Query 004829
Match_columns 728
No_of_seqs 1578 out of 3756
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 07:07:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-36 5.6E-41 323.0 42.1 385 227-700 4-388 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 3.4E-35 1.2E-39 312.8 38.5 370 271-720 4-373 (388)
3 2xpi_A Anaphase-promoting comp 100.0 3.4E-32 1.2E-36 307.0 43.7 431 220-720 82-584 (597)
4 2gw1_A Mitochondrial precursor 100.0 2.8E-31 9.6E-36 293.4 39.0 392 221-673 5-479 (514)
5 2xpi_A Anaphase-promoting comp 100.0 1.2E-30 4.3E-35 294.2 44.4 408 223-696 118-595 (597)
6 2gw1_A Mitochondrial precursor 100.0 2.9E-31 9.8E-36 293.3 33.5 393 265-719 5-482 (514)
7 3fp2_A TPR repeat-containing p 100.0 2.5E-30 8.7E-35 287.5 40.1 392 220-673 23-492 (537)
8 3fp2_A TPR repeat-containing p 100.0 4.3E-30 1.5E-34 285.7 36.6 392 264-720 23-496 (537)
9 2y4t_A DNAJ homolog subfamily 100.0 1.2E-29 4.1E-34 275.5 36.6 401 209-705 13-445 (450)
10 4g1t_A Interferon-induced prot 100.0 2E-29 6.8E-34 275.6 32.7 411 238-721 26-465 (472)
11 4g1t_A Interferon-induced prot 100.0 4.5E-30 1.5E-34 280.8 27.4 386 217-673 46-460 (472)
12 3sf4_A G-protein-signaling mod 100.0 6.6E-28 2.3E-32 257.6 40.2 344 309-668 9-372 (406)
13 3sf4_A G-protein-signaling mod 100.0 6.5E-28 2.2E-32 257.6 40.0 344 265-625 8-371 (406)
14 2y4t_A DNAJ homolog subfamily 100.0 4.7E-28 1.6E-32 262.9 38.5 353 309-721 26-416 (450)
15 3ieg_A DNAJ homolog subfamily 100.0 1.1E-27 3.8E-32 251.0 38.7 332 309-699 3-354 (359)
16 3ieg_A DNAJ homolog subfamily 100.0 2E-27 6.9E-32 249.0 36.4 336 266-657 3-354 (359)
17 4a1s_A PINS, partner of inscut 100.0 2.2E-26 7.5E-31 246.6 37.3 314 263-591 45-375 (411)
18 4a1s_A PINS, partner of inscut 100.0 4.7E-26 1.6E-30 244.0 39.2 315 347-675 44-375 (411)
19 3ro2_A PINS homolog, G-protein 100.0 6.4E-26 2.2E-30 234.9 38.7 312 266-592 5-336 (338)
20 2xm6_A Protein corresponding t 100.0 2.5E-25 8.7E-30 244.1 42.2 374 219-698 36-453 (490)
21 3ro2_A PINS homolog, G-protein 100.0 4.9E-25 1.7E-29 228.3 39.6 310 310-633 6-335 (338)
22 1fch_A Peroxisomal targeting s 99.9 1.7E-26 5.7E-31 243.4 24.1 317 274-636 33-365 (368)
23 2xm6_A Protein corresponding t 99.9 2.9E-24 1E-28 235.6 42.1 352 266-717 39-434 (490)
24 1fch_A Peroxisomal targeting s 99.9 2.9E-26 1E-30 241.5 21.9 317 360-717 34-361 (368)
25 3hym_B Cell division cycle pro 99.9 1.7E-25 5.7E-30 231.6 27.1 300 349-702 20-322 (330)
26 3hym_B Cell division cycle pro 99.9 2E-25 6.8E-30 231.0 26.7 294 312-660 25-322 (330)
27 3ulq_A Response regulator aspa 99.9 1.4E-23 4.7E-28 222.6 41.4 349 311-678 14-374 (383)
28 3ulq_A Response regulator aspa 99.9 1.3E-23 4.4E-28 222.8 38.0 352 221-594 11-374 (383)
29 4eqf_A PEX5-related protein; a 99.9 1.3E-24 4.6E-29 228.7 28.8 281 395-711 67-352 (365)
30 4eqf_A PEX5-related protein; a 99.9 8.8E-25 3E-29 230.1 23.6 285 310-634 66-360 (365)
31 3q15_A PSP28, response regulat 99.9 4.3E-22 1.5E-26 210.6 39.2 343 226-592 16-369 (378)
32 3q15_A PSP28, response regulat 99.9 1.5E-22 5.2E-27 214.1 33.3 337 318-678 21-371 (378)
33 3cv0_A Peroxisome targeting si 99.9 2.5E-23 8.5E-28 214.9 26.3 284 395-725 23-325 (327)
34 3cv0_A Peroxisome targeting si 99.9 1E-22 3.5E-27 210.2 28.2 289 266-594 21-321 (327)
35 3nf1_A KLC 1, kinesin light ch 99.9 6.2E-22 2.1E-26 202.8 31.2 279 343-630 19-307 (311)
36 1hz4_A MALT regulatory protein 99.9 8.2E-21 2.8E-25 200.3 40.6 312 350-675 13-325 (373)
37 3nf1_A KLC 1, kinesin light ch 99.9 1.4E-21 4.9E-26 200.0 32.0 282 259-550 20-310 (311)
38 2ooe_A Cleavage stimulation fa 99.9 4.2E-21 1.4E-25 212.7 34.3 427 217-721 8-498 (530)
39 2h6f_A Protein farnesyltransfe 99.9 7.3E-22 2.5E-26 206.6 23.5 253 391-698 95-366 (382)
40 3uq3_A Heat shock protein STI1 99.9 4.7E-21 1.6E-25 190.4 28.3 253 392-694 4-256 (258)
41 3uq3_A Heat shock protein STI1 99.9 1.1E-20 3.8E-25 187.6 30.9 254 348-652 2-256 (258)
42 3u4t_A TPR repeat-containing p 99.9 7.4E-22 2.5E-26 198.2 22.1 263 352-657 4-269 (272)
43 2h6f_A Protein farnesyltransfe 99.9 7.8E-22 2.7E-26 206.4 22.8 255 347-656 93-366 (382)
44 1hz4_A MALT regulatory protein 99.9 5.4E-20 1.9E-24 194.0 37.3 313 266-593 14-327 (373)
45 3edt_B KLC 2, kinesin light ch 99.9 4E-21 1.4E-25 193.5 25.3 268 320-588 12-281 (283)
46 3u4t_A TPR repeat-containing p 99.9 9.9E-22 3.4E-26 197.3 18.4 249 434-720 4-255 (272)
47 3e4b_A ALGK; tetratricopeptide 99.9 8.4E-22 2.9E-26 212.8 19.1 384 226-717 7-423 (452)
48 2pl2_A Hypothetical conserved 99.9 2E-21 6.7E-26 187.9 18.7 199 432-671 4-213 (217)
49 3edt_B KLC 2, kinesin light ch 99.9 3.8E-20 1.3E-24 186.4 26.6 269 443-715 11-281 (283)
50 2pl2_A Hypothetical conserved 99.9 1.3E-20 4.5E-25 182.2 19.9 197 266-502 5-212 (217)
51 3e4b_A ALGK; tetratricopeptide 99.9 4.9E-21 1.7E-25 206.8 17.5 352 270-717 7-389 (452)
52 2ooe_A Cleavage stimulation fa 99.8 7.9E-19 2.7E-23 194.4 33.6 386 263-718 10-457 (530)
53 3mkr_A Coatomer subunit epsilo 99.8 9.8E-20 3.4E-24 184.2 23.8 278 359-705 7-285 (291)
54 3mkr_A Coatomer subunit epsilo 99.8 7.3E-19 2.5E-23 177.8 26.6 279 229-582 6-288 (291)
55 1qqe_A Vesicular transport pro 99.8 5.3E-19 1.8E-23 179.4 25.4 250 366-653 32-284 (292)
56 1qqe_A Vesicular transport pro 99.8 8.7E-19 3E-23 177.8 24.0 250 408-695 32-284 (292)
57 1xi4_A Clathrin heavy chain; a 99.8 1.9E-17 6.4E-22 189.2 36.7 360 226-705 989-1375(1630)
58 1ouv_A Conserved hypothetical 99.8 2.6E-18 8.8E-23 172.6 26.8 226 218-504 2-251 (273)
59 2q7f_A YRRB protein; TPR, prot 99.8 1.7E-19 5.8E-24 177.4 17.1 221 431-699 21-241 (243)
60 1ouv_A Conserved hypothetical 99.8 5.7E-18 1.9E-22 170.1 28.0 222 393-672 6-251 (273)
61 1xi4_A Clathrin heavy chain; a 99.8 8.8E-17 3E-21 183.7 39.6 348 228-699 1055-1415(1630)
62 2q7f_A YRRB protein; TPR, prot 99.8 5.3E-19 1.8E-23 173.8 17.8 220 392-657 22-241 (243)
63 1xnf_A Lipoprotein NLPI; TPR, 99.8 9E-19 3.1E-23 175.8 19.6 258 400-709 12-269 (275)
64 2ifu_A Gamma-SNAP; membrane fu 99.8 2E-17 6.7E-22 169.1 28.4 245 406-664 4-253 (307)
65 2ho1_A Type 4 fimbrial biogene 99.8 4.9E-18 1.7E-22 168.1 22.8 204 432-673 36-239 (252)
66 2vq2_A PILW, putative fimbrial 99.8 1.7E-17 5.8E-22 160.7 25.4 206 429-672 4-211 (225)
67 3vtx_A MAMA; tetratricopeptide 99.8 5.8E-18 2E-22 158.8 21.3 167 432-630 4-170 (184)
68 2ho1_A Type 4 fimbrial biogene 99.8 9E-18 3.1E-22 166.2 23.9 211 471-720 32-243 (252)
69 1xnf_A Lipoprotein NLPI; TPR, 99.8 2.7E-18 9.4E-23 172.2 20.3 258 358-666 12-269 (275)
70 4abn_A Tetratricopeptide repea 99.8 1.8E-18 6.1E-23 187.9 20.2 202 427-669 96-318 (474)
71 3vtx_A MAMA; tetratricopeptide 99.8 8.1E-18 2.8E-22 157.8 21.9 167 474-672 4-170 (184)
72 2vq2_A PILW, putative fimbrial 99.8 2.6E-17 9E-22 159.4 25.6 211 471-720 4-216 (225)
73 2ifu_A Gamma-SNAP; membrane fu 99.8 4.2E-17 1.4E-21 166.7 27.6 248 279-539 4-253 (307)
74 4abn_A Tetratricopeptide repea 99.8 4.3E-18 1.5E-22 184.9 20.4 218 241-500 79-317 (474)
75 4gyw_A UDP-N-acetylglucosamine 99.8 7.8E-18 2.7E-22 189.9 20.8 176 470-677 4-179 (723)
76 4gyw_A UDP-N-acetylglucosamine 99.8 6.5E-18 2.2E-22 190.5 19.6 178 514-723 5-182 (723)
77 4i17_A Hypothetical protein; T 99.7 2E-17 6.7E-22 161.2 17.0 189 433-654 7-225 (228)
78 3qky_A Outer membrane assembly 99.7 1.3E-16 4.5E-21 158.9 22.0 224 429-705 11-252 (261)
79 4i17_A Hypothetical protein; T 99.7 3E-16 1E-20 152.8 19.4 188 267-485 8-224 (228)
80 3qky_A Outer membrane assembly 99.7 9.2E-16 3.1E-20 152.7 21.2 223 263-538 12-252 (261)
81 2ond_A Cleavage stimulation fa 99.7 1.5E-15 5.2E-20 155.2 22.7 228 450-721 33-276 (308)
82 4b4t_Q 26S proteasome regulato 99.7 1.4E-14 4.9E-19 155.7 30.5 240 354-598 7-255 (434)
83 2ond_A Cleavage stimulation fa 99.7 3.3E-15 1.1E-19 152.6 20.7 222 410-673 33-271 (308)
84 2qfc_A PLCR protein; TPR, HTH, 99.7 2.1E-14 7.2E-19 145.5 26.3 199 471-676 71-270 (293)
85 3n71_A Histone lysine methyltr 99.7 4.5E-15 1.5E-19 159.2 21.4 150 565-715 315-464 (490)
86 1b89_A Protein (clathrin heavy 99.7 9.4E-17 3.2E-21 165.8 7.8 328 238-670 18-353 (449)
87 3gw4_A Uncharacterized protein 99.7 2E-14 7E-19 136.6 23.5 193 320-527 3-196 (203)
88 3gw4_A Uncharacterized protein 99.7 1.5E-14 5.3E-19 137.4 22.6 195 443-652 2-196 (203)
89 1b89_A Protein (clathrin heavy 99.6 8.8E-17 3E-21 166.0 6.1 322 275-705 12-346 (449)
90 3u3w_A Transcriptional activat 99.6 1.4E-14 4.8E-19 146.8 22.2 198 472-676 72-270 (293)
91 2qfc_A PLCR protein; TPR, HTH, 99.6 1.5E-14 5.2E-19 146.5 21.1 195 395-594 77-272 (293)
92 2pzi_A Probable serine/threoni 99.6 1.2E-15 4.2E-20 173.1 14.3 207 434-676 395-602 (681)
93 3as5_A MAMA; tetratricopeptide 99.6 1E-14 3.5E-19 136.1 18.0 171 471-673 4-174 (186)
94 3u3w_A Transcriptional activat 99.6 1.6E-14 5.6E-19 146.3 20.9 193 395-595 77-273 (293)
95 3as5_A MAMA; tetratricopeptide 99.6 8E-15 2.8E-19 136.8 17.2 175 515-721 5-179 (186)
96 4b4t_Q 26S proteasome regulato 99.6 1.7E-13 5.8E-18 147.2 29.6 239 396-641 7-256 (434)
97 2yhc_A BAMD, UPF0169 lipoprote 99.6 3.3E-14 1.1E-18 137.9 20.6 184 518-721 4-219 (225)
98 3urz_A Uncharacterized protein 99.6 1.4E-14 4.7E-19 138.6 17.6 165 433-630 4-186 (208)
99 4ga2_A E3 SUMO-protein ligase 99.6 1.2E-15 4.1E-20 137.5 8.9 147 523-700 2-149 (150)
100 2pzi_A Probable serine/threoni 99.6 7.4E-15 2.5E-19 166.7 17.4 201 320-552 402-603 (681)
101 3urz_A Uncharacterized protein 99.6 5.3E-14 1.8E-18 134.5 20.3 166 475-673 4-187 (208)
102 4e6h_A MRNA 3'-END-processing 99.6 1.4E-11 4.8E-16 137.3 41.7 441 214-719 58-574 (679)
103 4ga2_A E3 SUMO-protein ligase 99.6 2.6E-15 8.8E-20 135.3 9.6 147 480-658 2-149 (150)
104 2yhc_A BAMD, UPF0169 lipoprote 99.6 4.5E-13 1.5E-17 129.8 25.1 191 433-671 4-212 (225)
105 3n71_A Histone lysine methyltr 99.6 1.1E-13 3.7E-18 148.5 21.9 153 521-673 312-465 (490)
106 3ro3_A PINS homolog, G-protein 99.6 3.3E-13 1.1E-17 122.6 22.1 158 347-508 5-162 (164)
107 3ro3_A PINS homolog, G-protein 99.6 3.9E-13 1.3E-17 122.1 21.1 157 390-551 6-162 (164)
108 3qww_A SET and MYND domain-con 99.5 5.6E-13 1.9E-17 140.6 19.1 122 571-692 310-431 (433)
109 4gco_A Protein STI-1; structur 99.5 4E-13 1.4E-17 116.7 14.9 117 514-653 9-125 (126)
110 3dra_A Protein farnesyltransfe 99.5 1.2E-12 4.2E-17 131.1 20.5 229 444-718 43-291 (306)
111 3dra_A Protein farnesyltransfe 99.5 4.5E-12 1.5E-16 127.0 24.1 237 364-651 46-301 (306)
112 4gco_A Protein STI-1; structur 99.5 2.4E-13 8.3E-18 118.1 12.9 117 555-695 9-125 (126)
113 3qwp_A SET and MYND domain-con 99.5 6.1E-13 2.1E-17 140.7 17.7 131 568-698 296-426 (429)
114 3qou_A Protein YBBN; thioredox 99.5 9E-13 3.1E-17 132.8 16.5 170 471-672 113-284 (287)
115 2r5s_A Uncharacterized protein 99.5 2.1E-13 7E-18 126.6 10.8 165 475-672 6-173 (176)
116 2r5s_A Uncharacterized protein 99.5 7.1E-13 2.4E-17 122.9 14.0 168 220-421 4-172 (176)
117 4f3v_A ESX-1 secretion system 99.4 8E-13 2.7E-17 129.1 13.7 210 476-718 8-240 (282)
118 3rjv_A Putative SEL1 repeat pr 99.4 3.2E-12 1.1E-16 122.4 17.8 177 450-672 3-197 (212)
119 3qou_A Protein YBBN; thioredox 99.4 1.1E-12 3.9E-17 132.1 14.9 165 517-713 116-282 (287)
120 3rjv_A Putative SEL1 repeat pr 99.4 5.5E-12 1.9E-16 120.8 18.1 177 240-462 3-197 (212)
121 2vsy_A XCC0866; transferase, g 99.4 1.5E-12 5E-17 145.2 15.9 165 446-650 2-169 (568)
122 2vsy_A XCC0866; transferase, g 99.4 1.5E-12 5E-17 145.2 15.8 159 531-721 2-163 (568)
123 4f3v_A ESX-1 secretion system 99.4 1.9E-11 6.7E-16 119.4 20.9 220 223-481 8-247 (282)
124 1p5q_A FKBP52, FK506-binding p 99.4 1.9E-12 6.4E-17 133.6 12.6 163 487-674 125-296 (336)
125 3gyz_A Chaperone protein IPGC; 99.4 3.9E-12 1.3E-16 113.9 13.0 105 553-673 30-134 (151)
126 3gyz_A Chaperone protein IPGC; 99.4 6.2E-13 2.1E-17 119.1 7.5 106 597-719 32-137 (151)
127 1p5q_A FKBP52, FK506-binding p 99.4 6.6E-13 2.3E-17 137.0 8.8 163 530-715 125-294 (336)
128 4e6h_A MRNA 3'-END-processing 99.4 2.2E-09 7.6E-14 119.6 36.6 412 240-717 49-535 (679)
129 4gcn_A Protein STI-1; structur 99.4 4.3E-11 1.5E-15 103.9 18.2 109 514-630 4-112 (127)
130 4gcn_A Protein STI-1; structur 99.4 9.9E-12 3.4E-16 108.0 14.0 109 471-588 4-112 (127)
131 2vgx_A Chaperone SYCD; alterna 99.3 4.6E-12 1.6E-16 113.5 11.7 114 557-691 19-132 (148)
132 2fo7_A Synthetic consensus TPR 99.3 2.3E-11 7.9E-16 106.2 15.5 134 560-718 2-135 (136)
133 2fo7_A Synthetic consensus TPR 99.3 4.7E-11 1.6E-15 104.2 17.0 131 519-672 2-132 (136)
134 3qww_A SET and MYND domain-con 99.3 4.8E-11 1.6E-15 125.8 19.8 122 529-650 309-431 (433)
135 3dss_A Geranylgeranyl transfer 99.3 1.3E-10 4.5E-15 116.9 21.9 228 443-719 39-308 (331)
136 3qwp_A SET and MYND domain-con 99.3 4.4E-11 1.5E-15 126.5 19.0 131 526-656 295-426 (429)
137 2fbn_A 70 kDa peptidylprolyl i 99.3 5.7E-12 1.9E-16 119.3 10.7 166 479-669 8-183 (198)
138 1a17_A Serine/threonine protei 99.3 6.3E-11 2.2E-15 108.0 17.4 138 515-675 10-149 (166)
139 2c2l_A CHIP, carboxy terminus 99.3 2.1E-11 7.2E-16 122.3 14.7 195 432-671 3-198 (281)
140 3upv_A Heat shock protein STI1 99.3 7.2E-11 2.5E-15 102.3 16.2 122 558-697 3-124 (126)
141 1a17_A Serine/threonine protei 99.3 9.3E-11 3.2E-15 106.9 17.4 141 431-593 11-151 (166)
142 3dss_A Geranylgeranyl transfer 99.3 7.3E-10 2.5E-14 111.5 24.9 236 405-694 41-318 (331)
143 2c2l_A CHIP, carboxy terminus 99.3 7.1E-12 2.4E-16 125.7 9.7 195 266-504 4-199 (281)
144 1hh8_A P67PHOX, NCF-2, neutrop 99.3 3.5E-11 1.2E-15 115.1 14.2 141 393-550 6-153 (213)
145 3upv_A Heat shock protein STI1 99.3 9.8E-11 3.3E-15 101.5 15.4 122 517-655 3-124 (126)
146 2vgx_A Chaperone SYCD; alterna 99.3 1.2E-11 4.2E-16 110.6 9.9 107 428-551 16-122 (148)
147 2fbn_A 70 kDa peptidylprolyl i 99.3 6E-12 2E-16 119.1 7.7 169 523-714 9-185 (198)
148 3q7a_A Farnesyltransferase alp 99.3 1.1E-10 3.8E-15 118.0 17.3 245 430-715 51-331 (349)
149 1hh8_A P67PHOX, NCF-2, neutrop 99.2 4.8E-11 1.7E-15 114.1 13.5 140 560-719 7-154 (213)
150 3rkv_A Putative peptidylprolyl 99.2 4.7E-11 1.6E-15 108.8 12.7 133 557-705 9-152 (162)
151 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 6.6E-12 2.3E-16 135.3 8.0 162 530-714 246-414 (457)
152 2lni_A Stress-induced-phosphop 99.2 9E-11 3.1E-15 102.4 13.4 122 555-700 12-133 (133)
153 2xcb_A PCRH, regulatory protei 99.2 1.1E-10 3.7E-15 103.7 14.0 104 554-673 13-116 (142)
154 3sz7_A HSC70 cochaperone (SGT) 99.2 1.2E-10 4.1E-15 106.3 14.1 104 554-673 6-109 (164)
155 2hr2_A Hypothetical protein; a 99.2 2.9E-10 1E-14 100.3 15.6 114 517-631 10-132 (159)
156 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 2.3E-11 7.7E-16 131.1 10.3 159 487-670 246-413 (457)
157 2vyi_A SGTA protein; chaperone 99.2 2.7E-10 9.2E-15 98.8 15.3 124 513-659 7-130 (131)
158 2lni_A Stress-induced-phosphop 99.2 1.2E-10 4.2E-15 101.5 12.9 123 513-658 11-133 (133)
159 3q7a_A Farnesyltransferase alp 99.2 9.4E-10 3.2E-14 111.2 20.7 254 393-691 54-343 (349)
160 2vyi_A SGTA protein; chaperone 99.2 2.3E-10 7.7E-15 99.3 14.2 122 557-702 10-131 (131)
161 2hr2_A Hypothetical protein; a 99.2 5.3E-10 1.8E-14 98.6 16.4 128 432-561 10-145 (159)
162 2xcb_A PCRH, regulatory protei 99.2 2.6E-10 8.9E-15 101.2 14.5 107 428-551 13-119 (142)
163 3sz7_A HSC70 cochaperone (SGT) 99.2 3.4E-10 1.2E-14 103.3 15.4 107 428-551 6-112 (164)
164 3rkv_A Putative peptidylprolyl 99.2 2E-10 7E-15 104.5 13.5 106 391-504 9-126 (162)
165 2e2e_A Formate-dependent nitri 99.2 9.2E-11 3.1E-15 108.6 10.2 122 528-672 20-144 (177)
166 3q49_B STIP1 homology and U bo 99.2 4.4E-10 1.5E-14 98.8 13.7 102 558-675 8-109 (137)
167 1wao_1 Serine/threonine protei 99.1 1E-11 3.5E-16 134.3 3.1 168 515-705 3-186 (477)
168 1na0_A Designed protein CTPR3; 99.1 9.3E-10 3.2E-14 94.4 14.6 118 558-699 8-125 (125)
169 2e2e_A Formate-dependent nitri 99.1 1E-10 3.5E-15 108.3 9.0 128 569-721 20-150 (177)
170 1na0_A Designed protein CTPR3; 99.1 1.6E-09 5.4E-14 93.0 15.2 118 517-657 8-125 (125)
171 1hxi_A PEX5, peroxisome target 99.1 3.2E-10 1.1E-14 97.4 10.2 101 603-720 19-119 (121)
172 1ihg_A Cyclophilin 40; ppiase 99.1 3E-10 1E-14 118.3 11.9 130 561-706 225-362 (370)
173 1wao_1 Serine/threonine protei 99.1 5.3E-11 1.8E-15 128.7 5.5 177 393-592 6-201 (477)
174 3mv2_B Coatomer subunit epsilo 99.1 1.6E-09 5.4E-14 107.3 15.4 264 360-686 22-291 (310)
175 2xev_A YBGF; tetratricopeptide 99.1 2.2E-09 7.5E-14 93.1 14.8 118 561-693 4-121 (129)
176 1elw_A TPR1-domain of HOP; HOP 99.1 2.1E-09 7.1E-14 91.2 14.3 113 559-695 4-116 (118)
177 3q49_B STIP1 homology and U bo 99.1 1.4E-09 5E-14 95.4 13.4 105 430-551 6-110 (137)
178 1hxi_A PEX5, peroxisome target 99.1 5.5E-10 1.9E-14 95.9 10.2 97 561-673 19-115 (121)
179 1ihg_A Cyclophilin 40; ppiase 99.0 1.3E-09 4.6E-14 113.4 14.1 130 394-540 224-363 (370)
180 1elr_A TPR2A-domain of HOP; HO 99.0 4.5E-09 1.5E-13 91.0 15.4 124 517-657 3-126 (131)
181 1elr_A TPR2A-domain of HOP; HO 99.0 1.9E-09 6.4E-14 93.4 12.7 124 558-699 3-126 (131)
182 2if4_A ATFKBP42; FKBP-like, al 99.0 3.6E-10 1.2E-14 116.4 8.9 145 560-721 180-334 (338)
183 3mv2_B Coatomer subunit epsilo 99.0 1E-08 3.5E-13 101.5 18.7 254 401-719 21-286 (310)
184 1elw_A TPR1-domain of HOP; HOP 99.0 4.1E-09 1.4E-13 89.3 13.9 114 517-653 3-116 (118)
185 2dba_A Smooth muscle cell asso 99.0 3.3E-09 1.1E-13 94.3 12.1 119 557-696 26-144 (148)
186 2dba_A Smooth muscle cell asso 99.0 7E-09 2.4E-13 92.1 14.2 122 216-361 22-143 (148)
187 2xev_A YBGF; tetratricopeptide 99.0 1.3E-08 4.5E-13 88.1 15.1 103 223-338 3-105 (129)
188 1dce_A Protein (RAB geranylger 99.0 4.2E-09 1.4E-13 115.8 14.3 177 445-661 40-244 (567)
189 2if4_A ATFKBP42; FKBP-like, al 99.0 1.1E-09 3.9E-14 112.7 9.0 136 393-551 179-332 (338)
190 1dce_A Protein (RAB geranylger 98.9 5.3E-09 1.8E-13 115.0 14.0 178 486-703 39-244 (567)
191 3k9i_A BH0479 protein; putativ 98.9 2.7E-09 9.3E-14 90.9 9.2 90 571-673 2-91 (117)
192 2kck_A TPR repeat; tetratricop 98.9 3.9E-09 1.4E-13 88.5 9.2 103 601-720 6-111 (112)
193 3k9i_A BH0479 protein; putativ 98.8 1.1E-08 3.7E-13 87.1 9.1 93 445-551 2-94 (117)
194 2kck_A TPR repeat; tetratricop 98.8 2.8E-09 9.6E-14 89.5 5.2 105 431-550 4-109 (112)
195 2uy1_A Cleavage stimulation fa 98.8 5.3E-06 1.8E-10 89.6 30.0 383 217-714 9-412 (493)
196 1zu2_A Mitochondrial import re 98.8 1.4E-08 4.8E-13 89.3 7.6 91 444-551 13-124 (158)
197 1zu2_A Mitochondrial import re 98.8 8.5E-09 2.9E-13 90.7 6.1 88 570-673 13-121 (158)
198 2l6j_A TPR repeat-containing p 98.7 3.9E-08 1.3E-12 82.4 8.6 89 601-705 4-98 (111)
199 1na3_A Designed protein CTPR2; 98.7 9.3E-08 3.2E-12 76.7 10.3 85 599-699 7-91 (91)
200 2uy1_A Cleavage stimulation fa 98.6 9.5E-06 3.3E-10 87.6 27.6 340 279-712 7-380 (493)
201 2l6j_A TPR repeat-containing p 98.6 1.1E-08 3.8E-13 85.8 3.5 94 559-668 4-103 (111)
202 2kat_A Uncharacterized protein 98.6 3.2E-07 1.1E-11 77.5 12.2 87 283-386 2-88 (115)
203 2kat_A Uncharacterized protein 98.6 9.3E-08 3.2E-12 80.9 8.8 82 577-674 3-84 (115)
204 1na3_A Designed protein CTPR2; 98.6 2.4E-07 8.3E-12 74.2 10.5 86 430-532 6-91 (91)
205 1klx_A Cysteine rich protein B 98.5 6E-07 2E-11 78.7 11.5 110 532-672 9-126 (138)
206 3ma5_A Tetratricopeptide repea 98.5 3.5E-07 1.2E-11 75.1 9.4 87 600-700 6-92 (100)
207 1klx_A Cysteine rich protein B 98.4 1.1E-06 3.7E-11 77.0 10.5 109 238-380 10-126 (138)
208 3ma5_A Tetratricopeptide repea 98.4 1.6E-06 5.4E-11 71.1 10.8 69 310-386 8-76 (100)
209 2kc7_A BFR218_protein; tetratr 98.3 7.1E-07 2.4E-11 72.9 6.6 92 605-721 4-96 (99)
210 2kc7_A BFR218_protein; tetratr 98.3 1.6E-06 5.6E-11 70.7 8.0 90 437-551 4-94 (99)
211 3txn_A 26S proteasome regulato 98.2 0.00023 7.7E-09 73.0 23.8 211 395-616 21-235 (394)
212 3txn_A 26S proteasome regulato 98.2 0.00041 1.4E-08 71.1 23.5 215 434-659 20-236 (394)
213 2v5f_A Prolyl 4-hydroxylase su 98.1 4.3E-05 1.5E-09 62.8 11.9 81 394-482 6-87 (104)
214 2v5f_A Prolyl 4-hydroxylase su 98.1 4.6E-05 1.6E-09 62.6 12.0 71 518-588 5-75 (104)
215 3u64_A Protein TP_0956; tetrat 98.0 0.00028 9.4E-09 68.0 17.8 107 429-551 148-273 (301)
216 3ly7_A Transcriptional activat 98.0 0.00013 4.5E-09 73.5 16.2 134 312-462 199-339 (372)
217 3ly7_A Transcriptional activat 98.0 0.00017 5.9E-09 72.6 16.0 122 490-630 214-339 (372)
218 4g26_A Pentatricopeptide repea 97.9 0.00072 2.5E-08 72.8 20.5 168 520-715 28-204 (501)
219 4g26_A Pentatricopeptide repea 97.9 0.001 3.4E-08 71.7 21.1 168 477-672 28-204 (501)
220 3u64_A Protein TP_0956; tetrat 97.8 6.8E-05 2.3E-09 72.2 9.9 103 600-719 151-273 (301)
221 4b4t_P 26S proteasome regulato 97.8 0.012 4.1E-07 62.1 27.9 218 407-633 30-250 (445)
222 1pc2_A Mitochondria fission pr 97.8 0.00037 1.3E-08 60.4 12.6 65 601-673 32-101 (152)
223 3ffl_A Anaphase-promoting comp 97.7 0.00033 1.1E-08 61.1 11.9 111 266-376 20-147 (167)
224 3ffl_A Anaphase-promoting comp 97.7 0.00048 1.6E-08 60.0 12.8 113 222-335 20-148 (167)
225 1pc2_A Mitochondria fission pr 97.7 0.00014 4.9E-09 63.0 9.3 88 618-721 15-106 (152)
226 3bee_A Putative YFRE protein; 97.7 0.00032 1.1E-08 55.9 10.3 64 601-672 6-72 (93)
227 3bee_A Putative YFRE protein; 97.5 0.00018 6.2E-09 57.4 7.1 71 639-718 2-75 (93)
228 4b4t_P 26S proteasome regulato 97.3 0.037 1.3E-06 58.3 24.0 220 365-594 30-253 (445)
229 1nzn_A CGI-135 protein, fissio 97.0 0.0047 1.6E-07 51.4 9.7 88 618-721 18-109 (126)
230 1nzn_A CGI-135 protein, fissio 96.6 0.028 9.6E-07 46.7 11.5 66 601-673 35-104 (126)
231 4h7y_A Dual specificity protei 96.5 0.04 1.4E-06 46.9 12.3 110 431-550 11-126 (161)
232 4h7y_A Dual specificity protei 96.3 0.025 8.7E-07 48.1 9.5 105 560-673 14-124 (161)
233 2ff4_A Probable regulatory pro 95.8 0.2 7E-06 51.6 15.9 131 522-688 119-251 (388)
234 3mkq_A Coatomer beta'-subunit; 95.7 0.36 1.2E-05 55.3 19.8 162 437-660 633-800 (814)
235 3mkq_A Coatomer beta'-subunit; 95.7 0.2 6.8E-06 57.5 17.5 47 319-378 662-708 (814)
236 4b4t_R RPN7, 26S proteasome re 95.6 0.054 1.8E-06 56.8 11.2 112 429-548 127-238 (429)
237 4b4t_R RPN7, 26S proteasome re 95.5 0.16 5.5E-06 53.2 14.0 109 473-588 129-237 (429)
238 3lpz_A GET4 (YOR164C homolog); 95.4 2.4 8.1E-05 41.9 25.7 223 435-700 57-297 (336)
239 3o48_A Mitochondria fission 1 95.0 0.14 4.7E-06 42.8 9.2 70 643-721 40-113 (134)
240 3o48_A Mitochondria fission 1 95.0 0.34 1.2E-05 40.4 11.6 64 601-672 40-107 (134)
241 1y8m_A FIS1; mitochondria, unk 94.7 0.23 7.8E-06 42.0 9.9 72 641-721 37-112 (144)
242 4gns_B Protein CSD3, chitin bi 94.7 0.35 1.2E-05 53.8 14.3 123 531-669 261-397 (754)
243 4ady_A RPN2, 26S proteasome re 94.6 7.9 0.00027 44.0 43.2 175 514-713 409-587 (963)
244 1y8m_A FIS1; mitochondria, unk 94.6 0.39 1.3E-05 40.6 10.9 64 601-672 39-106 (144)
245 4b4t_S RPN3, 26S proteasome re 94.5 0.39 1.3E-05 50.5 13.4 144 360-506 145-301 (523)
246 4b4t_S RPN3, 26S proteasome re 94.4 0.37 1.3E-05 50.6 12.8 171 402-576 145-328 (523)
247 2wpv_A GET4, UPF0363 protein Y 94.3 4.4 0.00015 39.7 27.4 131 407-542 27-158 (312)
248 4gns_B Protein CSD3, chitin bi 93.9 0.3 1E-05 54.4 11.7 59 311-377 339-397 (754)
249 2ff4_A Probable regulatory pro 93.7 1.7 5.7E-05 44.7 16.3 103 273-383 122-237 (388)
250 3mkq_B Coatomer subunit alpha; 92.9 2.2 7.6E-05 37.8 13.3 102 231-377 14-115 (177)
251 3mkq_B Coatomer subunit alpha; 92.8 2.4 8.2E-05 37.5 13.4 102 274-418 13-114 (177)
252 3spa_A Mtrpol, DNA-directed RN 92.7 1.1 3.7E-05 51.2 13.6 104 600-715 126-230 (1134)
253 3spa_A Mtrpol, DNA-directed RN 92.2 1.3 4.3E-05 50.6 13.3 104 390-504 124-230 (1134)
254 2br9_A 14-3-3E, 14-3-3 protein 90.3 7.8 0.00027 36.0 14.6 55 450-504 147-202 (234)
255 2o8p_A 14-3-3 domain containin 90.1 11 0.00039 34.5 19.8 177 480-673 11-198 (227)
256 3lpz_A GET4 (YOR164C homolog); 89.3 18 0.00061 35.7 30.0 243 352-657 36-296 (336)
257 4fhn_B Nucleoporin NUP120; pro 89.2 7.2 0.00025 46.4 17.2 130 481-626 818-963 (1139)
258 3kae_A CDC27, possible protein 89.1 11 0.00036 32.8 20.2 175 521-719 36-241 (242)
259 3ubw_A 14-3-3E, 14-3-3 protein 88.9 15 0.00053 34.4 22.0 183 477-674 33-230 (261)
260 4fhn_B Nucleoporin NUP120; pro 88.7 6.5 0.00022 46.7 16.3 102 396-501 845-964 (1139)
261 3uzd_A 14-3-3 protein gamma; s 88.6 16 0.00053 34.2 23.1 184 477-675 6-206 (248)
262 4ady_A RPN2, 26S proteasome re 88.3 40 0.0014 38.4 32.6 175 431-628 411-587 (963)
263 3re2_A Predicted protein; meni 88.1 11 0.00037 36.9 14.0 86 427-515 249-336 (472)
264 1o9d_A 14-3-3-like protein C; 88.0 18 0.00061 34.1 21.1 183 476-673 9-208 (260)
265 2br9_A 14-3-3E, 14-3-3 protein 87.9 17 0.00058 33.7 21.1 59 617-675 146-205 (234)
266 1ya0_A SMG-7 transcript varian 87.5 1.6 5.4E-05 46.2 8.9 63 601-671 152-214 (497)
267 3iqu_A 14-3-3 protein sigma; s 86.3 21 0.00071 33.1 23.0 183 477-676 10-209 (236)
268 3u84_A Menin; MLL, JUND, ledgf 86.3 14 0.00049 36.8 13.9 91 431-524 275-367 (550)
269 4b4t_O 26S proteasome regulato 85.8 33 0.0011 34.9 17.6 131 371-506 59-200 (393)
270 4gq4_A Menin; tumor suppressor 84.9 22 0.00075 35.6 14.5 86 428-516 257-344 (489)
271 1ya0_A SMG-7 transcript varian 84.8 1.9 6.6E-05 45.5 7.9 63 434-504 153-215 (497)
272 2npm_A 14-3-3 domain containin 84.3 28 0.00095 32.8 20.9 182 476-673 29-228 (260)
273 4a5x_A MITD1, MIT domain-conta 84.2 6 0.0002 30.2 8.3 48 221-269 15-62 (86)
274 3esl_A Checkpoint serine/threo 83.4 12 0.00042 33.6 11.3 115 216-338 26-144 (202)
275 4b4t_O 26S proteasome regulato 83.0 43 0.0015 34.0 18.6 134 243-382 59-200 (393)
276 2wpv_A GET4, UPF0363 protein Y 82.4 39 0.0013 33.0 27.5 188 226-423 17-218 (312)
277 3ubw_A 14-3-3E, 14-3-3 protein 81.7 35 0.0012 32.1 20.1 55 450-504 173-228 (261)
278 3kae_A CDC27, possible protein 80.8 27 0.00094 30.3 20.1 97 312-421 36-142 (242)
279 2o8p_A 14-3-3 domain containin 78.5 41 0.0014 30.9 16.2 182 356-548 11-198 (227)
280 2w2u_A Hypothetical P60 katani 78.4 7.1 0.00024 29.6 6.8 37 221-258 18-54 (83)
281 2v6y_A AAA family ATPase, P60 77.7 7.8 0.00027 29.3 6.9 43 221-264 10-52 (83)
282 1wfd_A Hypothetical protein 15 77.6 13 0.00044 28.9 8.3 49 221-270 14-62 (93)
283 2v6x_A Vacuolar protein sortin 75.8 12 0.00041 28.5 7.6 48 221-269 12-59 (85)
284 3uzd_A 14-3-3 protein gamma; s 75.3 53 0.0018 30.6 21.2 55 450-504 148-203 (248)
285 2crb_A Nuclear receptor bindin 75.2 24 0.00083 26.9 8.7 40 221-261 14-53 (97)
286 1zbp_A Hypothetical protein VP 75.0 12 0.00039 35.6 8.7 119 319-463 7-130 (273)
287 3re2_A Predicted protein; meni 74.8 50 0.0017 32.4 13.0 71 601-674 255-327 (472)
288 2rpa_A Katanin P60 ATPase-cont 74.1 8.2 0.00028 28.7 5.9 40 223-263 13-52 (78)
289 1o9d_A 14-3-3-like protein C; 73.9 60 0.002 30.6 20.3 55 450-504 152-207 (260)
290 2wvi_A Mitotic checkpoint seri 72.1 16 0.00055 31.7 8.3 112 214-338 13-125 (164)
291 2cpt_A SKD1 protein, vacuolar 71.8 17 0.00058 29.6 8.0 55 221-276 17-72 (117)
292 3esl_A Checkpoint serine/threo 71.7 57 0.0019 29.3 14.1 87 496-588 58-144 (202)
293 2npm_A 14-3-3 domain containin 70.3 73 0.0025 30.0 19.4 182 352-548 29-228 (260)
294 3u84_A Menin; MLL, JUND, ledgf 69.9 69 0.0023 32.1 12.9 70 602-674 278-349 (550)
295 4a1g_A Mitotic checkpoint seri 67.2 47 0.0016 28.4 10.0 84 494-588 47-130 (152)
296 3iqu_A 14-3-3 protein sigma; s 66.9 80 0.0027 29.2 19.8 56 449-504 149-205 (236)
297 1zbp_A Hypothetical protein VP 65.8 92 0.0032 29.5 15.3 121 568-719 6-133 (273)
298 1qsa_A Protein (soluble lytic 65.4 1.6E+02 0.0053 32.0 30.0 194 481-705 220-433 (618)
299 4gq4_A Menin; tumor suppressor 65.2 82 0.0028 31.6 12.4 72 601-675 262-335 (489)
300 2wvi_A Mitotic checkpoint seri 64.0 29 0.00099 30.1 8.3 83 495-588 43-125 (164)
301 3efz_A 14-3-3 protein; 14-3-3, 64.0 17 0.00058 34.3 7.2 56 617-672 168-226 (268)
302 4a1g_A Mitotic checkpoint seri 63.2 25 0.00086 30.0 7.6 108 216-338 22-130 (152)
303 3efz_A 14-3-3 protein; 14-3-3, 62.0 83 0.0028 29.6 11.5 74 307-380 140-226 (268)
304 2crb_A Nuclear receptor bindin 61.1 52 0.0018 25.1 7.9 40 597-636 11-50 (97)
305 4aez_C MAD3, mitotic spindle c 59.2 83 0.0028 28.8 10.7 84 494-588 96-179 (223)
306 4aez_C MAD3, mitotic spindle c 56.6 33 0.0011 31.5 7.6 110 216-338 68-179 (223)
307 3t5v_B Nuclear mRNA export pro 55.4 60 0.0021 33.6 10.4 98 534-632 142-252 (455)
308 2ijq_A Hypothetical protein; s 54.3 29 0.001 30.0 6.5 73 355-427 36-109 (161)
309 1wy6_A Hypothetical protein ST 53.9 45 0.0015 27.9 7.1 54 610-671 100-153 (172)
310 4a5x_A MITD1, MIT domain-conta 53.8 70 0.0024 24.2 8.0 43 646-688 19-62 (86)
311 3t5v_B Nuclear mRNA export pro 53.8 67 0.0023 33.2 10.4 99 477-576 178-282 (455)
312 2qx5_A Nucleoporin NIC96; mRNA 53.4 2.5E+02 0.0086 30.6 18.3 27 517-543 535-563 (661)
313 2cpt_A SKD1 protein, vacuolar 50.6 91 0.0031 25.2 8.6 47 649-695 24-72 (117)
314 2vkj_A TM1634; membrane protei 50.2 62 0.0021 24.4 6.6 32 220-252 51-82 (106)
315 1wfd_A Hypothetical protein 15 46.3 98 0.0034 23.8 8.2 42 647-688 19-61 (93)
316 3r9m_A BRO1 domain-containing 45.7 1.6E+02 0.0056 29.4 11.8 14 534-547 142-155 (376)
317 2w2u_A Hypothetical P60 katani 45.6 79 0.0027 23.7 7.0 31 647-677 23-53 (83)
318 4gq2_M Nucleoporin NUP120; bet 45.6 1E+02 0.0035 35.5 11.5 98 221-323 839-950 (950)
319 4gq2_M Nucleoporin NUP120; bet 44.6 2.1E+02 0.0072 32.9 13.9 72 434-505 841-927 (950)
320 2v6y_A AAA family ATPase, P60 44.4 89 0.003 23.4 7.2 30 648-677 16-45 (83)
321 2v6x_A Vacuolar protein sortin 44.2 98 0.0034 23.2 8.2 45 647-691 17-62 (85)
322 2rpa_A Katanin P60 ATPase-cont 42.0 54 0.0019 24.3 5.4 33 646-678 15-47 (78)
323 2a9u_A Ubiquitin carboxyl-term 40.4 1.5E+02 0.0051 25.0 8.6 41 645-687 44-84 (144)
324 2cwy_A Hypothetical protein TT 40.3 71 0.0024 24.7 6.2 68 357-428 7-74 (94)
325 2ijq_A Hypothetical protein; s 39.0 41 0.0014 29.1 5.0 72 563-634 36-108 (161)
326 2vkj_A TM1634; membrane protei 37.2 1.3E+02 0.0045 22.6 8.2 48 308-361 52-100 (106)
327 3rau_A Tyrosine-protein phosph 34.5 3.5E+02 0.012 26.8 13.4 34 308-341 116-158 (363)
328 3t5x_A PCI domain-containing p 34.0 1.5E+02 0.005 26.7 8.3 59 472-534 11-69 (203)
329 1zb1_A BRO1 protein; AIP1, BRO 32.3 3.2E+02 0.011 27.4 11.5 118 308-425 122-289 (392)
330 2wm9_A Dedicator of cytokinesi 29.8 3.5E+02 0.012 27.6 11.3 96 600-697 10-140 (428)
331 3ax2_A Mitochondrial import re 29.7 93 0.0032 22.7 4.9 30 478-507 20-49 (73)
332 2cwy_A Hypothetical protein TT 28.1 93 0.0032 24.0 5.1 67 398-466 6-72 (94)
333 1qsa_A Protein (soluble lytic 28.1 5.9E+02 0.02 27.4 30.0 29 430-458 99-127 (618)
334 2yin_A DOCK2, dedicator of cyt 27.9 5E+02 0.017 26.5 13.4 122 511-655 8-145 (436)
335 2r17_C Vacuolar protein sortin 27.7 4.1E+02 0.014 25.4 23.0 228 361-591 15-270 (298)
336 3t5x_A PCI domain-containing p 27.4 1.6E+02 0.0054 26.5 7.4 58 349-409 12-69 (203)
337 2wb7_A PT26-6P; extra chromoso 27.2 2.8E+02 0.0094 28.7 9.4 41 326-366 449-489 (526)
338 2wb7_A PT26-6P; extra chromoso 27.2 2.4E+02 0.0084 29.0 9.1 41 618-658 449-489 (526)
339 1om2_A Protein (mitochondrial 26.5 1.3E+02 0.0044 23.2 5.4 30 478-507 23-52 (95)
340 1wy6_A Hypothetical protein ST 26.5 1.6E+02 0.0053 24.7 6.2 54 443-504 101-154 (172)
341 3myv_A SUSD superfamily protei 25.8 77 0.0026 32.9 5.6 33 598-630 187-219 (454)
342 3r9m_A BRO1 domain-containing 25.4 5.1E+02 0.017 25.7 14.2 33 308-340 113-157 (376)
343 2pm7_A Protein WEB1, protein t 24.5 5.5E+02 0.019 25.8 17.4 122 582-713 229-363 (399)
344 3kez_A Putative sugar binding 24.2 84 0.0029 32.7 5.6 33 598-630 193-225 (461)
345 2wm9_A Dedicator of cytokinesi 23.7 5.4E+02 0.018 26.2 11.4 34 305-338 7-40 (428)
346 3ax2_A Mitochondrial import re 23.6 69 0.0023 23.4 3.2 32 520-551 19-50 (73)
347 1om2_A Protein (mitochondrial 22.3 1.6E+02 0.0056 22.7 5.3 29 311-339 22-50 (95)
348 3myv_A SUSD superfamily protei 22.0 1E+02 0.0034 32.0 5.6 30 392-421 189-218 (454)
349 2qx5_A Nucleoporin NIC96; mRNA 21.3 6.3E+02 0.022 27.4 11.8 102 223-334 444-563 (661)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.6e-36 Score=322.97 Aligned_cols=385 Identities=17% Similarity=0.211 Sum_probs=344.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhH
Q 004829 227 KQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHAL 306 (728)
Q Consensus 227 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 306 (728)
.+|..++..| ++++|+..+.+++.. +|....++..+|.++...|++++|+.++++++... +..+
T Consensus 4 ~~a~~~~~~g-~~~~A~~~~~~~~~~---------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-----p~~~- 67 (388)
T 1w3b_A 4 ELAHREYQAG-DFEAAERHCMQLWRQ---------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----PLLA- 67 (388)
T ss_dssp THHHHHHHHT-CHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-
T ss_pred hHHHHHHHCC-CHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCch-
Confidence 4688899997 999999999999875 24456678899999999999999999999999864 3333
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q 004829 307 AKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTS 386 (728)
Q Consensus 307 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 386 (728)
.++..+|.+|...|++++|+.+|++++.+ .|....++..+|.++...|++++|+..|++++.+.|...
T Consensus 68 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~- 135 (388)
T 1w3b_A 68 ---EAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY- 135 (388)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT-
T ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-
Confidence 35999999999999999999999999998 788889999999999999999999999999998765432
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004829 387 PASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSA 466 (728)
Q Consensus 387 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 466 (728)
.++..+|.++...|++++|+..|.+++.. .|....++..+|.++...|++++|+..|++++.+
T Consensus 136 -------~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 198 (388)
T 1w3b_A 136 -------CVRSDLGNLLKALGRLEEAKACYLKAIET------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL---- 198 (388)
T ss_dssp -------HHHHHHHHHHHTTSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----
T ss_pred -------HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence 35889999999999999999999999876 5667889999999999999999999999999998
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 467 KGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALK 546 (728)
Q Consensus 467 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 546 (728)
.|....++..+|.++...|++++|+..|++++.+ .|....++..+|.++...|++++|+..|+++++
T Consensus 199 ----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 199 ----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL---------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp ----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7888899999999999999999999999999998 334567889999999999999999999999998
Q ss_pred HHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829 547 IYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEE 626 (728)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 626 (728)
+.+.. ..++..+|.++...|++++|+.+|++++++ .+....++..+|.++...|++++|+.+|++
T Consensus 266 ~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 266 LQPHF-------PDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp TCSSC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 75443 567889999999999999999999999987 233457899999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCC
Q 004829 627 ARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR 700 (728)
Q Consensus 627 al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 700 (728)
++++ .|+...++..+|.+|...|++++|+.+|+++++ .+|....++..+|.++..+|+
T Consensus 331 al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--------~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 331 ALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--------ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--------TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------hCCCCHHHHHhHHHHHHHccC
Confidence 9987 788888999999999999999999999999998 358888999999999998875
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.4e-35 Score=312.80 Aligned_cols=370 Identities=18% Similarity=0.231 Sum_probs=333.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHH
Q 004829 271 VLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRV 350 (728)
Q Consensus 271 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 350 (728)
.+|..++..|++++|+..|.+++... ++++. ++..+|.++...|++++|+.++++++.. +|..
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~----~~~~l~~~~~~~~~~~~a~~~~~~a~~~--------~p~~ 66 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQE-----PDNTG----VLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLL 66 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCc
Confidence 36888999999999999999998764 44433 4889999999999999999999999988 7888
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCh
Q 004829 351 GETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHEL 430 (728)
Q Consensus 351 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 430 (728)
..++..+|.+|...|++++|+..|++++.+.|.. ..++..+|.++...|++++|+..|.+++.. .|
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p 132 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF--------IDGYINLAAALVAAGDMEGAVQAYVSALQY------NP 132 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHSCSSHHHHHHHHHHHH------CT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcch--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC
Confidence 9999999999999999999999999999875443 346889999999999999999999999876 46
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCC
Q 004829 431 DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH 510 (728)
Q Consensus 431 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 510 (728)
....++..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.+|++++.+
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------ 198 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL------ 198 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence 66788999999999999999999999999998 7888899999999999999999999999999998
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829 511 GIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR 590 (728)
Q Consensus 511 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 590 (728)
.|....++..+|.++...|++++|+..|++++.+.+.. ..++..+|.+|...|++++|+..|++++++
T Consensus 199 ---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 266 (388)
T 1w3b_A 199 ---DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-------AVVHGNLACVYYEQGLIDLAIDTYRRAIEL-- 266 (388)
T ss_dssp ---CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--
T ss_pred ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence 33456789999999999999999999999999986554 567889999999999999999999999986
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004829 591 TSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVV 670 (728)
Q Consensus 591 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al 670 (728)
.+....++..+|.++...|++++|+.+|++++++ .|....++..+|.++...|++++|+.+|++++
T Consensus 267 ------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 267 ------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp ------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2334568999999999999999999999999998 77778899999999999999999999999998
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829 671 GMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNL 720 (728)
Q Consensus 671 ~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~ 720 (728)
+ .+|+...++..++.+|...|++++|+ ..++.+++.+|...
T Consensus 333 ~--------~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~p~~~ 373 (388)
T 1w3b_A 333 E--------VFPEFAAAHSNLASVLQQQGKLQEAL-MHYKEAIRISPTFA 373 (388)
T ss_dssp T--------SCTTCHHHHHHHHHHHHTTTCCHHHH-HHHHHHHTTCTTCH
T ss_pred h--------cCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCH
Confidence 7 35778889999999999999999999 99999999888643
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-32 Score=306.98 Aligned_cols=431 Identities=12% Similarity=0.086 Sum_probs=348.6
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhh
Q 004829 220 ALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLE 299 (728)
Q Consensus 220 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 299 (728)
.....+..++..+...| ++++|+.+|++++... |+. ..+..+|.+|...|++++|+..|++++...
T Consensus 82 ~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~---------p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 147 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQ-QYKCAAFVGEKVLDIT---------GNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYN--- 147 (597)
T ss_dssp CHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH---------CCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGG---
T ss_pred HHHHHHHHHHHHHHHcc-CchHHHHHHHHHHhhC---------CCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccc---
Confidence 45677889999999997 9999999999998642 222 456789999999999999999999987542
Q ss_pred cCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--------HHcCCCChHHHHHHHHHHHHHHHhCCHHHHH
Q 004829 300 DGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQR--------QVLGETDHRVGETCRYVAEAHVQSLQFDEAE 371 (728)
Q Consensus 300 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 371 (728)
.+ ..+++.++.+|...|++++|+..|++...... .......+....++..+|.+|...|++++|+
T Consensus 148 ---~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 148 ---RS----SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp ---TC----HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---cc----hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 22 23589999999999999999999985321100 0000012456889999999999999999999
Q ss_pred HHHHHHHHHHHHcCCC---------------------------------------------------------------C
Q 004829 372 KICQMALDIHRENTSP---------------------------------------------------------------A 388 (728)
Q Consensus 372 ~~~~~al~~~~~~~~~---------------------------------------------------------------~ 388 (728)
.+|++++...+..... .
T Consensus 221 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 300 (597)
T 2xpi_A 221 ECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300 (597)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc
Confidence 9999998765421100 0
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004829 389 SIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKG 468 (728)
Q Consensus 389 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 468 (728)
......++..++.++...|++++|+..|++++.. .+....++..++.++...|++++|+..+++++..
T Consensus 301 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 368 (597)
T 2xpi_A 301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR------ 368 (597)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh------
Confidence 0012345777888888888888888888887754 2334456778888888889999998888888876
Q ss_pred CCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 469 ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY 548 (728)
Q Consensus 469 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 548 (728)
.|....++..+|.+|...|++++|+.+|++++++. +....++..++.+|...|++++|+.+|++++...
T Consensus 369 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 369 --HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD---------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp --CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 67778889999999999999999999999999872 3345688999999999999999999999999875
Q ss_pred hcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829 549 GKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEAR 628 (728)
Q Consensus 549 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 628 (728)
+.. ..++..+|.+|...|++++|+.+|+++++. .+....++..+|.+|...|++++|+.+|++++
T Consensus 438 ~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 438 QGT-------HLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp TTC-------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 543 357788999999999999999999999976 12234679999999999999999999999999
Q ss_pred HHHHHhcCCCChh-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHH
Q 004829 629 TILEKEYGPYHHD-TLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSR 707 (728)
Q Consensus 629 ~~~~~~~~~~~~~-~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~ 707 (728)
++.... +.+|. ...++..+|.+|...|++++|+.+|++++++. |....++..++.+|...|++++|. .
T Consensus 503 ~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g~~~~A~-~ 571 (597)
T 2xpi_A 503 LLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--------TNDANVHTAIALVYLHKKIPGLAI-T 571 (597)
T ss_dssp HHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------SCCHHHHHHHHHHHHHTTCHHHHH-H
T ss_pred Hhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhCCHHHHH-H
Confidence 986543 22444 36799999999999999999999999999853 666789999999999999999999 9
Q ss_pred HHHHHHhhccccc
Q 004829 708 SLVTFLDSNSQNL 720 (728)
Q Consensus 708 ~l~~ll~~~~~~~ 720 (728)
.++.+++.+|+..
T Consensus 572 ~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 572 HLHESLAISPNEI 584 (597)
T ss_dssp HHHHHHHHCTTCH
T ss_pred HHHHHHhcCCCCh
Confidence 9999999988753
No 4
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-31 Score=293.39 Aligned_cols=392 Identities=13% Similarity=0.075 Sum_probs=329.7
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhc
Q 004829 221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLED 300 (728)
Q Consensus 221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 300 (728)
.+..++.+|..++..| +|++|+.+|++++... |+ ..++..+|.++...|++++|+..|++++++.
T Consensus 5 ~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~---------p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---- 69 (514)
T 2gw1_A 5 YALALKDKGNQFFRNK-KYDDAIKYYNWALELK---------ED-PVFYSNLSACYVSVGDLKKVVEMSTKALELK---- 69 (514)
T ss_dssp HHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHC---------CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhcC---------cc-HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC----
Confidence 4678999999999997 9999999999999862 22 5679999999999999999999999999875
Q ss_pred CCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-----------------------c--------------
Q 004829 301 GQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV-----------------------L-------------- 343 (728)
Q Consensus 301 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~-------------- 343 (728)
+..+ .+++.+|.+|..+|++++|+..|++++...+.. +
T Consensus 70 -p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 144 (514)
T 2gw1_A 70 -PDYS----KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELS 144 (514)
T ss_dssp -SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------
T ss_pred -hHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 4443 359999999999999999999999987653100 0
Q ss_pred ----------C------------------------CCChHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHcC-
Q 004829 344 ----------G------------------------ETDHRVGETCRYVAEAHVQ---SLQFDEAEKICQMALDIHRENT- 385 (728)
Q Consensus 344 ----------~------------------------~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~- 385 (728)
. -..|....++..+|.+++. .|++++|+.+|++++...+...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 224 (514)
T 2gw1_A 145 TQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc
Confidence 0 0002336777888888886 8999999999999998543332
Q ss_pred -CCCc----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004829 386 -SPAS----IEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKAL 460 (728)
Q Consensus 386 -~~~~----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 460 (728)
.+.. +..+.++..+|.++...|++++|+.+|++++.. .+. ..++..+|.++...|++++|+.+|++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL------FPR-VNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred cCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 2221 455678999999999999999999999999876 344 8899999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 004829 461 TAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKL 540 (728)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 540 (728)
.. .|....++..+|.++...|++++|+.+|++++.+... ...++..+|.++...|++++|+.+
T Consensus 298 ~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 298 KL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE---------NIFPYIQLACLAYRENKFDDCETL 360 (514)
T ss_dssp TT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS---------CSHHHHHHHHHTTTTTCHHHHHHH
T ss_pred hc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh---------hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 87 6667788999999999999999999999999987322 345889999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH---cCCH
Q 004829 541 LNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQ---RYTI 617 (728)
Q Consensus 541 ~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~ 617 (728)
|++++...+.. ..++..+|.++...|++++|+.+|++++.......... ....++..+|.++.. .|++
T Consensus 361 ~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~ 431 (514)
T 2gw1_A 361 FSEAKRKFPEA-------PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY--VGIAPLVGKATLLTRNPTVENF 431 (514)
T ss_dssp HHHHHHHSTTC-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS--SCSHHHHHHHHHHHTSCCTTHH
T ss_pred HHHHHHHcccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhhhhhcCCH
Confidence 99999886554 35778999999999999999999999998855432211 113488999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 618 NEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 618 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
++|+.+|++++.+ .|....++..+|.+|...|++++|+.+|++++.+.
T Consensus 432 ~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 432 IEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 9999999999998 77778899999999999999999999999999963
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-30 Score=294.17 Aligned_cols=408 Identities=14% Similarity=0.127 Sum_probs=336.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhh----
Q 004829 223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVL---- 298 (728)
Q Consensus 223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---- 298 (728)
..+..++..+...| ++++|+..|++++.. +....++..++.+|...|++++|+.+|++.......
T Consensus 118 ~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 186 (597)
T 2xpi_A 118 NDAFWLAQVYCCTG-DYARAKCLLTKEDLY----------NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNA 186 (597)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHTCGG----------GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC------
T ss_pred hHHHHHHHHHHHcC-cHHHHHHHHHHHhcc----------ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccc
Confidence 56678999999997 999999999988642 223557889999999999999999999974432100
Q ss_pred ---hcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH---------------------------------
Q 004829 299 ---EDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV--------------------------------- 342 (728)
Q Consensus 299 ---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------------- 342 (728)
............+++.+|.+|...|++++|+.+|++++...+..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (597)
T 2xpi_A 187 NKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266 (597)
T ss_dssp ----CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG
T ss_pred ccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccc
Confidence 00000001134579999999999999999999999988653210
Q ss_pred ----------------------------cC--CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHH
Q 004829 343 ----------------------------LG--ETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEE 392 (728)
Q Consensus 343 ----------------------------~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 392 (728)
+. ...|....++..++.+|...|++++|+.+|++++...+....
T Consensus 267 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------ 340 (597)
T 2xpi_A 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD------ 340 (597)
T ss_dssp GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCT------
T ss_pred hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHH------
Confidence 00 001244567888999999999999999999999987655332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 004829 393 AADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP 472 (728)
Q Consensus 393 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 472 (728)
++..++.++...|++++|+..+.+++.. .+....++..+|.+|...|++++|+.+|++++++ .|
T Consensus 341 --~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~ 404 (597)
T 2xpi_A 341 --VYPLHLASLHESGEKNKLYLISNDLVDR------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DP 404 (597)
T ss_dssp --THHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHhh------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CC
Confidence 4788999999999999999999998754 3556788999999999999999999999999997 77
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004829 473 AVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTP 552 (728)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 552 (728)
....++..++.+|...|++++|+.+|++++.... ....++..+|.+|...|++++|+.+|++++++.+..
T Consensus 405 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~- 474 (597)
T 2xpi_A 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ---------GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD- 474 (597)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT---------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC-
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Confidence 7788999999999999999999999999998732 235678899999999999999999999999875543
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829 553 GQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILE 632 (728)
Q Consensus 553 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 632 (728)
..++..+|.+|...|++++|+.+|+++++.....+.. +.....++..+|.+|...|++++|+.+|++++++
T Consensus 475 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 545 (597)
T 2xpi_A 475 ------PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN-EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL-- 545 (597)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred ------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc-hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 4678899999999999999999999999987765433 2223678999999999999999999999999998
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Q 004829 633 KEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLK 696 (728)
Q Consensus 633 ~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~ 696 (728)
.|....++..+|.+|...|++++|+.+|++++++ +|+...++..|+.+|.
T Consensus 546 ------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 546 ------STNDANVHTAIALVYLHKKIPGLAITHLHESLAI--------SPNEIMASDLLKRALE 595 (597)
T ss_dssp ------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTC
T ss_pred ------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHh
Confidence 6777789999999999999999999999999995 3777788888888764
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-31 Score=293.32 Aligned_cols=393 Identities=16% Similarity=0.100 Sum_probs=329.6
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcC
Q 004829 265 QVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLG 344 (728)
Q Consensus 265 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 344 (728)
.+..+..+|.+++..|+|++|+..|++++... ++ ..++..+|.+|...|++++|+.+|+++++.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 68 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK-----ED-----PVFYSNLSACYVSVGDLKKVVEMSTKALEL------ 68 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----CC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cc-----HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc------
Confidence 46778999999999999999999999999875 22 235999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCC------------------------------------
Q 004829 345 ETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA------------------------------------ 388 (728)
Q Consensus 345 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------------ 388 (728)
.|....++..+|.+|...|++++|+..|++++...+......
T Consensus 69 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 146 (514)
T 2gw1_A 69 --KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ 146 (514)
T ss_dssp --CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred --ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Confidence 788889999999999999999999999999976543110000
Q ss_pred -----------------------------------cHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHh----c
Q 004829 389 -----------------------------------SIEEAADRRLMGLICDS---KGDYEAALEHYVLASMSMAA----N 426 (728)
Q Consensus 389 -----------------------------------~~~~a~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~----~ 426 (728)
.+.....+..+|.++.. .|++++|+.+|.+++..... .
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 226 (514)
T 2gw1_A 147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC
Confidence 00114556778887776 89999999999999874311 1
Q ss_pred CC----ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004829 427 GH----ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENAL 502 (728)
Q Consensus 427 ~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 502 (728)
+. .+....++..+|.++...|++++|+.+|++++.. .|. ..++..+|.++...|++++|+.++++++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred ccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 22 2677889999999999999999999999999998 566 8899999999999999999999999998
Q ss_pred HHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829 503 KIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTL 582 (728)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 582 (728)
... +....++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.++
T Consensus 298 ~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~ 361 (514)
T 2gw1_A 298 KLD---------SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN-------IFPYIQLACLAYRENKFDDCETLF 361 (514)
T ss_dssp TTC---------TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC-------SHHHHHHHHHTTTTTCHHHHHHHH
T ss_pred hcC---------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh-------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 873 2234678999999999999999999999999875543 357789999999999999999999
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH---cCCh
Q 004829 583 KSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA---MGRI 659 (728)
Q Consensus 583 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~---~g~~ 659 (728)
++++... +....++..+|.++...|++++|+.+|++++.+..... .......++..+|.++.. .|++
T Consensus 362 ~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 431 (514)
T 2gw1_A 362 SEAKRKF--------PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD--GIYVGIAPLVGKATLLTRNPTVENF 431 (514)
T ss_dssp HHHHHHS--------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS--SCSSCSHHHHHHHHHHHTSCCTTHH
T ss_pred HHHHHHc--------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHhhhhhcCCH
Confidence 9999872 22346889999999999999999999999999832210 000113388999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccc
Q 004829 660 DDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN 719 (728)
Q Consensus 660 ~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~ 719 (728)
++|+.+|++++.+ +|....++..+|.+|...|++++|+ ..++.+++..|..
T Consensus 432 ~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 432 IEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAI-TLFEESADLARTM 482 (514)
T ss_dssp HHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhcccc
Confidence 9999999999985 3666788999999999999999999 9999999988864
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=2.5e-30 Score=287.54 Aligned_cols=392 Identities=13% Similarity=0.112 Sum_probs=315.9
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhh
Q 004829 220 ALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLE 299 (728)
Q Consensus 220 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 299 (728)
..+..++.+|..++..| ++++|+.+|++++... |....++..+|.+|..+|++++|+..|++++.+.
T Consensus 23 ~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 89 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAK-NFNEAIKYYQYAIELD---------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--- 89 (537)
T ss_dssp HHHHHHHHHHHHHHHTT-CCC-CHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhC---------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence 35788999999999997 9999999999999862 4457789999999999999999999999999875
Q ss_pred cCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH------------------------HHcCC----------
Q 004829 300 DGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQR------------------------QVLGE---------- 345 (728)
Q Consensus 300 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------------------~~~~~---------- 345 (728)
+..+ .+++.+|.+|...|++++|+..|+ ++.... ..+..
T Consensus 90 --p~~~----~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ 162 (537)
T 3fp2_A 90 --PDHS----KALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLP 162 (537)
T ss_dssp --TTCH----HHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCC
T ss_pred --CchH----HHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 4443 359999999999999999999995 543321 11110
Q ss_pred --------------------------CChHHHHHHHHHH--------HHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829 346 --------------------------TDHRVGETCRYVA--------EAHVQSLQFDEAEKICQMALDIHRENTSPASIE 391 (728)
Q Consensus 346 --------------------------~~~~~~~~~~~la--------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 391 (728)
..+........++ ......|++++|+..|++++...+.... ....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~-~~~~ 241 (537)
T 3fp2_A 163 SNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDP-LREN 241 (537)
T ss_dssp CHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHH-HHHH
T ss_pred hHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcch-hhHH
Confidence 0000001122222 2223345788888888888766544311 1123
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829 392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH 471 (728)
Q Consensus 392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 471 (728)
.+.++..+|.++...|++++|+..|.+++.. .|. ..++..+|.++...|++++|+.+|++++.. .
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~ 306 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINL------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL--------N 306 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc--------C
Confidence 4567899999999999999999999999876 344 678999999999999999999999999998 7
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829 472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 472 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 551 (728)
|....++..+|.++...|++++|+.+|++++.+.. ....++..+|.++...|++++|+.+|+++++..+..
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 377 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP---------ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 77788999999999999999999999999999832 234678999999999999999999999999986554
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc----------CCHHHHH
Q 004829 552 PGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR----------YTINEAA 621 (728)
Q Consensus 552 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~ 621 (728)
..++..+|.++...|++++|+.+|++++........... ....+..+|.++... |++++|+
T Consensus 378 -------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~ 448 (537)
T 3fp2_A 378 -------PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV--GIGPLIGKATILARQSSQDPTQLDEEKFNAAI 448 (537)
T ss_dssp -------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS--TTHHHHHHHHHHHHHHTC----CCHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH--HHHHHHHHHHHHHHHhhccchhhhHhHHHHHH
Confidence 357789999999999999999999999998766543322 123467788999999 9999999
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 622 DLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 622 ~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
.+|++++.+ +|....++..+|.+|..+|++++|+.+|++++++.
T Consensus 449 ~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 449 KLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999998 77778899999999999999999999999999965
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.98 E-value=4.3e-30 Score=285.68 Aligned_cols=392 Identities=14% Similarity=0.116 Sum_probs=312.4
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHc
Q 004829 264 EQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVL 343 (728)
Q Consensus 264 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 343 (728)
..+..+..+|..++..|++++|+.+|++++... +..+ .++..+|.+|..+|++++|+..|++++.+
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 88 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-----PNEP----VFYSNISACYISTGDLEKVIEFTTKALEI----- 88 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----CCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence 357789999999999999999999999999875 4443 35999999999999999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCc---------------------------------H
Q 004829 344 GETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPAS---------------------------------I 390 (728)
Q Consensus 344 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------------------------~ 390 (728)
+|....++..+|.++...|++++|+..|+ ++.+.+....... .
T Consensus 89 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 164 (537)
T 3fp2_A 89 ---KPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN 164 (537)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred ---CCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH
Confidence 78888999999999999999999999995 5544433221100 0
Q ss_pred HH---------------------------HHHHHHHH--------HHHHHcCCHHHHHHHHHHHHHHHHhcCCCh----h
Q 004829 391 EE---------------------------AADRRLMG--------LICDSKGDYEAALEHYVLASMSMAANGHEL----D 431 (728)
Q Consensus 391 ~~---------------------------a~~~~~lg--------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~ 431 (728)
.. ......++ ......|++++|+..|++++... +..+ .
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~---p~~~~~~~~ 241 (537)
T 3fp2_A 165 TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN---TVDDPLREN 241 (537)
T ss_dssp HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHH
T ss_pred hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC---CCcchhhHH
Confidence 00 00111222 22223356777777777766432 2222 2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC
Q 004829 432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG 511 (728)
Q Consensus 432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 511 (728)
.+.++..+|.++...|++++|+.+|++++.. .|. ..++..+|.++...|++++|+.+|++++...
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------ 306 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLN------ 306 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccC------
Confidence 3667899999999999999999999999998 666 7889999999999999999999999999983
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT 591 (728)
Q Consensus 512 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 591 (728)
+....++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++..
T Consensus 307 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 373 (537)
T 3fp2_A 307 ---PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN-------VYPYIQLACLLYKQGKFTESEAFFNETKLK--- 373 (537)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 3346789999999999999999999999999986654 357889999999999999999999999987
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc----------CChHH
Q 004829 592 SGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM----------GRIDD 661 (728)
Q Consensus 592 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~----------g~~~~ 661 (728)
.+....++..+|.++...|++++|+.+|++++.+...... .......+..+|.++... |++++
T Consensus 374 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 446 (537)
T 3fp2_A 374 -----FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK--IHVGIGPLIGKATILARQSSQDPTQLDEEKFNA 446 (537)
T ss_dssp -----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS--CSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred -----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh--hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH
Confidence 2223468889999999999999999999999998544321 112233567888999999 99999
Q ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829 662 AIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNL 720 (728)
Q Consensus 662 A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~ 720 (728)
|+.+|++++.+ +|....++..+|.+|..+|++++|+ ..++.+++..|...
T Consensus 447 A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 447 AIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAI-ELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHC--CH
T ss_pred HHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCCCcH
Confidence 99999999985 4667788999999999999999999 99999999887643
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=1.2e-29 Score=275.50 Aligned_cols=401 Identities=14% Similarity=0.124 Sum_probs=298.4
Q ss_pred ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHH
Q 004829 209 EDPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPV 288 (728)
Q Consensus 209 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 288 (728)
..+......+|..+..++.+|..++..| ++++|+.+|++++... |....++..+|.+|...|++++|+.+
T Consensus 13 ~~~~~~~~~~p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~---------p~~~~~~~~l~~~~~~~g~~~~A~~~ 82 (450)
T 2y4t_A 13 LGTENLYFQSMADVEKHLELGKKLLAAG-QLADALSQFHAAVDGD---------PDNYIAYYRRATVFLAMGKSKAALPD 82 (450)
T ss_dssp ----------CHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC---------CccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4555667788899999999999999997 8999999999998751 34467788899999999999999999
Q ss_pred HHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHH---HHHHHHHHHHHHhC
Q 004829 289 LERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVG---ETCRYVAEAHVQSL 365 (728)
Q Consensus 289 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~~~g 365 (728)
|++++.+. +..+ .++..+|.+|...|++++|+.+|++++.. .|... .++..++.++.
T Consensus 83 ~~~al~~~-----p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~--- 142 (450)
T 2y4t_A 83 LTKVIQLK-----MDFT----AARLQRGHLLLKQGKLDEAEDDFKKVLKS--------NPSENEEKEAQSQLIKSDE--- 142 (450)
T ss_dssp HHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHH---
T ss_pred HHHHHhcC-----CCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHHH---
Confidence 99998874 3332 35889999999999999999999998876 55555 56655554421
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 004829 366 QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLS 445 (728)
Q Consensus 366 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 445 (728)
...+..+|.++...|++++|+.+|++++.. .|....++..+|.+|..
T Consensus 143 ---------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~ 189 (450)
T 2y4t_A 143 ---------------------------MQRLRSQALNAFGSGDYTAAIAFLDKILEV------CVWDAELRELRAECFIK 189 (450)
T ss_dssp ---------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHH
Confidence 112445677777888888888888887765 34556778888888888
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHH-----
Q 004829 446 LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASG----- 520 (728)
Q Consensus 446 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~----- 520 (728)
.|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++.+... .......
T Consensus 190 ~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~~~~~~ 255 (450)
T 2y4t_A 190 EGEPRKAISDLKAASKL--------KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD------HKRCFAHYKQVK 255 (450)
T ss_dssp TTCGGGGHHHHHHHHHH--------HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------hHHHHHHHHHHH
Confidence 88888888888888877 4555677888888888888888888888888877322 2222222
Q ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004829 521 ----LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK 596 (728)
Q Consensus 521 ----~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 596 (728)
+..+|.++...|++++|+.+|++++.+.+.. ......++..+|.++...|++++|+.++++++.+
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-------- 324 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI---AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-------- 324 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS---HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 2445999999999999999999999875432 2233567889999999999999999999999987
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH------------HHHcC-----Ch
Q 004829 597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGT------------YDAMG-----RI 659 (728)
Q Consensus 597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~------------~~~~g-----~~ 659 (728)
.+....++..+|.++...|++++|+.+|++++++ .|....++..++.+ |..+| +.
T Consensus 325 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~ 396 (450)
T 2y4t_A 325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--------NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence 3334578999999999999999999999999998 77777788888844 45555 56
Q ss_pred HHHHHHHHH-HHHHHHHHcCCCC--hHHHHHHHHHHHHHHHhCChhHHH
Q 004829 660 DDAIEILEY-VVGMREEKLGTAN--PDVEDEKRRLAELLKEAGRVRNRK 705 (728)
Q Consensus 660 ~~A~~~~~~-al~~~~~~~~~~~--p~~~~~~~~La~~~~~~g~~~~A~ 705 (728)
+++...|++ ++........... ......+..++..|..+|+.+++.
T Consensus 397 ~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 397 QEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp THHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 677888886 5542111110000 123457778889999999888765
No 10
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=2e-29 Score=275.63 Aligned_cols=411 Identities=14% Similarity=0.063 Sum_probs=291.1
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHH
Q 004829 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGD 317 (728)
Q Consensus 238 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~ 317 (728)
+.+.++..+++.+..... ..++...+.+|+.||.++..+|++++|+++|++|+++.+...+.......+.++.++|.
T Consensus 26 ~~~~~l~~~e~~~~~~~~---~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~ 102 (472)
T 4g1t_A 26 EGENSLDDFEDKVFYRTE---FQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAW 102 (472)
T ss_dssp TTCCCHHHHHHHHHHHTT---SCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---hCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 344455555555443221 22334446778999999999999999999999999987644333222223456899999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHcCCCCcHHHHHH
Q 004829 318 TYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQS--LQFDEAEKICQMALDIHRENTSPASIEEAAD 395 (728)
Q Consensus 318 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~ 395 (728)
+|..+|++++|+.+|++++.+.+...+..++..+.++..+|.++... ++|++|+.+|++++.+.|... .+
T Consensus 103 ~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~--------~~ 174 (472)
T 4g1t_A 103 VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP--------EF 174 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH--------HH
T ss_pred HHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH--------HH
Confidence 99999999999999999999998877766777788888888877765 479999999999999876532 24
Q ss_pred HHHHHHHH---HHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcC
Q 004829 396 RRLMGLIC---DSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLS----LARFDEAIFSYHKALTAFKSAKG 468 (728)
Q Consensus 396 ~~~lg~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 468 (728)
+..++.++ ...++.++|++.|++++.+ .|....++..+|..+.. .|++++|+.++++++..
T Consensus 175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------ 242 (472)
T 4g1t_A 175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRL------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK------ 242 (472)
T ss_dssp HHHHHHHHHHHHHSCCCCCTHHHHHHHHHH------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhc------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh------
Confidence 55566554 4567889999999999876 45556667777766554 56788999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHc-----------------
Q 004829 469 ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSM----------------- 531 (728)
Q Consensus 469 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----------------- 531 (728)
.|....++..+|.+|...|++++|+.+|++++++ .|....++..+|.+|...
T Consensus 243 --~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~ 311 (472)
T 4g1t_A 243 --APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY---------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311 (472)
T ss_dssp --CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------STTCHHHHHHHHHHHHHHHHHHHHC------CHHH
T ss_pred --CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7888889999999999999999999999999998 344567888888887643
Q ss_pred --CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 004829 532 --NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGL 609 (728)
Q Consensus 532 --g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 609 (728)
+.+++|+.+|++++.+.+.. ..++..+|.+|...|++++|+.+|++++.+ ...+.....++..+|.
T Consensus 312 ~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-----~~~~~~~~~~~~~~~~ 379 (472)
T 4g1t_A 312 LLELIGHAVAHLKKADEANDNL-------FRVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGN 379 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTT-------CCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHhhcCCch-------hhhhhhHHHHHHHhccHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHH
Confidence 33567778888887776554 235678999999999999999999999875 2223333445666775
Q ss_pred H-HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 004829 610 A-CVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEK 688 (728)
Q Consensus 610 ~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~ 688 (728)
+ +...|++++|+.+|++++.+ .|...... +....+..++++++. .+|..+.++
T Consensus 380 ~~~~~~~~~~~Ai~~y~kal~i--------~~~~~~~~----------~~~~~l~~~~~~~l~--------~~p~~~~~~ 433 (472)
T 4g1t_A 380 FQLYQMKCEDKAIHHFIEGVKI--------NQKSREKE----------KMKDKLQKIAKMRLS--------KNGADSEAL 433 (472)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHS--------CCCCHHHH----------HHHHHHHHHHHHHHH--------HCC-CTTHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhc--------CcccHHHH----------HHHHHHHHHHHHHHH--------hCCCCHHHH
Confidence 4 45779999999999999987 44432211 112334455556655 357778889
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829 689 RRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK 721 (728)
Q Consensus 689 ~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~ 721 (728)
..||.+|..+|++++|+ .+++++++..+.+.+
T Consensus 434 ~~LG~~~~~~g~~~~A~-~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 434 HVLAFLQELNEKMQQAD-EDSERGLESGSLIPS 465 (472)
T ss_dssp HHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCCc
Confidence 99999999999999999 999999988777554
No 11
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=4.5e-30 Score=280.75 Aligned_cols=386 Identities=13% Similarity=0.023 Sum_probs=287.2
Q ss_pred CCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhh
Q 004829 217 GNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIP 296 (728)
Q Consensus 217 ~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 296 (728)
+++..+..+..+|..+...| ++++|+++|++|+.+.+.......++..+.++.++|.+|..+|++++|+.+|++++.+.
T Consensus 46 ~~~~~a~~yn~Lg~~~~~~G-~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKHLKG-QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp C---CCHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 44556788889999999998 99999999999999998876555567788899999999999999999999999999987
Q ss_pred hhhcCCchhHhHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH---hCCHHHHH
Q 004829 297 VLEDGQDHALAKFAGCMQLGDTYAML--GQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ---SLQFDEAE 371 (728)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~ 371 (728)
+...++.++. ...++..+|.++... ++|++|+.+|++++++ +|....++..++.++.. .+++++|+
T Consensus 125 ~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--------~p~~~~~~~~~~~~~~~l~~~~~~~~al 195 (472)
T 4g1t_A 125 EKFSSPYRIE-SPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--------KPKNPEFTSGLAIASYRLDNWPPSQNAI 195 (472)
T ss_dssp HHSCCSSCCC-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHSCCCCCTH
T ss_pred Hhcccccchh-hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCchHHHHHH
Confidence 6554443322 234577888877765 4799999999999999 67777788888877554 56778999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhC
Q 004829 372 KICQMALDIHRENTSPASIEEAADRRLMGLICD----SKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLA 447 (728)
Q Consensus 372 ~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 447 (728)
..+++++.+.+.. ..++..+|..+. ..|++++|+.+|++++.. .|....++..+|.+|...|
T Consensus 196 ~~~~~al~l~p~~--------~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------~~~~~~~~~~lg~~~~~~~ 261 (472)
T 4g1t_A 196 DPLRQAIRLNPDN--------QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK------APGVTDVLRSAAKFYRRKD 261 (472)
T ss_dssp HHHHHHHHHCSSC--------HHHHHHHHHHHHHCC------CHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCCcc--------hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh------CccHHHHHHHHHHHHHHcC
Confidence 9999999875433 224555665544 456788999999998866 5667788999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-------------------CChHHHHHHHHHHHHHHcCC
Q 004829 448 RFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKI-------------------GKLRDSKSYCENALKIYGKP 508 (728)
Q Consensus 448 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~~~~ 508 (728)
++++|+..|+++++. +|....++..+|.+|... +.+++|+.++++++.+.
T Consensus 262 ~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--- 330 (472)
T 4g1t_A 262 EPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN--- 330 (472)
T ss_dssp CHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC---
Confidence 999999999999998 888889999999988653 33677888888888873
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q 004829 509 NHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVM-YYMTGNYSDSYNTLKSAIS 587 (728)
Q Consensus 509 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~ 587 (728)
+....++..+|.+|...|++++|+.+|++++.+.+. ......++..+|.+ +...|++++|+.+|++++.
T Consensus 331 ------~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 331 ------DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT----PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp ------TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred ------CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 334567889999999999999999999999976322 11223445566654 4578999999999999998
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004829 588 KFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILE 667 (728)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~ 667 (728)
+. +.... ..+....+..++++++.. +|..+.++..||.+|..+|++++|+++|+
T Consensus 401 i~-----~~~~~-------------~~~~~~~l~~~~~~~l~~--------~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 401 IN-----QKSRE-------------KEKMKDKLQKIAKMRLSK--------NGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp SC-----CCCHH-------------HHHHHHHHHHHHHHHHHH--------CC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred cC-----cccHH-------------HHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 62 11111 111234455667777776 78888899999999999999999999999
Q ss_pred HHHHHH
Q 004829 668 YVVGMR 673 (728)
Q Consensus 668 ~al~~~ 673 (728)
+|+++.
T Consensus 455 kALe~~ 460 (472)
T 4g1t_A 455 RGLESG 460 (472)
T ss_dssp ------
T ss_pred HHHhcC
Confidence 999864
No 12
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.97 E-value=6.6e-28 Score=257.56 Aligned_cols=344 Identities=14% Similarity=0.126 Sum_probs=298.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCC
Q 004829 309 FAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA 388 (728)
Q Consensus 309 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 388 (728)
+..+..+|.++...|++++|+.+|++++... ..+.+....++..+|.++...|++++|+.++++++.+.+... .
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~ 82 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--D 82 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--c
Confidence 3458899999999999999999999999982 112223467899999999999999999999999999988765 3
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCC--------------------
Q 004829 389 SIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLAR-------------------- 448 (728)
Q Consensus 389 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------- 448 (728)
....+.++..+|.++...|++++|+.++.+++.+....++....+.++..+|.+|...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 455677899999999999999999999999999988888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHH
Q 004829 449 FDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIY 528 (728)
Q Consensus 449 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 528 (728)
+++|+.++.+++.+.... .+.+....++..+|.+|...|++++|+.++++++.+..... +....+.++..+|.+|
T Consensus 163 ~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG---DKAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHH
Confidence 999999999999998876 45778889999999999999999999999999999987643 4566788999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 004829 529 QSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMG 608 (728)
Q Consensus 529 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 608 (728)
...|++++|+.+|++++.+.+.. +.......++..+|.+|...|++++|+.+|++++.+....+. ......++..+|
T Consensus 238 ~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la 314 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND--RIGEGRACWSLG 314 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhC-cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHH
Confidence 99999999999999999999886 455566788999999999999999999999999999887654 355678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004829 609 LACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEY 668 (728)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~ 668 (728)
.+|...|++++|+.+|++++++..... ..+....++..+|.++...|+...+...+.+
T Consensus 315 ~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 372 (406)
T 3sf4_A 315 NAYTALGNHDQAMHFAEKHLEISREVG--DKSGELTARLNLSDLQMVLGLSYSTNNSIMS 372 (406)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHTTSCC------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhc--CCcchhHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 999999999999999999999987763 2567788999999999999987544443333
No 13
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.97 E-value=6.5e-28 Score=257.62 Aligned_cols=344 Identities=17% Similarity=0.199 Sum_probs=300.0
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcC
Q 004829 265 QVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLG 344 (728)
Q Consensus 265 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 344 (728)
.+.++..+|.+++..|++++|+.+|++++.+. +..+.....++..+|.+|...|++++|+.+|++++.+....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-- 80 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-- 80 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--
Confidence 35668889999999999999999999999874 44544456679999999999999999999999999998764
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCC----------------
Q 004829 345 ETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGD---------------- 408 (728)
Q Consensus 345 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~---------------- 408 (728)
.+.+....++..+|.+|...|++++|+.++++++.+.+.... ....+.++..+|.++...|+
T Consensus 81 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 81 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence 345677889999999999999999999999999999988764 34567789999999999999
Q ss_pred ----HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004829 409 ----YEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADL 484 (728)
Q Consensus 409 ----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 484 (728)
+++|+.++.+++.+....++.+..+.++..+|.+|...|++++|+.++++++.+.... .+.+....++..+|.+
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHH
Confidence 9999999999999998888888999999999999999999999999999999998875 3456677899999999
Q ss_pred HHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Q 004829 485 YHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQ 564 (728)
Q Consensus 485 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 564 (728)
|...|++++|+.++++++.+..... +......++..+|.+|...|++++|+.+|++++.+.+.. +.......++..
T Consensus 237 ~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~ 312 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTLLLARQLK---DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-NDRIGEGRACWS 312 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHhCc---CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHH
Confidence 9999999999999999999987643 456678899999999999999999999999999998887 555566788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829 565 MGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFE 625 (728)
Q Consensus 565 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 625 (728)
+|.+|...|++++|+.+|++++++....+. ......++..+|.++...|+...+...+.
T Consensus 313 la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 371 (406)
T 3sf4_A 313 LGNAYTALGNHDQAMHFAEKHLEISREVGD--KSGELTARLNLSDLQMVLGLSYSTNNSIM 371 (406)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 999999999999999999999999988764 34567889999999999987654443333
No 14
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=4.7e-28 Score=262.89 Aligned_cols=353 Identities=15% Similarity=0.105 Sum_probs=289.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCC
Q 004829 309 FAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA 388 (728)
Q Consensus 309 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 388 (728)
...++.+|..|...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++.+.+..
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---- 93 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF---- 93 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----
Confidence 456999999999999999999999999988 67788999999999999999999999999999876443
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHH---HH------------HHHHHHHHHHhCCHHHHH
Q 004829 389 SIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVA---SI------------DCSIGDAYLSLARFDEAI 453 (728)
Q Consensus 389 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~------------~~~la~~~~~~g~~~~A~ 453 (728)
..++..+|.++...|++++|+..|++++.. .|... .+ +..+|.++...|++++|+
T Consensus 94 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 94 ----TAARLQRGHLLLKQGKLDEAEDDFKKVLKS------NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 356899999999999999999999998753 23222 33 345578899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCC
Q 004829 454 FSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNE 533 (728)
Q Consensus 454 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 533 (728)
.+|++++.. .|....++..+|.+|...|++++|+.+|++++..... ...++..+|.+|...|+
T Consensus 164 ~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 164 AFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND---------NTEAFYKISTLYYQLGD 226 (450)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS---------CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHh--------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCC
Confidence 999999998 7777889999999999999999999999999998432 45789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCc-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 004829 534 LEQAVKLLNKALKIYGKTPGQQST-----IAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMG 608 (728)
Q Consensus 534 ~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 608 (728)
+++|+.+|++++.+.+........ .......+|.++...|++++|+.+|++++.+ .+..+.....++..+|
T Consensus 227 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT----EPSIAEYTVRSKERIC 302 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCcchHHHHHHHHHHH
Confidence 999999999999875543100000 0001233499999999999999999999986 2223333456899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 004829 609 LACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEK 688 (728)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~ 688 (728)
.++...|++++|+.+|++++.+ +|....++..+|.+|...|++++|+.+|++++++ +|+...++
T Consensus 303 ~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~ 366 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--------NENDQQIR 366 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcchHHHH
Confidence 9999999999999999999998 7777889999999999999999999999999984 36666777
Q ss_pred HHHHHH------------HHHhC-----ChhHHHHHHHH-HHHhhcccccc
Q 004829 689 RRLAEL------------LKEAG-----RVRNRKSRSLV-TFLDSNSQNLK 721 (728)
Q Consensus 689 ~~La~~------------~~~~g-----~~~~A~~~~l~-~ll~~~~~~~~ 721 (728)
..++.+ |...| +.+++. +.++ ..+..+|+...
T Consensus 367 ~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~-~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 367 EGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII-KAYRKLALQWHPDNFQ 416 (450)
T ss_dssp HHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH-HHHHHHHHHSCGGGCC
T ss_pred HHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH-HHHHHHHHHhCCCCCC
Confidence 777744 44455 455566 5455 46777777653
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=1.1e-27 Score=251.01 Aligned_cols=332 Identities=14% Similarity=0.107 Sum_probs=279.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCC
Q 004829 309 FAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA 388 (728)
Q Consensus 309 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 388 (728)
+..++.+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+..+++++.+.+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---- 70 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF---- 70 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----
Confidence 345899999999999999999999999998 77788999999999999999999999999999875432
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCh---hHHHHHHHH------------HHHHHHhCCHHHHH
Q 004829 389 SIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHEL---DVASIDCSI------------GDAYLSLARFDEAI 453 (728)
Q Consensus 389 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~l------------a~~~~~~g~~~~A~ 453 (728)
..++..+|.++...|++++|+..|++++.. .| ....++..+ |.++...|++++|+
T Consensus 71 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 71 ----TAARLQRGHLLLKQGKLDEAEDDFKKVLKS------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----chHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 246899999999999999999999998754 34 455555555 79999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCC
Q 004829 454 FSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNE 533 (728)
Q Consensus 454 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 533 (728)
.++++++.. .|....++..+|.++...|++++|+.++++++... |....++..+|.++...|+
T Consensus 141 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 141 TFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK---------SDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------SCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCC
Confidence 999999998 77778899999999999999999999999999873 2345789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 004829 534 LEQAVKLLNKALKIYGKTPGQQSTI-----AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMG 608 (728)
Q Consensus 534 ~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 608 (728)
+++|+..|+++++..+......... ......+|.++...|++++|+.++++++... +........++..+|
T Consensus 204 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~la 279 (359)
T 3ieg_A 204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSVAEYTVRSKERIC 279 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHH
Confidence 9999999999998865541100000 0112355899999999999999999999863 223333456688899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 004829 609 LACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEK 688 (728)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~ 688 (728)
.++...|++++|+.+|++++++ +|....++..+|.+|...|++++|+.+|++++++ +|+...++
T Consensus 280 ~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~ 343 (359)
T 3ieg_A 280 HCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NENDQQIR 343 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHH
Confidence 9999999999999999999998 7777889999999999999999999999999984 46666777
Q ss_pred HHHHHHHHHhC
Q 004829 689 RRLAELLKEAG 699 (728)
Q Consensus 689 ~~La~~~~~~g 699 (728)
..|+.++..++
T Consensus 344 ~~l~~~~~~~~ 354 (359)
T 3ieg_A 344 EGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=2e-27 Score=249.00 Aligned_cols=336 Identities=14% Similarity=0.094 Sum_probs=278.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829 266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE 345 (728)
Q Consensus 266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 345 (728)
+..+..+|.+++..|++++|+..|++++... +..+ .+++.+|.++...|++++|+.+|++++..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 66 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-----PDNY----IAYYRRATVFLAMGKSKAALPDLTKVIAL------- 66 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----cccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence 4568899999999999999999999999875 3333 35999999999999999999999999998
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH---HcCCCC----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829 346 TDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHR---ENTSPA----SIEEAADRRLMGLICDSKGDYEAALEHYVL 418 (728)
Q Consensus 346 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 418 (728)
.|....++..+|.++...|++++|+..|++++.+.+ ...... .......+..+|.++...|++++|+..+.+
T Consensus 67 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 145 (359)
T 3ieg_A 67 -KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK 145 (359)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 677779999999999999999999999999997654 321100 000011223448999999999999999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 004829 419 ASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYC 498 (728)
Q Consensus 419 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 498 (728)
++.. .|....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++
T Consensus 146 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 146 ILEV------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp HHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHh------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9876 4555788999999999999999999999999987 6777889999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCcHHHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 004829 499 ENALKIYGKPNHGIPSEEIASG---------LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMY 569 (728)
Q Consensus 499 ~~al~~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~ 569 (728)
+++++.... .+..... ...+|.++...|++++|+..|++++...+.. ......++..+|.++
T Consensus 212 ~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 212 RECLKLDQD------HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSV---AEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHCTT------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS---HHHHHHHHHHHHHHH
T ss_pred HHHHhhCcc------chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHHH
Confidence 999998433 3332222 3455899999999999999999999886542 223345677899999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004829 570 YMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNL 649 (728)
Q Consensus 570 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~L 649 (728)
...|++++|+.+|+++++. .+....++..+|.++...|++++|+.+|++++++ +|+...++..|
T Consensus 283 ~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l 346 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NENDQQIREGL 346 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHH
Confidence 9999999999999999987 2334578999999999999999999999999998 77777788888
Q ss_pred HHHHHHcC
Q 004829 650 AGTYDAMG 657 (728)
Q Consensus 650 a~~~~~~g 657 (728)
+.++..++
T Consensus 347 ~~~~~~~~ 354 (359)
T 3ieg_A 347 EKAQRLLK 354 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776544
No 17
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.96 E-value=2.2e-26 Score=246.56 Aligned_cols=314 Identities=16% Similarity=0.195 Sum_probs=278.2
Q ss_pred hhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004829 263 LEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV 342 (728)
Q Consensus 263 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 342 (728)
+..+..+..+|..++..|++++|+.+|++++.+. +.++.....++..+|.+|...|++++|+.+|++++.+....
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 119 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG-----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 4556678889999999999999999999999874 44554455679999999999999999999999999998765
Q ss_pred cCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCC--------------
Q 004829 343 LGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGD-------------- 408 (728)
Q Consensus 343 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~-------------- 408 (728)
.+.+....++..+|.+|...|++++|+.++++++.+.+... +....+.++..+|.++...|+
T Consensus 120 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 120 --NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred --cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence 34578889999999999999999999999999999988765 345567789999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 004829 409 ---YEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLY 485 (728)
Q Consensus 409 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 485 (728)
+++|+.++.+++.+....++.+....++..+|.+|...|++++|+.+|++++.+.... .+......++..+|.+|
T Consensus 196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHH
Confidence 9999999999999988888888889999999999999999999999999999998775 34566677999999999
Q ss_pred HHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 004829 486 HKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQM 565 (728)
Q Consensus 486 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 565 (728)
...|++++|+.+|++++.+..... +......++..+|.+|...|++++|+.+|++++.+.+.. +.......++..+
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l 349 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVELG---EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL-GDRIGEARACWSL 349 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-CChHHHHHHHHHH
Confidence 999999999999999999987642 355678899999999999999999999999999998876 4455667789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 566 GVMYYMTGNYSDSYNTLKSAISKFRT 591 (728)
Q Consensus 566 a~~~~~~g~~~~A~~~~~~al~~~~~ 591 (728)
|.+|..+|++++|+.+|++++++.+.
T Consensus 350 a~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 350 GNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998544
No 18
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.96 E-value=4.7e-26 Score=244.01 Aligned_cols=315 Identities=15% Similarity=0.172 Sum_probs=278.9
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 004829 347 DHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAAN 426 (728)
Q Consensus 347 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 426 (728)
.+.....+..+|..+...|++++|+.+|++++.+.+. +....+.++..+|.++...|++++|+.+|++++.+....
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 119 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE----DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc----ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 3566778889999999999999999999999987332 233445679999999999999999999999999999888
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC----------------
Q 004829 427 GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGK---------------- 490 (728)
Q Consensus 427 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------------- 490 (728)
++.+....++..+|.+|...|++++|+.+|++++.+.... .+.+....++..+|.+|...|+
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~ 197 (411)
T 4a1s_A 120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE 197 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhH
Confidence 8889999999999999999999999999999999998887 4567889999999999999999
Q ss_pred -hHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 004829 491 -LRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMY 569 (728)
Q Consensus 491 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~ 569 (728)
+++|+.++++++.+..... +.+....++..+|.+|...|++++|+.+|++++.+.+.. +.......++..+|.+|
T Consensus 198 ~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 198 ALTRAVEFYQENLKLMRDLG---DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF-GDRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHH
Confidence 9999999999999876643 457788899999999999999999999999999999875 44456677889999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004829 570 YMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNL 649 (728)
Q Consensus 570 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~L 649 (728)
..+|++++|+.+|++++.+...... ......++..+|.++...|++++|+.+|++++.+..... ..+....++..+
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l 349 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVELGE--REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG--DRIGEARACWSL 349 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChHHHHHHHHHH
Confidence 9999999999999999999887643 345578899999999999999999999999999987763 255667799999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHH
Q 004829 650 AGTYDAMGRIDDAIEILEYVVGMREE 675 (728)
Q Consensus 650 a~~~~~~g~~~~A~~~~~~al~~~~~ 675 (728)
|.+|..+|++++|+.+|++++.+.++
T Consensus 350 a~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 350 GNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998643
No 19
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.96 E-value=6.4e-26 Score=234.95 Aligned_cols=312 Identities=19% Similarity=0.237 Sum_probs=273.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829 266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE 345 (728)
Q Consensus 266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 345 (728)
...+...|..++..|++++|+.+|++++.+. +.++.....++..+|.+|...|++++|+.++++++.+.... .
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 77 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G 77 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--c
Confidence 4457778999999999999999999999874 44544456679999999999999999999999999998765 3
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCC-----------------
Q 004829 346 TDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGD----------------- 408 (728)
Q Consensus 346 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~----------------- 408 (728)
+.+....++..+|.++...|++++|+.++++++.+.+.... ....+.++..+|.++...|+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 45677889999999999999999999999999999988753 34556789999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 004829 409 ---YEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLY 485 (728)
Q Consensus 409 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 485 (728)
+++|+.++.+++.+....++.+....++..+|.++...|++++|+.++++++.+.... .+.+....++..+|.++
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHH
Confidence 9999999999999988888888889999999999999999999999999999998776 34566778999999999
Q ss_pred HHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 004829 486 HKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQM 565 (728)
Q Consensus 486 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 565 (728)
...|++++|+.++++++.+..... +......++..+|.++...|++++|+.++++++.+.+.. +.......++..+
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l 309 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQLK---DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSL 309 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence 999999999999999999977643 456678899999999999999999999999999998876 4455667788999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829 566 GVMYYMTGNYSDSYNTLKSAISKFRTS 592 (728)
Q Consensus 566 a~~~~~~g~~~~A~~~~~~al~~~~~~ 592 (728)
|.+|...|++++|..++++++.+.+..
T Consensus 310 a~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 310 GNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999886543
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.96 E-value=2.5e-25 Score=244.05 Aligned_cols=374 Identities=13% Similarity=0.109 Sum_probs=313.6
Q ss_pred CChHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChhHHHHHHH
Q 004829 219 PALGPFLLKQTREMIS----SGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCS----LGQYNEAIPVLE 290 (728)
Q Consensus 219 p~~~~~l~~~a~~~~~----~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~ 290 (728)
+..+.+++.+|..++. .+ ++++|+.+|++++.. ..+.+++.+|.+|.. .+++++|+.+|+
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~-~~~~A~~~~~~a~~~-----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTK-DLTQAMDWFRRAAEQ-----------GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCc-CHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 3456889999999998 75 999999999999863 125678899999999 999999999999
Q ss_pred HhhhhhhhhcCCchhHhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH---
Q 004829 291 RSVEIPVLEDGQDHALAKFAGCMQLGDTYAM----LGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ--- 363 (728)
Q Consensus 291 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--- 363 (728)
++.+.. ++ .+++.||.+|.. .+++++|+.+|+++.+. ....++..+|.+|..
T Consensus 104 ~a~~~~-------~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g 162 (490)
T 2xm6_A 104 KAALKG-------LP----QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----------GRDSGQQSMGDAYFEGDG 162 (490)
T ss_dssp HHHHTT-------CH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSS
T ss_pred HHHHCC-------CH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCC
Confidence 998642 22 348899999999 89999999999998765 345789999999998
Q ss_pred -hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 004829 364 -SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDS----KGDYEAALEHYVLASMSMAANGHELDVASIDCS 438 (728)
Q Consensus 364 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 438 (728)
.+++++|+.+|+++++. .. ..++..+|.+|.. .+++++|+.+|+++... ....++..
T Consensus 163 ~~~d~~~A~~~~~~a~~~----~~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~ 224 (490)
T 2xm6_A 163 VTRDYVMAREWYSKAAEQ----GN------VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--------GDELGQLH 224 (490)
T ss_dssp SCCCHHHHHHHHHHHHHT----TC------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC----CC------HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--------CCHHHHHH
Confidence 88999999999999864 11 3568999999998 89999999999998742 23568899
Q ss_pred HHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHcCCCC
Q 004829 439 IGDAYLS----LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK----IGKLRDSKSYCENALKIYGKPNH 510 (728)
Q Consensus 439 la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 510 (728)
+|.+|.. .+++++|+.+|+++++. ....+++.+|.+|.. .+++++|+.+|+++.+.
T Consensus 225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~------ 288 (490)
T 2xm6_A 225 LADMYYFGIGVTQDYTQSRVLFSQSAEQ----------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ------ 288 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHTT----------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT------
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc------
Confidence 9999997 89999999999999864 124578899999999 89999999999999754
Q ss_pred CCCcHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcC---CHHHHHHHH
Q 004829 511 GIPSEEIASGLIDIAAIYQSM-----NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTG---NYSDSYNTL 582 (728)
Q Consensus 511 ~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~ 582 (728)
. ...++..+|.+|... +++++|+.+|+++.+. +. ..+++.+|.+|...| ++++|+.+|
T Consensus 289 --~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-----~~----~~a~~~lg~~y~~~g~~~~~~~A~~~~ 354 (490)
T 2xm6_A 289 --G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-----GD----ATAQANLGAIYFRLGSEEEHKKAVEWF 354 (490)
T ss_dssp --T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-----TC----HHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred --C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-----CC----HHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence 1 245788999999998 9999999999999874 11 457789999999877 899999999
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH---
Q 004829 583 KSAISKFRTSGEKKSALFGIALNQMGLACVQ----RYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA--- 655 (728)
Q Consensus 583 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~--- 655 (728)
+++++. . ...+++.+|.+|.. .+++++|+.+|+++++. . ...++++||.+|..
T Consensus 355 ~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--------~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 355 RKAAAK-------G---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--------G--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------T--CHHHHHHHHHHHHHTSS
T ss_pred HHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--------C--CHHHHHHHHHHHHcCCC
Confidence 999874 1 24789999999999 89999999999999875 1 24589999999999
Q ss_pred -cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHh
Q 004829 656 -MGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEA 698 (728)
Q Consensus 656 -~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~ 698 (728)
.+++++|+.+|+++++.. +..|....+...|+.++...
T Consensus 415 ~~~d~~~A~~~~~~A~~~~-----~~~~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTND-----MNLFGTENRNITEKKLTAKQ 453 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHTTSCHHH
T ss_pred CCCCHHHHHHHHHHHHHCC-----CCCcCCHHHHHHHHhcCHhH
Confidence 899999999999999864 22266778888888877654
No 21
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.95 E-value=4.9e-25 Score=228.28 Aligned_cols=310 Identities=15% Similarity=0.147 Sum_probs=271.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCc
Q 004829 310 AGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPAS 389 (728)
Q Consensus 310 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 389 (728)
..++..|..+...|++++|+.+|++++... ..+......++..+|.++...|++++|+.++++++.+..... ..
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~ 79 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--DQ 79 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--cc
Confidence 347889999999999999999999999972 112223467899999999999999999999999999988765 34
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCC--------------------H
Q 004829 390 IEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLAR--------------------F 449 (728)
Q Consensus 390 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~ 449 (728)
...+.++..+|.++...|++++|+.++.+++.+....++.+..+.++..+|.++...|+ +
T Consensus 80 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (338)
T 3ro2_A 80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNAL 159 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHH
Confidence 55677899999999999999999999999999998888888888999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHH
Q 004829 450 DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQ 529 (728)
Q Consensus 450 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~ 529 (728)
++|+.++++++.+.... .+.+....++..+|.++...|++++|+.++++++.+..... +......++..+|.++.
T Consensus 160 ~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~l~~~~~ 234 (338)
T 3ro2_A 160 QAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG---DKAAERRAYSNLGNAYI 234 (338)
T ss_dssp HHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHH
Confidence 99999999999988876 45677788999999999999999999999999999876632 45667789999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 004829 530 SMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGL 609 (728)
Q Consensus 530 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 609 (728)
..|++++|+.++++++.+.+.. +.......++..+|.++...|++++|+.++++++.+...... ......++..+|.
T Consensus 235 ~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la~ 311 (338)
T 3ro2_A 235 FLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGEGRACWSLGN 311 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHH
Confidence 9999999999999999999876 555566788899999999999999999999999999887765 3455778999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 610 ACVQRYTINEAADLFEEARTILEK 633 (728)
Q Consensus 610 ~~~~~g~~~~A~~~~~~al~~~~~ 633 (728)
+|...|++++|..+|++++.+..+
T Consensus 312 ~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 312 AYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHcCChHHHHHHHHHHHHHHHh
Confidence 999999999999999999998543
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=1.7e-26 Score=243.42 Aligned_cols=317 Identities=15% Similarity=0.130 Sum_probs=249.1
Q ss_pred HHHHHcCChhHHHH-HHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 004829 274 AIHCSLGQYNEAIP-VLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGE 352 (728)
Q Consensus 274 ~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 352 (728)
.++...|+|++|+. .|++++.+. +..+......++.+|.++...|++++|+.+|+++++. .|....
T Consensus 33 ~~~~~~~~~~~a~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~ 99 (368)
T 1fch_A 33 EAHPWLSDYDDLTSATYDKGYQFE-----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHME 99 (368)
T ss_dssp -------------CHHHHCCCCCC-----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHH
T ss_pred hhhHHHHHHHHHHhhhhhHHHhcC-----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH
Confidence 36777899999999 999999875 2222222234889999999999999999999999987 778888
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChh-
Q 004829 353 TCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELD- 431 (728)
Q Consensus 353 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~- 431 (728)
++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+..|.+++...........
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 171 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLELKPDN--------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP 171 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 99999999999999999999999999886542 346899999999999999999999998865321110000
Q ss_pred ---------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004829 432 ---------VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPA--VASVFVRLADLYHKIGKLRDSKSYCEN 500 (728)
Q Consensus 432 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 500 (728)
....+..++.++ ..|++++|+.+|++++.. .|. ...++..+|.+|...|++++|+.+|++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 172 AEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL--------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHH--------STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh--------CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 011122566666 999999999999999998 666 678899999999999999999999999
Q ss_pred HHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004829 501 ALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYN 580 (728)
Q Consensus 501 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 580 (728)
++.+. |....++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.+|...|++++|+.
T Consensus 243 al~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~ 306 (368)
T 1fch_A 243 ALSVR---------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-------IRSRYNLGISCINLGAHREAVE 306 (368)
T ss_dssp HHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhC---------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHCCCHHHHHH
Confidence 99983 3346789999999999999999999999999986543 5788999999999999999999
Q ss_pred HHHHHHHHHHHhCCC---CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004829 581 TLKSAISKFRTSGEK---KSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG 636 (728)
Q Consensus 581 ~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 636 (728)
+|++++.+.....+. ..+....++..+|.++...|++++|..++.+++..+.+.++
T Consensus 307 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 365 (368)
T 1fch_A 307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 365 (368)
T ss_dssp HHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcC
Confidence 999999986554211 01122578999999999999999999999999998777654
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=2.9e-24 Score=235.61 Aligned_cols=352 Identities=13% Similarity=0.065 Sum_probs=299.6
Q ss_pred HHHHHHHHHHHHH----cCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Q 004829 266 VMCLHVLAAIHCS----LGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAM----LGQIENSILCYTAGLE 337 (728)
Q Consensus 266 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 337 (728)
+.+++.+|.+|.. .+++++|+.+|+++++.. + ..+++.||.+|.. .+++++|+.+|+++.+
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-------~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 107 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-------Y----TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL 107 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-------C----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 5678899999999 899999999999998642 2 2358999999999 9999999999999976
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH----cCCH
Q 004829 338 IQRQVLGETDHRVGETCRYVAEAHVQ----SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDS----KGDY 409 (728)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~ 409 (728)
. ....+++.||.+|.. .+++++|+.+|+++.+.. ...+++.+|.+|.. .+++
T Consensus 108 ~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----------~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 108 K----------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----------RDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp T----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCH
T ss_pred C----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHcCCCCCCCH
Confidence 4 245678899999998 889999999999997641 13568899999998 8999
Q ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 004829 410 EAALEHYVLASMSMAANGHELDVASIDCSIGDAYLS----LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLY 485 (728)
Q Consensus 410 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 485 (728)
++|+.+|++++.. ....++..+|.+|.. .+++++|+.+|+++++. .+ ..++..+|.+|
T Consensus 168 ~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~y 229 (490)
T 2xm6_A 168 VMAREWYSKAAEQ--------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-------GD---ELGQLHLADMY 229 (490)
T ss_dssp HHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHH
Confidence 9999999998753 236789999999999 89999999999999874 12 46788999999
Q ss_pred HH----cCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcCCCCCCc
Q 004829 486 HK----IGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS----MNELEQAVKLLNKALKIYGKTPGQQST 557 (728)
Q Consensus 486 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~ 557 (728)
.. .+++++|+.+|+++++.. ...++..+|.+|.. .+++++|+.+|+++.+. +
T Consensus 230 ~~g~g~~~~~~~A~~~~~~a~~~~-----------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-----~---- 289 (490)
T 2xm6_A 230 YFGIGVTQDYTQSRVLFSQSAEQG-----------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-----G---- 289 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-----T----
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-----C----
Confidence 97 899999999999998651 24578899999998 99999999999999753 1
Q ss_pred HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 004829 558 IAGIEAQMGVMYYMT-----GNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY---TINEAADLFEEART 629 (728)
Q Consensus 558 ~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~ 629 (728)
...+++.+|.+|... +++++|+.+|+++++. .+ ..+++.+|.+|...| ++++|+.+|+++++
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-------GD---ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-------CC---HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 145778999999998 9999999999999874 12 468899999999877 89999999999987
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----hCCh
Q 004829 630 ILEKEYGPYHHDTLGVYSNLAGTYDA----MGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE----AGRV 701 (728)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~La~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~----~g~~ 701 (728)
. ....+++.||.+|.. .+++++|+.+|+++++. ....++.+||.+|.. .+++
T Consensus 360 ~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 360 K----------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----------GLSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp T----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred C----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCCCCCCH
Confidence 5 224589999999999 89999999999999882 235789999999999 8999
Q ss_pred hHHHHHHHHHHHhhcc
Q 004829 702 RNRKSRSLVTFLDSNS 717 (728)
Q Consensus 702 ~~A~~~~l~~ll~~~~ 717 (728)
++|+ ..++.+++..+
T Consensus 420 ~~A~-~~~~~A~~~~~ 434 (490)
T 2xm6_A 420 VQAW-AWFDTASTNDM 434 (490)
T ss_dssp HHHH-HHHHHHHHHHC
T ss_pred HHHH-HHHHHHHHCCC
Confidence 9999 99999888773
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=2.9e-26 Score=241.54 Aligned_cols=317 Identities=15% Similarity=0.134 Sum_probs=246.1
Q ss_pred HHHHhCCHHHHHH-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 004829 360 AHVQSLQFDEAEK-ICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCS 438 (728)
Q Consensus 360 ~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 438 (728)
++...|+|++|+. .|.+++.+.+..... .+..++.+|.++...|++++|+.+|++++.. .|....++..
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~ 103 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLR----DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ------DPKHMEAWQY 103 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTT----TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS------CTTCHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCccc----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHH
Confidence 5667789999999 999888765543311 1234788999999999999999999999865 4666789999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCC-----
Q 004829 439 IGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIP----- 513 (728)
Q Consensus 439 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----- 513 (728)
+|.++...|++++|+.+|++++.+ .|....++..+|.+|...|++++|+.++++++.+.........
T Consensus 104 l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 175 (368)
T 1fch_A 104 LGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 175 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 999999999999999999999998 7777889999999999999999999999999987433110000
Q ss_pred --cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 514 --SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT 591 (728)
Q Consensus 514 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 591 (728)
.......+..++.++ ..|++++|+.+|++++.+.+... ...++..+|.+|...|++++|+.+|++++.+
T Consensus 176 ~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 246 (368)
T 1fch_A 176 AGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI-----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--- 246 (368)
T ss_dssp ----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 000111222566666 89999999999999999866531 2567889999999999999999999999987
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 592 SGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG 671 (728)
Q Consensus 592 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 671 (728)
.+....++..+|.++...|++++|+.+|++++.+ +|....++..+|.+|..+|++++|+.+|++++.
T Consensus 247 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 247 -----RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2334578999999999999999999999999998 777788999999999999999999999999999
Q ss_pred HHHHHcC---CCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcc
Q 004829 672 MREEKLG---TANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNS 717 (728)
Q Consensus 672 ~~~~~~~---~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~ 717 (728)
+.....+ ..++....++..++.+|..+|++++|. ..++..++...
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l~~~~ 361 (368)
T 1fch_A 314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG-AADARDLSTLL 361 (368)
T ss_dssp HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH-HHHTTCHHHHH
T ss_pred hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH-HhHHHHHHHHH
Confidence 8743311 123344789999999999999999999 66665554433
No 25
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.7e-25 Score=231.58 Aligned_cols=300 Identities=15% Similarity=0.137 Sum_probs=258.2
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 004829 349 RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGH 428 (728)
Q Consensus 349 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 428 (728)
.....+..+|..++..|++++|+.+|++++...+.... ++..++.++...|++++|+..+.+++..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------~~~~~~~~~~~~~~~~~A~~~~~~~~~~------ 85 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS--------CLPVHIGTLVELNKANELFYLSHKLVDL------ 85 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT--------THHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh--------hHHHHHHHHHHhhhHHHHHHHHHHHHHh------
Confidence 33456788999999999999999999999987665543 3677889999999999999999999875
Q ss_pred ChhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829 429 ELDVASIDCSIGDAYLSLA-RFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK 507 (728)
Q Consensus 429 ~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (728)
.|....++..+|.++...| ++++|+.+|++++.+ .|....++..+|.++...|++++|+.+|++++.....
T Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 157 (330)
T 3hym_B 86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG 157 (330)
T ss_dssp CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT
T ss_pred CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc
Confidence 4556778999999999999 999999999999987 6777788999999999999999999999999999433
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 508 PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAIS 587 (728)
Q Consensus 508 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 587 (728)
....+..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.++++++.
T Consensus 158 ---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 158 ---------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-------PFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp ---------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34567779999999999999999999999876543 57888999999999999999999999999
Q ss_pred HHHHhCCCCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHH
Q 004829 588 KFRTSGEKKS-ALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEIL 666 (728)
Q Consensus 588 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~ 666 (728)
+....+.... +....++..+|.++...|++++|+.+|++++.+ .|....++..+|.+|..+|++++|+.+|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------CccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 8766544322 233568999999999999999999999999998 7777789999999999999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHH-HHhCChh
Q 004829 667 EYVVGMREEKLGTANPDVEDEKRRLAELL-KEAGRVR 702 (728)
Q Consensus 667 ~~al~~~~~~~~~~~p~~~~~~~~La~~~-~~~g~~~ 702 (728)
++++++ .|+...++..++.++ ...|+.+
T Consensus 294 ~~al~~--------~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 294 HTALGL--------RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HTTTTT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHcc--------CCCchHHHHHHHHHHHHHhCchh
Confidence 999984 477778899999988 4566544
No 26
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=2e-25 Score=231.02 Aligned_cols=294 Identities=13% Similarity=0.078 Sum_probs=255.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829 312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE 391 (728)
Q Consensus 312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 391 (728)
+..+|..++..|++++|+.+|++++.. +|....++..++.++...|++++|+.++++++...+..
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------- 89 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEK--------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN------- 89 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC-------
Confidence 789999999999999999999999988 67777888889999999999999999999999876543
Q ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829 392 EAADRRLMGLICDSKG-DYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGEN 470 (728)
Q Consensus 392 ~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 470 (728)
..++..+|.++...| ++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++..
T Consensus 90 -~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------- 154 (330)
T 3hym_B 90 -PVSWFAVGCYYLMVGHKNEHARRYLSKATTL------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL-------- 154 (330)
T ss_dssp -THHHHHHHHHHHHSCSCHHHHHHHHHHHHTT------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred -HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence 246889999999999 999999999998754 4556778999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
.|....++..+|.+|...|++++|+.++++++... +....++..+|.++...|++++|+.++++++.+.+.
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 225 (330)
T 3hym_B 155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225 (330)
T ss_dssp TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence 66666778889999999999999999999999873 334678999999999999999999999999999876
Q ss_pred CCCCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829 551 TPGQQ--STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEAR 628 (728)
Q Consensus 551 ~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 628 (728)
..... +....++..+|.++...|++++|+.+|++++++. +....++..+|.++...|++++|+.+|++++
T Consensus 226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp TSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred ccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--------ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 53221 2335678899999999999999999999999872 2235789999999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHH-HHcCChH
Q 004829 629 TILEKEYGPYHHDTLGVYSNLAGTY-DAMGRID 660 (728)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~La~~~-~~~g~~~ 660 (728)
++ .|+...++..++.++ ...|+.+
T Consensus 298 ~~--------~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 298 GL--------RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred cc--------CCCchHHHHHHHHHHHHHhCchh
Confidence 98 777788999999998 4555543
No 27
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.94 E-value=1.4e-23 Score=222.55 Aligned_cols=349 Identities=11% Similarity=0.082 Sum_probs=271.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH-HHHHHHhCCHHHHH-----------HHHHHHH
Q 004829 311 GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYV-AEAHVQSLQFDEAE-----------KICQMAL 378 (728)
Q Consensus 311 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~-----------~~~~~al 378 (728)
..++-...+...+++++|..+++++.+..... ..++.....+..+ .......+++..+. ..+++.-
T Consensus 14 ~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~--~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~ 91 (383)
T 3ulq_A 14 EKINEWYMYIRRFSIPDAEYLRREIKQELDQM--EEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEID 91 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHH
Confidence 45555666778999999999999987765432 1233333222221 12222334444444 4444432
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004829 379 DIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHK 458 (728)
Q Consensus 379 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 458 (728)
. .+... ........++.+|.++...|++++|+.+|++++.+....++.+..+.++..+|.+|...|++++|+.++++
T Consensus 92 ~-~~~~~--~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~ 168 (383)
T 3ulq_A 92 K-KQARL--TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168 (383)
T ss_dssp H-HTHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred h-cCCCc--hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 11110 11222334667999999999999999999999998888888888999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 004829 459 ALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAV 538 (728)
Q Consensus 459 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 538 (728)
+++++... +...+..+.++..+|.+|..+|++++|+.+|++++.+..... +.+..+.++.++|.+|..+|++++|+
T Consensus 169 al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~lg~~y~~~g~~~~A~ 244 (383)
T 3ulq_A 169 AYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK---QPQLMGRTLYNIGLCKNSQSQYEDAI 244 (383)
T ss_dssp HHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 99998876 222677889999999999999999999999999999987743 46778889999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHH
Q 004829 539 KLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTIN 618 (728)
Q Consensus 539 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 618 (728)
.+|++++.+.... +..+..+.++..+|.+|..+|++++|+.++++++.+....++. .....+..+|.++...|++
T Consensus 245 ~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~l~~~~~~~~~~- 319 (383)
T 3ulq_A 245 PYFKRAIAVFEES-NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDV---IYLSEFEFLKSLYLSGPDE- 319 (383)
T ss_dssp HHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHTSSCCH-
T ss_pred HHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHhCCCcH-
Confidence 9999999998876 4435568899999999999999999999999999998877643 2233477799999999995
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004829 619 EAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLG 678 (728)
Q Consensus 619 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~ 678 (728)
..+.+++.++++. ...+....++..||.+|..+|++++|..+|++++.+.+++..
T Consensus 320 ---~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 320 ---EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp ---HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred ---HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 4455555555544 336777889999999999999999999999999998876544
No 28
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.94 E-value=1.3e-23 Score=222.77 Aligned_cols=352 Identities=12% Similarity=0.057 Sum_probs=274.4
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-HHHHHHcCChhHHH-----------HH
Q 004829 221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVL-AAIHCSLGQYNEAI-----------PV 288 (728)
Q Consensus 221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~-----------~~ 288 (728)
....++.....++..+ ++++|..+++++...+... ..+++....+..+ .......+++..+. ..
T Consensus 11 ~v~~~l~~w~~~i~~~-~~~~A~~l~~~i~~~~~~~---~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~ 86 (383)
T 3ulq_A 11 SIGEKINEWYMYIRRF-SIPDAEYLRREIKQELDQM---EEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDL 86 (383)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHH
T ss_pred HHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhH
Confidence 4455677777788886 9999999999987765443 2234333222222 22233344445444 55
Q ss_pred HHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHH
Q 004829 289 LERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFD 368 (728)
Q Consensus 289 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 368 (728)
++++-... ...........++.+|.++...|++++|+.+|++++.+.... ++.+..+.++..+|.+|...|+++
T Consensus 87 ~~~i~~~~----~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~ 160 (383)
T 3ulq_A 87 LLEIDKKQ----ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTY 160 (383)
T ss_dssp HHHHHHHT----HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcC----CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHH
Confidence 55432211 011112223356679999999999999999999999886543 334567899999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCC
Q 004829 369 EAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLAR 448 (728)
Q Consensus 369 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 448 (728)
+|+.++++++++.+.... .....+.++..+|.+|...|++++|+.+|.+++.+....++.+..+.++.++|.+|..+|+
T Consensus 161 ~A~~~~~~al~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 161 FSMDYARQAYEIYKEHEA-YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp HHHHHHHHHHHHHHTCST-THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence 999999999999988754 2456678899999999999999999999999999999888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHH
Q 004829 449 FDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIY 528 (728)
Q Consensus 449 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 528 (728)
+++|+.+|++++.+.+... +.+....++.++|.+|..+|++++|+.++++++.+..... .+.....+..+|.+|
T Consensus 240 ~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~l~~~~ 313 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESN--ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG----DVIYLSEFEFLKSLY 313 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHH
Confidence 9999999999999987762 2378899999999999999999999999999999976643 344444577899999
Q ss_pred HHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004829 529 QSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE 594 (728)
Q Consensus 529 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 594 (728)
...|++ ..+.+++...... +..+....++..+|.+|...|++++|..+|++++.+.+.+..
T Consensus 314 ~~~~~~----~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 314 LSGPDE----EAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp TSSCCH----HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred hCCCcH----HHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999995 4455555555554 445566778889999999999999999999999998776644
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.94 E-value=1.3e-24 Score=228.70 Aligned_cols=281 Identities=14% Similarity=0.096 Sum_probs=226.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 004829 395 DRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAV 474 (728)
Q Consensus 395 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 474 (728)
.++.+|..+...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++.+ .|..
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~ 132 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQ------DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--------QPNN 132 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCC
Confidence 4889999999999999999999999876 4666889999999999999999999999999998 7778
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004829 475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGI-PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPG 553 (728)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 553 (728)
..++..+|.+|...|++++|+.+|++++.+........ ........+..+|.++...|++++|+.+|++++.+.+...
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~- 211 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI- 211 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC-
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc-
Confidence 89999999999999999999999999999832210000 0001133445569999999999999999999999865521
Q ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 554 QQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK 633 (728)
Q Consensus 554 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 633 (728)
...++..+|.+|...|++++|+.+|++++++ .+....++..+|.+|...|++++|+.+|++++.+
T Consensus 212 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 276 (365)
T 4eqf_A 212 ----DPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--- 276 (365)
T ss_dssp ----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred ----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence 2567889999999999999999999999987 2334678999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH----HHHHHHHHHHHHHHhCChhHHHHHHH
Q 004829 634 EYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPD----VEDEKRRLAELLKEAGRVRNRKSRSL 709 (728)
Q Consensus 634 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~----~~~~~~~La~~~~~~g~~~~A~~~~l 709 (728)
+|....++..+|.+|..+|++++|+.+|++++.+.....++.++. ...++..|+.++..+|+.+.|. ...
T Consensus 277 -----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~ 350 (365)
T 4eqf_A 277 -----QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ-AAN 350 (365)
T ss_dssp -----CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH-HHH
T ss_pred -----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH-HHH
Confidence 788888999999999999999999999999999886554433332 3678999999999999999988 544
Q ss_pred HH
Q 004829 710 VT 711 (728)
Q Consensus 710 ~~ 711 (728)
+.
T Consensus 351 ~~ 352 (365)
T 4eqf_A 351 LG 352 (365)
T ss_dssp TT
T ss_pred Hh
Confidence 44
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=8.8e-25 Score=230.10 Aligned_cols=285 Identities=15% Similarity=0.107 Sum_probs=231.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCc
Q 004829 310 AGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPAS 389 (728)
Q Consensus 310 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 389 (728)
..++.+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++.+.+..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----- 132 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQ--------DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN----- 132 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----
Confidence 34899999999999999999999999998 78888999999999999999999999999999886443
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829 390 IEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHEL----DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKS 465 (728)
Q Consensus 390 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 465 (728)
..++..+|.++...|++++|+.+|++++.+........ .....+..+|.++...|++++|+.+|++++.+
T Consensus 133 ---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 206 (365)
T 4eqf_A 133 ---LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--- 206 (365)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH---
T ss_pred ---HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---
Confidence 35699999999999999999999999987632221111 12344556799999999999999999999998
Q ss_pred hcCCCCHH--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829 466 AKGENHPA--VASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNK 543 (728)
Q Consensus 466 ~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 543 (728)
.|. ...++..+|.+|...|++++|+.+|++++.+. |....++..+|.+|...|++++|+.+|++
T Consensus 207 -----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 207 -----NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR---------PEDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp -----SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555 67889999999999999999999999999983 33467899999999999999999999999
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc----HHHHHHHHHHHHHHHHcCCHHH
Q 004829 544 ALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS----ALFGIALNQMGLACVQRYTINE 619 (728)
Q Consensus 544 al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~ 619 (728)
++++.+.. ..++..+|.+|..+|++++|+.+|++++++......... .....++..++.++...|+.+.
T Consensus 273 al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (365)
T 4eqf_A 273 ALEIQPGF-------IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPEL 345 (365)
T ss_dssp HHHHCTTC-------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCCCc-------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHH
Confidence 99986554 678899999999999999999999999999766543211 1135789999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 004829 620 AADLFEEARTILEKE 634 (728)
Q Consensus 620 A~~~~~~al~~~~~~ 634 (728)
|.....+.+..+++.
T Consensus 346 a~~~~~~~l~~~~~~ 360 (365)
T 4eqf_A 346 FQAANLGDLDVLLRA 360 (365)
T ss_dssp HHHHHTTCCGGGTTT
T ss_pred HHHHHHhhHHHHHHh
Confidence 999888776665443
No 31
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.92 E-value=4.3e-22 Score=210.56 Aligned_cols=343 Identities=15% Similarity=0.072 Sum_probs=260.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH--HHHHcCChhHHH---------HHHHHhhh
Q 004829 226 LKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAA--IHCSLGQYNEAI---------PVLERSVE 294 (728)
Q Consensus 226 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~---------~~~~~al~ 294 (728)
+.--..++..+ ++++|..+++++...+.... .+.... .++.+-. .....+.+..+. ..++++-.
T Consensus 16 l~~wy~~i~~~-~~~~A~~l~~~i~~~~~~~~---~~~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 90 (378)
T 3q15_A 16 INEWYKMIRQF-SVPDAEILKAEVEQDIQQME---EDQDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIET 90 (378)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHGGGBC---CCHHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHG
T ss_pred HHHHHHHHHHc-CHHHHHHHHHHHHHHHHHhc---ccHHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhc
Confidence 33344456674 99999999999877654431 233333 2332222 222234443333 44444322
Q ss_pred hhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004829 295 IPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKIC 374 (728)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 374 (728)
.. .+.........++.+|..+...|++++|+.+|++++.+.... .+.+..+.++..+|.+|...|+++.|+.++
T Consensus 91 ~~----~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 91 PQ----KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp GG----HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cC----CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 21 111222233467889999999999999999999999886553 335678889999999999999999999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHH
Q 004829 375 QMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIF 454 (728)
Q Consensus 375 ~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 454 (728)
++++++.+.... .....+.++..+|.+|...|++++|+.+|.+++.+....++....+.++.++|.+|..+|++++|+.
T Consensus 165 ~~al~~~~~~~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~ 243 (378)
T 3q15_A 165 LQALDIYQNHPL-YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE 243 (378)
T ss_dssp HHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhCCC-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999987654 2345677899999999999999999999999999998888888889999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCH
Q 004829 455 SYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL 534 (728)
Q Consensus 455 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 534 (728)
+|++++.+.+.. .+|....++..+|.+|..+|++++|+.++++++.+..... .+.....+..++.++...++.
T Consensus 244 ~~~~al~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~l~~ly~~~~~~ 316 (378)
T 3q15_A 244 HFQKAAKVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS----HKFYKELFLFLQAVYKETVDE 316 (378)
T ss_dssp HHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC----CSCHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHHHhh---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHhCCCcH
Confidence 999999988776 2566689999999999999999999999999999987653 223344568889999988883
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829 535 EQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS 592 (728)
Q Consensus 535 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 592 (728)
..+.+++..+... +..+....++..+|.+|...|++++|..+|++++++.+.+
T Consensus 317 ----~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 317 ----RKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp ----HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3333444443333 3444566778899999999999999999999999886543
No 32
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.92 E-value=1.5e-22 Score=214.07 Aligned_cols=337 Identities=12% Similarity=0.137 Sum_probs=257.1
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH--HHHhCCHHHHH---------HHHHHHHHHHHHcCC
Q 004829 318 TYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEA--HVQSLQFDEAE---------KICQMALDIHRENTS 386 (728)
Q Consensus 318 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~---------~~~~~al~~~~~~~~ 386 (728)
.+...+++++|..+++++....... ..+.... .++.+... ....+.+..+. ..+++.-......
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~--~~~~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~-- 95 (378)
T 3q15_A 21 KMIRQFSVPDAEILKAEVEQDIQQM--EEDQDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL-- 95 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHGGGB--CCCHHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHH--
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHh--cccHHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCC--
Confidence 3478899999999999887664332 1123332 33332221 11122222222 3333321111110
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004829 387 PASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSA 466 (728)
Q Consensus 387 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 466 (728)
+.......++.+|..+...|++++|+.+|.+++.+....++.+..+.++..+|.+|...|++++|+.+++++++++...
T Consensus 96 -~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 96 -TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred -ccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 1122334577899999999999999999999999888888888899999999999999999999999999999998865
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 467 KGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALK 546 (728)
Q Consensus 467 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 546 (728)
. ...+..+.++.++|.+|...|++++|+.+|++++++.+... +....+.++.++|.+|..+|++++|+.+|++++.
T Consensus 175 ~-~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 175 P-LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ---NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred C-CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 11346789999999999999999999999999999987643 4567788999999999999999999999999999
Q ss_pred HHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCC---HHHHHHH
Q 004829 547 IYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYT---INEAADL 623 (728)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~ 623 (728)
+.... +.+ ....++..+|.+|..+|++++|+.++++++++....+... ....+..++.++...++ +.+|+.+
T Consensus 251 ~~~~~-~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 251 VSREK-VPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF---YKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHH-CGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC---HHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHhh-CCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 88765 323 3378899999999999999999999999999876655432 23456788889988888 5555555
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004829 624 FEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLG 678 (728)
Q Consensus 624 ~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~ 678 (728)
+++ . ...+....++..+|.+|...|++++|..+|++++++.+++..
T Consensus 326 ~~~-------~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 326 FEK-------K--NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp HHH-------T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh-------C--CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 544 2 235677788899999999999999999999999998876643
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=2.5e-23 Score=214.89 Aligned_cols=284 Identities=17% Similarity=0.116 Sum_probs=236.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 004829 395 DRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAV 474 (728)
Q Consensus 395 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 474 (728)
.++.+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+.++++++.. .|..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~ 88 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQA------APEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPKD 88 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcCC
Confidence 4788999999999999999999999875 4556788999999999999999999999999998 7777
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHH-------------H-HH-HHHHcCCHHHHHH
Q 004829 475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLID-------------I-AA-IYQSMNELEQAVK 539 (728)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-------------l-a~-~~~~~g~~~~A~~ 539 (728)
..++..+|.++...|++++|+.++++++....... ..+.. + +. ++...|++++|+.
T Consensus 89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE---------QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT---------TC--------------------CCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH---------HHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 88999999999999999999999999998743321 12222 2 44 5888999999999
Q ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHH
Q 004829 540 LLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINE 619 (728)
Q Consensus 540 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 619 (728)
++++++...+.. ..++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++
T Consensus 160 ~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 160 LLHAALEMNPND-------AQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp HHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHH
Confidence 999999886553 578889999999999999999999999987 23335789999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC----ChHHHHHHHHHHHHH
Q 004829 620 AADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTA----NPDVEDEKRRLAELL 695 (728)
Q Consensus 620 A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~p~~~~~~~~La~~~ 695 (728)
|+.+|++++.. .|....++..+|.+|..+|++++|+.+|++++.+.....+.. ......++..++.++
T Consensus 225 A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (327)
T 3cv0_A 225 ALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLL 296 (327)
T ss_dssp HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHH
Confidence 99999999998 777778999999999999999999999999999762211110 111788999999999
Q ss_pred HHhCChhHHHHHHHHHHHhhcccccccCCc
Q 004829 696 KEAGRVRNRKSRSLVTFLDSNSQNLKEDAI 725 (728)
Q Consensus 696 ~~~g~~~~A~~~~l~~ll~~~~~~~~~~~i 725 (728)
..+|++++|. ..++..++..+....-+.+
T Consensus 297 ~~~g~~~~A~-~~~~~~l~~~~~~~~~~~~ 325 (327)
T 3cv0_A 297 NVMNRPDLVE-LTYAQNVEPFAKEFGLQSM 325 (327)
T ss_dssp HHTTCHHHHH-HHTTCCSHHHHHHTTSSCC
T ss_pred HhcCCHHHHH-HHHHHHHHhcchhhhHHHh
Confidence 9999999999 8887777777666554433
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.91 E-value=1e-22 Score=210.23 Aligned_cols=289 Identities=14% Similarity=0.086 Sum_probs=238.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829 266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE 345 (728)
Q Consensus 266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 345 (728)
...++.+|..+...|++++|+.+|++++... +..+ .++..+|.++...|++++|+.+|++++..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------- 84 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-----PERE----EAWRSLGLTQAENEKDGLAIIALNHARML------- 84 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Confidence 4457789999999999999999999999864 3333 35889999999999999999999999998
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHH-HH-HHHHcCCHHHHHHHHHH
Q 004829 346 TDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE-----EAADRRLM-GL-ICDSKGDYEAALEHYVL 418 (728)
Q Consensus 346 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~a~~~~~l-g~-~~~~~g~~~~A~~~~~~ 418 (728)
.|....++..+|.++...|++++|+..+++++...+......... .......+ +. ++...|++++|+.++++
T Consensus 85 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (327)
T 3cv0_A 85 -DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163 (327)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHH
T ss_pred -CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence 677788999999999999999999999999998766554321100 00001122 44 58889999999999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 004829 419 ASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYC 498 (728)
Q Consensus 419 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 498 (728)
++.. .+....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++
T Consensus 164 ~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 229 (327)
T 3cv0_A 164 ALEM------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGNRPQEALDAY 229 (327)
T ss_dssp HHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhh------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9866 3556788999999999999999999999999998 6777889999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCc-----HHHHHHHHHHHHHHcC
Q 004829 499 ENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQST-----IAGIEAQMGVMYYMTG 573 (728)
Q Consensus 499 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~la~~~~~~g 573 (728)
++++... +....++..+|.++...|++++|+.+|++++.+.+........ ...++..+|.++...|
T Consensus 230 ~~a~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 230 NRALDIN---------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp HHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcC---------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 9999983 2345688999999999999999999999999998774222211 5778899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhCC
Q 004829 574 NYSDSYNTLKSAISKFRTSGE 594 (728)
Q Consensus 574 ~~~~A~~~~~~al~~~~~~~~ 594 (728)
++++|..+++++++.+....+
T Consensus 301 ~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 301 RPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp CHHHHHHHTTCCSHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 999999999999988765443
No 35
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=6.2e-22 Score=202.78 Aligned_cols=279 Identities=18% Similarity=0.151 Sum_probs=229.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 343 LGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMS 422 (728)
Q Consensus 343 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 422 (728)
.+.++|....++..+|.++...|++++|+.++++++.+............+.++..+|.++...|++++|+.+|.+++.+
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999887765556777888999999999999999999999999988
Q ss_pred HHhc--CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004829 423 MAAN--GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCEN 500 (728)
Q Consensus 423 ~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 500 (728)
.... .+.+....++..+|.+|...|++++|+.+|++++.+.....+.+++....++..+|.++...|++++|+.++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7666 67788899999999999999999999999999999999888888999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC----CCC-C---CcHHHHHHHHHHHHHHc
Q 004829 501 ALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT----PGQ-Q---STIAGIEAQMGVMYYMT 572 (728)
Q Consensus 501 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~-~---~~~~~~~~~la~~~~~~ 572 (728)
++.+..... +.+.+....++..+|.+|...|++++|+.+|++++++.+.. ... . ......+..++..+...
T Consensus 179 a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
T 3nf1_A 179 ALEIYQTKL-GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257 (311)
T ss_dssp HHHHHHHTS-CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence 999977653 34467888999999999999999999999999999886542 000 0 11233344455556666
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 573 GNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 573 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
+.+.+|...+.++... .+....++..+|.+|...|++++|+.+|++++++
T Consensus 258 ~~~~~a~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 258 TSFGEYGGWYKACKVD--------SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCC--------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7777777777777654 5667889999999999999999999999999988
No 36
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.91 E-value=8.2e-21 Score=200.34 Aligned_cols=312 Identities=14% Similarity=0.086 Sum_probs=254.9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 004829 350 VGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHE 429 (728)
Q Consensus 350 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 429 (728)
...++..+|.++...|++++|+.++++++...+. ......+.++..+|.++...|++++|+.++.+++.+....++.
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPP---GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 4567788899999999999999999999986532 1233456678899999999999999999999999998887777
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC
Q 004829 430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN 509 (728)
Q Consensus 430 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 509 (728)
.....++.++|.++...|++++|+.++++++.+.....+..++....++..+|.++...|++++|..++++++.+.....
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 169 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence 77788899999999999999999999999999988765444577888999999999999999999999999999977643
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 510 HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQ-STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK 588 (728)
Q Consensus 510 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 588 (728)
++....++..+|.++...|++++|..++++++.+.... +.. .........++.++...|++++|..++++++..
T Consensus 170 ----~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 170 ----PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp ----GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred ----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 22356788999999999999999999999999987654 222 111222224556688999999999999988753
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004829 589 FRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEY 668 (728)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~ 668 (728)
. ..........+..+|.++...|++++|...+++++........ .+....++..+|.++...|++++|..+|++
T Consensus 245 ~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 245 E----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL--MSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318 (373)
T ss_dssp C----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred C----CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2 1111222345788999999999999999999999998766321 234456889999999999999999999999
Q ss_pred HHHHHHH
Q 004829 669 VVGMREE 675 (728)
Q Consensus 669 al~~~~~ 675 (728)
++.+...
T Consensus 319 al~~~~~ 325 (373)
T 1hz4_A 319 ALKLANR 325 (373)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9998764
No 37
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.4e-21 Score=200.04 Aligned_cols=282 Identities=20% Similarity=0.249 Sum_probs=225.9
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829 259 GKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEI 338 (728)
Q Consensus 259 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 338 (728)
+..+|..+.++..+|.++...|++++|+.+|++++.+.....+...+ ....++..+|.+|...|++++|+.+|++++.+
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP-DVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 44568889999999999999999999999999999987654433333 24567999999999999999999999999999
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829 339 QRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVL 418 (728)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 418 (728)
.....+.+.+....++..+|.+|...|++++|+.++++++.+............+.++..+|.++...|++++|+.+|++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99888888899999999999999999999999999999999987764445667788899999999999999999999999
Q ss_pred HHHHHHhc--CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc-CCCCH------HHHHHHHHHHHHHHHcC
Q 004829 419 ASMSMAAN--GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK-GENHP------AVASVFVRLADLYHKIG 489 (728)
Q Consensus 419 al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~------~~~~~~~~la~~~~~~g 489 (728)
++...... ++.+....++..+|.+|...|++++|+.+|++++.+..... +...+ .....+..++..+...+
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence 99887665 55788889999999999999999999999999999865421 11111 12344445555666667
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 490 KLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 490 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
.+.+|...+.+++.. .+....++..+|.+|...|++++|+.+|++++++.++
T Consensus 259 ~~~~a~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 259 SFGEYGGWYKACKVD---------SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CSCCCC------------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcCCC---------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 777777777777654 6778999999999999999999999999999998653
No 38
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=4.2e-21 Score=212.67 Aligned_cols=427 Identities=12% Similarity=0.023 Sum_probs=305.9
Q ss_pred CCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhh
Q 004829 217 GNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIP 296 (728)
Q Consensus 217 ~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 296 (728)
.+|.....+..++.. ...| ++++|...|++++..+ |.....|..++..+...|++++|..+|++++...
T Consensus 8 ~~P~~~~~w~~l~~~-~~~~-~~~~a~~~~e~al~~~---------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~ 76 (530)
T 2ooe_A 8 ENPYDLDAWSILIRE-AQNQ-PIDKARKTYERLVAQF---------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV 76 (530)
T ss_dssp HCTTCHHHHHHHHHH-HHSS-CHHHHHHHHHHHHTTC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred hCCCCHHHHHHHHHH-HHhC-CHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence 467788888888884 6776 9999999999999853 5557778899999999999999999999999874
Q ss_pred hhhcCCchhHhHHHHHHHHHH-HHHHhCCHHHHHH----HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH--------
Q 004829 297 VLEDGQDHALAKFAGCMQLGD-TYAMLGQIENSIL----CYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ-------- 363 (728)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------- 363 (728)
+ +. ..|..++. .+...|++++|.+ .|++++.. .|. ++....+|..++.....
T Consensus 77 -----p-~~----~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~----~g~-~~~~~~~w~~~~~~~~~~~~~~~~~ 141 (530)
T 2ooe_A 77 -----L-HI----DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK----IGM-EIMSYQIWVDYINFLKGVEAVGSYA 141 (530)
T ss_dssp -----C-CH----HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH----TTT-STTCHHHHHHHHHHHHHSCCCSSTT
T ss_pred -----C-Ch----HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH----CCC-CcccHHHHHHHHHHHhcCCCcccHH
Confidence 3 22 23666664 4456788888776 55555543 332 34445667666666554
Q ss_pred -hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHHHHHhcCC-
Q 004829 364 -SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLI-------------CDSKGDYEAALEHYVLASMSMAANGH- 428 (728)
Q Consensus 364 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~-------------~~~~g~~~~A~~~~~~al~~~~~~~~- 428 (728)
.|+++.|..+|++++. .|.. . . ...+...... ....+++..|...+............
T Consensus 142 ~~~~~~~a~~~y~~al~-~P~~---~-~--~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 142 ENQRITAVRRVYQRGCV-NPMI---N-I--EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp HHHHHHHHHHHHHHHTT-SCCT---T-H--HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HHhHHHHHHHHHHHHHh-chhh---h-H--HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 7899999999999997 2211 1 1 1112211111 11345677777766653322222211
Q ss_pred ----Chh-------HHHHHHHHHHHHHHh----CCH----HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--
Q 004829 429 ----ELD-------VASIDCSIGDAYLSL----ARF----DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK-- 487 (728)
Q Consensus 429 ----~~~-------~~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-- 487 (728)
.|. ....|.......... ++. ..++..|++++.. .|....++..+|.++..
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--------~p~~~~~w~~~~~~~~~~~ 286 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSS 286 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHH
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhc
Confidence 111 123333332222211 232 4788899999998 67778899999999986
Q ss_pred -----cCChH-------HHHHHHHHHHH-HHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004829 488 -----IGKLR-------DSKSYCENALK-IYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ 554 (728)
Q Consensus 488 -----~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 554 (728)
.|+++ +|+..|++++. + .|....++..++.++...|++++|...|++++++.+..
T Consensus 287 ~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~---------~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--- 354 (530)
T 2ooe_A 287 KLLAEKGDMNNAKLFSDEAANIYERAISTL---------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID--- 354 (530)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHTTTT---------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC---
T ss_pred hhhhhccchhhhhhhhHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccC---
Confidence 79987 89999999986 4 23356789999999999999999999999999863322
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHH
Q 004829 555 QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLA-CVQRYTINEAADLFEEARTILEK 633 (728)
Q Consensus 555 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~ 633 (728)
...++..++.++...|++++|..+|++|++.. +.....+...+.+ +...|++++|..+|+++++.
T Consensus 355 ---~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--------~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--- 420 (530)
T 2ooe_A 355 ---PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--- 420 (530)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--------TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---
T ss_pred ---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--------CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---
Confidence 13578889999999999999999999998741 1112334444444 34689999999999999998
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 004829 634 EYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPD-VEDEKRRLAELLKEAGRVRNRKSRSLVTF 712 (728)
Q Consensus 634 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~La~~~~~~g~~~~A~~~~l~~l 712 (728)
.|+...++..++.++...|++++|..+|++++.. .+.+|. ...++..........|+.+.+. .....+
T Consensus 421 -----~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~-----~~~~~~~~~~lw~~~~~~e~~~G~~~~~~-~~~~r~ 489 (530)
T 2ooe_A 421 -----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS-----GSLPPEKSGEIWARFLAFESNIGDLASIL-KVEKRR 489 (530)
T ss_dssp -----HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS-----CCSCGGGCHHHHHHHHHHHHHSSCHHHHH-HHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence 6666778999999999999999999999999974 234454 3456777788888999999999 888888
Q ss_pred Hhhcccccc
Q 004829 713 LDSNSQNLK 721 (728)
Q Consensus 713 l~~~~~~~~ 721 (728)
++..|+..+
T Consensus 490 ~~~~p~~~~ 498 (530)
T 2ooe_A 490 FTAFREEYE 498 (530)
T ss_dssp HHHTHHHHT
T ss_pred HHHCchhcc
Confidence 888886443
No 39
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.89 E-value=7.3e-22 Score=206.63 Aligned_cols=253 Identities=11% Similarity=0.018 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcCC
Q 004829 391 EEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLAR-FDEAIFSYHKALTAFKSAKGE 469 (728)
Q Consensus 391 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~ 469 (728)
....++..+|.++...|++++|+..|.+++.+ .|....+|+++|.++..+|+ +++|+.+|++++.+
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l------- 161 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIEL------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE------- 161 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-------
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-------
Confidence 34567889999999999999999999999977 67888999999999999997 99999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004829 470 NHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYG 549 (728)
Q Consensus 470 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 549 (728)
.|....+++++|.++..+|++++|+.+|++++.+ .|....+|.++|.++..+|++++|+.+|++++++.+
T Consensus 162 -~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l---------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P 231 (382)
T 2h6f_A 162 -QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ---------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 231 (382)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred -CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 8999999999999999999999999999999999 455678999999999999999999999999999977
Q ss_pred cCCCCCCcHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC--CHHHHH
Q 004829 550 KTPGQQSTIAGIEAQMGVMYYM-TGNYSDS-----YNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY--TINEAA 621 (728)
Q Consensus 550 ~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~ 621 (728)
.. ..+++++|.++.. .|.+++| +.+|++++.+ .+....+++++|.++...| ++++|+
T Consensus 232 ~~-------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 232 RN-------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp TC-------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred CC-------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCccchHHHH
Confidence 65 6788999999999 5655888 5899999987 4445679999999999988 689998
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---------ChHHHHHHHHHH-HHHHHHHcCCCChHHHHHHHHH
Q 004829 622 DLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG---------RIDDAIEILEYV-VGMREEKLGTANPDVEDEKRRL 691 (728)
Q Consensus 622 ~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g---------~~~~A~~~~~~a-l~~~~~~~~~~~p~~~~~~~~L 691 (728)
+.++++ +. +|+...++..||.+|..+| .+++|+.+|+++ ++ .+|.....|..+
T Consensus 297 ~~~~~~-~~--------~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--------~DP~r~~~w~~~ 359 (382)
T 2h6f_A 297 NQLLDL-QP--------SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--------KDTIRKEYWRYI 359 (382)
T ss_dssp HHHHHH-TT--------TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--------TCGGGHHHHHHH
T ss_pred HHHHHh-cc--------CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--------hCchhHHHHHHH
Confidence 888775 43 6677779999999999985 258888888887 66 468888889888
Q ss_pred HHHHHHh
Q 004829 692 AELLKEA 698 (728)
Q Consensus 692 a~~~~~~ 698 (728)
+..+..+
T Consensus 360 ~~~l~~~ 366 (382)
T 2h6f_A 360 GRSLQSK 366 (382)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887765
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.7e-21 Score=190.38 Aligned_cols=253 Identities=15% Similarity=0.172 Sum_probs=215.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829 392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH 471 (728)
Q Consensus 392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 471 (728)
.+..+..+|.++...|++++|+.+|.+++... ....++..+|.++...|++++|+.++++++.+..... .+.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~ 75 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR-ADY 75 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc-cch
Confidence 45679999999999999999999999998763 2356899999999999999999999999999865431 223
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829 472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 472 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 551 (728)
+....++..+|.++...|++++|+.+|++++.+... +.++...|++++|+..+++++...+.
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----------------~~~~~~~~~~~~a~~~~~~~~~~~~~- 137 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----------------ADILTKLRNAEKELKKAEAEAYVNPE- 137 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHHHHHHHHHHHCCHH-
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----------------hHHHHHHhHHHHHHHHHHHHHHcCcc-
Confidence 444889999999999999999999999999998321 35677888999999999999876443
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 552 PGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTIL 631 (728)
Q Consensus 552 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 631 (728)
...++..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.+|++++.+
T Consensus 138 ------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~- 202 (258)
T 3uq3_A 138 ------KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK- 202 (258)
T ss_dssp ------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Confidence 3678899999999999999999999999987 2333578999999999999999999999999998
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 004829 632 EKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAEL 694 (728)
Q Consensus 632 ~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~ 694 (728)
.|....++..+|.+|..+|++++|+.+|++++++..+.. ..|....++..|+.+
T Consensus 203 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 203 -------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKA 256 (258)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHT
T ss_pred -------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc--CCCchHHHHHHHHHh
Confidence 777788999999999999999999999999999875543 336666666666554
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.1e-20 Score=187.65 Aligned_cols=254 Identities=18% Similarity=0.132 Sum_probs=216.9
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC
Q 004829 348 HRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANG 427 (728)
Q Consensus 348 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 427 (728)
+..+.++..+|.++...|++++|+.+|++++... .. ..++..+|.++...|++++|+.++.+++.+.....
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~--------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 72 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD--------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR 72 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC--------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc--------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence 3567889999999999999999999999999876 21 24689999999999999999999999998866543
Q ss_pred -CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc
Q 004829 428 -HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYG 506 (728)
Q Consensus 428 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 506 (728)
+.+....++..+|.++...|++++|+.+|++++.+ .+. +.++...|++++|+..+++++..
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~--------~~~~~~~~~~~~a~~~~~~~~~~-- 134 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--------HRT--------ADILTKLRNAEKELKKAEAEAYV-- 134 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC--------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------Cch--------hHHHHHHhHHHHHHHHHHHHHHc--
Confidence 33444789999999999999999999999999997 333 45678889999999999999886
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829 507 KPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAI 586 (728)
Q Consensus 507 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 586 (728)
.+....++..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|++++
T Consensus 135 -------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 135 -------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp -------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 57788999999999999999999999999999986554 5688899999999999999999999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004829 587 SKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGT 652 (728)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~ 652 (728)
+. .+....++..+|.++...|++++|+.+|++++++...... .|....++..++.+
T Consensus 201 ~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 201 EK--------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN--GSSAREIDQLYYKA 256 (258)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT--TTTHHHHHHHHHHT
T ss_pred Hh--------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcC--CCchHHHHHHHHHh
Confidence 87 2334678999999999999999999999999999544322 35666666666554
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.89 E-value=7.4e-22 Score=198.22 Aligned_cols=263 Identities=9% Similarity=-0.015 Sum_probs=218.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChh
Q 004829 352 ETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELD 431 (728)
Q Consensus 352 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 431 (728)
..++.+|.+++..|++++|+..|+++++..+.... ++..+|.++...|++++|+.+|.+++.. ..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~ 72 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY--------IYNRRAVCYYELAKYDLAQKDIETYFSK---VNATKA 72 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST--------THHHHHHHHHHTTCHHHHHHHHHHHHTT---SCTTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH--------HHHHHHHHHHHHhhHHHHHHHHHHHHhc---cCchhH
Confidence 45788999999999999999999999987665432 4889999999999999999999998862 233344
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC
Q 004829 432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG 511 (728)
Q Consensus 432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 511 (728)
...++..+|.++...|++++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++++.+
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------- 137 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP------- 137 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-------
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-------
Confidence 4778999999999999999999999999998 7777889999999999999999999999999877
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Q 004829 512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGN---YSDSYNTLKSAISK 588 (728)
Q Consensus 512 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~ 588 (728)
.+....++..+|......+++++|+.+|++++++.+.. ..++..+|.++...|+ +++|+.+|++++++
T Consensus 138 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 138 --TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp --SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 23346788999944555569999999999999987655 5678889999999999 99999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004829 589 FRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG 657 (728)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g 657 (728)
..............++..+|.+|...|++++|+.+|++++++ +|+...++..++.+....+
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--------DPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHC-------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CccHHHHHHHhhhhhcccc
Confidence 765443322335678999999999999999999999999999 7777778777776655443
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.89 E-value=7.8e-22 Score=206.43 Aligned_cols=255 Identities=9% Similarity=0.014 Sum_probs=223.3
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHh
Q 004829 347 DHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGD-YEAALEHYVLASMSMAA 425 (728)
Q Consensus 347 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~ 425 (728)
.|....++..+|.++...|++++|+..|++++.+.|.. ..+|+.+|.++...|+ +++|+..|++++.+
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~--------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--- 161 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN--------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--- 161 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC--------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHH---
Confidence 78889999999999999999999999999999987654 3579999999999997 99999999999987
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 426 NGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIY 505 (728)
Q Consensus 426 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 505 (728)
.|....+|+++|.++..+|++++|+..|++++++ .|....++.++|.++..+|++++|+.+|++++++
T Consensus 162 ---~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l- 229 (382)
T 2h6f_A 162 ---QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE- 229 (382)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-
T ss_pred ---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-
Confidence 6778899999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcC--CHHH
Q 004829 506 GKPNHGIPSEEIASGLIDIAAIYQS-MNELEQA-----VKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTG--NYSD 577 (728)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~ 577 (728)
.|....+|+++|.++.. .|.+++| +.+|++++.+.+.. ..+++++|.++...| ++++
T Consensus 230 --------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~-------~~a~~~l~~ll~~~g~~~~~~ 294 (382)
T 2h6f_A 230 --------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN-------ESAWNYLKGILQDRGLSKYPN 294 (382)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHTTTCGGGCHH
T ss_pred --------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHccCccchHH
Confidence 45567899999999999 5554777 59999999987765 578899999999988 6899
Q ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-HHHHHHhcCCCChhHHHHHH
Q 004829 578 SYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY---------TINEAADLFEEA-RTILEKEYGPYHHDTLGVYS 647 (728)
Q Consensus 578 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~ 647 (728)
|+..++++ +. .+....++..+|.+|..+| .+++|+.+|+++ +++ +|.....|.
T Consensus 295 a~~~~~~~-~~--------~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--------DP~r~~~w~ 357 (382)
T 2h6f_A 295 LLNQLLDL-QP--------SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--------DTIRKEYWR 357 (382)
T ss_dssp HHHHHHHH-TT--------TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--------CGGGHHHHH
T ss_pred HHHHHHHh-cc--------CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--------CchhHHHHH
Confidence 98887665 21 2223578899999999874 258999999998 787 899888999
Q ss_pred HHHHHHHHc
Q 004829 648 NLAGTYDAM 656 (728)
Q Consensus 648 ~La~~~~~~ 656 (728)
.++..+..+
T Consensus 358 ~~~~~l~~~ 366 (382)
T 2h6f_A 358 YIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 44
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.89 E-value=5.4e-20 Score=194.04 Aligned_cols=313 Identities=12% Similarity=0.037 Sum_probs=249.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829 266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE 345 (728)
Q Consensus 266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 345 (728)
..++..+|.++...|++++|+.++++++.... ...+.....++..+|.++...|++++|+.++++++.+.+.. .
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 87 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELP----PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--D 87 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--C
Confidence 55677889999999999999999999998752 22223345578999999999999999999999999998763 1
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 004829 346 TDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAA 425 (728)
Q Consensus 346 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 425 (728)
+......++..+|.++...|++++|+.++++++.+.+.......+..+.++..+|.++...|++++|+.++.+++.+...
T Consensus 88 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 88 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 22344567889999999999999999999999999988766544455667889999999999999999999999988765
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 426 NGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP-AVASVFVRLADLYHKIGKLRDSKSYCENALKI 504 (728)
Q Consensus 426 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (728)
.+.. ....++..+|.++...|++++|..++++++.+.... .... ........++.++...|++++|..++++++..
T Consensus 168 ~~~~-~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 168 YQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG--KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp SCGG-GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred cCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 5433 356789999999999999999999999999885443 1111 11222234566788999999999999988754
Q ss_pred HcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829 505 YGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKS 584 (728)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 584 (728)
... ........+..++.++...|++++|...+++++...+.. +.......++..+|.++...|++++|...+++
T Consensus 245 ~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 245 EFA-----NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL-RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318 (373)
T ss_dssp CCT-----TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCC-----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 211 111223356889999999999999999999999998875 43444556788899999999999999999999
Q ss_pred HHHHHHHhC
Q 004829 585 AISKFRTSG 593 (728)
Q Consensus 585 al~~~~~~~ 593 (728)
++.+....+
T Consensus 319 al~~~~~~g 327 (373)
T 1hz4_A 319 ALKLANRTG 327 (373)
T ss_dssp HHHHHHHHC
T ss_pred HHHHhcccc
Confidence 999876544
No 45
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.88 E-value=4e-21 Score=193.55 Aligned_cols=268 Identities=16% Similarity=0.153 Sum_probs=220.4
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 004829 320 AMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLM 399 (728)
Q Consensus 320 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l 399 (728)
...|++++|+.+|++++++..+..+.++|....++..+|.+|...|++++|+.++++++.+.........+..+.++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 35689999999999999999999888889999999999999999999999999999999999887666667788899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhc--CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 004829 400 GLICDSKGDYEAALEHYVLASMSMAAN--GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASV 477 (728)
Q Consensus 400 g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 477 (728)
|.++...|++++|+.+|.+++.+.... .+.+....++.++|.+|...|++++|+.+|++++.++....+.+.+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999999887554 446888999999999999999999999999999999999988889999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCc
Q 004829 478 FVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQST 557 (728)
Q Consensus 478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 557 (728)
+..+|.+|...|++++|+.++++++.+......+...+.....+..++..+...+....+. .+..+...........+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA-PYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHhcCCCCHH
Confidence 9999999999999999999999999985432111122233445666676666655544443 355555555555445567
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 558 IAGIEAQMGVMYYMTGNYSDSYNTLKSAISK 588 (728)
Q Consensus 558 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 588 (728)
...++..+|.+|..+|++++|+.+|++++++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7888999999999999999999999999864
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.88 E-value=9.9e-22 Score=197.30 Aligned_cols=249 Identities=12% Similarity=0.089 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCC
Q 004829 434 SIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIP 513 (728)
Q Consensus 434 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 513 (728)
..+..+|.+++..|++++|+..|+++++. .|....++..+|.+|...|++++|+.++++++... .+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~~ 69 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV------NA 69 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS------CT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc------Cc
Confidence 45778999999999999999999999987 66667789999999999999999999999999832 12
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004829 514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG 593 (728)
Q Consensus 514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 593 (728)
......++..+|.++...|++++|+.+|++++++.+.. ..++..+|.+|...|++++|+.+|++++++
T Consensus 70 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----- 137 (272)
T 3u4t_A 70 TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR-------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP----- 137 (272)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------THHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----
T ss_pred hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----
Confidence 23346789999999999999999999999999986654 367889999999999999999999999876
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC---hHHHHHHHHHHH
Q 004829 594 EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGR---IDDAIEILEYVV 670 (728)
Q Consensus 594 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~---~~~A~~~~~~al 670 (728)
.+....++..+|..+...+++++|+.+|++++++ .|....++..+|.++..+|+ +++|+.+|++++
T Consensus 138 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 138 ---TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 2334578999995555566999999999999998 77778899999999999999 999999999999
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829 671 GMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNL 720 (728)
Q Consensus 671 ~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~ 720 (728)
++......+..+....++..+|.+|...|++++|+ .+++.+++.+|.+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD-AAWKNILALDPTNK 255 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCccHH
Confidence 98754422222335689999999999999999999 99999999998864
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.88 E-value=8.4e-22 Score=212.81 Aligned_cols=384 Identities=13% Similarity=0.085 Sum_probs=266.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh---hHHHHHHHHhhhhhhhhcCC
Q 004829 226 LKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQY---NEAIPVLERSVEIPVLEDGQ 302 (728)
Q Consensus 226 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~ 302 (728)
..+|..++..| ++++|+.+|+++... +. +.+++.+|.+|...|++ ++|+.+|+++++.
T Consensus 7 ~~la~~~~~~g-~~~~A~~~~~~aa~~------g~-----~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------- 67 (452)
T 3e4b_A 7 QRLANEALKRG-DTVTAQQNYQQLAEL------GY-----SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------- 67 (452)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHH------TC-----CTGGGTCC--------------------------------
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHC------CC-----HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-------
Confidence 45788899997 999999999999764 22 33467899999999999 9999999999853
Q ss_pred chhHhHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829 303 DHALAKFAGCMQLGDTYAMLG-----QIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMA 377 (728)
Q Consensus 303 ~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 377 (728)
++ .+++.||.++...+ ++++|+.+|++++.. ....+++.||.+|...+...++...++..
T Consensus 68 -~~----~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~ 132 (452)
T 3e4b_A 68 -SP----RAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN----------GEGNTLIPLAMLYLQYPHSFPNVNAQQQI 132 (452)
T ss_dssp --------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT----------TCSSCHHHHHHHHHHCGGGCTTCCHHHHH
T ss_pred -CH----HHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 22 23889999777766 889999999999874 12238899999999888766665555555
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhC---CHHHHHH
Q 004829 378 LDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLA---RFDEAIF 454 (728)
Q Consensus 378 l~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~ 454 (728)
....+... ..+++.+|.+|...+.++++............. .++. +++.+|.+|...| ++++|+.
T Consensus 133 ~~a~~~g~-------~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~--~~~~---a~~~Lg~~~~~~g~~~~~~~A~~ 200 (452)
T 3e4b_A 133 SQWQAAGY-------PEAGLAQVLLYRTQGTYDQHLDDVERICKAALN--TTDI---CYVELATVYQKKQQPEQQAELLK 200 (452)
T ss_dssp HHHHHHTC-------TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT--TCTT---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCC-------HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc--CCHH---HHHHHHHHHHHcCCcccHHHHHH
Confidence 44443322 236889999999999777666654433332221 1222 8899999999999 9999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHH-H-
Q 004829 455 SYHKALTAFKSAKGENHPAVASVFVRLADLYHKI----GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAI-Y- 528 (728)
Q Consensus 455 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~-~- 528 (728)
+|+++.+. .+..+..+++||.+|... +++++|+.+|+++. . . ...+++++|.+ +
T Consensus 201 ~~~~aa~~--------g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~--g---------~~~a~~~Lg~~~~~ 260 (452)
T 3e4b_A 201 QMEAGVSR--------GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P--G---------YPASWVSLAQLLYD 260 (452)
T ss_dssp HHHHHHHT--------TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G--G---------STHHHHHHHHHHHH
T ss_pred HHHHHHHC--------CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C--C---------CHHHHHHHHHHHHh
Confidence 99999987 566667778999999766 79999999999987 1 1 34678899998 4
Q ss_pred -HHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q 004829 529 -QSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTG-----NYSDSYNTLKSAISKFRTSGEKKSALFGI 602 (728)
Q Consensus 529 -~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 602 (728)
...+++++|+.+|+++.+. + ...++++||.+|. .| ++++|+.+|+++. . . ...
T Consensus 261 ~~~~~d~~~A~~~~~~Aa~~-----g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~-------g---~~~ 319 (452)
T 3e4b_A 261 FPELGDVEQMMKYLDNGRAA-----D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G-------R---EVA 319 (452)
T ss_dssp SGGGCCHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T-------T---CHH
T ss_pred CCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C-------C---CHH
Confidence 5789999999999999853 2 2567889999998 66 9999999999987 1 1 247
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHH
Q 004829 603 ALNQMGLACVQ----RYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA----MGRIDDAIEILEYVVGMRE 674 (728)
Q Consensus 603 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~----~g~~~~A~~~~~~al~~~~ 674 (728)
++++||.+|.. ..++++|+.+|+++.+. .+ ..+.++||.+|.. ..++.+|..+|+++.+.
T Consensus 320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-- 387 (452)
T 3e4b_A 320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-------GQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ-- 387 (452)
T ss_dssp HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-------TC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-------Ch---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC--
Confidence 89999999887 34999999999999764 13 3478999999985 56899999999999872
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHh--CChhHHHHHHHHHHHhhcc
Q 004829 675 EKLGTANPDVEDEKRRLAELLKEA--GRVRNRKSRSLVTFLDSNS 717 (728)
Q Consensus 675 ~~~~~~~p~~~~~~~~La~~~~~~--g~~~~A~~~~l~~ll~~~~ 717 (728)
.++. +...++.+...+ ++..+|. ..++.....++
T Consensus 388 -----g~~~---a~~~l~~l~~~~~~~~~~~a~-~~~~~~~~~~~ 423 (452)
T 3e4b_A 388 -----DTPE---ANDLATQLEAPLTPAQRAEGQ-RLVQQELAARG 423 (452)
T ss_dssp -----CCHH---HHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHH
T ss_pred -----CCHH---HHHHHHHHHHhCCHHHHHHHH-HHHHHHHHhcc
Confidence 3333 444455554332 3444555 55555554443
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.87 E-value=2e-21 Score=187.94 Aligned_cols=199 Identities=18% Similarity=0.219 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC
Q 004829 432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG 511 (728)
Q Consensus 432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 511 (728)
.+.++..+|.++...|++++|+..|++++.+ .|....++..+|.++...|++++|+..|++++++
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------- 68 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR------- 68 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 3467899999999999999999999999998 8888999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004829 512 IPSEEIASGLIDIAAIYQSM-----------NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYN 580 (728)
Q Consensus 512 ~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 580 (728)
.|....++..+|.++... |++++|+..|++++++.+.. ..++..+|.++..+|++++|+.
T Consensus 69 --~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-------~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 69 --TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-------APLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHcCChHHHHH
Confidence 344677899999999999 99999999999999987655 5788899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH
Q 004829 581 TLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRID 660 (728)
Q Consensus 581 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~ 660 (728)
.|++++++. ....++..+|.++...|++++|+..|++++++ +|+...++..+|.++..+|+++
T Consensus 140 ~~~~al~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 140 SLKQALALE---------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp HHHHHHHHC---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC-----
T ss_pred HHHHHHhcc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHH
Confidence 999999982 23578999999999999999999999999999 8888889999999999999999
Q ss_pred HHHHHHHHHHH
Q 004829 661 DAIEILEYVVG 671 (728)
Q Consensus 661 ~A~~~~~~al~ 671 (728)
+|+.+|+++..
T Consensus 203 ~A~~~~~~~~~ 213 (217)
T 2pl2_A 203 EAARAAALEHH 213 (217)
T ss_dssp -----------
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 49
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.87 E-value=3.8e-20 Score=186.36 Aligned_cols=269 Identities=17% Similarity=0.220 Sum_probs=220.7
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHH
Q 004829 443 YLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLI 522 (728)
Q Consensus 443 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 522 (728)
....|++++|+.+|+++++++.+..+.+++....++..+|.+|...|++++|+.++++++.+..... +.+++....++.
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~ 89 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL-GKDHPAVAATLN 89 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CTTCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc-CCcchHHHHHHH
Confidence 3457899999999999999999998888899999999999999999999999999999999976543 245688899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHH
Q 004829 523 DIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQ-STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFG 601 (728)
Q Consensus 523 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 601 (728)
.+|.+|...|++++|+.+|++++.+.....+.. +....++..+|.+|...|++++|+.+|++++.+.........+...
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 999999999999999999999999987653433 4667889999999999999999999999999998888777677788
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004829 602 IALNQMGLACVQRYTINEAADLFEEARTILEKEY-GPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTA 680 (728)
Q Consensus 602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 680 (728)
.++..+|.++...|++++|+.+|++++.+..... +..++.....+..++..+...+....+.. +..+.... +..+..
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~ 247 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWY-KACKVD 247 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------------CCCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHH-HhcCCC
Confidence 9999999999999999999999999999865532 22344445567777777776666555544 44444333 344567
Q ss_pred ChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhh
Q 004829 681 NPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDS 715 (728)
Q Consensus 681 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~ 715 (728)
+|....++..||.+|..+|++++|. ..++.+++.
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~ 281 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAH-TLEDCASRN 281 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHh
Confidence 8999999999999999999999999 888888764
No 50
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.86 E-value=1.3e-20 Score=182.15 Aligned_cols=197 Identities=21% Similarity=0.195 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829 266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE 345 (728)
Q Consensus 266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 345 (728)
+.+++.+|.++...|++++|+..|++++.+. +..+. +++.+|.++...|++++|+..|++++++
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~~------- 68 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-----PQDPE----ALYWLARTQLKLGLVNPALENGKTLVAR------- 68 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-----SSCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 4568899999999999999999999999875 55544 4999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Q 004829 346 TDHRVGETCRYVAEAHVQS-----------LQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALE 414 (728)
Q Consensus 346 ~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 414 (728)
.|....++..+|.++... |++++|+..|++++++.|.. ..++..+|.++...|++++|+.
T Consensus 69 -~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~--------~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 69 -TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY--------APLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc--------HHHHHHHHHHHHHcCChHHHHH
Confidence 888899999999999999 99999999999999986643 3468999999999999999999
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHH
Q 004829 415 HYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDS 494 (728)
Q Consensus 415 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 494 (728)
.|++++.+. ....++.++|.+|...|++++|+..|++++++ .|....++..+|.++...|++++|
T Consensus 140 ~~~~al~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 140 SLKQALALE-------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp HHHHHHHHC-------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC-------
T ss_pred HHHHHHhcc-------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHH
Confidence 999998772 34678899999999999999999999999998 888889999999999999999999
Q ss_pred HHHHHHHH
Q 004829 495 KSYCENAL 502 (728)
Q Consensus 495 ~~~~~~al 502 (728)
+..|+++-
T Consensus 205 ~~~~~~~~ 212 (217)
T 2pl2_A 205 ARAAALEH 212 (217)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 99998764
No 51
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.85 E-value=4.9e-21 Score=206.76 Aligned_cols=352 Identities=13% Similarity=0.033 Sum_probs=247.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHcCCC
Q 004829 270 HVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQI---ENSILCYTAGLEIQRQVLGET 346 (728)
Q Consensus 270 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~ 346 (728)
..+|..++..|++++|+.+|+++.+.. ++. +++.||.+|...|++ ++|+.+|+++++.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g-------~~~----A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-------- 67 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG-------YSE----AQVGLADIQVGTRDPAQIKQAEATYRAAADT-------- 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-------CCT----GGGTCC---------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC-------CHH----HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--------
Confidence 347899999999999999999987642 222 378899999999988 9999999999854
Q ss_pred ChHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 347 DHRVGETCRYVAEAHVQSL-----QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASM 421 (728)
Q Consensus 347 ~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 421 (728)
...+++.+|.++...+ ++++|+.+|+++++. ..+ .+++.||.+|...+...++...+.....
T Consensus 68 ---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~----g~~------~A~~~Lg~~y~~~~~~~~~~~a~~~~~~ 134 (452)
T 3e4b_A 68 ---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN----GEG------NTLIPLAMLYLQYPHSFPNVNAQQQISQ 134 (452)
T ss_dssp ------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT----TCS------SCHHHHHHHHHHCGGGCTTCCHHHHHHH
T ss_pred ---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC----CCH------HHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 3467889999777666 889999999999872 111 1488999999988765555444333332
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC---ChHHHHHHH
Q 004829 422 SMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIG---KLRDSKSYC 498 (728)
Q Consensus 422 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~ 498 (728)
... .....+++.+|.+|...+.++++............. .+|. +++.||.+|...| ++++|+.+|
T Consensus 135 a~~-----~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~ 202 (452)
T 3e4b_A 135 WQA-----AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----TTDI---CYVELATVYQKKQQPEQQAELLKQM 202 (452)
T ss_dssp HHH-----HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTT---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHH-----CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----CCHH---HHHHHHHHHHHcCCcccHHHHHHHH
Confidence 221 222467889999999999877776664433332221 1333 8899999999999 999999999
Q ss_pred HHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH-H--HH
Q 004829 499 ENALKIYGKPNHGIPSEEIASGLIDIAAIYQSM----NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVM-Y--YM 571 (728)
Q Consensus 499 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-~--~~ 571 (728)
+++.+.. +..+..++++|.+|... +++++|+.+|+++. +.. ..+++++|.+ | ..
T Consensus 203 ~~aa~~g---------~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~-------~~a~~~Lg~~~~~~~~ 263 (452)
T 3e4b_A 203 EAGVSRG---------TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY-------PASWVSLAQLLYDFPE 263 (452)
T ss_dssp HHHHHTT---------CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS-------THHHHHHHHHHHHSGG
T ss_pred HHHHHCC---------CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC-------HHHHHHHHHHHHhCCC
Confidence 9999872 22355668899999765 79999999999987 333 4577899998 4 57
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004829 572 TGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY-----TINEAADLFEEARTILEKEYGPYHHDTLGVY 646 (728)
Q Consensus 572 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 646 (728)
.+++++|+.+|+++.+. . ...+++.||.+|. .| ++++|+.+|+++. . .+ ..++
T Consensus 264 ~~d~~~A~~~~~~Aa~~--------g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~-------g~---~~A~ 321 (452)
T 3e4b_A 264 LGDVEQMMKYLDNGRAA--------D--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G-------RE---VAAD 321 (452)
T ss_dssp GCCHHHHHHHHHHHHHT--------T--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T-------TC---HHHH
T ss_pred CCCHHHHHHHHHHHHHC--------C--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C-------CC---HHHH
Confidence 89999999999999854 1 3578999999998 55 9999999999987 2 13 4588
Q ss_pred HHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHhhcc
Q 004829 647 SNLAGTYDA----MGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE----AGRVRNRKSRSLVTFLDSNS 717 (728)
Q Consensus 647 ~~La~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~----~g~~~~A~~~~l~~ll~~~~ 717 (728)
++||.+|.. ..++++|+.+|+++.+ +....+.++||.+|.. ..++.+|. .+++...+...
T Consensus 322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~----------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~-~~~~~A~~~g~ 389 (452)
T 3e4b_A 322 YYLGQIYRRGYLGKVYPQKALDHLLTAAR----------NGQNSADFAIAQLFSQGKGTKPDPLNAY-VFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHTTTTSSCCHHHHHHHHHHHHT----------TTCTTHHHHHHHHHHSCTTBCCCHHHHH-HHHHHHHTTCC
T ss_pred HHHHHHHHCCCCCCcCHHHHHHHHHHHHh----------hChHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHHCCC
Confidence 999999987 4499999999999987 2335678899999885 45888898 88877766543
No 52
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=7.9e-19 Score=194.37 Aligned_cols=386 Identities=11% Similarity=-0.004 Sum_probs=270.5
Q ss_pred hhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004829 263 LEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV 342 (728)
Q Consensus 263 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 342 (728)
|....+|..++.. ...|++++|...|++++... |... ..|..++..+...|++++|...|++++..
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-----P~~~----~~w~~~~~~~~~~~~~~~a~~~~~ral~~---- 75 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-----PSSG----RFWKLYIEAEIKAKNYDKVEKLFQRCLMK---- 75 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTT----
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-----CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Confidence 4456678888874 78999999999999999876 4443 34999999999999999999999999988
Q ss_pred cCCCChHHHHHHHHHHH-HHHHhCCHHHHHH----HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH---------cCC
Q 004829 343 LGETDHRVGETCRYVAE-AHVQSLQFDEAEK----ICQMALDIHRENTSPASIEEAADRRLMGLICDS---------KGD 408 (728)
Q Consensus 343 ~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~---------~g~ 408 (728)
.|. ...|..++. .....|+++.|.+ .|++++....... .. ..+|...+..... .|+
T Consensus 76 ----~p~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~--~~---~~~w~~~~~~~~~~~~~~~~~~~~~ 145 (530)
T 2ooe_A 76 ----VLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI--MS---YQIWVDYINFLKGVEAVGSYAENQR 145 (530)
T ss_dssp ----CCC-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTST--TC---HHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred ----CCC-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCc--cc---HHHHHHHHHHHhcCCCcccHHHHhH
Confidence 564 446777764 4456688877766 6666665433221 11 2345555555544 789
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH-------------HHhCCHHHHHHHHHHHHHHHHHhcCC----CC
Q 004829 409 YEAALEHYVLASMSMAANGHELDVASIDCSIGDAY-------------LSLARFDEAIFSYHKALTAFKSAKGE----NH 471 (728)
Q Consensus 409 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~~----~~ 471 (728)
++.|...|++++.. +.. .....+...+... ...+++..|...|.......... .. -.
T Consensus 146 ~~~a~~~y~~al~~----P~~-~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l-~~~~~~~~ 219 (530)
T 2ooe_A 146 ITAVRRVYQRGCVN----PMI-NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGL-DRNAPSVP 219 (530)
T ss_dssp HHHHHHHHHHHTTS----CCT-THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHC-CSSSCCCC
T ss_pred HHHHHHHHHHHHhc----hhh-hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-ccccccCC
Confidence 99999999998752 111 1122222222211 12456677776666533322221 11 01
Q ss_pred H-------HHHHHHHHHHHHHHHc----CCh----HHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH------
Q 004829 472 P-------AVASVFVRLADLYHKI----GKL----RDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS------ 530 (728)
Q Consensus 472 ~-------~~~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~------ 530 (728)
| .....+.......... ++. ..++..|++++... |....+|..+|.++..
T Consensus 220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~---------p~~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL---------GHHPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhchhhh
Confidence 1 1123333333222221 232 47888999999984 3356788999999886
Q ss_pred -cCCHH-------HHHHHHHHHHH-HHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHH
Q 004829 531 -MNELE-------QAVKLLNKALK-IYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFG 601 (728)
Q Consensus 531 -~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 601 (728)
.|+++ +|+..|+++++ +.++. ..++..+|.++...|++++|...|++++++ .+.. ..
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~-------~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~--~~ 356 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKN-------MLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDID--PT 356 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----SSSC--HH
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-----cccC--ch
Confidence 79987 88999999886 43332 678889999999999999999999999985 1111 13
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004829 602 IALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGT-YDAMGRIDDAIEILEYVVGMREEKLGTA 680 (728)
Q Consensus 602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~ 680 (728)
.++..+|.++...|++++|..+|++|++. .|.....+...+.+ +...|++++|..+|+++++..
T Consensus 357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~------- 421 (530)
T 2ooe_A 357 LVYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY------- 421 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-------
Confidence 58889999999999999999999999886 33333445555544 446999999999999999965
Q ss_pred ChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829 681 NPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ 718 (728)
Q Consensus 681 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~ 718 (728)
|+...++..++.++...|+.++|. ..++.++...|.
T Consensus 422 -p~~~~~~~~~~~~~~~~g~~~~Ar-~~~~~al~~~~~ 457 (530)
T 2ooe_A 422 -GDIPEYVLAYIDYLSHLNEDNNTR-VLFERVLTSGSL 457 (530)
T ss_dssp -TTCHHHHHHHHHHHTTTTCHHHHH-HHHHHHHHSCCS
T ss_pred -CCCHHHHHHHHHHHHhCCCHhhHH-HHHHHHHhccCC
Confidence 666778899999999999999999 999999887554
No 53
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=9.8e-20 Score=184.22 Aligned_cols=278 Identities=11% Similarity=0.071 Sum_probs=217.3
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 004829 359 EAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCS 438 (728)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 438 (728)
...+..|+|..|+..+++.....+.. .......++.+|...|+++.|+..++. . .+....++..
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~-------~~e~~~~l~r~yi~~g~~~~al~~~~~--------~-~~~~~~a~~~ 70 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPER-------DVERDVFLYRAYLAQRKYGVVLDEIKP--------S-SAPELQAVRM 70 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHH-------HHHHHHHHHHHHHHTTCHHHHHHHSCT--------T-SCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchh-------hHHHHHHHHHHHHHCCCHHHHHHHhcc--------c-CChhHHHHHH
Confidence 34667999999999887754432222 123567789999999999999986643 1 3446778889
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHH
Q 004829 439 IGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIA 518 (728)
Q Consensus 439 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 518 (728)
++..+...+++++|+..+++++.. ..+|....+++.+|.++...|++++|+..+++ . ...
T Consensus 71 la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~---------~~~ 130 (291)
T 3mkr_A 71 FAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----G---------DSL 130 (291)
T ss_dssp HHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----C---------CSH
T ss_pred HHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----C---------CCH
Confidence 999999999999999999998764 11477778899999999999999999999987 1 134
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcH
Q 004829 519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSA 598 (728)
Q Consensus 519 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 598 (728)
.++..+|.++..+|++++|+..|+++++..++. ........+..++...|++++|+.+|+++++. .+
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-----~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------~p 197 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDA-----TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------CS 197 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------SC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc-----HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--------CC
Confidence 578899999999999999999999999885432 11111111223334558999999999999987 22
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHc
Q 004829 599 LFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDD-AIEILEYVVGMREEKL 677 (728)
Q Consensus 599 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~-A~~~~~~al~~~~~~~ 677 (728)
....+++.+|.++..+|++++|+..|++++.+ +|+...++.++|.++...|++.+ +..++++++++.
T Consensus 198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~---- 265 (291)
T 3mkr_A 198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH---- 265 (291)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----
Confidence 24578999999999999999999999999999 88888899999999999999976 568999999853
Q ss_pred CCCChHHHHHHHHHHHHHHHhCChhHHH
Q 004829 678 GTANPDVEDEKRRLAELLKEAGRVRNRK 705 (728)
Q Consensus 678 ~~~~p~~~~~~~~La~~~~~~g~~~~A~ 705 (728)
|+||...+ +..+.+.++++.
T Consensus 266 -P~~~~~~d-------~~~~~~~fd~~~ 285 (291)
T 3mkr_A 266 -RSHPFIKE-------YRAKENDFDRLV 285 (291)
T ss_dssp -TTCHHHHH-------HHHHHHHHHHHH
T ss_pred -CCChHHHH-------HHHHHHHHHHHH
Confidence 66665543 455566667666
No 54
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=7.3e-19 Score=177.80 Aligned_cols=279 Identities=10% Similarity=0.043 Sum_probs=215.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHh
Q 004829 229 TREMISSGENPQKALELAKRAMKSFEICANGKPSLEQ-VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALA 307 (728)
Q Consensus 229 a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 307 (728)
.+.++..| +|++|+..+++... .+|+. ..+...++.+|..+|++++|+..++.. ..+
T Consensus 6 ~~~~~~~g-~y~~ai~~~~~~~~---------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----------~~~-- 63 (291)
T 3mkr_A 6 VKNAFYIG-SYQQCINEAQRVKP---------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----------SAP-- 63 (291)
T ss_dssp HHHHHHTT-CHHHHHHHHHHSCC---------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----------SCH--
T ss_pred HHHHHHHH-HHHHHHHHHHhccc---------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----------CCh--
Confidence 45677786 89999999887643 22433 346677899999999999999866441 111
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 004829 308 KFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP 387 (728)
Q Consensus 308 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 387 (728)
...++..++..+...+++++|+..+++++.. ..+|....+++.+|.++...|++++|+.++++ +
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~----- 127 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----G----- 127 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----C-----
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----C-----
Confidence 3456888999999999999999999988764 11477778899999999999999999999987 1
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829 388 ASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIG--DAYLSLARFDEAIFSYHKALTAFKS 465 (728)
Q Consensus 388 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~~~ 465 (728)
.. ..++..+|.++...|++++|+..|++++... |.........+ .++...|++++|+..|+++++.
T Consensus 128 ~~---~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--- 195 (291)
T 3mkr_A 128 DS---LECMAMTVQILLKLDRLDLARKELKKMQDQD------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--- 195 (291)
T ss_dssp CS---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---
T ss_pred CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---
Confidence 22 3468899999999999999999999988762 22222221122 3334458999999999999998
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHH
Q 004829 466 AKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQ-AVKLLNKA 544 (728)
Q Consensus 466 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a 544 (728)
.|....+++.+|.++..+|++++|+..|++++.+ .|..+.++.++|.++...|++.+ +..+++++
T Consensus 196 -----~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~---------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 196 -----CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK---------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp -----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7777889999999999999999999999999999 34466789999999999999976 57899999
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829 545 LKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTL 582 (728)
Q Consensus 545 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 582 (728)
+++.|+.+ .+..+..+.+.|+++..-|
T Consensus 262 ~~~~P~~~-----------~~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 262 KDAHRSHP-----------FIKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHCTTCH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCh-----------HHHHHHHHHHHHHHHHHHc
Confidence 99987762 2334455555555554433
No 55
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=5.3e-19 Score=179.38 Aligned_cols=250 Identities=14% Similarity=0.098 Sum_probs=199.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 004829 366 QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLS 445 (728)
Q Consensus 366 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 445 (728)
++++|+.+|.++ |.+|...|++++|+.+|.+++.+....++.+..+.++.++|.+|..
T Consensus 32 ~~~~A~~~~~~a----------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~ 89 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS 89 (292)
T ss_dssp HHHHHHHHHHHH----------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 478888777776 4467789999999999999999988888878889999999999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHH
Q 004829 446 LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKI-GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDI 524 (728)
Q Consensus 446 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 524 (728)
+|++++|+.+|++++.+.... ++....+.++.++|.+|... |++++|+.+|++++.+..... +......++..+
T Consensus 90 ~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~---~~~~~~~~~~~l 164 (292)
T 1qqe_A 90 GGNSVNAVDSLENAIQIFTHR--GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ---SVALSNKCFIKC 164 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC---ChHHHHHHHHHH
Confidence 999999999999999998765 33455678999999999996 999999999999999976532 233456789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Q 004829 525 AAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIAL 604 (728)
Q Consensus 525 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 604 (728)
|.++..+|++++|+.+|++++.+.+...........++..+|.++..+|++++|+.+|++++.+....... .....+
T Consensus 165 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~---~~~~~l 241 (292)
T 1qqe_A 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS---RESNFL 241 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc---HHHHHH
Confidence 99999999999999999999998776533223455678899999999999999999999999875443321 113456
Q ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004829 605 NQMGLACV--QRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTY 653 (728)
Q Consensus 605 ~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~ 653 (728)
..++..+. ..+++++|+..|.+++.+ +|....++..+-..+
T Consensus 242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l--------~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 242 KSLIDAVNEGDSEQLSEHCKEFDNFMRL--------DKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHTTSSCC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCcc--------HHHHHHHHHHHHHHh
Confidence 66677665 457899999999888777 777766666555444
No 56
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.82 E-value=8.7e-19 Score=177.79 Aligned_cols=250 Identities=13% Similarity=0.097 Sum_probs=194.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 004829 408 DYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK 487 (728)
Q Consensus 408 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 487 (728)
++++|+..|.++ |.+|...|++++|+.+|.+++++.... ++.+..+.++.++|.+|..
T Consensus 32 ~~~~A~~~~~~a--------------------~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~ 89 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------------ATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKS 89 (292)
T ss_dssp HHHHHHHHHHHH--------------------HHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHH
Confidence 488888888765 456888999999999999999998775 3455678899999999999
Q ss_pred cCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 004829 488 IGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSM-NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMG 566 (728)
Q Consensus 488 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 566 (728)
+|++++|+.+|++++.+..... +....+.++.++|.+|... |++++|+.+|++++++.+.. +.......++.++|
T Consensus 90 ~g~~~~A~~~~~~Al~l~~~~g---~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~-~~~~~~~~~~~~lg 165 (292)
T 1qqe_A 90 GGNSVNAVDSLENAIQIFTHRG---QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD-QSVALSNKCFIKCA 165 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 9999999999999999987643 3455678999999999996 99999999999999999875 33334467789999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004829 567 VMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVY 646 (728)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 646 (728)
.+|..+|++++|+.+|++++.+....... ......++..+|.++..+|++++|+.+|++++.+..... .......+
T Consensus 166 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~~~l 241 (292)
T 1qqe_A 166 DLKALDGQYIEASDIYSKLIKSSMGNRLS-QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFL 241 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSSCTTT-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhcCCcc-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHHHHHH
Confidence 99999999999999999999874322111 112345789999999999999999999999998732211 01112245
Q ss_pred HHHHHHHH--HcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 004829 647 SNLAGTYD--AMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELL 695 (728)
Q Consensus 647 ~~La~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~ 695 (728)
..++..+. ..+++++|+..|++++. .+|.....+..+-..+
T Consensus 242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~--------l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 242 KSLIDAVNEGDSEQLSEHCKEFDNFMR--------LDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHTTSSC--------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCc--------cHHHHHHHHHHHHHHh
Confidence 56667665 45778888888877765 4577766666665554
No 57
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=1.9e-17 Score=189.22 Aligned_cols=360 Identities=13% Similarity=0.101 Sum_probs=204.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH-------------------------HHHHHHHcC
Q 004829 226 LKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHV-------------------------LAAIHCSLG 280 (728)
Q Consensus 226 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~-------------------------la~~~~~~g 280 (728)
-..++.+...| ++.+|++.|++++-- .... ..+...-. +.. +|.++...|
T Consensus 989 s~~vKaf~~ag-lp~EaieLLEKivl~-~s~f--s~n~~Lqn-lLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 989 SVTVKAFMTAD-LPNELIELLEKIVLD-NSVF--SEHRNLQN-LLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNE 1063 (1630)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHcC-CCcc--cccHHHHH-HHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCC
Confidence 34566777886 999999999999822 1100 01111111 111 255555555
Q ss_pred ChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 004829 281 QYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEA 360 (728)
Q Consensus 281 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 360 (728)
.|++|..+|+++... ...+...+...+++++|+++++++ ....+|..+|.+
T Consensus 1064 lyEEAf~IYkKa~~~----------------~~A~~VLie~i~nldrAiE~Aerv-------------n~p~vWsqLAKA 1114 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDVN----------------TSAVQVLIEHIGNLDRAYEFAERC-------------NEPAVWSQLAKA 1114 (1630)
T ss_pred CHHHHHHHHHHcCCH----------------HHHHHHHHHHHhhHHHHHHHHHhc-------------CCHHHHHHHHHH
Confidence 555555555554211 011122222444445444444432 223455566666
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 004829 361 HVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIG 440 (728)
Q Consensus 361 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 440 (728)
+...|++++|+..|.++ .+ ...+..+|.++...|++++|+++|..|...... ..+...+|
T Consensus 1115 ql~~G~~kEAIdsYiKA-------dD------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-------~~Idt~La 1174 (1630)
T 1xi4_A 1115 QLQKGMVKEAIDSYIKA-------DD------PSSYMEVVQAANTSGNWEELVKYLQMARKKARE-------SYVETELI 1174 (1630)
T ss_pred HHhCCCHHHHHHHHHhc-------CC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-------ccccHHHH
Confidence 66666666666666554 00 123555666666666666666666655443210 01112355
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHH
Q 004829 441 DAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASG 520 (728)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 520 (728)
.+|.+++++++ ++.|. . .+.. ..+..+|..+...|+|++|..+|.++ ..
T Consensus 1175 faYAKl~rlee-le~fI---~---------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA-----------------~n 1223 (1630)
T 1xi4_A 1175 FALAKTNRLAE-LEEFI---N---------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-----------------SN 1223 (1630)
T ss_pred HHHHhhcCHHH-HHHHH---h---------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh-----------------hH
Confidence 56666655553 22221 1 1111 23445666666666666666666653 13
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHH
Q 004829 521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALF 600 (728)
Q Consensus 521 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 600 (728)
|..++.+|..+|++++|++.+++|.. ..+|...+.++...|+|..|..+... +.. .
T Consensus 1224 y~rLA~tLvkLge~q~AIEaarKA~n------------~~aWkev~~acve~~Ef~LA~~cgl~-Iiv-----------~ 1279 (1630)
T 1xi4_A 1224 FGRLASTLVHLGEYQAAVDGARKANS------------TRTWKEVCFACVDGKEFRLAQMCGLH-IVV-----------H 1279 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCC------------HHHHHHHHHHHhhhhHHHHHHHHHHh-hhc-----------C
Confidence 55566666666666666666666521 13455556666666666666655543 211 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHcC
Q 004829 601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA--MGRIDDAIEILEYVVGMREEKLG 678 (728)
Q Consensus 601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~--~g~~~~A~~~~~~al~~~~~~~~ 678 (728)
+..+..++..|...|.+++|+.++++++.+ ++.....+..||.+|.+ -++..+++++|...+.+-+-+
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~L--------eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~-- 1349 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAALGL--------ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL-- 1349 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh--
Confidence 345667888888999999999999999888 66667777777777765 456677777777666532110
Q ss_pred CCChHHHHHHHHHHHHHHHhCChhHHH
Q 004829 679 TANPDVEDEKRRLAELLKEAGRVRNRK 705 (728)
Q Consensus 679 ~~~p~~~~~~~~La~~~~~~g~~~~A~ 705 (728)
.--+....|..+..+|.+-|+++.|+
T Consensus 1350 -r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1350 -RAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred -HHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 01255677889999999999999999
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.82 E-value=2.6e-18 Score=172.57 Aligned_cols=226 Identities=15% Similarity=0.199 Sum_probs=196.2
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChhHHHHHHHHhh
Q 004829 218 NPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCS----LGQYNEAIPVLERSV 293 (728)
Q Consensus 218 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al 293 (728)
+|..+.+++.+|..++..| ++++|+.+|++++. +....+++.+|.+|.. .+++++|+.+|++++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~-----------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 69 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEK-DFTQAKKYFEKACD-----------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC 69 (273)
T ss_dssp ---CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH-----------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-----------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH
Confidence 4567889999999999997 99999999999987 1224678899999999 999999999999998
Q ss_pred hhhhhhcCCchhHhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----hC
Q 004829 294 EIPVLEDGQDHALAKFAGCMQLGDTYAM----LGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ----SL 365 (728)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g 365 (728)
++. + ..+++.+|.+|.. .+++++|+.+|+++++. ....++..+|.+|.. .+
T Consensus 70 ~~~-------~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 70 DLN-------Y----SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----------KYAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp HTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHCSSSCC
T ss_pred HCC-------C----HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----------CCccHHHHHHHHHHcCCCccc
Confidence 762 2 2358999999999 99999999999999876 245789999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 004829 366 QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDS----KGDYEAALEHYVLASMSMAANGHELDVASIDCSIGD 441 (728)
Q Consensus 366 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 441 (728)
++++|+.+|+++++.. ...++..+|.++.. .+++++|+.+|++++.. ....++..+|.
T Consensus 129 ~~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~ 190 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLN----------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--------KDSPGCFNAGN 190 (273)
T ss_dssp CHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC----------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHH
Confidence 9999999999999742 13468899999999 99999999999999854 23578899999
Q ss_pred HHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 004829 442 AYLS----LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK----IGKLRDSKSYCENALKI 504 (728)
Q Consensus 442 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 504 (728)
+|.. .+++++|+.+|+++++. .+ ..++..+|.+|.. .+++++|+.+|+++++.
T Consensus 191 ~~~~g~~~~~~~~~A~~~~~~a~~~--------~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 191 MYHHGEGATKNFKEALARYSKACEL--------EN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHcCCCCCccHHHHHHHHHHHHhC--------CC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 9999 99999999999999986 33 5678999999999 99999999999999998
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.82 E-value=1.7e-19 Score=177.43 Aligned_cols=221 Identities=15% Similarity=0.167 Sum_probs=170.8
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCC
Q 004829 431 DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH 510 (728)
Q Consensus 431 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 510 (728)
..+..+..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----- 87 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALELD----- 87 (243)
T ss_dssp ---------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Confidence 44667889999999999999999999999986 67778899999999999999999999999999983
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829 511 GIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR 590 (728)
Q Consensus 511 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 590 (728)
+....++..+|.++...|++++|+.+|+++++..+.. ..++..+|.++...|++++|+.++++++..
T Consensus 88 ----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-- 154 (243)
T 2q7f_A 88 ----SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-------GDLFYMLGTVLVKLEQPKLALPYLQRAVEL-- 154 (243)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--
T ss_pred ----CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence 2346788999999999999999999999999986544 467889999999999999999999999987
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004829 591 TSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVV 670 (728)
Q Consensus 591 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al 670 (728)
.+....++..+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++
T Consensus 155 ------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 155 ------NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp ------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred ------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2223568899999999999999999999999998 67777799999999999999999999999999
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHhC
Q 004829 671 GMREEKLGTANPDVEDEKRRLAELLKEAG 699 (728)
Q Consensus 671 ~~~~~~~~~~~p~~~~~~~~La~~~~~~g 699 (728)
++. |+...++..++.+....|
T Consensus 221 ~~~--------p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 221 DIQ--------PDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHC--------TTCHHHHHHHTC------
T ss_pred ccC--------cchHHHHHHHHHHHhhcc
Confidence 853 666666766666655443
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.82 E-value=5.7e-18 Score=170.05 Aligned_cols=222 Identities=18% Similarity=0.169 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcC
Q 004829 393 AADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLS----LARFDEAIFSYHKALTAFKSAKG 468 (728)
Q Consensus 393 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 468 (728)
+.+++.+|.++...|++++|+.+|++++. +....+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------ 71 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------ 71 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC------
Confidence 45688999999999999999999999885 3335789999999999 99999999999999886
Q ss_pred CCCHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHH
Q 004829 469 ENHPAVASVFVRLADLYHK----IGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS----MNELEQAVKL 540 (728)
Q Consensus 469 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~ 540 (728)
. ...++..+|.+|.. .+++++|+.+|+++++.. ...++..+|.+|.. .+++++|+.+
T Consensus 72 --~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~ 136 (273)
T 1ouv_A 72 --N--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-----------YAEGCASLGGIYHDGKVVTRDFKKAVEY 136 (273)
T ss_dssp --T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred --C--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-----------CccHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 2 46788999999999 999999999999999861 35688999999999 9999999999
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH---
Q 004829 541 LNKALKIYGKTPGQQSTIAGIEAQMGVMYYM----TGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQ--- 613 (728)
Q Consensus 541 ~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--- 613 (728)
|+++++.. ...++..+|.+|.. .+++++|+.+|+++++. .+ ..++..+|.+|..
T Consensus 137 ~~~a~~~~---------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 137 FTKACDLN---------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KD---SPGCFNAGNMYHHGEG 197 (273)
T ss_dssp HHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTCS
T ss_pred HHHHHhcC---------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCC
Confidence 99999752 14577899999999 99999999999999875 12 4688999999999
Q ss_pred -cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 004829 614 -RYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA----MGRIDDAIEILEYVVGM 672 (728)
Q Consensus 614 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~----~g~~~~A~~~~~~al~~ 672 (728)
.+++++|+.+|+++++. .+ ..+++.||.+|.. .+++++|+.+|++++++
T Consensus 198 ~~~~~~~A~~~~~~a~~~--------~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 198 ATKNFKEALARYSKACEL--------EN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp SCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHhC--------CC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 99999999999999986 33 5588999999999 99999999999999985
No 61
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=8.8e-17 Score=183.72 Aligned_cols=348 Identities=16% Similarity=0.131 Sum_probs=263.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHh
Q 004829 228 QTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALA 307 (728)
Q Consensus 228 ~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 307 (728)
.|..+...| .+++|..+|+++-.. .. .+...+...+++++|+++++++..
T Consensus 1055 IA~Iai~lg-lyEEAf~IYkKa~~~-----------~~-----A~~VLie~i~nldrAiE~Aervn~------------- 1104 (1630)
T 1xi4_A 1055 IANIAISNE-LFEEAFAIFRKFDVN-----------TS-----AVQVLIEHIGNLDRAYEFAERCNE------------- 1104 (1630)
T ss_pred HHHHHHhCC-CHHHHHHHHHHcCCH-----------HH-----HHHHHHHHHhhHHHHHHHHHhcCC-------------
Confidence 488888886 899999999987321 11 123334478899999999987532
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 004829 308 KFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP 387 (728)
Q Consensus 308 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 387 (728)
..+|+.+|.++...|++++|+..|.++ .....+..++.++.+.|+|++|+++|..+.+..+...
T Consensus 1105 -p~vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~-- 1168 (1630)
T 1xi4_A 1105 -PAVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY-- 1168 (1630)
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc--
Confidence 235999999999999999999999775 3346778899999999999999999999987653321
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004829 388 ASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK 467 (728)
Q Consensus 388 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 467 (728)
+...+|.+|.+.+++++ ++.|.. .+.. ..+..+|..+...|+|++|..+|.++
T Consensus 1169 -------Idt~LafaYAKl~rlee-le~fI~----------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA-------- 1221 (1630)
T 1xi4_A 1169 -------VETELIFALAKTNRLAE-LEEFIN----------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-------- 1221 (1630)
T ss_pred -------ccHHHHHHHHhhcCHHH-HHHHHh----------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh--------
Confidence 13358999999999885 444421 2233 35667999999999999999999986
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 468 GENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547 (728)
Q Consensus 468 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 547 (728)
..|..+|.+|.++|++++|++.+++|.. ..+|...+.++...|+|..|..+... +..
T Consensus 1222 --------~ny~rLA~tLvkLge~q~AIEaarKA~n--------------~~aWkev~~acve~~Ef~LA~~cgl~-Iiv 1278 (1630)
T 1xi4_A 1222 --------SNFGRLASTLVHLGEYQAAVDGARKANS--------------TRTWKEVCFACVDGKEFRLAQMCGLH-IVV 1278 (1630)
T ss_pred --------hHHHHHHHHHHHhCCHHHHHHHHHHhCC--------------HHHHHHHHHHHhhhhHHHHHHHHHHh-hhc
Confidence 2578899999999999999999998832 36788899999999999999987763 322
Q ss_pred HhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 004829 548 YGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR--YTINEAADLFE 625 (728)
Q Consensus 548 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~ 625 (728)
. +..+..++..|...|.|++|+.++++++.+ .+.....+..+|.+|.+- ++..+++++|.
T Consensus 1279 ~----------~deLeeli~yYe~~G~feEAI~LlE~aL~L--------eraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1279 H----------ADELEELINYYQDRGYFEELITMLEAALGL--------ERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred C----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2 234457899999999999999999999977 344456777788777764 47778888888
Q ss_pred HHHHHHHHhcCCCCh-----hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH------HHHHcCCCChHHHHHHHHHHHH
Q 004829 626 EARTILEKEYGPYHH-----DTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM------REEKLGTANPDVEDEKRRLAEL 694 (728)
Q Consensus 626 ~al~~~~~~~~~~~~-----~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~p~~~~~~~~La~~ 694 (728)
..+.+ .+ +....|..+..+|.+-|+++.|+..+-+.... +...+ .++...+.+++....
T Consensus 1341 ~rini--------~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i--~kv~n~elyykai~F 1410 (1630)
T 1xi4_A 1341 SRVNI--------PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII--TKVANVELYYRAIQF 1410 (1630)
T ss_pred Hhccc--------chHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh--cccccHHHHHHHHHH
Confidence 77765 33 45667889999999999999999554443211 11111 235567778887777
Q ss_pred HHHhC
Q 004829 695 LKEAG 699 (728)
Q Consensus 695 ~~~~g 699 (728)
|...+
T Consensus 1411 yl~~~ 1415 (1630)
T 1xi4_A 1411 YLEFK 1415 (1630)
T ss_pred HHhhC
Confidence 77655
No 62
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.81 E-value=5.3e-19 Score=173.82 Aligned_cols=220 Identities=15% Similarity=0.152 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829 392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH 471 (728)
Q Consensus 392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 471 (728)
.+..++.+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.+|++++.. .
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~ 87 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE------NKEDAIPYINFANLLSSVNELERALAFYDKALEL--------D 87 (243)
T ss_dssp --------------------CCTTHHHHHTT------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------C
Confidence 3456889999999999999999999998753 4566789999999999999999999999999998 6
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829 472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 472 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 551 (728)
|....++..+|.++...|++++|+.+++++++.... ...++..+|.++...|++++|+.++++++...+..
T Consensus 88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 158 (243)
T 2q7f_A 88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME---------NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC---------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 777889999999999999999999999999998432 34678999999999999999999999999886544
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 552 PGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTIL 631 (728)
Q Consensus 552 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 631 (728)
..++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.+|++++++
T Consensus 159 -------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~- 222 (243)
T 2q7f_A 159 -------TEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI- 222 (243)
T ss_dssp -------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH-
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc-
Confidence 567889999999999999999999999987 2223568999999999999999999999999998
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcC
Q 004829 632 EKEYGPYHHDTLGVYSNLAGTYDAMG 657 (728)
Q Consensus 632 ~~~~~~~~~~~~~~~~~La~~~~~~g 657 (728)
.|+...++..++.+....+
T Consensus 223 -------~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 223 -------QPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp -------CTTCHHHHHHHTC------
T ss_pred -------CcchHHHHHHHHHHHhhcc
Confidence 7777777777776655444
No 63
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.81 E-value=9e-19 Score=175.77 Aligned_cols=258 Identities=13% Similarity=0.001 Sum_probs=203.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004829 400 GLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFV 479 (728)
Q Consensus 400 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 479 (728)
+..+...|++++|+..|.+++... ...++....++..+|.++...|++++|+.+|++++.+ .|....++.
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~ 81 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASR--ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFN 81 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHH
T ss_pred eeccCccchHHHHHHHHHHHHhcc--cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHH
Confidence 334455688999999999987541 1234678899999999999999999999999999998 777788999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHH
Q 004829 480 RLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIA 559 (728)
Q Consensus 480 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 559 (728)
.+|.+|...|++++|+.+|++++.+. +....++..+|.+|...|++++|+.+|++++++.+.. .
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-------~ 145 (275)
T 1xnf_A 82 YLGIYLTQAGNFDAAYEAFDSVLELD---------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND-------P 145 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcC---------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------h
Confidence 99999999999999999999999983 2235789999999999999999999999999986554 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829 560 GIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYH 639 (728)
Q Consensus 560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 639 (728)
..... ..++...|++++|+.++++++... +... ....++.++...++.++|+..+++++...... .
T Consensus 146 ~~~~~-~~~~~~~~~~~~A~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~ 211 (275)
T 1xnf_A 146 FRSLW-LYLAEQKLDEKQAKEVLKQHFEKS----DKEQ-----WGWNIVEFYLGNISEQTLMERLKADATDNTSL----A 211 (275)
T ss_dssp HHHHH-HHHHHHHHCHHHHHHHHHHHHHHS----CCCS-----THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----H
T ss_pred HHHHH-HHHHHHhcCHHHHHHHHHHHHhcC----Ccch-----HHHHHHHHHHHhcCHHHHHHHHHHHhcccccc----c
Confidence 22222 334467799999999999998762 1111 22347778888999999999999988763332 3
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHH
Q 004829 640 HDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSL 709 (728)
Q Consensus 640 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l 709 (728)
+....++..+|.+|...|++++|+.+|++++.+ +|... ...+.++...|++++|+ ..+
T Consensus 212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~---~~~~~~~~~l~~~~~a~-~~~ 269 (275)
T 1xnf_A 212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNF---VEHRYALLELSLLGQDQ-DDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CCTTC---HHHHHHHHHHHHHHHC-----
T ss_pred ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CchhH---HHHHHHHHHHHHHHhhH-HHH
Confidence 345789999999999999999999999999984 24332 23367888999999999 443
No 64
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.80 E-value=2e-17 Score=169.11 Aligned_cols=245 Identities=13% Similarity=0.132 Sum_probs=193.5
Q ss_pred cCCHHHHHHHHHHHHHHHHh-----cCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004829 406 KGDYEAALEHYVLASMSMAA-----NGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVR 480 (728)
Q Consensus 406 ~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 480 (728)
.|++++|.++++++...... .++.......+...|.+|...|++++|+.+|.+++++.... .+....+.++.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~ 81 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFEQ 81 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHH
Confidence 45667777777777665432 12333344556667889999999999999999999998876 345567889999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHH
Q 004829 481 LADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAG 560 (728)
Q Consensus 481 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 560 (728)
+|.+|..+|++++|+.+|++++.++.... +....+.++.++|.+|.. |++++|+.+|++++.+.+.. +.......
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g---~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-~~~~~~~~ 156 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVENG---TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE-ERLRQAAE 156 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-CChhHHHH
Confidence 99999999999999999999999987754 345578899999999999 99999999999999999875 44455678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004829 561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHH 640 (728)
Q Consensus 561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 640 (728)
++.++|.+|..+|++++|+.+|++++.+...... ......++..+|.++..+|++++|+.+|++++ +.... ...
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~---~~~ 230 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN--YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF---SGS 230 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS---TTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC---CCC
Confidence 8999999999999999999999999999877654 33456688999999999999999999999999 62110 011
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHH
Q 004829 641 DTLGVYSNLAGTYDAMGRIDDAIE 664 (728)
Q Consensus 641 ~~~~~~~~La~~~~~~g~~~~A~~ 664 (728)
.....+..++..+ ..|+.+.+..
T Consensus 231 ~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 231 EDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHH-HhcCHHHHHH
Confidence 2334556666666 5677655544
No 65
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.80 E-value=4.9e-18 Score=168.13 Aligned_cols=204 Identities=12% Similarity=0.022 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC
Q 004829 432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG 511 (728)
Q Consensus 432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 511 (728)
.+.++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------ 101 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD------ 101 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------
Confidence 4788999999999999999999999999988 67778889999999999999999999999999883
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT 591 (728)
Q Consensus 512 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 591 (728)
+....++..+|.++...|++++|+.+|++++. .+..+....++..+|.++...|++++|+.+|++++..
T Consensus 102 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 170 (252)
T 2ho1_A 102 ---SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--- 170 (252)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred ---cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence 22456889999999999999999999999886 1233445678889999999999999999999999887
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 592 SGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG 671 (728)
Q Consensus 592 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 671 (728)
.+....++..+|.++...|++++|+.+|++++.. .|....++..++.++...|++++|..+++++++
T Consensus 171 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 171 -----NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp -----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2223568899999999999999999999999886 666677889999999999999999999999988
Q ss_pred HH
Q 004829 672 MR 673 (728)
Q Consensus 672 ~~ 673 (728)
+.
T Consensus 238 ~~ 239 (252)
T 2ho1_A 238 LY 239 (252)
T ss_dssp HC
T ss_pred HC
Confidence 53
No 66
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.79 E-value=1.7e-17 Score=160.72 Aligned_cols=206 Identities=15% Similarity=0.114 Sum_probs=178.3
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829 429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP 508 (728)
Q Consensus 429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 508 (728)
.+....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--- 72 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--- 72 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---
Confidence 5677888999999999999999999999999998 67778889999999999999999999999999983
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 509 NHGIPSEEIASGLIDIAAIYQSM-NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAIS 587 (728)
Q Consensus 509 ~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 587 (728)
+....++..+|.++... |++++|+.++++++. . +..+....++..+|.++...|++++|+.+++++++
T Consensus 73 ------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 73 ------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-D----PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp ------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S----TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22456789999999999 999999999999987 1 23344567888999999999999999999999988
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCChHHHHHHH
Q 004829 588 KFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHH-DTLGVYSNLAGTYDAMGRIDDAIEIL 666 (728)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~La~~~~~~g~~~~A~~~~ 666 (728)
. .+....++..+|.++...|++++|+.+|++++.. .| ....++..++.++...|++++|..++
T Consensus 142 ~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 142 A--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR--------VEVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp H--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred h--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 7 2223578899999999999999999999999987 55 55567788899999999999999999
Q ss_pred HHHHHH
Q 004829 667 EYVVGM 672 (728)
Q Consensus 667 ~~al~~ 672 (728)
+.+...
T Consensus 206 ~~~~~~ 211 (225)
T 2vq2_A 206 AQLQAN 211 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988764
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.79 E-value=5.8e-18 Score=158.84 Aligned_cols=167 Identities=23% Similarity=0.288 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC
Q 004829 432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG 511 (728)
Q Consensus 432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 511 (728)
.+.+|+++|.+|..+|++++|+.+|++++++ +|....++..+|.+|...|++++|+..+.+++...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~------ 69 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD------ 69 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------
Confidence 3568999999999999999999999999999 88889999999999999999999999999999983
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT 591 (728)
Q Consensus 512 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 591 (728)
+....++..+|.++...++++.|...+.+++.+.+.. ..++..+|.+|..+|++++|+.+|++++++
T Consensus 70 ---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--- 136 (184)
T 3vtx_A 70 ---TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY-------ADAYYKLGLVYDSMGEHDKAIEAYEKTISI--- 136 (184)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred ---chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHhCCchhHHHHHHHHHHh---
Confidence 2345778899999999999999999999999986655 567889999999999999999999999988
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 592 SGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 592 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
.+....++..+|.+|..+|++++|+.+|++++++
T Consensus 137 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 137 -----KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 3445689999999999999999999999999998
No 68
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.79 E-value=9e-18 Score=166.19 Aligned_cols=211 Identities=16% Similarity=0.124 Sum_probs=185.1
Q ss_pred CHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004829 471 HPAV-ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYG 549 (728)
Q Consensus 471 ~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 549 (728)
.|.. +.++..+|.++...|++++|+.+|++++... +....++..+|.++...|++++|+.+|+++++..+
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 102 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID---------PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS 102 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5554 8899999999999999999999999999983 23467899999999999999999999999998855
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 550 KTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEART 629 (728)
Q Consensus 550 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 629 (728)
.. ..++..+|.+|...|++++|+.+|++++. ....+....++..+|.++...|++++|+.+|++++.
T Consensus 103 ~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 103 RN-------ARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Cc-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 43 56788999999999999999999999986 111344568899999999999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHH
Q 004829 630 ILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSL 709 (728)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l 709 (728)
. .|....++..+|.+|...|++++|+.+|++++.. .|....++..++.++...|++++|. ..+
T Consensus 170 ~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~-~~~ 232 (252)
T 2ho1_A 170 L--------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAA-SYG 232 (252)
T ss_dssp H--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHH-HHH
T ss_pred c--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHH-HHH
Confidence 8 6666778999999999999999999999999873 4566778899999999999999999 999
Q ss_pred HHHHhhccccc
Q 004829 710 VTFLDSNSQNL 720 (728)
Q Consensus 710 ~~ll~~~~~~~ 720 (728)
+.+++..|...
T Consensus 233 ~~~~~~~p~~~ 243 (252)
T 2ho1_A 233 LQLKRLYPGSL 243 (252)
T ss_dssp HHHHHHCTTSH
T ss_pred HHHHHHCCCCH
Confidence 99999887753
No 69
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.79 E-value=2.7e-18 Score=172.20 Aligned_cols=258 Identities=13% Similarity=0.025 Sum_probs=203.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHH
Q 004829 358 AEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDC 437 (728)
Q Consensus 358 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 437 (728)
+..+...|++++|+..|++++...+ ...+..+.++..+|.++...|++++|+.+|++++.. .|....++.
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~ 81 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRA----LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFN 81 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCCHHHHH
T ss_pred eeccCccchHHHHHHHHHHHHhccc----ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc------CCCcHHHHH
Confidence 3344456889999999999987521 123455678999999999999999999999999876 455678999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHH
Q 004829 438 SIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEI 517 (728)
Q Consensus 438 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 517 (728)
.+|.++...|++++|+.+|++++.+ .|....++..+|.+|...|++++|+.+|++++.+... .+
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~-- 145 (275)
T 1xnf_A 82 YLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN------DP-- 145 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH--
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------Ch--
Confidence 9999999999999999999999998 7777889999999999999999999999999998422 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004829 518 ASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS 597 (728)
Q Consensus 518 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 597 (728)
.....+ .++...|++++|+..+.+++...+.. . ....++.++...+++++|+..+++++...... .
T Consensus 146 -~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~ 211 (275)
T 1xnf_A 146 -FRSLWL-YLAEQKLDEKQAKEVLKQHFEKSDKE---Q-----WGWNIVEFYLGNISEQTLMERLKADATDNTSL----A 211 (275)
T ss_dssp -HHHHHH-HHHHHHHCHHHHHHHHHHHHHHSCCC---S-----THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----H
T ss_pred -HHHHHH-HHHHHhcCHHHHHHHHHHHHhcCCcc---h-----HHHHHHHHHHHhcCHHHHHHHHHHHhcccccc----c
Confidence 222223 34466799999999999999875543 1 12357788888999999999999987653321 1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHH
Q 004829 598 ALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEIL 666 (728)
Q Consensus 598 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~ 666 (728)
+....++..+|.++...|++++|+.+|++++.+ +|... ...+.++..+|++++|+..|
T Consensus 212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CCTTC---HHHHHHHHHHHHHHHC----
T ss_pred ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CchhH---HHHHHHHHHHHHHHhhHHHH
Confidence 233678999999999999999999999999987 55432 33477888899999998887
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.79 E-value=1.8e-18 Score=187.93 Aligned_cols=202 Identities=13% Similarity=0.097 Sum_probs=183.8
Q ss_pred CCChhHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 427 GHELDVASIDCSIGDAYLSLARF-DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIY 505 (728)
Q Consensus 427 ~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 505 (728)
...+..+.+++.+|.++...|++ ++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++++++.
T Consensus 96 ~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 167 (474)
T 4abn_A 96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC 167 (474)
T ss_dssp TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34567788999999999999999 9999999999998 88888999999999999999999999999999872
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHc----
Q 004829 506 GKPNHGIPSEEIASGLIDIAAIYQSM---------NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMT---- 572 (728)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~---- 572 (728)
|. ..++..+|.++... |++++|+.+|++++++.+.. ..++..+|.+|..+
T Consensus 168 ---------p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~ 230 (474)
T 4abn_A 168 ---------KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD-------GRSWYILGNAYLSLYFNT 230 (474)
T ss_dssp ---------CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHT
T ss_pred ---------CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHhh
Confidence 22 47899999999999 99999999999999987655 57889999999999
Q ss_pred ----CCHHHHHHHHHHHHHHHHHhCCCCcH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004829 573 ----GNYSDSYNTLKSAISKFRTSGEKKSA---LFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGV 645 (728)
Q Consensus 573 ----g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 645 (728)
|++++|+.+|++++++ .+ ....+++.+|.+|...|++++|+.+|++++++ +|+...+
T Consensus 231 ~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~a 294 (474)
T 4abn_A 231 GQNPKISQQALSAYAQAEKV--------DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--------DPAWPEP 294 (474)
T ss_dssp TCCHHHHHHHHHHHHHHHHH--------CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred ccccchHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence 9999999999999998 33 56789999999999999999999999999999 8888889
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 004829 646 YSNLAGTYDAMGRIDDAIEILEYV 669 (728)
Q Consensus 646 ~~~La~~~~~~g~~~~A~~~~~~a 669 (728)
+..++.++..+|++++|+..+.+.
T Consensus 295 ~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 295 QQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999877654
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.79 E-value=8.1e-18 Score=157.83 Aligned_cols=167 Identities=16% Similarity=0.276 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004829 474 VASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPG 553 (728)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 553 (728)
.+.+|+++|.+|...|++++|+.+|++++++ .|....++..+|.+|...|++++|+..+.+++...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-- 72 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA---------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-- 72 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh--
Confidence 3568999999999999999999999999999 34467889999999999999999999999999876554
Q ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 554 QQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK 633 (728)
Q Consensus 554 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 633 (728)
..++..+|.++...++++.|...+.+++.+ .+....++..+|.++..+|++++|+..|++++++
T Consensus 73 -----~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--- 136 (184)
T 3vtx_A 73 -----AEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--- 136 (184)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---
Confidence 567889999999999999999999999987 3334578999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 634 EYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM 672 (728)
Q Consensus 634 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~ 672 (728)
+|....++.++|.+|..+|++++|+.+|++++++
T Consensus 137 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 137 -----KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 8888899999999999999999999999999984
No 72
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.79 E-value=2.6e-17 Score=159.36 Aligned_cols=211 Identities=17% Similarity=0.103 Sum_probs=184.2
Q ss_pred CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
.|....++..+|.++...|++++|+.++++++... +....++..+|.++...|++++|+.+|++++...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 74 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD---------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 67788999999999999999999999999999983 234678899999999999999999999999988654
Q ss_pred CCCCCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 551 TPGQQSTIAGIEAQMGVMYYMT-GNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEART 629 (728)
Q Consensus 551 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 629 (728)
. ..++..+|.++... |++++|+.++++++. . ...+....++..+|.++...|++++|+.+|++++.
T Consensus 75 ~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 75 S-------AEINNNYGWFLCGRLNRPAESMAYFDKALA----D--PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp C-------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----S--TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----C--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 56788999999999 999999999999987 1 11233467899999999999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHHhCChhHHHHHH
Q 004829 630 ILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANP-DVEDEKRRLAELLKEAGRVRNRKSRS 708 (728)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~ 708 (728)
. .|....++..+|.++...|++++|+.++++++.+. | .....+..++.++...|+.++|. .+
T Consensus 142 ~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~-~~ 204 (225)
T 2vq2_A 142 A--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV--------EVLQADDLLLGWKIAKALGNAQAAY-EY 204 (225)
T ss_dssp H--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHH-HH
T ss_pred h--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHhcCcHHHHH-HH
Confidence 8 67777899999999999999999999999999864 4 45566788899999999999999 99
Q ss_pred HHHHHhhccccc
Q 004829 709 LVTFLDSNSQNL 720 (728)
Q Consensus 709 l~~ll~~~~~~~ 720 (728)
++.+....|...
T Consensus 205 ~~~~~~~~p~~~ 216 (225)
T 2vq2_A 205 EAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHHCTTCH
T ss_pred HHHHHHhCCCCH
Confidence 999888777653
No 73
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.78 E-value=4.2e-17 Score=166.66 Aligned_cols=248 Identities=14% Similarity=0.093 Sum_probs=193.7
Q ss_pred cCChhHHHHHHHHhhhhhhhh-cC-CchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 004829 279 LGQYNEAIPVLERSVEIPVLE-DG-QDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRY 356 (728)
Q Consensus 279 ~g~~~~A~~~~~~al~~~~~~-~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 356 (728)
.|++++|..+++++.+..... .. .......+..+...|.+|...|++++|+.+|.+++.+.... .+....+.++..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~ 81 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFEQ 81 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHH
Confidence 466777777777776654311 11 11222234457777889999999999999999999998764 233456789999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHH
Q 004829 357 VAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASID 436 (728)
Q Consensus 357 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 436 (728)
+|.+|..+|++++|+.+|++++.+.+....+ ...+.++..+|.+|.. |++++|+.+|++++.+....++......++
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~--~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~ 158 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTP--DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELI 158 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 9999999999999999999999998876532 3456789999999999 999999999999999988877767778899
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHH
Q 004829 437 CSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEE 516 (728)
Q Consensus 437 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 516 (728)
.++|.+|..+|++++|+.+|++++.+.... ...+....++..+|.++..+|++++|+.+|++++ +..... ...
T Consensus 159 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~----~~~ 231 (307)
T 2ifu_A 159 GKASRLLVRQQKFDEAAASLQKEKSMYKEM--ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS----GSE 231 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST----TSH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC----CCH
Confidence 999999999999999999999999998765 2234456688999999999999999999999999 643321 222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHH
Q 004829 517 IASGLIDIAAIYQSMNELEQAVK 539 (728)
Q Consensus 517 ~~~~~~~la~~~~~~g~~~~A~~ 539 (728)
....+..++..+ ..|+.+.+..
T Consensus 232 e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 232 DCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHH-HhcCHHHHHH
Confidence 344566666655 5667654444
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.78 E-value=4.3e-18 Score=184.91 Aligned_cols=218 Identities=14% Similarity=0.150 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh-hHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHH
Q 004829 241 KALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQY-NEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTY 319 (728)
Q Consensus 241 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 319 (728)
.....+++++..++...... +..+.+++.+|.+|...|+| ++|+.+|++++++. +..+ .+++.+|.+|
T Consensus 79 ~~~~~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-----p~~~----~a~~~lg~~~ 147 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-----PELV----EAWNQLGEVY 147 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-----CCCH----HHHHHHHHHH
Confidence 45556666776666554332 45577899999999999999 99999999999875 4433 3599999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHHcCCCCcH
Q 004829 320 AMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQS---------LQFDEAEKICQMALDIHRENTSPASI 390 (728)
Q Consensus 320 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~ 390 (728)
...|++++|+.+|++++++ .|. ..++..+|.+|... |++++|+.+|++++++.+..
T Consensus 148 ~~~g~~~~A~~~~~~al~~--------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------ 212 (474)
T 4abn_A 148 WKKGDVTSAHTCFSGALTH--------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD------ 212 (474)
T ss_dssp HHHTCHHHHHHHHHHHHTT--------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC------
T ss_pred HHcCCHHHHHHHHHHHHhh--------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC------
Confidence 9999999999999999988 566 58999999999999 99999999999999986543
Q ss_pred HHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHhcCCCh---hHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829 391 EEAADRRLMGLICDSK--------GDYEAALEHYVLASMSMAANGHEL---DVASIDCSIGDAYLSLARFDEAIFSYHKA 459 (728)
Q Consensus 391 ~~a~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~a 459 (728)
..++..+|.+|... |++++|+.+|++++.+ .| ....+++++|.+|...|++++|+.+|+++
T Consensus 213 --~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 213 --GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV------DRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH------CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh------CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34689999999999 9999999999999987 45 77899999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004829 460 LTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCEN 500 (728)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 500 (728)
+++ .|....++..++.++..+|++++|+..+.+
T Consensus 285 l~l--------~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 285 AAL--------DPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999 888889999999999999999999876654
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.77 E-value=7.8e-18 Score=189.88 Aligned_cols=176 Identities=20% Similarity=0.246 Sum_probs=161.9
Q ss_pred CCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004829 470 NHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYG 549 (728)
Q Consensus 470 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 549 (728)
..|..+.++.+||.+|..+|++++|+.+|++++++ .|....++.++|.+|..+|++++|+.+|++++++.+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P 74 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV---------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 37889999999999999999999999999999999 344678999999999999999999999999999976
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 550 KTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEART 629 (728)
Q Consensus 550 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 629 (728)
+. +.++.++|.+|..+|++++|+.+|++++++ .+..+.++.++|.+|..+|++++|+.+|+++++
T Consensus 75 ~~-------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 75 TF-------ADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65 678999999999999999999999999998 445578999999999999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004829 630 ILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKL 677 (728)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~ 677 (728)
+ +|+...++.+||.+|..+|++++|++.|++++++....+
T Consensus 140 l--------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~ 179 (723)
T 4gyw_A 140 L--------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179 (723)
T ss_dssp H--------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHH
T ss_pred h--------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHH
Confidence 9 888889999999999999999999999999999876543
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.77 E-value=6.5e-18 Score=190.51 Aligned_cols=178 Identities=22% Similarity=0.284 Sum_probs=163.0
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004829 514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG 593 (728)
Q Consensus 514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 593 (728)
.|..+.++.+||.+|..+|++++|+.+|++++++.++. ..++.++|.+|..+|++++|+.+|++++++
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~-------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l----- 72 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-------AAAHSNLASVLQQQGKLQEALMHYKEAIRI----- 72 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 56788999999999999999999999999999997665 678999999999999999999999999998
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 594 EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 594 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
.+..+.+++++|.+|..+|++++|+.+|++++++ +|+...++.+||.+|..+|++++|+.+|++++++
T Consensus 73 ---~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l- 140 (723)
T 4gyw_A 73 ---SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL- 140 (723)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 4556789999999999999999999999999999 8888999999999999999999999999999996
Q ss_pred HHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccccC
Q 004829 674 EEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLKED 723 (728)
Q Consensus 674 ~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~~~ 723 (728)
+|+...++.+||.+|..+|++++|. ..++.+++..++.+...
T Consensus 141 -------~P~~~~a~~~L~~~l~~~g~~~~A~-~~~~kal~l~~~~~~~~ 182 (723)
T 4gyw_A 141 -------KPDFPDAYCNLAHCLQIVCDWTDYD-ERMKKLVSIVADQLEKN 182 (723)
T ss_dssp -------CSCCHHHHHHHHHHHHHTTCCTTHH-HHHHHHHHHHHHHHHTT
T ss_pred -------CCCChHHHhhhhhHHHhcccHHHHH-HHHHHHHHhChhHHhhc
Confidence 4778889999999999999999999 88888888877655443
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.75 E-value=2e-17 Score=161.18 Aligned_cols=189 Identities=16% Similarity=0.144 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC
Q 004829 433 ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP-AVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG 511 (728)
Q Consensus 433 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 511 (728)
+..++.+|.++...|++++|+..|++++.+ .| ....+++.+|.++...|++++|+.+|++++..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------- 71 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKL--------TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK------- 71 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-------
Confidence 368899999999999999999999999998 44 44567888999999999999999999999987
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT 591 (728)
Q Consensus 512 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 591 (728)
.|....++..+|.+|..+|++++|+..|++++++.+........++.++..+|.++...|++++|+.+|++++++
T Consensus 72 --~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--- 146 (228)
T 4i17_A 72 --NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--- 146 (228)
T ss_dssp --TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---
T ss_pred --CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---
Confidence 344678899999999999999999999999999876652222234467899999999999999999999999986
Q ss_pred hCCCCcHH--HHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHHHHHhcCCCChhH
Q 004829 592 SGEKKSAL--FGIALNQMGLACVQRYTI---------------------------NEAADLFEEARTILEKEYGPYHHDT 642 (728)
Q Consensus 592 ~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~~~~~ 642 (728)
.+. ...++..+|.+|...|+. ++|+.+|++++++ .|+.
T Consensus 147 -----~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------~p~~ 213 (228)
T 4i17_A 147 -----TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------SPNR 213 (228)
T ss_dssp -----SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CTTC
T ss_pred -----CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCC
Confidence 455 678999999999998888 8899999999998 7776
Q ss_pred HHHHHHHHHHHH
Q 004829 643 LGVYSNLAGTYD 654 (728)
Q Consensus 643 ~~~~~~La~~~~ 654 (728)
..+...++.+..
T Consensus 214 ~~~~~~l~~i~~ 225 (228)
T 4i17_A 214 TEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 667777776643
No 78
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.74 E-value=1.3e-16 Score=158.85 Aligned_cols=224 Identities=14% Similarity=0.114 Sum_probs=182.5
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829 429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP 508 (728)
Q Consensus 429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 508 (728)
.+..+..++.+|..++..|++++|+..|++++... ++++....+++.+|.+|...|++++|+..|++++.....
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~- 84 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI- 84 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC-
Confidence 45567889999999999999999999999999861 223444899999999999999999999999999999533
Q ss_pred CCCCCcHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004829 509 NHGIPSEEIASGLIDIAAIYQS--------MNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYN 580 (728)
Q Consensus 509 ~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 580 (728)
++....+++.+|.++.. .|++++|+..|++++...+.... .. .+..
T Consensus 85 -----~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~-----------------~a~~ 138 (261)
T 3qky_A 85 -----DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL----VD-----------------DATQ 138 (261)
T ss_dssp -----CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT----HH-----------------HHHH
T ss_pred -----CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh----HH-----------------HHHH
Confidence 44567889999999999 99999999999999998776521 11 1111
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc----
Q 004829 581 TLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM---- 656 (728)
Q Consensus 581 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~---- 656 (728)
.+.... ......++.+|.+|...|++++|+..|++++.. .|+++....+++.+|.+|..+
T Consensus 139 ~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~l~~~~~~~g~~~ 202 (261)
T 3qky_A 139 KIRELR-----------AKLARKQYEAARLYERRELYEAAAVTYEAVFDA-----YPDTPWADDALVGAMRAYIAYAEQS 202 (261)
T ss_dssp HHHHHH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHH-----------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCCchHHHHHHHHHHHHHHhcccc
Confidence 111111 113455788999999999999999999999998 233444788999999999987
Q ss_pred ------CChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHH
Q 004829 657 ------GRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRK 705 (728)
Q Consensus 657 ------g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~ 705 (728)
|++++|+.+|+++++.. |++|....+...++.++..+++++++.
T Consensus 203 ~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 203 VRARQPERYRRAVELYERLLQIF-----PDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHC-----TTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hhhcccchHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 89999999999999865 788888999999999999999988766
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.71 E-value=3e-16 Score=152.76 Aligned_cols=188 Identities=11% Similarity=0.012 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCC
Q 004829 267 MCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGET 346 (728)
Q Consensus 267 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 346 (728)
..++.+|.+++..|++++|+..|++++.+.+ +... .+++.+|.++...|++++|+.+|++++..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~----~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------- 71 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTN----NQDS----VTAYNCGVCADNIKKYKEAADYFDIAIKK-------- 71 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----TCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccC----CCCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence 5688999999999999999999999998752 0222 34778999999999999999999999988
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 004829 347 DHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAAN 426 (728)
Q Consensus 347 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 426 (728)
.|....++..+|.+|...|++++|+..|++++.+.|.... .....+.++..+|.++...|++++|+..|++++.+
T Consensus 72 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---- 146 (228)
T 4i17_A 72 NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNAT-IEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---- 146 (228)
T ss_dssp TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----
T ss_pred CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH-HHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc----
Confidence 7889999999999999999999999999999998765421 11223457999999999999999999999999854
Q ss_pred CCChh--HHHHHHHHHHHHHHhCCH---------------------------HHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 004829 427 GHELD--VASIDCSIGDAYLSLARF---------------------------DEAIFSYHKALTAFKSAKGENHPAVASV 477 (728)
Q Consensus 427 ~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~~~~~~~~ 477 (728)
.|. ...++.++|.+|...|+. ++|+.+|++++++ .|....+
T Consensus 147 --~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------~p~~~~~ 216 (228)
T 4i17_A 147 --TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------SPNRTEI 216 (228)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred --CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCCHHH
Confidence 677 789999999999999988 8899999999988 6666666
Q ss_pred HHHHHHHH
Q 004829 478 FVRLADLY 485 (728)
Q Consensus 478 ~~~la~~~ 485 (728)
...++.+.
T Consensus 217 ~~~l~~i~ 224 (228)
T 4i17_A 217 KQMQDQVK 224 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 80
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.70 E-value=9.2e-16 Score=152.72 Aligned_cols=223 Identities=16% Similarity=0.123 Sum_probs=176.4
Q ss_pred hhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004829 263 LEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV 342 (728)
Q Consensus 263 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 342 (728)
+..+..++.+|..++..|+|++|+..|++++... +.++. ...+++.+|.+|...|++++|+..|++++...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--- 82 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEW-AADAQFYLARAYYQNKEYLLAASEYERFIQIY--- 82 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcc-hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC---
Confidence 4456778999999999999999999999999875 33321 24469999999999999999999999999984
Q ss_pred cCCCChHHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Q 004829 343 LGETDHRVGETCRYVAEAHVQ--------SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALE 414 (728)
Q Consensus 343 ~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 414 (728)
++++....+++.+|.++.. .|++++|+..|++++...|..... . .+..
T Consensus 83 --p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--------~--------------~a~~ 138 (261)
T 3qky_A 83 --QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV--------D--------------DATQ 138 (261)
T ss_dssp --TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH--------H--------------HHHH
T ss_pred --CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH--------H--------------HHHH
Confidence 2256778899999999999 999999999999999987765321 1 1111
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc------
Q 004829 415 HYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKI------ 488 (728)
Q Consensus 415 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~------ 488 (728)
.+... .......++.+|.+|...|++++|+..|++++... ++.+....++..+|.+|..+
T Consensus 139 ~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~ 204 (261)
T 3qky_A 139 KIREL---------RAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVR 204 (261)
T ss_dssp HHHHH---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCG
T ss_pred HHHHH---------HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchh
Confidence 11111 12234457899999999999999999999999872 12333788999999999987
Q ss_pred ----CChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 004829 489 ----GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAV 538 (728)
Q Consensus 489 ----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 538 (728)
|++++|+.+|+++++... +++....+...++.++...++++.+.
T Consensus 205 ~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 205 ARQPERYRRAVELYERLLQIFP------DSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp GGHHHHHHHHHHHHHHHHHHCT------TCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hcccchHHHHHHHHHHHHHHCC------CChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 899999999999999853 35566778888888888888776544
No 81
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=1.5e-15 Score=155.16 Aligned_cols=228 Identities=12% Similarity=0.073 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHHHHcCCCCCCCcH
Q 004829 450 DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK-------IGKL-------RDSKSYCENALKIYGKPNHGIPSE 515 (728)
Q Consensus 450 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~~~~~~~~~~~~~ 515 (728)
++|+..|++++.. .|....+++.+|.++.. .|++ ++|+..|++++... .|
T Consensus 33 ~~a~~~~~~al~~--------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--------~p 96 (308)
T 2ond_A 33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LK 96 (308)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------TT
T ss_pred HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------Cc
Confidence 6899999999998 77888899999998874 5886 89999999999831 23
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004829 516 EIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEK 595 (728)
Q Consensus 516 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 595 (728)
....+|..+|.++...|++++|...|++++++.+..+ ..++..+|.++...|++++|...|+++++.. +.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----p~ 166 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP------TLVYIQYMKFARRAEGIKSGRMIFKKAREDA----RT 166 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTST----TC
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCc------cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CC
Confidence 4567899999999999999999999999998644321 1278899999999999999999999998751 11
Q ss_pred CcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004829 596 KSALFGIALNQMGLACVQ-RYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMRE 674 (728)
Q Consensus 596 ~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~ 674 (728)
...++...+.+... .|++++|...|+++++. .|....++..++.++..+|++++|+.+|++++...
T Consensus 167 ----~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~- 233 (308)
T 2ond_A 167 ----RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG- 233 (308)
T ss_dssp ----CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-
T ss_pred ----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-
Confidence 13445555555333 79999999999999998 67777899999999999999999999999999831
Q ss_pred HHcCCCChH-HHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829 675 EKLGTANPD-VEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK 721 (728)
Q Consensus 675 ~~~~~~~p~-~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~ 721 (728)
...|+ ...++..++.++...|++++|. ..++.+++..|+..+
T Consensus 234 ----~l~p~~~~~l~~~~~~~~~~~g~~~~a~-~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 234 ----SLPPEKSGEIWARFLAFESNIGDLASIL-KVEKRRFTAFREEYE 276 (308)
T ss_dssp ----SSCGGGCHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHTTTTTS
T ss_pred ----CCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHcccccc
Confidence 11343 5678888999999999999999 999999999987543
No 82
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.4e-14 Score=155.66 Aligned_cols=240 Identities=16% Similarity=0.171 Sum_probs=205.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCC---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829 354 CRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA---------SIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMA 424 (728)
Q Consensus 354 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 424 (728)
....|..+...|+|++|++.|.++++..+...... ......++..+|.+|...|++++|++++.+++....
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45567778899999999999999998766554321 123345688999999999999999999999998887
Q ss_pred hcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 425 ANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI 504 (728)
Q Consensus 425 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (728)
..+.......+...++.++...|++++|+.++++++...... .+.+..+.++..+|.+|...|+|.+|..++++++..
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 766656666778889999999999999999999999998876 346667889999999999999999999999999999
Q ss_pred HcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829 505 YGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKS 584 (728)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 584 (728)
..... +.+..+.++..++.+|...|++++|..++++++.+...........+.++..+|.++...++|.+|..+|.+
T Consensus 165 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 165 FKKLD---DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HTTSS---CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHhcc---cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 87743 467788999999999999999999999999999999887555556678889999999999999999999999
Q ss_pred HHHHHHHhCCCCcH
Q 004829 585 AISKFRTSGEKKSA 598 (728)
Q Consensus 585 al~~~~~~~~~~~~ 598 (728)
++..+.........
T Consensus 242 a~~~~~~~~~~~~~ 255 (434)
T 4b4t_Q 242 SFESYHNLTTHNSY 255 (434)
T ss_dssp HHHHHHHTTTSSCH
T ss_pred HHHHhhhhhhhhhH
Confidence 99998887765544
No 83
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=3.3e-15 Score=152.62 Aligned_cols=222 Identities=12% Similarity=0.053 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH-------hCCH-------HHHHHHHHHHHH-HHHHhcCCCCHHH
Q 004829 410 EAALEHYVLASMSMAANGHELDVASIDCSIGDAYLS-------LARF-------DEAIFSYHKALT-AFKSAKGENHPAV 474 (728)
Q Consensus 410 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~~~~ 474 (728)
++|+..|++++.. .|....+|+.+|.++.. .|++ ++|+..|++++. + .|..
T Consensus 33 ~~a~~~~~~al~~------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--------~p~~ 98 (308)
T 2ond_A 33 KRVMFAYEQCLLV------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LKKN 98 (308)
T ss_dssp HHHHHHHHHHHHH------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------TTTC
T ss_pred HHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------Cccc
Confidence 6888999999876 36677889999988864 5886 899999999998 6 6777
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004829 475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ 554 (728)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 554 (728)
..++..+|.++...|++++|...|++++++... .+. .+|..+|.++...|++++|+..|+++++..+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--- 167 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI------DPT--LVYIQYMKFARRAEGIKSGRMIFKKAREDARTR--- 167 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS------CTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC---
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc------Ccc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---
Confidence 889999999999999999999999999986211 111 278999999999999999999999999765432
Q ss_pred CCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 555 QSTIAGIEAQMGVMYY-MTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK 633 (728)
Q Consensus 555 ~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 633 (728)
..++...+.+.. ..|++++|..+|+++++.. +....++..+|.++...|++++|..+|++++...
T Consensus 168 ----~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-- 233 (308)
T 2ond_A 168 ----HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-- 233 (308)
T ss_dssp ----THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS--
T ss_pred ----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--
Confidence 234444444433 3799999999999999973 2235788999999999999999999999999840
Q ss_pred hcCCCCh-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 634 EYGPYHH-DTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 634 ~~~~~~~-~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
.-.| ....++..++..+...|++++|..+++++++..
T Consensus 234 ---~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 234 ---SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp ---SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred ---CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 0134 356688889999999999999999999999865
No 84
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.66 E-value=2.1e-14 Score=145.52 Aligned_cols=199 Identities=10% Similarity=-0.050 Sum_probs=162.9
Q ss_pred CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
.+.....+...+..+...|++++|+.+++++++..... .........+..+|.++...|++++|+.+|++++.+...
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 147 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH---PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC---hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 34455667778899999999999999999999875431 112234566778999999999999999999999987665
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
. ......+.++..+|.+|..+|++++|+.+|++++++.+..... ......+++++|.+|..+|++++|+.+|++++.+
T Consensus 148 ~-~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~-~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 148 G-IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN-EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp S-SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc-ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4 3344467789999999999999999999999999988776543 2223478999999999999999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHH
Q 004829 631 LEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDA-IEILEYVVGMREEK 676 (728)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A-~~~~~~al~~~~~~ 676 (728)
.... ........+++++|.+|..+|++++| ..+|++++.+.+..
T Consensus 226 ~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 226 SCRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHT--TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhc--CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 7542 22344678999999999999999999 88899999988654
No 85
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.65 E-value=4.5e-15 Score=159.15 Aligned_cols=150 Identities=11% Similarity=-0.054 Sum_probs=140.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004829 565 MGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLG 644 (728)
Q Consensus 565 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 644 (728)
.+..+..+|+|++|+.++++++++.....+..++..+.++.+||.+|..+|+|++|+.++++++++.+..+|++||+++.
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 34556789999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhh
Q 004829 645 VYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDS 715 (728)
Q Consensus 645 ~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~ 715 (728)
.+.+||.+|..+|++++|+.+|++|+++.+..+|++||.+.+....|+.++..+|++++|. ..+..+.+.
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae-~~~~~~~~~ 464 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE-FMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 655555443
No 86
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.65 E-value=9.4e-17 Score=165.78 Aligned_cols=328 Identities=15% Similarity=0.105 Sum_probs=151.9
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHH
Q 004829 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGD 317 (728)
Q Consensus 238 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~ 317 (728)
+.++|.+++++.= +| .+|..+|.++...|++++|+..|.++- . ...+..++.
T Consensus 18 ~ld~A~~fae~~~-----------~~---~vWs~La~A~l~~g~~~eAIdsfika~----------D----~~~y~~V~~ 69 (449)
T 1b89_A 18 NLDRAYEFAERCN-----------EP---AVWSQLAKAQLQKGMVKEAIDSYIKAD----------D----PSSYMEVVQ 69 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhCC-----------Ch---HHHHHHHHHHHHcCCHHHHHHHHHcCC----------C----HHHHHHHHH
Confidence 7888888888771 12 368899999999999999999997642 1 124888899
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 004829 318 TYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRR 397 (728)
Q Consensus 318 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~ 397 (728)
++...|++++|+.+++.+++. .+. ..+...++.+|.+.|++.++.++++. +. ..++.
T Consensus 70 ~ae~~g~~EeAi~yl~~ark~--------~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~----------pn----~~a~~ 126 (449)
T 1b89_A 70 AANTSGNWEELVKYLQMARKK--------ARE-SYVETELIFALAKTNRLAELEEFING----------PN----NAHIQ 126 (449)
T ss_dssp ------------------------------------------------CHHHHTTTTTC----------C----------
T ss_pred HHHhCCCHHHHHHHHHHHHHh--------Ccc-chhHHHHHHHHHHhCCHHHHHHHHcC----------Cc----HHHHH
Confidence 999999999999999988775 222 45677789999999999998887752 11 12699
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 004829 398 LMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASV 477 (728)
Q Consensus 398 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 477 (728)
.+|..++..|.|++|..+|.++ ..+..+|.++..+|++++|++.++++. . ..+
T Consensus 127 ~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~---~~~ 179 (449)
T 1b89_A 127 QVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKAN----------S---TRT 179 (449)
T ss_dssp ----------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHT----------C---HHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcC----------C---chh
Confidence 9999999999999999999865 367899999999999999999999981 2 456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCc
Q 004829 478 FVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQST 557 (728)
Q Consensus 478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 557 (728)
|..+..++...|+++.|..+... +. .+++. +..+..+|.+.|++++|+.++++++.+.+..
T Consensus 180 Wk~v~~aCv~~~ef~lA~~~~l~---L~-------~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah------ 240 (449)
T 1b89_A 180 WKEVCFACVDGKEFRLAQMCGLH---IV-------VHADE---LEELINYYQDRGYFEELITMLEAALGLERAH------ 240 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHTTTT---TT-------TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHH---HH-------hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH------
Confidence 78888999999999999666554 11 13433 3458889999999999999999998664333
Q ss_pred HHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------
Q 004829 558 IAGIEAQMGVMYYM--TGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEART------ 629 (728)
Q Consensus 558 ~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------ 629 (728)
..++..+|.+|.+ .++..+.++.|...+.+-+-+.. -..+..|..+..+|...++|+.|+...-+...
T Consensus 241 -~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~---~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~ 316 (449)
T 1b89_A 241 -MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA---AEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEG 316 (449)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHH---HHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHH
T ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhH
Confidence 5677778877754 45666777776665554210000 01234677888999999999999875443210
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004829 630 ILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVV 670 (728)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al 670 (728)
.+.++.. .+...+.++.....|. +....++..+..++
T Consensus 317 ~f~~~~~--kv~n~elyYkai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 317 QFKDIIT--KVANVELYYRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp HHHHHHH--HCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred HHHHHHh--chhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 0111100 1223456666666666 44455555555555
No 87
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.65 E-value=2e-14 Score=136.59 Aligned_cols=193 Identities=16% Similarity=0.141 Sum_probs=159.0
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 004829 320 AMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLM 399 (728)
Q Consensus 320 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l 399 (728)
+..|++++|...++.... +.+....++..+|.++...|++++|+.++++++.+...... ....+.++..+
T Consensus 3 ~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l 72 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD--HTAEHRALHQV 72 (203)
T ss_dssp ----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHH
Confidence 467899999985544321 24467889999999999999999999999999999887653 45567789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 004829 400 GLICDSKGDYEAALEHYVLASMSMAANGHEL-DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVF 478 (728)
Q Consensus 400 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 478 (728)
|.++...|++++|+.++.+++.+....++.+ ..+.++.++|.++...|++++|+.++++++.+.+.. .+......++
T Consensus 73 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~ 150 (203)
T 3gw4_A 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIACAF 150 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHHHHH
Confidence 9999999999999999999999998887554 778899999999999999999999999999987765 3345567788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHH
Q 004829 479 VRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAI 527 (728)
Q Consensus 479 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 527 (728)
..+|.++...|++++|..++++++.+.+... +......++..++.+
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRARDIFAELE---DSEAVNELMTRLNGL 196 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHhcccch
Confidence 9999999999999999999999999988754 344555566555544
No 88
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.65 E-value=1.5e-14 Score=137.44 Aligned_cols=195 Identities=10% Similarity=0.121 Sum_probs=157.1
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHH
Q 004829 443 YLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLI 522 (728)
Q Consensus 443 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 522 (728)
++..|++++|...++.... +......++..+|.++...|++++|+.++++++.+.+... +.+....++.
T Consensus 2 ~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~ 70 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG---DHTAEHRALH 70 (203)
T ss_dssp -----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC---CHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC---CcHHHHHHHH
Confidence 3567899999885544322 2446788999999999999999999999999999998754 4677889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q 004829 523 DIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGI 602 (728)
Q Consensus 523 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 602 (728)
.+|.++...|++++|+.++++++.+.............++..+|.++...|++++|+.++++++.+.+..+. ....+.
T Consensus 71 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~ 148 (203)
T 3gw4_A 71 QVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD--QVAIAC 148 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc--hHHHHH
Confidence 999999999999999999999999998763234467788999999999999999999999999999877654 344577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004829 603 ALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGT 652 (728)
Q Consensus 603 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~ 652 (728)
++..+|.++...|++++|+.++++++.+.+.... ......++..++.+
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED--SEAVNELMTRLNGL 196 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHhcccch
Confidence 8899999999999999999999999999877532 22334444444443
No 89
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.64 E-value=8.8e-17 Score=165.97 Aligned_cols=322 Identities=16% Similarity=0.096 Sum_probs=149.5
Q ss_pred HHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 004829 275 IHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETC 354 (728)
Q Consensus 275 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 354 (728)
+....|++++|.+++++.- ++ .+|..||.++...|++++|++.|.++ .....+
T Consensus 12 ll~~~~~ld~A~~fae~~~----------~~----~vWs~La~A~l~~g~~~eAIdsfika-------------~D~~~y 64 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERCN----------EP----AVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSY 64 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhCC----------Ch----HHHHHHHHHHHHcCCHHHHHHHHHcC-------------CCHHHH
Confidence 3456788999999998861 12 25999999999999999999999763 122467
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHH
Q 004829 355 RYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVAS 434 (728)
Q Consensus 355 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 434 (728)
..++..+...|+|++|+.+++.+++..+. +.+...++.+|.+.|++.++.+++.. |.. .
T Consensus 65 ~~V~~~ae~~g~~EeAi~yl~~ark~~~~---------~~i~~~Li~~Y~Klg~l~e~e~f~~~-----------pn~-~ 123 (449)
T 1b89_A 65 MEVVQAANTSGNWEELVKYLQMARKKARE---------SYVETELIFALAKTNRLAELEEFING-----------PNN-A 123 (449)
T ss_dssp -----------------------------------------------------CHHHHTTTTTC-----------C----
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCcc---------chhHHHHHHHHHHhCCHHHHHHHHcC-----------CcH-H
Confidence 78888899999999999999988874322 12466789999999999999887742 222 4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCc
Q 004829 435 IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPS 514 (728)
Q Consensus 435 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 514 (728)
++..+|..+...|+|++|..+|.++ ..+..+|.++..+|+|++|++.++++.
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~------------ 175 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKAN------------ 175 (449)
T ss_dssp -------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcC------------
Confidence 8999999999999999999999976 247889999999999999999999982
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004829 515 EEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE 594 (728)
Q Consensus 515 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 594 (728)
...+|..++.++...|+++.|..+.... ... +.-+..+..+|.+.|++++|+.++++++.+
T Consensus 176 --~~~~Wk~v~~aCv~~~ef~lA~~~~l~L--------~~~---ad~l~~lv~~Yek~G~~eEai~lLe~aL~l------ 236 (449)
T 1b89_A 176 --STRTWKEVCFACVDGKEFRLAQMCGLHI--------VVH---ADELEELINYYQDRGYFEELITMLEAALGL------ 236 (449)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHTTTTT--------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------
T ss_pred --CchhHHHHHHHHHHcCcHHHHHHHHHHH--------HhC---HhhHHHHHHHHHHCCCHHHHHHHHHHHhCC------
Confidence 2467888899999999999996655431 111 222346888999999999999999999876
Q ss_pred CCcHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcCCCCh-----hHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004829 595 KKSALFGIALNQMGLACVQR--YTINEAADLFEEARTILEKEYGPYHH-----DTLGVYSNLAGTYDAMGRIDDAIEILE 667 (728)
Q Consensus 595 ~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~La~~~~~~g~~~~A~~~~~ 667 (728)
.+....++..||.+|.+- ++..++++.|...+.+ .+ +....|..+..+|...++++.|+..+-
T Consensus 237 --e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini--------~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 237 --ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI--------PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp --TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCH--------HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 222346777788777754 4677777777766665 33 334578899999999999999987655
Q ss_pred HHHH------HHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHH
Q 004829 668 YVVG------MREEKLGTANPDVEDEKRRLAELLKEAGRVRNRK 705 (728)
Q Consensus 668 ~al~------~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~ 705 (728)
+... .+..++ .++...+.++.....|. +....+.
T Consensus 307 ~h~~~a~~~~~f~~~~--~kv~n~elyYkai~fyl--~~~p~~l 346 (449)
T 1b89_A 307 NHPTDAWKEGQFKDII--TKVANVELYYRAIQFYL--EFKPLLL 346 (449)
T ss_dssp HSTTTTCCHHHHHHHH--HHCSSTHHHHHHHHHHH--HHCGGGH
T ss_pred hCChhhhhhHHHHHHH--hchhHHHHHHHHHHHHH--hcCHHHH
Confidence 4321 011110 02344566666666666 3344445
No 90
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.64 E-value=1.4e-14 Score=146.78 Aligned_cols=198 Identities=10% Similarity=-0.049 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829 472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 472 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 551 (728)
......+...+..+...|++++|..++++++...... .........+..+|.++...+++++|+.+|++++.+....
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~ 148 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH---PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCC---hHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc
Confidence 3344555566788899999999999999998853221 0111124455679999999999999999999999965544
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 552 PGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTIL 631 (728)
Q Consensus 552 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 631 (728)
........++.++|.+|..+|++++|+.+|+++++.++.... .....+.+++++|.+|..+|++++|+.++++++++.
T Consensus 149 -~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 149 -IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp -SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334456678999999999999999999999999999887744 456678899999999999999999999999999997
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHH
Q 004829 632 EKEYGPYHHDTLGVYSNLAGTYDAMGR-IDDAIEILEYVVGMREEK 676 (728)
Q Consensus 632 ~~~~~~~~~~~~~~~~~La~~~~~~g~-~~~A~~~~~~al~~~~~~ 676 (728)
..... .+....+++++|.+|..+|+ +++|+.+|++|+.+.+..
T Consensus 227 ~~~~~--~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 227 CRINS--MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHTTB--CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCc--HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 76532 45668899999999999995 699999999999988754
No 91
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.63 E-value=1.5e-14 Score=146.53 Aligned_cols=195 Identities=13% Similarity=0.024 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 004829 395 DRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAV 474 (728)
Q Consensus 395 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 474 (728)
.+...+..+...|++++|+..+.+++...............++.+|.++...|++++|+.+|++++.+.... .+....
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~ 154 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--IDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS--SCTTHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--CchHHH
Confidence 355678889999999999999998876532222223345567789999999999999999999999864432 234456
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004829 475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ 554 (728)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 554 (728)
+.++.++|.+|...|++++|+.+|++++.+.+... ........++.++|.+|..+|++++|+.++++++.+.... +.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~-~~ 231 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI-NS 231 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TB
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-Cc
Confidence 77999999999999999999999999998876532 1222234799999999999999999999999999998764 55
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHhCC
Q 004829 555 QSTIAGIEAQMGVMYYMTGNYSDS-YNTLKSAISKFRTSGE 594 (728)
Q Consensus 555 ~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~ 594 (728)
....+.++.++|.+|..+|++++| ..+|++|+.+++..+.
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~ 272 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 567788999999999999999999 8889999998876654
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.63 E-value=1.2e-15 Score=173.07 Aligned_cols=207 Identities=10% Similarity=-0.032 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCC
Q 004829 434 SIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIP 513 (728)
Q Consensus 434 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 513 (728)
.+++..| ...|++++|+..|++++...-......+|....++..+|.+|...|++++|+..|++++++.
T Consensus 395 ~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------- 463 (681)
T 2pzi_A 395 AASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-------- 463 (681)
T ss_dssp THHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------
T ss_pred chHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--------
Confidence 3444444 77899999999999998211111111278888899999999999999999999999999994
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004829 514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG 593 (728)
Q Consensus 514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 593 (728)
|....+++.+|.+|..+|++++|+..|++++++.+.. ..++.++|.+|..+|++++ +.+|++++++
T Consensus 464 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~----- 529 (681)
T 2pzi_A 464 -GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE-------LAPKLALAATAELAGNTDE-HKFYQTVWST----- 529 (681)
T ss_dssp -CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHH-----
T ss_pred -cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCChHH-HHHHHHHHHh-----
Confidence 3356789999999999999999999999999997765 4678899999999999999 9999999998
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHH
Q 004829 594 EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDA-IEILEYVVGM 672 (728)
Q Consensus 594 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A-~~~~~~al~~ 672 (728)
.+....+++++|.++..+|++++|+..|++++++ +|....+++++|.++...++.++| ...+++++..
T Consensus 530 ---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 598 (681)
T 2pzi_A 530 ---NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARR 598 (681)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHH
T ss_pred ---CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 4445679999999999999999999999999998 899999999999999888876665 6677777766
Q ss_pred HHHH
Q 004829 673 REEK 676 (728)
Q Consensus 673 ~~~~ 676 (728)
....
T Consensus 599 l~~~ 602 (681)
T 2pzi_A 599 VEAL 602 (681)
T ss_dssp HHTS
T ss_pred HhhC
Confidence 5544
No 93
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.63 E-value=1e-14 Score=136.06 Aligned_cols=171 Identities=15% Similarity=0.151 Sum_probs=150.2
Q ss_pred CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
.......+..+|.++...|++++|+.++++++... +....++..+|.++...|++++|+.++++++...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 74 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD---------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT---------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 44567788999999999999999999999987652 223678899999999999999999999999988544
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
. ..++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.+|++++..
T Consensus 75 ~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 75 N-------VKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp C-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence 3 567889999999999999999999999987 2223578899999999999999999999999998
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 631 LEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
.|....++..+|.++...|++++|+.++++++.+.
T Consensus 140 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 140 --------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 66667899999999999999999999999999865
No 94
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.63 E-value=1.6e-14 Score=146.33 Aligned_cols=193 Identities=13% Similarity=0.037 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChh---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829 395 DRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELD---VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH 471 (728)
Q Consensus 395 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 471 (728)
.+...+..+...|++++|+..+++++... ...+. ....+..+|.++...|++++|+.+|++++.+.... .+.
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~--~~~ 151 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE---EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--IDV 151 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC--SCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccc---cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc--ccH
Confidence 34456778889999999999999887532 22222 24456679999999999999999999999853322 234
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829 472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 472 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 551 (728)
...+.++.++|.+|..+|++++|+.+|+++++...... .+.+..+.++.++|.+|..+|++++|+.++++++++.+..
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 45577899999999999999999999999999887642 2567788899999999999999999999999999999877
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCCC
Q 004829 552 PGQQSTIAGIEAQMGVMYYMTGN-YSDSYNTLKSAISKFRTSGEK 595 (728)
Q Consensus 552 ~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~ 595 (728)
+.....+.++..+|.+|..+|+ +++|+.+|++|+.+++..+..
T Consensus 230 -~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~ 273 (293)
T 3u3w_A 230 -NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMH 273 (293)
T ss_dssp -TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCT
T ss_pred -CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 5666778999999999999995 699999999999999887654
No 95
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.63 E-value=8e-15 Score=136.80 Aligned_cols=175 Identities=18% Similarity=0.207 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004829 515 EEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE 594 (728)
Q Consensus 515 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 594 (728)
......+..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------ 71 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD-------VDVALHLGIAYVKTGAVDRGTELLERSLAD------ 71 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence 3457788999999999999999999999887654332 577889999999999999999999999987
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004829 595 KKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMRE 674 (728)
Q Consensus 595 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~ 674 (728)
.+....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 72 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 140 (186)
T 3as5_A 72 --APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR- 140 (186)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred --CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-
Confidence 2233578899999999999999999999999998 67777899999999999999999999999999853
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829 675 EKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK 721 (728)
Q Consensus 675 ~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~ 721 (728)
|....++..+|.++...|++++|. ..++.++...|....
T Consensus 141 -------~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 141 -------PNEGKVHRAIAFSYEQMGRHEEAL-PHFKKANELDEGASV 179 (186)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHCCCG
T ss_pred -------ccchHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCchh
Confidence 556788999999999999999999 999999888877543
No 96
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.7e-13 Score=147.23 Aligned_cols=239 Identities=11% Similarity=0.064 Sum_probs=198.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC-----------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829 396 RRLMGLICDSKGDYEAALEHYVLASMSMAANGHE-----------LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFK 464 (728)
Q Consensus 396 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 464 (728)
....|..+...|++++|++.|.+++.......+. .....++..+|.+|...|++++|++++.+++.+..
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4456778889999999999999988654433221 23345789999999999999999999999999876
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829 465 SAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKA 544 (728)
Q Consensus 465 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 544 (728)
.. .+......+...++.++...|++++|+.++++++.+..... .....+.++..+|.+|...|+|++|+.+++++
T Consensus 87 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 87 QF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK---RVFLKHSLSIKLATLHYQKKQYKDSLALINDL 161 (434)
T ss_dssp TS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS---CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 64 12334456777889999999999999999999999887643 34457889999999999999999999999999
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829 545 LKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLF 624 (728)
Q Consensus 545 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 624 (728)
+...... +.......++..+|.+|...|++++|..++++++.+....... +...+..+..+|.++...+++.+|..+|
T Consensus 162 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 162 LREFKKL-DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP-TQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHTTS-SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHhc-ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9988776 5667788899999999999999999999999999988776543 3446788899999999999999999999
Q ss_pred HHHHHHHHHhcCCCChh
Q 004829 625 EEARTILEKEYGPYHHD 641 (728)
Q Consensus 625 ~~al~~~~~~~~~~~~~ 641 (728)
.+++..+..........
T Consensus 240 ~~a~~~~~~~~~~~~~~ 256 (434)
T 4b4t_Q 240 FESFESYHNLTTHNSYE 256 (434)
T ss_dssp HHHHHHHHHTTTSSCHH
T ss_pred HHHHHHhhhhhhhhhHH
Confidence 99999887765544433
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.61 E-value=3.3e-14 Score=137.87 Aligned_cols=184 Identities=11% Similarity=0.054 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004829 518 ASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS 597 (728)
Q Consensus 518 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 597 (728)
...++.+|..+...|++++|+..|++++...+.. .....+++.+|.+|...|++++|+..|+++++... ..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-----~~ 74 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG----PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-----TH 74 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-----CC
Confidence 4568899999999999999999999999876543 23456788999999999999999999999998732 23
Q ss_pred HHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHhcCCCChhHHH--------------H
Q 004829 598 ALFGIALNQMGLACVQ------------------RYTINEAADLFEEARTILEKEYGPYHHDTLG--------------V 645 (728)
Q Consensus 598 ~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------~ 645 (728)
+....+++.+|.++.. .|++++|+..|+++++. .|+++.... .
T Consensus 75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHHHHHHHHHHHH
Confidence 3345678888888876 57899999999999887 222332222 2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829 646 YSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK 721 (728)
Q Consensus 646 ~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~ 721 (728)
...+|.+|...|++++|+..|+++++.. |.+|....++..+|.+|..+|++++|+ ..++.+....|..+.
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~-~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAE-KVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHH-HHHHHHHhhCCCchh
Confidence 2678999999999999999999999865 566777899999999999999999999 999999988887664
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.61 E-value=1.4e-14 Score=138.62 Aligned_cols=165 Identities=13% Similarity=0.135 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH----------------HHHHHHHcCChHHHHH
Q 004829 433 ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVR----------------LADLYHKIGKLRDSKS 496 (728)
Q Consensus 433 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~ 496 (728)
+..+...|..+...|++++|+.+|++++.+ .|....+++. +|.+|...|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 345678899999999999999999999998 8888888888 9999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCH-
Q 004829 497 YCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNY- 575 (728)
Q Consensus 497 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~- 575 (728)
+|++++++ .|....++..+|.++...|++++|+.+|++++++.+.. ..++..+|.+|+..|+.
T Consensus 76 ~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 76 FYKELLQK---------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-------LAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHhHHH
Confidence 99999999 34457889999999999999999999999999997665 67889999999877643
Q ss_pred -HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 576 -SDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 576 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
..+...+.+++. . .+ ...+++.+|.++...|++++|+.+|++++++
T Consensus 140 ~~~~~~~~~~~~~-------~-~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 140 KKKLETDYKKLSS-------P-TK-MQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHC---C-------C-CH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhC-------C-Cc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344555555432 2 22 2456788899999999999999999999998
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.60 E-value=1.2e-15 Score=137.50 Aligned_cols=147 Identities=12% Similarity=0.102 Sum_probs=124.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q 004829 523 DIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGI 602 (728)
Q Consensus 523 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 602 (728)
.||.++...|++++|+..+++++...++. ...++.+|.+|...|++++|+.+|++++++ .+....
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~-------~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~ 66 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQK-------SIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDPK 66 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHH-------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHH
Confidence 47889999999999999999998765544 456788999999999999999999999998 444578
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHH-HHHHHHHHHHHcCCCC
Q 004829 603 ALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEI-LEYVVGMREEKLGTAN 681 (728)
Q Consensus 603 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~ 681 (728)
++..+|.+|...|++++|+.+|++++++ +|....+++.+|.+|...|++++|... +++++++.
T Consensus 67 a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-------- 130 (150)
T 4ga2_A 67 AHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-------- 130 (150)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--------
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--------
Confidence 9999999999999999999999999999 888888999999999999999887765 58999864
Q ss_pred hHHHHHHHHHHHHHHHhCC
Q 004829 682 PDVEDEKRRLAELLKEAGR 700 (728)
Q Consensus 682 p~~~~~~~~La~~~~~~g~ 700 (728)
|....++..++.++..+|+
T Consensus 131 P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 131 PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 6666778888888888875
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.60 E-value=7.4e-15 Score=166.66 Aligned_cols=201 Identities=12% Similarity=-0.007 Sum_probs=167.0
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 004829 320 AMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLM 399 (728)
Q Consensus 320 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l 399 (728)
...|++++|+..|++++...-...+..+|....++..+|.++...|++++|+..|++++++.+.. ..+++.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--------~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR--------WRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC--------HHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch--------HHHHHHH
Confidence 67899999999999998211111112268888899999999999999999999999999987654 3579999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004829 400 GLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFV 479 (728)
Q Consensus 400 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 479 (728)
|.++...|++++|+..|++++.+ .|....++.++|.++..+|++++ +.+|++++++ +|....+++
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~a~~ 538 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDT------FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVISAAF 538 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHHHHH
Confidence 99999999999999999999987 56667899999999999999999 9999999999 888899999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHhcCC
Q 004829 480 RLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQA-VKLLNKALKIYGKTP 552 (728)
Q Consensus 480 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~ 552 (728)
++|.+|..+|++++|+..|++++++ .|....++.++|.++...++.+++ ...+.+|++......
T Consensus 539 ~lg~~~~~~g~~~~A~~~~~~al~l---------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 539 GLARARSAEGDRVGAVRTLDEVPPT---------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCTT---------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHcCCHHHHHHHHHhhccc---------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 9999999999999999999999887 456788999999999887776666 677777777776654
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.60 E-value=5.3e-14 Score=134.51 Aligned_cols=166 Identities=10% Similarity=-0.006 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHH----------------HHHHHHHcCCHHHHH
Q 004829 475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLID----------------IAAIYQSMNELEQAV 538 (728)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~ 538 (728)
+..++..|..+...|++++|+.+|++++.+ .|....++.. +|.+|...|++++|+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 74 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL---------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAY 74 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHH
Confidence 456778899999999999999999999998 5777788888 999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCC--
Q 004829 539 KLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYT-- 616 (728)
Q Consensus 539 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-- 616 (728)
..|++++++.+.. ..++..+|.+|...|++++|+.+|++++++ .|....+++.+|.+|...|+
T Consensus 75 ~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 75 LFYKELLQKAPNN-------VDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHH
Confidence 9999999997665 678899999999999999999999999998 44456899999999987764
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 617 INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 617 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
...+...|.+++.. .| ...+++.+|.++...|++++|+.+|++++++.
T Consensus 140 ~~~~~~~~~~~~~~--------~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 140 KKKLETDYKKLSSP--------TK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHC---CC--------CH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHhCC--------Cc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 44556666655432 33 23467889999999999999999999999853
No 102
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=1.4e-11 Score=137.26 Aligned_cols=441 Identities=7% Similarity=-0.041 Sum_probs=285.1
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC---hhHHHHHHH
Q 004829 214 AGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQ---YNEAIPVLE 290 (728)
Q Consensus 214 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~ 290 (728)
....+|.....+...+......+ +++.+...|++++..+ |.....|...+......|+ ++.+..+|+
T Consensus 58 ~l~~np~d~~~W~~yi~~~~~~~-~~~~aR~vyEraL~~f---------P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 58 MIEEQPTDIFLYVKLLKHHVSLK-QWKQVYETFDKLHDRF---------PLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHCcCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 44557888888999999888886 8999999999999985 4445557677777888888 999999999
Q ss_pred HhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCH----HHHH----HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-
Q 004829 291 RSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQI----ENSI----LCYTAGLEIQRQVLGETDHRVGETCRYVAEAH- 361 (728)
Q Consensus 291 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~A~----~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~- 361 (728)
+++.... .+... .+|..........++. +++. ..|++|+.. +|.-++....+|.......
T Consensus 128 Ral~~~~---~~~sv----~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~----vG~~d~~s~~iW~~Yi~f~~ 196 (679)
T 4e6h_A 128 RCLSKEL---GNNDL----SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK----CAIFEPKSIQFWNEYLHFLE 196 (679)
T ss_dssp HHTCSSS---CCCCH----HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH----TTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHhcC---CCCCH----HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH----hCcccccchHHHHHHHHHHH
Confidence 9997641 01221 2344444444444443 3444 566666554 4431222233443333322
Q ss_pred --------HHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH----------HHHHcCCHHHHHHHHHHHHHHH
Q 004829 362 --------VQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGL----------ICDSKGDYEAALEHYVLASMSM 423 (728)
Q Consensus 362 --------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~----------~~~~~g~~~~A~~~~~~al~~~ 423 (728)
..+++++.+..+|++++.+ +..........|...-. +-....+|..|...+.......
T Consensus 197 ~~~~~~~~eeq~~~~~~R~iy~raL~i----P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~ 272 (679)
T 4e6h_A 197 HWKPVNKFEEQQRVQYIRKLYKTLLCQ----PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNIT 272 (679)
T ss_dssp TCCCCSHHHHHHHHHHHHHHHHHHTTS----CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccccCcHHHHhHHHHHHHHHHHHHhC----ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 2344577888888888742 11111111111111110 0111123344444443322211
Q ss_pred HhcCC--------------------ChhHHHHHHHHHHHHHHhCC---------HHHHHHHHHHHHHHHHHhcCCCCHHH
Q 004829 424 AANGH--------------------ELDVASIDCSIGDAYLSLAR---------FDEAIFSYHKALTAFKSAKGENHPAV 474 (728)
Q Consensus 424 ~~~~~--------------------~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~~~~~~~~~~~~ 474 (728)
..... .......|..... +...+ .......|++++.. .|..
T Consensus 273 ~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~--fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--------~p~~ 342 (679)
T 4e6h_A 273 KGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIR--WESDNKLELSDDLHKARMTYVYMQAAQH--------VCFA 342 (679)
T ss_dssp TTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHH--HHHTCTTCCCHHHHHHHHHHHHHHHHHH--------TTTC
T ss_pred HhHhhccccccccchhccCCCCchhHHHHHHHHHHHHH--HHHhCCccccchhhHHHHHHHHHHHHHH--------cCCC
Confidence 11110 0122233333333 33322 23456788999887 7778
Q ss_pred HHHHHHHHHHHHHcCChHHHH-HHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc---
Q 004829 475 ASVFVRLADLYHKIGKLRDSK-SYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK--- 550 (728)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--- 550 (728)
...++..+..+...|+.++|. ..|++|+... |.....+..++.+....|+++.|...|++++.....
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~---------P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~ 413 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCI---------PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLA 413 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999997 9999999874 223566888899999999999999999999986521
Q ss_pred -----CCCC-------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC-CH
Q 004829 551 -----TPGQ-------QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY-TI 617 (728)
Q Consensus 551 -----~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~ 617 (728)
.+.. ......++...+.+..+.|+.+.|...|.+|++... .. ...++...|.+....+ ++
T Consensus 414 ~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~---~~----~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 414 ALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK---LV----TPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG---GS----CTHHHHHHHHHHHTTTSCC
T ss_pred hhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CC----ChHHHHHHHHHHHHhCCCH
Confidence 1110 002345677778888889999999999999986511 11 1234555666666655 59
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 004829 618 NEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE 697 (728)
Q Consensus 618 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~ 697 (728)
+.|..+|+.+++. .|.....+...+......|+.+.|..+|++++... +........+......-..
T Consensus 487 e~Ar~ife~~Lk~--------~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~-----~~~~~~~~lw~~~~~fE~~ 553 (679)
T 4e6h_A 487 KTACKVLELGLKY--------FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI-----SDSHLLKMIFQKVIFFESK 553 (679)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS-----SSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHH
Confidence 9999999999998 44444566677778888999999999999999742 1112566778888888899
Q ss_pred hCChhHHHHHHHHHHHhhcccc
Q 004829 698 AGRVRNRKSRSLVTFLDSNSQN 719 (728)
Q Consensus 698 ~g~~~~A~~~~l~~ll~~~~~~ 719 (728)
.|+.+.+. ...+.+.+..|+.
T Consensus 554 ~G~~~~~~-~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 554 VGSLNSVR-TLEKRFFEKFPEV 574 (679)
T ss_dssp TCCSHHHH-HHHHHHHHHSTTC
T ss_pred cCCHHHHH-HHHHHHHHhCCCC
Confidence 99999998 9999998888864
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.59 E-value=2.6e-15 Score=135.31 Aligned_cols=147 Identities=11% Similarity=0.133 Sum_probs=127.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHH
Q 004829 480 RLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIA 559 (728)
Q Consensus 480 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 559 (728)
.||.++...|++++|+..+++++.. .|.....++.+|.+|...|++++|+.+|++++++.+.. .
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~---------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-------~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS---------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-------P 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS---------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Confidence 4788899999999999999998765 67788889999999999999999999999999997765 6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHHHHhcCCC
Q 004829 560 GIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADL-FEEARTILEKEYGPY 638 (728)
Q Consensus 560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~ 638 (728)
.++..+|.+|...|++++|+.+|++++++ .+....++..+|.+|...|++++|... +++++++
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-------- 129 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-------- 129 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------
Confidence 78999999999999999999999999998 444568999999999999999887765 5999999
Q ss_pred ChhHHHHHHHHHHHHHHcCC
Q 004829 639 HHDTLGVYSNLAGTYDAMGR 658 (728)
Q Consensus 639 ~~~~~~~~~~La~~~~~~g~ 658 (728)
+|....++..++.++...|+
T Consensus 130 ~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 130 FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp STTCHHHHHHHHHHHHTCCC
T ss_pred CcCCHHHHHHHHHHHHHhCc
Confidence 88888889999999988886
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.58 E-value=4.5e-13 Score=129.81 Aligned_cols=191 Identities=10% Similarity=0.034 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCC
Q 004829 433 ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGI 512 (728)
Q Consensus 433 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 512 (728)
+..++.+|..++..|++++|+..|++++... ++.+....+++.+|.+|...|++++|+..|+++++....
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~----- 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT----- 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-----
Confidence 3456777888888888888888888887761 123344567788888888888888888888888877433
Q ss_pred CcHHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCC
Q 004829 513 PSEEIASGLIDIAAIYQS------------------MNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGN 574 (728)
Q Consensus 513 ~~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 574 (728)
.+....+++.+|.++.. .|++++|+..|+++++..++... ...++..++.+.
T Consensus 74 -~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~----a~~a~~~l~~~~----- 143 (225)
T 2yhc_A 74 -HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY----TTDATKRLVFLK----- 143 (225)
T ss_dssp -CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT----HHHHHHHHHHHH-----
T ss_pred -CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh----HHHHHHHHHHHH-----
Confidence 33345567777777765 56777777777777766554421 111111111111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004829 575 YSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYD 654 (728)
Q Consensus 575 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~ 654 (728)
.........+|.+|...|++++|+..|+++++. .|+++....+++.+|.+|.
T Consensus 144 -----------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~l~~~~~ 195 (225)
T 2yhc_A 144 -----------------------DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD-----YPDTQATRDALPLMENAYR 195 (225)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTSHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-----CcCCCccHHHHHHHHHHHH
Confidence 011234467899999999999999999999998 2345556689999999999
Q ss_pred HcCChHHHHHHHHHHHH
Q 004829 655 AMGRIDDAIEILEYVVG 671 (728)
Q Consensus 655 ~~g~~~~A~~~~~~al~ 671 (728)
.+|++++|+..++++..
T Consensus 196 ~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 196 QMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHh
Confidence 99999999999997776
No 105
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.57 E-value=1.1e-13 Score=148.47 Aligned_cols=153 Identities=13% Similarity=0.081 Sum_probs=142.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHH
Q 004829 521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS-TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSAL 599 (728)
Q Consensus 521 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 599 (728)
....+..+..+|+|++|+.++++++++.....+..+ .++.++.+||.+|..+|+|++|+.++++++++.+...+..++.
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 344555677899999999999999999999888765 7888999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 600 FGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 600 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
.+..+++||.+|..+|++++|+.+|++|+++.+..+|++||.+...+..|+.++..++.+++|...|.++.+..
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986543
No 106
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.57 E-value=3.3e-13 Score=122.63 Aligned_cols=158 Identities=18% Similarity=0.172 Sum_probs=142.1
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 004829 347 DHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAAN 426 (728)
Q Consensus 347 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 426 (728)
.+..+.++..+|.++...|++++|+.++++++.+.+.... ....+.++..+|.++...|++++|+.++++++.+....
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 3566789999999999999999999999999999988654 34556789999999999999999999999999999888
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc
Q 004829 427 GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYG 506 (728)
Q Consensus 427 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 506 (728)
++.+....++..+|.++...|++++|+.++++++.+.... .+.+....++..+|.++...|++++|+.++++++++.+
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999999998776 34567788999999999999999999999999999976
Q ss_pred CC
Q 004829 507 KP 508 (728)
Q Consensus 507 ~~ 508 (728)
+.
T Consensus 161 ~~ 162 (164)
T 3ro3_A 161 EV 162 (164)
T ss_dssp TC
T ss_pred Hh
Confidence 53
No 107
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.56 E-value=3.9e-13 Score=122.09 Aligned_cols=157 Identities=16% Similarity=0.187 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 004829 390 IEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGE 469 (728)
Q Consensus 390 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 469 (728)
...+.++..+|.++...|++++|+.++.+++.+....++....+.++..+|.++...|++++|+.++++++.+.... .
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~ 83 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--K 83 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--C
Confidence 34567899999999999999999999999999988888888888999999999999999999999999999998776 3
Q ss_pred CCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004829 470 NHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYG 549 (728)
Q Consensus 470 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 549 (728)
+.+....++..+|.++...|++++|+.++++++.+..... +.+....++..+|.++...|++++|+.++++++++..
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK---DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc---chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 4566688999999999999999999999999999987643 4567788999999999999999999999999999876
Q ss_pred cC
Q 004829 550 KT 551 (728)
Q Consensus 550 ~~ 551 (728)
..
T Consensus 161 ~~ 162 (164)
T 3ro3_A 161 EV 162 (164)
T ss_dssp TC
T ss_pred Hh
Confidence 54
No 108
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.50 E-value=5.6e-13 Score=140.57 Aligned_cols=122 Identities=13% Similarity=0.123 Sum_probs=117.2
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004829 571 MTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLA 650 (728)
Q Consensus 571 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La 650 (728)
..|+|++|+.++++++++.....+..++..+.++.+||.+|..+|+|++|+.++++++.+.++.+|++||+++..+.+||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46899999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 004829 651 GTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLA 692 (728)
Q Consensus 651 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La 692 (728)
.+|..+|++++|+.+|++|+++.+..+|++||.+.++..+|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999998887764
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.50 E-value=4e-13 Score=116.67 Aligned_cols=117 Identities=12% Similarity=0.086 Sum_probs=107.1
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004829 514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG 593 (728)
Q Consensus 514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 593 (728)
+|..+..+.++|..|+..|+|++|+.+|++++++.+.. ..++.++|.+|..+|++++|+..|++++++
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----- 76 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN-------AILYSNRAACLTKLMEFQRALDDCDTCIRL----- 76 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----
Confidence 68899999999999999999999999999999987655 678899999999999999999999999998
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004829 594 EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTY 653 (728)
Q Consensus 594 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~ 653 (728)
.+....++..+|.++..+|++++|+..|++++++ +|+...++..|+.++
T Consensus 77 ---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 ---DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNCL 125 (126)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHC
T ss_pred ---hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHhc
Confidence 4445689999999999999999999999999999 888888888888764
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.49 E-value=1.2e-12 Score=131.12 Aligned_cols=229 Identities=10% Similarity=0.038 Sum_probs=193.8
Q ss_pred HHhCC-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHcCCCCCCCcHHHHHH
Q 004829 444 LSLAR-FDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIG--KLRDSKSYCENALKIYGKPNHGIPSEEIASG 520 (728)
Q Consensus 444 ~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 520 (728)
...|. .++|+..+.++|.+ +|....+++..+.++..+| ++++++.++..++... |....+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n---------Pk~y~a 105 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN---------EKNYQI 105 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC---------TTCCHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC---------cccHHH
Confidence 34444 47999999999999 9999999999999999999 9999999999999983 445577
Q ss_pred HHHHHHHH----HHc---CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHH
Q 004829 521 LIDIAAIY----QSM---NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYS--DSYNTLKSAISKFRT 591 (728)
Q Consensus 521 ~~~la~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~ 591 (728)
|+..+.++ ... +++++++.++.++++..++. ..++...+.++...|.++ +++.++.++++.
T Consensus 106 W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn-------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--- 175 (306)
T 3dra_A 106 WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN-------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--- 175 (306)
T ss_dssp HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---
Confidence 88888888 666 78999999999999987776 678889999999999999 999999999987
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH-HHH
Q 004829 592 SGEKKSALFGIALNQMGLACVQRYT------INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDD-AIE 664 (728)
Q Consensus 592 ~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~-A~~ 664 (728)
++....++...+.++...+. ++++++++.+++.+ +|....+++.++.++...|+... ...
T Consensus 176 -----d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~ 242 (306)
T 3dra_A 176 -----DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEE 242 (306)
T ss_dssp -----CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHH
T ss_pred -----CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHH
Confidence 44456789999999998887 99999999999999 89999999999999999998655 444
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHh-hccc
Q 004829 665 ILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLD-SNSQ 718 (728)
Q Consensus 665 ~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~-~~~~ 718 (728)
++.+++.+. ..+|....++..|+.+|.+.|+.++|+ +.++.+.+ .+|-
T Consensus 243 ~~~~~~~~~-----~~~~~s~~al~~la~~~~~~~~~~~A~-~~~~~l~~~~Dpi 291 (306)
T 3dra_A 243 FSLQFVDLE-----KDQVTSSFALETLAKIYTQQKKYNESR-TVYDLLKSKYNPI 291 (306)
T ss_dssp HHHTTEEGG-----GTEESCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTTCGG
T ss_pred HHHHHHhcc-----CCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHhccChH
Confidence 666665421 124666778999999999999999999 99999886 4664
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.49 E-value=4.5e-12 Score=127.03 Aligned_cols=237 Identities=7% Similarity=-0.058 Sum_probs=196.6
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 004829 364 SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKG--DYEAALEHYVLASMSMAANGHELDVASIDCSIGD 441 (728)
Q Consensus 364 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 441 (728)
....++|+.++.+++.+.|.. ..+++..+.++...| ++++++..+..++.. .|....+|+..+.
T Consensus 46 ~e~s~~aL~~t~~~L~~nP~~--------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~------nPk~y~aW~~R~~ 111 (306)
T 3dra_A 46 EEYSERALHITELGINELASH--------YTIWIYRFNILKNLPNRNLYDELDWCEEIALD------NEKNYQIWNYRQL 111 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH------CTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCcHH--------HHHHHHHHHHHHHcccccHHHHHHHHHHHHHH------CcccHHHHHHHHH
Confidence 344478999999999988765 346899999999999 999999999999876 5777788999998
Q ss_pred HH----HHh---CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHHcCCCCCC
Q 004829 442 AY----LSL---ARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLR--DSKSYCENALKIYGKPNHGI 512 (728)
Q Consensus 442 ~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~~~~~ 512 (728)
++ ... +++++++.++.++++. +|....++...+.++...|.++ +++.++.++++.
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-------- 175 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-------- 175 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--------
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--------
Confidence 88 667 7999999999999998 9999999999999999999999 999999999998
Q ss_pred CcHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHH-HHHHHHHH
Q 004829 513 PSEEIASGLIDIAAIYQSMNE------LEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSD-SYNTLKSA 585 (728)
Q Consensus 513 ~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a 585 (728)
++....+|...+.++...+. ++++++++.+++.+.+.. ..+++.++.++...|+... ...++.++
T Consensus 176 -d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n-------~SaW~y~~~ll~~~~~~~~~~~~~~~~~ 247 (306)
T 3dra_A 176 -DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN-------PSTWNYLLGIHERFDRSITQLEEFSLQF 247 (306)
T ss_dssp -CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC-------HHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred -CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC-------ccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 44567789999999999887 999999999999987766 5688889999999998655 44455555
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhcCCCChhHHHHHHHHHH
Q 004829 586 ISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEART-ILEKEYGPYHHDTLGVYSNLAG 651 (728)
Q Consensus 586 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~La~ 651 (728)
+.+- . ..+....++..++.+|.+.|+.++|+++|+.+.+ + +|.....+...+.
T Consensus 248 ~~~~----~-~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~--------Dpir~~yW~~~~~ 301 (306)
T 3dra_A 248 VDLE----K-DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY--------NPIRSNFWDYQIS 301 (306)
T ss_dssp EEGG----G-TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------CGGGHHHHHHHHH
T ss_pred Hhcc----C-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc--------ChHHHHHHHHHHh
Confidence 5431 0 0122356899999999999999999999999886 5 7777777666554
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.49 E-value=2.4e-13 Score=118.06 Aligned_cols=117 Identities=16% Similarity=0.225 Sum_probs=105.6
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829 555 QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKE 634 (728)
Q Consensus 555 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 634 (728)
.+..+..+.++|..|+..|+|++|+.+|++++++ .+....++.++|.+|..+|++++|+..|++++++
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---- 76 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL---- 76 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----
Confidence 4566788899999999999999999999999988 4445689999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 004829 635 YGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELL 695 (728)
Q Consensus 635 ~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~ 695 (728)
+|....+++.+|.+|..+|++++|+..|++++++ +|+...++..|+.++
T Consensus 77 ----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 ----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNCL 125 (126)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHC
T ss_pred ----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHhc
Confidence 8888899999999999999999999999999996 377777888887764
No 113
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.48 E-value=6.1e-13 Score=140.72 Aligned_cols=131 Identities=12% Similarity=-0.046 Sum_probs=124.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004829 568 MYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYS 647 (728)
Q Consensus 568 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 647 (728)
-+..+|+|++|+..+++++++.....+..++..+.++.++|.+|..+|+|++|+.++++++.+.+..+|++||.++..++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 35578999999999999999988887888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHh
Q 004829 648 NLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEA 698 (728)
Q Consensus 648 ~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~ 698 (728)
+||.+|..+|++++|+.+|++|+++.+..+|++||.+..++.+|+.+...+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988654
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.46 E-value=9e-13 Score=132.79 Aligned_cols=170 Identities=12% Similarity=0.008 Sum_probs=148.3
Q ss_pred CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
.|.....+..+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++...+.
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~ 183 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQL---------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD 183 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence 3556778899999999999999999999999999 3445678999999999999999999999998765432
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
........+..+...++.++|+..|++++.. .+....+++.+|.++...|++++|+..|++++..
T Consensus 184 -------~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 184 -------TRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp -------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 2344556677788899999999999999988 4445689999999999999999999999999999
Q ss_pred HHHhcCCCChhH--HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 631 LEKEYGPYHHDT--LGVYSNLAGTYDAMGRIDDAIEILEYVVGM 672 (728)
Q Consensus 631 ~~~~~~~~~~~~--~~~~~~La~~~~~~g~~~~A~~~~~~al~~ 672 (728)
+|.. ..++..|+.++..+|+.++|...|++++..
T Consensus 249 --------~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 249 --------DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp --------CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred --------ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 7776 779999999999999999999999999874
No 115
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.46 E-value=2.1e-13 Score=126.57 Aligned_cols=165 Identities=10% Similarity=0.008 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004829 475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ 554 (728)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 554 (728)
...++.+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++...+ .
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~--- 72 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDE---------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D--- 72 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHH---------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C---
Confidence 445788999999999999999999999998 466788999999999999999999999999876654 2
Q ss_pred CCcHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 555 QSTIAGIEAQMGVMY-YMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK 633 (728)
Q Consensus 555 ~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 633 (728)
......++.+. ...+...+|+..++++++. .+....+++.+|.++...|++++|+..|+++++.
T Consensus 73 ----~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--- 137 (176)
T 2r5s_A 73 ----NSYKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV--- 137 (176)
T ss_dssp ----HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---
T ss_pred ----hHHHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---
Confidence 12233334332 2334455689999999987 3445688999999999999999999999999988
Q ss_pred hcCCCChhH--HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 634 EYGPYHHDT--LGVYSNLAGTYDAMGRIDDAIEILEYVVGM 672 (728)
Q Consensus 634 ~~~~~~~~~--~~~~~~La~~~~~~g~~~~A~~~~~~al~~ 672 (728)
+|.. ..++..+|.++..+|+.++|+..|++++..
T Consensus 138 -----~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 138 -----NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp -----CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred -----CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 6654 458999999999999999999999999863
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.45 E-value=7.1e-13 Score=122.91 Aligned_cols=168 Identities=14% Similarity=0.007 Sum_probs=134.9
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhh
Q 004829 220 ALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLE 299 (728)
Q Consensus 220 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 299 (728)
.....++.+|..++..| ++++|+..|++++... |....++..+|.++...|++++|+..|++++...
T Consensus 4 ~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~---------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--- 70 (176)
T 2r5s_A 4 SPDEQLLKQVSELLQQG-EHAQALNVIQTLSDEL---------QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--- 70 (176)
T ss_dssp --CTTHHHHHHHHHHTT-CHHHHHHHHHTSCHHH---------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---
T ss_pred CHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHC---------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---
Confidence 33456889999999997 9999999999999864 5567789999999999999999999999998764
Q ss_pred cCCchhHhHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004829 300 DGQDHALAKFAGCMQLGDTY-AMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMAL 378 (728)
Q Consensus 300 ~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 378 (728)
+ .+.. +..++.+. ...+...+|+..|++++.. +|....+++.+|.++...|++++|+..|++++
T Consensus 71 --p-~~~~----~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 135 (176)
T 2r5s_A 71 --Q-DNSY----KSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNIL 135 (176)
T ss_dssp --C-CHHH----HHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --C-ChHH----HHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 2221 23333332 2333445689999999998 78888999999999999999999999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 379 DIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASM 421 (728)
Q Consensus 379 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 421 (728)
.+.|.... ..++..+|.++...|++++|+..|++++.
T Consensus 136 ~~~p~~~~------~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 136 KVNLGAQD------GEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TTCTTTTT------THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HhCcccCh------HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 87654322 13588899999999999999999998874
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.44 E-value=8e-13 Score=129.14 Aligned_cols=210 Identities=11% Similarity=-0.033 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 476 SVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDI-------AAIYQSMNELEQAVKLLNKALKIY 548 (728)
Q Consensus 476 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~ 548 (728)
..++..|.-+ ..+++..|...|.+++.+ .|..+.+|..+ +.++...++..+++..+++++.+.
T Consensus 8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~---------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~ 77 (282)
T 4f3v_A 8 ASLFESAVSM-LPMSEARSLDLFTEITNY---------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQIS 77 (282)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCC
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHh---------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445556665 589999999999999999 56688999999 899999999999999999999876
Q ss_pred hcCCCCCCc--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc
Q 004829 549 GKTPGQQST--------------IAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR 614 (728)
Q Consensus 549 ~~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 614 (728)
+........ ...+...++.++...|+|++|.+.|...+.. .+... ..+.+|.++++.
T Consensus 78 p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~~ 148 (282)
T 4f3v_A 78 MSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYGAA 148 (282)
T ss_dssp GGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHHHT
T ss_pred hhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHHHc
Confidence 655333222 2455667899999999999999998877642 23334 889999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHH
Q 004829 615 YTINEAADLFEEARTILEKEYGPYHHDT-LGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPD-VEDEKRRLA 692 (728)
Q Consensus 615 g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~La 692 (728)
+++++|+.+|+++... .+|.. ..+++.||.++..+|++++|+.+|++++. ++..|. ..++.+.+|
T Consensus 149 ~r~~dA~~~l~~a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~g 215 (282)
T 4f3v_A 149 ERWTDVIDQVKSAGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLA 215 (282)
T ss_dssp TCHHHHHHHHTTGGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHH
Confidence 9999999999876553 13332 45899999999999999999999999974 333265 778999999
Q ss_pred HHHHHhCChhHHHHHHHHHHHhhccc
Q 004829 693 ELLKEAGRVRNRKSRSLVTFLDSNSQ 718 (728)
Q Consensus 693 ~~~~~~g~~~~A~~~~l~~ll~~~~~ 718 (728)
.++..+|+.++|. ..++.++..+|.
T Consensus 216 laL~~lGr~deA~-~~l~~a~a~~P~ 240 (282)
T 4f3v_A 216 MARRSQGNESAAV-ALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHTCHHHHH-HHHHHHHHHSCC
T ss_pred HHHHHcCCHHHHH-HHHHHHHhcCCc
Confidence 9999999999999 999999999886
No 118
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.44 E-value=3.2e-12 Score=122.45 Aligned_cols=177 Identities=16% Similarity=0.087 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHH
Q 004829 450 DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQ 529 (728)
Q Consensus 450 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~ 529 (728)
.+|+.+|+++.+. ..+.+++.||.+|...+++++|+.+|+++++.- .+.+++.||.+|.
T Consensus 3 ~eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-----------~~~a~~~lg~~y~ 61 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-----------DGDALALLAQLKI 61 (212)
T ss_dssp -CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHH
Confidence 3577788888764 235779999999999999999999999998751 3578899999999
Q ss_pred HcC----CHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCCCcHHHH
Q 004829 530 SMN----ELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYM----TGNYSDSYNTLKSAISKFRTSGEKKSALFG 601 (728)
Q Consensus 530 ~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 601 (728)
. + ++++|+.+|+++.+. + ...++++||.+|.. .+++++|+.+|+++++. ......+
T Consensus 62 ~-~g~~~~~~~A~~~~~~A~~~-----g----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~~~ 125 (212)
T 3rjv_A 62 R-NPQQADYPQARQLAEKAVEA-----G----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD------SESDAAV 125 (212)
T ss_dssp S-STTSCCHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS------TTSHHHH
T ss_pred c-CCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc------CCCcchH
Confidence 8 7 999999999999653 1 15678899999988 89999999999999864 1111346
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHH
Q 004829 602 IALNQMGLACVQ----RYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM-G-----RIDDAIEILEYVVG 671 (728)
Q Consensus 602 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~-g-----~~~~A~~~~~~al~ 671 (728)
.+++.||.+|.. .+++++|+.+|+++++. +.+ ..++++||.+|... | ++++|+.+|+++++
T Consensus 126 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~---~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 126 DAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL------SRT---GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT------SCT---THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc------CCC---HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 899999999999 88999999999999875 112 33789999999864 3 89999999999998
Q ss_pred H
Q 004829 672 M 672 (728)
Q Consensus 672 ~ 672 (728)
.
T Consensus 197 ~ 197 (212)
T 3rjv_A 197 E 197 (212)
T ss_dssp H
T ss_pred c
Confidence 4
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.43 E-value=1.1e-12 Score=132.05 Aligned_cols=165 Identities=12% Similarity=0.059 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004829 517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK 596 (728)
Q Consensus 517 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 596 (728)
....+..+|..+...|++++|+..|++++...+.. ..++..+|.++..+|++++|+..+++++..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-------- 180 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN-------GEIGLLLAETLIALNRSEDAEAVLXTIPLQ-------- 180 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--------
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHhCchh--------
Confidence 45678899999999999999999999999997766 578899999999999999999999998765
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004829 597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK 676 (728)
Q Consensus 597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~ 676 (728)
.+.........+..+...++.++|+..|++++.. +|+...+++.||.+|...|++++|+..|++++..
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---- 248 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRX---- 248 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----
Confidence 1223455666777788889999999999999999 8888999999999999999999999999999995
Q ss_pred cCCCChHH--HHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 004829 677 LGTANPDV--EDEKRRLAELLKEAGRVRNRKSRSLVTFL 713 (728)
Q Consensus 677 ~~~~~p~~--~~~~~~La~~~~~~g~~~~A~~~~l~~ll 713 (728)
+|.. ..++..|+.++..+|+.++|. ..++..+
T Consensus 249 ----~p~~~~~~a~~~l~~~~~~~g~~~~a~-~~~r~al 282 (287)
T 3qou_A 249 ----DLTAADGQTRXTFQEILAALGTGDALA-SXYRRQL 282 (287)
T ss_dssp ----CTTGGGGHHHHHHHHHHHHHCTTCHHH-HHHHHHH
T ss_pred ----ccccccchHHHHHHHHHHHcCCCCcHH-HHHHHHH
Confidence 3555 789999999999999999999 5555544
No 120
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.42 E-value=5.5e-12 Score=120.75 Aligned_cols=177 Identities=14% Similarity=0.009 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHH
Q 004829 240 QKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTY 319 (728)
Q Consensus 240 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 319 (728)
.+|+.+|+++... ..+.+++.+|.+|...+++++|+.+|+++++.. + ..+++.||.+|
T Consensus 3 ~eA~~~~~~aa~~-----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-------~----~~a~~~lg~~y 60 (212)
T 3rjv_A 3 TEPGSQYQQQAEA-----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-------D----GDALALLAQLK 60 (212)
T ss_dssp -CTTHHHHHHHHT-----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-------C----HHHHHHHHHHT
T ss_pred chHHHHHHHHHHC-----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-------C----HHHHHHHHHHH
Confidence 4678888888763 236678999999999999999999999998642 2 23589999999
Q ss_pred HHhC----CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829 320 AMLG----QIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ----SLQFDEAEKICQMALDIHRENTSPASIE 391 (728)
Q Consensus 320 ~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~ 391 (728)
.. + ++++|+.+|+++.+. ....+++.||.+|.. .+++++|+.+|+++.+..+. ..
T Consensus 61 ~~-~g~~~~~~~A~~~~~~A~~~----------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~------~~ 123 (212)
T 3rjv_A 61 IR-NPQQADYPQARQLAEKAVEA----------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES------DA 123 (212)
T ss_dssp TS-STTSCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS------HH
T ss_pred Hc-CCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC------cc
Confidence 98 7 999999999999643 456789999999988 88999999999999864321 12
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHh-C-----CHHHHHHHHHHHHH
Q 004829 392 EAADRRLMGLICDS----KGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSL-A-----RFDEAIFSYHKALT 461 (728)
Q Consensus 392 ~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~ 461 (728)
.+.+++.||.+|.. .+++++|+.+|++++.. +....++++||.+|... | ++++|+.+|+++++
T Consensus 124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 24579999999999 88999999999999754 12234789999999875 3 89999999999998
Q ss_pred H
Q 004829 462 A 462 (728)
Q Consensus 462 ~ 462 (728)
.
T Consensus 197 ~ 197 (212)
T 3rjv_A 197 E 197 (212)
T ss_dssp H
T ss_pred c
Confidence 7
No 121
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.41 E-value=1.5e-12 Score=145.20 Aligned_cols=165 Identities=12% Similarity=0.060 Sum_probs=127.4
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHH
Q 004829 446 LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIA 525 (728)
Q Consensus 446 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la 525 (728)
.|++++|+..|+++++. .|....++..+|.++...|++++|+.+|++++++ .+....++..+|
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~lg 64 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---------HPGHPEAVARLG 64 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---------STTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHH
Confidence 47899999999999988 7777889999999999999999999999999987 334567899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 004829 526 AIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALN 605 (728)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 605 (728)
.+|..+|++++|+.+|++++++.+.. ..++..+|.+|...|++++|+.+|++++++ .+....++.
T Consensus 65 ~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~ 129 (568)
T 2vsy_A 65 RVRWTQQRHAEAAVLLQQASDAAPEH-------PGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITA 129 (568)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHH
Confidence 99999999999999999999986554 578899999999999999999999999988 333457899
Q ss_pred HHHHHHHHc---CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004829 606 QMGLACVQR---YTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLA 650 (728)
Q Consensus 606 ~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La 650 (728)
.+|.++... |++++|+..|+++++. +|.....+..++
T Consensus 130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 169 (568)
T 2vsy_A 130 QLLNWRRRLCDWRALDVLSAQVRAAVAQ--------GVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHH--------TCCCSCHHHHTT
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhc--------CCcccChHHHhC
Confidence 999999999 9999999999999998 555444555555
No 122
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.41 E-value=1.5e-12 Score=145.23 Aligned_cols=159 Identities=10% Similarity=0.041 Sum_probs=126.6
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 004829 531 MNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLA 610 (728)
Q Consensus 531 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 610 (728)
.|++++|+.+|+++++..+.. ..++..+|.+|...|++++|+.+|++++++ .+....++..+|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~ 66 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD-------FVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGRV 66 (568)
T ss_dssp -------------------CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 478999999999999886654 578899999999999999999999999986 33346789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 004829 611 CVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRR 690 (728)
Q Consensus 611 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~ 690 (728)
|..+|++++|+.+|++++++ +|....++.++|.+|..+|++++|+.+|++++++ +|....++..
T Consensus 67 ~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~ 130 (568)
T 2vsy_A 67 RWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITAQ 130 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Confidence 99999999999999999998 7888889999999999999999999999999985 3667789999
Q ss_pred HHHHHHHh---CChhHHHHHHHHHHHhhcccccc
Q 004829 691 LAELLKEA---GRVRNRKSRSLVTFLDSNSQNLK 721 (728)
Q Consensus 691 La~~~~~~---g~~~~A~~~~l~~ll~~~~~~~~ 721 (728)
++.++..+ |++++|. ..++.+++.+|....
T Consensus 131 l~~~~~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 163 (568)
T 2vsy_A 131 LLNWRRRLCDWRALDVLS-AQVRAAVAQGVGAVE 163 (568)
T ss_dssp HHHHHHHTTCCTTHHHHH-HHHHHHHHHTCCCSC
T ss_pred HHHHHHHhhccccHHHHH-HHHHHHHhcCCcccC
Confidence 99999999 9999999 999999999887643
No 123
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.40 E-value=1.9e-11 Score=119.36 Aligned_cols=220 Identities=13% Similarity=0.001 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-------HHHHHHcCChhHHHHHHHHhhhh
Q 004829 223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVL-------AAIHCSLGQYNEAIPVLERSVEI 295 (728)
Q Consensus 223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~ 295 (728)
..++..|.-+ ..+ ++.+|...|.+++.+ +|..+.+|..+ +.++...+++.+++..+++++.+
T Consensus 8 ~~~~~~~~~~-~~~-d~~~A~~~F~~a~~~---------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l 76 (282)
T 4f3v_A 8 ASLFESAVSM-LPM-SEARSLDLFTEITNY---------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI 76 (282)
T ss_dssp HHHHHHHHHH-TTT-CHHHHHHHHHHHHHH---------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC
T ss_pred HHHHHHHhcc-cCC-CHHHHHHHHHHHHHh---------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4456666665 464 999999999999987 36678889989 89999999999999999999997
Q ss_pred hhhhcCCchh------------HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 004829 296 PVLEDGQDHA------------LAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ 363 (728)
Q Consensus 296 ~~~~~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 363 (728)
.......... ...-.+.+.++.++...|+|++|...|..++.. .|... +.+.+|.+++.
T Consensus 77 ~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~ 147 (282)
T 4f3v_A 77 SMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYGA 147 (282)
T ss_dssp CGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHHH
T ss_pred ChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHHH
Confidence 6433222211 011235778899999999999999999987764 67777 89999999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChh-HHHHHHHHHHH
Q 004829 364 SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELD-VASIDCSIGDA 442 (728)
Q Consensus 364 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~la~~ 442 (728)
.++|++|+.+|+.+.... +......+++.+|.++..+|++++|+.+|++++. ....|. ...+++.+|.+
T Consensus 148 ~~r~~dA~~~l~~a~~~~------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~----g~~~P~~~~da~~~~gla 217 (282)
T 4f3v_A 148 AERWTDVIDQVKSAGKWP------DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND----SPAGEACARAIAWYLAMA 217 (282)
T ss_dssp TTCHHHHHHHHTTGGGCS------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----STTTTTTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhhccC------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc----CCCCccccHHHHHHHHHH
Confidence 999999999998654321 1122345789999999999999999999999862 222144 67799999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004829 443 YLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRL 481 (728)
Q Consensus 443 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 481 (728)
+..+|+.++|...|++++.. +|. ..+...|
T Consensus 218 L~~lGr~deA~~~l~~a~a~--------~P~-~~~~~aL 247 (282)
T 4f3v_A 218 RRSQGNESAAVALLEWLQTT--------HPE-PKVAAAL 247 (282)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--------SCC-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--------CCc-HHHHHHH
Confidence 99999999999999999998 666 5554444
No 124
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.38 E-value=1.9e-12 Score=133.58 Aligned_cols=163 Identities=10% Similarity=0.049 Sum_probs=139.4
Q ss_pred HcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC--------cH
Q 004829 487 KIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS--------TI 558 (728)
Q Consensus 487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~ 558 (728)
.++++++|+..+++++.. .+..+.++..+|.+++..|++++|+.+|++++.+.+....... ..
T Consensus 125 ~L~~~~~A~~~~~~a~~~---------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~ 195 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEE---------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR 195 (336)
T ss_dssp EEEEEECCCCGGGCCHHH---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHH---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHH
Confidence 456777888888887776 5678899999999999999999999999999999876532111 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829 559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY 638 (728)
Q Consensus 559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 638 (728)
..++.++|.+|..+|++++|+.+|++++++ .+....+++.+|.+|..+|++++|+.+|++++++
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------- 259 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-------- 259 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------
Confidence 578899999999999999999999999998 3445689999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHH
Q 004829 639 HHDTLGVYSNLAGTYDAMGRIDDA-IEILEYVVGMRE 674 (728)
Q Consensus 639 ~~~~~~~~~~La~~~~~~g~~~~A-~~~~~~al~~~~ 674 (728)
+|....++..++.++..+|++++| ...|++++....
T Consensus 260 ~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 260 YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888999999999999999999 557777776543
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.38 E-value=3.9e-12 Score=113.85 Aligned_cols=105 Identities=10% Similarity=-0.003 Sum_probs=95.9
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829 553 GQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILE 632 (728)
Q Consensus 553 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 632 (728)
...+....+++.+|.++...|++++|+.+|++++.+ .|....++..+|.+|..+|++++|+.+|++++.+
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-- 99 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-- 99 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--
Confidence 344556788999999999999999999999999998 4555789999999999999999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 633 KEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 633 ~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
+|+...+++++|.+|..+|++++|+.+|++++++.
T Consensus 100 ------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 100 ------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp ------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888899999999999999999999999999964
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.37 E-value=6.2e-13 Score=119.07 Aligned_cols=106 Identities=8% Similarity=0.034 Sum_probs=98.5
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004829 597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK 676 (728)
Q Consensus 597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~ 676 (728)
.+....+++.+|.++...|++++|+.+|++++.+ +|....++.++|.+|..+|++++|+.+|++++.+.
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--- 100 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--- 100 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---
Confidence 5667889999999999999999999999999999 88888999999999999999999999999999964
Q ss_pred cCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccc
Q 004829 677 LGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN 719 (728)
Q Consensus 677 ~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~ 719 (728)
|+...+++++|.+|..+|++++|+ ..++.++...|+.
T Consensus 101 -----P~~~~~~~~lg~~~~~lg~~~eA~-~~~~~al~l~~~~ 137 (151)
T 3gyz_A 101 -----KNDYTPVFHTGQCQLRLKAPLKAK-ECFELVIQHSNDE 137 (151)
T ss_dssp -----SSCCHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCCCH
T ss_pred -----CCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCH
Confidence 667789999999999999999999 9999999988764
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.37 E-value=6.6e-13 Score=136.98 Aligned_cols=163 Identities=14% Similarity=0.151 Sum_probs=135.0
Q ss_pred HcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-------cHHHHH
Q 004829 530 SMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK-------SALFGI 602 (728)
Q Consensus 530 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~ 602 (728)
.++++++|+..|++++...+.. +.++..+|.+|+..|++++|+.+|++++.+........ .+....
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~-------a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 197 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQ-------STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 197 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHH-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHH-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 4566777777777777665443 67889999999999999999999999999843321100 112257
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004829 603 ALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANP 682 (728)
Q Consensus 603 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p 682 (728)
++.++|.+|..+|++++|+.+|++++.+ +|....+++++|.+|..+|++++|+.+|++++++ +|
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P 261 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YP 261 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CC
Confidence 8999999999999999999999999999 8888899999999999999999999999999996 36
Q ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhh
Q 004829 683 DVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDS 715 (728)
Q Consensus 683 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~ 715 (728)
....++..++.++..+|++++|....++.++..
T Consensus 262 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777899999999999999999965666666544
No 128
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=2.2e-09 Score=119.59 Aligned_cols=412 Identities=10% Similarity=-0.032 Sum_probs=257.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHH
Q 004829 240 QKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTY 319 (728)
Q Consensus 240 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 319 (728)
.+-+..+++++.. +|.....|..+.......+.++.+...|++++..+ +... ..|...+..-
T Consensus 49 ~d~i~~lE~~l~~---------np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-----P~~~----~lW~~Yi~~E 110 (679)
T 4e6h_A 49 SDVIGKLNDMIEE---------QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-----PLMA----NIWCMRLSLE 110 (679)
T ss_dssp SCHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-----CCCH----HHHHHHHHHH
Confidence 4455566666653 24456678888888888999999999999999886 3332 2377777777
Q ss_pred HHhCC---HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHH-cCCC
Q 004829 320 AMLGQ---IENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQF--------DEAEKICQMALDIHRE-NTSP 387 (728)
Q Consensus 320 ~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~~~~-~~~~ 387 (728)
...++ ++.+..+|++++.... ..| ....|..........++. +.....|+.|+..... ..
T Consensus 111 ~~~~~~~~~~~v~~lfeRal~~~~-----~~~-sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~-- 182 (679)
T 4e6h_A 111 FDKMEELDAAVIEPVLARCLSKEL-----GNN-DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEP-- 182 (679)
T ss_dssp HTC--CCCHHHHHHHHHHHTCSSS-----CCC-CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCS--
T ss_pred HhhCCcchHHHHHHHHHHHHHhcC-----CCC-CHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccc--
Confidence 77888 9999999999998721 013 233555555444444443 3344777777765543 22
Q ss_pred CcHHHHHHHHHHHHHH---------HHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH-------------HHH
Q 004829 388 ASIEEAADRRLMGLIC---------DSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDA-------------YLS 445 (728)
Q Consensus 388 ~~~~~a~~~~~lg~~~---------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~-------------~~~ 445 (728)
... .+|....... ..+++.+.+...|.+++.+ +.. ....+|...... -..
T Consensus 183 ~s~---~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i----P~~-~~~~~w~~Y~~fe~~~~~~~a~~~~~e~ 254 (679)
T 4e6h_A 183 KSI---QFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ----PMD-CLESMWQRYTQWEQDVNQLTARRHIGEL 254 (679)
T ss_dssp SCH---HHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS----CCS-SHHHHHHHHHHHHHHHCTTTHHHHHHHH
T ss_pred cch---HHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC----ccH-HHHHHHHHHHHHHHhcCcchHHHHHHHh
Confidence 221 1232222221 2334567788888887632 111 111222111111 011
Q ss_pred hCCHHHHHHHHHHHHHHHHHhc---CC---------------CCHHHHHHHHHHHHHHHHcC-------ChHHHHHHHHH
Q 004829 446 LARFDEAIFSYHKALTAFKSAK---GE---------------NHPAVASVFVRLADLYHKIG-------KLRDSKSYCEN 500 (728)
Q Consensus 446 ~g~~~~A~~~~~~al~~~~~~~---~~---------------~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~ 500 (728)
..+|+.|...+.+.-.+...+. .. ........|......-...+ ........|++
T Consensus 255 ~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~ 334 (679)
T 4e6h_A 255 SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQ 334 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHH
Confidence 1233444444433222211110 00 01122333333333222211 12345678999
Q ss_pred HHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Q 004829 501 ALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAV-KLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSY 579 (728)
Q Consensus 501 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 579 (728)
++..+ +....+|...+..+...|+.++|. ..|++|+...+.. ..++..++.+....|++++|.
T Consensus 335 aL~~~---------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s-------~~Lwl~~a~~ee~~~~~e~aR 398 (679)
T 4e6h_A 335 AAQHV---------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS-------AVLAFSLSEQYELNTKIPEIE 398 (679)
T ss_dssp HHHHT---------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHc---------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCCHHHHH
Confidence 99884 335678899999999999999997 9999999876644 456677889999999999999
Q ss_pred HHHHHHHHHHHHh-------CCCC-------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004829 580 NTLKSAISKFRTS-------GEKK-------SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGV 645 (728)
Q Consensus 580 ~~~~~al~~~~~~-------~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 645 (728)
..|++++...... .+.. ......+|...+.+....|+.+.|...|.+|++.. .+....+
T Consensus 399 ~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-------~~~~~~l 471 (679)
T 4e6h_A 399 TTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-------KLVTPDI 471 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-------GGSCTHH
T ss_pred HHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCChHH
Confidence 9999999864211 1100 01234577778888888899999999999998751 0111235
Q ss_pred HHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcc
Q 004829 646 YSNLAGTYDAMG-RIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNS 717 (728)
Q Consensus 646 ~~~La~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~ 717 (728)
+...|.+....+ +++.|..+|+++++.+ |.....+...+......|+.+.|. ..++.++...+
T Consensus 472 yi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--------p~~~~~w~~y~~fe~~~~~~~~AR-~lferal~~~~ 535 (679)
T 4e6h_A 472 YLENAYIEYHISKDTKTACKVLELGLKYF--------ATDGEYINKYLDFLIYVNEESQVK-SLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHTTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------CCchHHHHHHHHHHHhCCCHHHHH-HHHHHHHHhcC
Confidence 556676666665 4999999999999975 444455667778888999999999 99999888766
No 129
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.36 E-value=4.3e-11 Score=103.93 Aligned_cols=109 Identities=14% Similarity=0.179 Sum_probs=97.3
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004829 514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG 593 (728)
Q Consensus 514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 593 (728)
..+.+.++.++|..++..|+|++|+.+|++++++.+.. ..++.++|.+|..+|++++|+..|++++++.....
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~-------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~ 76 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN-------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence 34577889999999999999999999999999987655 67889999999999999999999999999877654
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 594 EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 594 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
.. ....+.++..+|.++..+|++++|+.+|++++..
T Consensus 77 ~~-~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 77 AD-YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp CC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hh-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 43 4456789999999999999999999999999987
No 130
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.36 E-value=9.9e-12 Score=108.02 Aligned_cols=109 Identities=15% Similarity=0.151 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
.++.+.++.++|..++..|+|++|+.+|++++++ .|..+.++.++|.+|..+|++++|+..|++++++.+.
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL---------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence 3566788999999999999999999999999999 3445778999999999999999999999999999998
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK 588 (728)
Q Consensus 551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 588 (728)
........+.++..+|.++..+|++++|+.+|++++..
T Consensus 75 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 86666677889999999999999999999999999976
No 131
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.35 E-value=4.6e-12 Score=113.45 Aligned_cols=114 Identities=11% Similarity=0.044 Sum_probs=98.9
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004829 557 TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG 636 (728)
Q Consensus 557 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 636 (728)
.....++.+|.++...|++++|+..|++++.+ .+....++..+|.++...|++++|+.+|++++.+
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------ 84 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM------ 84 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence 34677889999999999999999999999987 3445678999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 004829 637 PYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRL 691 (728)
Q Consensus 637 ~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~L 691 (728)
+|+...+++++|.+|..+|++++|+.+|++++++. +.+|.........
T Consensus 85 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~ 132 (148)
T 2vgx_A 85 --DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI-----ANXPEFXELSTRV 132 (148)
T ss_dssp --STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCGGGHHHHHHH
T ss_pred --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCCCcchHHHHHH
Confidence 77778899999999999999999999999999976 4566654444333
No 132
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.34 E-value=2.3e-11 Score=106.25 Aligned_cols=134 Identities=18% Similarity=0.279 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829 560 GIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYH 639 (728)
Q Consensus 560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 639 (728)
.++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.+|++++.. .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~ 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence 35678999999999999999999999876 1223567889999999999999999999999988 6
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829 640 HDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ 718 (728)
Q Consensus 640 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~ 718 (728)
|....++..+|.++...|++++|+.++++++... |....++..++.++...|++++|. ..++.++...|.
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~ 135 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAI-EYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHHSTT
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHHccHHHHH-HHHHHHHccCCC
Confidence 6667789999999999999999999999999852 555678899999999999999999 899988887764
No 133
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.33 E-value=4.7e-11 Score=104.24 Aligned_cols=131 Identities=20% Similarity=0.339 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcH
Q 004829 519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSA 598 (728)
Q Consensus 519 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 598 (728)
.++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++... +
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~ 66 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------P 66 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------T
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc-------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--------C
Confidence 467889999999999999999999999875432 5677889999999999999999999998761 2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 599 LFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM 672 (728)
Q Consensus 599 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~ 672 (728)
....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|..+|++++.+
T Consensus 67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 23467889999999999999999999999988 6666778999999999999999999999999874
No 134
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.33 E-value=4.8e-11 Score=125.82 Aligned_cols=122 Identities=7% Similarity=0.016 Sum_probs=114.1
Q ss_pred HHcCCHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 004829 529 QSMNELEQAVKLLNKALKIYGKTPGQQS-TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQM 607 (728)
Q Consensus 529 ~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 607 (728)
...|+|++|+.+|++++++.....+..+ .++.++.+||.+|..+|+|++|+.++++++++.+...+..++..+..+++|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3568999999999999999998877765 788899999999999999999999999999999999998999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004829 608 GLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLA 650 (728)
Q Consensus 608 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La 650 (728)
|.+|..+|++++|+.+|++|+++....+|++||.+..+..+|.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 9999999999999999999999999999999999988877664
No 135
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.32 E-value=1.3e-10 Score=116.91 Aligned_cols=228 Identities=9% Similarity=0.035 Sum_probs=184.7
Q ss_pred HHHhCCHH-HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHHcCCCCC
Q 004829 443 YLSLARFD-EAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGK----------LRDSKSYCENALKIYGKPNHG 511 (728)
Q Consensus 443 ~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~ 511 (728)
....|.+. +|+.++.+++.+ +|....+++..+.++..++. +++++.++..++..
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~------- 103 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV------- 103 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-------
Confidence 34566665 799999999998 99999999999999988776 68999999999988
Q ss_pred CCcHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Q 004829 512 IPSEEIASGLIDIAAIYQSMNE--LEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGN-YSDSYNTLKSAISK 588 (728)
Q Consensus 512 ~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 588 (728)
+|....+|...+.++...++ +++++.++.+++++.+.. ..++...+.+....|. +++++.++.+++..
T Consensus 104 --~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN-------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 104 --NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp --CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 44567889999999999994 899999999999987766 5788889999999998 69999999999987
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004829 589 FRTSGEKKSALFGIALNQMGLACVQR--------------YTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYD 654 (728)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~ 654 (728)
++....++..++.++... +.++++++++.+++.+ +|+...+++.+..++.
T Consensus 175 --------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 175 --------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLG 238 (331)
T ss_dssp --------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHH
Confidence 344457888888888876 4689999999999999 8888889987766666
Q ss_pred Hc-----------CChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH---hCChhHHHHHHHHHHHhhcccc
Q 004829 655 AM-----------GRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE---AGRVRNRKSRSLVTFLDSNSQN 719 (728)
Q Consensus 655 ~~-----------g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~---~g~~~~A~~~~l~~ll~~~~~~ 719 (728)
.. +.++++++++++++++. |+...++..++.+... .|..++.. ..+..+++.+|-.
T Consensus 239 ~~~~~~~~~~~~~~~l~~el~~~~elle~~--------pd~~w~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~Dp~r 308 (331)
T 3dss_A 239 AGSGRCELSVEKSTVLQSELESCKELQELE--------PENKWCLLTIILLMRALDPLLYEKETL-QYFSTLKAVDPMR 308 (331)
T ss_dssp SSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCTTTTHHHHH-HHHHHHHHHCGGG
T ss_pred hccCccccchHHHHHHHHHHHHHHHHHhhC--------cccchHHHHHHHHHHhhcccccHHHHH-HHHHHHHHhCcch
Confidence 55 35678888888888753 5556666666554433 56677777 8999999998864
No 136
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.32 E-value=4.4e-11 Score=126.50 Aligned_cols=131 Identities=9% Similarity=-0.011 Sum_probs=121.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Q 004829 526 AIYQSMNELEQAVKLLNKALKIYGKTPGQQS-TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIAL 604 (728)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 604 (728)
.-+..+|++++|+..+++++++.....+..+ .++.++.++|.+|..+|+|++|+.++++++.+.+...+..++..+..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455789999999999999999888777654 778899999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004829 605 NQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM 656 (728)
Q Consensus 605 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~ 656 (728)
++||.+|..+|++++|+.+|++|+++++..+|++||.+..++.+|+.+...+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887654
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.31 E-value=5.7e-12 Score=119.26 Aligned_cols=166 Identities=11% Similarity=0.076 Sum_probs=121.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCc-
Q 004829 479 VRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQST- 557 (728)
Q Consensus 479 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~- 557 (728)
...+......|++++|.+.+...... .+..+..+..+|.+++..|++++|+.+|++++.+.+..+.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 78 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEE---------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI 78 (198)
T ss_dssp --------------CCCSGGGCCHHH---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHH---------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh
Confidence 34455666778888887777755444 45577889999999999999999999999999987765322211
Q ss_pred --------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 558 --------IAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEART 629 (728)
Q Consensus 558 --------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 629 (728)
...++.++|.+|..+|++++|+.++++++.+ .+....+++.+|.+|..+|++++|+.+|++++.
T Consensus 79 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 79 LLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 1368889999999999999999999999987 333467899999999999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH-HHHHHH
Q 004829 630 ILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAI-EILEYV 669 (728)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~-~~~~~a 669 (728)
+ +|....++..++.++..+++..++. ..|.+.
T Consensus 151 ~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 151 L--------NPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp H--------STTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred H--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 7888889999999999988887776 334433
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.31 E-value=6.3e-11 Score=108.02 Aligned_cols=138 Identities=14% Similarity=0.064 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004829 515 EEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE 594 (728)
Q Consensus 515 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 594 (728)
...+..+..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.++++++.+
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 76 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIEL------ 76 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 3467789999999999999999999999999986554 678889999999999999999999999987
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH--HHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 595 KKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVY--SNLAGTYDAMGRIDDAIEILEYVVGM 672 (728)
Q Consensus 595 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--~~La~~~~~~g~~~~A~~~~~~al~~ 672 (728)
.+....++..+|.++...|++++|+.+|++++.+ .|....++ ..++..+...|++++|+.++.++..+
T Consensus 77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 2334578999999999999999999999999998 55555555 45555588899999999999999887
Q ss_pred HHH
Q 004829 673 REE 675 (728)
Q Consensus 673 ~~~ 675 (728)
...
T Consensus 147 ~~~ 149 (166)
T 1a17_A 147 VDS 149 (166)
T ss_dssp HHH
T ss_pred hcc
Confidence 754
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.30 E-value=2.1e-11 Score=122.29 Aligned_cols=195 Identities=13% Similarity=0.072 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC
Q 004829 432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG 511 (728)
Q Consensus 432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 511 (728)
.+..+..+|..+...|++++|+.+|++++.. .|....++.++|.+|..+|++++|+..+++++++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 67 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------- 67 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 3567889999999999999999999999998 7778899999999999999999999999999987
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT 591 (728)
Q Consensus 512 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 591 (728)
.+....+++.+|.+|..+|++++|+.+|++++++.+............... . .++..... ....
T Consensus 68 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~------~~~~~~~~----~~~~ 131 (281)
T 2c2l_A 68 --DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR----I------AKKKRWNS----IEER 131 (281)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH----H------HHHHHHHH----HHHT
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH----H------HHHHHHHH----HHHH
Confidence 344567899999999999999999999999999998763332222111111 1 11111111 1111
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-CChHHHHHHHHHHH
Q 004829 592 SGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM-GRIDDAIEILEYVV 670 (728)
Q Consensus 592 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~-g~~~~A~~~~~~al 670 (728)
.... .. .+...++.++ .|++++|++.|+++++. +|........++.++... +.+++|..+|.++.
T Consensus 132 ~~~~-~~---~i~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 132 RIHQ-ES---ELHSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp CCCC-CC---HHHHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHhh-hH---HHHHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1122 22 2334444443 68999999999999987 676666777777777665 67888999988876
Q ss_pred H
Q 004829 671 G 671 (728)
Q Consensus 671 ~ 671 (728)
+
T Consensus 198 ~ 198 (281)
T 2c2l_A 198 E 198 (281)
T ss_dssp C
T ss_pred c
Confidence 5
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.30 E-value=7.2e-11 Score=102.33 Aligned_cols=122 Identities=12% Similarity=0.082 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004829 558 IAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGP 637 (728)
Q Consensus 558 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 637 (728)
.+..+..+|..++..|++++|+.+|++++.+ .+....++..+|.++...|++++|+..|++++.+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------- 67 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------- 67 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 3567889999999999999999999999988 3334689999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 004829 638 YHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE 697 (728)
Q Consensus 638 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~ 697 (728)
+|....+++.+|.++..+|++++|+.+|++++.+..... ..|....++..++.+...
T Consensus 68 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 68 -DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHHh
Confidence 888888999999999999999999999999999864442 236667777777776554
No 141
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.29 E-value=9.3e-11 Score=106.88 Aligned_cols=141 Identities=13% Similarity=0.097 Sum_probs=119.7
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCC
Q 004829 431 DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH 510 (728)
Q Consensus 431 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 510 (728)
..+..+..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++.+.
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----- 77 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD----- 77 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence 34667899999999999999999999999998 77778899999999999999999999999999983
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829 511 GIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR 590 (728)
Q Consensus 511 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 590 (728)
+....++..+|.++...|++++|+.+|++++.+.+.. .....+..++..+...|++++|+.++.++..++.
T Consensus 78 ----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 78 ----KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-----KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 3346789999999999999999999999999886543 1223334556668899999999999999988876
Q ss_pred HhC
Q 004829 591 TSG 593 (728)
Q Consensus 591 ~~~ 593 (728)
...
T Consensus 149 ~~~ 151 (166)
T 1a17_A 149 SLD 151 (166)
T ss_dssp HCC
T ss_pred ccc
Confidence 644
No 142
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.29 E-value=7.3e-10 Score=111.54 Aligned_cols=236 Identities=7% Similarity=-0.023 Sum_probs=185.8
Q ss_pred HcCCHH-HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHHhcCCCCHH
Q 004829 405 SKGDYE-AALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLAR----------FDEAIFSYHKALTAFKSAKGENHPA 473 (728)
Q Consensus 405 ~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~ 473 (728)
..|++. +|+..+.+++.+ .|....+|+..+.++...+. +++++.++..++.. +|.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------~PK 106 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPK 106 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CTT
T ss_pred HcCCCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------CCC
Confidence 456654 789999888754 68888899999999988776 68888999998887 899
Q ss_pred HHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhc
Q 004829 474 VASVFVRLADLYHKIGK--LRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNE-LEQAVKLLNKALKIYGK 550 (728)
Q Consensus 474 ~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~ 550 (728)
...++...+.++...++ +++++.++.++++. ++....+|...+.+....|. +++++.++.++++..+.
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~---------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~ 177 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEA---------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 177 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC
Confidence 99999999999999994 89999999999998 44567889999999999998 69999999999988665
Q ss_pred CCCCCCcHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc--
Q 004829 551 TPGQQSTIAGIEAQMGVMYYMT--------------GNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR-- 614 (728)
Q Consensus 551 ~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-- 614 (728)
. ..++..++.++... +.++++++++.+++.+ .|....+++.+..++...
T Consensus 178 N-------~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d~SaW~Y~r~ll~~~~~ 242 (331)
T 3dss_A 178 N-------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGAGSG 242 (331)
T ss_dssp C-------HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHSSSC
T ss_pred C-------HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccC
Confidence 5 56778888888776 4588999999999987 344456676555555444
Q ss_pred ---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH---HcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004829 615 ---------YTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYD---AMGRIDDAIEILEYVVGMREEKLGTANP 682 (728)
Q Consensus 615 ---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~p 682 (728)
+.++++++++.+++++ .|+...++..++.+.. ..|..++...++.+.+++ +|
T Consensus 243 ~~~~~~~~~~~l~~el~~~~elle~--------~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--------Dp 306 (331)
T 3dss_A 243 RCELSVEKSTVLQSELESCKELQEL--------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--------DP 306 (331)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--------CG
T ss_pred ccccchHHHHHHHHHHHHHHHHHhh--------CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--------Cc
Confidence 3588999999999998 7776666665555433 357788899999998885 46
Q ss_pred HHHHHHHHHHHH
Q 004829 683 DVEDEKRRLAEL 694 (728)
Q Consensus 683 ~~~~~~~~La~~ 694 (728)
....-|..|..-
T Consensus 307 ~r~~~y~d~~~~ 318 (331)
T 3dss_A 307 MRAAYLDDLRSK 318 (331)
T ss_dssp GGHHHHHHHHHH
T ss_pred chhhHHHHHHHH
Confidence 666555555443
No 143
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.28 E-value=7.1e-12 Score=125.74 Aligned_cols=195 Identities=12% Similarity=0.051 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829 266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE 345 (728)
Q Consensus 266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 345 (728)
+..+..+|..++..|+|++|+.+|++++.+. +..+ .++..+|.+|..+|++++|+..|++++++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-----PLVA----VYYTNRALCYLKMQQPEQALADCRRALEL------- 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 5568889999999999999999999999875 4443 35999999999999999999999999988
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 004829 346 TDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAA 425 (728)
Q Consensus 346 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 425 (728)
+|....+++.+|.+|...|++++|+..|++++.+.+......... ++..+ . ..++..+..... ..
T Consensus 68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~---~~~~~--~------~~~~~~~~~~~~---~~ 132 (281)
T 2c2l_A 68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD---IPSAL--R------IAKKKRWNSIEE---RR 132 (281)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSH---HHHHH--H------HHHHHHHHHHHH---TC
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHH---HHHHH--H------HHHHHHHHHHHH---HH
Confidence 788889999999999999999999999999999998764321110 11111 1 111111111111 11
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHH
Q 004829 426 NGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKI-GKLRDSKSYCENALKI 504 (728)
Q Consensus 426 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 504 (728)
....+. +...++.++ .|++++|++.+++++++ .|........++.++... +.+++|...|.++.+.
T Consensus 133 ~~~~~~---i~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 133 IHQESE---LHSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp CCCCCH---HHHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhHH---HHHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 222232 334444443 79999999999999887 666666677777777666 6788899999887653
No 144
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.28 E-value=3.5e-11 Score=115.10 Aligned_cols=141 Identities=19% Similarity=0.184 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 004829 393 AADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP 472 (728)
Q Consensus 393 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 472 (728)
+..++.+|.++...|++++|+..|.+++ .+ ...++.++|.+|...|++++|+.+|++++.+ .|
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--------~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~ 68 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--------DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------DK 68 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--------SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--------CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------Cc
Confidence 4457889999999999999999999874 11 3579999999999999999999999999998 77
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC-------CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829 473 AVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN-------HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKAL 545 (728)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 545 (728)
....++..+|.+|...|++++|+.+|++++.+..... .....+....++..+|.+|...|++++|+.+|++++
T Consensus 69 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7889999999999999999999999999999754311 000234567889999999999999999999999999
Q ss_pred HHHhc
Q 004829 546 KIYGK 550 (728)
Q Consensus 546 ~~~~~ 550 (728)
++.+.
T Consensus 149 ~~~p~ 153 (213)
T 1hh8_A 149 SMKSE 153 (213)
T ss_dssp TTCCS
T ss_pred HcCcc
Confidence 87554
No 145
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.27 E-value=9.8e-11 Score=101.49 Aligned_cols=122 Identities=14% Similarity=0.014 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004829 517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK 596 (728)
Q Consensus 517 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 596 (728)
.+..+..+|..++..|++++|+.+|++++.+.+.. ..++..+|.+|..+|++++|+..|++++.+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------- 67 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEAIADCNKAIEK-------- 67 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 56788999999999999999999999999987655 578899999999999999999999999998
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004829 597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA 655 (728)
Q Consensus 597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~ 655 (728)
.+....++..+|.++...|++++|+..|++++.+...... .|....++..++.+...
T Consensus 68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN--GSSAREIDQLYYKASQQ 124 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT--TTTHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCC--chhHHHHHHHHHHHHHh
Confidence 3344678999999999999999999999999999322211 26667777777776654
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.27 E-value=1.2e-11 Score=110.65 Aligned_cols=107 Identities=11% Similarity=-0.002 Sum_probs=96.7
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829 428 HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK 507 (728)
Q Consensus 428 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (728)
..|....+++.+|.++...|++++|+..|++++.+ .|....++..+|.++...|++++|+.+|++++.+.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-- 85 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-- 85 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--
Confidence 36778889999999999999999999999999998 88888999999999999999999999999999983
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829 508 PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 508 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 551 (728)
|....+++.+|.+|...|++++|+.+|++++++.+..
T Consensus 86 -------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 86 -------IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp -------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred -------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3345678999999999999999999999999998765
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.26 E-value=6e-12 Score=119.11 Aligned_cols=169 Identities=11% Similarity=0.059 Sum_probs=118.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc-----
Q 004829 523 DIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS----- 597 (728)
Q Consensus 523 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----- 597 (728)
..+......|++++|.+.+........ ..+..+..+|.+++..|++++|+.+|++++.+.........
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 81 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKV-------QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD 81 (198)
T ss_dssp -------------CCCSGGGCCHHHHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHH-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence 344555566777776666654433222 23567889999999999999999999999986433211100
Q ss_pred ---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004829 598 ---ALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMRE 674 (728)
Q Consensus 598 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~ 674 (728)
.....++.++|.++...|++++|+.+|++++.+ +|....+++.+|.+|..+|++++|+.+|++++.+
T Consensus 82 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-- 151 (198)
T 2fbn_A 82 KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-- 151 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--
Confidence 011378999999999999999999999999998 7888889999999999999999999999999986
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHh
Q 004829 675 EKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLD 714 (728)
Q Consensus 675 ~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~ 714 (728)
+|....++..++.++..+++..++....+..++.
T Consensus 152 ------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 152 ------NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp ------STTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3677788999999999999998887555555544
No 148
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.26 E-value=1.1e-10 Score=117.96 Aligned_cols=245 Identities=10% Similarity=-0.008 Sum_probs=187.7
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHcCC
Q 004829 430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIG-KLRDSKSYCENALKIYGKP 508 (728)
Q Consensus 430 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~ 508 (728)
+....++..+..+....+..++|+..+.+++.+ +|....+++..+.++..+| .+++++.++..++...
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--- 119 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--- 119 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC---
Confidence 344555556666666677778999999999998 8889999999999999999 5999999999999873
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHH--------HH
Q 004829 509 NHGIPSEEIASGLIDIAAIYQSM-N-ELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYS--------DS 578 (728)
Q Consensus 509 ~~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A 578 (728)
|....+|...+.++... + ++++++.++.++++..++. ..++...+.++...|.++ ++
T Consensus 120 ------PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN-------y~AW~~R~wvl~~l~~~~~~~~~~~~eE 186 (349)
T 3q7a_A 120 ------LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN-------YHTWAYLHWLYSHFSTLGRISEAQWGSE 186 (349)
T ss_dssp ------CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC-------HHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred ------CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccccccchhhHHHH
Confidence 34567888899988887 7 8899999999988765554 567788888888888877 99
Q ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004829 579 YNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYT-------INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAG 651 (728)
Q Consensus 579 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~ 651 (728)
++++.++++. ++....++...+.++...+. ++++++++.+++.+ +|....+++.+..
T Consensus 187 Le~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr~ 250 (349)
T 3q7a_A 187 LDWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLRG 250 (349)
T ss_dssp HHHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHH
T ss_pred HHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 9999999987 44456799999999998886 79999999999999 8999999999999
Q ss_pred HHHHcCChHH------------HHH-HHHHHHHHHHHHcCCC-----ChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 004829 652 TYDAMGRIDD------------AIE-ILEYVVGMREEKLGTA-----NPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFL 713 (728)
Q Consensus 652 ~~~~~g~~~~------------A~~-~~~~al~~~~~~~~~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll 713 (728)
++...|+... .+. .+....+.+..+.+.. .+....++.-|+.+|...|+.++|. +.++.+.
T Consensus 251 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~-~~~~~l~ 329 (349)
T 3q7a_A 251 FLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAA-KVFEKLS 329 (349)
T ss_dssp HHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred HHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Confidence 9998887510 000 0112222222222221 2456678899999999999999999 8888886
Q ss_pred hh
Q 004829 714 DS 715 (728)
Q Consensus 714 ~~ 715 (728)
+.
T Consensus 330 ~~ 331 (349)
T 3q7a_A 330 SE 331 (349)
T ss_dssp HT
T ss_pred hh
Confidence 43
No 149
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.25 E-value=4.8e-11 Score=114.10 Aligned_cols=140 Identities=11% Similarity=-0.001 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829 560 GIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYH 639 (728)
Q Consensus 560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 639 (728)
..++.+|.++...|++++|+.+|++++. . ...++..+|.++...|++++|+.+|++++.+ +
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~ 67 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------D 67 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 3467899999999999999999998841 1 2468999999999999999999999999998 7
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc--------CCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 004829 640 HDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKL--------GTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVT 711 (728)
Q Consensus 640 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ 711 (728)
|....+++.+|.+|..+|++++|+.+|++++.+..... ....|....++..+|.+|..+|++++|+ ..++.
T Consensus 68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~ 146 (213)
T 1hh8_A 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE-EQLAL 146 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH-HHHHH
T ss_pred ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH-HHHHH
Confidence 78888999999999999999999999999998542100 0033566799999999999999999999 99999
Q ss_pred HHhhcccc
Q 004829 712 FLDSNSQN 719 (728)
Q Consensus 712 ll~~~~~~ 719 (728)
++...|..
T Consensus 147 al~~~p~~ 154 (213)
T 1hh8_A 147 ATSMKSEP 154 (213)
T ss_dssp HHTTCCSG
T ss_pred HHHcCccc
Confidence 99988854
No 150
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.25 E-value=4.7e-11 Score=108.78 Aligned_cols=133 Identities=13% Similarity=0.087 Sum_probs=111.0
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---CC-------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829 557 TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE---KK-------SALFGIALNQMGLACVQRYTINEAADLFEE 626 (728)
Q Consensus 557 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 626 (728)
..+..+..+|..++..|+|++|+.+|.+++.++..... .. .+....++.++|.+|..+|++++|+.++++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45677889999999999999999999999998665421 11 234567899999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHH-HHHHHHHHHHHHhCChhHHH
Q 004829 627 ARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVE-DEKRRLAELLKEAGRVRNRK 705 (728)
Q Consensus 627 al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~-~~~~~La~~~~~~g~~~~A~ 705 (728)
++.+ +|....+++.+|.+|..+|++++|+..|++++.+. |... .+...|+.+....++..++.
T Consensus 89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~~l~~~~~~~~~~~~~~ 152 (162)
T 3rkv_A 89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH--------PAAASVVAREMKIVTERRAEKKADS 152 (162)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------GGGHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 88889999999999999999999999999999963 6665 56667777777666555544
No 151
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.25 E-value=6.6e-12 Score=135.27 Aligned_cols=162 Identities=14% Similarity=0.165 Sum_probs=127.8
Q ss_pred HcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC-------CcHHHHH
Q 004829 530 SMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEK-------KSALFGI 602 (728)
Q Consensus 530 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~ 602 (728)
.++++++|+..|+.++...+.. +..+..+|.+++..|+|++|+.+|++++.+....... ..+....
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~-------a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 318 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQ-------AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHH-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence 3455566666666655554433 6678899999999999999999999999985432110 0122367
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004829 603 ALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANP 682 (728)
Q Consensus 603 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p 682 (728)
++.++|.+|..+|++++|+.+|++++.+ +|....+++++|.+|..+|++++|+.+|++++++ +|
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P 382 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NP 382 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CC
Confidence 8999999999999999999999999999 8888899999999999999999999999999984 58
Q ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHh
Q 004829 683 DVEDEKRRLAELLKEAGRVRNRKSRSLVTFLD 714 (728)
Q Consensus 683 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~ 714 (728)
....++..++.++..+|++++|....+..++.
T Consensus 383 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 383 QNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999988555555543
No 152
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.23 E-value=9e-11 Score=102.42 Aligned_cols=122 Identities=11% Similarity=0.169 Sum_probs=108.8
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829 555 QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKE 634 (728)
Q Consensus 555 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 634 (728)
.+.....+..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.+|++++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---- 79 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---- 79 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH----
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----
Confidence 4566788899999999999999999999999876 2223678999999999999999999999999998
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCC
Q 004829 635 YGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR 700 (728)
Q Consensus 635 ~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 700 (728)
.|....+++.+|.++...|++++|+.+|++++.+ +|....++..++.++..+|+
T Consensus 80 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 ----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred ----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 7777889999999999999999999999999985 47778899999999998875
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.23 E-value=1.1e-10 Score=103.69 Aligned_cols=104 Identities=10% Similarity=0.021 Sum_probs=93.8
Q ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 554 QQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK 633 (728)
Q Consensus 554 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 633 (728)
..+.....++.+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.+|++++.+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 81 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--- 81 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence 34445677889999999999999999999999987 3445678999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 634 EYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 634 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
+|....+++.+|.+|..+|++++|+.+|++++.+.
T Consensus 82 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 82 -----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp -----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77778899999999999999999999999999976
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.22 E-value=1.2e-10 Score=106.29 Aligned_cols=104 Identities=17% Similarity=0.059 Sum_probs=95.3
Q ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 554 QQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK 633 (728)
Q Consensus 554 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 633 (728)
.....+..+..+|.+++..|++++|+.+|++++.+ .+....++..+|.+|...|++++|+.+|++++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 74 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--- 74 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence 34566788999999999999999999999999998 3334689999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 634 EYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 634 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
+|....+++.+|.+|..+|++++|+.+|++++.+.
T Consensus 75 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 75 -----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 88888899999999999999999999999999976
No 155
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.22 E-value=2.9e-10 Score=100.27 Aligned_cols=114 Identities=17% Similarity=0.070 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS-----TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT 591 (728)
Q Consensus 517 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 591 (728)
.+..+..+|..++..|+|++|+..|++++++.+..+.... ..+.+|.++|.++..+|+|++|+.+|+++++++..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4667889999999999999999999999999988533211 23458999999999999999999999999999777
Q ss_pred hCCCCcHHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 592 SGEKKSALFGIAL----NQMGLACVQRYTINEAADLFEEARTIL 631 (728)
Q Consensus 592 ~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~ 631 (728)
.+..++ ..+.+| +++|.++..+|++++|+..|++++++.
T Consensus 90 ~~e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 90 RGELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HCCTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cccCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 766544 457788 999999999999999999999999993
No 156
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.22 E-value=2.3e-11 Score=131.09 Aligned_cols=159 Identities=13% Similarity=0.082 Sum_probs=130.5
Q ss_pred HcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC--------CcH
Q 004829 487 KIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQ--------STI 558 (728)
Q Consensus 487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~~ 558 (728)
.++++++|+..++.++.. .+..+..+..+|.+++..|+|++|+.+|++++.+.+...... ...
T Consensus 246 ~l~~~~~A~~~~~~~~~~---------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~ 316 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKE---------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFL 316 (457)
T ss_dssp EEEEEECCCCGGGSCHHH---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHH---------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHH
Confidence 456677788777777766 566888999999999999999999999999999987653211 123
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829 559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY 638 (728)
Q Consensus 559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 638 (728)
..++.++|.+|..+|++++|+.+|++++.+ .+....+++++|.+|..+|++++|+.+|++++++
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l-------- 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-------- 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence 578899999999999999999999999998 3445689999999999999999999999999998
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHH-HHHHH
Q 004829 639 HHDTLGVYSNLAGTYDAMGRIDDAIEI-LEYVV 670 (728)
Q Consensus 639 ~~~~~~~~~~La~~~~~~g~~~~A~~~-~~~al 670 (728)
+|....++..++.++..++++++|... |.+++
T Consensus 381 ~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 381 NPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp C----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999888753 44333
No 157
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.21 E-value=2.7e-10 Score=98.82 Aligned_cols=124 Identities=21% Similarity=0.188 Sum_probs=109.9
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829 513 PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS 592 (728)
Q Consensus 513 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 592 (728)
..+.....+..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.++++++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---- 75 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICI---- 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhc----
Confidence 356678899999999999999999999999999886543 567889999999999999999999999987
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh
Q 004829 593 GEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRI 659 (728)
Q Consensus 593 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~ 659 (728)
.+....++..+|.++...|++++|+.+|++++.+ .|....++..++.++..+|++
T Consensus 76 ----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 ----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred ----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence 2223578999999999999999999999999998 777777899999999999876
No 158
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.21 E-value=1.2e-10 Score=101.54 Aligned_cols=123 Identities=13% Similarity=0.063 Sum_probs=108.7
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829 513 PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS 592 (728)
Q Consensus 513 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 592 (728)
..+.....+..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.++++++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---- 79 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-------AKLYSNRAACYTKLLEFQLALKDCEECIQL---- 79 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC-------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH----
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh----
Confidence 455678899999999999999999999999999765433 578899999999999999999999999987
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 004829 593 GEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGR 658 (728)
Q Consensus 593 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~ 658 (728)
.+....++..+|.++...|++++|+.+|++++.+ .|....++..++.++..+|+
T Consensus 80 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 ----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred ----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 2334578999999999999999999999999998 88888899999999988774
No 159
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.20 E-value=9.4e-10 Score=111.16 Aligned_cols=254 Identities=11% Similarity=-0.023 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhcCCCC
Q 004829 393 AADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLA-RFDEAIFSYHKALTAFKSAKGENH 471 (728)
Q Consensus 393 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~ 471 (728)
..++..+..+....+..++|+..+.+++.+ .|....+|+..+.++..+| .+++++.++.+++.. +
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--------n 119 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRM------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--------N 119 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------T
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------C
Confidence 344555555666667778999999999877 6888899999999999999 599999999999987 8
Q ss_pred HHHHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHH--------HHHHHH
Q 004829 472 PAVASVFVRLADLYHKI-G-KLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELE--------QAVKLL 541 (728)
Q Consensus 472 ~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~ 541 (728)
|....++...+.++... + ++++++.++.+++.. ++....+|...+.++...|.++ ++++++
T Consensus 120 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~---------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~ 190 (349)
T 3q7a_A 120 LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP---------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWC 190 (349)
T ss_dssp CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS---------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHH
Confidence 99999999999999998 8 999999999999876 3445678899999998888887 999999
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc
Q 004829 542 NKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGN-------YSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR 614 (728)
Q Consensus 542 ~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 614 (728)
.++++..+.. ..++...+.++...++ ++++++++.+++.+ .+....+++.+..++...
T Consensus 191 ~k~I~~dp~N-------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 191 NEMLRVDGRN-------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHHCTTC-------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCC-------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhc
Confidence 9999886665 5688899999998887 78999999999987 444557888887787777
Q ss_pred CCHHH------------HHH-HHHHHHHHHHHhcCC-----CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004829 615 YTINE------------AAD-LFEEARTILEKEYGP-----YHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK 676 (728)
Q Consensus 615 g~~~~------------A~~-~~~~al~~~~~~~~~-----~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~ 676 (728)
|+... .+. .+......+...... ..+....++..|+.+|...|+.++|.++++...+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~----- 330 (349)
T 3q7a_A 256 SLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS----- 330 (349)
T ss_dssp TCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred CCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----
Confidence 65300 000 011111111111111 1134555889999999999999999999988764
Q ss_pred cCCCChHHHHHHHHH
Q 004829 677 LGTANPDVEDEKRRL 691 (728)
Q Consensus 677 ~~~~~p~~~~~~~~L 691 (728)
..+|-....+...
T Consensus 331 --~~dpir~~yw~~~ 343 (349)
T 3q7a_A 331 --EYDQMRAGYWEFR 343 (349)
T ss_dssp --TTCGGGHHHHHHH
T ss_pred --hhChHHHHHHHHH
Confidence 2456554444433
No 160
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.20 E-value=2.3e-10 Score=99.30 Aligned_cols=122 Identities=14% Similarity=0.068 Sum_probs=107.7
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004829 557 TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG 636 (728)
Q Consensus 557 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 636 (728)
.....+..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.+|++++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------ 75 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI------ 75 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc------
Confidence 44667889999999999999999999999987 2223578999999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChh
Q 004829 637 PYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVR 702 (728)
Q Consensus 637 ~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~ 702 (728)
.|....++..+|.++...|++++|+.+|++++.+ .|....++..++.++...|+++
T Consensus 76 --~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 76 --DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTCC
T ss_pred --CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcCC
Confidence 6777789999999999999999999999999985 3666778999999999998863
No 161
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.20 E-value=5.3e-10 Score=98.64 Aligned_cols=128 Identities=13% Similarity=0.129 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829 432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKG----ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK 507 (728)
Q Consensus 432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (728)
.+..+.++|..++..|+|++|+..|++++++...... ...|....+|.++|.++..+|+|++|+..|+++++++.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3567889999999999999999999999999443100 002234569999999999999999999999999998432
Q ss_pred CCCCCCcHHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHH
Q 004829 508 PNHGIPSEEIASGL----IDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGI 561 (728)
Q Consensus 508 ~~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 561 (728)
.. .-.|+...+| +++|.++..+|++++|+..|++++++.+...+....+..+
T Consensus 90 ~~--e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 90 RG--ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp HC--CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred cc--cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 21 1234567778 9999999999999999999999999999887766655444
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.19 E-value=2.6e-10 Score=101.20 Aligned_cols=107 Identities=11% Similarity=0.029 Sum_probs=96.2
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829 428 HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK 507 (728)
Q Consensus 428 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (728)
..|.....++.+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++.+.
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 82 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-- 82 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--
Confidence 46777888999999999999999999999999998 88888999999999999999999999999999983
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829 508 PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 508 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 551 (728)
|....++..+|.+|...|++++|+.+|++++.+.+..
T Consensus 83 -------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 83 -------INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp -------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred -------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3345678999999999999999999999999998865
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.19 E-value=3.4e-10 Score=103.26 Aligned_cols=107 Identities=18% Similarity=0.162 Sum_probs=91.7
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829 428 HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK 507 (728)
Q Consensus 428 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (728)
..+..+..+..+|.+++..|++++|+.+|++++.+ .|....++.++|.+|...|++++|+.+|++++.+.
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 75 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-- 75 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--
Confidence 45566788889999999999999999999999988 77778889999999999999999999999999883
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829 508 PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 508 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 551 (728)
+....++..+|.+|..+|++++|+.+|++++++.+..
T Consensus 76 -------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 76 -------PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred -------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 3346788899999999999999999999999888765
No 164
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.18 E-value=2e-10 Score=104.49 Aligned_cols=106 Identities=16% Similarity=0.131 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC------------ChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004829 391 EEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGH------------ELDVASIDCSIGDAYLSLARFDEAIFSYHK 458 (728)
Q Consensus 391 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 458 (728)
..+..+..+|..++..|++++|+..|.+++.+...... .+....++.++|.+|..+|++++|+.++++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34667899999999999999999999999987543211 456678999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 459 ALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI 504 (728)
Q Consensus 459 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (728)
++.+ .|....+++.+|.+|..+|++++|+..|++++.+
T Consensus 89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 9999 8888999999999999999999999999999999
No 165
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.16 E-value=9.2e-11 Score=108.56 Aligned_cols=122 Identities=15% Similarity=0.182 Sum_probs=104.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 004829 528 YQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQM 607 (728)
Q Consensus 528 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 607 (728)
+...|++++|+..+++++...+.. ..++..+|.+|...|++++|+.+|++++.+. +....++..+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l 84 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQN-------SEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAAL 84 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHH
Confidence 346789999999999999886544 5688899999999999999999999999873 2235688999
Q ss_pred HHH-HHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 608 GLA-CVQRYTI--NEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM 672 (728)
Q Consensus 608 a~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~ 672 (728)
|.+ +...|++ ++|+.+|++++.+ +|....+++.+|.+|...|++++|+.+|++++.+
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 999 8899999 9999999999998 7777889999999999999999999999999984
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.15 E-value=4.4e-10 Score=98.81 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004829 558 IAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGP 637 (728)
Q Consensus 558 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 637 (728)
.+..+..+|.++...|++++|+.+|++++.+ .+....++..+|.++...|++++|+.+|++++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------- 72 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------- 72 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 3677889999999999999999999999988 3334678999999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004829 638 YHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREE 675 (728)
Q Consensus 638 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~ 675 (728)
+|....+++.+|.+|..+|++++|+.+|++++.+...
T Consensus 73 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 7888889999999999999999999999999998744
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.14 E-value=1e-11 Score=134.31 Aligned_cols=168 Identities=14% Similarity=0.098 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004829 515 EEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE 594 (728)
Q Consensus 515 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 594 (728)
+..+..+..+|.++...|++++|+.+|++++++.+.. ..++.++|.+|..+|++++|+.+|++++++
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------ 69 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIEL------ 69 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 4456677788999999999999999999999986554 678899999999999999999999999987
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--HHHcCChHHHHHHHH-----
Q 004829 595 KKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGT--YDAMGRIDDAIEILE----- 667 (728)
Q Consensus 595 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~--~~~~g~~~~A~~~~~----- 667 (728)
.+....+++++|.+|..+|++++|+.+|++++++ +|....++..++.+ +..+|++++|+..++
T Consensus 70 --~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~ 139 (477)
T 1wao_1 70 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 139 (477)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC------CCST
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 3344678999999999999999999999999998 66666688888888 888999999999999
Q ss_pred ------HHHHHHHHHcCCCChH---HHHHHHHHHHHHHHhCChhHHH
Q 004829 668 ------YVVGMREEKLGTANPD---VEDEKRRLAELLKEAGRVRNRK 705 (728)
Q Consensus 668 ------~al~~~~~~~~~~~p~---~~~~~~~La~~~~~~g~~~~A~ 705 (728)
+++.+.....++.++. ....+..+...+...+.+.++.
T Consensus 140 ~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~ 186 (477)
T 1wao_1 140 VDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKC 186 (477)
T ss_dssp TTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHH
T ss_pred HhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHH
Confidence 7766655555666664 3444555566666666655443
No 168
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.13 E-value=9.3e-10 Score=94.42 Aligned_cols=118 Identities=21% Similarity=0.362 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004829 558 IAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGP 637 (728)
Q Consensus 558 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 637 (728)
...++..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.+|++++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------- 72 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------- 72 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Confidence 3567889999999999999999999999986 2223568899999999999999999999999988
Q ss_pred CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC
Q 004829 638 YHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAG 699 (728)
Q Consensus 638 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g 699 (728)
.|....++..+|.+|...|++++|+.+|++++.+ +|....++..++.++...|
T Consensus 73 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 -DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred -CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence 6666778999999999999999999999999985 3666778889999888765
No 169
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.13 E-value=1e-10 Score=108.27 Aligned_cols=128 Identities=11% Similarity=0.108 Sum_probs=108.9
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004829 569 YYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSN 648 (728)
Q Consensus 569 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 648 (728)
+...|++++|+..+++++.. .+....++..+|.+|...|++++|+.+|++++.+ .|....++..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--------RGENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HCSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHH
Confidence 45678999999999999987 2334578999999999999999999999999998 6666778999
Q ss_pred HHHH-HHHcCCh--HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829 649 LAGT-YDAMGRI--DDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK 721 (728)
Q Consensus 649 La~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~ 721 (728)
+|.+ +...|++ ++|+.+|++++.+ +|....++..+|.+|...|++++|+ ..++.++...|....
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAI-ELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTCCTTSC
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHH-HHHHHHHhhCCCCcc
Confidence 9999 8899999 9999999999985 3667788999999999999999999 999999999887643
No 170
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.11 E-value=1.6e-09 Score=92.99 Aligned_cols=118 Identities=19% Similarity=0.302 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004829 517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK 596 (728)
Q Consensus 517 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 596 (728)
...++..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.++++++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------- 72 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------- 72 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------
Confidence 46788999999999999999999999999875433 467889999999999999999999999986
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004829 597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG 657 (728)
Q Consensus 597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g 657 (728)
.+....++..+|.++...|++++|+.+|++++.+ +|....++..++.++...|
T Consensus 73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence 2223468889999999999999999999999998 7777788899999887654
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.10 E-value=3.2e-10 Score=97.41 Aligned_cols=101 Identities=20% Similarity=0.085 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004829 603 ALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANP 682 (728)
Q Consensus 603 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p 682 (728)
.++.+|.++...|++++|+..|++++.+ +|....+++.+|.++...|++++|+..|++++++ +|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P 82 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP 82 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence 4678899999999999999999999999 8888999999999999999999999999999995 37
Q ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829 683 DVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNL 720 (728)
Q Consensus 683 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~ 720 (728)
+...++..||.+|...|++++|+ ..++.++..+|...
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 83 KDIAVHAALAVSHTNEHNANAAL-ASLRAWLLSQPQYE 119 (121)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCcCCC
Confidence 77789999999999999999999 99999999888653
No 172
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.10 E-value=3e-10 Score=118.32 Aligned_cols=130 Identities=12% Similarity=0.141 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--------CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829 561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG--------EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILE 632 (728)
Q Consensus 561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 632 (728)
.+..+|..++..|++++|+.+|++++++..... ....+....++.++|.+|..+|++++|+.+|++++++
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 456789999999999999999999999655421 0013456789999999999999999999999999998
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHH
Q 004829 633 KEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKS 706 (728)
Q Consensus 633 ~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~ 706 (728)
+|....+++.+|.+|..+|++++|+.+|++++++. |....++..|+.++..+++.+++..
T Consensus 303 ------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--------P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 ------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--------PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899999999999999999999999999963 6677889999999999999998873
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.08 E-value=5.3e-11 Score=128.67 Aligned_cols=177 Identities=15% Similarity=0.103 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 004829 393 AADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP 472 (728)
Q Consensus 393 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 472 (728)
+..+..+|.++...|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++++ +|
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p 71 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIEL------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------DK 71 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CC
Confidence 445677888999999999999999999987 5666889999999999999999999999999998 78
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHH--HHHcCCHHHHHHHHH--------
Q 004829 473 AVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAI--YQSMNELEQAVKLLN-------- 542 (728)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-------- 542 (728)
....++.++|.+|..+|++++|+.+|++++++... ...++..++.+ +..+|++++|+..++
T Consensus 72 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~---------~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 142 (477)
T 1wao_1 72 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH---------DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 142 (477)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---------CTTHHHHHHHHHHHHHHHHHCCC------CCSTTTC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhh
Confidence 88899999999999999999999999999998422 23456667777 888999999999999
Q ss_pred ---HHHHHHhcCCCCCCc----HHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHh
Q 004829 543 ---KALKIYGKTPGQQST----IAGIEAQMGVMYYMTGNYS--DSYNTLKSAISKFRTS 592 (728)
Q Consensus 543 ---~al~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~ 592 (728)
+++.+.+...+.... ....+..+...+...+.+. .+..++.++.+++...
T Consensus 143 ~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e 201 (477)
T 1wao_1 143 LDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKL 201 (477)
T ss_dssp CTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTS
T ss_pred hhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccC
Confidence 666655544333221 1223334444555555443 4455777777776653
No 174
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.08 E-value=1.6e-09 Score=107.27 Aligned_cols=264 Identities=11% Similarity=0.019 Sum_probs=168.7
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 004829 360 AHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSI 439 (728)
Q Consensus 360 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 439 (728)
-.+..|+|..++.-..+ +.+ .... .....+.+.|..+|++.... ...+. ..+...+
T Consensus 22 n~fy~G~yq~~i~e~~~---~~~----~~~~---~~~~~~~Rs~iAlg~~~~~~-------------~~~~~-~~a~~~l 77 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEK---FSK----VTDN---TLLFYKAKTLLALGQYQSQD-------------PTSKL-GKVLDLY 77 (310)
T ss_dssp HHHTTTCHHHHTHHHHT---SSC----CCCH---HHHHHHHHHHHHTTCCCCCC-------------SSSTT-HHHHHHH
T ss_pred HHHHhhHHHHHHHHHHh---cCc----cchH---HHHHHHHHHHHHcCCCccCC-------------CCCHH-HHHHHHH
Confidence 35678999888763321 111 1111 24556677888888876321 12222 2233344
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHH
Q 004829 440 GDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIAS 519 (728)
Q Consensus 440 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 519 (728)
+..+. ++ |+..+++.+.. ..+. ..++..+|.++...|++++|+.++.+++.... ......
T Consensus 78 a~~~~--~~---a~~~l~~l~~~-------~~~~-~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-------~~~~le 137 (310)
T 3mv2_B 78 VQFLD--TK---NIEELENLLKD-------KQNS-PYELYLLATAQAILGDLDKSLETCVEGIDNDE-------AEGTTE 137 (310)
T ss_dssp HHHHT--TT---CCHHHHHTTTT-------SCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-------STTHHH
T ss_pred HHHhc--cc---HHHHHHHHHhc-------CCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-------CcCcHH
Confidence 43332 22 66666665542 1122 34457899999999999999999999865421 134678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHHHHHhCCC
Q 004829 520 GLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQM--GVMYYMTG--NYSDSYNTLKSAISKFRTSGEK 595 (728)
Q Consensus 520 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~~~~~~~ 595 (728)
++..++.++..+|+.+.|.+.++++.+..++.. ...-.+...+ +++.+..| ++.+|..+|+++...+ +
T Consensus 138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~---~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~----p- 209 (310)
T 3mv2_B 138 LLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV---SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF----P- 209 (310)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH---HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS----C-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc---ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC----C-
Confidence 889999999999999999999999877644100 0001223344 44466667 9999999999976431 1
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 596 KSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY--HHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 596 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
.......+.+ ++..+|++++|...++.+++..-.....+ .|..+.++.+++.+...+|+ +|.++++++.+..
T Consensus 210 -~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 210 -TWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp -SHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred -CcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 1112233333 89999999999999997776632110000 25567788899999999998 8889999888743
Q ss_pred HHHcCCCChHHHH
Q 004829 674 EEKLGTANPDVED 686 (728)
Q Consensus 674 ~~~~~~~~p~~~~ 686 (728)
|+||...+
T Consensus 284 -----P~hp~i~d 291 (310)
T 3mv2_B 284 -----HEHAFIKH 291 (310)
T ss_dssp -----CCCHHHHH
T ss_pred -----CCChHHHH
Confidence 67776554
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.08 E-value=2.2e-09 Score=93.09 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004829 561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHH 640 (728)
Q Consensus 561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 640 (728)
.++.+|.++...|++++|+..|++++... +..+....+++.+|.++...|++++|+.+|++++.. .++++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence 45688999999999999999999998862 223334578999999999999999999999999998 23333
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 004829 641 DTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAE 693 (728)
Q Consensus 641 ~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~ 693 (728)
....+++.+|.+|..+|++++|+.+|++++... |+++....+...+..
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY-----PGSDAARVAQERLQS 121 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHH
Confidence 337899999999999999999999999999854 455555544444443
No 176
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.08 E-value=2.1e-09 Score=91.19 Aligned_cols=113 Identities=15% Similarity=0.087 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829 559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY 638 (728)
Q Consensus 559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 638 (728)
+..+..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.++++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------- 67 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------- 67 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence 456788999999999999999999999987 2223578999999999999999999999999998
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 004829 639 HHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELL 695 (728)
Q Consensus 639 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~ 695 (728)
.|....++..+|.++...|++++|+.+|++++.+ +|....++..++.+.
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME 116 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHhh
Confidence 7777789999999999999999999999999973 466666777777664
No 177
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.07 E-value=1.4e-09 Score=95.41 Aligned_cols=105 Identities=19% Similarity=0.235 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC
Q 004829 430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN 509 (728)
Q Consensus 430 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 509 (728)
+..+..+..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++++|+.++++++.+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---- 73 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD---- 73 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----
Confidence 455778999999999999999999999999998 77778899999999999999999999999999983
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829 510 HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 510 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 551 (728)
+....++..+|.++...|++++|+.+|++++.+.+..
T Consensus 74 -----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 74 -----GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -----chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence 3356789999999999999999999999999998874
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.07 E-value=5.5e-10 Score=95.91 Aligned_cols=97 Identities=14% Similarity=0.085 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004829 561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHH 640 (728)
Q Consensus 561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 640 (728)
.++.+|..+...|++++|+..|+++++. .+....+++.+|.++...|++++|+..|++++++ +|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P 82 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP 82 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence 3568899999999999999999999998 4445789999999999999999999999999999 88
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 641 DTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 641 ~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
....+++.||.+|...|++++|+.+|++++++.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888899999999999999999999999999853
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.05 E-value=1.3e-09 Score=113.39 Aligned_cols=130 Identities=16% Similarity=0.161 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc----------CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829 394 ADRRLMGLICDSKGDYEAALEHYVLASMSMAAN----------GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAF 463 (728)
Q Consensus 394 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 463 (728)
..+..+|..++..|++++|+..|++++.+.... ...+....++.++|.+|..+|++++|+.+|++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI- 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence 347789999999999999999999999865432 145677889999999999999999999999999997
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 004829 464 KSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKL 540 (728)
Q Consensus 464 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 540 (728)
.|....+++.+|.+|..+|++++|+.+|++++++. |....++..++.++...++++++...
T Consensus 303 -------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~---------P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 -------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA---------PEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999993 33456788899999988888777643
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.05 E-value=4.5e-09 Score=90.97 Aligned_cols=124 Identities=14% Similarity=0.169 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004829 517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK 596 (728)
Q Consensus 517 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 596 (728)
.+..+..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.++++++.........
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~- 74 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN-------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED- 74 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC-
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh-
Confidence 46788999999999999999999999999986543 5678899999999999999999999999986653322
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004829 597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG 657 (728)
Q Consensus 597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g 657 (728)
......++..+|.++...|++++|+.+|++++.+ .|+ ......++.++...+
T Consensus 75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--------HRT-PDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHHH
Confidence 3334778999999999999999999999999997 443 446666766665443
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.04 E-value=1.9e-09 Score=93.43 Aligned_cols=124 Identities=13% Similarity=0.116 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004829 558 IAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGP 637 (728)
Q Consensus 558 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 637 (728)
.+..+..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.+|++++.+.... ..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 73 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE 73 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence 3567889999999999999999999999987 22235789999999999999999999999999984431 11
Q ss_pred CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC
Q 004829 638 YHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAG 699 (728)
Q Consensus 638 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g 699 (728)
..+....+++.+|.+|...|++++|+.+|++++.+. | .......++.++...+
T Consensus 74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--------R-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------C-CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------C-CHHHHHHHHHHHHHHH
Confidence 222237799999999999999999999999999852 3 2445566666655443
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.03 E-value=3.6e-10 Score=116.41 Aligned_cols=145 Identities=11% Similarity=0.063 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--CC-------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 560 GIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE--KK-------SALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
..+..+|..++..|+|++|+.+|++++.+...... .. ......+++++|.+|..+|++++|+.+|++++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567899999999999999999999987321100 00 0000138899999999999999999999999998
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH-hCChhHHHHHHH
Q 004829 631 LEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE-AGRVRNRKSRSL 709 (728)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~-~g~~~~A~~~~l 709 (728)
+|....+++++|.+|..+|++++|+.+|++++.+. |....++..|+.+... .+..+++. ..+
T Consensus 260 --------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--------p~~~~a~~~L~~l~~~~~~~~~~a~-~~~ 322 (338)
T 2if4_A 260 --------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--------PDDKAIRRELRALAEQEKALYQKQK-EMY 322 (338)
T ss_dssp --------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 88888899999999999999999999999999853 7778888889988554 45566666 888
Q ss_pred HHHHhhcccccc
Q 004829 710 VTFLDSNSQNLK 721 (728)
Q Consensus 710 ~~ll~~~~~~~~ 721 (728)
..++...|....
T Consensus 323 ~~~l~~~p~~~~ 334 (338)
T 2if4_A 323 KGIFKGKDEGGA 334 (338)
T ss_dssp ------------
T ss_pred HHhhCCCCCCCC
Confidence 888888887644
No 183
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.03 E-value=1e-08 Score=101.45 Aligned_cols=254 Identities=11% Similarity=-0.005 Sum_probs=169.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004829 401 LICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVR 480 (728)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 480 (728)
.-.+..|+|..++.-..+. ....+. .....+.++|+.+|++.... ...|. ..+...
T Consensus 21 kn~fy~G~yq~~i~e~~~~------~~~~~~--~~~~~~~Rs~iAlg~~~~~~---------------~~~~~-~~a~~~ 76 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKF------SKVTDN--TLLFYKAKTLLALGQYQSQD---------------PTSKL-GKVLDL 76 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTS------SCCCCH--HHHHHHHHHHHHTTCCCCCC---------------SSSTT-HHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhc------CccchH--HHHHHHHHHHHHcCCCccCC---------------CCCHH-HHHHHH
Confidence 4566789999888743221 122222 35556677888888887421 12332 223333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHH
Q 004829 481 LADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAG 560 (728)
Q Consensus 481 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 560 (728)
++..+. ++ |+..+++.+... ... ...+..+|.++...|++++|+..+.+++...+ ......
T Consensus 77 la~~~~--~~---a~~~l~~l~~~~------~~~---~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-----~~~~le 137 (310)
T 3mv2_B 77 YVQFLD--TK---NIEELENLLKDK------QNS---PYELYLLATAQAILGDLDKSLETCVEGIDNDE-----AEGTTE 137 (310)
T ss_dssp HHHHHT--TT---CCHHHHHTTTTS------CCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-----STTHHH
T ss_pred HHHHhc--cc---HHHHHHHHHhcC------CCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-----CcCcHH
Confidence 444332 22 667777655331 112 23456899999999999999999999864321 124466
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcH----HHHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHHHH
Q 004829 561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSA----LFGIALNQM--GLACVQRY--TINEAADLFEEARTILE 632 (728)
Q Consensus 561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~~ 632 (728)
++..++.++..+|+.+.|.+.++++.+. ++ ....++..+ |++.+..| ++.+|..+|+++...
T Consensus 138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~--------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-- 207 (310)
T 3mv2_B 138 LLLLAIEVALLNNNVSTASTIFDNYTNA--------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-- 207 (310)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--
Confidence 7788999999999999999999998766 22 012334444 44466666 999999999997665
Q ss_pred HhcCCCChh--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC--CChHHHHHHHHHHHHHHHhCChhHHHHHH
Q 004829 633 KEYGPYHHD--TLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGT--ANPDVEDEKRRLAELLKEAGRVRNRKSRS 708 (728)
Q Consensus 633 ~~~~~~~~~--~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~La~~~~~~g~~~~A~~~~ 708 (728)
.|+ ....+++ ++..+|++++|...++.+++.....-.. ..|..++++.+++.+...+|+ +|. ++
T Consensus 208 ------~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~-~l 275 (310)
T 3mv2_B 208 ------FPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTE-DL 275 (310)
T ss_dssp ------SCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTH-HH
T ss_pred ------CCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHH-HH
Confidence 554 2333344 8999999999999999777653211000 026678889899999999997 777 89
Q ss_pred HHHHHhhcccc
Q 004829 709 LVTFLDSNSQN 719 (728)
Q Consensus 709 l~~ll~~~~~~ 719 (728)
++++...+|..
T Consensus 276 ~~qL~~~~P~h 286 (310)
T 3mv2_B 276 TNQLVKLDHEH 286 (310)
T ss_dssp HHHHHHTTCCC
T ss_pred HHHHHHhCCCC
Confidence 99999888764
No 184
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.02 E-value=4.1e-09 Score=89.33 Aligned_cols=114 Identities=14% Similarity=0.165 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004829 517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK 596 (728)
Q Consensus 517 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 596 (728)
.+..+..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.++++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------- 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------- 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence 35678999999999999999999999999886544 567889999999999999999999999987
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004829 597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTY 653 (728)
Q Consensus 597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~ 653 (728)
.+....++..+|.++...|++++|+.+|++++.+ .|....++..++.+.
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME 116 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHhh
Confidence 2234578999999999999999999999999988 666667777777764
No 185
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=3.3e-09 Score=94.34 Aligned_cols=119 Identities=12% Similarity=0.142 Sum_probs=99.6
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004829 557 TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG 636 (728)
Q Consensus 557 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 636 (728)
.....+..+|..+...|++++|+.+|++++.. .........++..+|.++...|++++|+.+|++++.+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------ 94 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK------ 94 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh------
Confidence 44677889999999999999999999999875 2222234788999999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Q 004829 637 PYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLK 696 (728)
Q Consensus 637 ~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~ 696 (728)
+|....+++.+|.+|..+|++++|+.+|++++.+. |....++..++.+..
T Consensus 95 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 95 --DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE--------PKNKVFQEALRNISG 144 (148)
T ss_dssp --TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------SSCHHHHHHHHHHHC
T ss_pred --CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHh
Confidence 67778899999999999999999999999999853 445555666665543
No 186
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=7e-09 Score=92.13 Aligned_cols=122 Identities=15% Similarity=0.160 Sum_probs=100.6
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhh
Q 004829 216 LGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI 295 (728)
Q Consensus 216 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 295 (728)
..+|..+..++.+|..++..| ++++|+.+|++++.. ...++....++..+|.+|...|++++|+.+|++++.+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCG-DYGGALAAYTQALGL------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHH------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 345677899999999999997 999999999999874 2122234788999999999999999999999999987
Q ss_pred hhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 004829 296 PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAH 361 (728)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 361 (728)
. +..+ .+++.+|.+|...|++++|+.+|++++.+ .|....++..++.+.
T Consensus 95 ~-----~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 95 D-----GGDV----KALYRRSQALEKLGRLDQAVLDLQRCVSL--------EPKNKVFQEALRNIS 143 (148)
T ss_dssp T-----SCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHH
T ss_pred C-----ccCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHH
Confidence 5 3333 35899999999999999999999999998 566666666666554
No 187
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.97 E-value=1.3e-08 Score=88.11 Aligned_cols=103 Identities=12% Similarity=-0.002 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC
Q 004829 223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ 302 (728)
Q Consensus 223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 302 (728)
..++.+|..++..| ++++|+..|++++.. ...++....+++.+|.++...|++++|+.+|++++... +
T Consensus 3 ~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~------~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p 70 (129)
T 2xev_A 3 RTAYNVAFDALKNG-KYDDASQLFLSFLEL------YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----P 70 (129)
T ss_dssp CCHHHHHHHHHHTT-CHHHHHHHHHHHHHH------CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T
T ss_pred HHHHHHHHHHHHhC-CHHHHHHHHHHHHHH------CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----C
Confidence 35788999999997 999999999999986 33345455788999999999999999999999999875 3
Q ss_pred chhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829 303 DHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEI 338 (728)
Q Consensus 303 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 338 (728)
.++. ...+++.+|.+|..+|++++|+.+|++++..
T Consensus 71 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 71 THDK-AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3311 2345899999999999999999999999988
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.96 E-value=4.2e-09 Score=115.81 Aligned_cols=177 Identities=8% Similarity=0.018 Sum_probs=155.0
Q ss_pred HhCC-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHHcCCCCCCC
Q 004829 445 SLAR-FDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGK----------LRDSKSYCENALKIYGKPNHGIP 513 (728)
Q Consensus 445 ~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~ 513 (728)
..|+ .++|+..+.+++.+ +|....+|+..+.++...|+ +++++.++++++..
T Consensus 40 ~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------- 102 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------- 102 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---------
Confidence 4444 46789999999999 99999999999999999998 99999999999998
Q ss_pred cHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Q 004829 514 SEEIASGLIDIAAIYQSMN--ELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTG-NYSDSYNTLKSAISKFR 590 (728)
Q Consensus 514 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~ 590 (728)
+|....+|...+.++...+ ++++|+.++.+++++.++. ..+|...+.++...| .++++++++.++++.
T Consensus 103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-- 173 (567)
T 1dce_A 103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 173 (567)
T ss_dssp CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc-------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence 4556789999999999999 7799999999999997766 678889999999999 899999999999876
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004829 591 TSGEKKSALFGIALNQMGLACVQR--------------YTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM 656 (728)
Q Consensus 591 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~ 656 (728)
++....+|+.++.++... +.+++|++++.+|+.+ +|+...+|+.++.++...
T Consensus 174 ------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 174 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp ------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCC
T ss_pred ------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcC
Confidence 334457889999888875 5689999999999999 888888999999999998
Q ss_pred CChHH
Q 004829 657 GRIDD 661 (728)
Q Consensus 657 g~~~~ 661 (728)
+++++
T Consensus 240 ~~~~~ 244 (567)
T 1dce_A 240 EPHDV 244 (567)
T ss_dssp CCCSC
T ss_pred CCccc
Confidence 88665
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.95 E-value=1.1e-09 Score=112.70 Aligned_cols=136 Identities=18% Similarity=0.192 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHH-----------------HHHHHHHHHHHHhCCHHHHHHH
Q 004829 393 AADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVA-----------------SIDCSIGDAYLSLARFDEAIFS 455 (728)
Q Consensus 393 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----------------~~~~~la~~~~~~g~~~~A~~~ 455 (728)
+..+..+|..++..|++++|+..|.+++.+. +... .++.++|.+|..+|++++|+.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~------p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM------GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS------CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh------ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3457889999999999999999999998763 2222 3889999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHH-HHHcCCH
Q 004829 456 YHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAI-YQSMNEL 534 (728)
Q Consensus 456 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~ 534 (728)
|++++.+ .|....+++++|.+|..+|++++|+.+|++++.+ .|....++..++.+ ....+..
T Consensus 253 ~~~al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l---------~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 253 CNIVLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY---------APDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHHHHHHHH
Confidence 9999998 7888899999999999999999999999999887 34456677788877 4455677
Q ss_pred HHHHHHHHHHHHHHhcC
Q 004829 535 EQAVKLLNKALKIYGKT 551 (728)
Q Consensus 535 ~~A~~~~~~al~~~~~~ 551 (728)
+++...|.+++...+..
T Consensus 316 ~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 316 QKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHHhhCCCCCC
Confidence 88888999888776654
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.94 E-value=5.3e-09 Score=114.99 Aligned_cols=178 Identities=10% Similarity=0.052 Sum_probs=155.3
Q ss_pred HHcCCh-HHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHhcCCCC
Q 004829 486 HKIGKL-RDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNE----------LEQAVKLLNKALKIYGKTPGQ 554 (728)
Q Consensus 486 ~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~ 554 (728)
...|++ ++|+..+.+++.+ .|....+|+..+.++...|+ +++|+.++.+++...++.
T Consensus 39 ~~~~~~~eeal~~~~~~l~~---------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~--- 106 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGA---------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS--- 106 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC---
T ss_pred HHcCCCCHHHHHHHHHHHHH---------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC---
Confidence 344554 5789999999999 45567889999999999988 999999999999988776
Q ss_pred CCcHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHH
Q 004829 555 QSTIAGIEAQMGVMYYMTG--NYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY-TINEAADLFEEARTIL 631 (728)
Q Consensus 555 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 631 (728)
..+|...+.++...+ ++++|+.++.+++++ ++....+|...+.++...| .++++++++.++++.
T Consensus 107 ----y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~- 173 (567)
T 1dce_A 107 ----YGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR- 173 (567)
T ss_dssp ----HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-
T ss_pred ----HHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH-
Confidence 678999999999999 779999999999998 4445678999999999999 999999999999998
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 004829 632 EKEYGPYHHDTLGVYSNLAGTYDAM--------------GRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE 697 (728)
Q Consensus 632 ~~~~~~~~~~~~~~~~~La~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~ 697 (728)
+|....+|..++.++..+ +.+++|++++.+|+.+ +|....+++.++.++..
T Consensus 174 -------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 174 -------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp -------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSC
T ss_pred -------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhc
Confidence 888889999999999885 5579999999999985 47778899999999999
Q ss_pred hCChhH
Q 004829 698 AGRVRN 703 (728)
Q Consensus 698 ~g~~~~ 703 (728)
.+++++
T Consensus 239 ~~~~~~ 244 (567)
T 1dce_A 239 AEPHDV 244 (567)
T ss_dssp CCCCSC
T ss_pred CCCccc
Confidence 998666
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.93 E-value=2.7e-09 Score=90.93 Aligned_cols=90 Identities=11% Similarity=0.096 Sum_probs=76.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004829 571 MTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLA 650 (728)
Q Consensus 571 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La 650 (728)
.+|++++|+.+|++++++ ....+....++..+|.+|...|++++|+.+|++++++ +|+...+++.+|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 468999999999999975 1113567889999999999999999999999999999 888888999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHH
Q 004829 651 GTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 651 ~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
.++..+|++++|+.+|++++...
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999865
No 192
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.91 E-value=3.9e-09 Score=88.51 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004829 601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTA 680 (728)
Q Consensus 601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 680 (728)
..++..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++++|+.+|++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------- 69 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-------- 69 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence 356788999999999999999999999998 6667779999999999999999999999999984
Q ss_pred ChH--HHHHHHHHHHHHHHh-CChhHHHHHHHHHHHhhccccc
Q 004829 681 NPD--VEDEKRRLAELLKEA-GRVRNRKSRSLVTFLDSNSQNL 720 (728)
Q Consensus 681 ~p~--~~~~~~~La~~~~~~-g~~~~A~~~~l~~ll~~~~~~~ 720 (728)
.|. ...++..+|.++... |++++|+ .+++.++...|...
T Consensus 70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~-~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 70 IEDEYNKDVWAAKADALRYIEGKEVEAE-IAEARAKLEHHHHH 111 (112)
T ss_dssp SCCTTCHHHHHHHHHHHTTCSSCSHHHH-HHHHHHGGGCCCCC
T ss_pred CcccchHHHHHHHHHHHHHHhCCHHHHH-HHHHHHhhcccCCC
Confidence 355 678899999999999 9999999 99999999888653
No 193
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.82 E-value=1.1e-08 Score=87.15 Aligned_cols=93 Identities=20% Similarity=0.301 Sum_probs=77.9
Q ss_pred HhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHH
Q 004829 445 SLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDI 524 (728)
Q Consensus 445 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 524 (728)
.+|++++|+.+|++++++ +.+.|....++..+|.+|..+|++++|+.+|++++++. |....++..+
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~l 67 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF---------PNHQALRVFY 67 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCchHHHHHH
Confidence 468999999999999985 11148889999999999999999999999999999993 3346789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829 525 AAIYQSMNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 525 a~~~~~~g~~~~A~~~~~~al~~~~~~ 551 (728)
|.++...|++++|+.+|++++...+..
T Consensus 68 ~~~~~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 68 AMVLYNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999987654
No 194
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.82 E-value=2.8e-09 Score=89.46 Aligned_cols=105 Identities=10% Similarity=0.033 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCC
Q 004829 431 DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH 510 (728)
Q Consensus 431 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 510 (728)
....++..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++++|+.++++++.+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--- 72 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED--- 72 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC---
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc---
Confidence 33456778889999999999999999999887 5666778889999999999999999999999887321
Q ss_pred CCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhc
Q 004829 511 GIPSEEIASGLIDIAAIYQSM-NELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 511 ~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~ 550 (728)
.....++..+|.++... |++++|+.++++++...+.
T Consensus 73 ----~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 73 ----EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp ----TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred ----cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 01356788899999999 9999999999988766443
No 195
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.77 E-value=5.3e-06 Score=89.60 Aligned_cols=383 Identities=10% Similarity=0.016 Sum_probs=212.9
Q ss_pred CCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-ChhHHHHHHHHhhhh
Q 004829 217 GNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLG-QYNEAIPVLERSVEI 295 (728)
Q Consensus 217 ~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 295 (728)
.+-..+...+..+...+-.| +++.+...|++++.. .|+.+ .|..........+ ..+.....|+.++..
T Consensus 9 ~~i~~aR~vyer~l~~~P~~-~~e~~~~iferal~~-------~ps~~---LW~~Y~~f~~~~~~~~~~i~~~fe~al~~ 77 (493)
T 2uy1_A 9 VELSSPSAIMEHARRLYMSK-DYRSLESLFGRCLKK-------SYNLD---LWMLYIEYVRKVSQKKFKLYEVYEFTLGQ 77 (493)
T ss_dssp ---CCHHHHHHHHHHHHHTT-CHHHHHHHHHHHSTT-------CCCHH---HHHHHHHHHHHHC----CTHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHhcc-------CCCHH---HHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 34567778888888888876 899999999999873 23333 3433344334444 345567788888865
Q ss_pred hhhhcCCchhHhHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHH
Q 004829 296 PVLEDGQDHALAKFAGCMQLGDTYA----MLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAE 371 (728)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 371 (728)
.. ...... .+|......+. ..++.+.+...|++++.. + .......|......- .......+.
T Consensus 78 vg--~d~~s~----~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~------P-~~~~~~lw~~Y~~fE-~~~~~~~~~ 143 (493)
T 2uy1_A 78 FE--NYWDSY----GLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT------P-MGSLSELWKDFENFE-LELNKITGK 143 (493)
T ss_dssp ST--TCTTCH----HHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS------C-CTTHHHHHHHHHHHH-HHHCHHHHH
T ss_pred cC--CCcccH----HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC------h-hhhHHHHHHHHHHHH-HHhccccHH
Confidence 31 011111 23544444432 346788889999999874 1 112222222222111 111122222
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCC---
Q 004829 372 KICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLAR--- 448 (728)
Q Consensus 372 ~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--- 448 (728)
..+.... ..+..|...|..+....... . ...|..... +..++
T Consensus 144 ~~~~~~~----------------------------~~y~~ar~~y~~~~~~~~~~--s---~~~W~~y~~--~E~~~~~~ 188 (493)
T 2uy1_A 144 KIVGDTL----------------------------PIFQSSFQRYQQIQPLIRGW--S---VKNAARLID--LEMENGMK 188 (493)
T ss_dssp HHHHHHH----------------------------HHHHHHHHHHHHHHHHHHTC--S---HHHHHHHHH--HHHTCTTC
T ss_pred HHHHHHh----------------------------HHHHHHHHHHHHHHHHHhhc--c---HHHHHHHHH--HHhcCCcc
Confidence 2211111 12333444444443332210 1 122322222 22222
Q ss_pred ------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHH
Q 004829 449 ------FDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLI 522 (728)
Q Consensus 449 ------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 522 (728)
.......|++++.. .|.....+...+..+...|+.++|...|++|+.. ... . ..+.
T Consensus 189 ~~~~~~~~Rv~~~ye~al~~--------~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~-----~----~l~~ 250 (493)
T 2uy1_A 189 LGGRPHESRMHFIHNYILDS--------FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG-----M----FLSL 250 (493)
T ss_dssp CCHHHHHHHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS-----S----HHHH
T ss_pred CcchhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc-----H----HHHH
Confidence 34567788888887 5666788999999999999999999999999998 331 1 1222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcCC---C---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004829 523 DIAAIYQSMNELEQAVKLLNKALKIYGKTP---G---QQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK 596 (728)
Q Consensus 523 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 596 (728)
..+.. ...+ +. ++...+...... + .......++...+....+.++.+.|...|.+| .. .. .
T Consensus 251 ~y~~~-~e~~---~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~----~~-~ 317 (493)
T 2uy1_A 251 YYGLV-MDEE---AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN----EG-V 317 (493)
T ss_dssp HHHHH-TTCT---HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT----SC-C
T ss_pred HHHhh-cchh---HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC----CC-C
Confidence 22221 1111 11 222222110000 0 01122355667777777788899999999988 21 11 1
Q ss_pred cHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004829 597 SALFGIALNQMGLACVQRY-TINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREE 675 (728)
Q Consensus 597 ~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~ 675 (728)
. ..++...|.+....+ +++.|...|+.+++. .|+....+...+......|+.+.|..+|+++.
T Consensus 318 ~---~~v~i~~A~lE~~~~~d~~~ar~ife~al~~--------~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----- 381 (493)
T 2uy1_A 318 G---PHVFIYCAFIEYYATGSRATPYNIFSSGLLK--------HPDSTLLKEEFFLFLLRIGDEENARALFKRLE----- 381 (493)
T ss_dssp C---HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----
T ss_pred C---hHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----
Confidence 1 235555566655555 699999999999987 23333345556777788999999999999872
Q ss_pred HcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHh
Q 004829 676 KLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLD 714 (728)
Q Consensus 676 ~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~ 714 (728)
. ....+......-...|+.+.+. ..++..+.
T Consensus 382 ----k---~~~lw~~~~~fE~~~G~~~~~r-~v~~~~~~ 412 (493)
T 2uy1_A 382 ----K---TSRMWDSMIEYEFMVGSMELFR-ELVDQKMD 412 (493)
T ss_dssp ----C---BHHHHHHHHHHHHHHSCHHHHH-HHHHHHHH
T ss_pred ----H---HHHHHHHHHHHHHHCCCHHHHH-HHHHHHHH
Confidence 1 2344555566667778888877 55555543
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.76 E-value=1.4e-08 Score=89.32 Aligned_cols=91 Identities=14% Similarity=0.226 Sum_probs=81.6
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHHcCCCCCCC
Q 004829 444 LSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKL----------RDSKSYCENALKIYGKPNHGIP 513 (728)
Q Consensus 444 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~ 513 (728)
.+.+.|++|+..+++++++ .|..+.+++++|.++..++++ ++|+..|++++++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------- 75 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------- 75 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---------
Confidence 4567899999999999999 999999999999999999876 5999999999999
Q ss_pred cHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHhcC
Q 004829 514 SEEIASGLIDIAAIYQSMN-----------ELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 514 ~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~ 551 (728)
.|....+|+++|.+|..+| ++++|+.+|++|+++.++.
T Consensus 76 dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 76 DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 4557889999999999885 8999999999999997754
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.75 E-value=8.5e-09 Score=90.69 Aligned_cols=88 Identities=16% Similarity=0.123 Sum_probs=78.1
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhcCCCC
Q 004829 570 YMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTI----------NEAADLFEEARTILEKEYGPYH 639 (728)
Q Consensus 570 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~ 639 (728)
.+.+.|++|+..+++++++ .+..+.+++++|.++...+++ ++|+..|++|+++ +
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------d 76 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------D 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------C
Confidence 3557789999999999998 555678999999999998875 5999999999999 9
Q ss_pred hhHHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHHH
Q 004829 640 HDTLGVYSNLAGTYDAMG-----------RIDDAIEILEYVVGMR 673 (728)
Q Consensus 640 ~~~~~~~~~La~~~~~~g-----------~~~~A~~~~~~al~~~ 673 (728)
|+...+++++|.+|..+| ++++|+.+|++|+++.
T Consensus 77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 999999999999999885 8999999999999964
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.70 E-value=3.9e-08 Score=82.42 Aligned_cols=89 Identities=17% Similarity=0.105 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004829 601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTA 680 (728)
Q Consensus 601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 680 (728)
+..+..+|.++...|++++|+..|++++.+ .|....++.++|.+|..+|++++|+.+|++++.+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-------- 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 467889999999999999999999999998 7777889999999999999999999999999984
Q ss_pred ChHH------HHHHHHHHHHHHHhCChhHHH
Q 004829 681 NPDV------EDEKRRLAELLKEAGRVRNRK 705 (728)
Q Consensus 681 ~p~~------~~~~~~La~~~~~~g~~~~A~ 705 (728)
+|.. ..++..++.++..+|+++.|+
T Consensus 68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhHhhhH
Confidence 3444 788999999999999999988
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.69 E-value=9.3e-08 Score=76.70 Aligned_cols=85 Identities=21% Similarity=0.351 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004829 599 LFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLG 678 (728)
Q Consensus 599 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~ 678 (728)
....++..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++++|+.+|++++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------ 72 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------ 72 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence 35678999999999999999999999999998 7777789999999999999999999999999985
Q ss_pred CCChHHHHHHHHHHHHHHHhC
Q 004829 679 TANPDVEDEKRRLAELLKEAG 699 (728)
Q Consensus 679 ~~~p~~~~~~~~La~~~~~~g 699 (728)
+|....++..++.++..+|
T Consensus 73 --~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 --DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp --CTTCHHHHHHHHHHHHHHC
T ss_pred --CCCCHHHHHHHHHHHHhcC
Confidence 3667788999999998765
No 200
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.65 E-value=9.5e-06 Score=87.58 Aligned_cols=340 Identities=10% Similarity=-0.008 Sum_probs=180.8
Q ss_pred cC-ChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 004829 279 LG-QYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYV 357 (728)
Q Consensus 279 ~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 357 (728)
.| +++.|...|++++...+. |+++.+..+|++++.. .| ....|...
T Consensus 7 ~~~~i~~aR~vyer~l~~~P~------------------------~~~e~~~~iferal~~--------~p-s~~LW~~Y 53 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYMS------------------------KDYRSLESLFGRCLKK--------SY-NLDLWMLY 53 (493)
T ss_dssp -----CCHHHHHHHHHHHHHT------------------------TCHHHHHHHHHHHSTT--------CC-CHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHCCC------------------------CCHHHHHHHHHHHhcc--------CC-CHHHHHHH
Confidence 35 366677777776665410 6677777777777764 33 22344444
Q ss_pred HHHHHHhCC-HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHhcCCChhH
Q 004829 358 AEAHVQSLQ-FDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICD----SKGDYEAALEHYVLASMSMAANGHELDV 432 (728)
Q Consensus 358 a~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~ 432 (728)
.......+. .+.....|+.++....... ... .+|......+. ..++.+.+...|++|+.. +. ...
T Consensus 54 ~~f~~~~~~~~~~i~~~fe~al~~vg~d~--~s~---~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~----P~-~~~ 123 (493)
T 2uy1_A 54 IEYVRKVSQKKFKLYEVYEFTLGQFENYW--DSY---GLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT----PM-GSL 123 (493)
T ss_dssp HHHHHHHC----CTHHHHHHHHHHSTTCT--TCH---HHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS----CC-TTH
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHcCCCc--ccH---HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC----hh-hhH
Confidence 444444442 3445556666665432111 111 23333333222 235567777788877642 10 111
Q ss_pred HHHHHHHHHH-------------HHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC---------
Q 004829 433 ASIDCSIGDA-------------YLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGK--------- 490 (728)
Q Consensus 433 ~~~~~~la~~-------------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------- 490 (728)
...|...... -.....+..|...|+.+....... .. ..+...... ..++
T Consensus 124 ~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~----s~---~~W~~y~~~--E~~~~~~~~~~~~ 194 (493)
T 2uy1_A 124 SELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW----SV---KNAARLIDL--EMENGMKLGGRPH 194 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----SH---HHHHHHHHH--HHTCTTCCCHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc----cH---HHHHHHHHH--HhcCCccCcchhh
Confidence 1111111111 111233444555555554443221 11 123222222 2222
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHH
Q 004829 491 LRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYY 570 (728)
Q Consensus 491 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~ 570 (728)
.......|++++.... ....+|...+..+...|+.+.|...|++|+.. +... .++...+..
T Consensus 195 ~~Rv~~~ye~al~~~p---------~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~-------~l~~~y~~~-- 255 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFY---------YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM-------FLSLYYGLV-- 255 (493)
T ss_dssp HHHHHHHHHHHHHHTT---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS-------HHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH-------HHHHHHHhh--
Confidence 3456778999998742 23677888899999999999999999999998 5431 112111211
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhC-----CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004829 571 MTGNYSDSYNTLKSAISKFRTSG-----EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGV 645 (728)
Q Consensus 571 ~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 645 (728)
.+.++. ++.....+.... .........++...+..+...++.+.|...|++| .. + +....+
T Consensus 256 --~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~------~--~~~~~v 321 (493)
T 2uy1_A 256 --MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN------E--GVGPHV 321 (493)
T ss_dssp --TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT------S--CCCHHH
T ss_pred --cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC------C--CCChHH
Confidence 111121 222222110000 0012223466777778877888899999999998 32 1 112335
Q ss_pred HHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 004829 646 YSNLAGTYDAMG-RIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTF 712 (728)
Q Consensus 646 ~~~La~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~l 712 (728)
+...|.+....+ +.+.|...|+.+++.+ ++.|+ .+...+......|+.+.|. ..++.+
T Consensus 322 ~i~~A~lE~~~~~d~~~ar~ife~al~~~-----~~~~~---~~~~yid~e~~~~~~~~aR-~l~er~ 380 (493)
T 2uy1_A 322 FIYCAFIEYYATGSRATPYNIFSSGLLKH-----PDSTL---LKEEFFLFLLRIGDEENAR-ALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHC-----TTCHH---HHHHHHHHHHHHTCHHHHH-HHHHHS
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHC-----CCCHH---HHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence 555666666555 6999999999999843 33443 4455677788899999888 655554
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.65 E-value=1.1e-08 Score=85.79 Aligned_cols=94 Identities=10% Similarity=0.127 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829 559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY 638 (728)
Q Consensus 559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 638 (728)
+..+..+|.++...|++++|+.+|++++.+ .+....++.++|.++...|++++|+..|++++.+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-------- 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 457789999999999999999999999987 3334678999999999999999999999999988
Q ss_pred ChhH------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 004829 639 HHDT------LGVYSNLAGTYDAMGRIDDAIEILEY 668 (728)
Q Consensus 639 ~~~~------~~~~~~La~~~~~~g~~~~A~~~~~~ 668 (728)
.|.. ..+++.+|.++..+|+++.|+..+++
T Consensus 68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 5554 77899999999999988887765543
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.63 E-value=3.2e-07 Score=77.49 Aligned_cols=87 Identities=16% Similarity=0.162 Sum_probs=76.7
Q ss_pred hHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Q 004829 283 NEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHV 362 (728)
Q Consensus 283 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 362 (728)
++|+..|++++... +..+ .+++.+|.+|...|++++|+.+|++++.+ .|....++..+|.+|.
T Consensus 2 ~~a~~~~~~al~~~-----p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~ 64 (115)
T 2kat_A 2 QAITERLEAMLAQG-----TDNM----LLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQ 64 (115)
T ss_dssp CCHHHHHHHHHTTT-----CCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-----CCcH----HHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHH
Confidence 46888999998865 4443 35999999999999999999999999998 7888889999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHHcCC
Q 004829 363 QSLQFDEAEKICQMALDIHRENTS 386 (728)
Q Consensus 363 ~~g~~~~A~~~~~~al~~~~~~~~ 386 (728)
..|++++|+..|++++.+.+....
T Consensus 65 ~~g~~~~A~~~~~~al~~~~~~~~ 88 (115)
T 2kat_A 65 GQGDRAGARQAWESGLAAAQSRGD 88 (115)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999887653
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.63 E-value=9.3e-08 Score=80.88 Aligned_cols=82 Identities=11% Similarity=0.047 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004829 577 DSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM 656 (728)
Q Consensus 577 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~ 656 (728)
+|+..|+++++. .+....+++.+|.++...|++++|+.+|++++.+ +|....+++.+|.+|..+
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHc
Confidence 567778888765 2233578999999999999999999999999998 788888999999999999
Q ss_pred CChHHHHHHHHHHHHHHH
Q 004829 657 GRIDDAIEILEYVVGMRE 674 (728)
Q Consensus 657 g~~~~A~~~~~~al~~~~ 674 (728)
|++++|+.+|++++.+..
T Consensus 67 g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 67 GDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 999999999999999763
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.61 E-value=2.4e-07 Score=74.18 Aligned_cols=86 Identities=27% Similarity=0.375 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC
Q 004829 430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN 509 (728)
Q Consensus 430 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 509 (728)
+....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++.+.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---- 73 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---- 73 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----
Confidence 455678888899999999999999999999887 66667788889999999999999999999998882
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcC
Q 004829 510 HGIPSEEIASGLIDIAAIYQSMN 532 (728)
Q Consensus 510 ~~~~~~~~~~~~~~la~~~~~~g 532 (728)
|....++..+|.++...|
T Consensus 74 -----p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 74 -----PNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp -----TTCHHHHHHHHHHHHHHC
T ss_pred -----CCCHHHHHHHHHHHHhcC
Confidence 334567778888776654
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.53 E-value=6e-07 Score=78.70 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 004829 532 NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLAC 611 (728)
Q Consensus 532 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 611 (728)
+++++|+.+|+++.+.- ... .. +|.+|...+.+++|+.+|+++.+. ..+.++++||.+|
T Consensus 9 ~d~~~A~~~~~~aa~~g-----~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y 67 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-----EMF----GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDFY 67 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-----CTT----HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-----CHh----hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHHH
Confidence 47899999999998652 221 22 899999999999999999999875 1257899999999
Q ss_pred HH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 004829 612 VQ----RYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA----MGRIDDAIEILEYVVGM 672 (728)
Q Consensus 612 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~----~g~~~~A~~~~~~al~~ 672 (728)
.. .+++++|+.+|+++.+. ....++++||.+|.. .+++++|+.+|+++.+.
T Consensus 68 ~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 68 ENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 98 89999999999999875 234588999999999 99999999999999983
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.53 E-value=3.5e-07 Score=75.11 Aligned_cols=87 Identities=21% Similarity=0.283 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004829 600 FGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGT 679 (728)
Q Consensus 600 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 679 (728)
...+++.+|.+|...|++++|+.+|++++++ +|....+++.+|.+|..+|++++|+.+|++++.+....
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~--- 74 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE--- 74 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC---
Confidence 3578999999999999999999999999999 88888899999999999999999999999999986432
Q ss_pred CChHHHHHHHHHHHHHHHhCC
Q 004829 680 ANPDVEDEKRRLAELLKEAGR 700 (728)
Q Consensus 680 ~~p~~~~~~~~La~~~~~~g~ 700 (728)
........+..++...+.
T Consensus 75 ---~~~~~~~~l~~~l~~~~~ 92 (100)
T 3ma5_A 75 ---GTQKDLSELQDAKLKAEG 92 (100)
T ss_dssp ---SCHHHHHHHHHHHHHHHT
T ss_pred ---CchhHHHHHHHHHHHccc
Confidence 112344455555554443
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.43 E-value=1.1e-06 Score=77.01 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=91.9
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHH
Q 004829 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGD 317 (728)
Q Consensus 238 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~ 317 (728)
++++|+.+|+++... +. +. +. +|.+|...+.+++|+.+|+++.+.. + ..+++.||.
T Consensus 10 d~~~A~~~~~~aa~~------g~--~~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~g-------~----~~a~~~Lg~ 65 (138)
T 1klx_A 10 DLKKAIQYYVKACEL------NE--MF---GC--LSLVSNSQINKQKLFQYLSKACELN-------S----GNGCRFLGD 65 (138)
T ss_dssp HHHHHHHHHHHHHHT------TC--TT---HH--HHHHTCTTSCHHHHHHHHHHHHHTT-------C----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHcC------CC--Hh---hh--HHHHHHcCCCHHHHHHHHHHHHcCC-------C----HHHHHHHHH
Confidence 789999999999864 22 22 23 8999999999999999999998752 2 235999999
Q ss_pred HHHH----hCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q 004829 318 TYAM----LGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ----SLQFDEAEKICQMALDI 380 (728)
Q Consensus 318 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 380 (728)
+|.. .+++++|+.+|+++.+. ....+++.||.+|.. .+++++|+.+|+++.+.
T Consensus 66 ~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 66 FYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9999 89999999999999865 345789999999999 89999999999999865
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.42 E-value=1.6e-06 Score=71.07 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q 004829 310 AGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTS 386 (728)
Q Consensus 310 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 386 (728)
.+++.+|.+|...|++++|+.+|++++++ +|....++..+|.+|...|++++|+..|++++.+.+...+
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 35999999999999999999999999999 7888889999999999999999999999999999887654
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.33 E-value=7.1e-07 Score=72.89 Aligned_cols=92 Identities=13% Similarity=0.107 Sum_probs=73.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH
Q 004829 605 NQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLG-VYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPD 683 (728)
Q Consensus 605 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~ 683 (728)
+.+|.++...|++++|+..|+++++. +|.... +++.+|.+|..+|++++|+.+|++++.+. |.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~ 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN--------PD 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CC
Confidence 46788999999999999999999998 788888 99999999999999999999999999853 44
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829 684 VEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK 721 (728)
Q Consensus 684 ~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~ 721 (728)
...++.. +.+.++. ..++.++..+|....
T Consensus 68 ~~~~~~~--------~~~~~a~-~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 68 SPALQAR--------KMVMDIL-NFYNKDMYNQLEHHH 96 (99)
T ss_dssp STHHHHH--------HHHHHHH-HHHCCTTHHHHCCSS
T ss_pred cHHHHHH--------HHHHHHH-HHHHHHhccCccccc
Confidence 4444422 4566666 666666666665543
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.30 E-value=1.6e-06 Score=70.67 Aligned_cols=90 Identities=10% Similarity=0.168 Sum_probs=73.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcH
Q 004829 437 CSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVAS-VFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSE 515 (728)
Q Consensus 437 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 515 (728)
+.+|.++...|++++|+..|+++++. .|.... ++..+|.+|...|++++|+.+|++++.+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------- 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-------- 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------
Confidence 56788999999999999999999998 777777 9999999999999999999999999998422
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829 516 EIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 516 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 551 (728)
...++.. +.+.+++.+|+++....+..
T Consensus 68 -~~~~~~~--------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 68 -SPALQAR--------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp -STHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred -cHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence 2222211 56778888888887777655
No 211
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.24 E-value=0.00023 Score=73.01 Aligned_cols=211 Identities=13% Similarity=0.103 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 004829 395 DRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLS-LARFDEAIFSYHKALTAFKSAKGENHPA 473 (728)
Q Consensus 395 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~ 473 (728)
+...||.+|...|++++-.+++......+.... ....+.....+-..+.. -+..+.-++.+..+++.+... ...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~r~ 95 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSIS-KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE----KRT 95 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----TCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----HHH
Confidence 467899999999999999888876543332211 12223334444444433 355566677777777766643 333
Q ss_pred HHH--HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829 474 VAS--VFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 474 ~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 551 (728)
... .-..||.+|+..|+|.+|...+.+.++...+.. +......++.....+|...+++.++..+|.+|.......
T Consensus 96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d---d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai 172 (394)
T 3txn_A 96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLD---DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI 172 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS---CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc---cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC
Confidence 333 445899999999999999999999999887743 457788899999999999999999999999999988766
Q ss_pred CCCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCC
Q 004829 552 PGQQSTIAGIEAQMGVMYY-MTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYT 616 (728)
Q Consensus 552 ~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 616 (728)
+.++...+.+...-|.++. ..++|.+|..+|-++..-+...+ .+....++..++.+-+..++
T Consensus 173 ~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~---~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 173 YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD---SVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc---cHHHHHHHHHHHHHHHHcCC
Confidence 4444466677777888999 89999999999999976655333 23333445555666665555
No 212
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.15 E-value=0.00041 Score=71.12 Aligned_cols=215 Identities=13% Similarity=0.061 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHcCCCCCC
Q 004829 434 SIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK-IGKLRDSKSYCENALKIYGKPNHGI 512 (728)
Q Consensus 434 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 512 (728)
.+...||.+|...|++++-.+++......+... .....+.....+-..+.. -+..+.-++.+..+++......
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--- 93 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEK--- 93 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH---
Confidence 466889999999999999988887776554332 123344444455444443 3455666777777777665411
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829 513 PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS 592 (728)
Q Consensus 513 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 592 (728)
...-....-..+|.+|+..|+|.+|...+.+.++-.... ++...+..++.....+|..++++.++..++.+|.......
T Consensus 94 r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai 172 (394)
T 3txn_A 94 RTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL-DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI 172 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC
Confidence 111122234589999999999999999999999988775 4556777888889999999999999999999999887665
Q ss_pred CCCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh
Q 004829 593 GEKKSALFGIALNQMGLACV-QRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRI 659 (728)
Q Consensus 593 ~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~ 659 (728)
. .++...+.....-|..++ ..++|..|..+|-++..-+... ..|....++..++.+-...++.
T Consensus 173 ~-~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 173 Y-CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp C-CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTCG
T ss_pred C-CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCCH
Confidence 3 335556777888899999 8999999999999987655432 2454455555566666666653
No 213
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.07 E-value=4.3e-05 Score=62.83 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 004829 394 ADRRLMGLICDSKGDYEAALEHYVLASMSMAANG-HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP 472 (728)
Q Consensus 394 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 472 (728)
...+.+|..++..|+|..|+.+|++|+....... .......++..+|.++..+|+++.|+.++++++.+ .|
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~P 77 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------DP 77 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CC
Confidence 3477899999999999999999999998875443 23467789999999999999999999999999998 77
Q ss_pred HHHHHHHHHH
Q 004829 473 AVASVFVRLA 482 (728)
Q Consensus 473 ~~~~~~~~la 482 (728)
....++.+++
T Consensus 78 ~~~~~~~n~~ 87 (104)
T 2v5f_A 78 EHQRANGNLK 87 (104)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHhhHH
Confidence 7666666665
No 214
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.06 E-value=4.6e-05 Score=62.64 Aligned_cols=71 Identities=8% Similarity=0.103 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 518 ASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK 588 (728)
Q Consensus 518 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 588 (728)
+.-++.+|..++..++|..|+..|++|++..............++..+|.+++++|++++|+.++++++.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34578999999999999999999999999887553334567788999999999999999999999999987
No 215
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.01 E-value=0.00028 Score=68.04 Aligned_cols=107 Identities=17% Similarity=0.201 Sum_probs=84.4
Q ss_pred ChhHHHHHHHHHHHHHH---h--C------CHHHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHc-----CC
Q 004829 429 ELDVASIDCSIGDAYLS---L--A------RFDEAIFSYHKALTAFKSAKGENHPA--VASVFVRLADLYHKI-----GK 490 (728)
Q Consensus 429 ~~~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~ 490 (728)
.+..+..+++.|.+... . | ....|...+++++++ +|. ...++..||.+|... |+
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCC
Confidence 35556666666666543 1 2 356888889999998 666 667999999999995 99
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcC
Q 004829 491 LRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS-MNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 491 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~ 551 (728)
.++|..+|++++++... .....++..|..++. .|++++|..++++++..-+..
T Consensus 220 ~ekA~~~ferAL~LnP~--------~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 220 MEKAHTAFEHLTRYCSA--------HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHHCCT--------TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHHHhCCC--------CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999999999422 125678888999888 599999999999999986664
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.01 E-value=0.00013 Score=73.46 Aligned_cols=134 Identities=9% Similarity=-0.035 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHc
Q 004829 312 CMQLGDTYAMLG---QIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQF----DEAEKICQMALDIHREN 384 (728)
Q Consensus 312 ~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~A~~~~~~al~~~~~~ 384 (728)
++..|..+...+ .+.+|+.+|++++++ +|..+.++..++.+|.....+ ......+..++......
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 444455555544 458999999999999 899988888888887632211 12222233333322111
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829 385 TSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTA 462 (728)
Q Consensus 385 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 462 (728)
. .....+.++..++..+...|++++|+.++++|+.+- +. ..++..+|.++...|++++|++.|.+|+.+
T Consensus 271 ~--~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln------~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 271 P--ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE------MS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp G--GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred c--cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 1 111224567788888888999999999999999871 22 467789999999999999999999999999
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.96 E-value=0.00017 Score=72.56 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=87.9
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 004829 490 KLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNE----LEQAVKLLNKALKIYGKTPGQQSTIAGIEAQM 565 (728)
Q Consensus 490 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 565 (728)
.+.+|+.+|++|+++ .|..+.++..++.+|..... .......+..++...... ...+..+.++..+
T Consensus 214 ~~~~A~~l~e~Al~l---------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~-~~~~~~a~~~~al 283 (372)
T 3ly7_A 214 SLNRASELLGEIVQS---------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL-PELNNLSIIYQIK 283 (372)
T ss_dssp HHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC-GGGTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc-ccCCcCHHHHHHH
Confidence 357999999999999 45566677766666653211 112223333444432222 2223446677888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 566 GVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 566 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
+..+...|++++|+..+++|+.+ .+ ...++..+|.++...|++++|++.|.+|+.+
T Consensus 284 al~~l~~gd~d~A~~~l~rAl~L--------n~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 284 AVSALVKGKTDESYQAINTGIDL--------EM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--------CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhc--------CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888899999999999999998 12 1457788999999999999999999999999
No 218
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.88 E-value=0.00072 Score=72.83 Aligned_cols=168 Identities=15% Similarity=0.144 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHH
Q 004829 520 GLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGN---------YSDSYNTLKSAISKFR 590 (728)
Q Consensus 520 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~~ 590 (728)
.+..+-..+.+.|+.++|+.+|++..+. |..+. ..+|+.+-.++...+. .++|...|++....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-----Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-- 99 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN-----GVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-- 99 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH-----TCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh--
Confidence 3555667889999999999999998764 33332 2355556566655443 56777777765432
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004829 591 TSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVV 670 (728)
Q Consensus 591 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al 670 (728)
+-. + ...+|..+...|.+.|++++|..+|++.... + -.|+ ..+|..|-..|.+.|+.++|.++|++..
T Consensus 100 --G~~-P--d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g-~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 100 --KVV-P--NEATFTNGARLAVAKDDPEMAFDMVKQMKAF-----G-IQPR-LRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp --TCC-C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T-CCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --CCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCc-cceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 222 1 2467888999999999999999999987653 1 1344 4478889999999999999999999887
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhh
Q 004829 671 GMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDS 715 (728)
Q Consensus 671 ~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~ 715 (728)
+. | -.|+ ...+..|...|.+.|++++|. +.++.+.+.
T Consensus 168 ~~-----G-~~Pd-~~ty~~Li~~~~~~g~~d~A~-~ll~~Mr~~ 204 (501)
T 4g26_A 168 ES-----E-VVPE-EPELAALLKVSMDTKNADKVY-KTLQRLRDL 204 (501)
T ss_dssp HT-----T-CCCC-HHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred hc-----C-CCCC-HHHHHHHHHHHhhCCCHHHHH-HHHHHHHHh
Confidence 62 1 2344 456888899999999999999 888887653
No 219
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.85 E-value=0.001 Score=71.73 Aligned_cols=168 Identities=7% Similarity=-0.010 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHH
Q 004829 477 VFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMN---------ELEQAVKLLNKALKI 547 (728)
Q Consensus 477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~ 547 (728)
.+..+-..+.+.|++++|+.+|++....--. | ...+|..+-.++...+ ..+.|..+|++....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~-------p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~ 99 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQ-------L-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD 99 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCC-------C-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-------C-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh
Confidence 3455567888999999999999998876322 1 2345555656665443 467888888876542
Q ss_pred HhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829 548 YGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEA 627 (728)
Q Consensus 548 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 627 (728)
+..+. ..+|..+...|.+.|++++|..+|++.... +-. + ...+|..+-..|.+.|+.++|..+|++.
T Consensus 100 -----G~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----g~~-P--d~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 100 -----KVVPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAF----GIQ-P--RLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp -----TCCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCC-C--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-C--ccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 33332 357788999999999999999999887642 221 1 2467888889999999999999999987
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 628 RTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM 672 (728)
Q Consensus 628 l~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~ 672 (728)
.+. .-.|+ ..+|..|..+|.+.|+.++|.++|++..+.
T Consensus 167 ~~~------G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 167 VES------EVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHT------TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hhc------CCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 653 12344 347888999999999999999999987653
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.82 E-value=6.8e-05 Score=72.24 Aligned_cols=103 Identities=18% Similarity=0.141 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHc-----CChHH
Q 004829 600 FGIALNQMGLACVQ---R--Y------TINEAADLFEEARTILEKEYGPYHHD--TLGVYSNLAGTYDAM-----GRIDD 661 (728)
Q Consensus 600 ~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~La~~~~~~-----g~~~~ 661 (728)
.+..+++.|.++.. . | ....|...+++++++ +|. ...++..||.+|... |+.++
T Consensus 151 dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ek 222 (301)
T 3u64_A 151 DVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEK 222 (301)
T ss_dssp GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHH
T ss_pred ccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHH
Confidence 34556666655432 1 2 367899999999999 888 455999999999996 99999
Q ss_pred HHHHHHHHHHHHHHHcCCCChHH-HHHHHHHHHHHHH-hCChhHHHHHHHHHHHhhcccc
Q 004829 662 AIEILEYVVGMREEKLGTANPDV-EDEKRRLAELLKE-AGRVRNRKSRSLVTFLDSNSQN 719 (728)
Q Consensus 662 A~~~~~~al~~~~~~~~~~~p~~-~~~~~~La~~~~~-~g~~~~A~~~~l~~ll~~~~~~ 719 (728)
|..+|++++++. |.. ...++..|..+.. +|++++|. +.++.++..+|..
T Consensus 223 A~~~ferAL~Ln--------P~~~id~~v~YA~~l~~~~gd~~~a~-~~L~kAL~a~p~~ 273 (301)
T 3u64_A 223 AHTAFEHLTRYC--------SAHDPDHHITYADALCIPLNNRAGFD-EALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHC--------CTTCSHHHHHHHHHTTTTTTCHHHHH-HHHHHHHHCCGGG
T ss_pred HHHHHHHHHHhC--------CCCCchHHHHHHHHHHHhcCCHHHHH-HHHHHHHcCCCCC
Confidence 999999999964 654 7888899999988 49999999 9999999988874
No 221
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.012 Score=62.06 Aligned_cols=218 Identities=12% Similarity=0.033 Sum_probs=143.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 004829 407 GDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYH 486 (728)
Q Consensus 407 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 486 (728)
|++..|++.+.......+...+......+...+..++...++++...+++.-... ..| ..+...........-|.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk----kr~-qlk~ai~~~V~~~~~~l 104 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK----KHG-QLKLSIQYMIQKVMEYL 104 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT----TTT-TSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----Hhh-hhHHHHHHHHHHHHHHH
Confidence 5677888777555555555667777788888899999999999887776543221 111 12222222333332232
Q ss_pred -HcCChHHHHHHHHHHHHHHcCCCCCC--CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 004829 487 -KIGKLRDSKSYCENALKIYGKPNHGI--PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEA 563 (728)
Q Consensus 487 -~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 563 (728)
.....+. ......+........+. -....+.....|+.+|...|++.+|...+.....-.... ........++.
T Consensus 105 ~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~-~~~~~kve~~l 181 (445)
T 4b4t_P 105 KSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS-MEMSEKIQFIL 181 (445)
T ss_dssp HHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS-SCHHHHHHHHH
T ss_pred hcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 2222222 22223333332222121 123467778889999999999999999998876443322 23345667778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 564 QMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK 633 (728)
Q Consensus 564 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 633 (728)
....+|...+++.+|..++.++......... .+......+..+|.++...++|.+|..+|.++......
T Consensus 182 ~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~-~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 182 EQMELSILKGDYSQATVLSRKILKKTFKNPK-YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhcccCC-cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 8899999999999999999998655444332 24445677888899999999999999999999886544
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.76 E-value=0.00037 Score=60.44 Aligned_cols=65 Identities=12% Similarity=0.041 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCC-h-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 601 GIALNQMGLACVQRY---TINEAADLFEEARTILEKEYGPYH-H-DTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 601 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~-~-~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
..+.+++|+++.+.+ +.++++.+|+..++. + | ...+++++||..|.++|+|++|+.++++++++.
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~--------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK--------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 578999999999988 677999999999887 5 6 568899999999999999999999999999964
No 223
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.74 E-value=0.00033 Score=61.09 Aligned_cols=111 Identities=13% Similarity=-0.048 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829 266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE 345 (728)
Q Consensus 266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 345 (728)
.+++..-...++..|.|+.|+-....++.+.......-.+...+.++..+|.+++..++|..|...|+++|+..+.+...
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 34466677788899999999999999888865444444566677889999999999999999999999999987743211
Q ss_pred C-----------------ChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004829 346 T-----------------DHRVGETCRYVAEAHVQSLQFDEAEKICQM 376 (728)
Q Consensus 346 ~-----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 376 (728)
. .+...++.+.++.||...+++++|+..++.
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1 122347889999999999999999988665
No 224
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.73 E-value=0.00048 Score=60.02 Aligned_cols=113 Identities=12% Similarity=0.049 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcC
Q 004829 222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDG 301 (728)
Q Consensus 222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 301 (728)
-..++.....++..| .|+.|+-.+..++.+.....+..+....+.++..+|..++..++|..|...|++|+...+....
T Consensus 20 ~~~l~dqik~L~d~~-LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAG-LHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp -CCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 456888899999997 9999999999999886553322223446778899999999999999999999999988753221
Q ss_pred Cch----------------hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829 302 QDH----------------ALAKFAGCMQLGDTYAMLGQIENSILCYTAG 335 (728)
Q Consensus 302 ~~~----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 335 (728)
... .....++.+.++.||..++++.+|+..++..
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 110 1113356899999999999999999987753
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.71 E-value=0.00014 Score=62.99 Aligned_cols=88 Identities=14% Similarity=0.029 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHH
Q 004829 618 NEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG---RIDDAIEILEYVVGMREEKLGTANP-DVEDEKRRLAE 693 (728)
Q Consensus 618 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~La~ 693 (728)
..+...|.+.+.. .+....+.+++|+++.+.+ +.++++.+|+..++. +.| ...++++.||.
T Consensus 15 ~~~~~~y~~e~~~--------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv 79 (152)
T 1pc2_A 15 LKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAV 79 (152)
T ss_dssp HHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHH
Confidence 4455555555443 3445678999999999988 667999999998883 336 67899999999
Q ss_pred HHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829 694 LLKEAGRVRNRKSRSLVTFLDSNSQNLK 721 (728)
Q Consensus 694 ~~~~~g~~~~A~~~~l~~ll~~~~~~~~ 721 (728)
.+.+.|++++|+ ++++.+++..|.+..
T Consensus 80 ~~~kl~~Y~~A~-~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 80 GNYRLKEYEKAL-KYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHTSCHHHHH-HHHHHHHHHCTTCHH
T ss_pred HHHHccCHHHHH-HHHHHHHhcCCCCHH
Confidence 999999999999 999999999997643
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.67 E-value=0.00032 Score=55.95 Aligned_cols=64 Identities=16% Similarity=0.068 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 601 GIALNQMGLACVQRYT---INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM 672 (728)
Q Consensus 601 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~ 672 (728)
+.++..+|.+++..++ .++|..++++++.+ +|....+++.+|..++..|+|++|+.+|+++++.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4678888998876665 79999999999999 9999999999999999999999999999999873
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.55 E-value=0.00018 Score=57.44 Aligned_cols=71 Identities=21% Similarity=0.138 Sum_probs=62.6
Q ss_pred ChhHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhh
Q 004829 639 HHDTLGVYSNLAGTYDAMGR---IDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDS 715 (728)
Q Consensus 639 ~~~~~~~~~~La~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~ 715 (728)
+|....++..+|.++...++ .++|..++++++.+ +|....+++.+|.++...|++++|+ ..++.+++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai-~~w~~~l~~ 72 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAI-DTWVLLLDS 72 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhh
Confidence 34455688899999976666 79999999999995 5888999999999999999999999 999999998
Q ss_pred ccc
Q 004829 716 NSQ 718 (728)
Q Consensus 716 ~~~ 718 (728)
+|.
T Consensus 73 ~p~ 75 (93)
T 3bee_A 73 NDP 75 (93)
T ss_dssp CCT
T ss_pred CCC
Confidence 887
No 228
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.037 Score=58.33 Aligned_cols=220 Identities=12% Similarity=0.024 Sum_probs=140.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 004829 365 LQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYL 444 (728)
Q Consensus 365 g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 444 (728)
++++.|++.+....+..+...+. .....++..+..+++..|+++...+++... ....+..............-|.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~--~s~~r~l~~iv~l~~~~~~~~~l~e~i~~L---skkr~qlk~ai~~~V~~~~~~l 104 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDL--ASSKEVLAKIVDLLASRNKWDDLNEQLTLL---SKKHGQLKLSIQYMIQKVMEYL 104 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCST--TTCHHHHHHHHHHHHHHSCHHHHHHHHHHH---HTTTTTSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccch--hhHHHHHHHHHHHHHHhccHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHH
Confidence 56777777664444433333322 223445777888899999998887765432 2222222222222222222222
Q ss_pred -HhCCHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHH
Q 004829 445 -SLARFDEAIFSYHKALTAFKSAKGEN---HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASG 520 (728)
Q Consensus 445 -~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 520 (728)
.....+. ......++.......+. ....+.....|+.+|...|++.+|...+.....-.... .+.......
T Consensus 105 ~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~---~~~~~kve~ 179 (445)
T 4b4t_P 105 KSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS---MEMSEKIQF 179 (445)
T ss_dssp HHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS---SCHHHHHHH
T ss_pred hcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc---ccHHHHHHH
Confidence 1222221 11122222211111110 23356777889999999999999999999887654432 345677888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004829 521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE 594 (728)
Q Consensus 521 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 594 (728)
+.....+|...+++.+|..++.++..........+......+...|.++...++|.+|..+|.++.......++
T Consensus 180 ~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d 253 (445)
T 4b4t_P 180 ILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSD 253 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCC
Confidence 99999999999999999999999876555554444556777888999999999999999999999887655443
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.98 E-value=0.0047 Score=51.42 Aligned_cols=88 Identities=15% Similarity=0.041 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH---HHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHH
Q 004829 618 NEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDD---AIEILEYVVGMREEKLGTANP-DVEDEKRRLAE 693 (728)
Q Consensus 618 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~p-~~~~~~~~La~ 693 (728)
..+...|.+.+.. .+....+.+++|+++.+..+... ++.+++..+ ....| ...+.++.||.
T Consensus 18 ~~~~~~y~~e~~~--------~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~-------~~~~p~~~Rd~lY~LAv 82 (126)
T 1nzn_A 18 LKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-------PKGSKEEQRDYVFYLAV 82 (126)
T ss_dssp HHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-------TTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------hcCCcchHHHHHHHHHH
Confidence 4445555555543 33455688999999999887665 555555444 44446 67899999999
Q ss_pred HHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829 694 LLKEAGRVRNRKSRSLVTFLDSNSQNLK 721 (728)
Q Consensus 694 ~~~~~g~~~~A~~~~l~~ll~~~~~~~~ 721 (728)
.+.+.|+|++|. ++++.+++..|.+..
T Consensus 83 g~yklg~Y~~A~-~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 83 GNYRLKEYEKAL-KYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHTTCHHHHH-HHHHHHHHHCTTCHH
T ss_pred HHHHhhhHHHHH-HHHHHHHHhCCCCHH
Confidence 999999999999 999999999998643
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.58 E-value=0.028 Score=46.74 Aligned_cols=66 Identities=11% Similarity=0.009 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 601 GIALNQMGLACVQRYTINE---AADLFEEARTILEKEYGPYHH-DTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 601 ~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
..+.+++|+++....+... ++.+++..+. ...| ...+.++.||..++++|+|++|..+++.++++.
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-------~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-------KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-------TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 4688899999999887665 6666555444 3336 677899999999999999999999999999953
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.55 E-value=0.04 Score=46.91 Aligned_cols=110 Identities=22% Similarity=0.159 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 431 DVASIDCSIGDAYLSLARF------DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI 504 (728)
Q Consensus 431 ~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (728)
.....|..........|+. ++-++.|++|+..............+..+...|.. ...++.++|...|+.++.+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH
Confidence 3345566666666666888 77788888888764333223456677788888866 5679999999999999998
Q ss_pred HcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829 505 YGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550 (728)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 550 (728)
.+ ..+.+|...|..-.++|+...|.+.+.+|+.+.+.
T Consensus 90 -hK--------kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 -CK--------KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp -CT--------TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred -hH--------HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 22 13889999999999999999999999999987554
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.27 E-value=0.025 Score=48.11 Aligned_cols=105 Identities=12% Similarity=0.007 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829 560 GIEAQMGVMYYMTGNY------SDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK 633 (728)
Q Consensus 560 ~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 633 (728)
..+..........|+. ++-++.|++|+.............+...+...|.. ...++.++|.+.|+.++.+
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~--- 89 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN--- 89 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH---
Confidence 3444445555555777 77778888888875443333445566777777755 5669999999999999997
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 634 EYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 634 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~ 673 (728)
|...+.++...|..-.++|+...|...+.+++.+.
T Consensus 90 -----hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 90 -----CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp -----CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -----hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 55558899999999999999999999999999853
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.76 E-value=0.2 Score=51.61 Aligned_cols=131 Identities=15% Similarity=0.112 Sum_probs=92.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHhCCCCcHHH
Q 004829 522 IDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDS-YNTLKSAISKFRTSGEKKSALF 600 (728)
Q Consensus 522 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~~~~~~~ 600 (728)
...|......|+.+.|...+.+|+.++...+-.. +. ...|-.+ ...+++. .
T Consensus 119 ~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~------------~~--~~~w~~~~r~~l~~~--------------~ 170 (388)
T 2ff4_A 119 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD------------LR--DFQFVEPFATALVED--------------K 170 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG------------GT--TSTTHHHHHHHHHHH--------------H
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC------------CC--chhHHHHHHHHHHHH--------------H
Confidence 3344444567899999999999998875331100 00 0112111 1111111 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC-
Q 004829 601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGT- 679 (728)
Q Consensus 601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~- 679 (728)
..++..++.++...|++.+|+..+..++.. +|....++..|..+|...|+..+|+..|+++.....+-+|.
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~ 242 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID 242 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 245666788899999999999999999988 88888899999999999999999999999999988887773
Q ss_pred CChHHHHHH
Q 004829 680 ANPDVEDEK 688 (728)
Q Consensus 680 ~~p~~~~~~ 688 (728)
-.|.....+
T Consensus 243 P~~~l~~l~ 251 (388)
T 2ff4_A 243 PGPTLRALN 251 (388)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 334444444
No 234
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.72 E-value=0.36 Score=55.28 Aligned_cols=162 Identities=14% Similarity=0.071 Sum_probs=87.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHH
Q 004829 437 CSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEE 516 (728)
Q Consensus 437 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 516 (728)
..+...+...|.+++|+...+. +.. ...+....|++++|.+..+. . +.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------------~~~------~f~~~l~~~~~~~A~~~~~~-------~----~~-- 680 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------------QDQ------KFELALKVGQLTLARDLLTD-------E----SA-- 680 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------------HHH------HHHHHHHHTCHHHHHHHHTT-------C----CC--
T ss_pred HHHHHHHHhCCChHHheecCCC-------------cch------heehhhhcCCHHHHHHHHHh-------h----Cc--
Confidence 5566677778888887765432 211 12334667888888776432 1 12
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004829 517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK 596 (728)
Q Consensus 517 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 596 (728)
...|..+|..+...++++.|+.+|.++-.. ..+..+|...|+.+......+.+.. .+.
T Consensus 681 -~~~W~~la~~al~~~~~~~A~~~y~~~~d~---------------~~l~~l~~~~~~~~~~~~~~~~a~~----~~~-- 738 (814)
T 3mkq_A 681 -EMKWRALGDASLQRFNFKLAIEAFTNAHDL---------------ESLFLLHSSFNNKEGLVTLAKDAET----TGK-- 738 (814)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHTCH---------------HHHHHHHHHTTCHHHHHHHHHHHHH----TTC--
T ss_pred -HhHHHHHHHHHHHcCCHHHHHHHHHHccCh---------------hhhHHHHHHcCCHHHHHHHHHHHHH----cCc--
Confidence 356888999999999999999998876322 1334445555655543333222221 110
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH
Q 004829 597 SALFGIALNQMGLACVQRYTINEAADLFEE------ARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRID 660 (728)
Q Consensus 597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~ 660 (728)
+.....+|+..|++++|+++|.+ |+.+.+.. ++.......+....+.-+...|+.+
T Consensus 739 -------~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~-~~~~~~i~~~~~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 739 -------FNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTY-GLGDNEVNDIVTKWKENLILNGKNT 800 (814)
T ss_dssp -------HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred -------hHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhccchh
Confidence 11112345556777777776644 33333331 2111113445555555556666543
No 235
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.71 E-value=0.2 Score=57.50 Aligned_cols=47 Identities=19% Similarity=0.123 Sum_probs=32.2
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004829 319 YAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMAL 378 (728)
Q Consensus 319 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 378 (728)
....|++++|.++.+. ......|..+|..+...++++.|+.+|.++-
T Consensus 662 ~l~~~~~~~A~~~~~~-------------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTD-------------ESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTT-------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHh-------------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3456777777665432 1223567888888888888888888887763
No 236
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.054 Score=56.83 Aligned_cols=112 Identities=21% Similarity=0.124 Sum_probs=90.3
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829 429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP 508 (728)
Q Consensus 429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 508 (728)
......++..+|..|...|+++.|.+.|.++...+.. .......+..+..++...+++..+..++.++..+....
T Consensus 127 e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-----~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~ 201 (429)
T 4b4t_R 127 ELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS-----TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG 201 (429)
T ss_dssp CCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC-----CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC
Confidence 3445567889999999999999999999998775432 33456788888999999999999999999999887663
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 509 NHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY 548 (728)
Q Consensus 509 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 548 (728)
.++..........|.++...++|..|..+|-.+...+
T Consensus 202 ---~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 202 ---GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp ---CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred ---CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 3445555666777888889999999999998876554
No 237
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.16 Score=53.17 Aligned_cols=109 Identities=14% Similarity=0.172 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004829 473 AVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTP 552 (728)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 552 (728)
....++..+|..|...|++++|.+.|.++....... ......+..+..++...+++..+..++.++..+....
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~------~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~- 201 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST------GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG- 201 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC------CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC-
Confidence 345678889999999999999999999998876542 2367788889999999999999999999998887665
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 553 GQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK 588 (728)
Q Consensus 553 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 588 (728)
+++..........|.++...++|..|..+|..+...
T Consensus 202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 445555566667788889999999999999887654
No 238
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=95.38 E-value=2.4 Score=41.89 Aligned_cols=223 Identities=13% Similarity=0.047 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHcCCCCCCC
Q 004829 435 IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKL-RDSKSYCENALKIYGKPNHGIP 513 (728)
Q Consensus 435 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~ 513 (728)
+++.-+..+.+.|++..|.++..-.++.+.+..-+-. ......+..++.....- ..=..+.++++....+.. ..
T Consensus 57 LL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~---~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g--~~ 131 (336)
T 3lpz_A 57 ILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD---GASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFG--DY 131 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHS--SC
T ss_pred HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcC--CC
Confidence 3344445555666666666666555555554421111 12333444444433321 122345555555543311 11
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004829 514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG 593 (728)
Q Consensus 514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 593 (728)
.......+..+|..|...+++.+|..+|-. +.... +..+..+-.-+...+.
T Consensus 132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il---------g~~~s-~~~~a~mL~ew~~~~~------------------- 182 (336)
T 3lpz_A 132 PAGDPELHHVVGTLYVEEGEFEAAEKHLVL---------GTKES-PEVLARMEYEWYKQDE------------------- 182 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHTT---------SCTTH-HHHHHHHHHHHHHTSC-------------------
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHh---------cCCch-HHHHHHHHHHHHHhcC-------------------
Confidence 112234566677777777777776666521 11110 0111111111111111
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-----------------CCChhHHHHHHHHHHHHHHc
Q 004829 594 EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG-----------------PYHHDTLGVYSNLAGTYDAM 656 (728)
Q Consensus 594 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------~~~~~~~~~~~~La~~~~~~ 656 (728)
+.............|+..++...|...+....+.+..... +..|.. ... .+..+-...
T Consensus 183 ---~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLL-NFl-~lLllt~q~ 257 (336)
T 3lpz_A 183 ---SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLL-NFI-SMLLLSVQK 257 (336)
T ss_dssp ---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHH-HHH-HHHHHHHHS
T ss_pred ---CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchH-HHH-HHHHHHHhc
Confidence 1111222333345677789999999988887766543211 112221 122 222233344
Q ss_pred CChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCC
Q 004829 657 GRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR 700 (728)
Q Consensus 657 g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 700 (728)
+. ...|....+.+...+..+.|.....+..+|.+|+....
T Consensus 258 ~~----~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~~ 297 (336)
T 3lpz_A 258 GS----PDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQR 297 (336)
T ss_dssp CC----HHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCCC
T ss_pred CC----HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCCC
Confidence 43 35666666666666655533778889999999997643
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.04 E-value=0.14 Score=42.77 Aligned_cols=70 Identities=14% Similarity=0.033 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829 643 LGVYSNLAGTYDAMGRI---DDAIEILEYVVGMREEKLGTANP-DVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ 718 (728)
Q Consensus 643 ~~~~~~La~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~ 718 (728)
..+.+++|+++.+..+. .+++.+++..+. .+| ...+.++.||..+.++|++++|. ++.+.+++..|.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~--------~~~~~~Rd~LYyLAvg~yklgdY~~Ar-~y~d~lL~~eP~ 110 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--------EAESRRRECLYYLTIGCYKLGEYSMAK-RYVDTLFEHERN 110 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH--------HCGGGHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHTTCTT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--------cCcchhHHHHHHHHHHHHHhhhHHHHH-HHHHHHHhhCCC
Confidence 46889999999988765 456777766665 235 57899999999999999999999 999999999998
Q ss_pred ccc
Q 004829 719 NLK 721 (728)
Q Consensus 719 ~~~ 721 (728)
+..
T Consensus 111 N~Q 113 (134)
T 3o48_A 111 NKQ 113 (134)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.04 E-value=0.34 Score=40.35 Aligned_cols=64 Identities=5% Similarity=-0.068 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 601 GIALNQMGLACVQRYT---INEAADLFEEARTILEKEYGPYHH-DTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM 672 (728)
Q Consensus 601 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~ 672 (728)
..+.+++|+++....+ ..+++.+++..+.. +| ...+.++.||..+.++|+|++|..+.+.++++
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4788889999988875 45678888777665 55 56789999999999999999999999999984
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.72 E-value=0.23 Score=41.99 Aligned_cols=72 Identities=15% Similarity=0.054 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHcCChH---HHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhc
Q 004829 641 DTLGVYSNLAGTYDAMGRID---DAIEILEYVVGMREEKLGTANP-DVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSN 716 (728)
Q Consensus 641 ~~~~~~~~La~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~ 716 (728)
....+.+++|+++.+..+.. +++.+++..+. .+| ...+.++.||..+.++|+|++|. ++.+.+++..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~--------~~~~~~RdcLYyLAvg~ykl~~Y~~Ar-~y~d~lL~~e 107 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--------EAESRRRECLYYLTIGCYKLGEYSMAK-RYVDTLFEHE 107 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH--------HCCSTHHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--------cCccchhHHHHHHHHHHHHhhhHHHHH-HHHHHHHhcC
Confidence 34568899999999987654 56666666655 233 57889999999999999999999 9999999999
Q ss_pred ccccc
Q 004829 717 SQNLK 721 (728)
Q Consensus 717 ~~~~~ 721 (728)
|.+..
T Consensus 108 P~n~Q 112 (144)
T 1y8m_A 108 RNNKQ 112 (144)
T ss_dssp CCCHH
T ss_pred CCcHH
Confidence 98643
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.67 E-value=0.35 Score=53.78 Aligned_cols=123 Identities=11% Similarity=0.052 Sum_probs=84.0
Q ss_pred cCC-HHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHH--H-cCCHHHHHHHHHHHHHHHHH----hCCCCc-----
Q 004829 531 MNE-LEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYY--M-TGNYSDSYNTLKSAISKFRT----SGEKKS----- 597 (728)
Q Consensus 531 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~--~-~g~~~~A~~~~~~al~~~~~----~~~~~~----- 597 (728)
.++ ++.|+.++++.....+.. .++...+.+.. . ..+--+|+..+.++++.... ......
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~--------~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIH--------DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGG--------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCch--------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 445 577888888866654332 12222222221 1 22344677778777754321 111110
Q ss_pred -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829 598 -ALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYV 669 (728)
Q Consensus 598 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a 669 (728)
+.....+...+..+...|+++-|+.+.++|+.. .|....+|+.|+.+|..+|+|+.|+-.+.-+
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112345666788888999999999999999999 8888899999999999999999999888766
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.63 E-value=7.9 Score=44.02 Aligned_cols=175 Identities=15% Similarity=0.157 Sum_probs=93.6
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC---CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829 514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ---QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR 590 (728)
Q Consensus 514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 590 (728)
.....-+++.+|.++...++ +++.++...+.-.....+. ......+...||.+|.-.++ +++...+...+.-
T Consensus 409 ~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~d-- 483 (963)
T 4ady_A 409 RFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYN-- 483 (963)
T ss_dssp HHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhc--
Confidence 44567778888888877664 6777777766543211121 11222344567777776665 3455555555431
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004829 591 TSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVV 670 (728)
Q Consensus 591 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al 670 (728)
........+-..||.++...|+-+....++..+.+- .+ +...-...+|..+...|+.+.+....+...
T Consensus 484 ----d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~-------~~-e~vrR~aalgLGll~~g~~e~~~~li~~L~ 551 (963)
T 4ady_A 484 ----DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET-------QH-GNITRGLAVGLALINYGRQELADDLITKML 551 (963)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC-------SC-HHHHHHHHHHHHHHTTTCGGGGHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc-------Cc-HHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Confidence 111112246667888888888876666655554431 12 222222344444556677766665555443
Q ss_pred HHHHHHcCCCChHH-HHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 004829 671 GMREEKLGTANPDV-EDEKRRLAELLKEAGRVRNRKSRSLVTFL 713 (728)
Q Consensus 671 ~~~~~~~~~~~p~~-~~~~~~La~~~~~~g~~~~A~~~~l~~ll 713 (728)
. ..+|.. ..+...++..|...|+. .|++..|..+.
T Consensus 552 ~-------~~dp~vRygaa~alglAyaGTGn~-~aIq~LL~~~~ 587 (963)
T 4ady_A 552 A-------SDESLLRYGGAFTIALAYAGTGNN-SAVKRLLHVAV 587 (963)
T ss_dssp H-------CSCHHHHHHHHHHHHHHTTTSCCH-HHHHHHHHHHH
T ss_pred h-------CCCHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHhc
Confidence 3 133433 22344556666667764 33324555444
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.57 E-value=0.39 Score=40.56 Aligned_cols=64 Identities=5% Similarity=-0.038 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 601 GIALNQMGLACVQRYTI---NEAADLFEEARTILEKEYGPYHH-DTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM 672 (728)
Q Consensus 601 ~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~ 672 (728)
..+.+++|+++....+. .+++.+++..+.. +| ...+.++.||..++++|+|++|..+.+.++++
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 56788899999988754 5677777776664 44 56779999999999999999999999999984
No 245
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.39 Score=50.46 Aligned_cols=144 Identities=10% Similarity=-0.023 Sum_probs=66.6
Q ss_pred HHHHhCCHHHHHHHHHHHH--HHHHHcC-CCCcHHHHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHHHHHhc
Q 004829 360 AHVQSLQFDEAEKICQMAL--DIHRENT-SPASIEEAADRRLMGLICDSKGDYEAAL----------EHYVLASMSMAAN 426 (728)
Q Consensus 360 ~~~~~g~~~~A~~~~~~al--~~~~~~~-~~~~~~~a~~~~~lg~~~~~~g~~~~A~----------~~~~~al~~~~~~ 426 (728)
.++..+++++|..+....+ +...... ..-+...+.+|+..+.++...|+..... ..+..+++.....
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 3456778888888776655 2222111 1122335667888888888888766532 2333334444444
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc
Q 004829 427 GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYG 506 (728)
Q Consensus 427 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 506 (728)
.+....+.+++.+-..|...+.|+.|..+..++.- ... ...+...+..++.+|.++..+++|.+|.+++..|+..+.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEY--PHT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC--Ccc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 56677788899999999999999999999988731 110 012345678889999999999999999999999987653
No 246
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.40 E-value=0.37 Score=50.63 Aligned_cols=171 Identities=13% Similarity=0.056 Sum_probs=75.6
Q ss_pred HHHHcCCHHHHHHHHHHHH--HHHH---hcCCChhHHHHHHHHHHHHHHhCCHHHHHHHH-------HHHHHHHHHh-cC
Q 004829 402 ICDSKGDYEAALEHYVLAS--MSMA---ANGHELDVASIDCSIGDAYLSLARFDEAIFSY-------HKALTAFKSA-KG 468 (728)
Q Consensus 402 ~~~~~g~~~~A~~~~~~al--~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-------~~al~~~~~~-~~ 468 (728)
.+...+++++|..+-...+ .... ...-+...+.+|+..+.++...|+........ ...+..++.. +.
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 4455677888877665443 1111 12234456777888888888888776543221 1222333322 22
Q ss_pred CCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 469 ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY 548 (728)
Q Consensus 469 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 548 (728)
.|....+..++.+-+.|...+.|+.|..+..++. +... .......+..++.+|.++..+++|.+|.+++..|+...
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~--~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHT--DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTT--TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcc--cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 3455667888889999999999999999999874 2111 12355678888999999999999999999999998766
Q ss_pred hcCCCCCCcHHHHHHHHHHHHHHcCCHH
Q 004829 549 GKTPGQQSTIAGIEAQMGVMYYMTGNYS 576 (728)
Q Consensus 549 ~~~~~~~~~~~~~~~~la~~~~~~g~~~ 576 (728)
+...........++..+..+-+-+|+..
T Consensus 301 p~~~~a~gfr~~a~K~lI~V~LLlG~iP 328 (523)
T 4b4t_S 301 PHNSKSLGFLQQSNKLHCCIQLLMGDIP 328 (523)
T ss_dssp SCSSSCSHHHHHHHHHHHHHHHHHTCCC
T ss_pred CcchhhhhHHHHHHHHHHhHHhhcCCCC
Confidence 5432222223334333333433356543
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.27 E-value=4.4 Score=39.68 Aligned_cols=131 Identities=11% Similarity=-0.054 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 004829 407 GDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYH 486 (728)
Q Consensus 407 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 486 (728)
|+|=+|.+.|+.....+...+........++.-+..+...|++..|.++..-.++.+.+.. .+........+..++.
T Consensus 27 G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~---~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 27 GDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAE---VKVDDISVARLVRLIA 103 (312)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CCCSHHHHHHHHHHHT
T ss_pred cChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH
Confidence 4444444444443333333333333334445555666677777777777666666666542 1112233444555544
Q ss_pred HcCChH-HHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829 487 KIGKLR-DSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLN 542 (728)
Q Consensus 487 ~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 542 (728)
....-+ .=..+.++++....+... ........+..+|..|...|++.+|..+|-
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~--~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSE--YKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSS--CTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 433211 235666777776654321 112234567788888888888887777664
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.94 E-value=0.3 Score=54.35 Aligned_cols=59 Identities=12% Similarity=0.015 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829 311 GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMA 377 (728)
Q Consensus 311 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 377 (728)
.+...+..+...|+|+-|+.+.++|+.. .|....+|+.|+.+|..+|+|+.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4666788888899999999999999999 7899999999999999999999999776554
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.69 E-value=1.7 Score=44.66 Aligned_cols=103 Identities=11% Similarity=-0.085 Sum_probs=79.6
Q ss_pred HHHHHHcCChhHHHHHHHHhhhhhhhhcCCch---h----------HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829 273 AAIHCSLGQYNEAIPVLERSVEIPVLEDGQDH---A----------LAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQ 339 (728)
Q Consensus 273 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 339 (728)
|......|+.+.|...+.+|+.+..-..-... . .....+...++..+...|++.+|+..+..++..
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~- 200 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE- 200 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 44445568999999999999988742111111 0 112335667788889999999999999999888
Q ss_pred HHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829 340 RQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRE 383 (728)
Q Consensus 340 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 383 (728)
+|..-.++..+-.+++..|+..+|+..|+++.....+
T Consensus 201 -------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~ 237 (388)
T 2ff4_A 201 -------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD 237 (388)
T ss_dssp -------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 7888889999999999999999999999999886654
No 250
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.87 E-value=2.2 Score=37.75 Aligned_cols=102 Identities=15% Similarity=0.071 Sum_probs=65.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHH
Q 004829 231 EMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFA 310 (728)
Q Consensus 231 ~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 310 (728)
..+..| +++.|.+..+.. . ....|..+|......|+++-|+.+|.++-.
T Consensus 14 LAL~lg-~l~~A~e~a~~l---------~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------------- 62 (177)
T 3mkq_B 14 LALEYG-NLDAALDEAKKL---------N-----DSITWERLIQEALAQGNASLAEMIYQTQHS---------------- 62 (177)
T ss_dssp HHHHTT-CHHHHHHHHHHH---------C-----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------------
T ss_pred HHHhcC-CHHHHHHHHHHh---------C-----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------------
Confidence 445665 888888886543 0 133588899999999999999999998664
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829 311 GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMA 377 (728)
Q Consensus 311 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 377 (728)
+-.+..+|...|+.+.-...-+.+... .+ +.....+++..|++++++++|.+.
T Consensus 63 -~~~L~~Ly~~tg~~e~L~kla~iA~~~-------g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 63 -FDKLSFLYLVTGDVNKLSKMQNIAQTR-------ED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp -HHHHHHHHHHHTCHHHHHHHHHHHHHT-------TC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHC-------cc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 334555666677775544333332211 01 122234566788888888877554
No 251
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.83 E-value=2.4 Score=37.53 Aligned_cols=102 Identities=9% Similarity=0.007 Sum_probs=65.1
Q ss_pred HHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Q 004829 274 AIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGET 353 (728)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 353 (728)
......|+++.|.+..+..-. -..|..||......|+++-|+.+|.++-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~~--------------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------------- 63 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLND--------------SITWERLIQEALAQGNASLAEMIYQTQHSF--------------- 63 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHCC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH---------------
T ss_pred HHHHhcCCHHHHHHHHHHhCC--------------HHHHHHHHHHHHHcCChHHHHHHHHHhCCH---------------
Confidence 345677999999888765311 124899999999999999999999876443
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829 354 CRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVL 418 (728)
Q Consensus 354 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 418 (728)
..+..+|...|+.+.-.. ..++....++ ++....+++..|+++++++.|.+
T Consensus 64 -~~L~~Ly~~tg~~e~L~k----la~iA~~~g~---------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 64 -DKLSFLYLVTGDVNKLSK----MQNIAQTRED---------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp -HHHHHHHHHHTCHHHHHH----HHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -HHHHHHHHHhCCHHHHHH----HHHHHHHCcc---------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 123334556676654332 3333332221 34445567778888888877654
No 252
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.69 E-value=1.1 Score=51.17 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004829 600 FGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGT 679 (728)
Q Consensus 600 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 679 (728)
....|+.+-..|.+.|+.++|..+|.+.......-. .|+ ..+|..|...|.+.|+.++|.++|++..+. .
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~------G 195 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---LLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDA------G 195 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---TCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------T
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---CCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc------C
Confidence 346788899999999999999999988765433222 344 348899999999999999999999988762 1
Q ss_pred CChHHHHHHHHHHHHHHHhCCh-hHHHHHHHHHHHhh
Q 004829 680 ANPDVEDEKRRLAELLKEAGRV-RNRKSRSLVTFLDS 715 (728)
Q Consensus 680 ~~p~~~~~~~~La~~~~~~g~~-~~A~~~~l~~ll~~ 715 (728)
-.|+ ...|..|-..+.+.|+. ++|. +.++.+.+.
T Consensus 196 ~~PD-vvTYntLI~glcK~G~~~e~A~-~Ll~EM~~k 230 (1134)
T 3spa_A 196 LTPD-LLSYAAALQCMGRQDQDAGTIE-RCLEQMSQE 230 (1134)
T ss_dssp CCCC-HHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHH
T ss_pred CCCc-HHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHc
Confidence 3354 45677777889999986 5677 788877654
No 253
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.20 E-value=1.3 Score=50.62 Aligned_cols=104 Identities=8% Similarity=-0.027 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChh--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004829 390 IEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELD--VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK 467 (728)
Q Consensus 390 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 467 (728)
.....+++.+-..|++.|+.++|..+|........ ... ...+|+.|-..|.+.|++++|.++|++..+.
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~----kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~----- 194 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQ----KRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA----- 194 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHH----HHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh----cCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----
Confidence 34555677777788888888888877765432100 000 3456777777788888888888887777553
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHH
Q 004829 468 GENHPAVASVFVRLADLYHKIGKL-RDSKSYCENALKI 504 (728)
Q Consensus 468 ~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~ 504 (728)
+-.| ...+|..+-.++.+.|+. ++|..++++....
T Consensus 195 -G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 195 -GLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp -TCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred -CCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 2233 345566666677777764 5677777777665
No 254
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=90.30 E-value=7.8 Score=36.02 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHH
Q 004829 450 DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK-IGKLRDSKSYCENALKI 504 (728)
Q Consensus 450 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 504 (728)
+.|...|+.|+++....+.+.||-......+.+..|+. +++.++|....+++.+-
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~ 202 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 202 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57888999999999888888899888888888877776 79999999888877664
No 255
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=90.05 E-value=11 Score=34.51 Aligned_cols=177 Identities=11% Similarity=0.006 Sum_probs=103.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH----HHcCCCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCC
Q 004829 480 RLADLYHKIGKLRDSKSYCENALK----IYGKPNHGIPSEEIASGLIDIAAIYQS-MNELEQAVKLLNKALKIYGKTPGQ 554 (728)
Q Consensus 480 ~la~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~ 554 (728)
.+|.+....++|++...+.+++.. ..... ...-.+.|..+|-. .|....+...+....+- ..+.
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eL--------t~EERnLLSvAYKNvig~rR~swRiissiEqk---ek~~ 79 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSEF--------DDEERHLLTLCIKHKISDYRTMTSQVLQEQTK---QLNN 79 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCSC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCC--------CHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH---HcCC
Confidence 678889999999999999999988 42221 11222333333322 23333344433332211 1111
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHH
Q 004829 555 QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACV-----QRYTINEAADLFEEART 629 (728)
Q Consensus 555 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~ 629 (728)
.. ...+..-|.. .=-.+-...+...+.+.....-+........+-..|..|. ..|+.+.|...|+.|.+
T Consensus 80 ~~-----~~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~ 153 (227)
T 2o8p_A 80 DE-----LVKICSEYVF-SLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFT 153 (227)
T ss_dssp HH-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHH
Confidence 10 0111111211 1112334456666666665543322212222233344433 35678999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHH
Q 004829 630 ILEKEYGPYHHDTLGVYSNLAGTYD-AMGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~La~~~~-~~g~~~~A~~~~~~al~~~ 673 (728)
+....+.|.||-......+.+..|+ -+++.++|..+.++|+.+.
T Consensus 154 iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 154 LLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 9998888889988887777776655 5899999999999998754
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.27 E-value=18 Score=35.66 Aligned_cols=243 Identities=14% Similarity=0.071 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChh
Q 004829 352 ETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELD 431 (728)
Q Consensus 352 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 431 (728)
..+..++.=|.++++|++|++++....... ...|++.-|.++....++.+...+...+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~~l----------------------l~~~Q~~sg~DL~~llvevy~~~~~~~~ 93 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQTL----------------------LRSGQGGSGGDLAVLLVDTFRQAGQRVD 93 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------HHTTCHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHH----------------------HHCCCcchHHHHHHHHHHHHHHcCCCCC
Confidence 445556666777778877777665554433 3344444444444444444433333322
Q ss_pred HHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCC
Q 004829 432 VASIDCSIGDAYLSLARF-DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH 510 (728)
Q Consensus 432 ~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 510 (728)
. .....+..++.....- ..=..+.++++....+. |.........+..+|..|+..+++.+|..+|--
T Consensus 94 ~-~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il---------- 161 (336)
T 3lpz_A 94 G-ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL---------- 161 (336)
T ss_dssp H-HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT----------
T ss_pred H-HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh----------
Confidence 2 2333444444333321 12244566666665552 333333456677899999999999998888731
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829 511 GIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR 590 (728)
Q Consensus 511 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 590 (728)
+.+. .+..+..+-.-+...+.. .............|+..++...|...+....+.+.
T Consensus 162 g~~~--s~~~~a~mL~ew~~~~~~---------------------~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~ 218 (336)
T 3lpz_A 162 GTKE--SPEVLARMEYEWYKQDES---------------------HTAPLYCARAVLPYLLVANVRAANTAYRIFTSALV 218 (336)
T ss_dssp SCTT--HHHHHHHHHHHHHHTSCG---------------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCc--hHHHHHHHHHHHHHhcCC---------------------ccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 1111 112221111111222211 11111222334457788999999998887776653
Q ss_pred HhCCC-----------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004829 591 TSGEK-----------------KSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTY 653 (728)
Q Consensus 591 ~~~~~-----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~ 653 (728)
..... ..+. .-+..+-..-++.+.. ..|....+.+......+.+.....+..+|..|
T Consensus 219 ~~~p~L~~q~~~~~~~~~~~~p~~PL--LNFl~lLllt~q~~~~----~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~Y 292 (336)
T 3lpz_A 219 EDNKGLTVQNIGSQSAELRIFPSLPL--LNFISMLLLSVQKGSP----DLFRQLKSKYEANLNELNGIWDTALELIAEMY 292 (336)
T ss_dssp HHCTTSCCEESCC--CCCEECTTCHH--HHHHHHHHHHHHSCCH----HHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHH
T ss_pred hcCCCccccccccCCcccccCCCCch--HHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 32111 1221 1223333344455543 45555555544443333226677788888888
Q ss_pred HHcC
Q 004829 654 DAMG 657 (728)
Q Consensus 654 ~~~g 657 (728)
+...
T Consensus 293 Fgi~ 296 (336)
T 3lpz_A 293 FGIQ 296 (336)
T ss_dssp HCCC
T ss_pred cCCC
Confidence 8664
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.24 E-value=7.2 Score=46.39 Aligned_cols=130 Identities=10% Similarity=-0.003 Sum_probs=85.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc----------
Q 004829 481 LADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK---------- 550 (728)
Q Consensus 481 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---------- 550 (728)
+...+...+.++-+..+. ..... .+ ...+.+|.++...|++++|..+|+++-.....
T Consensus 818 l~~~l~~~~~~~~~~~l~----~~~~~------~~---~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~ 884 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLI----GWLNS------DP---IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLRE 884 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHH----HHSCC------CH---HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHH
T ss_pred HHHHHHHhhhHHHHHHHh----hhccC------Cc---HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcc
Confidence 444555666666554422 23222 22 23477999999999999999999886321111
Q ss_pred ------CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829 551 ------TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLF 624 (728)
Q Consensus 551 ------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 624 (728)
...........|..+..++...+.++.+++..+.|++.. ...........+.++=..+...|+|++|...+
T Consensus 885 ~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~---~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 885 FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK---ETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 111122344567788889999999999999999998752 22222223446777888899999999998776
Q ss_pred HH
Q 004829 625 EE 626 (728)
Q Consensus 625 ~~ 626 (728)
..
T Consensus 962 ~~ 963 (1139)
T 4fhn_B 962 MV 963 (1139)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 258
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=89.07 E-value=11 Score=32.77 Aligned_cols=175 Identities=13% Similarity=0.020 Sum_probs=104.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--H--------H
Q 004829 521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK--F--------R 590 (728)
Q Consensus 521 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~--------~ 590 (728)
-..++.+++-.|+|..|+-++.. . ..+.+.+.-+.||....++..|+..++..++- - -
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L~~-------l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~ 103 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHLHK-------L-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI 103 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT-------C-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred HhhhhhhhhhcchHhHHHHHHHh-------c-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence 34567778888998877766542 1 11445566788999999999999999988731 1 0
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-------------HcC
Q 004829 591 TSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYD-------------AMG 657 (728)
Q Consensus 591 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~-------------~~g 657 (728)
+..-.++......+..+|.++.+.|+.++|+.+|...... .+-...+- +| +|. ..|
T Consensus 104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~--------~~lf~~vE-nl--iyeN~vp~~~d~~~i~~~~ 172 (242)
T 3kae_A 104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK--------SFLFSPVE-NL--LLENKVPQKRDKENVRQTG 172 (242)
T ss_dssp HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCHHHHH-HH--HHTTCCCCCC---------
T ss_pred ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC--------ccccchHH-HH--HhhcCCCcccchHHHHhhh
Confidence 0100112223456788899999999999999999988765 33222111 11 110 111
Q ss_pred ChHHHHHHHHHHHHHHHHH-------cCCCChHHHH-HHHHHHHHHHHhCChhHHHHHHHHHHHhhcccc
Q 004829 658 RIDDAIEILEYVVGMREEK-------LGTANPDVED-EKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN 719 (728)
Q Consensus 658 ~~~~A~~~~~~al~~~~~~-------~~~~~p~~~~-~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~ 719 (728)
+-.--.+++.....+.+.+ ....-|.... ....-|..|..+|-.++.. ..+..+...+|..
T Consensus 173 ~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~-~lf~~lR~kDP~F 241 (242)
T 3kae_A 173 RRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSK-ACFELVRRKDPMF 241 (242)
T ss_dssp --CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTTT
T ss_pred hccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHH-HHHHHHHhcCCCc
Confidence 1111123333333332211 1122343322 2235577889999999999 9999999888865
No 259
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=88.89 E-value=15 Score=34.42 Aligned_cols=183 Identities=10% Similarity=0.015 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCCC
Q 004829 477 VFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS-MNELEQAVKLLNKALKIYGKTPGQQ 555 (728)
Q Consensus 477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 555 (728)
-+..+|.+....++|++...+.+++....... ...-.+.|..+|-. .|....+...+....+... ..+..
T Consensus 33 ~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eL--------t~EERNLLSvAYKNvIgarR~swRiissieqkee-~~g~~ 103 (261)
T 3ubw_A 33 DLVYQAKLAEQAERYDEMVESMKKVAGMDVEL--------TVEERNLLSVAYKNVIGARRASWRIISSIEQKEE-NKGGE 103 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCcC--------CHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhh-ccccH
Confidence 45667888889999999999999887653221 11222333333321 2333344444332222211 11111
Q ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CC-CCcHHHHHHHHHHHHHHHHc-----C-----CHHHHHH
Q 004829 556 STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS--GE-KKSALFGIALNQMGLACVQR-----Y-----TINEAAD 622 (728)
Q Consensus 556 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~-~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~ 622 (728)
.. ..+..-|.. .=-.+-...+...+.+.... .. .........+-..|..|.-. | -.+.|..
T Consensus 104 ~~-----~~~i~~yr~-kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~ 177 (261)
T 3ubw_A 104 DK-----LKMIREYRQ-MVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLV 177 (261)
T ss_dssp HH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHH
Confidence 00 011111110 00112233444555544332 11 11111112222334444322 2 2467889
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHH
Q 004829 623 LFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA-MGRIDDAIEILEYVVGMRE 674 (728)
Q Consensus 623 ~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~-~g~~~~A~~~~~~al~~~~ 674 (728)
.|++|.++....+.|.||-......+.+..|+. +++.++|..+.++|..-.-
T Consensus 178 aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai 230 (261)
T 3ubw_A 178 AYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI 230 (261)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999999888999999998888888877665 7999999999888876543
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.67 E-value=6.5 Score=46.73 Aligned_cols=102 Identities=10% Similarity=-0.000 Sum_probs=74.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------HhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004829 396 RRLMGLICDSKGDYEAALEHYVLASMSM-----------------AANGHELDVASIDCSIGDAYLSLARFDEAIFSYHK 458 (728)
Q Consensus 396 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 458 (728)
.+.+|.++...|++++|..+|.++..-. ............|..+..++...+.++.++++.+.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4789999999999999999998763111 11111222345678888899999999999999999
Q ss_pred HHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829 459 ALTAFKSAKGENHPA-VASVFVRLADLYHKIGKLRDSKSYCENA 501 (728)
Q Consensus 459 al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 501 (728)
|++.. +.+.+. ....+.++-..+...|+|++|...+...
T Consensus 925 Ai~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 925 ADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 98762 223443 3346778888899999999998777543
No 261
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=88.65 E-value=16 Score=34.18 Aligned_cols=184 Identities=12% Similarity=0.064 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCCC
Q 004829 477 VFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS-MNELEQAVKLLNKALKIYGKTPGQQ 555 (728)
Q Consensus 477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 555 (728)
-+..+|.+....++|++...+.+++....... ...-.+.|..+|-. .|....+...+....+..... +..
T Consensus 6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eL--------t~EERnLLSvAYKNvig~rR~swRiissieqke~~~-~~~ 76 (248)
T 3uzd_A 6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPL--------SNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSAD-GNE 76 (248)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcC--------CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhcc-CCH
Confidence 35667888899999999999999887753221 11223334444422 233344444443322221111 222
Q ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---CCCc--HHHHHHHHHHHHHHHHc-----C-----CHHHH
Q 004829 556 STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG---EKKS--ALFGIALNQMGLACVQR-----Y-----TINEA 620 (728)
Q Consensus 556 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~--~~~~~~~~~la~~~~~~-----g-----~~~~A 620 (728)
..... ..-|. ..=-.+-...+...+.+..... .... ......+-..|..|.-. | -.+.|
T Consensus 77 ~~~~~-----i~~yr-~kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a 150 (248)
T 3uzd_A 77 KKIEM-----VRAYR-EKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESS 150 (248)
T ss_dssp C-HHH-----HHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHH-----HHHHH-HHHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHH
Confidence 11111 11111 0001122334445555443321 1111 12222233334444322 2 24678
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHH
Q 004829 621 ADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA-MGRIDDAIEILEYVVGMREE 675 (728)
Q Consensus 621 ~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~-~g~~~~A~~~~~~al~~~~~ 675 (728)
...|++|..+....+.|.||-......+.+..|+. +++.++|..+.++|+.-.-.
T Consensus 151 ~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~ 206 (248)
T 3uzd_A 151 EKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIA 206 (248)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 89999999999988999999998888888877665 89999999998888765433
No 262
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.26 E-value=40 Score=38.41 Aligned_cols=175 Identities=9% Similarity=-0.002 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829 431 DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGE--NHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP 508 (728)
Q Consensus 431 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 508 (728)
....+++.+|.++...+ .+++.++...+.-.....|. .......+...||.++.-.++ +++...+...+.-.
T Consensus 411 ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd--- 484 (963)
T 4ady_A 411 IKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYND--- 484 (963)
T ss_dssp HHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcC---
Confidence 35666777777776555 46777776665531100000 011223455577777766655 45566666555421
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 509 NHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK 588 (728)
Q Consensus 509 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 588 (728)
+......+-..+|.++.-.|+-+....++..+.+ . ......-...+|..+...|+.+.+....+.....
T Consensus 485 ----~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e----~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~ 553 (963)
T 4ady_A 485 ----SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE----T---QHGNITRGLAVGLALINYGRQELADDLITKMLAS 553 (963)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH----C---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC
T ss_pred ----CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc----c---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC
Confidence 1111234566788888888887665555554442 1 1111222234455555677777665554443221
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829 589 FRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEAR 628 (728)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 628 (728)
.++.....+...+|.+|...|+...-..++..+.
T Consensus 554 ------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 554 ------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp ------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 1122223345567788888888654444555544
No 263
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=88.12 E-value=11 Score=36.88 Aligned_cols=86 Identities=20% Similarity=0.138 Sum_probs=62.0
Q ss_pred CCChhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 427 GHELDVASIDCSIGDAYLSLA--RFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI 504 (728)
Q Consensus 427 ~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (728)
+.-.....++.+||.+-...- ....++.+|.+++...+..++..| ...|..+|..+++.+++.+|+..+-.+-..
T Consensus 249 GhL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~H---vYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 249 GHIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHH---IYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp TTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCC---ccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 333444556666766654332 222389999999999999886555 345778899999999999999999999998
Q ss_pred HcCCCCCCCcH
Q 004829 505 YGKPNHGIPSE 515 (728)
Q Consensus 505 ~~~~~~~~~~~ 515 (728)
.+......++.
T Consensus 326 i~~YNY~reDe 336 (472)
T 3re2_A 326 AGKYNYSKDDE 336 (472)
T ss_dssp HTTSCCCGGGH
T ss_pred HHHcCCCccHH
Confidence 87765443333
No 264
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=88.04 E-value=18 Score=34.13 Aligned_cols=183 Identities=11% Similarity=0.076 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHH--cCCCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCC
Q 004829 476 SVFVRLADLYHKIGKLRDSKSYCENALKIY--GKPNHGIPSEEIASGLIDIAAIYQS-MNELEQAVKLLNKALKIYGKTP 552 (728)
Q Consensus 476 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~ 552 (728)
.-+..+|.+....++|++...+++++.... ... . ..-.+.|..+|-. .|....+...+....+-.. ..
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eL-----t---~EERnLLSvaYKNvig~rR~swRiissieqke~-~k 79 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEEL-----T---VEERNLLSVAYKNVIGARRASWRIISSIEQKEE-SR 79 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCC-----C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCC-----C---HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh-cc
Confidence 345678888999999999999999988863 221 1 1122223333321 2333344444433222111 11
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---CCCcHHHHHHHHHHHHHHHHc-----C-----CHHH
Q 004829 553 GQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG---EKKSALFGIALNQMGLACVQR-----Y-----TINE 619 (728)
Q Consensus 553 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~la~~~~~~-----g-----~~~~ 619 (728)
+.... ..+..-|. ..=-.+-..++...+.+..... ..........+-..|..|... | -.+.
T Consensus 80 ~~~~~-----~~~i~~yr-~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~ 153 (260)
T 1o9d_A 80 GNEEH-----VNSIREYR-SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAES 153 (260)
T ss_dssp TCHHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred CcHHH-----HHHHHHHH-HHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHH
Confidence 11100 11111111 1111223344455555544321 111111122222334444322 2 2457
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 004829 620 AADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA-MGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 620 A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~-~g~~~~A~~~~~~al~~~ 673 (728)
|...|++|..+....+.|.||-......+.+..|+. +++.++|..+.++++.-.
T Consensus 154 a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 208 (260)
T 1o9d_A 154 TLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (260)
T ss_dssp HHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 889999999999888999999998888888877665 799999998888776543
No 265
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=87.86 E-value=17 Score=33.71 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHH
Q 004829 617 INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA-MGRIDDAIEILEYVVGMREE 675 (728)
Q Consensus 617 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~-~g~~~~A~~~~~~al~~~~~ 675 (728)
.+.|...|++|.++....+.|.||-......+.+..|+. +++.++|..+.++++.-.-.
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~ 205 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA 205 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 467889999999999888999999998888888877665 89999999998888765443
No 266
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=87.54 E-value=1.6 Score=46.22 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG 671 (728)
Q Consensus 601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 671 (728)
..++..||.+......+..|..+|.+|..+ .|.....+..||.+....|+.-+|+-+|-+++.
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 357788999999999999999999999999 999999999999999999999999999988865
No 267
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=86.32 E-value=21 Score=33.10 Aligned_cols=183 Identities=13% Similarity=0.086 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCCC
Q 004829 477 VFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS-MNELEQAVKLLNKALKIYGKTPGQQ 555 (728)
Q Consensus 477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 555 (728)
-+..+|.+....++|++...+.+++....... ...-.+.|..+|-. .|....+...+....+..... +..
T Consensus 10 ~~v~~AklaeqaeRyddM~~~mk~v~~~~~eL--------s~EERnLLSvaYKNvig~rR~swRiissieqke~~~-~~~ 80 (236)
T 3iqu_A 10 SLIQKAKLAEQAERYEDMAAFMKGAVEKGEEL--------SCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEE-GSE 80 (236)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCcC--------CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhc-CCH
Confidence 45677888999999999999999988763222 12223334444422 344444555554333222111 211
Q ss_pred C--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---CCCcHHHHHHHHHHHHHHHH-----cCC-----HHHH
Q 004829 556 S--TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG---EKKSALFGIALNQMGLACVQ-----RYT-----INEA 620 (728)
Q Consensus 556 ~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~la~~~~~-----~g~-----~~~A 620 (728)
. ....-|. ..+ -.+-...+...+.+..... ...+......+-..|..|.- .|+ .+.|
T Consensus 81 ~~~~~i~~yr--~ki------e~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a 152 (236)
T 3iqu_A 81 EKGPEVREYR--EKV------ETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSA 152 (236)
T ss_dssp CCCSHHHHHH--HHH------HHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHH
T ss_pred HHHHHHHHHH--HHH------HHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHH
Confidence 1 1111111 000 1122334444454443321 11111112222233444432 333 5678
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHH
Q 004829 621 ADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYD-AMGRIDDAIEILEYVVGMREEK 676 (728)
Q Consensus 621 ~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~-~~g~~~~A~~~~~~al~~~~~~ 676 (728)
...|++|.++....+.|.||-......+.+..|+ -+++.++|..+.++|..-.-..
T Consensus 153 ~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai~e 209 (236)
T 3iqu_A 153 RSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMAD 209 (236)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999998899999999888888887766 5799999999988887654333
No 268
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=86.25 E-value=14 Score=36.77 Aligned_cols=91 Identities=14% Similarity=0.137 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829 431 DVASIDCSIGDAYLSLARF--DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP 508 (728)
Q Consensus 431 ~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 508 (728)
....++.+||.+-...--. ..++.+|.+++...+..++..| ..-|..+|-.|++.+++.+|+..+-.+-...+..
T Consensus 275 rYPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~H---vYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~Y 351 (550)
T 3u84_A 275 RYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQDY 351 (550)
T ss_dssp TCHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred hCchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCC---ccceeecchhhhhcchHHHHHHHHHHHHHHHHHc
Confidence 3344555666554432111 2488999999999998886555 3457788999999999999999999999998876
Q ss_pred CCCCCcHHHHHHHHHH
Q 004829 509 NHGIPSEEIASGLIDI 524 (728)
Q Consensus 509 ~~~~~~~~~~~~~~~l 524 (728)
....++.++..-+..+
T Consensus 352 NY~reDeEIYKEf~eI 367 (550)
T 3u84_A 352 NYCREDEEIYKEFFEV 367 (550)
T ss_dssp CCCGGGHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHH
Confidence 6444444443333333
No 269
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.80 E-value=33 Score=34.94 Aligned_cols=131 Identities=8% Similarity=0.030 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----c-------CCChhHHHHHHHH
Q 004829 371 EKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAA----N-------GHELDVASIDCSI 439 (728)
Q Consensus 371 ~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~-------~~~~~~~~~~~~l 439 (728)
+++|+..+.-+.....+ ... ...+..+.....+.++|+++++........ . ........+...+
T Consensus 59 ~~ly~~fi~~f~~kin~--L~l---v~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i 133 (393)
T 4b4t_O 59 LRLYDNFVSKFYDKINQ--LSV---VKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEI 133 (393)
T ss_dssp HHHHHHHHHHHHHHSCS--HHH---HHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCH--HHH---HHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHH
Confidence 44555555555444332 111 112334556678899999998765322111 0 1113345677788
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc
Q 004829 440 GDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYG 506 (728)
Q Consensus 440 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 506 (728)
+..|...|+.++|..+++++-.......+.+.......+...+..|...+++..+....-..+....
T Consensus 134 ~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 134 ARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 9999999999999999999988877764444556677777788888899999988888777777654
No 270
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=84.85 E-value=22 Score=35.62 Aligned_cols=86 Identities=15% Similarity=0.108 Sum_probs=62.9
Q ss_pred CChhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829 428 HELDVASIDCSIGDAYLSLA--RFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIY 505 (728)
Q Consensus 428 ~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 505 (728)
.-.....++.+||.+-...- ....++.+|++|+...+..+...+ ...|..+|-.+++.++|.+|+.++-.+-...
T Consensus 257 hl~~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi 333 (489)
T 4gq4_A 257 HLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVI 333 (489)
T ss_dssp TTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chhhcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhh
Confidence 33444556666666654322 223478899999999999886655 4567888999999999999999999999998
Q ss_pred cCCCCCCCcHH
Q 004829 506 GKPNHGIPSEE 516 (728)
Q Consensus 506 ~~~~~~~~~~~ 516 (728)
........+..
T Consensus 334 ~~YnY~reDeE 344 (489)
T 4gq4_A 334 QDYNYCREDEE 344 (489)
T ss_dssp TTSCCCTTCHH
T ss_pred hhcccccchHH
Confidence 87665544443
No 271
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=84.82 E-value=1.9 Score=45.54 Aligned_cols=63 Identities=17% Similarity=0.136 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 434 SIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI 504 (728)
Q Consensus 434 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (728)
..+..||.+......+..|..+|.+|+.+ .|.....++.||.+....|+.-+|+-+|-+++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 46778999999999999999999999999 9999999999999999999999999999998865
No 272
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=84.28 E-value=28 Score=32.79 Aligned_cols=182 Identities=10% Similarity=0.105 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHH---cCCCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcC
Q 004829 476 SVFVRLADLYHKIGKLRDSKSYCENALKIY---GKPNHGIPSEEIASGLIDIAAIYQS-MNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 476 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~ 551 (728)
.-+..+|.+....++|++...+.+++.... ... ...-.+.|..+|-. .|....+...+....+-.. .
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eL--------t~EERnLLSvAyKNvIg~rR~swRiissieqke~-~ 99 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEEL--------TVEERNLLSVAYKNAVGSRRSSWRIISSVEQKEH-S 99 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCC--------CHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhh-c
Confidence 445677888889999999999999988852 111 11222333333322 2333334443332221111 1
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---CCCcHHHHHHHHHHHHHHHHc----------CCHH
Q 004829 552 PGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG---EKKSALFGIALNQMGLACVQR----------YTIN 618 (728)
Q Consensus 552 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~la~~~~~~----------g~~~ 618 (728)
.+.... ..+..-| +..=-.+-...+...+.+..... ...+......+-..|..|... .-.+
T Consensus 100 k~~~~~-----~~~i~~y-r~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e 173 (260)
T 2npm_A 100 RNAEDA-----SKMCGKY-RSKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAE 173 (260)
T ss_dssp TTCHHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cCcHHH-----HHHHHHH-HHHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHH
Confidence 111100 0111111 11111222334445555444321 111111122222234333321 1246
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 004829 619 EAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA-MGRIDDAIEILEYVVGMR 673 (728)
Q Consensus 619 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~-~g~~~~A~~~~~~al~~~ 673 (728)
.|...|++|.++. ..+.+.||-......+.+..|+. +++.++|..+.++|..-.
T Consensus 174 ~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 228 (260)
T 2npm_A 174 DALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMA 228 (260)
T ss_dssp HHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7889999999999 77899999998888888877765 899999999988887644
No 273
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=84.18 E-value=6 Score=30.22 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004829 221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCL 269 (728)
Q Consensus 221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~ 269 (728)
.+..+...|...-..| +|++|+.+|..++..+-......+++..-..+
T Consensus 15 ~A~~lv~~Ave~D~~g-~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~l 62 (86)
T 4a5x_A 15 AAATVLKRAVELDSES-RYPQALVCYQEGIDLLLQVLKGTKDNTKRCNL 62 (86)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 3556778888888887 99999999999999987776666666543333
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.39 E-value=12 Score=33.61 Aligned_cols=115 Identities=8% Similarity=-0.007 Sum_probs=78.2
Q ss_pred CCCC-ChHHHHHHHHHHHHHcCCCH-H-HHH-HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 004829 216 LGNP-ALGPFLLKQTREMISSGENP-Q-KAL-ELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLER 291 (728)
Q Consensus 216 ~~~p-~~~~~l~~~a~~~~~~g~~~-~-~A~-~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 291 (728)
.+|| +....+.......+-.|+.. + .-+ .++++++..+.....=.+++....+|...+..+ ..+...++..+|..
T Consensus 26 ~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~ 104 (202)
T 3esl_A 26 MDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKY 104 (202)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHH
Confidence 4555 34444555555555555221 2 233 688888888776655556677777777777765 23446688888887
Q ss_pred hhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829 292 SVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEI 338 (728)
Q Consensus 292 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 338 (728)
+... ..|...+.. |...|..+...|++.+|..+|+.+++.
T Consensus 105 L~~~---~IG~~~Alf----Ye~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 105 MFNK---GIGTKLSLF----YEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHH---TSSTTBHHH----HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHC---CCcHHHHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6543 345555543 889999999999999999999999886
No 275
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.96 E-value=43 Score=34.01 Aligned_cols=134 Identities=13% Similarity=-0.009 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcC--------CchhHhHHHHHHH
Q 004829 243 LELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDG--------QDHALAKFAGCMQ 314 (728)
Q Consensus 243 ~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~~ 314 (728)
+.+|+..+.-+..-.+ ....+. .+..+.....+.++|++++++.......... ..+....+.+...
T Consensus 59 ~~ly~~fi~~f~~kin---~L~lv~---~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~ 132 (393)
T 4b4t_O 59 LRLYDNFVSKFYDKIN---QLSVVK---YLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSE 132 (393)
T ss_dssp HHHHHHHHHHHHHHSC---SHHHHH---TTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC---HHHHHH---HHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHH
Confidence 4566666665554321 111221 1344556678899999999876554321111 1122334556788
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829 315 LGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHR 382 (728)
Q Consensus 315 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 382 (728)
++..|...|+.+.|..+++++-......-+.+.......+...+..|...++|..+...+-..+....
T Consensus 133 i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 133 IARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 99999999999999999999987766543333334555666677788888999887776666665443
No 276
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.38 E-value=39 Score=33.00 Aligned_cols=188 Identities=12% Similarity=-0.029 Sum_probs=107.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchh
Q 004829 226 LKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHA 305 (728)
Q Consensus 226 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 305 (728)
...-...+..| +|=+|.+.|+-....+.+. ....+....++.-+..+.+.|++..|..+..-.++.......+...
T Consensus 17 l~rl~~~I~~G-~yYEAhQ~~Rtl~~Ry~~~---~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~ 92 (312)
T 2wpv_A 17 LQRFENKIKAG-DYYEAHQTLRTIANRYVRS---KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDD 92 (312)
T ss_dssp HHHHHHHHHHT-CHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSH
T ss_pred HHHHHHHhhcc-ChHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH
Confidence 33444555665 7777777777666554442 2334555666667777788888888877766666655433222221
Q ss_pred HhHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-------
Q 004829 306 LAKFAGCMQLGDTYAMLGQIE-NSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMA------- 377 (728)
Q Consensus 306 ~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------- 377 (728)
. ....+..++.....-+ .=..+..+++....+. ++..-.....+..+|..|...+++.+|..+|-..
T Consensus 93 ~----~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~ 167 (312)
T 2wpv_A 93 I----SVARLVRLIAELDPSEPNLKDVITGMNNWSIKF-SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIK 167 (312)
T ss_dssp H----HHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHH
T ss_pred H----HHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHH
Confidence 1 2445555554433211 2356677777776553 2222234567888999999999999998877321
Q ss_pred -----HHHHHHcCCCCcHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 378 -----LDIHRENTSPASIEEAADRR-LMGLICDSKGDYEAALEHYVLASMSM 423 (728)
Q Consensus 378 -----l~~~~~~~~~~~~~~a~~~~-~lg~~~~~~g~~~~A~~~~~~al~~~ 423 (728)
.+....... ........+. .....|...|+...|...+..-....
T Consensus 168 ~a~~l~~w~~~~~~-~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 168 YVDLLWDWLCQVDD-IEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 112222100 1122222222 23345667899999988887665444
No 277
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=81.74 E-value=35 Score=32.05 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHH
Q 004829 450 DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK-IGKLRDSKSYCENALKI 504 (728)
Q Consensus 450 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 504 (728)
+.|...|++|.++....+.+.+|-......+.+..|+. +++.++|....++|.+-
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~ 228 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 228 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67889999999999888888899888888888887776 69999998888877664
No 278
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=80.82 E-value=27 Score=30.27 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HHHH------
Q 004829 312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALD--IHRE------ 383 (728)
Q Consensus 312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~------ 383 (728)
-+.++.+++..|.|..|+-++. .-+...+.+.-+.||....+|..|+..++..+. +.++
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L~-------------~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~ 102 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHLH-------------KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR 102 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH-------------TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH
T ss_pred HhhhhhhhhhcchHhHHHHHHH-------------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc
Confidence 4567788888999998877654 234556677788899999999999999999882 1111
Q ss_pred --cCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 384 --NTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASM 421 (728)
Q Consensus 384 --~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 421 (728)
..-.+....--.+..+|.++.+.|+.++|+.+|.....
T Consensus 103 ~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 103 IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 00001112233577899999999999999999987643
No 279
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=78.51 E-value=41 Score=30.88 Aligned_cols=182 Identities=14% Similarity=0.073 Sum_probs=93.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcCCChhHHH
Q 004829 356 YVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDS-KGDYEAALEHYVLASMSMAANGHELDVAS 434 (728)
Q Consensus 356 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 434 (728)
.+|.+..+.++|++...+.+++...+......-... -.+.|..+|-. .|....+...+.... .-. .++..
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eLt~E---ERnLLSvAYKNvig~rR~swRiissiE-qke-k~~~~---- 81 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDE---ERHLLTLCIKHKISDYRTMTSQVLQEQ-TKQ-LNNDE---- 81 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHS-CSCHH----
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCCCHH---HHHHHHHHHHHhhcccHHHHHHHHHHH-HHH-cCCHH----
Confidence 678888999999999999999887311111111111 12333333321 122222222222111 000 11111
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHHHcCCC
Q 004829 435 IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK-----IGKLRDSKSYCENALKIYGKPN 509 (728)
Q Consensus 435 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~ 509 (728)
...+..-|.. .--.+=...+...+.+....+-+.....+..+-..|..|.. .|+.+.|...|+.|.++.....
T Consensus 82 -~~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L 159 (227)
T 2o8p_A 82 -LVKICSEYVF-SLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHP 159 (227)
T ss_dssp -HHHHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCG
T ss_pred -HHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhC
Confidence 1111111111 11123344566677776665543322223333344555543 4668899999999999987544
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829 510 HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY 548 (728)
Q Consensus 510 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 548 (728)
++.++-....+++.-...|.-+++.++|..+.++|+.+.
T Consensus 160 ~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 160 DKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp GGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 232232344444444445567899999999999997753
No 280
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=78.37 E-value=7.1 Score=29.57 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhc
Q 004829 221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICAN 258 (728)
Q Consensus 221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~ 258 (728)
.+..+...|...-..| +|++|+.+|.+++..+.....
T Consensus 18 ~Ai~lv~~Ave~D~~g-~y~eAl~lY~~aie~l~~alk 54 (83)
T 2w2u_A 18 MARKYAINAVKADKEG-NAEEAITNYKKAIEVLAQLVS 54 (83)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHH
Confidence 3455777888888887 999999999999998776543
No 281
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=77.70 E-value=7.8 Score=29.35 Aligned_cols=43 Identities=12% Similarity=0.041 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChh
Q 004829 221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLE 264 (728)
Q Consensus 221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~ 264 (728)
.+..+...|...-..| +|++|+.+|.+++..+.......+++.
T Consensus 10 ~Ai~lv~~Ave~D~~g-~y~eAl~lY~~aie~l~~~lk~e~d~~ 52 (83)
T 2v6y_A 10 MARKYAILAVKADKEG-KVEDAITYYKKAIEVLSQIIVLYPESV 52 (83)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 3456778888888887 999999999999998876543333333
No 282
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=77.63 E-value=13 Score=28.85 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004829 221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLH 270 (728)
Q Consensus 221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 270 (728)
.+..+...|...-..| +|++|+.+|..++..+.......+++..-..+.
T Consensus 14 ~Ai~lv~~Ave~D~~g-~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~ 62 (93)
T 1wfd_A 14 AAVAVLKRAVELDAES-RYQQALVCYQEGIDMLLQVLKGTKESSKRCVLR 62 (93)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4556788888888886 999999999999999887765555555444333
No 283
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=75.83 E-value=12 Score=28.45 Aligned_cols=48 Identities=6% Similarity=0.029 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004829 221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCL 269 (728)
Q Consensus 221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~ 269 (728)
.+..+...|...-..| +|++|+.+|..++..+.......+++..-..+
T Consensus 12 ~A~~l~~~Av~~D~~g-~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l 59 (85)
T 2v6x_A 12 KGIELVQKAIDLDTAT-QYEEAYTAYYNGLDYLMLALKYEKNPKSKDLI 59 (85)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4566778888888886 99999999999999876654444444443333
No 284
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=75.26 E-value=53 Score=30.60 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHH
Q 004829 450 DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK-IGKLRDSKSYCENALKI 504 (728)
Q Consensus 450 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 504 (728)
+.|...|+.|.++....+.+.||-......+.+..|+. +++.++|....++|.+-
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~ 203 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDD 203 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67889999999999888888899888888888877776 78999998888877664
No 285
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=75.25 E-value=24 Score=26.86 Aligned_cols=40 Identities=10% Similarity=0.175 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 004829 221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKP 261 (728)
Q Consensus 221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~ 261 (728)
.+..+-..+..+...| .|++||++.++|..++........
T Consensus 14 ~AH~~~RrAe~ll~~g-kydeAIech~kAa~yL~eAmkltq 53 (97)
T 2crb_A 14 LAHQQSRRADRLLAAG-KYEEAISCHRKATTYLSEAMKLTE 53 (97)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhhHhhhHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5667888999999997 999999999999988766654443
No 286
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.05 E-value=12 Score=35.57 Aligned_cols=119 Identities=8% Similarity=-0.051 Sum_probs=79.1
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 004829 319 YAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRL 398 (728)
Q Consensus 319 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~ 398 (728)
....|.+++|+......++. .|..+.....+.++++-.|++++|...++.+.++.+... ..+..|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~-----~~a~~yr~ 73 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL-----PGASQLRH 73 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH-----HHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh-----HHHHHHHH
Confidence 45678999999999988887 888889999999999999999999999999988876542 11212222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhc-----CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829 399 MGLICDSKGDYEAALEHYVLASMSMAAN-----GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAF 463 (728)
Q Consensus 399 lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 463 (728)
+..+- . ++. ..+... -..+........-+......|+.++|...-.++++..
T Consensus 74 lI~aE----------~-~R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 74 LVKAA----------Q-ARK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp HHHHH----------H-HHH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHH----------H-HHH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 11110 0 000 111110 0112223344455666777899999999999998873
No 287
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=74.79 E-value=50 Score=32.40 Aligned_cols=71 Identities=24% Similarity=0.218 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004829 601 GIALNQMGLACVQRY--TINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMRE 674 (728)
Q Consensus 601 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~ 674 (728)
+.++.+||.+-...- ....++.+|.+|+...+..++..|.. -|..+|..+++.+++.+|+..+-.+-.+.+
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvY---PYtylgGy~yR~~~~reAl~~WA~Aa~Vi~ 327 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIY---PYTYLGGYYYRKKKYYEAIASWVDAGYVAG 327 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCcc---chhhhhhhhhhcchHHHHHHHHHHHHHHHH
Confidence 345556665544332 22338899999999999888766543 577889999999999999999999887654
No 288
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=74.08 E-value=8.2 Score=28.69 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCCh
Q 004829 223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSL 263 (728)
Q Consensus 223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~ 263 (728)
.-...+|+.+...| +|+.|+.+|+.+++...+....-.+|
T Consensus 13 ~e~~k~ARe~Al~G-nYdta~~yY~g~~~qI~k~l~~~~d~ 52 (78)
T 2rpa_A 13 VENVKLAREYALLG-NYDSAMVYYQGVLDQMNKYLYSVKDT 52 (78)
T ss_dssp HHHHHHHHHHHHHT-CCHHHHHHHHHHHHHHHHHHHTCSCH
T ss_pred HHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 34577899999998 99999999999999887775544443
No 289
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=73.94 E-value=60 Score=30.55 Aligned_cols=55 Identities=11% Similarity=0.218 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHH
Q 004829 450 DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK-IGKLRDSKSYCENALKI 504 (728)
Q Consensus 450 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 504 (728)
+.|...|+.|+++....+.+.||-......+.+..|+. +++.++|..+.+++.+-
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 57889999999999888888899888888888877776 69999999888877654
No 290
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=72.06 E-value=16 Score=31.74 Aligned_cols=112 Identities=12% Similarity=0.079 Sum_probs=69.4
Q ss_pred cCCCCCC-hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 004829 214 AGLGNPA-LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERS 292 (728)
Q Consensus 214 ~~~~~p~-~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 292 (728)
...++|- ....+.......+-.|+.-..-..++++++..+.....=.+++....++...+... +++..+|..+
T Consensus 13 ~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L 86 (164)
T 2wvi_A 13 YTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYL 86 (164)
T ss_dssp CCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHH
Confidence 3455663 33444544444444442111235677777777655444445677777776666553 4466666665
Q ss_pred hhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829 293 VEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEI 338 (728)
Q Consensus 293 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 338 (728)
... ..|...+.. |...|..+...|++.+|..+|+.+++.
T Consensus 87 ~~~---~IG~~~Alf----Y~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 87 HNQ---GIGVSLAQF----YISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHT---TSSTTBHHH----HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHC---CcchhhHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 432 344555443 889999999999999999999999886
No 291
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=71.85 E-value=17 Score=29.58 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHH
Q 004829 221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGK-PSLEQVMCLHVLAAIH 276 (728)
Q Consensus 221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~-~~~~~~~~~~~la~~~ 276 (728)
.+..+...|...-..| +|++|+.+|..|+.+|....... .++..-..+.....-|
T Consensus 17 kAi~lv~~Ave~D~ag-~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eY 72 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAG-NYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEY 72 (117)
T ss_dssp HHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 4556777887787886 99999999999999887765433 3444333343333333
No 292
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=71.69 E-value=57 Score=29.32 Aligned_cols=87 Identities=8% Similarity=0.017 Sum_probs=65.0
Q ss_pred HHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCH
Q 004829 496 SYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNY 575 (728)
Q Consensus 496 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 575 (728)
.++++++..+.....-.+++....+|...+..+ ..+...++...|.-.... +.-...+..|...|..+...|++
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~-----~IG~~~AlfYe~wA~~lE~~g~~ 131 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK-----GIGTKLSLFYEEFSKLLENAQFF 131 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH-----TSSTTBHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHHHcCCH
Confidence 578888888776443356778888888888766 234456777777765543 33344577888899999999999
Q ss_pred HHHHHHHHHHHHH
Q 004829 576 SDSYNTLKSAISK 588 (728)
Q Consensus 576 ~~A~~~~~~al~~ 588 (728)
.+|...|+.+++.
T Consensus 132 ~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 132 LEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999875
No 293
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=70.26 E-value=73 Score=29.96 Aligned_cols=182 Identities=16% Similarity=0.143 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH---HHcCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcC
Q 004829 352 ETCRYVAEAHVQSLQFDEAEKICQMALDIH---RENTSPASIEEAADRRLMGLICDS-KGDYEAALEHYVLASMSMAANG 427 (728)
Q Consensus 352 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~ 427 (728)
.-+..+|.+..+.++|++...+.+++.... +... .. -.+.|..+|-. .|....+...+... +.-....
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt----~E---ERnLLSvAyKNvIg~rR~swRiissi-eqke~~k 100 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELT----VE---ERNLLSVAYKNAVGSRRSSWRIISSV-EQKEHSR 100 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCC----HH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCC----HH---HHHHHHHHHHHHhccchHHHHHHHHH-HHHhhcc
Confidence 445567888889999999999999888743 2211 11 12333333322 12222333332221 1111110
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC--CCHH-HHHHHHHHHHHHHHcCC----------hHHH
Q 004829 428 HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGE--NHPA-VASVFVRLADLYHKIGK----------LRDS 494 (728)
Q Consensus 428 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~-~~~~~~~la~~~~~~g~----------~~~A 494 (728)
..... ..+..-| +..--.+=...+...+.+....+-+ ..+. .+..+-..|..|..+-. .+.|
T Consensus 101 ~~~~~----~~~i~~y-r~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a 175 (260)
T 2npm_A 101 NAEDA----SKMCGKY-RSKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDA 175 (260)
T ss_dssp TCHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CcHHH----HHHHHHH-HHHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHH
Confidence 11110 1111111 1111122334445555554443211 1222 22223334555543322 3578
Q ss_pred HHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHH
Q 004829 495 KSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQ-SMNELEQAVKLLNKALKIY 548 (728)
Q Consensus 495 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 548 (728)
...|+.|.++. ... .+.+|-......+.+..|+ -+++.++|..+.++|+.-.
T Consensus 176 ~~aY~~A~~iA-~~L-~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 228 (260)
T 2npm_A 176 LKAYKDATVVA-KDL-EPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMA 228 (260)
T ss_dssp HHHHHHHHHHH-TTS-CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhC-CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 89999999999 544 4455655555555555555 4899999998888777654
No 294
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=69.92 E-value=69 Score=32.11 Aligned_cols=70 Identities=16% Similarity=0.110 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004829 602 IALNQMGLACVQRYT--INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMRE 674 (728)
Q Consensus 602 ~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~ 674 (728)
.++.+||.+-...-- ...++.+|.+|+...+..++..|.. -|..+|..+++.+++.+|+..+-.+-.+.+
T Consensus 278 mALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvY---PYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~ 349 (550)
T 3u84_A 278 MALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIY---PYMYLAGYHCRNRNVREALQAWADTATVIQ 349 (550)
T ss_dssp HHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred hhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCcc---ceeecchhhhhcchHHHHHHHHHHHHHHHH
Confidence 455555554443211 1248889999999998888766543 577889999999999999999999887653
No 295
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=67.17 E-value=47 Score=28.38 Aligned_cols=84 Identities=10% Similarity=0.048 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcC
Q 004829 494 SKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTG 573 (728)
Q Consensus 494 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 573 (728)
=..++++++..+.....-.+++....+|...+... . ++...|.-... . +.-...+..|...|..+...|
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~---dp~~if~~L~~---~--~IG~~~AlfYe~wA~~lE~~g 115 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN---S---DLHQFFEFLYN---H--GIGTLSSPLYIAWAGHLEAQG 115 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---S---CHHHHHHHHHT---T--TTTTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc---C---CHHHHHHHHHH---C--CCcHHHHHHHHHHHHHHHHcC
Confidence 44677788877755332345677777777777653 2 25555554332 2 333445778888999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 004829 574 NYSDSYNTLKSAISK 588 (728)
Q Consensus 574 ~~~~A~~~~~~al~~ 588 (728)
++.+|...|+.+++.
T Consensus 116 ~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 116 ELQHASAVLQRGIQN 130 (152)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999875
No 296
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=66.95 E-value=80 Score=29.18 Aligned_cols=56 Identities=13% Similarity=0.159 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHH
Q 004829 449 FDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK-IGKLRDSKSYCENALKI 504 (728)
Q Consensus 449 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 504 (728)
.+.|...|+.|.++....+.+.||-......+.+..|+. +++.++|....++|.+-
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~ 205 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE 205 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 367889999999999888888899888888888877775 68999998887777654
No 297
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=65.76 E-value=92 Score=29.45 Aligned_cols=121 Identities=8% Similarity=-0.023 Sum_probs=76.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004829 568 MYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYS 647 (728)
Q Consensus 568 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 647 (728)
-+++.|++++|+..+...++. .|..+.....+..+++-.|+++.|..-++.+.++ +|......
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--------~p~~~~~a- 68 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--------FPEYLPGA- 68 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CGGGHHHH-
T ss_pred HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhhHHH-
Confidence 356778999999888888775 4445667777888899999999999999999888 77643321
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHc-C------CCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccc
Q 004829 648 NLAGTYDAMGRIDDAIEILEYVVGMREEKL-G------TANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN 719 (728)
Q Consensus 648 ~La~~~~~~g~~~~A~~~~~~al~~~~~~~-~------~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~ 719 (728)
..|.. ++ ++-..+.+++ | ...|........-+......|+.++|. .....+++..|..
T Consensus 69 ---~~yr~------lI----~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~-~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 69 ---SQLRH------LV----KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS-ELALQIEELRQEK 133 (273)
T ss_dssp ---HHHHH------HH----HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCCCC
T ss_pred ---HHHHH------HH----HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHH-HHHHHHHhcCccc
Confidence 11211 11 1111222222 1 112333333444456667789999999 7777777765543
No 298
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=65.37 E-value=1.6e+02 Score=31.96 Aligned_cols=194 Identities=11% Similarity=-0.014 Sum_probs=107.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHH
Q 004829 481 LADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAG 560 (728)
Q Consensus 481 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 560 (728)
++.......+.+.|...+....... . .+..........++.-+...+...++...+.+... .. . ....
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~-~----~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~-~-~~~~-- 287 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQ-Q----LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RS-Q-STSL-- 287 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHT-T----CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TC-C-CHHH--
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhcc-C----CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cC-C-ChHH--
Confidence 3334444457788888877665432 1 12344444555555555555534455666665332 11 1 1111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHH
Q 004829 561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEART-------ILEK 633 (728)
Q Consensus 561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~~~ 633 (728)
.. .++...+..|++..|..+|...-. .........+.+|.++...|+.++|..+|+++.. +...
T Consensus 288 ~e-~~~r~Alr~~d~~~a~~~~~~l~~--------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~ 358 (618)
T 1qsa_A 288 IE-RRVRMALGTGDRRGLNTWLARLPM--------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQ 358 (618)
T ss_dssp HH-HHHHHHHHHTCHHHHHHHHHHSCT--------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHH
T ss_pred HH-HHHHHHHHCCCHHHHHHHHHHccc--------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHH
Confidence 11 222334466888888877754422 1122356778888888888888888888887654 1112
Q ss_pred hcCCC--------Ch---h--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCC
Q 004829 634 EYGPY--------HH---D--TLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR 700 (728)
Q Consensus 634 ~~~~~--------~~---~--~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 700 (728)
.+|.. .+ . ........+..+...|....|...+...+. ...+ .....++.+....|.
T Consensus 359 ~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~-------~~~~---~~~~~la~~a~~~~~ 428 (618)
T 1qsa_A 359 RIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK-------SKSK---TEQAQLARYAFNNQW 428 (618)
T ss_dssp HTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCCH---HHHHHHHHHHHHTTC
T ss_pred HcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh-------cCCH---HHHHHHHHHHHHCCC
Confidence 22210 00 0 111234556778888999999887776654 1122 223456777777888
Q ss_pred hhHHH
Q 004829 701 VRNRK 705 (728)
Q Consensus 701 ~~~A~ 705 (728)
++.++
T Consensus 429 ~~~~v 433 (618)
T 1qsa_A 429 WDLSV 433 (618)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 87776
No 299
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=65.17 E-value=82 Score=31.64 Aligned_cols=72 Identities=14% Similarity=0.090 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004829 601 GIALNQMGLACVQRY--TINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREE 675 (728)
Q Consensus 601 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~ 675 (728)
+.++.+||.+-...- ....++.+|++|+...+..+...|- --|..+|..+.+.+++.+|+.++..+..+...
T Consensus 262 PmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hv---YPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~ 335 (489)
T 4gq4_A 262 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQD 335 (489)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred chhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcc---cceeecchHHHHhhhHHHHHHHhhhhhhhhhh
Confidence 345555555544322 1234678999999999998876653 36778899999999999999999998776543
No 300
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=63.98 E-value=29 Score=30.13 Aligned_cols=83 Identities=11% Similarity=0.162 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCC
Q 004829 495 KSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGN 574 (728)
Q Consensus 495 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 574 (728)
..++++++..+.....-.+++....+|...+... ++ +...|..... . +.-...+..|...|..+...|+
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~---~--~IG~~~AlfY~~wA~~lE~~~~ 111 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHN---Q--GIGVSLAQFYISWAEEYEAREN 111 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHH---T--TSSTTBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHH---C--CcchhhHHHHHHHHHHHHHcCC
Confidence 4567777777655432345777888888777664 33 4445544332 2 3334457788889999999999
Q ss_pred HHHHHHHHHHHHHH
Q 004829 575 YSDSYNTLKSAISK 588 (728)
Q Consensus 575 ~~~A~~~~~~al~~ 588 (728)
+.+|...|+.+++.
T Consensus 112 ~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 112 FRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999875
No 301
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=63.96 E-value=17 Score=34.25 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHH
Q 004829 617 INEAADLFEEARTILEKEY--GPYHHDTLGVYSNLAGTYD-AMGRIDDAIEILEYVVGM 672 (728)
Q Consensus 617 ~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~La~~~~-~~g~~~~A~~~~~~al~~ 672 (728)
.+.|...|++|.++....+ .|.||-......+.+..|+ -+++.++|..+.++|..-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4678899999999998888 8899999888888888776 589999999999998875
No 302
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=63.18 E-value=25 Score=30.04 Aligned_cols=108 Identities=10% Similarity=0.047 Sum_probs=67.3
Q ss_pred CCCC-ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhh
Q 004829 216 LGNP-ALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVE 294 (728)
Q Consensus 216 ~~~p-~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 294 (728)
.+|| +....+.......+-.| . ..-..++++++..+.....=.+++.....+...+.. ..++..+|..+..
T Consensus 22 gdDPL~~w~~YI~W~e~~~P~g-~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~------~~dp~~if~~L~~ 93 (152)
T 4a1g_A 22 GNDPLGEWERYIQWVEENFPEN-K-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY------NSDLHQFFEFLYN 93 (152)
T ss_dssp SSCHHHHHHHHHHHHHTTCSSC-T-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT------BSCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHcCCC-c-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh------cCCHHHHHHHHHH
Confidence 4455 22333343444334444 2 335566777777765544344556666666555543 3457777776554
Q ss_pred hhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829 295 IPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEI 338 (728)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 338 (728)
. ..|...+.. |...|..+...|++.+|..+|+.+++.
T Consensus 94 ~---~IG~~~Alf----Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 94 H---GIGTLSSPL----YIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp T---TTTTTBHHH----HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred C---CCcHHHHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3 344555443 889999999999999999999999876
No 303
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=62.00 E-value=83 Score=29.63 Aligned_cols=74 Identities=18% Similarity=0.073 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHHH-HhCCHHHHHHH
Q 004829 307 AKFAGCMQLGDTYAMLGQ----------IENSILCYTAGLEIQRQVL--GETDHRVGETCRYVAEAHV-QSLQFDEAEKI 373 (728)
Q Consensus 307 ~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~ 373 (728)
..+..+-..|..|..+-. .+.|...|+.|.++....+ .+.+|-......+.+..|+ -.++.++|..+
T Consensus 140 skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~l 219 (268)
T 3efz_A 140 ARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKF 219 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344445566777765422 4678899999999998777 7888877777777777666 57899999999
Q ss_pred HHHHHHH
Q 004829 374 CQMALDI 380 (728)
Q Consensus 374 ~~~al~~ 380 (728)
.++|++-
T Consensus 220 Ak~AFde 226 (268)
T 3efz_A 220 ANRAIQA 226 (268)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9998875
No 304
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=61.14 E-value=52 Score=25.10 Aligned_cols=40 Identities=13% Similarity=0.010 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004829 597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG 636 (728)
Q Consensus 597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 636 (728)
+...+..+...+..+...|+|++|+++.++|...+.....
T Consensus 11 pLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmk 50 (97)
T 2crb_A 11 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMK 50 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888999999999999999999999987665443
No 305
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=59.17 E-value=83 Score=28.78 Aligned_cols=84 Identities=5% Similarity=-0.010 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcC
Q 004829 494 SKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTG 573 (728)
Q Consensus 494 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 573 (728)
=..++++++..+.....-.+++....+|...+.. .. .+...|.-... . +.-...+..|...|..+...|
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~---~~---~p~~if~~L~~---~--~IG~~~AlfYe~wA~~lE~~g 164 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY---ID---EPVELFSFLAH---H--HIGQESSIFYEEYANYFESRG 164 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT---CS---CHHHHHHHHHH---T--TCSTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc---cC---CHHHHHHHHHH---C--CcchhHHHHHHHHHHHHHHcC
Confidence 4578888888876643334577778888777763 22 44455554332 2 333445778888999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 004829 574 NYSDSYNTLKSAISK 588 (728)
Q Consensus 574 ~~~~A~~~~~~al~~ 588 (728)
++.+|...|+.+++.
T Consensus 165 ~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 165 LFQKADEVYQKGKRM 179 (223)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999875
No 306
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=56.58 E-value=33 Score=31.46 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=72.4
Q ss_pred CCCC-ChHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhh
Q 004829 216 LGNP-ALGPFLLKQTREMISSGENP-QKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSV 293 (728)
Q Consensus 216 ~~~p-~~~~~l~~~a~~~~~~g~~~-~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 293 (728)
.+|| +....+.......+-.|+.. ..-..++++++..+.....=.+++....+|...+.. .+++..+|..+.
T Consensus 68 ~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~ 141 (223)
T 4aez_C 68 LDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLA 141 (223)
T ss_dssp SSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHH
Confidence 4566 34445566566666555321 224577788887776554445566666666665552 246667776654
Q ss_pred hhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829 294 EIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEI 338 (728)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 338 (728)
.. ..|...+.. |...|..+...|++.+|..+|+.+++.
T Consensus 142 ~~---~IG~~~Alf----Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 142 HH---HIGQESSIF----YEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp HT---TCSTTBHHH----HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HC---CcchhHHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 33 344555443 889999999999999999999999987
No 307
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=55.42 E-value=60 Score=33.61 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCC---------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---hCCCCcHHHH
Q 004829 534 LEQAVKLLNKALKIYGKTPGQ---------QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT---SGEKKSALFG 601 (728)
Q Consensus 534 ~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~ 601 (728)
.+++...+.++.......... ......+.+.+-.+|++.++...+...++..-.. .. ...-......
T Consensus 142 le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~-~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 142 LSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPK-SMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHH-CCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC-CCCcChhhCCccceE
Confidence 455556666666654432111 1122233455668999999999998887544332 11 1111223457
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH
Q 004829 602 IALNQMGLACVQRYTINEAADLFEEARTI-LE 632 (728)
Q Consensus 602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~ 632 (728)
..++.+|..+...++|.+|.+.+..|+.. +.
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp 252 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLN 252 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCC
Confidence 78899999999999999999999999987 44
No 308
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=54.27 E-value=29 Score=29.97 Aligned_cols=73 Identities=5% Similarity=-0.131 Sum_probs=50.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC
Q 004829 355 RYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADR-RLMGLICDSKGDYEAALEHYVLASMSMAANG 427 (728)
Q Consensus 355 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 427 (728)
+.-+..++..|+|-+|-+.++.+....+..........+.+. ...|..+...|+..-|...+.+++..+....
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~ 109 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVP 109 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 445566777899999999998877543221111223444455 5567777889999999999999988765544
No 309
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=53.92 E-value=45 Score=27.89 Aligned_cols=54 Identities=13% Similarity=0.085 Sum_probs=38.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829 610 ACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG 671 (728)
Q Consensus 610 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 671 (728)
.+..+|+.++-.+.+...+.- .+-.+..+..+|.+|.+.|+..+|.+++.+|.+
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n--------~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKN--------NEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHhHHHHHHHHHhcc--------CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 344566666655555443221 333355789999999999999999999999987
No 310
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=53.81 E-value=70 Score=24.21 Aligned_cols=43 Identities=14% Similarity=0.020 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC-CCChHHHHHH
Q 004829 646 YSNLAGTYDAMGRIDDAIEILEYVVGMREEKLG-TANPDVEDEK 688 (728)
Q Consensus 646 ~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~p~~~~~~ 688 (728)
+...|.-+...|++++|+.+|..+++.+-..+. ..+|.....+
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~l 62 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNL 62 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 344455567889999999999999998876653 4455443433
No 311
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=53.80 E-value=67 Score=33.25 Aligned_cols=99 Identities=11% Similarity=0.043 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHcC--CCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhcCCC
Q 004829 477 VFVRLADLYHKIGKLRDSKSYCENALKIYGK--PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI-YGKTPG 553 (728)
Q Consensus 477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~ 553 (728)
....|-.+|++.++..-+...++..-.. .. ..........+..++.+|.++...++|.+|.+.+..|+.. ++...+
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~-~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~ 256 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPK-SMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLT 256 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHH-CCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccC-CCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcccc
Confidence 4455678899999999999888654333 21 0111234567888999999999999999999999999998 775422
Q ss_pred C---CCcHHHHHHHHHHHHHHcCCHH
Q 004829 554 Q---QSTIAGIEAQMGVMYYMTGNYS 576 (728)
Q Consensus 554 ~---~~~~~~~~~~la~~~~~~g~~~ 576 (728)
. ......++..+.-+-.-+|++.
T Consensus 257 ~~~~~~n~~~ILkyLIpv~LLlG~~P 282 (455)
T 3t5v_B 257 NQAITRNGTRILNYMIPTGLILGKMV 282 (455)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred chhhhhHHHHHHHHHHHHHHHcCCCC
Confidence 1 1122334444444555567654
No 312
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=53.40 E-value=2.5e+02 Score=30.55 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHH--HHcCCHHHHHHHHHH
Q 004829 517 IASGLIDIAAIY--QSMNELEQAVKLLNK 543 (728)
Q Consensus 517 ~~~~~~~la~~~--~~~g~~~~A~~~~~~ 543 (728)
....+..+..++ +..|+++.|+..+++
T Consensus 535 t~~lLl~l~~f~~~~~~g~~~~AL~~i~~ 563 (661)
T 2qx5_A 535 ICMLLLNISSIRELYFNKQWQETLSQMEL 563 (661)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 445556666665 789999999987776
No 313
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=50.56 E-value=91 Score=25.21 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=31.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHcC-C-CChHHHHHHHHHHHHH
Q 004829 649 LAGTYDAMGRIDDAIEILEYVVGMREEKLG-T-ANPDVEDEKRRLAELL 695 (728)
Q Consensus 649 La~~~~~~g~~~~A~~~~~~al~~~~~~~~-~-~~p~~~~~~~~La~~~ 695 (728)
.|.-....|+|++|+.+|..+++++...+. . .++.....+.....-|
T Consensus 24 ~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eY 72 (117)
T 2cpt_A 24 KAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEY 72 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 334456679999999999999998877653 2 4555444444443333
No 314
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=50.17 E-value=62 Score=24.36 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=28.2
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 004829 220 ALGPFLLKQTREMISSGENPQKALELAKRAMKS 252 (728)
Q Consensus 220 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~ 252 (728)
..++.+...|..++..| +|.+|+.+++++...
T Consensus 51 ~~~r~~i~eak~~y~~~-ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETA-NYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhc-chhHHHHHHHHHHcc
Confidence 45778899999999997 999999999999864
No 315
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=46.27 E-value=98 Score=23.76 Aligned_cols=42 Identities=19% Similarity=0.046 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC-CCChHHHHHH
Q 004829 647 SNLAGTYDAMGRIDDAIEILEYVVGMREEKLG-TANPDVEDEK 688 (728)
Q Consensus 647 ~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~p~~~~~~ 688 (728)
...|.-....|++++|+.+|..+++.+...+. ..+|.....+
T Consensus 19 v~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l 61 (93)
T 1wfd_A 19 LKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVL 61 (93)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34445556789999999999999998877653 3445444433
No 316
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=45.70 E-value=1.6e+02 Score=29.44 Aligned_cols=14 Identities=21% Similarity=0.173 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q 004829 534 LEQAVKLLNKALKI 547 (728)
Q Consensus 534 ~~~A~~~~~~al~~ 547 (728)
...|..+|++|--+
T Consensus 142 lK~A~~~fq~AAG~ 155 (376)
T 3r9m_A 142 AKEVHRSLKIAAGI 155 (376)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666444
No 317
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=45.65 E-value=79 Score=23.71 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=24.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004829 647 SNLAGTYDAMGRIDDAIEILEYVVGMREEKL 677 (728)
Q Consensus 647 ~~La~~~~~~g~~~~A~~~~~~al~~~~~~~ 677 (728)
...|.-+...|++++|+.+|.++++.+...+
T Consensus 23 v~~Ave~D~~g~y~eAl~lY~~aie~l~~al 53 (83)
T 2w2u_A 23 AINAVKADKEGNAEEAITNYKKAIEVLAQLV 53 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3344555788999999999999999876643
No 318
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.59 E-value=1e+02 Score=35.55 Aligned_cols=98 Identities=11% Similarity=-0.094 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------------HHH-hcCCCChhHHHHHHHHHHHHHHcCChhHHH
Q 004829 221 LGPFLLKQTREMISSGENPQKALELAKRAMKSF-------------EIC-ANGKPSLEQVMCLHVLAAIHCSLGQYNEAI 286 (728)
Q Consensus 221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~-------------~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 286 (728)
.+..-+-+|+.++..| ++++|..+|++|-.-+ ... ............|..+..++...+-++-++
T Consensus 839 t~~~~yv~gr~~L~~g-e~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi 917 (950)
T 4gq2_M 839 DPIAVYLKALIYLKSK-EAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL 917 (950)
T ss_dssp SHHHHHHHHHHHHHTT-CHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ChHHHHHHHHHHHHcC-CHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHH
Confidence 3344578999999998 9999999999865211 000 011112223456778888899999999999
Q ss_pred HHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhC
Q 004829 287 PVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLG 323 (728)
Q Consensus 287 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 323 (728)
.+.+.|+.... .+.+......+..+-..+...|
T Consensus 918 ~fA~lAI~~~~----~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 918 EFSLLADASKE----TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHTCC----SCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcc----cCCccchHHHHHHHHHHHhhCC
Confidence 99999987642 2233333345555555544433
No 319
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.60 E-value=2.1e+02 Score=32.94 Aligned_cols=72 Identities=8% Similarity=0.013 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-------------HHhc--CCCCHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 004829 434 SIDCSIGDAYLSLARFDEAIFSYHKALTAF-------------KSAK--GENHPAVASVFVRLADLYHKIGKLRDSKSYC 498 (728)
Q Consensus 434 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 498 (728)
..-+.+|.+|...|++++|..+|++|-.-. .... .+........|..+..++...+-++-++.+.
T Consensus 841 ~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA 920 (950)
T 4gq2_M 841 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 920 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 345789999999999999999998764210 0000 0111223447778888888889999999999
Q ss_pred HHHHHHH
Q 004829 499 ENALKIY 505 (728)
Q Consensus 499 ~~al~~~ 505 (728)
+.|++..
T Consensus 921 ~lAI~~~ 927 (950)
T 4gq2_M 921 LLADASK 927 (950)
T ss_dssp HHHHHTC
T ss_pred HHHHhhc
Confidence 9888865
No 320
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=44.37 E-value=89 Score=23.39 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=23.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004829 648 NLAGTYDAMGRIDDAIEILEYVVGMREEKL 677 (728)
Q Consensus 648 ~La~~~~~~g~~~~A~~~~~~al~~~~~~~ 677 (728)
..|.-....|++++|+.+|..+++.+...+
T Consensus 16 ~~Ave~D~~g~y~eAl~lY~~aie~l~~~l 45 (83)
T 2v6y_A 16 ILAVKADKEGKVEDAITYYKKAIEVLSQII 45 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 344455788999999999999999876654
No 321
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=44.25 E-value=98 Score=23.18 Aligned_cols=45 Identities=18% Similarity=0.071 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC-CCChHHHHHHHHH
Q 004829 647 SNLAGTYDAMGRIDDAIEILEYVVGMREEKLG-TANPDVEDEKRRL 691 (728)
Q Consensus 647 ~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~p~~~~~~~~L 691 (728)
...|.-....|++++|+.+|..+++.+...+. ..+|.....+...
T Consensus 17 ~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k 62 (85)
T 2v6x_A 17 VQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAK 62 (85)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 33444556789999999999999998766543 3445444444333
No 322
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=42.00 E-value=54 Score=24.28 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004829 646 YSNLAGTYDAMGRIDDAIEILEYVVGMREEKLG 678 (728)
Q Consensus 646 ~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~ 678 (728)
...+|+=|...|+|+.|+.+|+.+++...+.+.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~ 47 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKYLY 47 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999987776654
No 323
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=40.38 E-value=1.5e+02 Score=24.97 Aligned_cols=41 Identities=12% Similarity=0.010 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHH
Q 004829 645 VYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDE 687 (728)
Q Consensus 645 ~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~ 687 (728)
.++..|.+|...|+.+.|.-+|-+.+.+...+ +.||+....
T Consensus 44 ~L~r~A~~y~~EGd~E~AYilymRy~~L~~kI--pkHpdyk~~ 84 (144)
T 2a9u_A 44 KIFKTAEECRLDRDEERAYVLYMKYVTVYNLI--KKRPDFKQQ 84 (144)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TTSHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--hcCcchhhh
Confidence 45667899999999999999999999998544 678887543
No 324
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=40.33 E-value=71 Score=24.66 Aligned_cols=68 Identities=7% Similarity=-0.088 Sum_probs=44.6
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 004829 357 VAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGH 428 (728)
Q Consensus 357 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 428 (728)
.|..++..|+|-+|-+.++..-...+. .......+.+....|......|+. |...+.+++..+...+.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~--~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~~ 74 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATG--EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLPC 74 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCCS
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCC--chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCCC
Confidence 455677789999998888888765421 112233344455556666678887 88888888877655543
No 325
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=39.02 E-value=41 Score=29.06 Aligned_cols=72 Identities=13% Similarity=0.192 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829 563 AQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIAL-NQMGLACVQRYTINEAADLFEEARTILEKE 634 (728)
Q Consensus 563 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 634 (728)
+.-+..++..|+|=+|-+.++.+-..............+.+. ...|..+.+.|+..-|..++.+++..+...
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~ 108 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGV 108 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 345677788899999998888775431100001112234444 555667778899999999999999986553
No 326
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=37.17 E-value=1.3e+02 Score=22.62 Aligned_cols=48 Identities=10% Similarity=0.251 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH-HHHHHHH
Q 004829 308 KFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETC-RYVAEAH 361 (728)
Q Consensus 308 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~ 361 (728)
.+..+..-|.-++..++|.+|..+|+++... .+.|..-.++ +.++.|-
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~------ten~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNL------SDNEEIKKIASFYLEECR 100 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHcc------ccCHHHHHHHHHHHHHHH
Confidence 3445777888899999999999999999877 3356655555 5555553
No 327
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=34.53 E-value=3.5e+02 Score=26.79 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHHHHHH
Q 004829 308 KFAGCMQLGDTYAMLG---------QIENSILCYTAGLEIQRQ 341 (728)
Q Consensus 308 ~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~~~ 341 (728)
.+.+++++|.+|...+ ....|..+|++|--++.-
T Consensus 116 ~a~VLfNiaal~s~~a~~~~r~~~~glK~A~~~fq~AAG~f~~ 158 (363)
T 3rau_A 116 QACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAY 158 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Confidence 4557888888887664 356788888887766543
No 328
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=33.96 E-value=1.5e+02 Score=26.70 Aligned_cols=59 Identities=7% Similarity=0.029 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCH
Q 004829 472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL 534 (728)
Q Consensus 472 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 534 (728)
...+..++.+|.++...++|.+|...+..|+..+.... ......++..+.-+-.-+|+.
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~----~~~k~~IL~yLIp~~Ll~G~i 69 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS----QKNKRMILIYLLPVKMLLGHM 69 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH----HHHHHHHHHHHHHHHHHcCCC
Confidence 34567788999999999999999999999999865422 334444555555555556664
No 329
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=32.25 E-value=3.2e+02 Score=27.42 Aligned_cols=118 Identities=12% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHc--------CCCChHHHHHHHHHHHHHHHhCCHHHHH--
Q 004829 308 KFAGCMQLGDTYAMLGQ------IENSILCYTAGLEIQRQVL--------GETDHRVGETCRYVAEAHVQSLQFDEAE-- 371 (728)
Q Consensus 308 ~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~-- 371 (728)
.+.+++++|.+|...+. ...|..+|++|--++.-+. .+-++....++..+..+..+.--+.+|+
T Consensus 122 ~a~vLfNlaal~s~~A~~~~r~~lk~A~~~fq~AAG~f~~l~~~~~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~ 201 (392)
T 1zb1_A 122 KSCTLFNIAVIFTQIARENINEDYKNSIANLTKAFSCFEYLSENFLNSPSVDLQSENTRFLANICHAEAQELFVLKLLND 201 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred ------------------HHHHHHHHHHHHcCCC----------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829 372 ------------------KICQMALDIHRENTSP----------------ASIEEAADRRLMGLICDSKGDYEAALEHYV 417 (728)
Q Consensus 372 ------------------~~~~~al~~~~~~~~~----------------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 417 (728)
.+|+++.......... .....+.+++..|......+++.+|+..++
T Consensus 202 ~~~~~k~~liAkLa~~~~~~Y~~a~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~ 281 (392)
T 1zb1_A 202 QISSKQYTLISKLSRATCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENRVGEAIAFLD 281 (392)
T ss_dssp TTGGGCHHHHHHHHHHHHHHHHHHHHHHHSCCCTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred cccCCchhHHHHHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Q ss_pred HHHHHHHh
Q 004829 418 LASMSMAA 425 (728)
Q Consensus 418 ~al~~~~~ 425 (728)
.|...+..
T Consensus 282 ~A~~~l~~ 289 (392)
T 1zb1_A 282 FSMQQLIS 289 (392)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 330
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=29.76 E-value=3.5e+02 Score=27.58 Aligned_cols=96 Identities=11% Similarity=0.089 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------hcCCC-------Ch----------------------hHHH
Q 004829 600 FGIALNQMGLACVQRYTINEAADLFEEARTILEK------EYGPY-------HH----------------------DTLG 644 (728)
Q Consensus 600 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~-------~~----------------------~~~~ 644 (728)
....+..|+..+...|+|.+|.-++..+..+.-+ .+..+ .| ....
T Consensus 10 ~~~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~~ 89 (428)
T 2wm9_A 10 RKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLME 89 (428)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHHH
Confidence 4567788999999999999999888755543222 11000 01 0112
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 004829 645 VYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE 697 (728)
Q Consensus 645 ~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~ 697 (728)
.+...+..+.+-+.|+.|+.+++..+..++.. .+......++..++.+|..
T Consensus 90 ll~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~--~dy~~Ls~~~~~~a~~y~~ 140 (428)
T 2wm9_A 90 LLEQCADGLWKAERYELIADIYKLIIPIYEKR--RDFERLAHLYDTLHRAYSK 140 (428)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHTTTHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHH
Confidence 34455566677778899999999888888764 2334445555555555543
No 331
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=29.74 E-value=93 Score=22.68 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829 478 FVRLADLYHKIGKLRDSKSYCENALKIYGK 507 (728)
Q Consensus 478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (728)
-..+|..+...|++++|..+|-+|+.++.+
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 356788899999999999999999998654
No 332
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=28.15 E-value=93 Score=23.96 Aligned_cols=67 Identities=15% Similarity=-0.044 Sum_probs=42.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004829 398 LMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSA 466 (728)
Q Consensus 398 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 466 (728)
..|..++..|+|-+|-+.++..-..............+....|..+...|+. |...+.+++......
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~ 72 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGL 72 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhC
Confidence 3466777889999999988876543211000112233344445566678888 999999999876544
No 333
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=28.12 E-value=5.9e+02 Score=27.39 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004829 430 LDVASIDCSIGDAYLSLARFDEAIFSYHK 458 (728)
Q Consensus 430 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 458 (728)
|.....-+..+......|+..+|.....+
T Consensus 99 p~~~~~~c~~~~A~~~~G~~~~a~~~~~~ 127 (618)
T 1qsa_A 99 PGTTEAQCNYYYAKWNTGQSEEAWQGAKE 127 (618)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 44455556666667777776666554433
No 334
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=27.87 E-value=5e+02 Score=26.47 Aligned_cols=122 Identities=16% Similarity=0.087 Sum_probs=0.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829 511 GIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR 590 (728)
Q Consensus 511 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 590 (728)
.............|...|...++.+--+.++. .|+..+...++|.+|--++.-...++.
T Consensus 8 ~e~~d~r~~~~~~l~~~y~~~~~~el~i~~l~---------------------~L~~~h~~~~ny~EAa~~l~lhA~l~~ 66 (436)
T 2yin_A 8 DESKDNRMSCTVNLLNFYKDNNREEMYIRYLY---------------------KLRDLHLDCDNYTEAAYTLLLHTWLLK 66 (436)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCHHHHHHHHH---------------------HHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ccccchHHHHHHHHHHHHHhCCChHHHHHHHH---------------------HHHHHHHHCcCHHHHHHHHHHHHHHhC
Q ss_pred HhCCCCcHHHHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHHH
Q 004829 591 TSGEKKSALFGI---------------ALNQMGLACVQRYTINEAADLFEEARTILEKE-YGPYHHDTLGVYSNLAGTYD 654 (728)
Q Consensus 591 ~~~~~~~~~~~~---------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~La~~~~ 654 (728)
-......+.... .+......+.+-+.|+.|+.+|+..+..++.. .. ......++..++.+|.
T Consensus 67 w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~E~ai~l~k~L~~~yE~~~~D--y~~Ls~~~~~~a~~y~ 144 (436)
T 2yin_A 67 WSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMWEEAISLCKELAEQYEMEIFD--YELLSQNLIQQAKFYE 144 (436)
T ss_dssp SSCCC--------------CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCC--HHHHHHHHHHHHHHHH
T ss_pred CCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_pred H
Q 004829 655 A 655 (728)
Q Consensus 655 ~ 655 (728)
.
T Consensus 145 ~ 145 (436)
T 2yin_A 145 S 145 (436)
T ss_dssp H
T ss_pred H
No 335
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=27.70 E-value=4.1e+02 Score=25.43 Aligned_cols=228 Identities=10% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCC----CcHHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHHhcCC
Q 004829 361 HVQSLQFDEAEKICQMALDIHRENTSP----ASIEEAADRRLMGLICDSKGDYE--------AALEHYVLASMSMAANGH 428 (728)
Q Consensus 361 ~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~a~~~~~lg~~~~~~g~~~--------~A~~~~~~al~~~~~~~~ 428 (728)
+....+.+.-.+++..+.+.+...+.. ..+........++.-+....+.+ +-.++..+.+........
T Consensus 15 li~~~d~d~~f~il~~~rk~~~~gg~~Ri~~TlPpLvf~~l~L~r~~~~~~~~d~~~~~~~~kif~fv~~~i~~L~~~~~ 94 (298)
T 2r17_C 15 LLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAEL 94 (298)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHTTTTTCSSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhCCccceeecccHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhcccc
Q ss_pred ChhHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHH
Q 004829 429 ELDVASIDCSIGDAYLSLAR---FDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIG-KLRDSKSYCENALKI 504 (728)
Q Consensus 429 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 504 (728)
.......+..-|.+.-..|- -+-|.++|.+|+.++++...+............|.+..... ..+.-..+..++...
T Consensus 95 ~elalrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~IsdSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~~ 174 (298)
T 2r17_C 95 AELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALA 174 (298)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHHH
Q ss_pred HcCCCCCCCcHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHhcCCCCCC--cHHHHHHHHHHHHHHc
Q 004829 505 YGKPNHGIPSEEIASGLIDIAAIYQS----------MNELEQAVKLLNKALKIYGKTPGQQS--TIAGIEAQMGVMYYMT 572 (728)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~la~~~~~----------~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~la~~~~~~ 572 (728)
..+.. ..++...+...-+.+++. ..+-+..++++++++++......... .+..-..+.-..|+..
T Consensus 175 askLL---KK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~d~~~~v~LfveILn~ylyff~~ 251 (298)
T 2r17_C 175 ASKLL---KKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEK 251 (298)
T ss_dssp HHTCS---SHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcc---CcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhhhhC
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 004829 573 GNYSDSYNTLKSAISKFRT 591 (728)
Q Consensus 573 g~~~~A~~~~~~al~~~~~ 591 (728)
|+..-..++++..+++.+.
T Consensus 252 g~~~Vt~~~in~LI~lI~~ 270 (298)
T 2r17_C 252 ENDAVTIQVLNQLIQKIRE 270 (298)
T ss_dssp TCTTSCHHHHHHHHHHHHT
T ss_pred CCCcccHHHHHHHHHHHHH
No 336
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=27.40 E-value=1.6e+02 Score=26.47 Aligned_cols=58 Identities=12% Similarity=0.050 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCH
Q 004829 349 RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDY 409 (728)
Q Consensus 349 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~ 409 (728)
+.....+.+|.++...++|.+|.+.+..|+..++... ....-.++..+.-+-...|+.
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~---~~~k~~IL~yLIp~~Ll~G~i 69 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS---QKNKRMILIYLLPVKMLLGHM 69 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC---HHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH---HHHHHHHHHHHHHHHHHcCCC
Confidence 5567789999999999999999999999998876432 122223344444444445553
No 337
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=27.21 E-value=2.8e+02 Score=28.67 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCC
Q 004829 326 ENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQ 366 (728)
Q Consensus 326 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 366 (728)
+.|+.+|++|+....+.-..+++.....+..++..|...|+
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGD 489 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGD 489 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccH
Confidence 46677777777777776666677777777777665544443
No 338
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=27.16 E-value=2.4e+02 Score=29.03 Aligned_cols=41 Identities=22% Similarity=0.149 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 004829 618 NEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGR 658 (728)
Q Consensus 618 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~ 658 (728)
++|+++|++|+..+++....++++....+..++..|...|+
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGD 489 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGD 489 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccH
Confidence 57788888888888888777888888888888777655554
No 339
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=26.53 E-value=1.3e+02 Score=23.24 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=25.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829 478 FVRLADLYHKIGKLRDSKSYCENALKIYGK 507 (728)
Q Consensus 478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (728)
-..+|..+...|+++.|+.+|-+|+.++.+
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 346788899999999999999999998754
No 340
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=26.49 E-value=1.6e+02 Score=24.75 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=38.7
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829 443 YLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI 504 (728)
Q Consensus 443 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (728)
+..+|+-++-.+.+...+. +.+-.+..+..+|.+|.+.|+..+|.+++.+|.+.
T Consensus 101 lv~~~KkDqLdki~~~~l~--------n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILK--------NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhccHhHHHHHHHHHhc--------cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4456666655555444322 24445677899999999999999999999998775
No 341
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=25.81 E-value=77 Score=32.88 Aligned_cols=33 Identities=12% Similarity=-0.133 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 598 ALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 598 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
.....++..+|++|+..|+|++|+.+.++++..
T Consensus 187 ~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 187 MNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 334568888999999999999999999999875
No 342
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=25.43 E-value=5.1e+02 Score=25.75 Aligned_cols=33 Identities=6% Similarity=-0.010 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhC------------CHHHHHHHHHHHHHHHH
Q 004829 308 KFAGCMQLGDTYAMLG------------QIENSILCYTAGLEIQR 340 (728)
Q Consensus 308 ~~~~~~~la~~~~~~g------------~~~~A~~~~~~al~~~~ 340 (728)
.+.+++++|.+|...+ ....|..+|++|--++.
T Consensus 113 ~a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~fq~AAG~f~ 157 (376)
T 3r9m_A 113 LISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFK 157 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 3456777777776543 25677788888766554
No 343
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=24.54 E-value=5.5e+02 Score=25.80 Aligned_cols=122 Identities=7% Similarity=0.017 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH-HHHHH---H-Hc
Q 004829 582 LKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSN-LAGTY---D-AM 656 (728)
Q Consensus 582 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-La~~~---~-~~ 656 (728)
+++++.++-......-.........||.-+...|+...|.-+|--+-.+ .....+|.. +-..- . ..
T Consensus 229 WkE~La~i~t~a~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~---------dk~v~iW~~~~~~~~~~~~~~~ 299 (399)
T 2pm7_A 229 WKFISKAIQNLYPNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGSL---------DKVASIWLSEFPDLEDKLKKDN 299 (399)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCH---------HHHHHHHHHSHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCH---------HHHHHHHHHhcchhhhcccccc
Confidence 4444444444432210134566678888888888888888777655322 011112211 00000 0 00
Q ss_pred CC----hHHHHHHHHHHHHHHHHHcC----CCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 004829 657 GR----IDDAIEILEYVVGMREEKLG----TANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFL 713 (728)
Q Consensus 657 g~----~~~A~~~~~~al~~~~~~~~----~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll 713 (728)
.. ...++.-+-+-+.+++...+ ...+.....+...|.++..+|+.+.|. ++++.+-
T Consensus 300 ~s~~~~~~~~Lqe~iEkv~vl~~a~~~~~~~~~~~l~~~~~eYA~lLA~qG~l~~A~-~yL~~lp 363 (399)
T 2pm7_A 300 KTIYEAHSECMTEFIERFTVFSNFINGSSTINNEQLIAKFLEFINLTTSTGNFELAT-EFLNSLP 363 (399)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTSCC---CCCHHHHHHHHHHHHHHHTTTCHHHHH-HHHHHSC
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHhCCCHHHHH-HHHHhCC
Confidence 00 01122222121222222222 245667788889999999999999999 8887654
No 344
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=24.17 E-value=84 Score=32.67 Aligned_cols=33 Identities=18% Similarity=0.013 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829 598 ALFGIALNQMGLACVQRYTINEAADLFEEARTI 630 (728)
Q Consensus 598 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 630 (728)
.....++..+|++|+..|+|++|..+.++++..
T Consensus 193 ~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 193 VNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 345678888999999999999999999999875
No 345
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=23.70 E-value=5.4e+02 Score=26.16 Aligned_cols=34 Identities=9% Similarity=0.150 Sum_probs=26.6
Q ss_pred hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829 305 ALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEI 338 (728)
Q Consensus 305 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 338 (728)
|......+..|+..+...|+|.+|-.++..+..+
T Consensus 7 pdl~~~wl~~La~~h~~~~n~~EAa~cl~~~aal 40 (428)
T 2wm9_A 7 PELRKTWLDSMARIHVKNGDLSEAAMCYVHVTAL 40 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4445556889999999999999999988755543
No 346
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=23.61 E-value=69 Score=23.38 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829 520 GLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551 (728)
Q Consensus 520 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 551 (728)
--..+|..+...|++++|..+|-+|+..+++-
T Consensus 19 ~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 19 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 34568889999999999999999999876543
No 347
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=22.29 E-value=1.6e+02 Score=22.67 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829 311 GCMQLGDTYAMLGQIENSILCYTAGLEIQ 339 (728)
Q Consensus 311 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 339 (728)
-...+|..+...|+++.|+.+|-+|+.++
T Consensus 22 ~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc 50 (95)
T 1om2_A 22 EEIQLGEELLAQGDYEKGVDHLTNAIAVC 50 (95)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 46788999999999999999999999885
No 348
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=22.01 E-value=1e+02 Score=32.01 Aligned_cols=30 Identities=20% Similarity=0.069 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829 392 EAADRRLMGLICDSKGDYEAALEHYVLASM 421 (728)
Q Consensus 392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 421 (728)
...++..++.+|...|++++|..+.++++.
T Consensus 189 k~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 344566677777777777777777666654
No 349
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=21.35 E-value=6.3e+02 Score=27.41 Aligned_cols=102 Identities=9% Similarity=-0.022 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC--C---------hhHHHHHHHH
Q 004829 223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLG--Q---------YNEAIPVLER 291 (728)
Q Consensus 223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~---------~~~A~~~~~~ 291 (728)
......|..+-..| ++++|+.+|.-|-+.-.. ....-..|+.+..... + .+.-+...++
T Consensus 444 ~i~~~aA~~ae~~G-~~~dAi~LY~La~~~d~v---------l~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~ 513 (661)
T 2qx5_A 444 TITEQAARRADEDG-RIYDSILLYQLAEEYDIV---------ITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARR 513 (661)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHTTCHHHH---------HHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHhcCHHHH---------HHHHHHHHHHHhcccccccccccccccccccHHHHHHH
Confidence 34456677788887 899999988766332111 1111223444444331 1 0122333333
Q ss_pred hhhhhhhh-----cCCchhHhHHHHHHHHHHHH--HHhCCHHHHHHHHHH
Q 004829 292 SVEIPVLE-----DGQDHALAKFAGCMQLGDTY--AMLGQIENSILCYTA 334 (728)
Q Consensus 292 al~~~~~~-----~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~ 334 (728)
.++.+... .........+..+..+..++ +..|+|+.|+..+++
T Consensus 514 i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~ 563 (661)
T 2qx5_A 514 MASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMEL 563 (661)
T ss_dssp HHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 33332111 00111122345566777666 788999999988876
Done!