.++|++++|..+++..-... ..+ -.+
T Consensus 19 ~ld~~-qfkkal~~~~kllkk~---------Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-----~~D----~~t 79 (932)
T KOG2053|consen 19 LLDSS-QFKKALAKLGKLLKKH---------PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-----GTD----DLT 79 (932)
T ss_pred HhhhH-HHHHHHHHHHHHHHHC---------CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-----CCc----hHH
Confidence 44454 7888888888887642 4444445557888999999999997665433221 222 224
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829 312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE 391 (728)
Q Consensus 312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 391 (728)
+-.+-.+|..++++++|..+|++++.. .|. -..+..+-.+|.+.+.|.+-.+. +++++...+.....
T Consensus 80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~~pk~~yy- 146 (932)
T KOG2053|consen 80 LQFLQNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKNFPKRAYY- 146 (932)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhCCcccch-
Confidence 788899999999999999999999988 566 56677777788888888765544 33444333322211
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHH-----HHHHHHHH-HHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829 392 EAADRRLMGLICDSKGDYEAALE-----HYVLASMS-MAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKS 465 (728)
Q Consensus 392 ~a~~~~~lg~~~~~~g~~~~A~~-----~~~~al~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 465 (728)
.|..+..+.......+.+.. +-++.... ....+.-...+.+. ..-.++..+|++++|.+.+..-+. ..
T Consensus 147 ---fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la--~~ 220 (932)
T KOG2053|consen 147 ---FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLA--EK 220 (932)
T ss_pred ---HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHH--Hh
Confidence 23334444444433333333 11111111 11111111222222 222456778999999998843322 22
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 466 AKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI 504 (728)
Q Consensus 466 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (728)
. .+............+...+++.+-.+...+++..
T Consensus 221 l----~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 221 L----TSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred c----cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 1 2223333344556677788888887777777766
No 253
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.37 E-value=0.3 Score=52.61 Aligned_cols=166 Identities=14% Similarity=0.112 Sum_probs=88.6
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhh----hhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004829 259 GKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV----LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTA 334 (728)
Q Consensus 259 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 334 (728)
..|+|.. |..+|......-.++-|...|-+.-.... +..+.-+. --...|.+-..-|.|++|...|-.
T Consensus 688 dnPHprL---WrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s-----~~~q~aei~~~~g~feeaek~yld 759 (1189)
T KOG2041|consen 688 DNPHPRL---WRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHS-----KEQQRAEISAFYGEFEEAEKLYLD 759 (1189)
T ss_pred cCCchHH---HHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhh-----HHHHhHhHhhhhcchhHhhhhhhc
Confidence 4566655 66677777776777777777766443210 00001111 023445555566888888877754
Q ss_pred H------HHHHHHH--------------cCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHH
Q 004829 335 G------LEIQRQV--------------LGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAA 394 (728)
Q Consensus 335 a------l~~~~~~--------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~ 394 (728)
+ ++++.++ .+.++.....++.++|..+..+..+++|.++|...-..
T Consensus 760 ~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------------- 825 (1189)
T KOG2041|consen 760 ADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------------- 825 (1189)
T ss_pred cchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------------
Confidence 3 2222221 02233445567777777777777777777776654321
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004829 395 DRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHK 458 (728)
Q Consensus 395 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 458 (728)
-.+..+++...+|++-..+... -|+....+-.+|.++...|-.++|.+.|-+
T Consensus 826 --e~~~ecly~le~f~~LE~la~~----------Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 826 --ENQIECLYRLELFGELEVLART----------LPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred --HhHHHHHHHHHhhhhHHHHHHh----------cCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 1233444444444433222111 133344555677777777777777776643
No 254
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.36 E-value=0.037 Score=45.45 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=89.1
Q ss_pred HHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHhcCCCCCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 517 IASGLIDIAAI--YQSMNELEQAVKLLNKALKIYGKTPGQQS-----TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKF 589 (728)
Q Consensus 517 ~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 589 (728)
++.+|..|+.. ....|-|++|..-+.+++++....|.... .-+.++..|+.++..+|+|++++.....++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 45556555544 45568899999999999999988765432 345677889999999999999999999999998
Q ss_pred HHhCCCCc---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004829 590 RTSGEKKS---ALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG 636 (728)
Q Consensus 590 ~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 636 (728)
..-++-+. .....+.++.|.++...|+.++|+..|+.+.++..+..|
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 87665432 334556778899999999999999999999998766544
No 255
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0052 Score=59.91 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=95.3
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829 553 GQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILE 632 (728)
Q Consensus 553 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 632 (728)
+.++..+.-+..-|.-|++..+|..|+..|.+++.. . -.++...+..|.+.|-+.+..|+|..|+.-..+++.+
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--k--c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~-- 148 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--K--CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL-- 148 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--c--CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 445556777778899999999999999999999875 2 2234557889999999999999999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004829 633 KEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMRE 674 (728)
Q Consensus 633 ~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~ 674 (728)
.|....+++.=|.|+..+.++.+|..+.+..+.+..
T Consensus 149 ------~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 149 ------KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred ------CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 999999999999999999999999999998877643
No 256
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.28 E-value=0.0057 Score=58.11 Aligned_cols=100 Identities=13% Similarity=0.097 Sum_probs=81.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-----ChhHHHHH
Q 004829 572 TGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY-----HHDTLGVY 646 (728)
Q Consensus 572 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~ 646 (728)
...+++|+..|.-|+-...-.... +...+.++..+|++|...|+.+....++++|+..+.+.+... .-+...++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~-~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEK-PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 456788888888888776555544 456788999999999999999999999999998888776432 22446688
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 647 SNLAGTYDAMGRIDDAIEILEYVVGM 672 (728)
Q Consensus 647 ~~La~~~~~~g~~~~A~~~~~~al~~ 672 (728)
+.+|.++.+.|++++|..+|.+++..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999874
No 257
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.24 E-value=0.05 Score=55.71 Aligned_cols=178 Identities=12% Similarity=0.065 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHHcCCC
Q 004829 433 ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK---IGKLRDSKSYCENALKIYGKPN 509 (728)
Q Consensus 433 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~ 509 (728)
..+..++-..|....+|+.-+.+.+..-.+-. .+-+....+...+|.++.+ .|+.++|+..+..++.....
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~----~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~-- 214 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPT----CDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN-- 214 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCc----cchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC--
Confidence 34556666778888999888887776544300 0123345566778888888 89999999999987665322
Q ss_pred CCCCcHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004829 510 HGIPSEEIASGLIDIAAIYQSM---------NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYN 580 (728)
Q Consensus 510 ~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 580 (728)
..+.++..+|.+|... ...++|+..|.++.++.+... .-.+++.++...|...+...
T Consensus 215 ------~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y--------~GIN~AtLL~~~g~~~~~~~ 280 (374)
T PF13281_consen 215 ------PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY--------SGINAATLLMLAGHDFETSE 280 (374)
T ss_pred ------CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc--------chHHHHHHHHHcCCcccchH
Confidence 2345677788877542 246788888888887753321 11366667777776444433
Q ss_pred HHHHHH-H---HHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 581 TLKSAI-S---KFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 581 ~~~~al-~---~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
-+++.. . +..+.+.......-+.+..++.+..-.|++++|...+++++.+
T Consensus 281 el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 281 ELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 333333 1 2222222222223456667788888999999999999999987
No 258
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.22 E-value=0.014 Score=53.76 Aligned_cols=126 Identities=17% Similarity=0.231 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCH
Q 004829 455 SYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL 534 (728)
Q Consensus 455 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 534 (728)
-++.-++.++...+ ......++..+|..|.+.|+++.|++.|.++.+.... .......+..+..+....+++
T Consensus 18 ~Le~elk~~~~n~~--kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------~~~~id~~l~~irv~i~~~d~ 89 (177)
T PF10602_consen 18 KLEAELKDAKSNLG--KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS------PGHKIDMCLNVIRVAIFFGDW 89 (177)
T ss_pred HHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------HHHHHHHHHHHHHHHHHhCCH
Confidence 33444444443322 5567788999999999999999999999998876433 456788899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 535 EQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKF 589 (728)
Q Consensus 535 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 589 (728)
.....++.++..+.... +++.........-|..++..++|.+|...|-.+...+
T Consensus 90 ~~v~~~i~ka~~~~~~~-~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 90 SHVEKYIEKAESLIEKG-GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 99999999999888774 5554455555667888888999999999988876543
No 259
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.39 Score=50.67 Aligned_cols=236 Identities=14% Similarity=0.067 Sum_probs=138.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829 312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE 391 (728)
Q Consensus 312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 391 (728)
.+.-+..+...|+.+.|+..+..++....+ .-...+++.+|.++..+.+|..|-..+....+...-.
T Consensus 270 ll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS------- 336 (546)
T KOG3783|consen 270 LLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWS------- 336 (546)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhh-------
Confidence 567788888888899999999988873222 3445678889999999999999999888877654321
Q ss_pred HHHHHHHHH-HHHH--------HcCCHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004829 392 EAADRRLMG-LICD--------SKGDYEAALEHYVLASMSMAANGH-ELDVASIDCSIGDAYLSLARFDEAIFSYHKALT 461 (728)
Q Consensus 392 ~a~~~~~lg-~~~~--------~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 461 (728)
.+ .|..++ .++. ..|+-+.|..+++....+....+. .|.. .. ..+++-.
T Consensus 337 ~a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E-~f-------------------~~RKver 395 (546)
T KOG3783|consen 337 HA-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLE-KF-------------------IVRKVER 395 (546)
T ss_pred HH-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchh-HH-------------------HHHHHHH
Confidence 11 233333 3332 133555555555544444333221 1111 01 1111111
Q ss_pred HHHHhcCCCCHHH--HHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Q 004829 462 AFKSAKGENHPAV--ASVFVRLADLYHKIG--KLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQA 537 (728)
Q Consensus 462 ~~~~~~~~~~~~~--~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 537 (728)
..... . -.+.. +..+..++.++.... ...+.. ++....+... -.+..+..--+..+|.++..+|+...|
T Consensus 396 f~~~~-~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~-~~d~Dd~~lk~lL~g~~lR~Lg~~~~a 468 (546)
T KOG3783|consen 396 FVKRG-P-LNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPK-IDDSDDEGLKYLLKGVILRNLGDSEVA 468 (546)
T ss_pred Hhccc-c-ccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccC-CCCchHHHHHHHHHHHHHHHcCCHHHH
Confidence 11100 0 00000 001233333322211 122222 2222222221 114455666778899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Q 004829 538 VKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGN-YSDSYNTLKSAISK 588 (728)
Q Consensus 538 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 588 (728)
..+|..+++-......+....+.+++.+|.+|..++. ..++..++.+|-+.
T Consensus 469 ~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 469 PKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 9999998876554445555677889999999999999 99999999998765
No 260
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.20 E-value=0.23 Score=51.06 Aligned_cols=207 Identities=11% Similarity=0.016 Sum_probs=124.1
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHH
Q 004829 446 LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIA 525 (728)
Q Consensus 446 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la 525 (728)
...+..+...+.+.+...+..++...-....+..++-..|....+|+.=+.+.+..-.+- ..+......+....|
T Consensus 112 re~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p-----~~~~~~~~~i~~~ya 186 (374)
T PF13281_consen 112 RERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALP-----TCDVANQHNIKFQYA 186 (374)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccC-----ccchhcchHHHHHHH
Confidence 444444555566666665555443233345566777778999999988888877655441 111233445566778
Q ss_pred HHHHH---cCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhC
Q 004829 526 AIYQS---MNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMT---------GNYSDSYNTLKSAISKFRTSG 593 (728)
Q Consensus 526 ~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~ 593 (728)
.++.+ .|+.++|+..+..++..... ..+.++..+|.+|... ...++|+..|.++.++-
T Consensus 187 fALnRrn~~gdre~Al~il~~~l~~~~~------~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~---- 256 (374)
T PF13281_consen 187 FALNRRNKPGDREKALQILLPVLESDEN------PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE---- 256 (374)
T ss_pred HHHhhcccCCCHHHHHHHHHHHHhccCC------CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC----
Confidence 88888 89999999999887543221 2245666777777432 23566777777776652
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc----CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829 594 EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEY----GPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYV 669 (728)
Q Consensus 594 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a 669 (728)
+. ...-.+++.++...|...+...-.++....+.... ........+.+..++.+....|++++|..+++++
T Consensus 257 ---~~--~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~ 331 (374)
T PF13281_consen 257 ---PD--YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKA 331 (374)
T ss_pred ---cc--ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 12234455566666653333333333331111111 1122234455667888888999999999999999
Q ss_pred HHH
Q 004829 670 VGM 672 (728)
Q Consensus 670 l~~ 672 (728)
+.+
T Consensus 332 ~~l 334 (374)
T PF13281_consen 332 FKL 334 (374)
T ss_pred hhc
Confidence 985
No 261
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.012 Score=54.86 Aligned_cols=105 Identities=17% Similarity=0.149 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC---cH-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 560 GIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK---SA-------LFGIALNQMGLACVQRYTINEAADLFEEART 629 (728)
Q Consensus 560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 629 (728)
.++..-|.-++.+|+|.+|...|+.|+..++.+.-.. .+ .....+.+++.|++..|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 3456778899999999999999999999887653211 11 1234678899999999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 630 ILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM 672 (728)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~ 672 (728)
. +|....+|+..|.+....=+..+|..-|.+++++
T Consensus 259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 259 H--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred c--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 8 9999999999999999999999999999999984
No 262
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.19 E-value=0.36 Score=49.69 Aligned_cols=142 Identities=9% Similarity=-0.003 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhH-hHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCC
Q 004829 269 LHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHAL-AKFAGCM-QLGDTYAMLGQIENSILCYTAGLEIQRQVLGET 346 (728)
Q Consensus 269 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 346 (728)
+...|.++..++++.+|...|.++..-.. ..+. ..-.++. .+-.+| -++ .+...+..+...++.
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~-----~~~f~lkeEvl~grilnAf-fl~----nld~Me~~l~~l~~~---- 74 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKE-----SSPFLLKEEVLGGRILNAF-FLN----NLDLMEKQLMELRQQ---- 74 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhh-----cchHHHHHHHHhhHHHHHH-HHh----hHHHHHHHHHHHHHh----
Confidence 44568899999999999999999876531 1111 1111222 222333 233 344444444444444
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCc-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829 347 DHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPAS-------IEEAADRRLMGLICDSKGDYEAALEHYVLA 419 (728)
Q Consensus 347 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 419 (728)
.|.........|...++.+.|.+|++.+..-.........+.. ......-...+.++...|.+.++...+++.
T Consensus 75 ~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i 154 (549)
T PF07079_consen 75 FGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI 154 (549)
T ss_pred cCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 3444455666788889999999999887766544322221100 000111234577888999999999999988
Q ss_pred HHHHH
Q 004829 420 SMSMA 424 (728)
Q Consensus 420 l~~~~ 424 (728)
+..+-
T Consensus 155 ~~~ll 159 (549)
T PF07079_consen 155 IERLL 159 (549)
T ss_pred HHHHh
Confidence 76543
No 263
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=0.9 Score=56.34 Aligned_cols=359 Identities=10% Similarity=-0.008 Sum_probs=180.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchh-HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChH
Q 004829 271 VLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHA-LAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHR 349 (728)
Q Consensus 271 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 349 (728)
.+|.+-++.+.|.+|+.++++- .. .+.. ...-..++.+-.+|...++++.-.-....-.. +|.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~------~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---------~~s 1451 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RS------TEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---------DPS 1451 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-cc------ccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---------Ccc
Confidence 6788889999999999999984 11 1111 11122355666689999998876655543110 222
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 004829 350 VGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHE 429 (728)
Q Consensus 350 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 429 (728)
+...-..+...|++..|..+|++++...+..... +...-......|.+...+...+-... . .
T Consensus 1452 ----l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~--------~~g~l~sml~~~~l~t~i~~~dg~~~-----~-~ 1513 (2382)
T KOG0890|consen 1452 ----LYQQILEHEASGNWADAAACYERLIQKDPDKEKH--------HSGVLKSMLAIQHLSTEILHLDGLII-----N-R 1513 (2382)
T ss_pred ----HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccc--------hhhHHHhhhcccchhHHHhhhcchhh-----c-c
Confidence 2233345667899999999999999776553211 22222333444555555443322110 0 1
Q ss_pred hhHHHHHHHHH-HHHHHhCCHHHHHHHHH-------HHHHHHHHhcCCCCHHHHHHHHHHHHH----------HHHcCCh
Q 004829 430 LDVASIDCSIG-DAYLSLARFDEAIFSYH-------KALTAFKSAKGENHPAVASVFVRLADL----------YHKIGKL 491 (728)
Q Consensus 430 ~~~~~~~~~la-~~~~~~g~~~~A~~~~~-------~al~~~~~~~~~~~~~~~~~~~~la~~----------~~~~g~~ 491 (728)
.+...-+++++ .+.+..++++.-..+.. .+..+..-.+.....+....+..+... ....|-|
T Consensus 1514 se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy 1593 (2382)
T KOG0890|consen 1514 SEEVDELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSY 1593 (2382)
T ss_pred CHHHHHHHHHHHHHHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchH
Confidence 11111111111 12244444444333311 000000000000000000000000000 0011123
Q ss_pred HHHHHHHHHHHH---------HHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHH
Q 004829 492 RDSKSYCENALK---------IYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIE 562 (728)
Q Consensus 492 ~~A~~~~~~al~---------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 562 (728)
..+.++.-+... ...+..++.+......-|.+....-....+..+-+-.+++++-.....++....++.+|
T Consensus 1594 ~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~w 1673 (2382)
T KOG0890|consen 1594 VRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECW 1673 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHH
Confidence 333333222211 11111111111111122222222211222244445555666555544445667889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CC--CC
Q 004829 563 AQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEY-GP--YH 639 (728)
Q Consensus 563 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~--~~ 639 (728)
...|.+....|+++.|..++-.|.+.. .+.++...|..+...|+-..|+..+++.+....... ++ +.
T Consensus 1674 LqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1674 LQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred HHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 999999999999999999988887651 356888899999999999999999999997654321 11 01
Q ss_pred hh------HHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHH
Q 004829 640 HD------TLGVYSNLAGTYDAMGRI--DDAIEILEYVVGMR 673 (728)
Q Consensus 640 ~~------~~~~~~~La~~~~~~g~~--~~A~~~~~~al~~~ 673 (728)
|. ...+...++......|++ .+-+.+|..+.++.
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail 1785 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAIL 1785 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHc
Confidence 11 122344455555555653 34455666666654
No 264
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.013 Score=54.59 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-----CCCh-------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004829 394 ADRRLMGLICDSKGDYEAALEHYVLASMSMAAN-----GHEL-------DVASIDCSIGDAYLSLARFDEAIFSYHKALT 461 (728)
Q Consensus 394 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 461 (728)
.++..-|+-++..|+|.+|...|..|+...... +..| .....+.+++.|+...|+|-+++++....|.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 357778999999999999999999998655322 2222 2345688999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 462 AFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI 504 (728)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (728)
. +|.+..+|+..|.++...-+.++|...|.+++++
T Consensus 259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 259 H--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred c--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 8 9999999999999999999999999999999998
No 265
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.11 E-value=0.031 Score=49.97 Aligned_cols=108 Identities=19% Similarity=0.126 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchh-------------HhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829 269 LHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHA-------------LAKFAGCMQLGDTYAMLGQIENSILCYTAG 335 (728)
Q Consensus 269 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 335 (728)
+...|......|+...++..+++++.+.....-+..+ ...+.++..++..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3344666667788899999999999887422211110 113345678888899999999999999999
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 004829 336 LEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHREN 384 (728)
Q Consensus 336 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 384 (728)
+.. +|..-.++..+-.+|...|+...|+..|++......+.
T Consensus 89 l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e 129 (146)
T PF03704_consen 89 LAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREE 129 (146)
T ss_dssp HHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred Hhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 999 89999999999999999999999999999998877654
No 266
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.06 E-value=0.025 Score=52.10 Aligned_cols=125 Identities=13% Similarity=0.119 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHH
Q 004829 416 YVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSK 495 (728)
Q Consensus 416 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 495 (728)
++.-+.-+..+.....+..++..+|..|...|+++.|++.|.++.+.+. ........++.+..+....+++....
T Consensus 19 Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~~v~ 93 (177)
T PF10602_consen 19 LEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWSHVE 93 (177)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3333444444555667778899999999999999999999999877632 24456778888999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 496 SYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY 548 (728)
Q Consensus 496 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 548 (728)
.++.++-.+..... +..........-|..+...++|..|...|-.+...+
T Consensus 94 ~~i~ka~~~~~~~~---d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 94 KYIEKAESLIEKGG---DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhccc---hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 99999999887732 334444555666777888899999998887765433
No 267
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.02 E-value=0.0012 Score=44.88 Aligned_cols=42 Identities=21% Similarity=0.158 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004829 602 IALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAG 651 (728)
Q Consensus 602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~ 651 (728)
.++..+|.+|...|++++|+..|+++++. +|+...++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 46788999999999999999999999999 8888888888875
No 268
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.00 E-value=0.0086 Score=56.92 Aligned_cols=100 Identities=18% Similarity=0.142 Sum_probs=80.9
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC-----CcHHHHHHHH
Q 004829 531 MNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEK-----KSALFGIALN 605 (728)
Q Consensus 531 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~~ 605 (728)
...+++|+..|.-|+-...-........+.++..+|++|..+|+.+....++++|+..+.+.... .......+++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 45678899999888877765545556788899999999999999998888888888887765221 1223457888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 606 QMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 606 ~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
.+|.+..+.|++++|..+|.+++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 9999999999999999999998875
No 269
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.95 E-value=0.0083 Score=53.69 Aligned_cols=86 Identities=21% Similarity=0.239 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004829 575 YSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY----------TINEAADLFEEARTILEKEYGPYHHDTLG 644 (728)
Q Consensus 575 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 644 (728)
|+.|.+.++..... +|..+..+++-|.++..+. .+++|+.-|++|+.+ +|+...
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--------~P~~hd 70 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--------NPNKHD 70 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---------TT-HH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--------CCchHH
Confidence 34455555555444 3334667777777776653 355666667777777 888999
Q ss_pred HHHHHHHHHHHcC----ChHHHHHHHHHHHHHHHHH
Q 004829 645 VYSNLAGTYDAMG----RIDDAIEILEYVVGMREEK 676 (728)
Q Consensus 645 ~~~~La~~~~~~g----~~~~A~~~~~~al~~~~~~ 676 (728)
+++++|.+|..++ +..+|..+|++|...+++.
T Consensus 71 Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkA 106 (186)
T PF06552_consen 71 ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKA 106 (186)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 9999999998765 3445666666665555443
No 270
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.95 E-value=0.081 Score=48.07 Aligned_cols=101 Identities=14% Similarity=0.024 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 004829 393 AADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP 472 (728)
Q Consensus 393 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 472 (728)
..+...++..+...|++++|+..++.++.. ..+......+-.+||.+...+|.+++|+..+...-. +.
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~~ 156 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKE---------ES 156 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------cc
Confidence 344567888999999999999999987643 233444566778999999999999999988765533 44
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 473 AVASVFVRLADLYHKIGKLRDSKSYCENALKIY 505 (728)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 505 (728)
.........|.++...|+-++|+..|++++...
T Consensus 157 w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 157 WAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 456667778999999999999999999999884
No 271
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.81 Score=49.10 Aligned_cols=106 Identities=13% Similarity=0.154 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcC
Q 004829 222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDG 301 (728)
Q Consensus 222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 301 (728)
-..|.+.|...+.. ++|..++++|...+..+... ..+...+.....++.||..+.+.+.|.+++++|-+..
T Consensus 354 H~iLWn~A~~~F~~-~~Y~~s~~~y~~Sl~~i~~D---~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d----- 424 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKM-EKYVVSIRFYKLSLKDIISD---NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD----- 424 (872)
T ss_pred HHHHHHhhHHHHHH-HHHHHHHHHHHHHHHhccch---hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-----
Confidence 34567778888888 49999999999999876432 2234567788899999999999999999999998764
Q ss_pred CchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829 302 QDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQR 340 (728)
Q Consensus 302 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 340 (728)
+..+.. ...+-.+....|.-++|+.+.........
T Consensus 425 ~~~~l~----q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 425 RQSPLC----QLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred cccHHH----HHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 333332 45566677778999999999888776643
No 272
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.87 E-value=0.0024 Score=43.49 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 004829 311 GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAE 359 (728)
Q Consensus 311 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 359 (728)
+++.+|.+|...|++++|+.+|+++++. +|+...++..+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 4889999999999999999999999999 7888888888875
No 273
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.85 E-value=1.2 Score=50.00 Aligned_cols=215 Identities=18% Similarity=0.105 Sum_probs=124.6
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHH
Q 004829 210 DPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVL 289 (728)
Q Consensus 210 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 289 (728)
+.......+|+..-+..-.|..+++.| ..++|..+.+.. .. .. +..-..+..+-.+|..++++++|..+|
T Consensus 31 ~~~kllkk~Pn~~~a~vLkaLsl~r~g-k~~ea~~~Le~~-~~------~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 31 KLGKLLKKHPNALYAKVLKALSLFRLG-KGDEALKLLEAL-YG------LK--GTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHhc-CchhHHHHHhhh-cc------CC--CCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 334455678888888888999999997 899999555443 22 11 113445777899999999999999999
Q ss_pred HHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHH-HHHHHHHHHHHhCCHH
Q 004829 290 ERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGE-TCRYVAEAHVQSLQFD 368 (728)
Q Consensus 290 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~ 368 (728)
++++..+ +.. ..++.+-.+|.+.+.|.+-.+. ++++++. -|..+. .|.-+..+.......+
T Consensus 101 e~~~~~~-----P~e-----ell~~lFmayvR~~~yk~qQka---a~~LyK~-----~pk~~yyfWsV~Slilqs~~~~~ 162 (932)
T KOG2053|consen 101 ERANQKY-----PSE-----ELLYHLFMAYVREKSYKKQQKA---ALQLYKN-----FPKRAYYFWSVISLILQSIFSEN 162 (932)
T ss_pred HHHHhhC-----CcH-----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHh-----CCcccchHHHHHHHHHHhccCCc
Confidence 9999765 221 2366677777777777654333 3333332 222222 2222333333222222
Q ss_pred H---------HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 004829 369 E---------AEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSI 439 (728)
Q Consensus 369 ~---------A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 439 (728)
. |...+++.++. .+.......+ ...-.++..+|++++|.+.+..-+ .... .+.........
T Consensus 163 ~~~~~i~l~LA~~m~~~~l~~---~gk~~s~aE~---~Lyl~iL~~~~k~~eal~~l~~~l--a~~l--~~~~~~l~~~~ 232 (932)
T KOG2053|consen 163 ELLDPILLALAEKMVQKLLEK---KGKIESEAEI---ILYLLILELQGKYQEALEFLAITL--AEKL--TSANLYLENKK 232 (932)
T ss_pred ccccchhHHHHHHHHHHHhcc---CCccchHHHH---HHHHHHHHhcccHHHHHHHHHHHH--HHhc--cccchHHHHHH
Confidence 2 23333333322 1111112222 222346677899999999885332 1111 12222333445
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHH
Q 004829 440 GDAYLSLARFDEAIFSYHKALTA 462 (728)
Q Consensus 440 a~~~~~~g~~~~A~~~~~~al~~ 462 (728)
...+...++|.+-.+...+++..
T Consensus 233 ~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 233 LDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHHhcChHHHHHHHHHHHHh
Confidence 66777788888888777777765
No 274
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.83 E-value=0.00093 Score=42.35 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004829 623 LFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE 664 (728)
Q Consensus 623 ~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 664 (728)
+|++|+++ +|+...++++||.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 47889999 99999999999999999999999963
No 275
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.82 E-value=0.028 Score=45.76 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=64.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcCCCh---hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 004829 402 ICDSKGDYEAALEHYVLASMSMAANGHEL---DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVF 478 (728)
Q Consensus 402 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 478 (728)
.....|+|..|++.+.+............ ....++.++|.++...|++++|+..+++++.+.++. .|......++
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al 84 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYAL 84 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHH
Confidence 34578999999999999988877666555 567788899999999999999999999999999987 3445555555
Q ss_pred HHHHHH
Q 004829 479 VRLADL 484 (728)
Q Consensus 479 ~~la~~ 484 (728)
..+..+
T Consensus 85 ~~~~~l 90 (94)
T PF12862_consen 85 SWLANL 90 (94)
T ss_pred HHHHHH
Confidence 555544
No 276
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.73 E-value=0.0044 Score=39.33 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 601 GIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
+.+++.+|.+|..+|++++|+.+|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 357899999999999999999999999998
No 277
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.65 E-value=0.041 Score=44.73 Aligned_cols=83 Identities=17% Similarity=0.107 Sum_probs=68.0
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 004829 361 HVQSLQFDEAEKICQMALDIHRENTSPA-SIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSI 439 (728)
Q Consensus 361 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 439 (728)
....|+|..|++.+.+..+......... ......++..+|.++...|++++|+..+++++.+.+..++......++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4578999999999999999887776543 123345678899999999999999999999999999999888887777776
Q ss_pred HHHH
Q 004829 440 GDAY 443 (728)
Q Consensus 440 a~~~ 443 (728)
..+.
T Consensus 88 ~~l~ 91 (94)
T PF12862_consen 88 ANLL 91 (94)
T ss_pred HHHh
Confidence 6553
No 278
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.63 E-value=0.031 Score=56.08 Aligned_cols=136 Identities=12% Similarity=0.088 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 004829 395 DRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLS-LARFDEAIFSYHKALTAFKSAKGENHPA 473 (728)
Q Consensus 395 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~ 473 (728)
+|..+.....+.+..+.|...|.+|+ ........+|...|.+-+. .++.+.|...|+.+++. .+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~------~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------f~~ 68 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRAR------KDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------FPS 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--------HTT
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHH------cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------CCC
Confidence 35556666677777999999999886 2233445678888888777 56666699999999988 444
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 474 VASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
....+......+...++.+.|..+|++++..... ......+|......-...|+.+....+.+++.+.++.
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~------~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPK------EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC------HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 5566777778889999999999999999876321 2214567777888888899999999999999988765
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.55 E-value=0.0062 Score=39.22 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004829 645 VYSNLAGTYDAMGRIDDAIEILEYVVGMREE 675 (728)
Q Consensus 645 ~~~~La~~~~~~g~~~~A~~~~~~al~~~~~ 675 (728)
++.+||.+|..+|++++|+.+|++++.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999877643
No 280
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.51 E-value=0.0068 Score=38.43 Aligned_cols=30 Identities=33% Similarity=0.614 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829 433 ASIDCSIGDAYLSLARFDEAIFSYHKALTA 462 (728)
Q Consensus 433 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 462 (728)
+.+|+++|.+|..+|++++|+..|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 357888999999999999999999999887
No 281
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.43 E-value=0.0024 Score=40.50 Aligned_cols=33 Identities=30% Similarity=0.550 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHH
Q 004829 455 SYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSK 495 (728)
Q Consensus 455 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 495 (728)
+|++++++ +|....++++||.+|...|++++|+
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 37889998 9999999999999999999999986
No 282
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.42 E-value=0.74 Score=49.36 Aligned_cols=221 Identities=14% Similarity=0.180 Sum_probs=118.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH-----H------HHcCC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 354 CRYVAEAHVQSLQFDEAEKICQMALDI-----H------RENTS-PASIEEAADRRLMGLICDSKGDYEAALEHYVLASM 421 (728)
Q Consensus 354 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~------~~~~~-~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 421 (728)
|..||.-....-+++-|.+.|.+..++ . .+.+. ++ -..++.++...|+|.+|.+.|.+.
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-------~iLlA~~~Ay~gKF~EAAklFk~~-- 658 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-------DLLLADVFAYQGKFHEAAKLFKRS-- 658 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-------HHHHHHHHHhhhhHHHHHHHHHHc--
Confidence 555666666666777777776655321 1 11111 11 235677778888888888877643
Q ss_pred HHHhcCCChhHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHH
Q 004829 422 SMAANGHELDVAS-----IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKS 496 (728)
Q Consensus 422 ~~~~~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 496 (728)
+....... -.+.++.-++..|..++-..+.++-.+-+... ..|.. -|.++...|+.++|+.
T Consensus 659 -----G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~---kePka------AAEmLiSaGe~~KAi~ 724 (1081)
T KOG1538|consen 659 -----GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI---KEPKA------AAEMLISAGEHVKAIE 724 (1081)
T ss_pred -----CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc---CCcHH------HHHHhhcccchhhhhh
Confidence 11111111 12344555555565555555544443333322 12322 3566777888888876
Q ss_pred HH------HHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHH
Q 004829 497 YC------ENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYY 570 (728)
Q Consensus 497 ~~------~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~ 570 (728)
.. +-++++.+++. ......+..++..+.....+.-|.+.|.+.-.+ ..+..++.
T Consensus 725 i~~d~gW~d~lidI~rkld-----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------------ksiVqlHv 784 (1081)
T KOG1538|consen 725 ICGDHGWVDMLIDIARKLD-----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------------KSLVQLHV 784 (1081)
T ss_pred hhhcccHHHHHHHHHhhcc-----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------------HHHhhhee
Confidence 43 33455544432 222334444555555555555555555543211 13455666
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829 571 MTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEAR 628 (728)
Q Consensus 571 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 628 (728)
..++|.+|..+.++- +.....+++..|+.+....++++|.+.|.+|-
T Consensus 785 e~~~W~eAFalAe~h-----------Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 785 ETQRWDEAFALAEKH-----------PEFKDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred ecccchHhHhhhhhC-----------ccccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 778888876655443 22234556666777777777777777776553
No 283
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=96.41 E-value=1 Score=44.20 Aligned_cols=221 Identities=10% Similarity=-0.022 Sum_probs=125.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChh-HHHHH-HHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC
Q 004829 225 LLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLE-QVMCL-HVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ 302 (728)
Q Consensus 225 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~-~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 302 (728)
-+++.++++..| ++.+|+..+++=+..+........... ....+ ..++.-|. ---++++++..........
T Consensus 13 ~~ki~rl~l~~~-~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~------~fAeL~~~~~~~~l~~~~~ 85 (247)
T PF11817_consen 13 AFKICRLYLWLN-QPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQ------VFAELLEEAPISGLTPPST 85 (247)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHH------HHHHHHHhcccccCCCCCC
Confidence 466788899996 899999999999888877754311111 11111 22333322 2223444444221111112
Q ss_pred chhHhHHHHHHHHHHHHHHhCCHHHHHHHH---H--HHHHHHHHHcCC----CChHHHHHHHHHHHHHHHhCCHHHHHHH
Q 004829 303 DHALAKFAGCMQLGDTYAMLGQIENSILCY---T--AGLEIQRQVLGE----TDHRVGETCRYVAEAHVQSLQFDEAEKI 373 (728)
Q Consensus 303 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~---~--~al~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~ 373 (728)
.+|- .|+..+..+... +...|.... . .+-.+....++. ..|.....+............-...+.+
T Consensus 86 ~~pG----~yy~~AA~~~~~-Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~l 160 (247)
T PF11817_consen 86 QHPG----FYYQIAAKHAVE-RRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIEL 160 (247)
T ss_pred CCcc----hHHHHHHHHHHH-HHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHH
Confidence 2222 244444443321 112222211 0 000000000000 1111222222222111223344567888
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHH
Q 004829 374 CQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAI 453 (728)
Q Consensus 374 ~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 453 (728)
+.+|+..+...... -....+...+|..|+..|++++|+.+|+.+...++..+.......++..+..|+...|+.+..+
T Consensus 161 L~~A~~~f~~~~~~--R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l 238 (247)
T PF11817_consen 161 LEKAYEQFKKYGQN--RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYL 238 (247)
T ss_pred HHHHHHHHHHhccc--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 89998888776642 2334456789999999999999999999998888888888888899999999999999999887
Q ss_pred HHHHHH
Q 004829 454 FSYHKA 459 (728)
Q Consensus 454 ~~~~~a 459 (728)
.+.-+.
T Consensus 239 ~~~leL 244 (247)
T PF11817_consen 239 TTSLEL 244 (247)
T ss_pred HHHHHH
Confidence 765544
No 284
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.41 E-value=1.8 Score=46.52 Aligned_cols=392 Identities=14% Similarity=0.056 Sum_probs=220.5
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhh
Q 004829 214 AGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSV 293 (728)
Q Consensus 214 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 293 (728)
....-|..-..+..-|..-+..| ..+.++..|++++..++.. .......++.+--..|+.+.-...|++|.
T Consensus 71 fL~kyPl~~gyW~kfA~~E~klg-~~~~s~~Vfergv~aip~S--------vdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 71 FLSKYPLCYGYWKKFADYEYKLG-NAENSVKVFERGVQAIPLS--------VDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHhhCccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhhhH--------HHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 34456777777888888888897 8999999999999876432 11122234444446677778888888888
Q ss_pred hhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH--HHHhCCHHHHH
Q 004829 294 EIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEA--HVQSLQFDEAE 371 (728)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~ 371 (728)
.......-. ++ .|-..-..-..++++..-...|++.++.-...+ +....-+..+..- .......+++.
T Consensus 142 ~~vG~dF~S-~~-----lWdkyie~en~qks~k~v~~iyeRileiP~~~~----~~~f~~f~~~l~~~~~~~l~~~d~~~ 211 (577)
T KOG1258|consen 142 SYVGLDFLS-DP-----LWDKYIEFENGQKSWKRVANIYERILEIPLHQL----NRHFDRFKQLLNQNEEKILLSIDELI 211 (577)
T ss_pred Hhcccchhc-cH-----HHHHHHHHHhccccHHHHHHHHHHHHhhhhhHh----HHHHHHHHHHHhcCChhhhcCHHHHH
Confidence 765321111 11 122223333556777777778887777622110 0011111111100 00011222222
Q ss_pred HHHHHHHH----------------HHHHcCCC-CcHHHHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHH--HhcC
Q 004829 372 KICQMALD----------------IHRENTSP-ASIEEAAD-----RRLMGLICDSKGDYEAALEHYVLASMSM--AANG 427 (728)
Q Consensus 372 ~~~~~al~----------------~~~~~~~~-~~~~~a~~-----~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~ 427 (728)
+.-..... .......+ ........ ....-.++...-...+.+..++..+... ...+
T Consensus 212 ~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkp 291 (577)
T KOG1258|consen 212 QLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKP 291 (577)
T ss_pred HHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCc
Confidence 22111111 00000000 00000100 0001112222222333333333333211 1122
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829 428 HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK 507 (728)
Q Consensus 428 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (728)
..+.....|......-...|+++...-.|++++-- .......|...+......|+.+-|...+..+.++..+
T Consensus 292 l~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~--------cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k 363 (577)
T KOG1258|consen 292 LDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP--------CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK 363 (577)
T ss_pred ccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--------HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC
Confidence 33444566777777888999999999999999876 4455677888888888889999999999999988644
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 508 PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAIS 587 (728)
Q Consensus 508 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 587 (728)
....+...-+.+....|++..|...++....-++.. ..+-..-.....+.|+.+.+.. +...+.
T Consensus 364 --------~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~-------v~~~l~~~~~e~r~~~~~~~~~-~~~l~s 427 (577)
T KOG1258|consen 364 --------KTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGL-------VEVVLRKINWERRKGNLEDANY-KNELYS 427 (577)
T ss_pred --------CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCch-------hhhHHHHHhHHHHhcchhhhhH-HHHHHH
Confidence 234556666778888999999999999888765322 2222334455667788877764 333333
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004829 588 KFRTSGEKKSALFGIALNQMGLAC-VQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG 657 (728)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g 657 (728)
.... +..+.......+...++.. .-.++.+.|...+.+++++ .|.....+..+..+....+
T Consensus 428 ~~~~-~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~--------~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 428 SIYE-GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI--------LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred Hhcc-cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--------CCccHHHHHHHHHHHHhCC
Confidence 2221 2222333445555566543 3457899999999999988 6666666666666555544
No 285
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.16 Score=49.40 Aligned_cols=155 Identities=16% Similarity=0.132 Sum_probs=96.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHH
Q 004829 522 IDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFG 601 (728)
Q Consensus 522 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 601 (728)
...+.-....|++.+|...|..++...++. ..+...++.+|...|+.+.|...+...=.-. ...-.
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-------~~~~~ 203 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPEN-------SEAKLLLAECLLAAGDVEAAQAILAALPLQA-------QDKAA 203 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCccc-------chHHHHHHHHHHHcCChHHHHHHHHhCcccc-------hhhHH
Confidence 344556778899999999999999987766 3466789999999999999987776532110 00001
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004829 602 IALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTAN 681 (728)
Q Consensus 602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 681 (728)
..+...-.++.+.....+... +++.+.. +|+...+.+.||..|...|+.++|++.+-..+.. -.+..
T Consensus 204 ~~l~a~i~ll~qaa~~~~~~~-l~~~~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~---d~~~~- 270 (304)
T COG3118 204 HGLQAQIELLEQAAATPEIQD-LQRRLAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRR---DRGFE- 270 (304)
T ss_pred HHHHHHHHHHHHHhcCCCHHH-HHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---ccccc-
Confidence 111111122222222222211 2222222 7878889999999999999999999887666553 22222
Q ss_pred hHHHHHHHHHHHHHHHhCChhHHH
Q 004829 682 PDVEDEKRRLAELLKEAGRVRNRK 705 (728)
Q Consensus 682 p~~~~~~~~La~~~~~~g~~~~A~ 705 (728)
...+...|-.++...|..+.+.
T Consensus 271 --d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 271 --DGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred --CcHHHHHHHHHHHhcCCCCHHH
Confidence 2345556666666666555544
No 286
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.39 E-value=0.017 Score=51.78 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 004829 617 INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRI---DDAIEILEYVVGMREEKLGTANPDVEDEKRRLAE 693 (728)
Q Consensus 617 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~ 693 (728)
++.|.+.++..... +|...+.+++-|.++..+.++ .++..+++.++.-+++.+. -+|+..++++.+|.
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHH
Confidence 56677777776666 788888888888888776443 3455555555555444433 35888999999999
Q ss_pred HHHHhCC-----------hhHHHHHHHHHHHhhcccc
Q 004829 694 LLKEAGR-----------VRNRKSRSLVTFLDSNSQN 719 (728)
Q Consensus 694 ~~~~~g~-----------~~~A~~~~l~~ll~~~~~~ 719 (728)
+|..++. +++|. .+++.+.+.+|.+
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~-~~FqkAv~~~P~n 113 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKAT-EYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHH-HHHHHHHHH-TT-
T ss_pred HHHHHHhhcCChHHHHHHHHHHH-HHHHHHHhcCCCc
Confidence 9998765 55566 7777777777764
No 287
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.37 E-value=0.0093 Score=37.73 Aligned_cols=29 Identities=31% Similarity=0.281 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 602 IALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
.+++.+|.++...|++++|+.+|++++.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999998
No 288
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.34 E-value=0.0088 Score=37.84 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 518 ASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 518 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
+.++..+|.++..+|++++|+.+|++++.+.++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 357899999999999999999999999998764
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.32 E-value=0.011 Score=38.00 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Q 004829 353 TCRYVAEAHVQSLQFDEAEKICQMALDIHRENT 385 (728)
Q Consensus 353 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 385 (728)
++..||.+|...|+|++|+.+|++++.+.....
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 478899999999999999999999997766543
No 290
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.25 E-value=2.2 Score=45.95 Aligned_cols=152 Identities=8% Similarity=-0.031 Sum_probs=82.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHH------HHHHHHHHHhcCCC
Q 004829 397 RLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSY------HKALTAFKSAKGEN 470 (728)
Q Consensus 397 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~ 470 (728)
+.++.-+...|..++-..+.++-..-+..... |. .-|.++...|+.++|+... +-++++.++.
T Consensus 674 FD~aQE~~~~g~~~eKKmL~RKRA~WAr~~ke-Pk------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl---- 742 (1081)
T KOG1538|consen 674 FDYAQEFLGSGDPKEKKMLIRKRADWARNIKE-PK------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL---- 742 (1081)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHhhhcCC-cH------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----
Confidence 34444555555555444444433222222222 11 1244566667777776543 3344444443
Q ss_pred CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
+......+..++..+..+..+.-|.+.|.+.-++ ..+..++...+++.+|..+.++--+..
T Consensus 743 d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-----------------ksiVqlHve~~~W~eAFalAe~hPe~~-- 803 (1081)
T KOG1538|consen 743 DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-----------------KSLVQLHVETQRWDEAFALAEKHPEFK-- 803 (1081)
T ss_pred chhhhhHHHHHHHHHhhccccchHHHHHHHhccH-----------------HHHhhheeecccchHhHhhhhhCcccc--
Confidence 3344445555666666666666666666553222 224456677788888876655432222
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829 551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAI 586 (728)
Q Consensus 551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 586 (728)
..+|+-.|..+....+|++|.+.|.+|-
T Consensus 804 --------~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 804 --------DDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred --------ccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 2345566777788888888887776653
No 291
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.24 E-value=0.037 Score=55.54 Aligned_cols=136 Identities=10% Similarity=0.027 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829 561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQ-RYTINEAADLFEEARTILEKEYGPYH 639 (728)
Q Consensus 561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 639 (728)
+|..+.....+.+..+.|...|.+|++. ......+|...|.+.+. .++.+.|...|+.+++. .
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------f 66 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------F 66 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--------H
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------C
Confidence 4555667777777799999999999632 11123567778888666 56777799999999998 4
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829 640 HDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ 718 (728)
Q Consensus 640 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~ 718 (728)
+.....+......+...|+.+.|..+|++++... +.......++......-...|+.+... +..+.+.+..+.
T Consensus 67 ~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~-~v~~R~~~~~~~ 139 (280)
T PF05843_consen 67 PSDPDFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVR-KVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHH-HHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhhh
Confidence 5555667777788889999999999999998742 111113467777888888899888777 666666655444
No 292
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.46 Score=46.39 Aligned_cols=132 Identities=19% Similarity=0.110 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC
Q 004829 223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ 302 (728)
Q Consensus 223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 302 (728)
..-+..+..+...| ++.+|...+..++... ++...+...++.||...|+.+.|...+...-.-. .
T Consensus 135 e~~~~~~~~~~~~e-~~~~a~~~~~~al~~~---------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-----~ 199 (304)
T COG3118 135 EEALAEAKELIEAE-DFGEAAPLLKQALQAA---------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-----Q 199 (304)
T ss_pred HHHHHHhhhhhhcc-chhhHHHHHHHHHHhC---------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-----h
Confidence 34566677888886 9999999999999874 3335567789999999999999999987643211 1
Q ss_pred chhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829 303 DHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIH 381 (728)
Q Consensus 303 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 381 (728)
............+..-....++... +++.+.. +|....+-+.+|..+...|+++.|.+.+-..+...
T Consensus 200 ~~~~~~l~a~i~ll~qaa~~~~~~~----l~~~~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAATPEIQD----LQRRLAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHH----HHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 1111001111222222222233222 2222222 78888899999999999999999998877766544
No 293
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.95 E-value=0.0069 Score=62.39 Aligned_cols=110 Identities=17% Similarity=0.133 Sum_probs=93.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004829 563 AQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDT 642 (728)
Q Consensus 563 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 642 (728)
-.-+.-++..+.|+.|+..|.+|+++ ++..+..+.+.+.+++..+++..|+.-+.+|+++ +|..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~ 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence 34566778889999999999999998 5666778888899999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Q 004829 643 LGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLK 696 (728)
Q Consensus 643 ~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~ 696 (728)
..+|+..|.++...+.+.+|+..|+....+. |....+...+.++-.
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~--------Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKLA--------PNDPDATRKIDECNK 117 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhcC--------cCcHHHHHHHHHHHH
Confidence 9999999999999999999999999988854 666666666655543
No 294
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.86 E-value=1.1 Score=45.51 Aligned_cols=169 Identities=20% Similarity=0.140 Sum_probs=114.7
Q ss_pred HHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHHcCCCChH
Q 004829 274 AIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAML----GQIENSILCYTAGLEIQRQVLGETDHR 349 (728)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~ 349 (728)
......+++..|...+..+-... . ......++.+|... .+..+|..+|+.+.. ..
T Consensus 49 ~~~~~~~~~~~a~~~~~~a~~~~-------~----~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g 107 (292)
T COG0790 49 AGSAYPPDYAKALKSYEKAAELG-------D----AAALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DG 107 (292)
T ss_pred ccccccccHHHHHHHHHHhhhcC-------C----hHHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cc
Confidence 33445677888888888776521 1 13477778877654 367889998885443 35
Q ss_pred HHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHH
Q 004829 350 VGETCRYVAEAHVQ----SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKG-------DYEAALEHYVL 418 (728)
Q Consensus 350 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g-------~~~~A~~~~~~ 418 (728)
...+.+.||.+|.. ..++.+|..+|.++........ ..+...++.+|..-. +...|+..|.+
T Consensus 108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~ 180 (292)
T COG0790 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRK 180 (292)
T ss_pred cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHH
Confidence 55678889998887 4489999999999986532110 233667777776542 23367778777
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Q 004829 419 ASMSMAANGHELDVASIDCSIGDAYLS----LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIG 489 (728)
Q Consensus 419 al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 489 (728)
+... ....+...+|.+|.. ..++.+|..+|.++.+. .. ....+.++ ++...|
T Consensus 181 aa~~--------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~--------g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 181 AAEL--------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ--------GD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHh--------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------CC--HHHHHHHH-HHHhcC
Confidence 6543 245677888877755 34889999999999886 22 66677777 666655
No 295
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=95.81 E-value=2 Score=41.69 Aligned_cols=185 Identities=16% Similarity=0.147 Sum_probs=107.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 004829 478 FVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQ-SMNELEQAVKLLNKALKIYGKTPGQQS 556 (728)
Q Consensus 478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~ 556 (728)
+..+|.+....|+|++...++++++..... -...-...++.+|- ..|....+...+.......... +...
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~e--------Lt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~-~~~~ 74 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPE--------LTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENK-GNEK 74 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TTHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCC--------CCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhccc-chhH
Confidence 567899999999999999999999988322 12233344444442 2344455555554444333322 1111
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC---CcHHHHHHHHHHHHHHHHc-----C-----CHHHHHHH
Q 004829 557 TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEK---KSALFGIALNQMGLACVQR-----Y-----TINEAADL 623 (728)
Q Consensus 557 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~ 623 (728)
.. .+..-| +..=-++=...+..++.+.....-+ ........+-..|..|.-. | -.+.|...
T Consensus 75 ~~-----~~i~~y-k~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~a 148 (236)
T PF00244_consen 75 QV-----KLIKDY-KKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEA 148 (236)
T ss_dssp HH-----HHHHHH-HHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHh
Confidence 10 111111 1111122344555556555443211 1111222222334444321 1 24789999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHHc
Q 004829 624 FEEARTILEKEYGPYHHDTLGVYSNLAGTY-DAMGRIDDAIEILEYVVGMREEKL 677 (728)
Q Consensus 624 ~~~al~~~~~~~~~~~~~~~~~~~~La~~~-~~~g~~~~A~~~~~~al~~~~~~~ 677 (728)
|++|+.+....+.+.+|.......+.+..| ..+|+.++|+...++++.-....+
T Consensus 149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l 203 (236)
T PF00244_consen 149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISEL 203 (236)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGG
T ss_pred hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Confidence 999999999989999999999888888776 458999999999999988665444
No 296
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.78 E-value=0.027 Score=35.54 Aligned_cols=31 Identities=23% Similarity=0.527 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004829 519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYG 549 (728)
Q Consensus 519 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 549 (728)
.++..+|.+|..+|++++|+.+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5789999999999999999999999999876
No 297
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.75 E-value=0.013 Score=60.49 Aligned_cols=109 Identities=15% Similarity=0.080 Sum_probs=89.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHH
Q 004829 521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALF 600 (728)
Q Consensus 521 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 600 (728)
+-.-+.-++..+.|+.|+..|.+|+++.+.. +..+.+.+.++.+.++|..|+..+.+|++. .+..
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnc-------a~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~ 71 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNC-------AIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY 71 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcc-------eeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence 4455667788899999999999999987765 445567788999999999999999999998 5667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004829 601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGT 652 (728)
Q Consensus 601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~ 652 (728)
..+|+..|.++...+.+.+|+..|+....+ .|+...+...+..|
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l--------~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKL--------APNDPDATRKIDEC 115 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhc--------CcCcHHHHHHHHHH
Confidence 889999999999999999999999998887 55555454444444
No 298
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=2.8 Score=42.70 Aligned_cols=141 Identities=17% Similarity=0.155 Sum_probs=96.4
Q ss_pred HHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 004829 277 CSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRY 356 (728)
Q Consensus 277 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 356 (728)
+...++.+|..+-+..+.-........-......+|+.+..+|...|+...-...+...+... .++.+....+.....
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavLiN~ 214 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVLINL 214 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHHHHH
Confidence 345677888777665554321111111112234568888999999999777666666555443 344455666777778
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 357 VAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSM 423 (728)
Q Consensus 357 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 423 (728)
|-..|...+.|+.|.....+.. +|... .....+..++.+|.+..-+++|..|.+++.+|+...
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~--~pe~~--snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSV--YPEAA--SNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhccc--Ccccc--ccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 8889999999999988777654 22222 223567788999999999999999999999988654
No 299
>PRK14707 hypothetical protein; Provisional
Probab=95.67 E-value=4.8 Score=49.74 Aligned_cols=379 Identities=8% Similarity=0.003 Sum_probs=201.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCc
Q 004829 312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGET--CRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPAS 389 (728)
Q Consensus 312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 389 (728)
-..++.++..+.++.++..+-..+..+...+.. ++..... -..++.++-..++|.+...+-.-++.+.........
T Consensus 834 AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~--e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~ 911 (2710)
T PRK14707 834 VQHVATVLNAMSKWPDNAVCAAAAGAMAERLAD--EPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPE 911 (2710)
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHhc--ChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHH
Confidence 356788888888888888887777777665422 3333322 234566677777777766666666666555543333
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004829 390 IEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASI--DCSIGDAYLSLARFDEAIFSYHKALTAFKSAK 467 (728)
Q Consensus 390 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 467 (728)
...+..-..++.++..+.++.++-..-.-+..+......++..... -..++.++-.+++|.+...+-.-+..+...+.
T Consensus 912 Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~ 991 (2710)
T PRK14707 912 LRKALSAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLV 991 (2710)
T ss_pred HHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHh
Confidence 3233334456666666666655444433344444444444443333 34567777788888877666666655555442
Q ss_pred CCCCHHH--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHH--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829 468 GENHPAV--ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEI--ASGLIDIAAIYQSMNELEQAVKLLNK 543 (728)
Q Consensus 468 ~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 543 (728)
. ++.. ...-..+++++..+.++.++-.+-.-+..+...+. ..+.. ...-..++.++....++.+.-.+-.-
T Consensus 992 ~--~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa---~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~A 1066 (2710)
T PRK14707 992 D--EPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS---NDPGLCKALSSQGLTTVLNALCKWPEMPVCLAA 1066 (2710)
T ss_pred c--cHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc---cCHhhhhhcchHHHHHHHHhhccCCCchhHHHH
Confidence 1 2222 22234567777777777665555555555554432 11211 11223455555555555443333333
Q ss_pred HHHHHhcCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Q 004829 544 ALKIYGKTPGQQS-TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAAD 622 (728)
Q Consensus 544 al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 622 (728)
+..+......... ..+..-..++.++...-+|.+.-.+-+-++.+...++.........-...++.++-...++...-.
T Consensus 1067 a~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~ 1146 (2710)
T PRK14707 1067 ASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQA 1146 (2710)
T ss_pred HHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchH
Confidence 3333332211110 011122356777777788888778888888888777655444333334444544444444433332
Q ss_pred HHHHHHHHHHHhcCCCChhH--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC
Q 004829 623 LFEEARTILEKEYGPYHHDT--LGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAG 699 (728)
Q Consensus 623 ~~~~al~~~~~~~~~~~~~~--~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g 699 (728)
+=.-+..+..++.. .+.. ...-..++..+....++.+.-.+-+-++.+....-...+|.-.-....|+.+.....
T Consensus 1147 cr~Aa~~LA~RL~~--d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac~~A~~~La~rlG~a~~P~r~F~m~~lAqiaNa~s 1223 (2710)
T PRK14707 1147 CESAIDVLAATLAN--APGLRNALSAQGVAIALNALSKCLARPVCRSAFVLLAERAGSAELPWRQFEMRGIAVVANAMS 1223 (2710)
T ss_pred HHHHHHHHHHHhcc--chhhhhhcCHHHHHHHHHHhhcCcCcHHHHHHHHHHHHhhcCCCCCchhcCHHHHHHHHHHHH
Confidence 22233333333322 2222 112245666677777777666666666666666555666655444444444444333
No 300
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.65 E-value=0.029 Score=35.40 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829 352 ETCRYVAEAHVQSLQFDEAEKICQMALDIHR 382 (728)
Q Consensus 352 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 382 (728)
.+|+.+|.+|...|++++|+.+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5789999999999999999999999999876
No 301
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.64 E-value=1.5 Score=44.41 Aligned_cols=158 Identities=16% Similarity=0.133 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHc----CChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 004829 476 SVFVRLADLYHKI----GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS----MNELEQAVKLLNKALKI 547 (728)
Q Consensus 476 ~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 547 (728)
.....++.+|..- .+..+|..+|..+... ......+.||.+|.. ..++.+|..+|+++...
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~-----------g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~ 142 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD-----------GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL 142 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc-----------ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc
Confidence 3445555555442 3466677777644332 134456667777765 34777777777777654
Q ss_pred HhcCCCCCCcHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc----CC
Q 004829 548 YGKTPGQQSTIAGIEAQMGVMYYMTG-------NYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR----YT 616 (728)
Q Consensus 548 ~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~ 616 (728)
- .... ......++.+|..-. +...|...|.++.... ...+...+|.+|..- .+
T Consensus 143 g-----~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----------~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 143 G-----NVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----------NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred C-----ChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----------CHHHHHHHHHHHHcCCCCCcC
Confidence 2 1111 223456666665531 2236777777776552 346788888777652 48
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---------------ChHHHHHHHHHHHH
Q 004829 617 INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG---------------RIDDAIEILEYVVG 671 (728)
Q Consensus 617 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g---------------~~~~A~~~~~~al~ 671 (728)
+.+|..+|.++.+. .. ....+.++ ++...| +...|..++..+..
T Consensus 207 ~~~A~~wy~~Aa~~--------g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~ 265 (292)
T COG0790 207 LKKAFRWYKKAAEQ--------GD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACE 265 (292)
T ss_pred HHHHHHHHHHHHHC--------CC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHH
Confidence 99999999999886 22 55778888 666655 55566666665554
No 302
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.57 E-value=1.5 Score=45.61 Aligned_cols=152 Identities=13% Similarity=0.121 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC------------CC--------CCcHHHHHHHHHHHHHHHH
Q 004829 471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN------------HG--------IPSEEIASGLIDIAAIYQS 530 (728)
Q Consensus 471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~--------~~~~~~~~~~~~la~~~~~ 530 (728)
+|....++..++.++..+|++..|.+++++|+-.++... .| ..+.....++......+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 888899999999999999999999999999987665321 11 1233455667777888899
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 004829 531 MNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLA 610 (728)
Q Consensus 531 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 610 (728)
.|-+..|+++.+-.+.+.+.. ++ ..++..+-....+.++|+--++.++......... .........+..+.+
T Consensus 116 RG~~rTAlE~~KlLlsLdp~~--DP---~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~aLA 187 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPDE--DP---LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSIALA 187 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCCC--Cc---chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHHHHH
Confidence 999999999999988886652 11 2344555666677888887777777654420000 000122456677788
Q ss_pred HHHcCCH---------------HHHHHHHHHHHHH
Q 004829 611 CVQRYTI---------------NEAADLFEEARTI 630 (728)
Q Consensus 611 ~~~~g~~---------------~~A~~~~~~al~~ 630 (728)
++..++- +.|...+.+|+..
T Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 188 YFRLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred HHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence 8888877 8999999999988
No 303
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.48 E-value=7.1 Score=45.73 Aligned_cols=351 Identities=13% Similarity=-0.006 Sum_probs=167.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcC-CchhHhH
Q 004829 230 REMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDG-QDHALAK 308 (728)
Q Consensus 230 ~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 308 (728)
..++.. +.|++|+..|++....++.. .+-..+.+.+|......-.-..--+.|.+|+..+....+ +..|..
T Consensus 483 ~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 554 (932)
T PRK13184 483 DAFLAE-KLYDQALIFYRRIRESFPGR------KEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLE- 554 (932)
T ss_pred HHHHhh-HHHHHHHHHHHHHhhcCCCc------ccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchH-
Confidence 444444 36777777777666554322 223456677777766542222222444444444433333 334444
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH----HHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 004829 309 FAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRY----VAEAHVQSLQFDEAEKICQMALDIHREN 384 (728)
Q Consensus 309 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----la~~~~~~g~~~~A~~~~~~al~~~~~~ 384 (728)
|+..|.+|..+|+|++-+++|.-|++.+.. +|......-. +-.+.+. +-..|....--++.+.|+.
T Consensus 555 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 555 ---YLGKALVYQRLGEYNEEIKSLLLALKRYSQ-----HPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEK 624 (932)
T ss_pred ---HHhHHHHHHHhhhHHHHHHHHHHHHHhcCC-----CCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCccc
Confidence 888999999999999999999999998754 6665543322 2222222 1223334444444444433
Q ss_pred CCCCcHH------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 004829 385 TSPASIE------------------------EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIG 440 (728)
Q Consensus 385 ~~~~~~~------------------------~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 440 (728)
....... ....-..+ .+.+..|..---.+.++++... .+. .++.+.-
T Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~ 695 (932)
T PRK13184 625 ISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMEL-FLSFWSGFTPFLPELFQRAWDL-------RDY-RALADIF 695 (932)
T ss_pred ccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHH-HHHHHhcCchhhHHHHHHHhhc-------ccH-HHHHHHH
Confidence 2211000 00000000 0111222222222333333221 222 5666666
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcH
Q 004829 441 DAYLSLARFDEAIFSYHKALTAFKSAKGEN-----HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSE 515 (728)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 515 (728)
.+...+|.++-+.+.....-+.+....-.. .+.....+..-..+......++++...+... ++.
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 764 (932)
T PRK13184 696 YVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT-----------DPT 764 (932)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC-----------CHH
Confidence 777888888877766665554444331111 1111111222122333444666666544321 111
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004829 516 EIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEK 595 (728)
Q Consensus 516 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 595 (728)
....++...+.-....++.+.-....+.... .... ....-........+|+...++++|-+++...- .-.-..
T Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 837 (932)
T PRK13184 765 LILYAFDLFAIQALLDEEGESIIQLLQLIYD-YVSE---EERHDHLLVYEIQAHLWNRDLKKAYKLLNRYP-LDLLLD-- 837 (932)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHh-ccCC---hhhhhhhhHHHHHHHHHhccHHHHHHHHHhCC-hhhhcc--
Confidence 2222333333333333443333332222221 1111 11112233445667777888888888884331 111111
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829 596 KSALFGIALNQMGLACVQRYTINEAADLFEEAR 628 (728)
Q Consensus 596 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 628 (728)
....++...|.-+...++-+.|..+|..+.
T Consensus 838 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 838 ---EYSEAFVLYGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred ---ccchHHHHHHHHHHhcCchhHHHHHHhhcc
Confidence 123455556666667778888888887766
No 304
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.48 E-value=0.94 Score=47.10 Aligned_cols=159 Identities=15% Similarity=-0.002 Sum_probs=113.9
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhc--------------------CCCChhHHHHHHHHH
Q 004829 214 AGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICAN--------------------GKPSLEQVMCLHVLA 273 (728)
Q Consensus 214 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~--------------------~~~~~~~~~~~~~la 273 (728)
....+|-....|+.++..+..+| +++.|.++.++|+-.++.... ...+.....+++...
T Consensus 32 ll~~~PyHidtLlqls~v~~~~g-d~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQG-DHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 44678999999999999999998 999999999999988774411 011234456677788
Q ss_pred HHHHHcCChhHHHHHHHHhhhhhhhhcCCc-hhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 004829 274 AIHCSLGQYNEAIPVLERSVEIPVLEDGQD-HALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGE 352 (728)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 352 (728)
..+.+.|-+..|.++.+-.+.+. +. +|.. +++.+-....+.++|+--+.+++.......+. .-.....
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLd-----p~~DP~g---~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn 179 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLD-----PDEDPLG---VLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPN 179 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcC-----CCCCcch---hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCcc
Confidence 88999999999999999998876 33 3332 35555555667788887777777655421100 0001223
Q ss_pred HHHHHHHHHHHhCCH---------------HHHHHHHHHHHHHHHHc
Q 004829 353 TCRYVAEAHVQSLQF---------------DEAEKICQMALDIHREN 384 (728)
Q Consensus 353 ~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~~~~ 384 (728)
..+.++.+++..++- +.|...+.+|+..+|..
T Consensus 180 ~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 180 FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 456677778888877 89999999999888754
No 305
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=3.7 Score=42.29 Aligned_cols=185 Identities=14% Similarity=0.007 Sum_probs=132.1
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004829 514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG 593 (728)
Q Consensus 514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 593 (728)
-....+..+..+.++....++..|...+.+..-..... ........++..++.++.+.+.--.+..+.-.++....+..
T Consensus 269 ~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~-~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ 347 (482)
T KOG4322|consen 269 YQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKG-CNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYS 347 (482)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhc
Confidence 44556777889999999999999999998876544332 23345566777788888888888888888877777665544
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH------HHcCChHHHHHHHH
Q 004829 594 EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTY------DAMGRIDDAIEILE 667 (728)
Q Consensus 594 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~------~~~g~~~~A~~~~~ 667 (728)
-+ ...+..-..++..+...|..++|+..+..++....-..+-+ +.+.+++-.++|+ ....+.+.+..+++
T Consensus 348 ld--yl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~--drara~fvfanC~lA~a~s~~~e~ld~~~~~L~ 423 (482)
T KOG4322|consen 348 LD--YLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLD--DRARAIFVFANCTLAFALSCANESLDGFPRYLD 423 (482)
T ss_pred cc--hhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchh--hcceeEEEEEeeeecchhhhhhhhHHhhHHHHH
Confidence 32 22355667788888999999999999999988765443322 1112222122221 24557788888888
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHH
Q 004829 668 YVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRK 705 (728)
Q Consensus 668 ~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~ 705 (728)
+|-..+.++ .-|....++.+-+|..|...|+.++-.
T Consensus 424 ~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn 459 (482)
T KOG4322|consen 424 LAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERN 459 (482)
T ss_pred HHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHH
Confidence 888887665 467788999999999999999987754
No 306
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.46 E-value=2.9 Score=41.08 Aligned_cols=188 Identities=13% Similarity=0.171 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCC---C-------hHHHHHHHHHHHHHHHhC--------------CH
Q 004829 312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGET---D-------HRVGETCRYVAEAHVQSL--------------QF 367 (728)
Q Consensus 312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-------~~~~~~~~~la~~~~~~g--------------~~ 367 (728)
.+.+..+|+..|+..+|+..|++=+..+.+..+.. . .....-+..+|++..... -|
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy 92 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYY 92 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHH
Confidence 56677899999999999999999988888776551 1 011122233444443322 12
Q ss_pred HHHHHHHHHHHHHHHHcCC-CC--c-----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC
Q 004829 368 DEAEKICQMALDIHRENTS-PA--S-----------------IEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANG 427 (728)
Q Consensus 368 ~~A~~~~~~al~~~~~~~~-~~--~-----------------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 427 (728)
..|-.+...-......... +. . +.....+................++.+.+|...+...+
T Consensus 93 ~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~~ 172 (247)
T PF11817_consen 93 QIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKYG 172 (247)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHhc
Confidence 3333333222222222210 00 0 00000011111111122344567888899998888888
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829 428 HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENA 501 (728)
Q Consensus 428 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 501 (728)
.......+...+|..|+..|++++|+.+|+.+...+++. +-......++..+..|+...|+.+..+.+.-+.
T Consensus 173 ~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 173 QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 888888888999999999999999999999998777654 234456677888999999999988877665443
No 307
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=4.5 Score=43.08 Aligned_cols=227 Identities=11% Similarity=-0.085 Sum_probs=139.0
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829 429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP 508 (728)
Q Consensus 429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 508 (728)
.|..+.....-+.++...|+.+.|+..+..+++. .. ..-....++.+|.++..+.+|..|..++....+..
T Consensus 263 ~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~--~~----kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des--- 333 (546)
T KOG3783|consen 263 YPKGALWLLMEARILSIKGNSEAAIDMESLSIPI--RM----KQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES--- 333 (546)
T ss_pred CCCCccHHHHHHHHHHHcccHHHHHHHHHhcccH--HH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh---
Confidence 3444556677788888899988999999888872 11 33456678899999999999999999998877762
Q ss_pred CCCCCcHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHhcCCCCCCc----------------------H
Q 004829 509 NHGIPSEEIASGLIDIAAIYQS--------MNELEQAVKLLNKALKIYGKTPGQQST----------------------I 558 (728)
Q Consensus 509 ~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~----------------------~ 558 (728)
....+..-+..|.++.. .|+-+.|..+++....+....+...+. +
T Consensus 334 -----dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~l 408 (546)
T KOG3783|consen 334 -----DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILL 408 (546)
T ss_pred -----hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccc
Confidence 22222222233344322 345566666666555554442111110 0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829 559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY 638 (728)
Q Consensus 559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 638 (728)
+.-+..++.+|..-... +..-..++........-.+......-+..+|.++..+|+...|..+|..+++-... ...+
T Consensus 409 a~P~~El~Y~Wngf~~~--s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~-~~~d 485 (546)
T KOG3783|consen 409 ASPYYELAYFWNGFSRM--SKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESK-RTED 485 (546)
T ss_pred cchHHHHHHHHhhcccC--ChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hccc
Confidence 10112222222111111 11111122222222212133445566778899999999999999999998865222 2223
Q ss_pred ChhHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHH
Q 004829 639 HHDTLGVYSNLAGTYDAMGR-IDDAIEILEYVVGM 672 (728)
Q Consensus 639 ~~~~~~~~~~La~~~~~~g~-~~~A~~~~~~al~~ 672 (728)
.--.+.+++.||.+|..+|. ..+|..++.+|.+.
T Consensus 486 ~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 486 LWAVPFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred cccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 33456699999999999999 99999999999874
No 308
>PRK14707 hypothetical protein; Provisional
Probab=95.41 E-value=4.5 Score=49.95 Aligned_cols=382 Identities=8% Similarity=0.020 Sum_probs=204.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcH
Q 004829 313 MQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGE--TCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASI 390 (728)
Q Consensus 313 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 390 (728)
..++.++..+.+|.+...+-..+..+...+.. ++.... --..++.++-...++.+...+-.-+..+..........
T Consensus 751 QevANaLNALSKWPd~~~C~~AA~aLA~rLa~--~~~Lr~aL~pQ~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~dp~L 828 (2710)
T PRK14707 751 QQVATALNALSKWPDNQACAAAANTLAERQLR--EPDVRDVLKPREMTNALNALSKWPDTPACAAAASALAARVADDPRL 828 (2710)
T ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHHhh--CcchhhhcCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHhcChhH
Confidence 34566666666666555555544444443321 222211 12334555555555555555544454444433322222
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004829 391 EEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASI--DCSIGDAYLSLARFDEAIFSYHKALTAFKSAKG 468 (728)
Q Consensus 391 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 468 (728)
..+..-..+++++....++..+..+-..+..+......++..... -..++.++-.+++|.+...+-.-++.+...+..
T Consensus 829 r~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~ 908 (2710)
T PRK14707 829 REAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAERLADEPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLAD 908 (2710)
T ss_pred HHhcCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhc
Confidence 122223456666666777766655555555555444444443333 245677777788888777777777777666632
Q ss_pred CCCHHHH--HHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829 469 ENHPAVA--SVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEI--ASGLIDIAAIYQSMNELEQAVKLLNKA 544 (728)
Q Consensus 469 ~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a 544 (728)
++... ..-..++.++..+.++.++-.+-.-+..+...+. ..+.. ...-..++.++...+++.+.-.+-.-+
T Consensus 909 --d~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa---~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA 983 (2710)
T PRK14707 909 --EPELRKALSAHRVATALNALSKWPDIPVCATAASALAERLS---DDPDLREALDASNLPQVLNALSKWPDVPAGGEVV 983 (2710)
T ss_pred --CHHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhc---cChhhhhhccHHHHHHHHhhhccCCCchHHHHHH
Confidence 33333 3334677777777777766555555544444432 11222 222234566666666665554444444
Q ss_pred HHHHhcCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 004829 545 LKIYGKTPGQQS-TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADL 623 (728)
Q Consensus 545 l~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 623 (728)
..+......... .....-..++.++..+.+|.++-.+-.-+..+...+........+.--..++.++-...+|.+.-.+
T Consensus 984 ~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~ep~L~~amdaQ~lan~LNALSKWPde~~C 1063 (2710)
T PRK14707 984 DALAERLVDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLSNDPGLCKALSSQGLTTVLNALCKWPEMPVC 1063 (2710)
T ss_pred HHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhccCHhhhhhcchHHHHHHHHhhccCCCchhH
Confidence 444333211110 0111123567778888888877666666666666653331111122233455666666666655444
Q ss_pred HHHHHHHHHHhcCCCChhHH--HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCh
Q 004829 624 FEEARTILEKEYGPYHHDTL--GVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRV 701 (728)
Q Consensus 624 ~~~al~~~~~~~~~~~~~~~--~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~ 701 (728)
-.-+..+...+.. ++... ..-..++.++..+-++.+.-.+-..++.+...+....++...--...++.++....+|
T Consensus 1064 r~Aa~aLA~rL~~--d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKW 1141 (2710)
T PRK14707 1064 LAAASALAERLSD--DLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKW 1141 (2710)
T ss_pred HHHHHHHHHHhhc--cHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcC
Confidence 4444444443322 22221 2234677788888888887777777888877776666666666666777777776666
Q ss_pred hH
Q 004829 702 RN 703 (728)
Q Consensus 702 ~~ 703 (728)
-.
T Consensus 1142 p~ 1143 (2710)
T PRK14707 1142 PG 1143 (2710)
T ss_pred CC
Confidence 54
No 309
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.40 E-value=4.9 Score=43.36 Aligned_cols=389 Identities=11% Similarity=-0.036 Sum_probs=208.9
Q ss_pred hhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829 263 LEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGC-MQLGDTYAMLGQIENSILCYTAGLEIQRQ 341 (728)
Q Consensus 263 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~ 341 (728)
|.....|...|..-.+.|..+.+...|++++.-. +-. ...| ..++.+-...|+.+.-...|++|+.....
T Consensus 76 Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai-----p~S----vdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~ 146 (577)
T KOG1258|consen 76 PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAI-----PLS----VDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL 146 (577)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-----hhH----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc
Confidence 6666778888999999999999999999998754 211 1122 22333334557777777778877776422
Q ss_pred HcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH------cCCHHHHHHH
Q 004829 342 VLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDS------KGDYEAALEH 415 (728)
Q Consensus 342 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~------~g~~~~A~~~ 415 (728)
+-.....|-..-..-..++++..-...|++.+++-..... .++..=.-+.. .-..+++...
T Consensus 147 -----dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~--------~~f~~f~~~l~~~~~~~l~~~d~~~~l 213 (577)
T KOG1258|consen 147 -----DFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLN--------RHFDRFKQLLNQNEEKILLSIDELIQL 213 (577)
T ss_pred -----chhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhH--------HHHHHHHHHHhcCChhhhcCHHHHHHH
Confidence 1222233444444446677788888888887765322210 01100000000 1111111111
Q ss_pred HHHHHHHHHhcCCChhHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHH
Q 004829 416 YVLASMSMAANGHELDVASIDC-SIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDS 494 (728)
Q Consensus 416 ~~~al~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 494 (728)
-...... ............+. .+-.+-...+.++++...+.+...+ .=.++...-...+.
T Consensus 214 ~~~~~~~-~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~------------------~~~~~~~s~~~~~k 274 (577)
T KOG1258|consen 214 RSDVAER-SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI------------------HEKVYQKSEEEEEK 274 (577)
T ss_pred hhhHHhh-hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH------------------HHHHHHhhHhHHHH
Confidence 1100000 00000000000000 0000000111122222222222222 11222233334444
Q ss_pred HHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCC
Q 004829 495 KSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGN 574 (728)
Q Consensus 495 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 574 (728)
+..++..+...-... ..........|......-...|+++...-.|++++--+... ...|...+......|+
T Consensus 275 r~~fE~~IkrpYfhv-kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y-------~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 275 RWGFEEGIKRPYFHV-KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY-------DEFWIKYARWMESSGD 346 (577)
T ss_pred HHhhhhhcccccccc-CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh-------HHHHHHHHHHHHHcCc
Confidence 555555444321111 12234455667777778888999999999999998655433 4566777777778899
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004829 575 YSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYD 654 (728)
Q Consensus 575 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~ 654 (728)
.+-|...+..+.++... .. ..+...-+......|++..|...|+....- -|....+-..-+....
T Consensus 347 ~~~~~~~~~~~~~i~~k----~~---~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------~pg~v~~~l~~~~~e~ 411 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVK----KT---PIIHLLEARFEESNGNFDDAKVILQRIESE--------YPGLVEVVLRKINWER 411 (577)
T ss_pred hhHHHHHHHhhhhhcCC----CC---cHHHHHHHHHHHhhccHHHHHHHHHHHHhh--------CCchhhhHHHHHhHHH
Confidence 99998888888877422 12 244555577778889999999999988776 4666666666777788
Q ss_pred HcCChHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHH-HhCChhHHHHHHHHHHHhhcccc
Q 004829 655 AMGRIDDAIEILEYVVGMREEKLGTANPD-VEDEKRRLAELLK-EAGRVRNRKSRSLVTFLDSNSQN 719 (728)
Q Consensus 655 ~~g~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~La~~~~-~~g~~~~A~~~~l~~ll~~~~~~ 719 (728)
++|+.+.+.. +...+... .-|..++. ....+...+.... -.++.+.|. ..+..+++..|.+
T Consensus 412 r~~~~~~~~~-~~~l~s~~--~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~-~~l~~~~~~~~~~ 474 (577)
T KOG1258|consen 412 RKGNLEDANY-KNELYSSI--YEGKENNGILEKLYVKFARLRYKIREDADLAR-IILLEANDILPDC 474 (577)
T ss_pred HhcchhhhhH-HHHHHHHh--cccccCcchhHHHHHHHHHHHHHHhcCHHHHH-HHHHHhhhcCCcc
Confidence 8899888885 22222211 11223333 3444555555444 445666666 7777777666553
No 310
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=4.2 Score=41.87 Aligned_cols=198 Identities=15% Similarity=0.119 Sum_probs=138.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 467 KGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALK 546 (728)
Q Consensus 467 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 546 (728)
.|.+-.......+..+.++....++..|...+.+..-...+ +........++..++.++.+-+..-.+..+.-.++.
T Consensus 265 ~g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k---~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~ 341 (482)
T KOG4322|consen 265 FGGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK---GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEF 341 (482)
T ss_pred hcchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHH
Confidence 33445556777888999999999999999999998776655 234556777888888888888877777777776666
Q ss_pred HHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHH-----HHHHHHHHHHHHHHcCCHHHHH
Q 004829 547 IYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSAL-----FGIALNQMGLACVQRYTINEAA 621 (728)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~ 621 (728)
...+. ..+...+..-..++..+...|-.++|+..+..++....-.+.-.... .+.++..-+..+ ...+.+.+.
T Consensus 342 ~~sey-~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~ 419 (482)
T KOG4322|consen 342 KRSEY-SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFP 419 (482)
T ss_pred HHHHh-ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhH
Confidence 65554 33334445556788899999999999999999998765544322110 011111111112 345678888
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH---HHHHHHHHHH
Q 004829 622 DLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDD---AIEILEYVVG 671 (728)
Q Consensus 622 ~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~---A~~~~~~al~ 671 (728)
+++++|-.++.+..- +....++.+.+|..|...|+.++ +...|+++..
T Consensus 420 ~~L~~A~~~f~kL~~--he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 420 RYLDLAQSIFYKLGC--HEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred HHHHHHHHHHHHccc--hHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 888888888877643 66788899999999999998754 4445555544
No 311
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.26 E-value=0.018 Score=56.73 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=82.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004829 400 GLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFV 479 (728)
Q Consensus 400 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 479 (728)
+.-.+..|.++.|+++|..++.+ .|..+..+...+.+++.+++...|+..|..++++ +++.+.-|-
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~l------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~yk 186 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIEL------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGYK 186 (377)
T ss_pred HHHHhcCcchhhhhccccccccc------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccccc
Confidence 34455678899999999998865 7888899999999999999999999999999999 889999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 480 RLADLYHKIGKLRDSKSYCENALKI 504 (728)
Q Consensus 480 ~la~~~~~~g~~~~A~~~~~~al~~ 504 (728)
..+.....+|++.+|..++..++++
T Consensus 187 frg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 187 FRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred hhhHHHHHhhchHHHHHHHHHHHhc
Confidence 9999999999999999999999887
No 312
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.13 E-value=0.011 Score=58.16 Aligned_cols=91 Identities=15% Similarity=0.110 Sum_probs=82.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004829 566 GVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGV 645 (728)
Q Consensus 566 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 645 (728)
+.-.+..|.+++|++.|..++.+ ++..+..+...+.+++.+++...|+.-|..++.+ +|+...-
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~ 184 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKG 184 (377)
T ss_pred HHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccc
Confidence 33445678899999999999987 5667889999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 646 YSNLAGTYDAMGRIDDAIEILEYVVGM 672 (728)
Q Consensus 646 ~~~La~~~~~~g~~~~A~~~~~~al~~ 672 (728)
|-..+.+...+|++++|...+..++++
T Consensus 185 ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 185 YKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 999999999999999999999999986
No 313
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=94.99 E-value=2 Score=45.81 Aligned_cols=177 Identities=16% Similarity=0.055 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHhc
Q 004829 395 DRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARF-------DEAIFSYHKALTAFKSAK 467 (728)
Q Consensus 395 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~ 467 (728)
....||..++..++|+.|...|+.+..-+.........+.++-..|.+.+..+.. +....+++.|+..+....
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 3678999999999999999999988776654444445566666677777766643 477778888888777731
Q ss_pred C---CCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--cCCCCCCCcHHHHHHHHHHHHHH--HHcCCHHHHHHH
Q 004829 468 G---ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIY--GKPNHGIPSEEIASGLIDIAAIY--QSMNELEQAVKL 540 (728)
Q Consensus 468 ~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~ 540 (728)
. .......++....+.++...|.+.+|...+-+..... .... .-..+..+-.+|.+| ....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~----~~~~alllE~~a~~~~~~~~~-------- 357 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLR----PFGSALLLEQAAYCYASLRSN-------- 357 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhh----hHhhHHHHHHHHHhhcccccC--------
Confidence 1 1123556677778888889999888877776665552 1110 111333444444444 1110
Q ss_pred HHHHHHHHhcCCC-C-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 541 LNKALKIYGKTPG-Q-QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT 591 (728)
Q Consensus 541 ~~~al~~~~~~~~-~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 591 (728)
...++ . ....+.-+..-|.-|...|+...|..+|.+|+.++..
T Consensus 358 --------~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 358 --------RPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred --------CCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 00000 0 0112223344578899999999999999999988753
No 314
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.97 E-value=0.044 Score=34.19 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829 686 DEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ 718 (728)
Q Consensus 686 ~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~ 718 (728)
++++.+|.++...|++++|+ ..++.+++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~-~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAI-EYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHH-HHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHH-HHHHHHHHHCcC
Confidence 46889999999999999999 999999999886
No 315
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=5 Score=40.99 Aligned_cols=142 Identities=15% Similarity=0.068 Sum_probs=103.7
Q ss_pred HHhCCHHHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 004829 362 VQSLQFDEAEKICQMALDIHRE-NTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIG 440 (728)
Q Consensus 362 ~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 440 (728)
+.+.++.+|..+-...+.-... +...-+.-.+.+|+.+..+|...|+...-...+...+.......+....+...+.+-
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LL 216 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLL 216 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHH
Confidence 3456777777776665543211 111122344667888999999999988777777776766666667777888888899
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829 441 DAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK 507 (728)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (728)
..|...+.|+.|.....++.-- .. ..+...++.++.+|.+..-+++|..|.+++-+|+....+
T Consensus 217 r~yL~n~lydqa~~lvsK~~~p--e~--~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 217 RNYLHNKLYDQADKLVSKSVYP--EA--ASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHhhhHHHHHHHHHhhcccCc--cc--cccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 9999999999998877665311 00 113467888999999999999999999999999988543
No 316
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=94.71 E-value=4.9 Score=39.73 Aligned_cols=221 Identities=14% Similarity=0.172 Sum_probs=114.2
Q ss_pred HhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHH
Q 004829 445 SLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDI 524 (728)
Q Consensus 445 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 524 (728)
.+++|++|++.+.... ..+.+.|++.-|.++..-.++.+.+... +........+
T Consensus 2 ~~kky~eAidLL~~Ga----------------------~~ll~~~Q~~sg~DL~~lliev~~~~~~----~~~~~~~~rl 55 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGA----------------------LILLKHGQYGSGADLALLLIEVYEKSED----PVDEESIARL 55 (260)
T ss_dssp HTT-HHHHHHHHHHHH----------------------HHHHHTT-HHHHHHHHHHHHHHHHHTT-------SHHHHHHH
T ss_pred ccccHHHHHHHHHHHH----------------------HHHHHCCCcchHHHHHHHHHHHHHHcCC----CCCHHHHHHH
Confidence 3566677766665543 3344555555555555555554444221 1112223445
Q ss_pred HHHHHHcCCHH-HHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHHh
Q 004829 525 AAIYQSMNELE-QAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSA-----------ISKFRTS 592 (728)
Q Consensus 525 a~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~ 592 (728)
+.++.....-+ +-..+..++++-. +..+........+..+|..|++.|++.+|..+|-.+ +......
T Consensus 56 ~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~ 134 (260)
T PF04190_consen 56 IELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK 134 (260)
T ss_dssp HHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 55555443322 3455666666666 443445566788889999999999999999887421 1111222
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh----------cCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004829 593 GEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKE----------YGPYHHDTLGVYSNLAGTYDAMGRIDDA 662 (728)
Q Consensus 593 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~~~~~~La~~~~~~g~~~~A 662 (728)
+.... ......+....|+..++...|...+....+.+... .....|. ......|-.++.+ + +
T Consensus 135 ~~~~e--~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~Pl-lnF~~lLl~t~e~-~----~ 206 (260)
T PF04190_consen 135 GYPSE--ADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPL-LNFLQLLLLTCER-D----N 206 (260)
T ss_dssp TSS----HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HH-HHHHHHHHHHHHH-T-----
T ss_pred cCCcc--hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCch-HHHHHHHHHHHhc-C----c
Confidence 33222 23333444466777899999999888877664332 0112232 2222223333332 3 3
Q ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCh
Q 004829 663 IEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRV 701 (728)
Q Consensus 663 ~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~ 701 (728)
...|....+.++..+. .+|.....+..+|.+|+.....
T Consensus 207 ~~~F~~L~~~Y~~~L~-rd~~~~~~L~~IG~~yFgi~~~ 244 (260)
T PF04190_consen 207 LPLFKKLCEKYKPSLK-RDPSFKEYLDKIGQLYFGIQPP 244 (260)
T ss_dssp HHHHHHHHHHTHH----HHHHTHHHHHHHHHHHH---S-
T ss_pred HHHHHHHHHHhCcccc-ccHHHHHHHHHHHHHHCCCCCC
Confidence 4566666666655443 3477888899999999986543
No 317
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.57 E-value=0.33 Score=36.98 Aligned_cols=69 Identities=17% Similarity=0.278 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhh
Q 004829 222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV 297 (728)
Q Consensus 222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 297 (728)
+....+.|..++... +.++|+..+.++++.. ...++...++-.+..+|...|+|.+.+.+..+-+.+..
T Consensus 6 ak~~ie~GlkLY~~~-~~~~Al~~W~~aL~k~------~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQN-ETQQALQKWRKALEKI------TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHHHHHHHhccc-hHHHHHHHHHHHHhhc------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667787888885 8999999999999863 23366778888899999999999999998877676654
No 318
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=94.42 E-value=7.3 Score=41.60 Aligned_cols=178 Identities=11% Similarity=0.036 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHH
Q 004829 352 ETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDY-------EAALEHYVLASMSMA 424 (728)
Q Consensus 352 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~~ 424 (728)
.....||..++..++|+-|...|+.+..-+.... .....+.++...|.+.+..+.. +....+++.|+..+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk--aw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK--AWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch--hHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 3567799999999999999999999887654332 3344455666667776666643 366677777776655
Q ss_pred hc-----CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHH--HHcCChHHH
Q 004829 425 AN-----GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPA---VASVFVRLADLY--HKIGKLRDS 494 (728)
Q Consensus 425 ~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~--~~~g~~~~A 494 (728)
.. ........+....+.++...|.+.+|...+-+.....-. .... .+..+-.+|.+| .......
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~----~~l~~~~~alllE~~a~~~~~~~~~~~~-- 360 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILE----SDLRPFGSALLLEQAAYCYASLRSNRPS-- 360 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHh----hhhhhHhhHHHHHHHHHhhcccccCCCC--
Confidence 52 222344556677778888889988888777666554210 0112 344445555555 1110000
Q ss_pred HHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829 495 KSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 495 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 551 (728)
..+......+.-+..-|.-|...|+...|+.+|..++.++...
T Consensus 361 --------------~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~ 403 (414)
T PF12739_consen 361 --------------PGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGK 403 (414)
T ss_pred --------------ccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence 0000012233344455778999999999999999999998754
No 319
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.31 E-value=0.48 Score=36.12 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 004829 312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP 387 (728)
Q Consensus 312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 387 (728)
...-|.-++...+.++|+..++++++.... .+....++-.+..+|...|+|.+++.+...-+++..+..++
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-----~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITD-----REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 445566667889999999999999988543 56777888899999999999999999988888887766543
No 320
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.21 E-value=0.086 Score=32.82 Aligned_cols=31 Identities=19% Similarity=0.481 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 520 GLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 520 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
+++.+|.++...|++++|+..|++.+..+|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 6789999999999999999999999987764
No 321
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.16 E-value=0.092 Score=55.29 Aligned_cols=96 Identities=22% Similarity=0.290 Sum_probs=77.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCch
Q 004829 225 LLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDH 304 (728)
Q Consensus 225 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 304 (728)
|...|..|...| +...|+.++..|+...+. +....+.+||.+....|-..+|-.++.+++.+. ...
T Consensus 610 ln~aglywr~~g-n~~~a~~cl~~a~~~~p~--------~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-----~se 675 (886)
T KOG4507|consen 610 LNEAGLYWRAVG-NSTFAIACLQRALNLAPL--------QQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-----SSE 675 (886)
T ss_pred eecccceeeecC-CcHHHHHHHHHHhccChh--------hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-----ccC
Confidence 444555555665 999999999999875322 223346789999999999999999999999886 344
Q ss_pred hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829 305 ALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEI 338 (728)
Q Consensus 305 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 338 (728)
|.. ++.+|..|..+.+.+.|++.|++|++.
T Consensus 676 pl~----~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 676 PLT----FLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred chH----HHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 443 889999999999999999999999998
No 322
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=94.09 E-value=6.1 Score=38.35 Aligned_cols=178 Identities=12% Similarity=0.057 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCCCCcH
Q 004829 312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHV-QSLQFDEAEKICQMALDIHRENTSPASI 390 (728)
Q Consensus 312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~ 390 (728)
+..+|.+....|+|++.+.+..+++.... .....-...++.+|- ..|....+...+..........+.....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~-------eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~ 76 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNP-------ELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQV 76 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCC-------CCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHH
Confidence 67789999999999999999999988721 112222333333332 1233333333333333222221110000
Q ss_pred HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHh-----cCCChhHHHHHHHHHHHHHHh-----C-----CHHHHHH
Q 004829 391 EEAADRRLMGLICDSKGD-YEAALEHYVLASMSMAA-----NGHELDVASIDCSIGDAYLSL-----A-----RFDEAIF 454 (728)
Q Consensus 391 ~~a~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~ 454 (728)
.+ +-..... -++-...+...+.+... ..+....+..+-..|..|... | -.+.|..
T Consensus 77 -------~~--i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 147 (236)
T PF00244_consen 77 -------KL--IKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALE 147 (236)
T ss_dssp -------HH--HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred -------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHH
Confidence 00 0000000 11112222333333221 112222233333345554332 1 2378999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 004829 455 SYHKALTAFKSAKGENHPAVASVFVRLADLYHK-IGKLRDSKSYCENALKIY 505 (728)
Q Consensus 455 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 505 (728)
.|++|++++...+++.+|.......+.+..|+. +|+.++|....+++++..
T Consensus 148 aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 148 AYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 999999999998888899988888888887755 899999999988887764
No 323
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.09 E-value=11 Score=41.08 Aligned_cols=105 Identities=16% Similarity=0.080 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCC
Q 004829 268 CLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETD 347 (728)
Q Consensus 268 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 347 (728)
.+.+-|.-.++..+|..++++|...+.... ..............++.||..+.+.+.|.+++++|-+. +
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~---~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~--------d 424 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDII---SDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV--------D 424 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhcc---chhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------c
Confidence 345567777888888888888888876542 11111223456788888888888888888888888777 6
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829 348 HRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRE 383 (728)
Q Consensus 348 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 383 (728)
|...-....+-.+....+.-++|+.+.........+
T Consensus 425 ~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 425 RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 666666667777777788888888888777765543
No 324
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.96 E-value=6.5 Score=40.37 Aligned_cols=147 Identities=10% Similarity=0.024 Sum_probs=98.3
Q ss_pred CChhHHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHH
Q 004829 428 HELDVASIDCSIGDAYLSLAR------------FDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSK 495 (728)
Q Consensus 428 ~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 495 (728)
.+|....+|..+....-..-. .+.-+.+|++||+. +|.....+..+-.+..+..+.++..
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 356666666666554433322 34556667777776 6666666666666667777888888
Q ss_pred HHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC-----------CcHHHHHHH
Q 004829 496 SYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQ-----------STIAGIEAQ 564 (728)
Q Consensus 496 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------~~~~~~~~~ 564 (728)
.-+++++.... ..+.....|...-...+..-.+......|.+++.......... ..+..++..
T Consensus 86 ~~we~~l~~~~------~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r 159 (321)
T PF08424_consen 86 KKWEELLFKNP------GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLR 159 (321)
T ss_pred HHHHHHHHHCC------CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence 88888888732 2344444444444444445568899999999988876543321 245566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 565 MGVMYYMTGNYSDSYNTLKSAISK 588 (728)
Q Consensus 565 la~~~~~~g~~~~A~~~~~~al~~ 588 (728)
+.......|..+.|+..++-.+++
T Consensus 160 ~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 160 LCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHCCchHHHHHHHHHHHHH
Confidence 888889999999999999998886
No 325
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.94 E-value=0.26 Score=39.54 Aligned_cols=43 Identities=26% Similarity=0.256 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 621 ADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG 671 (728)
Q Consensus 621 ~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 671 (728)
+..+++.+.. +|....+.+.+|..+...|++++|++.+-.++.
T Consensus 8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4456666666 888889999999999999999999999988766
No 326
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.90 E-value=0.82 Score=40.62 Aligned_cols=87 Identities=17% Similarity=0.069 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004829 600 FGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGT 679 (728)
Q Consensus 600 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 679 (728)
....+..+..+-...++.+++..++....-+ .|.....-..-|.++...|++.+|+.+|+.+.+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~-------- 72 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE-------- 72 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc--------
Confidence 3456666777777888999998888877666 888888888899999999999999999998765
Q ss_pred CChHHHHHHHHHHHHHHHhCChh
Q 004829 680 ANPDVEDEKRRLAELLKEAGRVR 702 (728)
Q Consensus 680 ~~p~~~~~~~~La~~~~~~g~~~ 702 (728)
..|....+.-.++.++..+|+.+
T Consensus 73 ~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 73 RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred cCCCChHHHHHHHHHHHHcCChH
Confidence 44666666666777887777643
No 327
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.73 E-value=0.74 Score=37.93 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=59.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC----CH-------HHHHHHHHHHHHHHHH
Q 004829 565 MGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY----TI-------NEAADLFEEARTILEK 633 (728)
Q Consensus 565 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~-------~~A~~~~~~al~~~~~ 633 (728)
++.-++..|++-+|+++.+..+..... ..+ ....+..-|.++..+. +. -.|++.|.++..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~---~~~--~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L--- 73 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE---DES--SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL--- 73 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC---CCc--hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc---
Confidence 466788999999999999998876322 111 1245556677666543 33 3456666666666
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004829 634 EYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANP 682 (728)
Q Consensus 634 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p 682 (728)
.|..+..++.||.-+.. ..+|++++...++.+.-..|
T Consensus 74 -----sp~~A~~L~~la~~l~s-------~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 74 -----SPDSAHSLFELASQLGS-------VKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred -----ChhHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHhcccCC
Confidence 67776666666665544 44555555544444333333
No 328
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.66 E-value=1.1 Score=37.04 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=63.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhC----CHH-------HHHHHHHHHHHHHHHhc
Q 004829 399 MGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLA----RFD-------EAIFSYHKALTAFKSAK 467 (728)
Q Consensus 399 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~-------~A~~~~~~al~~~~~~~ 467 (728)
.+.-++..|++-+|++..+..+... +........+..-|.++..+. +.+ .+++.|.++..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h---~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L----- 73 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH---GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL----- 73 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc---cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-----
Confidence 3567889999999999999876543 333333356666777776543 333 355555555555
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 468 GENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI 504 (728)
Q Consensus 468 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (728)
.|..+..++.+|.-+.....|+++..-.+++|.+
T Consensus 74 ---sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 74 ---SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ---ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 7777888888877766666667777666666654
No 329
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.65 E-value=6.6 Score=40.30 Aligned_cols=147 Identities=11% Similarity=0.055 Sum_probs=95.8
Q ss_pred CHHHHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 004829 471 HPAVASVFVRLADLYHKIGK------------LRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAV 538 (728)
Q Consensus 471 ~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 538 (728)
+|....++..+....-..-. .+.-+.+|++|++. +|.....+..+-.+.....+.++..
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~---------np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH---------NPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 77777777777766554432 34566788888887 2223344444445555666777777
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC----------cHHHHHHHHHHH
Q 004829 539 KLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK----------SALFGIALNQMG 608 (728)
Q Consensus 539 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la 608 (728)
..+++++...+.. ..+...|...-......-.+......|.+++..+....... ......++..+.
T Consensus 86 ~~we~~l~~~~~~----~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~ 161 (321)
T PF08424_consen 86 KKWEELLFKNPGS----PELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLC 161 (321)
T ss_pred HHHHHHHHHCCCC----hHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence 7788887764432 12222222222222334468899999999998877654432 233456777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH
Q 004829 609 LACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~al~~ 630 (728)
....+.|-.+.|+..++-.+++
T Consensus 162 ~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 162 RFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHCCchHHHHHHHHHHHHH
Confidence 8888999999999999999887
No 330
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.64 E-value=10 Score=39.41 Aligned_cols=212 Identities=9% Similarity=-0.007 Sum_probs=119.1
Q ss_pred CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
.+....+|+.....+...++-+.|+...++++... |. ....++.+|....+-+....+|+++.+....
T Consensus 298 ~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~s---------ps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r 365 (660)
T COG5107 298 FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMS---------PS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKR 365 (660)
T ss_pred hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCC---------Cc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHH
Confidence 55666777777777778888888888877776552 21 3455666666666666666666665543321
Q ss_pred CC---------CC---CCcHH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 004829 551 TP---------GQ---QSTIA-----------GIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQM 607 (728)
Q Consensus 551 ~~---------~~---~~~~~-----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 607 (728)
.. +. ..... .++..+-..-.+..-.+.|...|-++-+. +-..+ .++..-
T Consensus 366 ~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~----~~~~h----~vyi~~ 437 (660)
T COG5107 366 KYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE----GIVGH----HVYIYC 437 (660)
T ss_pred HHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc----CCCCc----ceeeeH
Confidence 10 00 00000 11111111122223344444444444332 21111 122222
Q ss_pred H-HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 004829 608 G-LACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVED 686 (728)
Q Consensus 608 a-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~ 686 (728)
| .-|...|++.-|...|+-.+.. +|+........-..+...++-+.|..+|+.++..... .....
T Consensus 438 A~~E~~~~~d~~ta~~ifelGl~~--------f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~------~q~k~ 503 (660)
T COG5107 438 AFIEYYATGDRATAYNIFELGLLK--------FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEK------TQLKR 503 (660)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH------hhhhH
Confidence 2 2345678999999999988887 5555444444455667889999999999998875532 23345
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHhhcc
Q 004829 687 EKRRLAELLKEAGRVRNRKSRSLVTFLDSNS 717 (728)
Q Consensus 687 ~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~ 717 (728)
.+..+-.--..-|+...+. ..-+.+.+..|
T Consensus 504 iy~kmi~YEs~~G~lN~v~-sLe~rf~e~~p 533 (660)
T COG5107 504 IYDKMIEYESMVGSLNNVY-SLEERFRELVP 533 (660)
T ss_pred HHHHHHHHHHhhcchHHHH-hHHHHHHHHcC
Confidence 5666666666777777766 44444444433
No 331
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.40 E-value=8.3 Score=37.58 Aligned_cols=134 Identities=11% Similarity=0.063 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHh
Q 004829 367 FDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSL 446 (728)
Q Consensus 367 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 446 (728)
-++-++-+.+.++-.+... .....+.++.++|..|.+.++.+.+.+++.+.+.-....+-..+.......+|.+|..+
T Consensus 91 neeki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~ 168 (412)
T COG5187 91 NEEKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDR 168 (412)
T ss_pred hHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccH
Confidence 3444555655555444443 23455778999999999999999999999988877766666677777777888888776
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829 447 ARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK 507 (728)
Q Consensus 447 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (728)
.-..+.++.....++. |++....-..-...|.......++.+|..++-..+..+..
T Consensus 169 ~vV~e~lE~~~~~iEk-----GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 169 KVVEESLEVADDIIEK-----GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHHHHHHHHHHHh-----CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 6666666555555543 3444444444445566677778899999998888877655
No 332
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=4 Score=39.67 Aligned_cols=134 Identities=15% Similarity=0.111 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Q 004829 409 YEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKI 488 (728)
Q Consensus 409 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 488 (728)
-++-++-+.+.++-.+..+.......++.++|..|.+.++.+.+.+++.+.+.-.-.. +-..+...+-..||.+|..+
T Consensus 91 neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st--g~KiDv~l~kiRlg~~y~d~ 168 (412)
T COG5187 91 NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST--GLKIDVFLCKIRLGLIYGDR 168 (412)
T ss_pred hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHhhccH
Confidence 3455556655555555444456678899999999999999999999998887764433 22445556666777777655
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 489 GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 489 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
.-..+.++.... +.++ |.+....-..-...|.......++.+|..++..++..+..
T Consensus 169 ~vV~e~lE~~~~---~iEk---GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 169 KVVEESLEVADD---IIEK---GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHHHHHHHH---HHHh---CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 444444444444 4333 3334433344444566667778888888888877765544
No 333
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.33 E-value=12 Score=39.13 Aligned_cols=142 Identities=12% Similarity=-0.008 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHH-HHHHHHHHHcCChhHHHHHHHHhhhhhhhhc
Q 004829 222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCL-HVLAAIHCSLGQYNEAIPVLERSVEIPVLED 300 (728)
Q Consensus 222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 300 (728)
--.++..|-.+-.++ ++.+|...|.+..+-.+.. +..-.-..+ ..+-.+|+ +.+ +...+..+...+...
T Consensus 6 ~~llc~Qgf~Lqkq~-~~~esEkifskI~~e~~~~----~f~lkeEvl~grilnAff-l~n----ld~Me~~l~~l~~~~ 75 (549)
T PF07079_consen 6 QYLLCFQGFILQKQK-KFQESEKIFSKIYDEKESS----PFLLKEEVLGGRILNAFF-LNN----LDLMEKQLMELRQQF 75 (549)
T ss_pred HHHHHHhhHHHHHHh-hhhHHHHHHHHHHHHhhcc----hHHHHHHHHhhHHHHHHH-Hhh----HHHHHHHHHHHHHhc
Confidence 345777888888886 9999999999887653221 111011122 22233333 233 333333333332222
Q ss_pred CCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHH-----------HHHHHHHHHHHHHhCCHHH
Q 004829 301 GQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRV-----------GETCRYVAEAHVQSLQFDE 369 (728)
Q Consensus 301 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-----------~~~~~~la~~~~~~g~~~~ 369 (728)
+ ..+ ...+-.|...++.+.|.+|++.+..--..... ..+.. ...-...|.++...|.|.+
T Consensus 76 ~-~s~----~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~----~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~E 146 (549)
T PF07079_consen 76 G-KSA----YLPLFKALVAYKQKEYRKALQALSVWKEQIKG----TESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSE 146 (549)
T ss_pred C-Cch----HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcc----cccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcch
Confidence 3 222 13566788889999999999876543332111 11111 1122346888999999999
Q ss_pred HHHHHHHHHHHHH
Q 004829 370 AEKICQMALDIHR 382 (728)
Q Consensus 370 A~~~~~~al~~~~ 382 (728)
+...+.+.+...-
T Consensus 147 gR~iLn~i~~~ll 159 (549)
T PF07079_consen 147 GRAILNRIIERLL 159 (549)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999886543
No 334
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.33 E-value=5.8 Score=35.60 Aligned_cols=150 Identities=15% Similarity=0.106 Sum_probs=96.7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHH
Q 004829 440 GDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIAS 519 (728)
Q Consensus 440 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 519 (728)
|.-|+..++-..+-..|..+|++. ..+..++|+..|...-+.-- + .. -..
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA-----------------------~~~k~d~Alaaf~~lektg~----g-~Y--pvL 95 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLA-----------------------QENKTDDALAAFTDLEKTGY----G-SY--PVL 95 (221)
T ss_pred eeehhcccccccchHHHHHHHHHH-----------------------HcCCchHHHHHHHHHHhcCC----C-cc--hHH
Confidence 445666777777777777777763 23556677776665443311 1 12 234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHH
Q 004829 520 GLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSAL 599 (728)
Q Consensus 520 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 599 (728)
+....+.+....|+...|+.+|.++-.-.+- .....-.....-+.++...|-|+.-. ...+.+.....+.
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~---P~~~rd~ARlraa~lLvD~gsy~dV~-------srvepLa~d~n~m 165 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSI---PQIGRDLARLRAAYLLVDNGSYDDVS-------SRVEPLAGDGNPM 165 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCC---cchhhHHHHHHHHHHHhccccHHHHH-------HHhhhccCCCChh
Confidence 5677888899999999999999876433211 11111122234466677777776543 3344444555666
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 600 FGIALNQMGLACVQRYTINEAADLFEEART 629 (728)
Q Consensus 600 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 629 (728)
...+...||..-++.|++..|...|.+...
T Consensus 166 R~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 166 RHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 677888999999999999999999998765
No 335
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.29 E-value=0.24 Score=32.10 Aligned_cols=36 Identities=28% Similarity=0.264 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004829 644 GVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGT 679 (728)
Q Consensus 644 ~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 679 (728)
.++..||.+-...++|++|+.-|++++++.++.+.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 468889999999999999999999999999887654
No 336
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.23 E-value=0.26 Score=31.91 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004829 602 IALNQMGLACVQRYTINEAADLFEEARTILEKEYG 636 (728)
Q Consensus 602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 636 (728)
.++..||.+-+..++|++|+.-|++++.+.++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 46788999999999999999999999999877643
No 337
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=93.08 E-value=9.1 Score=37.15 Aligned_cols=182 Identities=12% Similarity=0.076 Sum_probs=104.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHc-CCCCCCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004829 478 FVRLADLYHKIGKLRDSKSYCENALKIYG-KPNHGIPSEEIASGLIDIAAIYQ-SMNELEQAVKLLNKALKIYGKTPGQQ 555 (728)
Q Consensus 478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~ 555 (728)
+..+|.+....++|++...+.++++.... ... ...-.+.|..+|- ..|....+...+...-+ -....+..
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eL-------t~EERnLLSvayKn~i~~~R~s~R~i~sie~-ke~~~~~~ 75 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEEL-------TVEERNLLSVAYKNVIGARRASWRIISSIEQ-KEESRGNE 75 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccC-------CHHHHHHHHHHHhhhhcccHHHHHHHhHHHH-hhhccCch
Confidence 45678888899999999999999887632 111 1222334444443 24555666666554222 11111111
Q ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC---cHHHHHHHHHHHHHHHH-----cCC-----HHHHHH
Q 004829 556 STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK---SALFGIALNQMGLACVQ-----RYT-----INEAAD 622 (728)
Q Consensus 556 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~-----~g~-----~~~A~~ 622 (728)
... .+..-|. ..=-++-..++...+.+.....-+. +......+-..|..|.- .|+ .+.|..
T Consensus 76 ~~~-----~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~ 149 (244)
T smart00101 76 DHV-----ASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV 149 (244)
T ss_pred HHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 111 1111111 1112344556667777765542221 11112222223333332 222 568999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 004829 623 LFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA-MGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 623 ~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~-~g~~~~A~~~~~~al~~~ 673 (728)
.|++|+++....+.+.||-......+.+..|+. +++.++|..+.++++.-.
T Consensus 150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999998888889999988888888776654 799999998888777654
No 338
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.65 E-value=11 Score=37.15 Aligned_cols=230 Identities=11% Similarity=0.078 Sum_probs=104.2
Q ss_pred HhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 004829 321 MLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMG 400 (728)
Q Consensus 321 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg 400 (728)
.+++|++|++++..+... +.+.|++..|.++..-.++.+.....+.... ....+.
T Consensus 2 ~~kky~eAidLL~~Ga~~----------------------ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~---~~~rl~ 56 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALI----------------------LLKHGQYGSGADLALLLIEVYEKSEDPVDEE---SIARLI 56 (260)
T ss_dssp HTT-HHHHHHHHHHHHHH----------------------HHHTT-HHHHHHHHHHHHHHHHHTT---SHH---HHHHHH
T ss_pred ccccHHHHHHHHHHHHHH----------------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCHH---HHHHHH
Confidence 356677777666555433 4455555555555555555555443332221 123344
Q ss_pred HHHHHcCCHH-HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004829 401 LICDSKGDYE-AALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFV 479 (728)
Q Consensus 401 ~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 479 (728)
.+....+.-+ +-..+..+++...............+..+|..|+..|++.+|..+|-.+- .....++.
T Consensus 57 ~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-----------~~~~~~~~ 125 (260)
T PF04190_consen 57 ELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-----------DPSAFAYV 125 (260)
T ss_dssp HHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------------HHHHHHHH
T ss_pred HHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-----------ChhHHHHH
Confidence 4444333222 23444555555553444455667888899999999999888888775431 11122221
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----hcCC---
Q 004829 480 RLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY----GKTP--- 552 (728)
Q Consensus 480 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~--- 552 (728)
.+-......|...++- .........|...++...|...+..-.+.. +...
T Consensus 126 ~ll~~~~~~~~~~e~d-----------------------lfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~ 182 (260)
T PF04190_consen 126 MLLEEWSTKGYPSEAD-----------------------LFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSD 182 (260)
T ss_dssp HHHHHHHHHTSS--HH-----------------------HHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEE
T ss_pred HHHHHHHHhcCCcchh-----------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccc
Confidence 2222222233333221 112222334666788888888777666552 2110
Q ss_pred ---CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC
Q 004829 553 ---GQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY 615 (728)
Q Consensus 553 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 615 (728)
.....+......|-.+ +..+ +...|....+.++..-.. ++.....+..+|..|+...
T Consensus 183 ~~~~~~~PllnF~~lLl~t-~e~~----~~~~F~~L~~~Y~~~L~r-d~~~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 183 IEYPPSYPLLNFLQLLLLT-CERD----NLPLFKKLCEKYKPSLKR-DPSFKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp EEEESS-HHHHHHHHHHHH-HHHT-----HHHHHHHHHHTHH---H-HHHTHHHHHHHHHHHH---
T ss_pred cCCCCCCchHHHHHHHHHH-HhcC----cHHHHHHHHHHhCccccc-cHHHHHHHHHHHHHHCCCC
Confidence 0111111111112222 2333 235566655555443322 3445667778888887644
No 339
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=8.4 Score=38.28 Aligned_cols=129 Identities=14% Similarity=0.061 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHH
Q 004829 414 EHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRD 493 (728)
Q Consensus 414 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 493 (728)
+-+.+.++-...+........++.+.|..|.+.|+-+.|++.+.+..+-.-.. +..-+.......+|..|... +-
T Consensus 85 ~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy~D~---~l 159 (393)
T KOG0687|consen 85 KELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFYLDH---DL 159 (393)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhhccH---HH
Confidence 33444444444443455677889999999999999999999998876653332 23455666667777777554 33
Q ss_pred HHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 494 SKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 494 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
-.+..++|-.+.++ |.+....-..-..-|.......++.+|-.+|-.++..+..
T Consensus 160 V~~~iekak~liE~---GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 160 VTESIEKAKSLIEE---GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHHHHHHHHh---CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 33444455555544 3334433344444566667778888888888877765543
No 340
>PRK10941 hypothetical protein; Provisional
Probab=92.52 E-value=1.3 Score=43.80 Aligned_cols=82 Identities=13% Similarity=0.082 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004829 599 LFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLG 678 (728)
Q Consensus 599 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~ 678 (728)
.....+.++-.+|...++++.|+.+.+..+.+ .|+...-+...|.+|.++|.+..|..-++..++.+
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~----- 245 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC----- 245 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----
Confidence 35667888889999999999999999999998 77777778889999999999999999999999866
Q ss_pred CCChHHHHHHHHHHH
Q 004829 679 TANPDVEDEKRRLAE 693 (728)
Q Consensus 679 ~~~p~~~~~~~~La~ 693 (728)
|+.|........+..
T Consensus 246 P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 246 PEDPISEMIRAQIHS 260 (269)
T ss_pred CCchhHHHHHHHHHH
Confidence 555665555544443
No 341
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.43 E-value=23 Score=40.09 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829 514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKA 544 (728)
Q Consensus 514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 544 (728)
....-.+....|.-....|++++|+.+|.-|
T Consensus 410 ~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La 440 (613)
T PF04097_consen 410 EDFLREIIEQAAREAEERGRFEDAILLYHLA 440 (613)
T ss_dssp SHHHHHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4556666777777788888888888777643
No 342
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=92.38 E-value=13 Score=37.07 Aligned_cols=132 Identities=18% Similarity=0.118 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Q 004829 326 ENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDS 405 (728)
Q Consensus 326 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~ 405 (728)
++-++-+.+.++-..+.+| .....+++...|..|.+.|+-+.|.+.+.+..+-.-..+.. +...-....+|..|
T Consensus 81 eeki~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~k--iDVvf~~iRlglfy-- 154 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHK--IDVVFYKIRLGLFY-- 154 (393)
T ss_pred HHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc--hhhHHHHHHHHHhh--
Confidence 3445555555555555444 34678899999999999999999999999888765544432 22222333444444
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829 406 KGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFK 464 (728)
Q Consensus 406 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 464 (728)
++.+--.+..++|-.+++..++....-..-..-|.......+|.+|..+|-.++..+.
T Consensus 155 -~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 155 -LDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred -ccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 5566666677777777888887665555555666677777888888888877776544
No 343
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.25 E-value=3 Score=42.55 Aligned_cols=105 Identities=20% Similarity=0.227 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCc
Q 004829 310 AGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPAS 389 (728)
Q Consensus 310 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 389 (728)
.++..+|..|...|+++.|+.+|-++-..+.. .......+.++-.+-...|+|..-..+..++............
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q 225 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQ 225 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHH
Confidence 46889999999999999999999998887755 4677888888888999999999888888877654211000000
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829 390 IEEAADRRLMGLICDSKGDYEAALEHYVLA 419 (728)
Q Consensus 390 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 419 (728)
...+.+...-|.+....++|..|..+|-.+
T Consensus 226 ~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 226 EVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 000123444555666666888887777544
No 344
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.09 E-value=3.8 Score=38.00 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 004829 616 TINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELL 695 (728)
Q Consensus 616 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~ 695 (728)
.-++|...|.++- +...-+.++..+.||..|. ..+.++|+.++-+++++. .+++.-..+++..|+.++
T Consensus 121 ~d~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~----~~~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 121 GDQEALRRFLQLE-------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELS----NPDDNFNPEILKSLASIY 188 (203)
T ss_pred CcHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhc----CCCCCCCHHHHHHHHHHH
Confidence 3355665554432 2223345668888888777 668899999999999965 334355678899999999
Q ss_pred HHhCChhHHH
Q 004829 696 KEAGRVRNRK 705 (728)
Q Consensus 696 ~~~g~~~~A~ 705 (728)
..+|+++.|.
T Consensus 189 ~~~~~~e~AY 198 (203)
T PF11207_consen 189 QKLKNYEQAY 198 (203)
T ss_pred HHhcchhhhh
Confidence 9999999986
No 345
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.04 E-value=8.8 Score=34.50 Aligned_cols=149 Identities=11% Similarity=0.063 Sum_probs=99.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHH
Q 004829 482 ADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGI 561 (728)
Q Consensus 482 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 561 (728)
|.-|+..+.-..+-..|..+|++.. .+..++|+..|....+ ...+..+ ...
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA~------------------------~~k~d~Alaaf~~lek---tg~g~Yp--vLA 96 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLAQ------------------------ENKTDDALAAFTDLEK---TGYGSYP--VLA 96 (221)
T ss_pred eeehhcccccccchHHHHHHHHHHH------------------------cCCchHHHHHHHHHHh---cCCCcch--HHH
Confidence 3345566666666666666666643 3555677766664432 2223333 344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004829 562 EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSAL-FGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHH 640 (728)
Q Consensus 562 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 640 (728)
....+.+....|+...|+.+|.++-.-. ..+.. ...+...-+.++...|-|++-.. ..+.+.++.+|
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~dt-----~~P~~~rd~ARlraa~lLvD~gsy~dV~s-------rvepLa~d~n~ 164 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAADT-----SIPQIGRDLARLRAAYLLVDNGSYDDVSS-------RVEPLAGDGNP 164 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhccC-----CCcchhhHHHHHHHHHHHhccccHHHHHH-------HhhhccCCCCh
Confidence 5678999999999999999999875431 11111 12344555677778887766544 33344556688
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 641 DTLGVYSNLAGTYDAMGRIDDAIEILEYVVG 671 (728)
Q Consensus 641 ~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 671 (728)
-...+...||..-++.|++.+|..+|.+...
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8888889999999999999999999998876
No 346
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.94 E-value=5.3 Score=39.00 Aligned_cols=79 Identities=23% Similarity=0.172 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004829 602 IALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTAN 681 (728)
Q Consensus 602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 681 (728)
..+...+..|...|.+.+|+.+.++++.+ +|-....+..|-.++..+|+--.|...|++..+..+.-+|-+-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 45666788899999999999999999999 9999999999999999999999999999999998888888655
Q ss_pred hHHHHHH
Q 004829 682 PDVEDEK 688 (728)
Q Consensus 682 p~~~~~~ 688 (728)
.+...-+
T Consensus 352 ddsieew 358 (361)
T COG3947 352 DDSIEEW 358 (361)
T ss_pred chhHHHH
Confidence 5444433
No 347
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.75 E-value=15 Score=36.48 Aligned_cols=111 Identities=12% Similarity=-0.026 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 004829 349 RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGH 428 (728)
Q Consensus 349 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 428 (728)
....+...||.+|...++|..|-..+.-. .........+.-.....+..+|.+|...++..+|..+..++.-+.....+
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence 45667889999999999999887665422 11111111122234456778999999999999999999988665555444
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004829 429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKAL 460 (728)
Q Consensus 429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 460 (728)
+......-...|.++-..++|-+|...|.+..
T Consensus 180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555677777778777776666543
No 348
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=91.61 E-value=42 Score=41.42 Aligned_cols=155 Identities=17% Similarity=0.148 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCC------------------------
Q 004829 393 AADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLAR------------------------ 448 (728)
Q Consensus 393 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------------ 448 (728)
++....+|..+...|.+.+|+.+|..|+...+..+|....+.++-.++.+....+.
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~ 321 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSS 321 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCcc
Confidence 44567899999999999999999999999999999988888887777655432210
Q ss_pred --------------------------------HHHHHHHHHHHHHHHHHhcC---CCCH--HHHHHHHHHHHHHHHcC--
Q 004829 449 --------------------------------FDEAIFSYHKALTAFKSAKG---ENHP--AVASVFVRLADLYHKIG-- 489 (728)
Q Consensus 449 --------------------------------~~~A~~~~~~al~~~~~~~~---~~~~--~~~~~~~~la~~~~~~g-- 489 (728)
...-...+++++.+|.+... +..| -...+...++.++....
T Consensus 322 s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~ 401 (1185)
T PF08626_consen 322 SPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLS 401 (1185)
T ss_pred CcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcc
Confidence 12223355666666665531 1122 24466777777777777
Q ss_pred ------------------ChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 490 ------------------KLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 490 ------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
.-.++..++.+++.+.-.. -...+....+..+|.+|...|-..++.-+++.++...-.
T Consensus 402 ~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~---l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~~ 477 (1185)
T PF08626_consen 402 DNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD---LSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLVP 477 (1185)
T ss_pred cchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh---CCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcc
Confidence 6778888888888764331 246677899999999999999998888888887766543
No 349
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.08 E-value=4.2 Score=40.12 Aligned_cols=79 Identities=19% Similarity=0.150 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004829 600 FGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGT 679 (728)
Q Consensus 600 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 679 (728)
...++..++..+...|+++.++..+++.+.. +|..-..|..+-..|...|+...|+..|++.-....+-+|.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi 223 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI 223 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence 4578889999999999999999999999998 99989999999999999999999999999999987777775
Q ss_pred CChHHHH
Q 004829 680 ANPDVED 686 (728)
Q Consensus 680 ~~p~~~~ 686 (728)
..+....
T Consensus 224 ~P~~~~~ 230 (280)
T COG3629 224 DPAPELR 230 (280)
T ss_pred CccHHHH
Confidence 5444433
No 350
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=90.97 E-value=2.4 Score=44.21 Aligned_cols=73 Identities=23% Similarity=0.342 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829 268 CLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQ 341 (728)
Q Consensus 268 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 341 (728)
++..|.++++-+|+|..|++.++. +++.....-...+...+.+++.+|-+|..+++|.+|+..|...+-...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888999999999998876 3333222222333445667999999999999999999999998877544
No 351
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.96 E-value=5.5 Score=36.98 Aligned_cols=81 Identities=19% Similarity=0.107 Sum_probs=57.4
Q ss_pred HcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 004829 278 SLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYV 357 (728)
Q Consensus 278 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 357 (728)
..-.-++|...|-++-.-. ....+...+.||..|. ..+.++|+.++.+++++.. +++.-..+.+..|
T Consensus 118 sr~~d~~A~~~fL~~E~~~--------~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sL 184 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEGTP--------ELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSL 184 (203)
T ss_pred hccCcHHHHHHHHHHcCCC--------CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHH
Confidence 3333466777666544221 1123445788888776 6789999999999999953 3335567889999
Q ss_pred HHHHHHhCCHHHHH
Q 004829 358 AEAHVQSLQFDEAE 371 (728)
Q Consensus 358 a~~~~~~g~~~~A~ 371 (728)
+.+|..+|+++.|-
T Consensus 185 as~~~~~~~~e~AY 198 (203)
T PF11207_consen 185 ASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHhcchhhhh
Confidence 99999999999874
No 352
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.85 E-value=1.4 Score=31.03 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004829 602 IALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYS 647 (728)
Q Consensus 602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 647 (728)
..++.+|..+.+.|+|++|..+.+.++++ .|+...+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~ 39 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHH
Confidence 36788999999999999999999999999 776655543
No 353
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.77 E-value=1.3 Score=31.24 Aligned_cols=37 Identities=22% Similarity=0.068 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Q 004829 311 GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCR 355 (728)
Q Consensus 311 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 355 (728)
+++.+|..++.+|+|++|..+.+.+|++ +|....+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHH
Confidence 4789999999999999999999999999 666655443
No 354
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.52 E-value=2.6 Score=37.52 Aligned_cols=87 Identities=10% Similarity=-0.033 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCC
Q 004829 431 DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH 510 (728)
Q Consensus 431 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 510 (728)
.....+..+..+-...++.+++...+.-..-+ .|.....-..-|.++...|++.+|+.+++.+..-
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~------ 73 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER------ 73 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc------
Confidence 34455666666777777888877777665555 7777777777888888888888888888875443
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCH
Q 004829 511 GIPSEEIASGLIDIAAIYQSMNEL 534 (728)
Q Consensus 511 ~~~~~~~~~~~~~la~~~~~~g~~ 534 (728)
.+....+--.++.++..+|+.
T Consensus 74 ---~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 74 ---APGFPYAKALLALCLYALGDP 94 (160)
T ss_pred ---CCCChHHHHHHHHHHHHcCCh
Confidence 222334445566677766664
No 355
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.21 E-value=26 Score=36.60 Aligned_cols=233 Identities=11% Similarity=0.088 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcC
Q 004829 265 QVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLG 344 (728)
Q Consensus 265 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 344 (728)
....|+.....+...++-+.|+...++++... |. ..+.++.+|....+-+.-..+|+++.+...+.+.
T Consensus 301 ~~evw~dys~Y~~~isd~q~al~tv~rg~~~s--------ps----L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys 368 (660)
T COG5107 301 AEEVWFDYSEYLIGISDKQKALKTVERGIEMS--------PS----LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYS 368 (660)
T ss_pred hHHHHHHHHHHHhhccHHHHHHHHHHhcccCC--------Cc----hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHh
Confidence 35556666777778889999999999888653 21 2678889998888888888888888765433211
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829 345 ETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMA 424 (728)
Q Consensus 345 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 424 (728)
....... -...|+++...+++-+-.. + ..-++..+-..-.+..-.+.|...|-++-..-
T Consensus 369 ~~~s~~~---------s~~D~N~e~~~Ell~kr~~---k--------~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~- 427 (660)
T COG5107 369 MGESESA---------SKVDNNFEYSKELLLKRIN---K--------LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEG- 427 (660)
T ss_pred hhhhhhh---------ccccCCccccHHHHHHHHh---h--------hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccC-
Confidence 1000000 0002333222222211111 0 01122222233333444556666666553221
Q ss_pred hcCCChhHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 425 ANGHELDVASIDCSIG-DAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALK 503 (728)
Q Consensus 425 ~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (728)
..+.+ +|..-| .-|...|++.-|...|+-.+.. .++........-..+...++-..|..+|++++.
T Consensus 428 ~~~h~-----vyi~~A~~E~~~~~d~~ta~~ifelGl~~--------f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 428 IVGHH-----VYIYCAFIEYYATGDRATAYNIFELGLLK--------FPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred CCCcc-----eeeeHHHHHHHhcCCcchHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 00111 111111 2356678888888888877776 444433334444556778888899999998887
Q ss_pred HHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 504 IYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
..++. ....+|..+...-..-|+...+..+=++....+++
T Consensus 495 r~~~~-------q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 495 RLEKT-------QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHh-------hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 75441 24455666666666667777766666655555443
No 356
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.98 E-value=23 Score=38.18 Aligned_cols=175 Identities=13% Similarity=0.067 Sum_probs=101.9
Q ss_pred cCChhHHHHHHHHhhhhhhhhc----CCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCC--------
Q 004829 279 LGQYNEAIPVLERSVEIPVLED----GQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGET-------- 346 (728)
Q Consensus 279 ~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------- 346 (728)
...|++|...|.-+........ -..+ +.-+..++.++.++..+|+.+-|..+.+++|=.....+.+.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ss-PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISS-PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccC-CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 4557888888887776542100 0111 22355699999999999999999999999987776654221
Q ss_pred -----ChH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829 347 -----DHR---VGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVL 418 (728)
Q Consensus 347 -----~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 418 (728)
.|. ...+++..-..+.+.|-+..|.++++-.+.+.+...... +.+.+-....+..+|+=-+..++.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~------~l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLG------ILYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchh------HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 122 223334444556678999999999999888776532111 222233333344444444444433
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHH
Q 004829 419 ASMSMAANGHELDVASIDCSIGDAYLSLAR---FDEAIFSYHKALTA 462 (728)
Q Consensus 419 al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~ 462 (728)
. +........|..... ..+|..|..... -..|...+.+|+.+
T Consensus 404 ~-e~~n~l~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 404 P-ENMNKLSQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred H-HhhccHhhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 2 111111222332222 244555555554 56788888888887
No 357
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=89.97 E-value=8.4 Score=47.31 Aligned_cols=154 Identities=16% Similarity=0.150 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcC----C------------------
Q 004829 517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTG----N------------------ 574 (728)
Q Consensus 517 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g----~------------------ 574 (728)
..+....+|.+|...|.+.+|+..|.+|+.+.+.. ++..+.+.++-.++.+....+ +
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~-~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~ 319 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS-NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS 319 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc-CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence 45667779999999999999999999999998876 666666666655554432111 0
Q ss_pred ----------------------------------HHHHHHHHHHHHHHHHHhC----C-CCcHHHHHHHHHHHHHHHHcC
Q 004829 575 ----------------------------------YSDSYNTLKSAISKFRTSG----E-KKSALFGIALNQMGLACVQRY 615 (728)
Q Consensus 575 ----------------------------------~~~A~~~~~~al~~~~~~~----~-~~~~~~~~~~~~la~~~~~~g 615 (728)
...-...+++++..+.... + ........+...++.++....
T Consensus 320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~ 399 (1185)
T PF08626_consen 320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQH 399 (1185)
T ss_pred ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhh
Confidence 1112234555555555442 1 112345667777788777777
Q ss_pred --------------------CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 616 --------------------TINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 616 --------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
...++..++.+++.+.-... ...+....+..+|.+|...|-..++.-+++.++...
T Consensus 400 ~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 400 LSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred cccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 77888888888887643322 244667899999999999999988888887776655
No 358
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=89.95 E-value=0.38 Score=28.99 Aligned_cols=31 Identities=19% Similarity=0.437 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004829 519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYG 549 (728)
Q Consensus 519 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 549 (728)
.++..+|.++...+++++|...+++++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4578899999999999999999999987643
No 359
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.71 E-value=4.4 Score=41.45 Aligned_cols=113 Identities=18% Similarity=0.124 Sum_probs=77.2
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc
Q 004829 427 GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYG 506 (728)
Q Consensus 427 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 506 (728)
......-.++..+|..|...|+++.|++.|-++.+.+.. .......+.++-.+-..+|+|..-..+..+|.....
T Consensus 144 ~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~ 218 (466)
T KOG0686|consen 144 LIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPD 218 (466)
T ss_pred hhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCch
Confidence 334455667889999999999999999999998777654 455677888888888899999888888887766521
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829 507 KPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKAL 545 (728)
Q Consensus 507 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 545 (728)
... .......+.+...-|.+.+.+++|..|..+|-.+.
T Consensus 219 ~~~-~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 219 ANE-NLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hhh-hHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 000 00011112233444555556668888888876543
No 360
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.49 E-value=3.8 Score=35.88 Aligned_cols=83 Identities=17% Similarity=0.117 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004829 603 ALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANP 682 (728)
Q Consensus 603 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p 682 (728)
.+..+..+-...++++++..++....-+ .|....+-..-|.++...|++.+|+..|+...+ .-+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~--------~~~ 75 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLS--------SAG 75 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhc--------cCC
Confidence 3444445555588899988888766666 778887888889999999999999999998776 222
Q ss_pred HHHHHHHHHHHHHHHhCCh
Q 004829 683 DVEDEKRRLAELLKEAGRV 701 (728)
Q Consensus 683 ~~~~~~~~La~~~~~~g~~ 701 (728)
...-..-.++.++..+|+.
T Consensus 76 ~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 76 APPYGKALLALCLNAKGDA 94 (153)
T ss_pred CchHHHHHHHHHHHhcCCh
Confidence 3334444556666666653
No 361
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=89.36 E-value=0.46 Score=28.60 Aligned_cols=29 Identities=28% Similarity=0.348 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 602 IALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
.++..+|.++...+++++|+..|++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 36788999999999999999999999876
No 362
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.31 E-value=5.1 Score=41.13 Aligned_cols=65 Identities=17% Similarity=0.289 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829 435 IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK 507 (728)
Q Consensus 435 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (728)
+-..|..||+.+++.+.|+.+..+.+.+ +|....-+...|.++..+.+|.+|..-+--+.-++--
T Consensus 230 Ietklv~CYL~~rkpdlALnh~hrsI~l--------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl 294 (569)
T PF15015_consen 230 IETKLVTCYLRMRKPDLALNHSHRSINL--------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWL 294 (569)
T ss_pred HHHHHHHhhhhcCCCchHHHHHhhhhhc--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999999999998 8888888999999999999999998887777666543
No 363
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.25 E-value=2.1 Score=36.60 Aligned_cols=72 Identities=19% Similarity=0.130 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcc
Q 004829 642 TLGVYSNLAGTYDAMGRI---DDAIEILEYVVGMREEKLGTANPD-VEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNS 717 (728)
Q Consensus 642 ~~~~~~~La~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~ 717 (728)
.....+++|+++....+. .+.+.+++..+. ..||+ ..+..+.||.-+.+.|+|+.++ ++++.+++..|
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-------~~~~~~rRe~lyYLAvg~yRlkeY~~s~-~yvd~ll~~e~ 102 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-------SAHPERRRECLYYLAVGHYRLKEYSKSL-RYVDALLETEP 102 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-------hcCcccchhhhhhhHHHHHHHhhHHHHH-HHHHHHHhhCC
Confidence 355778999999876654 445555555543 24454 4778899999999999999999 99999999998
Q ss_pred cccc
Q 004829 718 QNLK 721 (728)
Q Consensus 718 ~~~~ 721 (728)
++-.
T Consensus 103 ~n~Q 106 (149)
T KOG3364|consen 103 NNRQ 106 (149)
T ss_pred CcHH
Confidence 7643
No 364
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.08 E-value=20 Score=40.43 Aligned_cols=49 Identities=6% Similarity=0.091 Sum_probs=35.6
Q ss_pred HHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 498 CENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY 548 (728)
Q Consensus 498 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 548 (728)
|.-|+.+++.. +.+......++...|..++..|++++|...|-+++...
T Consensus 350 y~~Ai~LAk~~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 350 YKVAINLAKSQ--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 33344444432 23455678888899999999999999999999887543
No 365
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.98 E-value=16 Score=39.27 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829 520 GLIDIAAIYQSMNELEQAVKLLNKA 544 (728)
Q Consensus 520 ~~~~la~~~~~~g~~~~A~~~~~~a 544 (728)
.|..||.....+|+++-|..+|+++
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 5666666666666666666666654
No 366
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=88.88 E-value=11 Score=34.12 Aligned_cols=148 Identities=14% Similarity=0.137 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHh-
Q 004829 373 ICQMALDIHRENTSPASIEEAADRRLMGLICD-----SKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSL- 446 (728)
Q Consensus 373 ~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~- 446 (728)
.|+.|..++..+-+.... +...+.+|..++ ..+++..|++.+..+.. .....+..++|.++..-
T Consensus 50 nF~~A~kv~K~nCden~y--~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--------~n~~~aC~~~gLl~~~g~ 119 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDENSY--PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--------ANIPQACRYLGLLHWNGE 119 (248)
T ss_pred HHHHHHHHHHhcccccCC--cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--------cCCHHHHhhhhhhhccCc
Confidence 345555555444433221 233555665444 34578889999887763 33455667777776542
Q ss_pred ----C--CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH------------------------HHcCChHHHHH
Q 004829 447 ----A--RFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLY------------------------HKIGKLRDSKS 496 (728)
Q Consensus 447 ----g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~------------------------~~~g~~~~A~~ 496 (728)
+ +..+|++++.++-++ ....+.+.|...| ....+.+.|.+
T Consensus 120 ~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~q 189 (248)
T KOG4014|consen 120 KDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQ 189 (248)
T ss_pred CCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHH
Confidence 2 367888888887664 1122333333333 33355667777
Q ss_pred HHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcC
Q 004829 497 YCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS----MNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 497 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~ 551 (728)
+.-+|.++. ...+..++.+.|.. -.+.++|..+-.+|.++....
T Consensus 190 fa~kACel~-----------~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~ 237 (248)
T KOG4014|consen 190 FAIKACELD-----------IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL 237 (248)
T ss_pred HHHHHHhcC-----------ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 776666651 34556666666653 235788888888888887654
No 367
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.82 E-value=3.5 Score=31.43 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004829 221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVL 272 (728)
Q Consensus 221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l 272 (728)
.+..+...|..+-..| ++++|+.+|+.++..+.+.....|+......+...
T Consensus 5 ~A~~~a~~AVe~D~~g-r~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~k 55 (75)
T cd02682 5 MARKYAINAVKAEKEG-NAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQM 55 (75)
T ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 4566788888888997 99999999999999998887666665444434333
No 368
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=88.51 E-value=12 Score=31.34 Aligned_cols=75 Identities=11% Similarity=0.049 Sum_probs=58.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh-------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004829 604 LNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHD-------TLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK 676 (728)
Q Consensus 604 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~ 676 (728)
+..+|...++.+++-.++-.|++|+.+.++.......+ .+....+||..|..+|+.+-.++|++-|-+....+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 45678888899999999999999999988874221111 13356799999999999999999999887766555
Q ss_pred cC
Q 004829 677 LG 678 (728)
Q Consensus 677 ~~ 678 (728)
..
T Consensus 84 iP 85 (140)
T PF10952_consen 84 IP 85 (140)
T ss_pred cc
Confidence 44
No 369
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.45 E-value=3.3 Score=41.62 Aligned_cols=66 Identities=11% Similarity=0.085 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004829 309 FAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKIC 374 (728)
Q Consensus 309 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 374 (728)
+.-+...|+-.+.+++++.|...|..|..+...++|..+.....+++..|..++..+++....-..
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445788899999999999999999999999999999999999999999999999998887665433
No 370
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.12 E-value=8 Score=41.48 Aligned_cols=159 Identities=15% Similarity=0.073 Sum_probs=85.1
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHH
Q 004829 231 EMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFA 310 (728)
Q Consensus 231 ~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 310 (728)
....++ ++++++...... .+++.+ | ..-...++..+.+.|-++.|+.+.+. +..
T Consensus 270 ~av~~~-d~~~v~~~i~~~-~ll~~i------~--~~~~~~i~~fL~~~G~~e~AL~~~~D-------------~~~--- 323 (443)
T PF04053_consen 270 TAVLRG-DFEEVLRMIAAS-NLLPNI------P--KDQGQSIARFLEKKGYPELALQFVTD-------------PDH--- 323 (443)
T ss_dssp HHHHTT--HHH-----HHH-HTGGG----------HHHHHHHHHHHHHTT-HHHHHHHSS--------------HHH---
T ss_pred HHHHcC-Chhhhhhhhhhh-hhcccC------C--hhHHHHHHHHHHHCCCHHHHHhhcCC-------------hHH---
Confidence 344554 788877666311 111111 1 11245567777888888888765432 111
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcH
Q 004829 311 GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASI 390 (728)
Q Consensus 311 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 390 (728)
.+ .+....|+++.|.+...+ ......|..||.....+|+++-|+.+|+++-+
T Consensus 324 -rF---eLAl~lg~L~~A~~~a~~-------------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------- 375 (443)
T PF04053_consen 324 -RF---ELALQLGNLDIALEIAKE-------------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD----------- 375 (443)
T ss_dssp -HH---HHHHHCT-HHHHHHHCCC-------------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------------
T ss_pred -Hh---HHHHhcCCHHHHHHHHHh-------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----------
Confidence 22 333467888887765542 23445899999999999999999999988754
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829 391 EEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKA 459 (728)
Q Consensus 391 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 459 (728)
+..|..+|...|+.+.-.+....+. ..++ +...-.+++.+|+.++.++.+.++
T Consensus 376 -----~~~L~lLy~~~g~~~~L~kl~~~a~----~~~~-------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 376 -----FSGLLLLYSSTGDREKLSKLAKIAE----ERGD-------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -----HHHHHHHHHHCT-HHHHHHHHHHHH----HTT--------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -----ccccHHHHHHhCCHHHHHHHHHHHH----HccC-------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3456667777888655444433332 1111 111223455667777777666554
No 371
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.94 E-value=25 Score=36.47 Aligned_cols=119 Identities=15% Similarity=0.013 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHHHHHcCC---hhHHHHHHHHhhhhh
Q 004829 222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGK--PSLEQVMCLHVLAAIHCSLGQ---YNEAIPVLERSVEIP 296 (728)
Q Consensus 222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~ 296 (728)
+--++..|+.++.. +.|.+|+.++-.|-+.|-.+...- .-...+..-..+-+||+.+.+ ..+|..-+.++-+-+
T Consensus 163 glg~hekaRa~m~r-e~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 163 GLGLHEKARAAMER-EMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHhHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 44578889999999 599999999988887775542100 001123333445777877766 345555444444333
Q ss_pred hhhc-----------CCchhHh--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829 297 VLED-----------GQDHALA--KFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQ 341 (728)
Q Consensus 297 ~~~~-----------~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 341 (728)
.... +...|.. ....++.-|.+.+++|+-++|.++++.+......
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~e 299 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLE 299 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 2222 2222221 2334556677777778888887777777665544
No 372
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=87.92 E-value=54 Score=37.22 Aligned_cols=406 Identities=11% Similarity=0.011 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHH--HHH-HHhCCHHHHHHHHHHHHHHHHHH
Q 004829 266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLG--DTY-AMLGQIENSILCYTAGLEIQRQV 342 (728)
Q Consensus 266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la--~~~-~~~g~~~~A~~~~~~al~~~~~~ 342 (728)
..++..|-.++...|++++-...-.++.++. +..+.. |.... .++ ...+.-.++...|++++.-+..+
T Consensus 113 ~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-----pl~~~l----Wl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v 183 (881)
T KOG0128|consen 113 YAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-----PLPPHL----WLEWLKDELSMTQSEERKEVEELFEKALGDYNSV 183 (881)
T ss_pred hHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-----CCChHH----HHHHHHHHHhhccCcchhHHHHHHHHHhcccccc
Confidence 4445566777788888877665555555554 333322 22221 222 22367778888888887653211
Q ss_pred cCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 343 LGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMS 422 (728)
Q Consensus 343 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 422 (728)
......+......+..+...++++.-...|.+++........ .....+.++..+-..|...-..++-+.++...+..
T Consensus 184 --~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~ 260 (881)
T KOG0128|consen 184 --PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ 260 (881)
T ss_pred --hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 001122223333344456667888999999999876544433 22233444555555666555556666666655433
Q ss_pred HHhcCCChhHHHHHHHHH--H-HHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004829 423 MAANGHELDVASIDCSIG--D-AYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCE 499 (728)
Q Consensus 423 ~~~~~~~~~~~~~~~~la--~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 499 (728)
- -+.......|+... . ......+++.|..-+.+.+..+...... .+.....+..+-......|....-...++
T Consensus 261 ~---~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~e 336 (881)
T KOG0128|consen 261 P---LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEE 336 (881)
T ss_pred c---chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 1 11111122222222 1 1223455666666655555544443211 23333444555555556676655555555
Q ss_pred HHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHHHhcCCCCCCc----HHH---
Q 004829 500 NALKIYGKPNHGIPSEEIASGLIDIAAIYQS------------MNELEQAVKLLNKALKIYGKTPGQQST----IAG--- 560 (728)
Q Consensus 500 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~--- 560 (728)
+++.-... .+.....|......-++ .+...-...++++++-.+......... +..
T Consensus 337 R~~~E~~~------~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls 410 (881)
T KOG0128|consen 337 RAVAEMVL------DRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLS 410 (881)
T ss_pred HHHHhccc------cHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHH
Confidence 55443211 11111111111111010 111111222333333222221010000 000
Q ss_pred ---HHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 004829 561 ---IEAQMGVMYYM-------TGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQ-RYTINEAADLFEEART 629 (728)
Q Consensus 561 ---~~~~la~~~~~-------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 629 (728)
.+++....|++ ..+++.-.+.|+.|...+....+.........+...|.++.. +++.+.|..++...+.
T Consensus 411 ~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imt 490 (881)
T KOG0128|consen 411 MTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMT 490 (881)
T ss_pred HHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhcccc
Confidence 01112222221 224455556677777666665444222234455555655554 3567777776665544
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHhCChhHHHH
Q 004829 630 ILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPD-VEDEKRRLAELLKEAGRVRNRKS 706 (728)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~La~~~~~~g~~~~A~~ 706 (728)
. .....+..|.....+-...|+...|..++++|+.- ...|+ ...++..+-......|.++....
T Consensus 491 y-------~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~------~~~~~~~~ev~~~~~r~Ere~gtl~~~~~ 555 (881)
T KOG0128|consen 491 Y-------GGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ------VVDPEDALEVLEFFRRFEREYGTLESFDL 555 (881)
T ss_pred C-------CcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc------CcCchhHHHHHHHHHHHHhccccHHHHhh
Confidence 3 23344446666677777789999999988888753 23443 55666666777777888877763
No 373
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.91 E-value=0.65 Score=27.13 Aligned_cols=24 Identities=29% Similarity=0.223 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 004829 645 VYSNLAGTYDAMGRIDDAIEILEY 668 (728)
Q Consensus 645 ~~~~La~~~~~~g~~~~A~~~~~~ 668 (728)
+.+.||.++..+|++++|...+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 678899999999999999998763
No 374
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.85 E-value=0.74 Score=26.90 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHH
Q 004829 268 CLHVLAAIHCSLGQYNEAIPVLER 291 (728)
Q Consensus 268 ~~~~la~~~~~~g~~~~A~~~~~~ 291 (728)
++..+|..+...|++++|...+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 467899999999999999998864
No 375
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.49 E-value=12 Score=38.45 Aligned_cols=63 Identities=10% Similarity=0.004 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829 311 GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIH 381 (728)
Q Consensus 311 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 381 (728)
+.-.|..||..+++.+-|+....+.+.+ +|....-+...|.++..+.+|.+|-.-+--+.-++
T Consensus 230 Ietklv~CYL~~rkpdlALnh~hrsI~l--------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 230 IETKLVTCYLRMRKPDLALNHSHRSINL--------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred HHHHHHHhhhhcCCCchHHHHHhhhhhc--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668899999999999999999999888 78888888889999999999999877665554433
No 376
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=87.05 E-value=39 Score=35.57 Aligned_cols=140 Identities=14% Similarity=0.064 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004829 519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQM--GVMYYMTGNYSDSYNTLKSAISKFRTSGEKK 596 (728)
Q Consensus 519 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 596 (728)
......+..++..++|..|...+...... .++... ...+..+ |..++..-++.+|.++++..+.....+
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l---- 202 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR---LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL---- 202 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh----
Confidence 34556677788999999999999998765 222222 2344444 444577889999999999887652110
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004829 597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREE 675 (728)
Q Consensus 597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~ 675 (728)
......+..+..+ -++...+...............+....-++..|.--...|+|+.|+..+-+++++.-+
T Consensus 203 -~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 203 -NQEREGLKELVEV-------LKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred -HhHHHHHHHHHHH-------HHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 0001111111111 1222222222221111000001122223333444445689999999999999887654
No 377
>PRK10941 hypothetical protein; Provisional
Probab=86.77 E-value=6.9 Score=38.71 Aligned_cols=69 Identities=9% Similarity=0.001 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829 431 DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK 507 (728)
Q Consensus 431 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (728)
-....+.++-.+|...++++.|+.+.+..+.+ .|....-+...|.+|.++|.+..|...++..++.+..
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 44567788889999999999999999999998 7777788888999999999999999999999988533
No 378
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.64 E-value=64 Score=36.72 Aligned_cols=49 Identities=10% Similarity=-0.030 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhh
Q 004829 246 AKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIP 296 (728)
Q Consensus 246 ~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 296 (728)
|.-|+.+.+.. ..+....+.++...|..++..|++++|...|-+.+...
T Consensus 350 y~~Ai~LAk~~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 350 YKVAINLAKSQ--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 33444444443 23334567777888999999999999999999888653
No 379
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=86.30 E-value=17 Score=39.07 Aligned_cols=85 Identities=13% Similarity=0.103 Sum_probs=56.9
Q ss_pred ChhHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc
Q 004829 429 ELDVASIDCSIGDAYLS--LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYG 506 (728)
Q Consensus 429 ~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 506 (728)
-.....++.+||.+-.. ...-..++.+|.+|+...+..++..| ..-|..+|..|++.++|.+|+..+-.+-+..+
T Consensus 273 l~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~ 349 (618)
T PF05053_consen 273 LARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVIR 349 (618)
T ss_dssp TTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT
T ss_pred hhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666665432 23356789999999999999875433 45678899999999999999999999988887
Q ss_pred CCCCCCCcHH
Q 004829 507 KPNHGIPSEE 516 (728)
Q Consensus 507 ~~~~~~~~~~ 516 (728)
......++.+
T Consensus 350 ~YnY~reDeE 359 (618)
T PF05053_consen 350 KYNYSREDEE 359 (618)
T ss_dssp TSB--GGGHH
T ss_pred HcccCccHHH
Confidence 7654333333
No 380
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.09 E-value=66 Score=36.41 Aligned_cols=31 Identities=13% Similarity=0.112 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829 471 HPAVASVFVRLADLYHKIGKLRDSKSYCENA 501 (728)
Q Consensus 471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 501 (728)
......+....|.-....|++++|+.+|.-+
T Consensus 410 ~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La 440 (613)
T PF04097_consen 410 EDFLREIIEQAAREAEERGRFEDAILLYHLA 440 (613)
T ss_dssp SHHHHHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555566677777777777777666643
No 381
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=85.95 E-value=36 Score=33.14 Aligned_cols=181 Identities=14% Similarity=0.071 Sum_probs=97.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHH-HhcCCCh
Q 004829 354 CRYVAEAHVQSLQFDEAEKICQMALDIH-RENTSPASIEEAADRRLMGLICD-SKGDYEAALEHYVLASMSM-AANGHEL 430 (728)
Q Consensus 354 ~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~-~~~~~~~ 430 (728)
+..+|.+..+.++|++...+..++.... +..... .-.+.|..+|- ..|....+...+.. ++.- ...+...
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~------EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~~~ 76 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTV------EERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGNED 76 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCH------HHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCchH
Confidence 4557888889999999999999987752 111111 11334444443 24556666666554 2111 1111111
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHc-----CC-----hHHHHHH
Q 004829 431 DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH---PAVASVFVRLADLYHKI-----GK-----LRDSKSY 497 (728)
Q Consensus 431 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~-----g~-----~~~A~~~ 497 (728)
.. .+..-|. ..--++-...+...+.+....+-+.. ...+..+-..|..|... |+ .+.|...
T Consensus 77 ~~-----~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~a 150 (244)
T smart00101 77 HV-----ASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVA 150 (244)
T ss_pred HH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 11 1111111 11123445566777777665543321 22233333445555433 22 4588999
Q ss_pred HHHHHHHHcCCCCCCCcHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHH
Q 004829 498 CENALKIYGKPNHGIPSEEIASGLIDIAAI-YQSMNELEQAVKLLNKALKIY 548 (728)
Q Consensus 498 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~ 548 (728)
|+.|+++.....+ +.+|-......+.+.. |.-+++.++|..+.++|+.-.
T Consensus 151 Y~~A~e~a~~~L~-pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 151 YKSAQDIALAELP-PTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHccCC-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999876443 3455444444555554 445799999988777766543
No 382
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=85.58 E-value=1.4 Score=41.30 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=51.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 610 ACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 610 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
...+.++.+.|.+.|.+++.+ -|+....|+.+|....+.|+++.|...|++.+++.
T Consensus 4 ~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 445678999999999999999 89999999999999999999999999999999863
No 383
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.49 E-value=13 Score=36.81 Aligned_cols=71 Identities=13% Similarity=0.044 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q 004829 308 KFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTS 386 (728)
Q Consensus 308 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 386 (728)
.+.++..++..+...|+++.++..+++.+.. +|..-..|..+-..|...|+...|+..|++.-.......+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 4456889999999999999999999999988 8888899999999999999999999999999886544443
No 384
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=85.39 E-value=4.6 Score=42.65 Aligned_cols=90 Identities=18% Similarity=0.095 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 004829 616 TINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELL 695 (728)
Q Consensus 616 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~ 695 (728)
....|+..|.+++.. .|.....+.+.|.++.+.+=...+...++.+.... .-+|....+++.|++++
T Consensus 389 ~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Al-----rln~s~~kah~~la~aL 455 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVAL-----RLNPSIQKAHFRLARAL 455 (758)
T ss_pred HHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhc-----cCChHHHHHHHHHHHHH
Confidence 456677778887776 66777777788888877654444444444333221 14578888889999999
Q ss_pred HHhCChhHHHHHHHHHHHhhcccc
Q 004829 696 KEAGRVRNRKSRSLVTFLDSNSQN 719 (728)
Q Consensus 696 ~~~g~~~~A~~~~l~~ll~~~~~~ 719 (728)
..++++.+|+ .+...+.-.+|..
T Consensus 456 ~el~r~~eal-~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 456 NELTRYLEAL-SCHWALQMSFPTD 478 (758)
T ss_pred HHHhhHHHhh-hhHHHHhhcCchh
Confidence 9999999988 7777777777744
No 385
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=85.38 E-value=14 Score=31.11 Aligned_cols=74 Identities=18% Similarity=0.121 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829 436 DCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH-------PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP 508 (728)
Q Consensus 436 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 508 (728)
+..+|...+..+++-.++-+|++|+.+.++...... .-......+||..+..+|+.+=.++|++-|-+.....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 345677777777888888888888877766521111 1123456789999999999999999999877665444
Q ss_pred C
Q 004829 509 N 509 (728)
Q Consensus 509 ~ 509 (728)
.
T Consensus 84 i 84 (140)
T PF10952_consen 84 I 84 (140)
T ss_pred c
Confidence 3
No 386
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=85.28 E-value=1 Score=42.17 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=55.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccccC
Q 004829 651 GTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLKED 723 (728)
Q Consensus 651 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~~~ 723 (728)
......++.+.|.+.|.+++++. |+....+++++....+.|+++.|. +.+++.++.+|...-..
T Consensus 3 ~~~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa-~a~~~~L~ldp~D~~ga 66 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAA-AAYEEVLELDPEDHGGA 66 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHH-HHHHHHHcCCcccccch
Confidence 34567789999999999999965 889999999999999999999999 99999999998765443
No 387
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=84.99 E-value=6.8 Score=30.24 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004829 221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHV 271 (728)
Q Consensus 221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~ 271 (728)
.+..+...|..+-..| +|++|+.+|.+++..|.......+++..-..+..
T Consensus 5 ~a~~l~~~Ave~D~~g-~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ 54 (77)
T cd02683 5 AAKEVLKRAVELDQEG-RFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQ 54 (77)
T ss_pred HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 3456778888888887 9999999999999998877655566555444433
No 388
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.83 E-value=64 Score=35.08 Aligned_cols=174 Identities=16% Similarity=0.141 Sum_probs=102.9
Q ss_pred CCHHHHHHHHHHHHHHHHhc------CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC----------
Q 004829 407 GDYEAALEHYVLASMSMAAN------GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGEN---------- 470 (728)
Q Consensus 407 g~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------- 470 (728)
..|++|...|.-+...+..+ ...|.....+..++.++..+|+.+-|....+++|-.+...+-+.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 34566777666665554322 24577788899999999999999999999999998877654211
Q ss_pred ---CH---HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829 471 ---HP---AVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKA 544 (728)
Q Consensus 471 ---~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 544 (728)
.| ....+++..-..+...|-+..|.++++-.+.+... .+|. -+++.+-....+..+|+=-+.+++..
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~-----eDPl--~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPS-----EDPL--GILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc-----CCch--hHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 12 22334444455566789999999999988887321 1221 12222233334445555444444433
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHH
Q 004829 545 LKIYGKTPGQQSTIAGIEAQMGVMYYMTGN---YSDSYNTLKSAISKFR 590 (728)
Q Consensus 545 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~ 590 (728)
... ... ...+.... -..+|..|..... -..|...+.+|+.++.
T Consensus 405 e~~-n~l-~~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 405 ENM-NKL-SQLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred Hhh-ccH-hhcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 221 111 11111111 1245566665554 5678888888887643
No 389
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=84.62 E-value=9.3 Score=34.61 Aligned_cols=150 Identities=15% Similarity=0.124 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-
Q 004829 415 HYVLASMSMAANGHELDVASIDCSIGDAYLS-----LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKI- 488 (728)
Q Consensus 415 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~- 488 (728)
.|+.|..++..+-+....+...+.+|..++. .+++..|++.+..+-+. ....+..++|.+++.-
T Consensus 50 nF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC~~~gLl~~~g~ 119 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQACRYLGLLHWNGE 119 (248)
T ss_pred HHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHHhhhhhhhccCc
Confidence 4555555555555556666677777765542 45788899888887663 2344556667666542
Q ss_pred ----CC--hHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH------------------------cCCHHHHH
Q 004829 489 ----GK--LRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS------------------------MNELEQAV 538 (728)
Q Consensus 489 ----g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~------------------------~g~~~~A~ 538 (728)
++ ..+|++++.++.++- ...+.+.|...|.. ..+.+.|.
T Consensus 120 ~~r~~dpd~~Ka~~y~traCdl~-----------~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~ 188 (248)
T KOG4014|consen 120 KDRKADPDSEKAERYMTRACDLE-----------DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKAL 188 (248)
T ss_pred CCccCCCCcHHHHHHHHHhccCC-----------CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHH
Confidence 23 678889998887652 12233333333332 23445555
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCC
Q 004829 539 KLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYM----TGNYSDSYNTLKSAISKFRTSGE 594 (728)
Q Consensus 539 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 594 (728)
++--+|-++. ...+..++.+.|.. -.+.++|..+-.+|.++.+.+..
T Consensus 189 qfa~kACel~---------~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~k 239 (248)
T KOG4014|consen 189 QFAIKACELD---------IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELRK 239 (248)
T ss_pred HHHHHHHhcC---------ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHHc
Confidence 5554444331 12344456665543 23677888888888888766543
No 390
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=84.47 E-value=6.9 Score=29.43 Aligned_cols=48 Identities=27% Similarity=0.281 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004829 222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLH 270 (728)
Q Consensus 222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 270 (728)
+..+...|..+-..| ++++|+.+|.+++..+.......+++.....+.
T Consensus 5 A~~~~~~Av~~D~~g-~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~ 52 (69)
T PF04212_consen 5 AIELIKKAVEADEAG-NYEEALELYKEAIEYLMQALKSESNPERRQALR 52 (69)
T ss_dssp HHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 455677888888887 999999999999998876655444444444333
No 391
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=84.44 E-value=21 Score=30.72 Aligned_cols=87 Identities=13% Similarity=0.126 Sum_probs=58.6
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 004829 489 GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVM 568 (728)
Q Consensus 489 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 568 (728)
+.-..-...+++++..+.....-.+++....+|...+.... .+...|...... +.-...+..|...|..
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~-----~IG~~~A~fY~~wA~~ 108 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK-----GIGTKLALFYEEWAEF 108 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH-----TTSTTBHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc-----CccHHHHHHHHHHHHH
Confidence 45566677889999888663222345566666666555332 677777655443 3334457788889999
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 004829 569 YYMTGNYSDSYNTLKSAI 586 (728)
Q Consensus 569 ~~~~g~~~~A~~~~~~al 586 (728)
+...|++.+|...|+.++
T Consensus 109 le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 109 LEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhC
Confidence 999999999999998875
No 392
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=84.36 E-value=51 Score=34.69 Aligned_cols=65 Identities=12% Similarity=-0.077 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829 269 LHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEI 338 (728)
Q Consensus 269 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 338 (728)
....+..++..++|..|...+....... .+... .........|..++..-++.+|..+++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl---~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRL---PGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC---Cchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3345667788899999999999877631 11111 11222333445556677889999998887665
No 393
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=84.33 E-value=96 Score=36.75 Aligned_cols=109 Identities=15% Similarity=0.058 Sum_probs=77.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHH
Q 004829 271 VLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRV 350 (728)
Q Consensus 271 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 350 (728)
....++.....|++|+..|++...-++ |... -..+.+.+|.+...+-.-..--+.|.+|+..+..+.+ .+..
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 551 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFP---GRKE---GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGA 551 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCC---Cccc---chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCC
Confidence 456777888889999999998776552 2222 1235778888776654333333567777777666532 3445
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 004829 351 GETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP 387 (728)
Q Consensus 351 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 387 (728)
.--|..-|.+|...|+|++-+++|.-|++.++..+.-
T Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 552 PLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred chHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 5567778889999999999999999999998877654
No 394
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=83.96 E-value=2.6 Score=41.19 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=51.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 607 MGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM 672 (728)
Q Consensus 607 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~ 672 (728)
.|.-....|+.++|..+|+.|+.+ .|...+++..+|......++.-+|-.+|-+|+.+
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 344455679999999999999999 7888889999999999999999999999999885
No 395
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=83.83 E-value=51 Score=33.22 Aligned_cols=98 Identities=19% Similarity=0.156 Sum_probs=71.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004829 402 ICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRL 481 (728)
Q Consensus 402 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 481 (728)
+..+.++.++|++++++..........+..+......+|.++...|+..++.+.+...-.......+- .+.....++.+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v-~~~Vh~~fY~l 162 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV-TSNVHSSFYSL 162 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC-ChhhhhhHHHH
Confidence 44566799999999999988877777766778888899999999999999999988887766555322 34344555555
Q ss_pred HHH-HHHcCChHHHHHHHHH
Q 004829 482 ADL-YHKIGKLRDSKSYCEN 500 (728)
Q Consensus 482 a~~-~~~~g~~~~A~~~~~~ 500 (728)
+.- |...|++.......-+
T Consensus 163 ssqYyk~~~d~a~yYr~~L~ 182 (380)
T KOG2908|consen 163 SSQYYKKIGDFASYYRHALL 182 (380)
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 554 4456777654443333
No 396
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=83.42 E-value=3.2 Score=40.59 Aligned_cols=72 Identities=22% Similarity=0.127 Sum_probs=59.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 004829 399 MGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVF 478 (728)
Q Consensus 399 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 478 (728)
.+.-....|+.++|...|+.|+.+ .|....++..+|.+.....+.-+|-.+|-+||.+ .|....++
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlal------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti--------sP~nseAL 187 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALAL------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI--------SPGNSEAL 187 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhc------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee--------CCCchHHH
Confidence 344455689999999999999877 5777889999999999999999999999999998 77777777
Q ss_pred HHHHHH
Q 004829 479 VRLADL 484 (728)
Q Consensus 479 ~~la~~ 484 (728)
.+.+..
T Consensus 188 vnR~RT 193 (472)
T KOG3824|consen 188 VNRART 193 (472)
T ss_pred hhhhcc
Confidence 666543
No 397
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=83.38 E-value=89 Score=35.60 Aligned_cols=152 Identities=9% Similarity=-0.036 Sum_probs=86.9
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 004829 347 DHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAAN 426 (728)
Q Consensus 347 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 426 (728)
++.....+..|-.+++..|++++-...-.++.++++-.. +++.- |..--......++...+...|++++.-....
T Consensus 109 ~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~---~lWl~--Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v 183 (881)
T KOG0128|consen 109 NSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPP---HLWLE--WLKDELSMTQSEERKEVEELFEKALGDYNSV 183 (881)
T ss_pred cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCh---HHHHH--HHHHHHhhccCcchhHHHHHHHHHhcccccc
Confidence 445556667777788889998887776666666664332 11111 1111111223367778888888886432111
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 427 GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI 504 (728)
Q Consensus 427 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (728)
......+......+..+...++++.....|.+++...-.... ........+..+...|...-..++-+.++...+..
T Consensus 184 ~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~ 260 (881)
T KOG0128|consen 184 PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ 260 (881)
T ss_pred hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 111222333333344456667888889999999876443322 12334556666666666666666667777666654
No 398
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.31 E-value=3.7 Score=27.65 Aligned_cols=25 Identities=40% Similarity=0.578 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 647 SNLAGTYDAMGRIDDAIEILEYVVG 671 (728)
Q Consensus 647 ~~La~~~~~~g~~~~A~~~~~~al~ 671 (728)
+.||.+|..+|+.+.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6799999999999999999999986
No 399
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.22 E-value=13 Score=32.71 Aligned_cols=82 Identities=15% Similarity=-0.004 Sum_probs=57.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 004829 396 RRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVA 475 (728)
Q Consensus 396 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 475 (728)
+..+...-...++++++...+...- .+ .|....+...-|.++...|+|.+|+..++...+- .+...
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALr-vL-----rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~--------~~~~p 78 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALR-VL-----RPNLKELDMFDGWLLIARGNYDEAARILRELLSS--------AGAPP 78 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH-Hh-----CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc--------CCCch
Confidence 3444445555888888888776433 22 4666677778889999999999999999988664 33445
Q ss_pred HHHHHHHHHHHHcCCh
Q 004829 476 SVFVRLADLYHKIGKL 491 (728)
Q Consensus 476 ~~~~~la~~~~~~g~~ 491 (728)
...-.++.|+..+|+.
T Consensus 79 ~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 79 YGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHHHHHhcCCh
Confidence 5555677777777764
No 400
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.10 E-value=21 Score=37.45 Aligned_cols=73 Identities=12% Similarity=0.081 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829 562 EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKE 634 (728)
Q Consensus 562 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 634 (728)
+..|.+++..+|+|..|++.++..----..+...-+.....+++.+|-+|+.+++|.+|+..|...+-...+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467788899999999988876432111112222234455688999999999999999999999998775543
No 401
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=81.68 E-value=12 Score=28.76 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004829 222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLH 270 (728)
Q Consensus 222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 270 (728)
+..+...|...-..| ++++|+.+|.+|+..+.......+++.....+.
T Consensus 6 A~~l~~~Av~~D~~g-~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~ 53 (75)
T cd02678 6 AIELVKKAIEEDNAG-NYEEALRLYQHALEYFMHALKYEKNPKSKESIR 53 (75)
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 456777788888887 999999999999999877655555554444333
No 402
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=81.39 E-value=17 Score=31.23 Aligned_cols=87 Identities=14% Similarity=0.128 Sum_probs=54.0
Q ss_pred CChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 004829 280 GQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAE 359 (728)
Q Consensus 280 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 359 (728)
+.-..-..++++++........-.+....+.+|...+. .-. ++..+|..+... .-....+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~----~~~--~~~~if~~l~~~------~IG~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD----LSS--DPREIFKFLYSK------GIGTKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT----TBS--HHHHHHHHHHHH------TTSTTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH----Hcc--CHHHHHHHHHHc------CccHHHHHHHHHHHH
Confidence 45556667888888776432222222222333333333 222 788888766544 113456778888899
Q ss_pred HHHHhCCHHHHHHHHHHHH
Q 004829 360 AHVQSLQFDEAEKICQMAL 378 (728)
Q Consensus 360 ~~~~~g~~~~A~~~~~~al 378 (728)
.+...|++.+|...|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998875
No 403
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=81.15 E-value=19 Score=28.77 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 004829 329 ILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHREN 384 (728)
Q Consensus 329 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 384 (728)
+..+++.+.. +|....+.+.+|..+...|++++|++.+-.++...+..
T Consensus 8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 3445566665 78899999999999999999999999888887665444
No 404
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.74 E-value=27 Score=34.38 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004829 561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHH 640 (728)
Q Consensus 561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 640 (728)
.+...+..|...|.+.+|+.+.++++.+ ++.....+..+-.++...|+--.|...|++.-+.++..+|-+-.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd 352 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD 352 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence 3445678899999999999999999987 56566778888889999999999999999988887777765544
Q ss_pred hHH
Q 004829 641 DTL 643 (728)
Q Consensus 641 ~~~ 643 (728)
+..
T Consensus 353 dsi 355 (361)
T COG3947 353 DSI 355 (361)
T ss_pred hhH
Confidence 433
No 405
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.61 E-value=5.5 Score=40.14 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHH
Q 004829 643 LGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRK 705 (728)
Q Consensus 643 ~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~ 705 (728)
+.-+...|+-.+.++++++|...|..|..+..+++|..|-++..+++..|..++..++...+.
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677888999999999999999999999999999999999999999999999999988876
No 406
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.19 E-value=81 Score=33.00 Aligned_cols=121 Identities=17% Similarity=-0.003 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC--chhHhHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHH
Q 004829 266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ--DHALAKFAGCMQLGDTYAMLGQI---ENSILCYTAGLEIQR 340 (728)
Q Consensus 266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~ 340 (728)
+..++..|.+++....|.+|+.++-.|-+.+...... +.....+-.-..+.+||+.+.+. ++|..-+..+-+-+.
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 4456667788888888999888887776654211100 00011122345677888887653 455555554444444
Q ss_pred HHc-----------CCCChHHH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q 004829 341 QVL-----------GETDHRVG---ETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTS 386 (728)
Q Consensus 341 ~~~-----------~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 386 (728)
..+ |+..|+.+ ..+..-|.+.+.+|+-++|.++++.+...+.+..-
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki 302 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKI 302 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeec
Confidence 433 33444433 34556788889999999999999988877665543
No 407
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=79.49 E-value=16 Score=28.08 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004829 222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVM 267 (728)
Q Consensus 222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~ 267 (728)
+..+...|..+-..| ++++|+.+|.+++..+.......+++....
T Consensus 8 A~~li~~Av~~d~~g-~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~ 52 (77)
T smart00745 8 AKELISKALKADEAG-DYEEALELYKKAIEYLLEGIKVESDSKRRE 52 (77)
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence 455677787888887 999999999999999887665555554433
No 408
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=79.39 E-value=15 Score=28.06 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004829 643 LGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLG 678 (728)
Q Consensus 643 ~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~ 678 (728)
+..+...|.-+...|++++|+.+|++++++..+.+.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~ 41 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVK 41 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788999999999999999998877764
No 409
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=79.34 E-value=16 Score=28.05 Aligned_cols=50 Identities=18% Similarity=0.111 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004829 222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVL 272 (728)
Q Consensus 222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l 272 (728)
+..++..|...-..| ++++|+.+|.+++..|.......+++..-..+...
T Consensus 6 Ai~lv~~Av~~D~~g-~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k 55 (75)
T cd02684 6 AIALVVQAVKKDQRG-DAAAALSLYCSALQYFVPALHYETDAQRKEALRQK 55 (75)
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 456777888888886 99999999999999988776666666554444433
No 410
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=78.90 E-value=17 Score=27.76 Aligned_cols=49 Identities=24% Similarity=0.184 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004829 222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHV 271 (728)
Q Consensus 222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~ 271 (728)
+..+...|...-..| ++++|+.+|..|+..+.......+++..-..+..
T Consensus 6 a~~l~~~Av~~D~~g-~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~ 54 (75)
T cd02656 6 AKELIKQAVKEDEDG-NYEEALELYKEALDYLLQALKAEKEPKLRKLLRK 54 (75)
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 345666777777886 9999999999999998877655555544333333
No 411
>PRK09169 hypothetical protein; Validated
Probab=78.77 E-value=2.1e+02 Score=37.03 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhCChhH
Q 004829 688 KRRLAELLKEAGRVRN 703 (728)
Q Consensus 688 ~~~La~~~~~~g~~~~ 703 (728)
-..++.++..+.+|.+
T Consensus 708 aq~lAn~LnAlsKwp~ 723 (2316)
T PRK09169 708 AQGVANALNALSKWPE 723 (2316)
T ss_pred HHHHHHHHHHHHhccC
Confidence 3345555555555444
No 412
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.68 E-value=29 Score=29.96 Aligned_cols=65 Identities=6% Similarity=-0.049 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829 394 ADRRLMGLICDSKGD---YEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTA 462 (728)
Q Consensus 394 ~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 462 (728)
...+++++++....+ ..+.+..++..+. ...+...-...+.|+..+++.++|+.++.+.+..++.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 356777777776554 4555666655443 2333445567888999999999999999999999887
No 413
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.03 E-value=79 Score=31.66 Aligned_cols=108 Identities=17% Similarity=0.090 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC----CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829 515 EEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ----QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR 590 (728)
Q Consensus 515 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 590 (728)
...+.+...||.+|.+.++|..|-..+.- .+...|. .......+..+|.+|+..++..+|..+..++-=+..
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~----I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a 175 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVG----IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQA 175 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhc----cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhh
Confidence 45677888999999999999988766542 1211121 123455677899999999999999999988754433
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829 591 TSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEAR 628 (728)
Q Consensus 591 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 628 (728)
.. .++......-.-.|+++-..++|-+|...|-+..
T Consensus 176 ~~--~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 176 ES--SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred cc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 2233223333334666667777777766666543
No 414
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=77.94 E-value=83 Score=31.84 Aligned_cols=94 Identities=7% Similarity=0.072 Sum_probs=68.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 004829 527 IYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQ 606 (728)
Q Consensus 527 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 606 (728)
+....++.++|++++++..+..... ..+..+..+...+|.+++..|+..++.+.+...-..........+. ....++.
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~-~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~-Vh~~fY~ 161 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEY-KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSN-VHSSFYS 161 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChh-hhhhHHH
Confidence 3455669999999999998887765 4445667778889999999999999999999998887777665432 3344555
Q ss_pred HHH-HHHHcCCHHHHHH
Q 004829 607 MGL-ACVQRYTINEAAD 622 (728)
Q Consensus 607 la~-~~~~~g~~~~A~~ 622 (728)
++. .|...|++..+..
T Consensus 162 lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 162 LSSQYYKKIGDFASYYR 178 (380)
T ss_pred HHHHHHHHHHhHHHHHH
Confidence 554 4445577665433
No 415
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=76.82 E-value=2.9e+02 Score=37.53 Aligned_cols=139 Identities=15% Similarity=0.135 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004829 473 AVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTP 552 (728)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 552 (728)
..+.+.+..|.+....|-++.++..+.+...+-. ..-.+...-+..-+.+|.... ..+..+++.....-
T Consensus 2734 e~A~~in~fakvArkh~l~~vcl~~L~~iytlp~-----veiqdaF~K~req~~c~l~~~------~e~~~gLevi~sTN 2802 (3550)
T KOG0889|consen 2734 ELAWAINRFAKVARKHGLPDVCLNQLAKIYTLPN-----VEIQDAFQKLREQAKCYLQNK------NELKTGLEVIESTN 2802 (3550)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccCc-----chHHHHHHHHHHHHHHHhcCh------HHHHHHHHHHhccc
Confidence 3455666667777777777777776666554411 011111122222233333332 22233333333220
Q ss_pred ---CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc----CC----HHHHH
Q 004829 553 ---GQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR----YT----INEAA 621 (728)
Q Consensus 553 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~----~~~A~ 621 (728)
-.....+..+...|..+.+.|+.++|-..|..|+++... .+.+|..-|..+..+ .. -..|+
T Consensus 2803 l~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~--------l~KaW~~Wg~y~~~~f~~e~~ni~~a~~av 2874 (3550)
T KOG0889|consen 2803 LMYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDG--------LGKAWAEWGKYLDNRFNKEPVNISFACNAV 2874 (3550)
T ss_pred HHHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHhccCcccHHHHHHH
Confidence 011234566778899999999999999999999998443 344555555433322 22 23455
Q ss_pred HHHHHHHHH
Q 004829 622 DLFEEARTI 630 (728)
Q Consensus 622 ~~~~~al~~ 630 (728)
.+|-+|...
T Consensus 2875 sCyLqA~~~ 2883 (3550)
T KOG0889|consen 2875 SCYLQAARL 2883 (3550)
T ss_pred HHHHHHhcc
Confidence 555555554
No 416
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=76.54 E-value=88 Score=31.41 Aligned_cols=57 Identities=21% Similarity=0.119 Sum_probs=38.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 439 IGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIY 505 (728)
Q Consensus 439 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 505 (728)
+-....+..+..+-+.....++++ ++..+.+|..||.-- .--..+|...++++++..
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~ 246 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEE--ATTIVDAERLFKQALKAG 246 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHH
Confidence 334445556666677777788888 788888887776532 234567888888888764
No 417
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=76.51 E-value=11 Score=39.91 Aligned_cols=89 Identities=17% Similarity=0.151 Sum_probs=64.0
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc---CChHHHHHHHHHHHHHHcCCCCCCCcHHHHHH
Q 004829 444 LSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKI---GKLRDSKSYCENALKIYGKPNHGIPSEEIASG 520 (728)
Q Consensus 444 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 520 (728)
+..+....|+..|.+++.. .|.....+.+.+.++.+. |+.-.|+..+..|+++ .+....+
T Consensus 385 ly~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl---------n~s~~ka 447 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL---------NPSIQKA 447 (758)
T ss_pred hhhHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC---------ChHHHHH
Confidence 3344566777888888776 667777788888877764 4555566666666665 5667888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004829 521 LIDIAAIYQSMNELEQAVKLLNKALKIYG 549 (728)
Q Consensus 521 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 549 (728)
++.|+.++...+++.+|+.+...+....+
T Consensus 448 h~~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 99999999999999998887766554444
No 418
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.24 E-value=7.9 Score=26.09 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Q 004829 437 CSIGDAYLSLARFDEAIFSYHKALT 461 (728)
Q Consensus 437 ~~la~~~~~~g~~~~A~~~~~~al~ 461 (728)
+.+|..|..+|+++.|...+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4678888888888888888888875
No 419
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=75.51 E-value=1.9e+02 Score=34.69 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=32.5
Q ss_pred HHHHHHHcCChHHHHHHHHHH------HHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829 481 LADLYHKIGKLRDSKSYCENA------LKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKAL 545 (728)
Q Consensus 481 la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 545 (728)
-|.+|...|+.++|+..|+.+ +.+..+... ........-..|+.-+..++++-+|-+...+.+
T Consensus 958 Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 355666677777777766543 333332221 111222223455566666666666666555443
No 420
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=75.14 E-value=1.9 Score=44.58 Aligned_cols=73 Identities=23% Similarity=0.343 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHh
Q 004829 626 EARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEA 698 (728)
Q Consensus 626 ~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~ 698 (728)
+++-+.++++++.||+..-.....|-+|..+|+++.-++++.-|+.+.++.+.|-.|.+...+...++++..+
T Consensus 320 qaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~m 392 (615)
T KOG0508|consen 320 QALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFM 392 (615)
T ss_pred HHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHH
Confidence 5666777889999999876666788999999999999999999999999999999999999999888877643
No 421
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.85 E-value=1.1e+02 Score=31.94 Aligned_cols=67 Identities=9% Similarity=-0.017 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHH
Q 004829 309 FAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQF-DEAEKICQMAL 378 (728)
Q Consensus 309 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al 378 (728)
+.+++.+-.|...-|+|+.|...+.+++...+.+ .-.|.....++ +-..+.+.++. ..|..++...+
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKei--GVePsLsSyh~-iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEI--GVEPSLSSYHL-IIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh--CCCcchhhHHH-HHHHhcccCCchhhhHHHHHHHH
Confidence 3457788888889999999999999998887765 22455544443 33344444443 33555554444
No 422
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=74.76 E-value=50 Score=28.29 Aligned_cols=107 Identities=18% Similarity=0.088 Sum_probs=67.1
Q ss_pred CCCCCC-hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhh
Q 004829 215 GLGNPA-LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSV 293 (728)
Q Consensus 215 ~~~~p~-~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 293 (728)
..++|- ....+.......+-.|+.-..-..+++++++.+.....=.+++.....+...+... .++.++|..+.
T Consensus 17 ~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~ 90 (125)
T smart00777 17 EGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLY 90 (125)
T ss_pred cCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHH
Confidence 455663 33444555554444543444556777888887766654455677666666666542 44566666554
Q ss_pred hhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004829 294 EIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTA 334 (728)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 334 (728)
.. ..|...+. .|...|..+...|++.+|..+|+.
T Consensus 91 ~~---~IG~~~Al----fYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 91 SK---GIGTKLAL----FYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HC---CcchhhHH----HHHHHHHHHHHcCCHHHHHHHHHc
Confidence 32 23344433 378889999999999999998874
No 423
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.94 E-value=1.3e+02 Score=35.68 Aligned_cols=183 Identities=14% Similarity=0.021 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhhhhhhh------------------hcCCch--hHhHHHHHHHHHHHHHHhCCHH
Q 004829 267 MCLHVLAAIHCSLGQYNEAIPVLERSVEIPVL------------------EDGQDH--ALAKFAGCMQLGDTYAMLGQIE 326 (728)
Q Consensus 267 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------------~~~~~~--~~~~~~~~~~la~~~~~~g~~~ 326 (728)
...+.+|.+|...|...+|+.+|.+|..-... ..|... +......|...-+++..-+..+
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E 1000 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAE 1000 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHH
Confidence 34567899999999999999999998763210 011111 1111222333344445555666
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHc
Q 004829 327 NSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSK 406 (728)
Q Consensus 327 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~ 406 (728)
.++++..+|++. ++++.|..+..+..+-..+...|.+-+|...+-+- . +....-.++..+-.+++..
T Consensus 1001 ~vcQlA~~AIe~----l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n-------p--dserrrdcLRqlvivLfec 1067 (1480)
T KOG4521|consen 1001 EVCQLAVKAIEN----LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN-------P--DSERRRDCLRQLVIVLFEC 1067 (1480)
T ss_pred HHHHHHHHHHHh----CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC-------C--cHHHHHHHHHHHHHHHHhc
Confidence 666666666655 56667888888887777788888887776543322 1 1222334677788888888
Q ss_pred CCHHHHHH--------HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHH
Q 004829 407 GDYEAALE--------HYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIF-SYHKALTA 462 (728)
Q Consensus 407 g~~~~A~~--------~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~ 462 (728)
|+++.-.. .++.-+.-.............|..|=..+...++|.+|-. .|+.+..+
T Consensus 1068 g~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl 1132 (1480)
T KOG4521|consen 1068 GELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRL 1132 (1480)
T ss_pred cchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Confidence 87654322 1111010011111122223334444455677788877654 45555554
No 424
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.96 E-value=20 Score=38.85 Aligned_cols=79 Identities=20% Similarity=0.196 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHH
Q 004829 521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALF 600 (728)
Q Consensus 521 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 600 (728)
...++..+..+|-.++|++ +..+. ...-.+..+.|+++.|.++..++-..
T Consensus 617 rt~va~Fle~~g~~e~AL~-------~s~D~-----------d~rFelal~lgrl~iA~~la~e~~s~------------ 666 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALE-------LSTDP-----------DQRFELALKLGRLDIAFDLAVEANSE------------ 666 (794)
T ss_pred hhhHHhHhhhccchHhhhh-------cCCCh-----------hhhhhhhhhcCcHHHHHHHHHhhcch------------
Confidence 4556667777776666554 33222 12234556778888887766655322
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 601 GIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
.-|..||.+.+..+++..|.++|.++..+
T Consensus 667 -~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 667 -VKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred -HHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 35677888888888888888888887654
No 425
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.95 E-value=31 Score=37.49 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=39.4
Q ss_pred HHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829 274 AIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEI 338 (728)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 338 (728)
.+..++|+++.|..+..++-.. . -|..||.+....+++..|.++|.++..+
T Consensus 645 elal~lgrl~iA~~la~e~~s~----------~----Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEANSE----------V----KWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhcch----------H----HHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 4456678888887776664432 1 2899999999999999999999988766
No 426
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=72.63 E-value=1.1e+02 Score=30.70 Aligned_cols=183 Identities=13% Similarity=-0.029 Sum_probs=96.1
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhh
Q 004829 216 LGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI 295 (728)
Q Consensus 216 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 295 (728)
.-.|+....++..|...+.-| +|..|-.+.-.-..+. ..+++....++...-..-.-..+|+-|++.+.+.-+.
T Consensus 123 nf~~e~i~~lykyakfqyeCG-NY~gAs~yLY~~r~l~-----~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 123 NFTPERIETLYKYAKFQYECG-NYSGASDYLYFYRALV-----SDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred CCCHHHHHHHHHHHHHHHhcc-CcccHHHHHHHHHHhc-----CCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 346788899999999999998 9999988765544432 4444544444443333445568999999999887665
Q ss_pred hhhhcCCchhH-hHHHHHHHHHHHHHHhCCH----HHHHHHHH------HHHHHHHHHcCCCChHHHHHHHHHHHHHHHh
Q 004829 296 PVLEDGQDHAL-AKFAGCMQLGDTYAMLGQI----ENSILCYT------AGLEIQRQVLGETDHRVGETCRYVAEAHVQS 364 (728)
Q Consensus 296 ~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~----~~A~~~~~------~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 364 (728)
.....-..... ..-.+|. +-+..+-.=++ +.-++.|- .+++. ..+..+..|+.+..-.
T Consensus 197 IDs~~f~~~~~~l~qRtWL-iHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt----------~cPhllRYLatAvvtn 265 (432)
T KOG2758|consen 197 IDSKSFSTSAQQLQQRTWL-IHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQT----------SCPHLLRYLATAVVTN 265 (432)
T ss_pred HcccccccHHHHHHHHHHH-HHHHHHhhccCCChhhHHHHHHccCHHHHHHHHh----------hCHHHHHHHHHHhhcc
Confidence 42111111110 0011111 11111111122 22222221 12221 2223445555544433
Q ss_pred -CCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 365 -LQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMS 422 (728)
Q Consensus 365 -g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 422 (728)
.....+++-+-+.++.-.-.. .++ ....-.+.+-.-+|+.|...++++-..
T Consensus 266 k~~rr~~lkdlvkVIqqE~ysY--kDP-----iteFl~clyvn~DFdgAq~kl~eCeeV 317 (432)
T KOG2758|consen 266 KRRRRNRLKDLVKVIQQESYSY--KDP-----ITEFLECLYVNYDFDGAQKKLRECEEV 317 (432)
T ss_pred hHhhHHHHHHHHHHHHHhcccc--CCc-----HHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 455666666666665432221 111 223344566677889998888776544
No 427
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=72.56 E-value=71 Score=28.52 Aligned_cols=190 Identities=16% Similarity=0.089 Sum_probs=114.3
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 004829 489 GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVM 568 (728)
Q Consensus 489 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 568 (728)
.++++.+-+|++.+-+. ...++...+........-+.-++.+++--.++-+..+..
T Consensus 12 qneekrLiffKkll~Iv-----------iiisl~~itiMvI~nnnk~~~i~nnqKngDI~vkti~ld------------- 67 (220)
T PF10858_consen 12 QNEEKRLIFFKKLLPIV-----------IIISLFAITIMVINNNNKDRQIKNNQKNGDIFVKTIGLD------------- 67 (220)
T ss_pred ccHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHccchhHHHHhhccccceeeeecccc-------------
Confidence 45667777777776652 222333333333333334444555554433333322211
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004829 569 YYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSN 648 (728)
Q Consensus 569 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 648 (728)
.-.++-+-|...++..+... +......+...+-..-...|.|.+|..++.+.++. ....+...+|..
T Consensus 68 -t~~~N~eLa~~tLEnLvt~s------nTKikEiA~leqva~kis~~~~~eaK~LlnkIi~n------k~YSeistsYaR 134 (220)
T PF10858_consen 68 -TTKNNSELAFNTLENLVTNS------NTKIKEIAALEQVAIKISEKKYSEAKQLLNKIIEN------KEYSEISTSYAR 134 (220)
T ss_pred -cccCcHHHHHHHHHHHHHcc------chHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhh------hhHHHHHHHHHH
Confidence 11355556666666644331 11212233444444555678999999999998886 234567778889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhc
Q 004829 649 LAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSN 716 (728)
Q Consensus 649 La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~ 716 (728)
++.|.....+-.--+.--++..+...-...+..|..+.+-...|..-.+.|...+|+ +.++.++..+
T Consensus 135 i~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI~kaiwdik~nm~~~ae-knL~~l~~Sn 201 (220)
T PF10858_consen 135 INWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATIIKAIWDIKNNMKNQAE-KNLKNLLASN 201 (220)
T ss_pred HHHHHheecccccChhhHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHhhc
Confidence 999888776544444444444554444556778888888777788888899999999 9999887654
No 428
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=72.30 E-value=42 Score=25.76 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004829 221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCL 269 (728)
Q Consensus 221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~ 269 (728)
.+..++..|...-..| +|++|+.+|..++..+.......+++..-..+
T Consensus 5 ~A~~l~~~Ave~d~~~-~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~i 52 (75)
T cd02677 5 QAAELIRLALEKEEEG-DYEAAFEFYRAGVDLLLKGVQGDSSPERREAV 52 (75)
T ss_pred HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 3456777788888886 99999999999999988766555555544433
No 429
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.06 E-value=1.2e+02 Score=30.80 Aligned_cols=68 Identities=15% Similarity=0.024 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc-------------------------CCCCHHHHHHHHHHHHHHHHcCCh
Q 004829 437 CSIGDAYLSLARFDEAIFSYHKALTAFKSAK-------------------------GENHPAVASVFVRLADLYHKIGKL 491 (728)
Q Consensus 437 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------~~~~~~~~~~~~~la~~~~~~g~~ 491 (728)
.+-|.+++..++|.+....+..+-..++... ++..-......+.+|.-|....++
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~ 141 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDS 141 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcch
Confidence 4457777777787777776665554444321 111223334455566666677777
Q ss_pred HHHHHHHHHHHHH
Q 004829 492 RDSKSYCENALKI 504 (728)
Q Consensus 492 ~~A~~~~~~al~~ 504 (728)
+.|+--|.++...
T Consensus 142 ~~ArVEfnRan~r 154 (449)
T COG3014 142 AKARVEFNRANER 154 (449)
T ss_pred hhhHHHHHHHHHH
Confidence 7777666666554
No 430
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=71.74 E-value=37 Score=25.40 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC-CCChHHHHHHHH
Q 004829 646 YSNLAGTYDAMGRIDDAIEILEYVVGMREEKLG-TANPDVEDEKRR 690 (728)
Q Consensus 646 ~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~p~~~~~~~~ 690 (728)
+...|.-+...|++++|+.+|.++++.+...+. ..+|.....+..
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~ 53 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQ 53 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 345566667789999999999999998776654 234444444333
No 431
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=71.69 E-value=76 Score=34.45 Aligned_cols=71 Identities=20% Similarity=0.182 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004829 601 GIALNQMGLACVQR--YTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMRE 674 (728)
Q Consensus 601 ~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~ 674 (728)
..++.+||.+-... ..-..++.+|.+|+...+..++..| .--|..+|..|++.+++.+|+..+-++..+.+
T Consensus 277 PmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~ 349 (618)
T PF05053_consen 277 PMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVIR 349 (618)
T ss_dssp HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT
T ss_pred chhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544322 2345678999999999988877544 23677899999999999999999999877653
No 432
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.48 E-value=95 Score=36.23 Aligned_cols=186 Identities=14% Similarity=0.092 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhcCCCC
Q 004829 477 VFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL--EQAVKLLNKALKIYGKTPGQ 554 (728)
Q Consensus 477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~ 554 (728)
-+..|+.+|...|++++|++.+.+..+-... ........+-.+-..+...+.. +-..++-.-.+...+.. +.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~-----~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~-gi 579 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSD-----TDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEA-GI 579 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccc-----cccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchh-he
Confidence 3677899999999999999999988774320 1112223333334444444433 34444443333322221 10
Q ss_pred C------CcHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH---HHcCCHHHHHHH-
Q 004829 555 Q------STIAG-IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLAC---VQRYTINEAADL- 623 (728)
Q Consensus 555 ~------~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~- 623 (728)
. ...+. +-.....-|.......-++.|++.++...+.....-+......| +..+. ...++-++|.+.
T Consensus 580 ~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly--~e~v~~~~~~~~kg~e~~E~~ 657 (877)
T KOG2063|consen 580 QIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLY--LEKVLEQASTDGKGEEAPETT 657 (877)
T ss_pred eeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHH--HHHHhhccCchhccccchhhh
Confidence 0 00000 11112223566777888899999888764432221111111111 12222 111233455555
Q ss_pred -HHHHHHHHHHhcCCCChhH-------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 624 -FEEARTILEKEYGPYHHDT-------LGVYSNLAGTYDAMGRIDDAIEILEYVVG 671 (728)
Q Consensus 624 -~~~al~~~~~~~~~~~~~~-------~~~~~~La~~~~~~g~~~~A~~~~~~al~ 671 (728)
.++.... .......+|.. ...|...+.++.++|+.++|+..|-..+.
T Consensus 658 ~rekl~~~-l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 658 VREKLLDF-LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHHHHHHH-hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 3333332 22222222221 34677788889999999999998876654
No 433
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=71.25 E-value=45 Score=25.67 Aligned_cols=40 Identities=23% Similarity=0.196 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHH--HcCCCChHH
Q 004829 645 VYSNLAGTYDAMGRIDDAIEILEYVVGMREE--KLGTANPDV 684 (728)
Q Consensus 645 ~~~~La~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~p~~ 684 (728)
.+...|.-+...|++++|+.+|..+++.+.. ..+..+|..
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~ 49 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSH 49 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 3445566667889999999999999999877 334334433
No 434
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.48 E-value=1.1e+02 Score=30.06 Aligned_cols=137 Identities=11% Similarity=0.054 Sum_probs=78.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC-----chhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829 271 VLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ-----DHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE 345 (728)
Q Consensus 271 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 345 (728)
.-+..++-..||..|++.++++++........ .....+......=..++..++++.+++.+.-+-.+.-+++
T Consensus 40 ~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl--- 116 (309)
T PF07163_consen 40 EAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL--- 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC---
Confidence 34555566678899999999988765221111 1112222222222356778899999988877665553332
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829 346 TDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHY 416 (728)
Q Consensus 346 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 416 (728)
.|.+.+.+. ..|.+.+++....+.-..-+.- +.+..... ....+-..+-.++.=.|.+++|.++.
T Consensus 117 -PpkIleLCI---LLysKv~Ep~amlev~~~WL~~-p~Nq~lp~-y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 117 -PPKILELCI---LLYSKVQEPAAMLEVASAWLQD-PSNQSLPE-YGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred -CHHHHHHHH---HHHHHhcCHHHHHHHHHHHHhC-cccCCchh-hHHHHHHHHHHHHhccccHHHHHHHH
Confidence 455554443 3478889988777766655532 22222111 11222334455666678888887765
No 435
>PF12854 PPR_1: PPR repeat
Probab=69.83 E-value=9.6 Score=23.87 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHh
Q 004829 266 VMCLHVLAAIHCSLGQYNEAIPVLERS 292 (728)
Q Consensus 266 ~~~~~~la~~~~~~g~~~~A~~~~~~a 292 (728)
...|..+-..|.+.|+.++|.++|++.
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 456889999999999999999999864
No 436
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=69.03 E-value=47 Score=25.54 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 603 ALNQMGLACVQRYTINEAADLFEEARTILEK 633 (728)
Q Consensus 603 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 633 (728)
.+...|.-+-..|+|++|+.+|..+++.+..
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 3444455556789999999999999998766
No 437
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=68.93 E-value=1.5e+02 Score=32.55 Aligned_cols=93 Identities=15% Similarity=0.075 Sum_probs=64.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHhcCCCChhHH
Q 004829 565 MGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEE-ARTILEKEYGPYHHDTL 643 (728)
Q Consensus 565 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~ 643 (728)
+...+...+....+.-.+..++.. ++..+.+..+||.+....|....+...+.+ +... .|...
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~--------~~~~~ 136 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEWL--------SPDNA 136 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--------CcchH
Confidence 666677778887777777777665 444567888888888777766666655554 4444 33333
Q ss_pred HHHHH------HHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 644 GVYSN------LAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 644 ~~~~~------La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
..+.. ++.....+|+..++....++++.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~ 172 (620)
T COG3914 137 EFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLL 172 (620)
T ss_pred HHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 33333 5888888899999999988888865
No 438
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=68.63 E-value=58 Score=32.41 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 004829 537 AVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQ 613 (728)
Q Consensus 537 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 613 (728)
|..+|.+|..+.|.. ...|+.||.++...|+.-.|+-+|-+++-. ..+ ...+..+|..++..
T Consensus 1 A~~~Y~~A~~l~P~~-------G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~P-f~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN-------GNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIP-FPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTB-------SHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC-------CCcccchhhhhccccchHHHHHHHHHHHhc-------CCC-cHHHHHHHHHHHHH
Confidence 678999999999887 468899999999999999999999999854 123 25677777777766
No 439
>PF12854 PPR_1: PPR repeat
Probab=68.61 E-value=9.9 Score=23.80 Aligned_cols=26 Identities=31% Similarity=0.603 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 004829 643 LGVYSNLAGTYDAMGRIDDAIEILEY 668 (728)
Q Consensus 643 ~~~~~~La~~~~~~g~~~~A~~~~~~ 668 (728)
..+|..|...|.+.|+.++|.++|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34788999999999999999999976
No 440
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=67.50 E-value=51 Score=31.65 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=65.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHhcCCCCCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHH
Q 004829 527 IYQSMNELEQAVKLLNKALKIYGKTPGQQS-----TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFG 601 (728)
Q Consensus 527 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 601 (728)
-.+..|+++.|+....-|++.....|+... .++.-...-+......|..-+. .++.....+ ...-+-++...+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l-~~~~dmpd~vrA 169 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDL-TTEWDMPDEVRA 169 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHH-HhcCCCChHHHH
Confidence 356789999999999999988665543321 2233333444455566653222 123333333 233344455667
Q ss_pred HHHHHHHHHHH---------HcCCHHHHHHHHHHHHHH
Q 004829 602 IALNQMGLACV---------QRYTINEAADLFEEARTI 630 (728)
Q Consensus 602 ~~~~~la~~~~---------~~g~~~~A~~~~~~al~~ 630 (728)
..+-.+|..++ ..++...|+.++++|+.+
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l 207 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQL 207 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHh
Confidence 78888888884 456889999999999998
No 441
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.32 E-value=1.5e+02 Score=30.11 Aligned_cols=29 Identities=3% Similarity=-0.022 Sum_probs=20.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829 355 RYVAEAHVQSLQFDEAEKICQMALDIHRE 383 (728)
Q Consensus 355 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 383 (728)
..-|.+++..++|.+....+..+-.....
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~Kq 90 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQ 90 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhh
Confidence 44577888888888887777666554443
No 442
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=66.84 E-value=41 Score=35.42 Aligned_cols=121 Identities=12% Similarity=0.056 Sum_probs=73.5
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHH
Q 004829 444 LSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLID 523 (728)
Q Consensus 444 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 523 (728)
+..|+.-.|-.-...++.. .|..+......+.+...+|.|+.|...+..+-.+.... ..+...
T Consensus 300 ~~~gd~~aas~~~~~~lr~--------~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~---------~~~~~~ 362 (831)
T PRK15180 300 LADGDIIAASQQLFAALRN--------QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT---------DSTLRC 362 (831)
T ss_pred hhccCHHHHHHHHHHHHHh--------CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC---------chHHHH
Confidence 3467777777666666665 33334445566888999999999998887776664331 123444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 524 IAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK 588 (728)
Q Consensus 524 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 588 (728)
+-.-...+|++++|.....-.+. + ......+...-+.....+|-+++|..++++.+.+
T Consensus 363 ~~r~~~~l~r~~~a~s~a~~~l~---~----eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 363 RLRSLHGLARWREALSTAEMMLS---N----EIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHhhhchhhHHHHHHHHHHHhc---c----ccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 55566778888888776554432 1 1111122222233344566777888877777665
No 443
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=66.40 E-value=34 Score=33.52 Aligned_cols=83 Identities=18% Similarity=0.172 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004829 598 ALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKL 677 (728)
Q Consensus 598 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~ 677 (728)
........++=.++...++++.|..+.++.+.+ +|....-+...|.+|.++|.+.-|+.-++..++.+
T Consensus 178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l--------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~---- 245 (269)
T COG2912 178 EILSRLLRNLKAALLRELQWELALRVAERLLDL--------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC---- 245 (269)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh--------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC----
Confidence 334566777778888999999999999999998 77776677889999999999999999999988865
Q ss_pred CCCChHHHHHHHHHHH
Q 004829 678 GTANPDVEDEKRRLAE 693 (728)
Q Consensus 678 ~~~~p~~~~~~~~La~ 693 (728)
|+.|....+...+..
T Consensus 246 -P~~~~a~~ir~~l~~ 260 (269)
T COG2912 246 -PDDPIAEMIRAQLLE 260 (269)
T ss_pred -CCchHHHHHHHHHHH
Confidence 444554444444433
No 444
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=65.85 E-value=17 Score=38.03 Aligned_cols=123 Identities=11% Similarity=0.078 Sum_probs=70.2
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004829 571 MTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLA 650 (728)
Q Consensus 571 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La 650 (728)
..|+...|-..+..++...+ . . +......+.+...+|.|+.|...+..+-.+. +..+ .+...+-
T Consensus 301 ~~gd~~aas~~~~~~lr~~~---~--~---p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~----~s~~----~~~~~~~ 364 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQ---Q--D---PVLIQLRSVIFSHLGYYEQAYQDISDVEKII----GTTD----STLRCRL 364 (831)
T ss_pred hccCHHHHHHHHHHHHHhCC---C--C---chhhHHHHHHHHHhhhHHHHHHHhhchhhhh----cCCc----hHHHHHH
Confidence 45666666655555554321 1 1 2233445778888899999988877665552 2111 2334445
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829 651 GTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ 718 (728)
Q Consensus 651 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~ 718 (728)
.-...+|++++|....+-.+. +.-+..++..--|..-..+|-++++. .+.+.++..+|.
T Consensus 365 r~~~~l~r~~~a~s~a~~~l~--------~eie~~ei~~iaa~sa~~l~~~d~~~-~~wk~~~~~~~~ 423 (831)
T PRK15180 365 RSLHGLARWREALSTAEMMLS--------NEIEDEEVLTVAAGSADALQLFDKSY-HYWKRVLLLNPE 423 (831)
T ss_pred HhhhchhhHHHHHHHHHHHhc--------cccCChhheeeecccHHHHhHHHHHH-HHHHHHhccCCh
Confidence 556677888877766554443 12222333333344455667777777 777777666654
No 445
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=65.84 E-value=16 Score=36.48 Aligned_cols=62 Identities=18% Similarity=0.164 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 004829 620 AADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE 697 (728)
Q Consensus 620 A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~ 697 (728)
|..+|.+|..+ .|.....+..||.++...|+.=.|+-+|-+++-. .+|. ..+..+|..++.+
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 68899999999 8889999999999999999999999999999863 4565 6778888888877
No 446
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=62.75 E-value=1.9e+02 Score=31.83 Aligned_cols=127 Identities=11% Similarity=0.004 Sum_probs=77.3
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHH
Q 004829 512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKS-AISKFR 590 (728)
Q Consensus 512 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~ 590 (728)
+.++....... +...+...+....+.-.+..++...+.. +.+..+|+......|..-.+...+.. +....
T Consensus 62 ~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~- 132 (620)
T COG3914 62 DVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPEN-------CPAVQNLAAALELDGLQFLALADISEIAEWLS- 132 (620)
T ss_pred CCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCccc-------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC-
Confidence 34555555555 7777778888877777777777654433 45666777777666666665555444 33321
Q ss_pred HhCCCCcHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 004829 591 TSGEKKSAL--FGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGR 658 (728)
Q Consensus 591 ~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~ 658 (728)
..+... ....++.++.....+|+..++....+++.++ .|....+...+......+-.
T Consensus 133 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~--------~p~~~~~~~~~~~~r~~~cs 191 (620)
T COG3914 133 ---PDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDL--------LPKYPRVLGALMTARQEQCS 191 (620)
T ss_pred ---cchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------hhhhhhhHhHHHHHHHHhcc
Confidence 111111 1122334788888999999999999999888 45544455555444444433
No 447
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=61.85 E-value=22 Score=22.72 Aligned_cols=28 Identities=25% Similarity=0.115 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHH--HHHH
Q 004829 352 ETCRYVAEAHVQSLQFDEAEKICQ--MALD 379 (728)
Q Consensus 352 ~~~~~la~~~~~~g~~~~A~~~~~--~al~ 379 (728)
+.+..+|..+...|++++|+..++ -+..
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ 31 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCA 31 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 456788999999999999999955 5443
No 448
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=60.52 E-value=30 Score=22.09 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH--HHHH
Q 004829 644 GVYSNLAGTYDAMGRIDDAIEILE--YVVG 671 (728)
Q Consensus 644 ~~~~~La~~~~~~g~~~~A~~~~~--~al~ 671 (728)
+.++.+|-.+..+|++++|+.+|. -+..
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ 31 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCA 31 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 356889999999999999999954 5444
No 449
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=60.39 E-value=15 Score=37.05 Aligned_cols=121 Identities=12% Similarity=0.105 Sum_probs=84.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829 564 QMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK-----------SALFGIALNQMGLACVQRYTINEAADLFEEARTILE 632 (728)
Q Consensus 564 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 632 (728)
..+...++.+++..|..-|.+++.......... ...-.....+++.+-+..+.+..|+..-..++..
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~-- 304 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD-- 304 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc--
Confidence 346667888999999998888887665211100 1111234556778888888888888877777664
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCC
Q 004829 633 KEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR 700 (728)
Q Consensus 633 ~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 700 (728)
.+....+++..+..+....++++|++.++.+... .|....+...+..+-....+
T Consensus 305 ------~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~--------~p~d~~i~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 305 ------ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK--------APNDKAIEEELENVRQKKKQ 358 (372)
T ss_pred ------ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc--------CcchHHHHHHHHHhhhHHHH
Confidence 6677789999999999999999999999999874 35555555444444443333
No 450
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=59.58 E-value=63 Score=31.06 Aligned_cols=109 Identities=11% Similarity=0.066 Sum_probs=63.9
Q ss_pred HHHcCChhHHHHHHHHhhhhhhhhcC---CchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 004829 276 HCSLGQYNEAIPVLERSVEIPVLEDG---QDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGE 352 (728)
Q Consensus 276 ~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 352 (728)
.+..|+|+.|+++..-|++.....++ ...+...+.-....+......|+.-+. .++.....+.. ...-.+.-.+.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~-~~dmpd~vrAK 170 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLTT-EWDMPDEVRAK 170 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHh-cCCCChHHHHH
Confidence 46779999999999999987532222 222333333344455555555652211 12233333321 11112333455
Q ss_pred HHHHHHHHHH---------HhCCHHHHHHHHHHHHHHHHHcCC
Q 004829 353 TCRYVAEAHV---------QSLQFDEAEKICQMALDIHRENTS 386 (728)
Q Consensus 353 ~~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~~~~ 386 (728)
.+...|..+. ..++...|+.++++|+.+.++.+.
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 6666777663 456888999999999999877664
No 451
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=58.92 E-value=51 Score=25.27 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 004829 221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEI 255 (728)
Q Consensus 221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~ 255 (728)
.+..+...|...-..| +|++|+.+|.+|+..|-.
T Consensus 5 kai~Lv~~A~~eD~~g-ny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 5 RAHFLVTQAFDEDEKG-NAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHhhHhh-hHHHHHHHHHHHHHHHHH
Confidence 3456677777777776 999999999999998866
No 452
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.79 E-value=2.1e+02 Score=29.39 Aligned_cols=110 Identities=11% Similarity=0.101 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHHcCCC
Q 004829 309 FAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMAL-DIHRENTSP 387 (728)
Q Consensus 309 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~ 387 (728)
+..+..++......+.....+....+++...... .-....++..+-.+....++|.-+..++.--+ +++..+...
T Consensus 102 ~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~----~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~ 177 (422)
T KOG2582|consen 102 FPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPS----NGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHL 177 (422)
T ss_pred HHHHHHHHHHHHhcCCccccchHHHHHHHHhccC----ccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCC
Confidence 3457778888888888888888888887765432 11334455556666777777776666554333 222222211
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 388 ASIEEAADRRLMGLICDSKGDYEAALEHYVLASMS 422 (728)
Q Consensus 388 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 422 (728)
+.......++.-|.+|....+++.|+.+|..++-.
T Consensus 178 ~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 178 DPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred CHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 11122222344467788899999999999887643
No 453
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=58.60 E-value=15 Score=21.77 Aligned_cols=27 Identities=26% Similarity=0.591 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 645 VYSNLAGTYDAMGRIDDAIEILEYVVG 671 (728)
Q Consensus 645 ~~~~La~~~~~~g~~~~A~~~~~~al~ 671 (728)
+|..+-..|.+.|++++|.+.|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 466788899999999999999998765
No 454
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=58.56 E-value=83 Score=24.27 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC-CCChHHHHHH
Q 004829 646 YSNLAGTYDAMGRIDDAIEILEYVVGMREEKLG-TANPDVEDEK 688 (728)
Q Consensus 646 ~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~p~~~~~~ 688 (728)
+...|.-+...|++++|+.+|.++++.+...+. ..++.....+
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~ 52 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNL 52 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 344556667889999999999999999877653 3344444443
No 455
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.77 E-value=4.2e+02 Score=31.88 Aligned_cols=182 Identities=13% Similarity=0.096 Sum_probs=96.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH-----------------hc-CCCChhH--HHHHHHHHHHHHHcCChhHH
Q 004829 226 LKQTREMISSGENPQKALELAKRAMKSFEIC-----------------AN-GKPSLEQ--VMCLHVLAAIHCSLGQYNEA 285 (728)
Q Consensus 226 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~-----------------~~-~~~~~~~--~~~~~~la~~~~~~g~~~~A 285 (728)
+.+|.+|...| ...+|+.+|.+|..-+-+- .+ ..+.++. ...|...-+++...+-.+.+
T Consensus 924 fmlg~~yl~tg-e~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~v 1002 (1480)
T KOG4521|consen 924 FMLGIAYLGTG-EPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEV 1002 (1480)
T ss_pred HhhheeeecCC-chHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHH
Confidence 45566677776 8999999999987532110 01 1122222 33334445555566667777
Q ss_pred HHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC
Q 004829 286 IPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSL 365 (728)
Q Consensus 286 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 365 (728)
+++...|++... ++.+ .....+..+-.-+..+|.+-+|...+-+- ++......++..+-.+++..|
T Consensus 1003 cQlA~~AIe~l~----dd~p-s~a~~~t~vFnhhldlgh~~qAy~ai~~n---------pdserrrdcLRqlvivLfecg 1068 (1480)
T KOG4521|consen 1003 CQLAVKAIENLP----DDNP-SVALISTTVFNHHLDLGHWFQAYKAILRN---------PDSERRRDCLRQLVIVLFECG 1068 (1480)
T ss_pred HHHHHHHHHhCC----Ccch-hHHHHHHHHHHhhhchhhHHHHHHHHHcC---------CcHHHHHHHHHHHHHHHHhcc
Confidence 777777776541 2222 22334555556666777777765544321 223344567788888888888
Q ss_pred CHHHHHH-----HHHHHHH-HHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHH
Q 004829 366 QFDEAEK-----ICQMALD-IHRENTSPASIEEAADRRLMGLICDSKGDYEAALEH-YVLASMS 422 (728)
Q Consensus 366 ~~~~A~~-----~~~~al~-~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~-~~~al~~ 422 (728)
.++.-.+ +-++... +............-..|..|-..+...+++.+|-.+ |+.+..+
T Consensus 1069 ~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl 1132 (1480)
T KOG4521|consen 1069 ELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRL 1132 (1480)
T ss_pred chHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Confidence 7653322 1112222 111111111122223355566667788888887654 5555443
No 456
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=56.71 E-value=62 Score=25.12 Aligned_cols=32 Identities=13% Similarity=0.044 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004829 606 QMGLACVQRYTINEAADLFEEARTILEKEYGP 637 (728)
Q Consensus 606 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 637 (728)
..|..+-..|+.++|+.+|++++..+.+...-
T Consensus 13 ~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai 44 (79)
T cd02679 13 SKALRADEWGDKEQALAHYRKGLRELEEGIAV 44 (79)
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCC
Confidence 33444455689999999999999988776543
No 457
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=56.45 E-value=1.5e+02 Score=26.57 Aligned_cols=112 Identities=12% Similarity=0.024 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcC----C--------------------------CChhHHHHHHHHH
Q 004829 224 FLLKQTREMISSGENPQKALELAKRAMKSFEICANG----K--------------------------PSLEQVMCLHVLA 273 (728)
Q Consensus 224 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~----~--------------------------~~~~~~~~~~~la 273 (728)
.....++..+..| +.++|.....+|...+...... . ............+
T Consensus 4 ~~i~~Ar~aL~~g-~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a 82 (155)
T PF10938_consen 4 RDIQKARLALFQG-DTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTA 82 (155)
T ss_dssp HHHHHHHHHHCTT--HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHH
Confidence 3456788888997 9999999999998877633110 0 0122344566778
Q ss_pred HHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004829 274 AIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLE 337 (728)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 337 (728)
.-.+..|+...|.+.++.+-.-. ......-|......-...+..+...|++.+|...+..++.
T Consensus 83 ~~~l~~g~~~~A~~~L~~~~~ei-~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 83 NELLKKGDKQAAREILKLAGSEI-DITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHTT-HHHHHHHHHHTT-EE-EEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHhcccc-eeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 88999999999999988754311 1111223344455677889999999999999999988874
No 458
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=56.17 E-value=17 Score=36.81 Aligned_cols=98 Identities=17% Similarity=0.114 Sum_probs=74.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcC-------------CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829 399 MGLICDSKGDYEAALEHYVLASMSMAANG-------------HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKS 465 (728)
Q Consensus 399 lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 465 (728)
.+.-.+..+++..|..-|.+++....... ........+.+++.+-+..+.+..|+.....++..
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~--- 304 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD--- 304 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc---
Confidence 45566778888888888888776554110 11122345667888888889999888887777764
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 466 AKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI 504 (728)
Q Consensus 466 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (728)
.+....+++..+..+....++++|++.++.+...
T Consensus 305 -----~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~ 338 (372)
T KOG0546|consen 305 -----ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK 338 (372)
T ss_pred -----ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc
Confidence 7778889999999999999999999999998776
No 459
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=56.05 E-value=15 Score=21.76 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhhh
Q 004829 269 LHVLAAIHCSLGQYNEAIPVLERSVE 294 (728)
Q Consensus 269 ~~~la~~~~~~g~~~~A~~~~~~al~ 294 (728)
|..+-..|.+.|++++|...|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 66788899999999999999998764
No 460
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=55.46 E-value=2.7e+02 Score=29.19 Aligned_cols=59 Identities=15% Similarity=0.114 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 004829 564 QMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLA--CVQRYTINEAADLFE 625 (728)
Q Consensus 564 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~ 625 (728)
..+..++..++|..|...|.+++... .... .......+..+..+ ++..-++++|.++++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~--l~~~-~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRL--LSAV-NHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcc--cChh-hhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 45567788999999999999988652 1111 11123344445444 445678999999998
No 461
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=54.32 E-value=27 Score=36.63 Aligned_cols=72 Identities=22% Similarity=0.310 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Q 004829 333 TAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICD 404 (728)
Q Consensus 333 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~ 404 (728)
-+++-+.++++|+.+|+........|-+|...|+++..++++.-|+.+..++..+-.+..+..+...+.++.
T Consensus 319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS 390 (615)
T KOG0508|consen 319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS 390 (615)
T ss_pred HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence 356777788899999998888888899999999999999999999999999888877777766666665543
No 462
>PF13041 PPR_2: PPR repeat family
Probab=54.10 E-value=43 Score=22.93 Aligned_cols=28 Identities=18% Similarity=0.431 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 644 GVYSNLAGTYDAMGRIDDAIEILEYVVG 671 (728)
Q Consensus 644 ~~~~~La~~~~~~g~~~~A~~~~~~al~ 671 (728)
.+|..+-..|.+.|++++|.++|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3678888999999999999999999886
No 463
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=53.88 E-value=1.1e+02 Score=26.48 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=34.3
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 611 CVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG 671 (728)
Q Consensus 611 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 671 (728)
+..+|+-++-.+.+....+- ....+..+..+|.+|.+.|+..+|-+++.+|.+
T Consensus 96 lv~~~kkDqLdki~~~l~kn--------~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 96 LVKQGKKDQLDKIYNELKKN--------EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHTT-HHHHHHHHHHH-------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHhhc--------cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34556655555555544321 223455789999999999999999999999987
No 464
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=53.71 E-value=98 Score=23.63 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004829 647 SNLAGTYDAMGRIDDAIEILEYVVGMREEKLG 678 (728)
Q Consensus 647 ~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~ 678 (728)
...|.-+...|++++|+.+|.++++.+...+.
T Consensus 12 i~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~ 43 (77)
T smart00745 12 ISKALKADEAGDYEEALELYKKAIEYLLEGIK 43 (77)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 33445556689999999999999999877664
No 465
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=53.24 E-value=27 Score=21.16 Aligned_cols=27 Identities=22% Similarity=0.514 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 645 VYSNLAGTYDAMGRIDDAIEILEYVVG 671 (728)
Q Consensus 645 ~~~~La~~~~~~g~~~~A~~~~~~al~ 671 (728)
+|..+-..|.+.|++++|.++|.+...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356777889999999999999998765
No 466
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.17 E-value=4.1e+02 Score=30.30 Aligned_cols=280 Identities=8% Similarity=-0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCch
Q 004829 225 LLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDH 304 (728)
Q Consensus 225 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 304 (728)
+...|...+..| +++-|+.+.+.- |.... .-..++++++++.|+.-.-+.-.......---+
T Consensus 510 y~~iA~~Ay~~G-R~~LA~kLle~E-------------~~~~~----qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllh 571 (829)
T KOG2280|consen 510 YAAIARRAYQEG-RFELARKLLELE-------------PRSGE----QVPLLLKMKDSSLALKKAIESGDTDLIIQVLLH 571 (829)
T ss_pred HHHHHHHHHhcC-cHHHHHHHHhcC-------------CCccc----hhHHHhccchHHHHHHHHHhcCCchhHHHHHHH
Q ss_pred hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 004829 305 ALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHREN 384 (728)
Q Consensus 305 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 384 (728)
... ....+..+....++.-|..+|.+..+. .-...+...|....++..+-.+..+..-.....
T Consensus 572 lk~----~~~~s~l~~~l~~~p~a~~lY~~~~r~-------------~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~ 634 (829)
T KOG2280|consen 572 LKN----KLNRSSLFMTLRNQPLALSLYRQFMRH-------------QDRATLYDFYNQDDNHQALASFHLQASYAAETI 634 (829)
T ss_pred HHH----HHHHHHHHHHHHhchhhhHHHHHHHHh-------------hchhhhhhhhhcccchhhhhhhhhhhhhhhhhh
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHH------HHHHHHHHHHHhCCHHHHHHHHHH
Q 004829 385 TSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVAS------IDCSIGDAYLSLARFDEAIFSYHK 458 (728)
Q Consensus 385 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~ 458 (728)
...... +...+..+.+.....-..+.++.-.++......-..... ....--.-+...|+..+|.+.-.+
T Consensus 635 ~~r~~~-----lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~ 709 (829)
T KOG2280|consen 635 EGRIPA-----LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSD 709 (829)
T ss_pred cccchh-----HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHh
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 004829 459 ALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAV 538 (728)
Q Consensus 459 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 538 (728)
. ....-..|......+...+++++-.++.+ ....+..|.=...++.+.|+.++|.
T Consensus 710 F-----------kipdKr~~wLk~~aLa~~~kweeLekfAk--------------skksPIGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 710 F-----------KIPDKRLWWLKLTALADIKKWEELEKFAK--------------SKKSPIGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred c-----------CCcchhhHHHHHHHHHhhhhHHHHHHHHh--------------ccCCCCCchhHHHHHHhcccHHHHh
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829 539 KLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKS 584 (728)
Q Consensus 539 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 584 (728)
+|+-++-.+ .....+|...|++.+|.+..-+
T Consensus 765 KYiprv~~l---------------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 765 KYIPRVGGL---------------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hhhhccCCh---------------HHHHHHHHHhccHHHHHHHHHH
No 467
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=51.88 E-value=2.7e+02 Score=28.12 Aligned_cols=178 Identities=11% Similarity=-0.002 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004829 471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSE-EIASGLIDIAAIYQSMNELEQAVKLLNKALKIYG 549 (728)
Q Consensus 471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 549 (728)
.|....+++..|...+..|+|..|-.++-....+... ..+ .....|..+|. -.-..+++.|++-+.+..+...
T Consensus 125 ~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~-----~d~n~lsalwGKlAS-EIL~qnWd~A~edL~rLre~ID 198 (432)
T KOG2758|consen 125 TPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSD-----PDRNYLSALWGKLAS-EILTQNWDGALEDLTRLREYID 198 (432)
T ss_pred CHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCC-----cchhhHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHc
Confidence 7888999999999999999999999988777666533 233 33344444443 3445689999999988887766
Q ss_pred cCCCCCCcHHHHHHHHH----HHHHHcCCHHHH----HHH------HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc-
Q 004829 550 KTPGQQSTIAGIEAQMG----VMYYMTGNYSDS----YNT------LKSAISKFRTSGEKKSALFGIALNQMGLACVQR- 614 (728)
Q Consensus 550 ~~~~~~~~~~~~~~~la----~~~~~~g~~~~A----~~~------~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~- 614 (728)
..+-..+ +..+.... +.++-.=++.++ ++. |-.|++. ..+..+..|+.+..-.
T Consensus 199 s~~f~~~--~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt----------~cPhllRYLatAvvtnk 266 (432)
T KOG2758|consen 199 SKSFSTS--AQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQT----------SCPHLLRYLATAVVTNK 266 (432)
T ss_pred ccccccH--HHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHh----------hCHHHHHHHHHHhhcch
Confidence 5422221 11111111 111111122222 221 1122222 1234556666655544
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 615 YTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 615 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
.....+++-+-++++.-.- .-.+|- ...-.|++-.-+++.|...++++-++.
T Consensus 267 ~~rr~~lkdlvkVIqqE~y--sYkDPi-----teFl~clyvn~DFdgAq~kl~eCeeVl 318 (432)
T KOG2758|consen 267 RRRRNRLKDLVKVIQQESY--SYKDPI-----TEFLECLYVNYDFDGAQKKLRECEEVL 318 (432)
T ss_pred HhhHHHHHHHHHHHHHhcc--ccCCcH-----HHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 4555566666555554211 112332 223345556678999999888886654
No 468
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.88 E-value=3.1e+02 Score=32.19 Aligned_cols=182 Identities=15% Similarity=0.041 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHcCCC--
Q 004829 312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQF--DEAEKICQMALDIHRENTSP-- 387 (728)
Q Consensus 312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~-- 387 (728)
+..|+..|...|++++|++.+.+...-... .+......+-.+-..+...+.- +-..++-.-.++..+..+-.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~----~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~If 582 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSD----TDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIF 582 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccc----cccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeee
Confidence 678889999999999999999887763210 1222223333333333333332 33333333333322221110
Q ss_pred --CcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH--------hCCHHHHHHH-
Q 004829 388 --ASI-EEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLS--------LARFDEAIFS- 455 (728)
Q Consensus 388 --~~~-~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~- 455 (728)
... .....-...-.-|.......-++.|++.++......+. ..+..++..|.. .++-+++.+.
T Consensus 583 t~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~-----~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~ 657 (877)
T KOG2063|consen 583 TSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTST-----LLHTVLLKLYLEKVLEQASTDGKGEEAPETT 657 (877)
T ss_pred eccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccch-----HHHHHHHHHHHHHHhhccCchhccccchhhh
Confidence 000 00000111222345566777788888877654332221 122222222222 2233355555
Q ss_pred -HHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 456 -YHKALTAFKSAKGENHPA-------VASVFVRLADLYHKIGKLRDSKSYCENALK 503 (728)
Q Consensus 456 -~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (728)
.++.+...+.. ...+|. ....|...+.++.++|+.++|+..|-..+.
T Consensus 658 ~rekl~~~l~~s-~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 658 VREKLLDFLESS-DLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHHHHHHHhhhh-cccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 33333332221 111221 145667778888889999999888876554
No 469
>PF13041 PPR_2: PPR repeat family
Probab=50.83 E-value=46 Score=22.77 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829 434 SIDCSIGDAYLSLARFDEAIFSYHKALTA 462 (728)
Q Consensus 434 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 462 (728)
.+|..+-..|.+.|++++|.++|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 46777888889999999999999888764
No 470
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=50.55 E-value=5.3e+02 Score=31.18 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 605 NQMGLACVQRYTINEAADLFEEART 629 (728)
Q Consensus 605 ~~la~~~~~~g~~~~A~~~~~~al~ 629 (728)
..|+.-+..++++-+|.......+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 4555666667777777666665544
No 471
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=50.11 E-value=1.3e+02 Score=25.82 Aligned_cols=79 Identities=10% Similarity=0.103 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCC
Q 004829 495 KSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGN 574 (728)
Q Consensus 495 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 574 (728)
..+++++++.+.....-.+++....+|...+... ++ +...|.-.... +.-...+..|...|..+...|+
T Consensus 46 ~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---~d---p~~if~~L~~~-----~IG~~~AlfYe~~A~~lE~~g~ 114 (125)
T smart00777 46 LTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---DE---PRELFQFLYSK-----GIGTKLALFYEEWAQLLEAAGR 114 (125)
T ss_pred HHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---CC---HHHHHHHHHHC-----CcchhhHHHHHHHHHHHHHcCC
Confidence 4455555555443222234666777777777653 33 34444433221 3334556778888999999999
Q ss_pred HHHHHHHHHH
Q 004829 575 YSDSYNTLKS 584 (728)
Q Consensus 575 ~~~A~~~~~~ 584 (728)
+.+|...|+.
T Consensus 115 ~~~A~~iy~~ 124 (125)
T smart00777 115 YKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHc
Confidence 9999988864
No 472
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=49.58 E-value=2.9e+02 Score=27.90 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=66.7
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 004829 320 AMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLM 399 (728)
Q Consensus 320 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l 399 (728)
.+..+..+-++....++++ +|+.+.+|..|+.-- .--..+|..+++++++...... ..
T Consensus 195 WRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~y------------r~ 252 (556)
T KOG3807|consen 195 WRERNPPARIKAAYQALEI--------NNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIY------------RQ 252 (556)
T ss_pred HHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHH------------hh
Confidence 3445566667777788888 788888888887532 3346778888888887654321 11
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829 400 GLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTA 462 (728)
Q Consensus 400 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 462 (728)
.......|...+|.. ..+......+-..++.|..++|+..+|++.++...+-
T Consensus 253 sqq~qh~~~~~da~~-----------rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke 304 (556)
T KOG3807|consen 253 SQQCQHQSPQHEAQL-----------RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKE 304 (556)
T ss_pred HHHHhhhccchhhhh-----------hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 111111222222211 1122334455677888888899998888888776543
No 473
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=49.48 E-value=35 Score=20.60 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 603 ALNQMGLACVQRYTINEAADLFEEART 629 (728)
Q Consensus 603 ~~~~la~~~~~~g~~~~A~~~~~~al~ 629 (728)
+|+.+-..|.+.|++++|..+|.+...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356677889999999999999998754
No 474
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=49.42 E-value=3.8e+02 Score=29.10 Aligned_cols=166 Identities=10% Similarity=0.009 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcH
Q 004829 436 DCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSE 515 (728)
Q Consensus 436 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 515 (728)
+..+-.++...-.+.-....+.+.+.+. ..-.++..++.+|... ..++-....++..+.. .
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~---------e~kmal~el~q~y~en-~n~~l~~lWer~ve~d---------f 129 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG---------ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD---------F 129 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc---------chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc---------c
Confidence 3344445555556666677788888762 2345788899999888 5566677777777762 2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004829 516 EIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEK 595 (728)
Q Consensus 516 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 595 (728)
+....-..|+..|.. ++...+..+|.+++..+-.. .....+-.+|..+-.. --.+.+.-+.. ...+-...+..
T Consensus 130 nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~-~q~~~i~evWeKL~~~--i~dD~D~fl~l---~~kiqt~lg~~ 202 (711)
T COG1747 130 NDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPR-RQNAAIKEVWEKLPEL--IGDDKDFFLRL---QKKIQTKLGEG 202 (711)
T ss_pred hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcch-hhhhhHHHHHHHHHHh--ccccHHHHHHH---HHHHHHhhccc
Confidence 233444566776666 88899999999998765432 1122222233222211 11222222222 22222222221
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 596 KSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 596 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
. ...++..+-.-|....++++|++.+...++.
T Consensus 203 ~---~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 203 R---GSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred h---HHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 1 1123333335566677899999988876665
No 475
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=49.39 E-value=1.5e+02 Score=26.61 Aligned_cols=109 Identities=16% Similarity=0.039 Sum_probs=66.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC------C------------------------C--CCcHHHHHHHHHHH
Q 004829 521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTP------G------------------------Q--QSTIAGIEAQMGVM 568 (728)
Q Consensus 521 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~------------------------~--~~~~~~~~~~la~~ 568 (728)
....+......|+.++|...+.++...+.... . . ...........+.-
T Consensus 5 ~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~ 84 (155)
T PF10938_consen 5 DIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANE 84 (155)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHH
Confidence 34567778889999999999998876654220 0 0 01122334566777
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 569 YYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEART 629 (728)
Q Consensus 569 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 629 (728)
.+..|+...|.+.++.+-.-..-.-..-+..........+..+...|++.+|...+..++.
T Consensus 85 ~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 85 LLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8899999999887776522100000000122234455678889999999999999998875
No 476
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=48.60 E-value=2.8e+02 Score=27.29 Aligned_cols=120 Identities=9% Similarity=-0.022 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 004829 407 GDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSL-ARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLY 485 (728)
Q Consensus 407 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 485 (728)
..-..|+.+...++.+ .|..-.+|...-.++..+ .+..+-++++.+.++- .|..-.++...-.+.
T Consensus 57 E~S~RAl~LT~d~i~l------NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~--------npKNYQvWHHRr~iv 122 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRL------NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIED--------NPKNYQVWHHRRVIV 122 (318)
T ss_pred ccCHHHHHHHHHHHHh------CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--------CccchhHHHHHHHHH
Confidence 3445666666666654 344444444444444433 3566667777776664 778888888888888
Q ss_pred HHcCChH-HHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004829 486 HKIGKLR-DSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYG 549 (728)
Q Consensus 486 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 549 (728)
...|++. .-+++.+.++....+ .-.+|...-.+...-+.++.-+.+..+.++...
T Consensus 123 e~l~d~s~rELef~~~~l~~DaK---------NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di 178 (318)
T KOG0530|consen 123 ELLGDPSFRELEFTKLMLDDDAK---------NYHAWSHRQWVLRFFKDYEDELAYADELLEEDI 178 (318)
T ss_pred HHhcCcccchHHHHHHHHhcccc---------chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 8889887 778888888876333 334566666777777889998888888877643
No 477
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=48.37 E-value=44 Score=20.24 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 645 VYSNLAGTYDAMGRIDDAIEILEYVVG 671 (728)
Q Consensus 645 ~~~~La~~~~~~g~~~~A~~~~~~al~ 671 (728)
.|..+..++.+.|+++.|..+|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567788899999999999999988765
No 478
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=48.06 E-value=1.2e+02 Score=23.10 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC-CCChHHHHHHH
Q 004829 647 SNLAGTYDAMGRIDDAIEILEYVVGMREEKLG-TANPDVEDEKR 689 (728)
Q Consensus 647 ~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~p~~~~~~~ 689 (728)
...|.-....|++++|+.+|.++++.+..... ..+|.....+.
T Consensus 10 ~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~ 53 (75)
T cd02678 10 VKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIR 53 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 33445556789999999999999998877653 34454444433
No 479
>PRK12798 chemotaxis protein; Reviewed
Probab=47.51 E-value=3.7e+02 Score=28.42 Aligned_cols=185 Identities=13% Similarity=-0.023 Sum_probs=90.7
Q ss_pred HHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHH
Q 004829 272 LAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGD-TYAMLGQIENSILCYTAGLEIQRQVLGETDHRV 350 (728)
Q Consensus 272 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 350 (728)
-|..-+-.|+-.+|.+.+..+-... ....+..+..|.. ......+...|+.+|..+--+.+-. --.
T Consensus 118 ~g~laY~~Gr~~~a~~~La~i~~~~--------l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGT-----LvE 184 (421)
T PRK12798 118 DGALAYLSGRGREARKLLAGVAPEY--------LPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGT-----LVE 184 (421)
T ss_pred HHHHHHHcCCHHHHHHHhhcCChhh--------cCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCch-----HHH
Confidence 3455556677777777776654322 0111222333322 2334457777777777776552110 001
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCh
Q 004829 351 GETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHEL 430 (728)
Q Consensus 351 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 430 (728)
-.++..--.+..+.|+.+++..+-.+.+..+...... ...+..+.......++-.. ...+...+.. -+..
T Consensus 185 EAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA-----~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~----~d~~ 254 (421)
T PRK12798 185 EAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYA-----SQFAQRFVDLVVRLDDEIR-DARLVEILSF----MDPE 254 (421)
T ss_pred HHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchH-----HHHHHHHHHHHHhcccccc-HHHHHHHHHh----cCch
Confidence 1134444444566777777777777666665544322 1222223333332221111 1112222221 1233
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004829 431 DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRL 481 (728)
Q Consensus 431 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 481 (728)
....+|..++..-...|+.+-|...-.+++.+... +......+..|...
T Consensus 255 ~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~--~~~~~~ra~LY~aa 303 (421)
T PRK12798 255 RQRELYLRIARAALIDGKTELARFASERALKLADP--DSADAARARLYRGA 303 (421)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC--CCcchHHHHHHHHH
Confidence 44556777777777777777777777777776633 23344444444443
No 480
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=47.36 E-value=1.2e+02 Score=23.54 Aligned_cols=35 Identities=17% Similarity=0.061 Sum_probs=26.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004829 647 SNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTAN 681 (728)
Q Consensus 647 ~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 681 (728)
...|..+...|+.++|+.+|++++....+-+.-..
T Consensus 12 I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~ 46 (79)
T cd02679 12 ISKALRADEWGDKEQALAHYRKGLRELEEGIAVPV 46 (79)
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444555669999999999999999887766433
No 481
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=47.33 E-value=4.1e+02 Score=28.87 Aligned_cols=169 Identities=14% Similarity=0.011 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829 266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE 345 (728)
Q Consensus 266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 345 (728)
-.++..+-.++...-.+.-...++.+++...+ ... +++.++.+|... ..++-...+++.++.
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e------~km----al~el~q~y~en-~n~~l~~lWer~ve~------- 127 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE------SKM----ALLELLQCYKEN-GNEQLYSLWERLVEY------- 127 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhcc------hHH----HHHHHHHHHHhc-CchhhHHHHHHHHHh-------
Confidence 34555555666555566666777888876631 111 388999999887 556677788887777
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 004829 346 TDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAA 425 (728)
Q Consensus 346 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 425 (728)
+-+....-..|+..|.+ ++...+..+|.+++...-.... ....-.+|..+- ..--.+.+.-+....+ +...
T Consensus 128 -dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q--~~~i~evWeKL~--~~i~dD~D~fl~l~~k---iqt~ 198 (711)
T COG1747 128 -DFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQ--NAAIKEVWEKLP--ELIGDDKDFFLRLQKK---IQTK 198 (711)
T ss_pred -cchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhh--hhhHHHHHHHHH--HhccccHHHHHHHHHH---HHHh
Confidence 44455555667776665 8889999999999865422110 011111122211 1112233333332222 1111
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829 426 NGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTA 462 (728)
Q Consensus 426 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 462 (728)
.+. .....++..+-.-|....++++|++.+...++.
T Consensus 199 lg~-~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 199 LGE-GRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred hcc-chHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 111 111222333334566678899999888876665
No 482
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.12 E-value=5.4e+02 Score=29.99 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=45.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829 398 LMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKS 465 (728)
Q Consensus 398 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 465 (728)
.+-.+|...|+|+.|+++.... +...-.++...|..++..++|..|.++|-+.++-+++
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~---------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEE 421 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTR---------PDALETVLLKQADFLFQDKEYLRAAEIYAETLSSFEE 421 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCC---------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHH
Confidence 3556889999999998875432 2344567888999999999999999999887665443
No 483
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=45.76 E-value=3.8e+02 Score=28.11 Aligned_cols=58 Identities=16% Similarity=0.053 Sum_probs=38.4
Q ss_pred HHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHH--HHhCCHHHHHHHHH
Q 004829 272 LAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTY--AMLGQIENSILCYT 333 (728)
Q Consensus 272 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~ 333 (728)
.+..++..++|..|...|.+++..... +... ..+..+..+..+| +..-++++|..+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~--~~~~--~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLS--AVNH--TFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccC--hhhh--hHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 455778899999999999998865311 1111 1233444554444 55678899999988
No 484
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=45.46 E-value=3.2e+02 Score=27.14 Aligned_cols=140 Identities=12% Similarity=0.120 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH-----HHHHHHHHH-HHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829 435 IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP-----AVASVFVRL-ADLYHKIGKLRDSKSYCENALKIYGKP 508 (728)
Q Consensus 435 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~ 508 (728)
.+-.-+..+.-.-||..|++.++++++..........+ ..-..+..+ .+++..++++.+++...-+-.+.-+++
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl 116 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC
Confidence 34445566667788999999999998876332111111 111222222 246778899999887766554443332
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829 509 NHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLK 583 (728)
Q Consensus 509 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 583 (728)
++. ++..-..+|.+.+++....+.-..-+.. +.+.+....-..+-..+-.++.=+|.+++|.++..
T Consensus 117 -----Ppk---IleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 117 -----PPK---ILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred -----CHH---HHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 333 3333445788899988777665554432 11112122222223345566677899999988874
No 485
>PRK12798 chemotaxis protein; Reviewed
Probab=45.15 E-value=4e+02 Score=28.17 Aligned_cols=205 Identities=15% Similarity=0.030 Sum_probs=125.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829 312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE 391 (728)
Q Consensus 312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 391 (728)
-..-|..-+..|+-.+|...+........ ++...-......-......+...|+.+|+.+.-..|.. +.
T Consensus 115 ~L~~g~laY~~Gr~~~a~~~La~i~~~~l------~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGT-----Lv 183 (421)
T PRK12798 115 RLADGALAYLSGRGREARKLLAGVAPEYL------PAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGT-----LV 183 (421)
T ss_pred HHHHHHHHHHcCCHHHHHHHhhcCChhhc------CchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCch-----HH
Confidence 44556666778999999988876544321 23333333333334556678999999999987655432 22
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829 392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH 471 (728)
Q Consensus 392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 471 (728)
.-.++..-..+....|+.+++..+-.+-+..+ ...+.....+..++..+...++-.. ...+...+.. -+.
T Consensus 184 EEAALRRsi~la~~~g~~~rf~~la~~Y~rRF---~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~------~d~ 253 (421)
T PRK12798 184 EEAALRRSLFIAAQLGDADKFEALARNYLRRF---RHSPYASQFAQRFVDLVVRLDDEIR-DARLVEILSF------MDP 253 (421)
T ss_pred HHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcccccc-HHHHHHHHHh------cCc
Confidence 22345555567788999999888766555444 3345444555555555555442221 1224444443 135
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829 472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLN 542 (728)
Q Consensus 472 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 542 (728)
+.....|..++..-...|+.+-|.-.-++++.+... + ......+...-+....-..++++|+..+.
T Consensus 254 ~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~---~--~~~~~ra~LY~aaa~v~s~~~~~al~~L~ 319 (421)
T PRK12798 254 ERQRELYLRIARAALIDGKTELARFASERALKLADP---D--SADAARARLYRGAALVASDDAESALEELS 319 (421)
T ss_pred hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC---C--CcchHHHHHHHHHHccCcccHHHHHHHHh
Confidence 556778999999999999999999999999999743 1 22233333333444444555666665554
No 486
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=45.15 E-value=54 Score=19.78 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 603 ALNQMGLACVQRYTINEAADLFEEART 629 (728)
Q Consensus 603 ~~~~la~~~~~~g~~~~A~~~~~~al~ 629 (728)
.|..+-.++.+.|+++.|..+|....+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567778899999999999999988665
No 487
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=44.74 E-value=1.3e+02 Score=29.57 Aligned_cols=69 Identities=10% Similarity=0.051 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829 431 DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK 507 (728)
Q Consensus 431 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (728)
.......++=..+...++++.|..+.++.+.+ .|..+.-....|.+|.++|.+.-|+..+...++.+..
T Consensus 179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l--------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 179 ILSRLLRNLKAALLRELQWELALRVAERLLDL--------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh--------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 34556677778899999999999999999998 7777777888999999999999999999998887533
No 488
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=44.16 E-value=1.7e+02 Score=34.09 Aligned_cols=97 Identities=10% Similarity=-0.021 Sum_probs=51.9
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 004829 531 MNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLA 610 (728)
Q Consensus 531 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 610 (728)
.+++..|+-.+..++-.....+........-...-+..+-..|....|+.+|.+++..+....-. ......++.++..
T Consensus 288 e~dl~~allleqaal~f~~tkp~m~~ktffHpVLal~r~s~anqp~ha~R~y~~ai~v~~~~~ws--~~edh~~f~i~~~ 365 (960)
T KOG1938|consen 288 EGDLLSALLLEQAALCFGSTKPPMPRKTFFHPVLALIRFSSANQPKHALRCYRQAIPVLKKPTWS--FAEDHLYFTILHV 365 (960)
T ss_pred CchhhhHHHHHHHHHHhhcCCCCccchhhcceeehhhhcccCCChhHHHHHHHHHhhhcCCCCcc--hhHHhHHHhHHHh
Confidence 44566666666666655533322222111111223556677788999999999999876543221 1112345555664
Q ss_pred HHHcCCHHHHHHHHHHHHHH
Q 004829 611 CVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 611 ~~~~g~~~~A~~~~~~al~~ 630 (728)
|.- -..+.|-..+.+.+..
T Consensus 366 y~l-~~~D~a~~~f~~~i~~ 384 (960)
T KOG1938|consen 366 YLL-CQEDDADEEFSKLIAD 384 (960)
T ss_pred hhh-hcchhHHHHHHHHHhh
Confidence 433 2345555555555544
No 489
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=43.98 E-value=2.4e+02 Score=25.33 Aligned_cols=130 Identities=14% Similarity=0.075 Sum_probs=82.9
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 004829 489 GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVM 568 (728)
Q Consensus 489 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 568 (728)
++-+-|...++..+.... ..-.-.+...+...-...|.|.+|..++.+.++. ........+|..+++|
T Consensus 71 ~N~eLa~~tLEnLvt~sn-------TKikEiA~leqva~kis~~~~~eaK~LlnkIi~n-----k~YSeistsYaRi~wc 138 (220)
T PF10858_consen 71 NNSELAFNTLENLVTNSN-------TKIKEIAALEQVAIKISEKKYSEAKQLLNKIIEN-----KEYSEISTSYARINWC 138 (220)
T ss_pred CcHHHHHHHHHHHHHccc-------hHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhh-----hhHHHHHHHHHHHHHH
Confidence 445556666666444321 1112223444445566778999999999998876 3334566778888888
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 569 YYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 569 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
.....+-.--++.-.+..+.+.-..++..|+.+.+-...+..-...|+..+|+..++..+.-
T Consensus 139 ~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI~kaiwdik~nm~~~aeknL~~l~~S 200 (220)
T PF10858_consen 139 CMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATIIKAIWDIKNNMKNQAEKNLKNLLAS 200 (220)
T ss_pred HheecccccChhhHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 87665544334444444444444455556767777777777777889999999999887764
No 490
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=43.66 E-value=3.8e+02 Score=27.46 Aligned_cols=75 Identities=11% Similarity=0.034 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004829 602 IALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTAN 681 (728)
Q Consensus 602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 681 (728)
..|...-.++...++|++=..+... ...| ..|.-...++...|+..+|..|..++ .
T Consensus 209 rfw~lki~aLa~~~~w~eL~~fa~s----------kKsP---IGyepFv~~~~~~~~~~eA~~yI~k~-~---------- 264 (319)
T PF04840_consen 209 RFWWLKIKALAENKDWDELEKFAKS----------KKSP---IGYEPFVEACLKYGNKKEASKYIPKI-P---------- 264 (319)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhC----------CCCC---CChHHHHHHHHHCCCHHHHHHHHHhC-C----------
Confidence 4555666777888888765543221 0122 24455666777788888888877762 1
Q ss_pred hHHHHHHHHHHHHHHHhCChhHHHH
Q 004829 682 PDVEDEKRRLAELLKEAGRVRNRKS 706 (728)
Q Consensus 682 p~~~~~~~~La~~~~~~g~~~~A~~ 706 (728)
. ......|.+.|++.+|..
T Consensus 265 -~-----~~rv~~y~~~~~~~~A~~ 283 (319)
T PF04840_consen 265 -D-----EERVEMYLKCGDYKEAAQ 283 (319)
T ss_pred -h-----HHHHHHHHHCCCHHHHHH
Confidence 1 123456778888888774
No 491
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=43.57 E-value=1.3e+02 Score=23.02 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=18.2
Q ss_pred HHcCChhHHHHHHHHhhhhhhh
Q 004829 277 CSLGQYNEAIPVLERSVEIPVL 298 (728)
Q Consensus 277 ~~~g~~~~A~~~~~~al~~~~~ 298 (728)
-..|+|++|+.+|.++++.+..
T Consensus 17 D~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 17 DEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred hHhhhHHHHHHHHHHHHHHHHH
Confidence 3458999999999999988743
No 492
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=42.17 E-value=1.5e+02 Score=22.48 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=25.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004829 647 SNLAGTYDAMGRIDDAIEILEYVVGMREEKLG 678 (728)
Q Consensus 647 ~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~ 678 (728)
...|.-....|++++|+.+|..+++.+...+.
T Consensus 10 ~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~ 41 (75)
T cd02656 10 IKQAVKEDEDGNYEEALELYKEALDYLLQALK 41 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 33445556679999999999999998877664
No 493
>PRK09169 hypothetical protein; Validated
Probab=41.31 E-value=9.8e+02 Score=31.60 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=18.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHH
Q 004829 648 NLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDV 684 (728)
Q Consensus 648 ~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~ 684 (728)
.++..+..+.++.+.-.+-+-++.+....-...+|.-
T Consensus 752 ~lAnsLNaLsKwp~~~~c~~a~~~La~~lg~~~~p~~ 788 (2316)
T PRK09169 752 GLANSLNALSKWPQEPACQQAALLLAERLGSAGLPFR 788 (2316)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCchh
Confidence 3445555555555544555555555555444444443
No 494
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=39.43 E-value=48 Score=32.10 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=52.2
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829 406 KGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKS 465 (728)
Q Consensus 406 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 465 (728)
.-....|.+++..|+..+...++...+..+.+..+..|+...+|+.|..+|..|+.++..
T Consensus 52 ~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 52 DATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred ccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 345678999999999999888888888888888899999999999999999999998554
No 495
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=39.06 E-value=3.3e+02 Score=25.41 Aligned_cols=108 Identities=15% Similarity=0.059 Sum_probs=53.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HhcCCCh
Q 004829 355 RYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSM----AANGHEL 430 (728)
Q Consensus 355 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~ 430 (728)
...+......|++++|...++++.+........ +.....++.-|.+-..+..|-+|..+|.-...-. ...+-++
T Consensus 33 s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~--l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~ 110 (204)
T COG2178 33 SGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRL--LAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPP 110 (204)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCH
Confidence 344555667889999999999888766544210 0000112233334334445555555543221100 0001111
Q ss_pred hHHHHHHHH----------HHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004829 431 DVASIDCSI----------GDAYLSLARFDEAIFSYHKALTAFKSA 466 (728)
Q Consensus 431 ~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~al~~~~~~ 466 (728)
......+ .......|+++.|..++.-.-.++...
T Consensus 111 --~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~L 154 (204)
T COG2178 111 --IAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEEL 154 (204)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 1112222 233456788888888777666665444
No 496
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=38.75 E-value=1.3e+03 Score=32.16 Aligned_cols=36 Identities=8% Similarity=0.194 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004829 641 DTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK 676 (728)
Q Consensus 641 ~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~ 676 (728)
..++.+..-|....+.|+.++|-..|..|+++....
T Consensus 2810 q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l 2845 (3550)
T KOG0889|consen 2810 QKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGL 2845 (3550)
T ss_pred HHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhh
Confidence 445667778999999999999999999999987543
No 497
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=35.17 E-value=4.5e+02 Score=25.90 Aligned_cols=174 Identities=10% Similarity=0.054 Sum_probs=108.3
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHcCCCCCCCcHHHHHH
Q 004829 442 AYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIG-KLRDSKSYCENALKIYGKPNHGIPSEEIASG 520 (728)
Q Consensus 442 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 520 (728)
++....+-..|+.+...++.+ .|..-.++...-.++..++ +..+-++++...+.-. +..-.+
T Consensus 52 I~~~~E~S~RAl~LT~d~i~l--------NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n---------pKNYQv 114 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRL--------NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN---------PKNYQV 114 (318)
T ss_pred HHhccccCHHHHHHHHHHHHh--------CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---------ccchhH
Confidence 344556667888888888888 7777666666666665544 5667777887776663 334566
Q ss_pred HHHHHHHHHHcCCHH-HHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHH
Q 004829 521 LIDIAAIYQSMNELE-QAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSAL 599 (728)
Q Consensus 521 ~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 599 (728)
|...-.+....|++. .-+++...++....+. ..++...-.+...-+.|+.-+.+..+.++.-..
T Consensus 115 WHHRr~ive~l~d~s~rELef~~~~l~~DaKN-------YHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-------- 179 (318)
T KOG0530|consen 115 WHHRRVIVELLGDPSFRELEFTKLMLDDDAKN-------YHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-------- 179 (318)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHhccccc-------hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--------
Confidence 777777777788877 6677777777643333 235556667777778899988888888765111
Q ss_pred HHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004829 600 FGIALNQMGLACVQ-RY-----TINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA 655 (728)
Q Consensus 600 ~~~~~~~la~~~~~-~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~ 655 (728)
.-.+++..--+... .| ..+.-+.+..+.+.+ .|....++..|..++..
T Consensus 180 NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~--------vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 180 NNSAWNQRYFVITNTKGVISKAELERELNYTKDKILL--------VPNNESAWNYLKGLLEL 233 (318)
T ss_pred ccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHh
Confidence 11122211111111 11 123334455555555 66777788888888875
No 498
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=33.94 E-value=5.5e+02 Score=26.51 Aligned_cols=118 Identities=15% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHHHc------------CCCChHHHHHHHHHHHHHHHhC
Q 004829 308 KFAGCMQLGDTYAMLGQ----------IENSILCYTAGLEIQRQVL------------GETDHRVGETCRYVAEAHVQSL 365 (728)
Q Consensus 308 ~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~------------~~~~~~~~~~~~~la~~~~~~g 365 (728)
.+.+++++|.+|..++. ...|..+|++|.-.+.-+. .+-++....++..+.....+.-
T Consensus 110 ~~~vLfn~aa~~s~~a~~~~~~~~~~~~k~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~Dl~~~~l~~l~~l~LAqAQe~ 189 (345)
T cd09034 110 LLSILFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGYFEYLKEHVLPLPPDELPVDLTEAVLSALSLIMLAQAQEC 189 (345)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccCCHHHHHHHHHHHHHHHHHH
Q ss_pred CHHHHH------------------HHHHHHHHHHHHcCCC----------------CcHHHHHHHHHHHHHHHHcCCHHH
Q 004829 366 QFDEAE------------------KICQMALDIHRENTSP----------------ASIEEAADRRLMGLICDSKGDYEA 411 (728)
Q Consensus 366 ~~~~A~------------------~~~~~al~~~~~~~~~----------------~~~~~a~~~~~lg~~~~~~g~~~~ 411 (728)
-+.+|+ .+|+.+.......... .....+.+++.+|..+...+++.+
T Consensus 190 ~~~ka~~~~~~~~~liakLa~~~~~~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e~~~~G~ 269 (345)
T cd09034 190 FLLKAEEDKKAKLSLLARLACEAAKYYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDEANKIGE 269 (345)
T ss_pred HHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHH
Q ss_pred HHHHHHHHHHHHHh
Q 004829 412 ALEHYVLASMSMAA 425 (728)
Q Consensus 412 A~~~~~~al~~~~~ 425 (728)
|+.+++.|...+..
T Consensus 270 aia~L~~A~~~~~~ 283 (345)
T cd09034 270 AIARLQAALELLKE 283 (345)
T ss_pred HHHHHHHHHHHHHH
No 499
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=33.87 E-value=2.2e+02 Score=21.84 Aligned_cols=43 Identities=14% Similarity=0.072 Sum_probs=29.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHc-CCCChHHHHHHHHH
Q 004829 649 LAGTYDAMGRIDDAIEILEYVVGMREEKL-GTANPDVEDEKRRL 691 (728)
Q Consensus 649 La~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~p~~~~~~~~L 691 (728)
.|.-....|++++|+.+|..+++.+...+ ...+|.....+...
T Consensus 12 ~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k 55 (75)
T cd02684 12 QAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQK 55 (75)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 34445667999999999999999887765 34556554444433
No 500
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=33.69 E-value=1.9e+02 Score=27.48 Aligned_cols=79 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004829 603 ALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANP 682 (728)
Q Consensus 603 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p 682 (728)
.+.....-+++.+...+|+...+.-++. .|........|-.+|.-.|+|++|..-++-+-.+. +...
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--------kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~-----p~~t 69 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--------KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLS-----PQDT 69 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--------CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcC-----cccc
Q ss_pred HHHHHHHHHHHH
Q 004829 683 DVEDEKRRLAEL 694 (728)
Q Consensus 683 ~~~~~~~~La~~ 694 (728)
.....|.++-.+
T Consensus 70 ~~a~lyr~lir~ 81 (273)
T COG4455 70 VGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHHH
Done!