Query 004834
Match_columns 728
No_of_seqs 626 out of 5311
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 13:42:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0466 Lon ATP-dependent Lon 100.0 2E-148 4E-153 1225.7 69.3 652 12-719 125-776 (782)
2 KOG2004 Mitochondrial ATP-depe 100.0 5E-137 1E-141 1124.8 63.6 699 5-723 203-904 (906)
3 PRK10787 DNA-binding ATP-depen 100.0 1E-113 3E-118 1009.2 70.7 651 12-719 124-774 (784)
4 TIGR00763 lon ATP-dependent pr 100.0 4E-109 9E-114 981.6 74.1 657 11-716 118-775 (775)
5 TIGR02902 spore_lonB ATP-depen 100.0 6.4E-53 1.4E-57 480.3 38.7 405 214-716 66-531 (531)
6 TIGR02903 spore_lon_C ATP-depe 100.0 2.2E-50 4.8E-55 465.8 47.7 499 83-716 70-615 (615)
7 PRK13765 ATP-dependent proteas 100.0 9.4E-49 2E-53 448.3 30.2 353 307-719 226-605 (637)
8 TIGR00764 lon_rel lon-related 100.0 1E-47 2.2E-52 442.1 36.7 355 307-719 217-596 (608)
9 TIGR02653 Lon_rel_chp conserve 100.0 7.1E-47 1.5E-51 421.1 32.2 416 238-717 214-673 (675)
10 COG0542 clpA ATP-binding subun 100.0 1.2E-45 2.5E-50 421.7 30.0 391 13-490 336-776 (786)
11 PF05362 Lon_C: Lon protease ( 100.0 5.8E-46 1.3E-50 369.6 17.7 204 509-717 1-204 (204)
12 TIGR03345 VI_ClpV1 type VI sec 100.0 4.2E-36 9.2E-41 357.7 35.5 366 67-445 396-828 (852)
13 CHL00095 clpC Clp protease ATP 100.0 5.1E-35 1.1E-39 350.1 34.1 408 9-492 340-805 (821)
14 PRK10865 protein disaggregatio 100.0 2.4E-34 5.2E-39 343.7 32.6 389 67-489 387-849 (857)
15 TIGR03346 chaperone_ClpB ATP-d 100.0 1.4E-33 3E-38 338.6 36.0 388 67-489 382-846 (852)
16 PRK11823 DNA repair protein Ra 100.0 3E-33 6.6E-38 312.2 20.9 187 507-717 255-445 (446)
17 COG1066 Sms Predicted ATP-depe 100.0 5.1E-33 1.1E-37 292.8 15.9 185 507-717 267-455 (456)
18 TIGR02639 ClpA ATP-dependent C 100.0 8.3E-32 1.8E-36 319.1 26.7 309 145-487 382-730 (731)
19 PRK11034 clpA ATP-dependent Cl 100.0 2.6E-31 5.7E-36 311.0 28.1 312 145-490 386-737 (758)
20 TIGR00416 sms DNA repair prote 100.0 1.2E-31 2.5E-36 299.6 21.8 183 506-712 268-454 (454)
21 COG1067 LonB Predicted ATP-dep 100.0 2.6E-28 5.7E-33 278.3 23.6 354 307-719 225-622 (647)
22 TIGR00368 Mg chelatase-related 100.0 5.4E-28 1.2E-32 271.9 17.6 160 540-715 2-163 (499)
23 COG1222 RPT1 ATP-dependent 26S 100.0 5.7E-28 1.2E-32 250.3 14.9 228 191-454 129-375 (406)
24 KOG1051 Chaperone HSP104 and r 99.9 2.6E-27 5.6E-32 274.7 19.5 279 177-490 526-854 (898)
25 KOG0730 AAA+-type ATPase [Post 99.9 1.7E-26 3.8E-31 255.2 14.4 209 207-454 428-655 (693)
26 KOG0733 Nuclear AAA ATPase (VC 99.9 3.3E-26 7.2E-31 249.2 14.4 210 208-454 506-736 (802)
27 PF13541 ChlI: Subunit ChlI of 99.9 2.9E-25 6.3E-30 202.6 12.5 121 554-685 1-121 (121)
28 TIGR01242 26Sp45 26S proteasom 99.9 1.5E-25 3.2E-30 246.0 8.1 301 116-454 7-346 (364)
29 PRK05342 clpX ATP-dependent pr 99.9 1.1E-23 2.3E-28 232.2 21.5 244 202-453 60-384 (412)
30 KOG0738 AAA+-type ATPase [Post 99.9 1.3E-24 2.7E-29 226.6 12.4 208 213-455 212-436 (491)
31 KOG0727 26S proteasome regulat 99.9 3.4E-24 7.3E-29 211.6 12.9 211 208-454 150-379 (408)
32 TIGR00382 clpX endopeptidase C 99.9 2.9E-23 6.2E-28 227.4 21.0 240 203-452 67-389 (413)
33 PRK09862 putative ATP-dependen 99.9 1.5E-23 3.2E-28 234.8 17.8 164 536-716 3-168 (506)
34 COG1223 Predicted ATPase (AAA+ 99.9 2.9E-23 6.3E-28 206.1 12.6 210 208-454 116-338 (368)
35 KOG0733 Nuclear AAA ATPase (VC 99.9 9.4E-23 2E-27 222.4 17.6 208 213-455 190-415 (802)
36 PRK03992 proteasome-activating 99.9 1E-23 2.2E-28 232.7 9.9 231 189-454 107-355 (389)
37 KOG0736 Peroxisome assembly fa 99.9 1.5E-22 3.3E-27 225.8 16.2 208 210-454 669-898 (953)
38 KOG0734 AAA+-type ATPase conta 99.9 1.9E-22 4.1E-27 216.9 14.8 209 207-454 298-524 (752)
39 PTZ00454 26S protease regulato 99.9 1.3E-21 2.9E-26 215.2 19.5 212 208-454 140-369 (398)
40 KOG0728 26S proteasome regulat 99.9 2.1E-21 4.6E-26 191.7 14.1 215 205-454 139-371 (404)
41 CHL00195 ycf46 Ycf46; Provisio 99.9 4.8E-21 1E-25 215.1 17.9 204 213-454 228-447 (489)
42 KOG0731 AAA+-type ATPase conta 99.9 9.3E-21 2E-25 216.2 17.8 208 210-454 308-536 (774)
43 KOG0739 AAA+-type ATPase [Post 99.8 1.3E-21 2.8E-26 197.6 8.4 215 213-456 133-355 (439)
44 COG0464 SpoVK ATPases of the A 99.8 2.2E-20 4.9E-25 213.4 18.9 206 213-454 242-465 (494)
45 PF05496 RuvB_N: Holliday junc 99.8 3.4E-20 7.4E-25 184.5 16.7 187 212-429 23-213 (233)
46 CHL00181 cbbX CbbX; Provisiona 99.8 3E-20 6.6E-25 196.6 16.4 218 201-454 11-261 (287)
47 TIGR01243 CDC48 AAA family ATP 99.8 3E-20 6.6E-25 221.3 18.0 205 211-454 451-675 (733)
48 PRK05201 hslU ATP-dependent pr 99.8 6.9E-20 1.5E-24 198.0 18.5 243 202-450 4-409 (443)
49 KOG0726 26S proteasome regulat 99.8 6E-21 1.3E-25 192.2 8.2 216 203-454 175-409 (440)
50 KOG0737 AAA+-type ATPase [Post 99.8 1.8E-20 3.9E-25 196.0 12.0 212 214-455 93-315 (386)
51 KOG0735 AAA+-type ATPase [Post 99.8 5.3E-20 1.2E-24 203.8 16.0 205 213-455 667-889 (952)
52 PTZ00361 26 proteosome regulat 99.8 4.7E-20 1E-24 204.1 14.9 209 211-454 181-407 (438)
53 TIGR00390 hslU ATP-dependent p 99.8 2.3E-19 5E-24 193.9 18.8 240 205-450 4-407 (441)
54 TIGR01241 FtsH_fam ATP-depende 99.8 1.5E-19 3.3E-24 206.2 17.4 204 213-454 55-278 (495)
55 TIGR02880 cbbX_cfxQ probable R 99.8 5.6E-19 1.2E-23 187.0 18.0 218 201-454 10-260 (284)
56 COG1219 ClpX ATP-dependent pro 99.8 4.6E-19 1E-23 181.1 16.5 240 204-451 52-371 (408)
57 TIGR02881 spore_V_K stage V sp 99.8 8.9E-19 1.9E-23 183.7 18.6 205 214-454 7-245 (261)
58 KOG0652 26S proteasome regulat 99.8 8.1E-20 1.8E-24 181.5 9.2 209 210-454 168-395 (424)
59 PLN00020 ribulose bisphosphate 99.8 1.8E-18 4E-23 182.9 19.3 169 238-429 146-330 (413)
60 TIGR03689 pup_AAA proteasome A 99.8 6.2E-19 1.4E-23 197.7 15.7 168 212-399 181-379 (512)
61 KOG0729 26S proteasome regulat 99.8 1.5E-19 3.3E-24 180.0 8.7 215 204-454 168-401 (435)
62 CHL00176 ftsH cell division pr 99.8 1.4E-18 3.1E-23 200.9 17.0 204 213-454 183-406 (638)
63 COG0465 HflB ATP-dependent Zn 99.8 5.5E-18 1.2E-22 190.7 15.7 207 210-454 147-373 (596)
64 KOG0651 26S proteasome regulat 99.7 1.6E-18 3.5E-23 176.6 8.0 213 207-454 126-356 (388)
65 COG0606 Predicted ATPase with 99.7 2.6E-18 5.6E-23 186.1 10.0 153 549-718 2-156 (490)
66 COG2255 RuvB Holliday junction 99.7 3.8E-17 8.3E-22 165.4 17.4 186 212-428 25-214 (332)
67 COG4930 Predicted ATP-dependen 99.7 2.7E-16 5.8E-21 164.5 24.0 202 508-716 474-680 (683)
68 CHL00206 ycf2 Ycf2; Provisiona 99.7 1E-17 2.2E-22 203.4 15.5 192 238-454 1628-1860(2281)
69 COG2256 MGS1 ATPase related to 99.7 3.7E-17 8.1E-22 172.9 17.3 183 214-444 25-217 (436)
70 KOG0740 AAA+-type ATPase [Post 99.7 6E-18 1.3E-22 183.3 10.5 210 209-454 149-374 (428)
71 KOG0741 AAA+-type ATPase [Post 99.7 3.6E-18 7.8E-23 184.0 8.1 254 214-523 222-509 (744)
72 PRK10733 hflB ATP-dependent me 99.7 6.9E-17 1.5E-21 188.9 17.9 204 213-454 152-375 (644)
73 PF07724 AAA_2: AAA domain (Cd 99.7 4.9E-18 1.1E-22 166.1 5.8 108 239-367 2-131 (171)
74 TIGR01243 CDC48 AAA family ATP 99.7 9.2E-17 2E-21 191.6 17.4 204 212-454 177-399 (733)
75 TIGR00635 ruvB Holliday juncti 99.7 2.5E-16 5.4E-21 169.0 18.8 196 213-441 4-203 (305)
76 KOG0745 Putative ATP-dependent 99.7 2.3E-16 4.9E-21 167.1 17.5 202 240-449 226-510 (564)
77 KOG0732 AAA+-type ATPase conta 99.7 1.2E-16 2.6E-21 187.2 16.5 212 212-455 264-493 (1080)
78 PRK14956 DNA polymerase III su 99.7 1.1E-16 2.5E-21 177.1 14.9 195 214-444 19-227 (484)
79 PRK00080 ruvB Holliday junctio 99.7 5E-16 1.1E-20 168.4 18.8 199 213-444 25-227 (328)
80 KOG0730 AAA+-type ATPase [Post 99.7 2.2E-16 4.7E-21 175.7 15.5 204 213-454 184-404 (693)
81 KOG0989 Replication factor C, 99.7 1.5E-16 3.3E-21 162.7 12.7 178 214-429 37-222 (346)
82 TIGR02640 gas_vesic_GvpN gas v 99.7 6.3E-16 1.4E-20 162.2 17.5 150 240-397 21-197 (262)
83 PLN03025 replication factor C 99.7 5E-16 1.1E-20 167.7 16.0 189 191-441 1-202 (319)
84 COG1220 HslU ATP-dependent pro 99.7 1E-15 2.2E-20 157.8 16.1 239 204-448 6-408 (444)
85 PRK14962 DNA polymerase III su 99.7 9.9E-16 2.2E-20 172.2 16.7 195 214-445 15-224 (472)
86 PRK07003 DNA polymerase III su 99.7 1.1E-15 2.3E-20 175.0 16.8 195 214-444 17-225 (830)
87 PRK12323 DNA polymerase III su 99.7 9.9E-16 2.1E-20 173.4 14.7 192 214-441 17-227 (700)
88 PRK14960 DNA polymerase III su 99.6 1.9E-15 4.2E-20 171.4 15.6 191 214-444 16-224 (702)
89 PRK14958 DNA polymerase III su 99.6 2.4E-15 5.1E-20 170.8 15.4 194 214-444 17-225 (509)
90 COG1750 Archaeal serine protea 99.6 4.2E-15 9E-20 163.5 15.7 160 549-719 49-211 (579)
91 PRK06645 DNA polymerase III su 99.6 6E-15 1.3E-19 166.5 16.5 191 214-444 22-234 (507)
92 PRK14949 DNA polymerase III su 99.6 6.9E-15 1.5E-19 171.5 16.7 191 214-441 17-222 (944)
93 PRK14961 DNA polymerase III su 99.6 9.1E-15 2E-19 160.5 16.9 195 213-444 16-225 (363)
94 PRK14964 DNA polymerase III su 99.6 7.3E-15 1.6E-19 164.6 16.0 196 213-445 13-223 (491)
95 TIGR01650 PD_CobS cobaltochela 99.6 2.4E-14 5.3E-19 151.8 18.8 148 240-397 64-232 (327)
96 PRK04195 replication factor C 99.6 1.8E-14 3.8E-19 164.1 18.8 200 191-442 2-205 (482)
97 KOG0742 AAA+-type ATPase [Post 99.6 2.3E-13 5.1E-18 143.2 25.1 226 190-444 326-585 (630)
98 PRK13342 recombination factor 99.6 1.4E-14 3.1E-19 161.7 17.3 182 214-444 13-201 (413)
99 PRK07994 DNA polymerase III su 99.6 1E-14 2.2E-19 167.9 16.4 191 213-440 16-221 (647)
100 PF00004 AAA: ATPase family as 99.6 9.5E-16 2.1E-20 142.7 5.5 120 243-383 1-131 (132)
101 PRK14951 DNA polymerase III su 99.6 1.6E-14 3.6E-19 165.9 16.7 195 214-444 17-230 (618)
102 PRK14957 DNA polymerase III su 99.6 1.8E-14 3.9E-19 163.6 16.6 193 214-444 17-225 (546)
103 KOG2028 ATPase related to the 99.6 1.7E-14 3.6E-19 150.0 14.8 156 238-430 160-329 (554)
104 PRK07764 DNA polymerase III su 99.6 1.8E-14 3.9E-19 170.9 17.0 191 214-444 16-226 (824)
105 PHA02544 44 clamp loader, smal 99.6 2.7E-14 5.8E-19 154.1 16.8 202 190-441 8-211 (316)
106 PRK14952 DNA polymerase III su 99.6 1.9E-14 4.2E-19 164.8 16.2 195 214-445 14-225 (584)
107 TIGR03345 VI_ClpV1 type VI sec 99.6 1.7E-14 3.6E-19 173.1 16.3 188 213-436 187-395 (852)
108 COG0714 MoxR-like ATPases [Gen 99.6 3.5E-14 7.7E-19 154.0 17.4 171 204-396 15-201 (329)
109 PF07726 AAA_3: ATPase family 99.6 9.1E-16 2E-20 140.0 4.1 124 242-378 1-130 (131)
110 PRK14959 DNA polymerase III su 99.6 1.1E-14 2.5E-19 166.1 13.8 192 214-442 17-223 (624)
111 PRK14963 DNA polymerase III su 99.6 3.7E-14 8E-19 160.8 17.5 193 214-444 15-222 (504)
112 TIGR02639 ClpA ATP-dependent C 99.6 1.5E-14 3.3E-19 172.2 15.0 187 214-436 183-390 (731)
113 PRK08691 DNA polymerase III su 99.6 2.1E-14 4.6E-19 164.6 14.7 192 214-445 17-226 (709)
114 PRK05563 DNA polymerase III su 99.6 4.9E-14 1.1E-18 162.1 17.5 193 214-444 17-225 (559)
115 PRK13341 recombination factor 99.6 2.2E-14 4.7E-19 168.3 14.7 190 214-445 29-223 (725)
116 PRK05896 DNA polymerase III su 99.6 1.9E-14 4.1E-19 163.5 13.5 194 214-445 17-226 (605)
117 PRK07133 DNA polymerase III su 99.6 3.6E-14 7.8E-19 164.2 15.3 192 214-444 19-224 (725)
118 PHA02244 ATPase-like protein 99.6 1.7E-13 3.8E-18 146.6 19.4 136 240-389 119-265 (383)
119 PRK14965 DNA polymerase III su 99.6 3.5E-14 7.6E-19 164.1 15.1 194 214-444 17-225 (576)
120 PRK13531 regulatory ATPase Rav 99.5 5.4E-14 1.2E-18 155.4 15.2 176 202-396 9-192 (498)
121 PF07728 AAA_5: AAA domain (dy 99.5 3.5E-15 7.6E-20 141.1 5.1 125 242-377 1-139 (139)
122 cd01121 Sms Sms (bacterial rad 99.5 1.3E-14 2.9E-19 158.4 10.2 113 506-636 256-372 (372)
123 PRK14953 DNA polymerase III su 99.5 6.9E-14 1.5E-18 158.1 15.6 193 214-444 17-225 (486)
124 COG2204 AtoC Response regulato 99.5 1.4E-13 3.1E-18 151.7 17.4 216 211-444 139-371 (464)
125 TIGR02397 dnaX_nterm DNA polym 99.5 7.9E-14 1.7E-18 152.8 15.3 193 214-444 15-223 (355)
126 PRK14969 DNA polymerase III su 99.5 6.1E-14 1.3E-18 160.3 14.8 195 214-444 17-225 (527)
127 PRK13407 bchI magnesium chelat 99.5 6.7E-14 1.5E-18 150.4 14.2 218 214-452 9-287 (334)
128 PRK12402 replication factor C 99.5 1.2E-13 2.5E-18 150.2 16.0 204 191-442 3-229 (337)
129 PRK07940 DNA polymerase III su 99.5 1.2E-13 2.7E-18 151.9 15.4 185 213-431 5-207 (394)
130 PRK08451 DNA polymerase III su 99.5 2.1E-13 4.4E-18 154.3 17.0 191 214-444 15-223 (535)
131 PRK06647 DNA polymerase III su 99.5 1.8E-13 4E-18 156.9 16.6 195 214-444 17-225 (563)
132 COG2812 DnaX DNA polymerase II 99.5 6.8E-14 1.5E-18 156.3 12.3 196 213-445 16-226 (515)
133 PRK06305 DNA polymerase III su 99.5 2.6E-13 5.5E-18 152.5 16.9 193 214-444 18-227 (451)
134 PRK14948 DNA polymerase III su 99.5 1.9E-13 4.1E-18 158.5 16.2 194 214-443 17-226 (620)
135 COG3604 FhlA Transcriptional r 99.5 1.1E-13 2.4E-18 150.2 13.1 213 214-444 224-453 (550)
136 KOG0743 AAA+-type ATPase [Post 99.5 1.5E-13 3.3E-18 148.2 14.0 132 240-399 235-384 (457)
137 PRK14954 DNA polymerase III su 99.5 2.3E-13 5E-18 157.0 16.5 197 213-445 16-234 (620)
138 KOG0991 Replication factor C, 99.5 7.5E-14 1.6E-18 137.4 10.3 187 190-435 14-210 (333)
139 PRK14970 DNA polymerase III su 99.5 2.8E-13 6E-18 149.3 16.2 191 214-444 18-214 (367)
140 PRK14955 DNA polymerase III su 99.5 1.5E-13 3.3E-18 152.6 14.0 196 213-444 16-233 (397)
141 COG3829 RocR Transcriptional r 99.5 1.6E-13 3.5E-18 150.9 13.8 215 213-444 245-476 (560)
142 PRK00440 rfc replication facto 99.5 2.3E-13 5.1E-18 146.6 14.6 196 189-442 3-206 (319)
143 PRK09111 DNA polymerase III su 99.5 3.3E-13 7.2E-18 155.5 16.6 195 214-444 25-238 (598)
144 KOG0744 AAA+-type ATPase [Post 99.5 3.8E-14 8.2E-19 145.6 6.1 159 219-399 148-341 (423)
145 PRK14950 DNA polymerase III su 99.5 8.3E-13 1.8E-17 153.4 16.8 196 213-444 16-226 (585)
146 PRK14971 DNA polymerase III su 99.5 9.3E-13 2E-17 152.8 17.0 196 213-444 17-227 (614)
147 PRK10865 protein disaggregatio 99.4 6.1E-13 1.3E-17 160.2 15.3 175 213-423 178-373 (857)
148 PRK11034 clpA ATP-dependent Cl 99.4 5.8E-13 1.3E-17 157.1 14.7 206 213-448 186-406 (758)
149 PTZ00112 origin recognition co 99.4 3.3E-12 7.1E-17 147.1 18.4 204 214-448 756-986 (1164)
150 TIGR02974 phageshock_pspF psp 99.4 1.3E-12 2.8E-17 141.3 14.6 211 216-445 2-231 (329)
151 CHL00081 chlI Mg-protoporyphyr 99.4 1.5E-12 3.3E-17 140.3 14.3 201 214-427 18-280 (350)
152 TIGR02928 orc1/cdc6 family rep 99.4 7E-12 1.5E-16 138.0 19.7 214 213-452 15-255 (365)
153 PRK06893 DNA replication initi 99.4 1.3E-12 2.8E-17 134.4 13.0 161 239-444 38-208 (229)
154 PRK12422 chromosomal replicati 99.4 2.2E-12 4.7E-17 144.6 15.4 173 241-450 142-324 (445)
155 TIGR01817 nifA Nif-specific re 99.4 2.1E-12 4.5E-17 149.2 15.7 212 213-444 196-425 (534)
156 TIGR02030 BchI-ChlI magnesium 99.4 2.4E-12 5.2E-17 138.8 15.0 200 214-427 5-267 (337)
157 CHL00095 clpC Clp protease ATP 99.4 1.7E-12 3.6E-17 156.6 15.4 184 213-432 179-382 (821)
158 TIGR03346 chaperone_ClpB ATP-d 99.4 1.3E-12 2.8E-17 157.9 14.5 178 214-427 174-372 (852)
159 PRK05022 anaerobic nitric oxid 99.4 2.9E-12 6.3E-17 146.9 16.4 214 213-445 187-418 (509)
160 PRK08084 DNA replication initi 99.4 1.8E-12 3.9E-17 133.9 13.2 164 239-444 44-214 (235)
161 PRK11331 5-methylcytosine-spec 99.4 2.4E-12 5.3E-17 141.4 14.6 164 214-388 176-362 (459)
162 PRK15424 propionate catabolism 99.4 4.2E-12 9E-17 144.6 15.0 212 214-445 220-463 (538)
163 PRK11608 pspF phage shock prot 99.4 9.6E-12 2.1E-16 134.5 16.1 215 213-445 6-238 (326)
164 PRK00411 cdc6 cell division co 99.4 3.2E-11 7E-16 134.1 20.6 213 213-452 30-263 (394)
165 smart00350 MCM minichromosome 99.4 1.1E-11 2.4E-16 141.9 16.8 179 205-398 195-400 (509)
166 PRK00149 dnaA chromosomal repl 99.4 1.9E-12 4.1E-17 146.4 9.9 170 241-446 149-329 (450)
167 TIGR00362 DnaA chromosomal rep 99.3 2.7E-12 5.9E-17 143.3 10.9 172 240-447 136-318 (405)
168 PRK08903 DnaA regulatory inact 99.3 2.6E-11 5.7E-16 124.5 17.0 170 219-444 26-204 (227)
169 TIGR02329 propionate_PrpR prop 99.3 1.5E-11 3.3E-16 140.1 16.4 212 214-445 213-448 (526)
170 PRK14086 dnaA chromosomal repl 99.3 4.1E-12 8.8E-17 144.7 11.2 169 242-447 316-496 (617)
171 smart00763 AAA_PrkA PrkA AAA d 99.3 2E-11 4.3E-16 131.0 15.4 195 214-424 52-346 (361)
172 COG1224 TIP49 DNA helicase TIP 99.3 4.1E-11 8.9E-16 125.1 16.9 88 308-425 292-391 (450)
173 TIGR03420 DnaA_homol_Hda DnaA 99.3 2.3E-11 4.9E-16 124.6 15.1 176 217-444 21-206 (226)
174 PF06068 TIP49: TIP49 C-termin 99.3 9.9E-12 2.1E-16 131.9 12.5 88 308-425 279-378 (398)
175 COG1221 PspF Transcriptional r 99.3 7.4E-12 1.6E-16 135.9 11.9 214 213-445 78-307 (403)
176 PRK10820 DNA-binding transcrip 99.3 2.6E-11 5.7E-16 139.1 17.0 212 214-444 205-434 (520)
177 TIGR00678 holB DNA polymerase 99.3 2.2E-11 4.7E-16 121.4 14.3 156 239-429 13-183 (188)
178 PF01078 Mg_chelatase: Magnesi 99.3 2.3E-12 5E-17 127.9 6.6 155 213-388 3-205 (206)
179 TIGR02442 Cob-chelat-sub cobal 99.3 3.6E-11 7.7E-16 140.9 16.7 195 214-429 5-264 (633)
180 PRK15429 formate hydrogenlyase 99.3 5.9E-11 1.3E-15 141.0 18.2 212 214-444 377-606 (686)
181 PRK07399 DNA polymerase III su 99.3 2E-11 4.4E-16 130.9 12.8 160 213-397 4-194 (314)
182 PRK05564 DNA polymerase III su 99.3 3.2E-11 6.9E-16 130.0 14.3 156 213-397 4-164 (313)
183 PRK11388 DNA-binding transcrip 99.3 3.7E-11 8E-16 141.8 16.0 210 213-444 325-551 (638)
184 PRK09112 DNA polymerase III su 99.3 3.8E-11 8.3E-16 130.6 14.5 179 214-428 24-231 (351)
185 PRK08727 hypothetical protein; 99.3 4.5E-11 9.7E-16 123.3 14.3 162 241-445 42-210 (233)
186 COG3480 SdrC Predicted secrete 99.3 6.9E-12 1.5E-16 128.7 7.2 110 602-715 218-338 (342)
187 COG0470 HolB ATPase involved i 99.3 2.8E-11 6.1E-16 130.6 11.7 143 214-391 2-174 (325)
188 PRK05642 DNA replication initi 99.2 4E-11 8.6E-16 123.7 11.6 160 241-445 46-214 (234)
189 PRK14088 dnaA chromosomal repl 99.2 1.6E-11 3.4E-16 138.0 9.0 172 241-447 131-313 (440)
190 PRK07471 DNA polymerase III su 99.2 1.4E-10 3.1E-15 126.7 16.1 160 214-397 20-212 (365)
191 PF00308 Bac_DnaA: Bacterial d 99.2 3.3E-11 7.3E-16 123.0 10.1 170 240-446 34-215 (219)
192 PTZ00111 DNA replication licen 99.2 1.3E-10 2.8E-15 136.7 16.1 174 207-396 444-655 (915)
193 PF13177 DNA_pol3_delta2: DNA 99.2 1.6E-11 3.5E-16 119.4 7.2 144 217-386 1-162 (162)
194 TIGR02031 BchD-ChlD magnesium 99.2 7.6E-11 1.7E-15 136.7 13.6 186 240-441 16-229 (589)
195 PF00158 Sigma54_activat: Sigm 99.2 2.3E-11 5.1E-16 118.7 7.4 152 215-381 1-166 (168)
196 cd00009 AAA The AAA+ (ATPases 99.2 1.2E-10 2.6E-15 109.1 11.9 143 217-383 2-150 (151)
197 PRK06620 hypothetical protein; 99.2 8.6E-11 1.9E-15 119.4 11.6 145 241-444 45-194 (214)
198 PRK08058 DNA polymerase III su 99.2 4.7E-11 1E-15 129.4 10.1 159 214-396 6-180 (329)
199 KOG0736 Peroxisome assembly fa 99.2 8.7E-11 1.9E-15 132.7 12.4 178 239-443 430-609 (953)
200 PRK09087 hypothetical protein; 99.2 1.7E-10 3.6E-15 118.3 13.1 151 239-444 43-200 (226)
201 TIGR02915 PEP_resp_reg putativ 99.2 2.4E-10 5.2E-15 129.3 15.6 212 215-445 141-370 (445)
202 PRK04132 replication factor C 99.2 1.4E-10 2.9E-15 137.3 13.6 163 239-443 563-735 (846)
203 PRK10923 glnG nitrogen regulat 99.2 2.7E-10 5.8E-15 129.8 15.4 212 214-444 139-368 (469)
204 PRK14087 dnaA chromosomal repl 99.2 1.8E-10 3.9E-15 129.6 12.2 171 241-444 142-324 (450)
205 PRK05707 DNA polymerase III su 99.1 2.3E-10 4.9E-15 123.5 12.4 140 239-397 21-177 (328)
206 TIGR00368 Mg chelatase-related 99.1 3.2E-10 7E-15 128.4 13.6 156 214-389 193-395 (499)
207 COG0542 clpA ATP-binding subun 99.1 6.4E-10 1.4E-14 129.1 15.0 177 213-425 170-367 (786)
208 COG1474 CDC6 Cdc6-related prot 99.1 9.8E-10 2.1E-14 120.1 15.3 209 215-452 19-246 (366)
209 PRK15115 response regulator Gl 99.1 1E-09 2.2E-14 124.1 15.8 192 239-445 156-365 (444)
210 COG1241 MCM2 Predicted ATPase 99.1 3.8E-10 8.2E-15 129.9 12.2 207 207-429 280-540 (682)
211 KOG2035 Replication factor C, 99.1 6.8E-10 1.5E-14 112.6 12.2 161 239-428 33-219 (351)
212 COG1239 ChlI Mg-chelatase subu 99.1 1.4E-09 3E-14 117.4 15.3 172 212-398 16-232 (423)
213 PRK11361 acetoacetate metaboli 99.1 1.2E-09 2.5E-14 124.0 15.4 190 240-444 166-373 (457)
214 KOG0990 Replication factor C, 99.1 1.2E-10 2.7E-15 120.3 6.2 186 189-424 27-219 (360)
215 COG0606 Predicted ATPase with 99.1 7.1E-10 1.5E-14 121.0 12.0 154 213-390 179-384 (490)
216 PRK06871 DNA polymerase III su 99.1 6.2E-10 1.3E-14 119.4 11.3 139 240-397 24-178 (325)
217 KOG2170 ATPase of the AAA+ sup 99.1 7.6E-10 1.6E-14 113.7 11.1 148 201-367 70-226 (344)
218 TIGR01818 ntrC nitrogen regula 99.1 1.8E-09 4E-14 122.7 15.2 212 215-445 136-365 (463)
219 PF05673 DUF815: Protein of un 99.0 3E-09 6.5E-14 108.0 14.0 179 213-433 27-232 (249)
220 PRK08769 DNA polymerase III su 99.0 7.9E-10 1.7E-14 118.4 10.3 138 240-396 26-183 (319)
221 PRK07993 DNA polymerase III su 99.0 2.7E-09 5.8E-14 115.5 14.1 137 239-396 23-178 (334)
222 KOG0478 DNA replication licens 99.0 2.9E-09 6.3E-14 119.3 14.4 226 207-446 423-699 (804)
223 PRK06964 DNA polymerase III su 99.0 1.6E-09 3.4E-14 117.1 11.7 69 310-397 135-203 (342)
224 COG0593 DnaA ATPase involved i 99.0 2.1E-09 4.6E-14 117.3 12.3 173 240-448 113-295 (408)
225 KOG1942 DNA helicase, TBP-inte 99.0 3.7E-09 8.1E-14 107.7 12.5 89 308-426 297-398 (456)
226 PRK09862 putative ATP-dependen 99.0 1.3E-09 2.9E-14 122.9 10.4 158 214-388 192-391 (506)
227 COG5271 MDN1 AAA ATPase contai 99.0 3.9E-09 8.5E-14 125.4 14.1 149 240-398 1543-1703(4600)
228 PRK06090 DNA polymerase III su 99.0 5.5E-09 1.2E-13 111.8 14.3 139 239-396 24-178 (319)
229 KOG0735 AAA+-type ATPase [Post 99.0 6.7E-09 1.4E-13 116.8 14.7 198 215-448 410-625 (952)
230 KOG1969 DNA replication checkp 99.0 6.6E-09 1.4E-13 117.4 14.8 163 238-428 324-501 (877)
231 TIGR00602 rad24 checkpoint pro 98.9 1.1E-08 2.3E-13 118.5 15.7 223 191-444 72-328 (637)
232 PRK08181 transposase; Validate 98.9 4.9E-09 1.1E-13 109.9 11.6 125 239-387 105-244 (269)
233 KOG0480 DNA replication licens 98.9 8.3E-09 1.8E-13 114.9 13.7 210 205-428 337-590 (764)
234 PF12775 AAA_7: P-loop contain 98.9 5.1E-09 1.1E-13 110.3 11.6 199 240-445 33-253 (272)
235 COG3283 TyrR Transcriptional r 98.9 1.7E-08 3.7E-13 105.6 14.7 185 242-444 229-429 (511)
236 PRK06526 transposase; Provisio 98.9 3.3E-09 7.2E-14 110.5 9.4 127 238-388 96-237 (254)
237 COG5271 MDN1 AAA ATPase contai 98.9 5.4E-08 1.2E-12 116.2 18.5 219 168-429 834-1063(4600)
238 smart00382 AAA ATPases associa 98.9 7.2E-09 1.6E-13 96.0 8.9 133 240-383 2-145 (148)
239 PRK10365 transcriptional regul 98.9 2E-08 4.3E-13 113.5 13.5 192 238-444 160-369 (441)
240 PRK05917 DNA polymerase III su 98.8 7.2E-08 1.6E-12 101.5 15.5 127 240-385 19-154 (290)
241 PRK08699 DNA polymerase III su 98.8 1.5E-08 3.2E-13 109.4 10.5 139 239-396 20-183 (325)
242 PRK09183 transposase/IS protei 98.8 4.2E-09 9.2E-14 110.2 5.0 127 238-387 100-242 (259)
243 TIGR03015 pepcterm_ATPase puta 98.8 2.5E-07 5.5E-12 97.3 18.6 185 240-454 43-249 (269)
244 PRK15455 PrkA family serine pr 98.8 6.9E-08 1.5E-12 108.6 13.2 61 213-273 76-137 (644)
245 KOG2680 DNA helicase TIP49, TB 98.7 2.4E-07 5.2E-12 95.0 14.7 112 308-454 289-412 (454)
246 PRK13406 bchD magnesium chelat 98.7 1.2E-07 2.5E-12 109.6 14.0 179 241-440 26-223 (584)
247 PRK07276 DNA polymerase III su 98.7 5.8E-08 1.3E-12 102.5 10.1 152 217-395 6-172 (290)
248 PRK08116 hypothetical protein; 98.7 4.2E-08 9.1E-13 103.2 8.6 126 240-387 114-251 (268)
249 PF00493 MCM: MCM2/3/5 family 98.7 1.1E-08 2.3E-13 111.0 3.9 177 207-398 18-221 (331)
250 PF05621 TniB: Bacterial TniB 98.7 8.5E-07 1.8E-11 93.1 17.4 221 209-454 30-272 (302)
251 COG3284 AcoR Transcriptional a 98.7 8.2E-08 1.8E-12 108.2 9.9 181 240-444 336-537 (606)
252 PRK06835 DNA replication prote 98.6 2E-07 4.4E-12 100.5 12.6 127 240-387 183-319 (329)
253 PF01695 IstB_IS21: IstB-like 98.6 2.1E-08 4.6E-13 99.0 4.4 114 238-377 45-171 (178)
254 PRK12377 putative replication 98.6 5.1E-08 1.1E-12 101.0 6.9 122 240-386 101-236 (248)
255 KOG0482 DNA replication licens 98.6 1.7E-07 3.7E-12 102.0 10.3 178 204-397 333-538 (721)
256 PF03215 Rad17: Rad17 cell cyc 98.6 1.7E-06 3.7E-11 98.6 17.8 193 219-428 25-254 (519)
257 PRK05818 DNA polymerase III su 98.5 1.5E-07 3.3E-12 97.0 7.4 128 239-385 6-147 (261)
258 COG1484 DnaC DNA replication p 98.5 5.9E-08 1.3E-12 101.2 4.4 116 239-377 104-230 (254)
259 COG2607 Predicted ATPase (AAA+ 98.5 2.2E-06 4.8E-11 86.0 14.6 173 214-428 61-259 (287)
260 PRK07132 DNA polymerase III su 98.5 1.2E-06 2.5E-11 93.4 13.5 135 239-396 17-160 (299)
261 PF06309 Torsin: Torsin; Inte 98.5 3.3E-07 7.2E-12 83.9 7.8 76 202-277 14-95 (127)
262 KOG2227 Pre-initiation complex 98.5 1.4E-06 3.1E-11 94.8 13.8 211 213-454 150-381 (529)
263 PRK07952 DNA replication prote 98.5 1.9E-07 4.1E-12 96.6 6.8 121 241-386 100-235 (244)
264 PF13173 AAA_14: AAA domain 98.4 1.2E-06 2.5E-11 81.7 10.1 118 240-389 2-126 (128)
265 KOG1514 Origin recognition com 98.4 4.4E-06 9.4E-11 95.0 15.6 202 214-448 397-625 (767)
266 PF14532 Sigma54_activ_2: Sigm 98.4 2.2E-07 4.7E-12 87.8 4.4 125 217-385 2-138 (138)
267 KOG0477 DNA replication licens 98.3 5.7E-07 1.2E-11 100.1 6.3 157 210-380 446-626 (854)
268 PF12774 AAA_6: Hydrolytic ATP 98.3 8.1E-07 1.8E-11 91.2 7.0 133 241-394 33-176 (231)
269 KOG0741 AAA+-type ATPase [Post 98.3 4.3E-06 9.3E-11 91.9 12.4 140 238-397 536-685 (744)
270 PF08298 AAA_PrkA: PrkA AAA do 98.3 1.3E-05 2.8E-10 85.8 15.1 59 213-271 61-120 (358)
271 COG4650 RtcR Sigma54-dependent 98.3 4.2E-06 9.1E-11 85.8 9.9 189 241-443 209-422 (531)
272 PF00910 RNA_helicase: RNA hel 98.2 1.4E-06 3.1E-11 78.6 5.6 107 243-365 1-107 (107)
273 KOG0479 DNA replication licens 98.2 6.2E-06 1.4E-10 91.4 10.9 163 207-389 295-489 (818)
274 PRK06921 hypothetical protein; 98.2 2.5E-06 5.5E-11 89.7 7.5 28 239-266 116-143 (266)
275 PF01637 Arch_ATPase: Archaeal 98.1 5.8E-06 1.3E-10 84.2 7.9 183 216-427 2-224 (234)
276 KOG0481 DNA replication licens 98.1 1.6E-05 3.5E-10 87.1 11.4 175 209-398 327-527 (729)
277 TIGR02688 conserved hypothetic 98.1 9.5E-06 2.1E-10 88.9 9.6 87 238-341 207-294 (449)
278 PF13401 AAA_22: AAA domain; P 98.1 3E-06 6.4E-11 78.7 4.3 90 240-336 4-113 (131)
279 COG1116 TauB ABC-type nitrate/ 98.1 3.3E-06 7.2E-11 85.9 4.5 38 238-275 27-64 (248)
280 COG0464 SpoVK ATPases of the A 98.1 2.5E-05 5.4E-10 89.8 12.2 177 238-454 16-203 (494)
281 KOG1051 Chaperone HSP104 and r 98.0 1.6E-05 3.5E-10 94.3 10.4 153 214-396 187-361 (898)
282 PHA00729 NTP-binding motif con 98.0 7.8E-06 1.7E-10 83.0 6.7 119 241-397 18-139 (226)
283 PRK08939 primosomal protein Dn 98.0 1.3E-05 2.9E-10 85.8 8.4 74 239-321 155-231 (306)
284 COG1618 Predicted nucleotide k 98.0 3.1E-05 6.8E-10 73.4 9.2 26 242-267 7-32 (179)
285 KOG1970 Checkpoint RAD17-RFC c 98.0 9.8E-05 2.1E-09 82.1 14.1 38 235-272 105-142 (634)
286 KOG1808 AAA ATPase containing 98.0 2.9E-05 6.4E-10 97.5 10.8 147 241-397 441-598 (1856)
287 PF05729 NACHT: NACHT domain 97.9 7.9E-05 1.7E-09 71.6 10.5 141 242-398 2-163 (166)
288 PRK06581 DNA polymerase III su 97.8 7.7E-05 1.7E-09 75.8 9.6 138 240-398 15-161 (263)
289 PRK12723 flagellar biosynthesi 97.8 0.001 2.3E-08 73.4 17.6 82 239-322 173-269 (388)
290 TIGR03499 FlhF flagellar biosy 97.7 0.0011 2.4E-08 70.4 17.1 75 239-315 193-280 (282)
291 PHA02774 E1; Provisional 97.7 0.00038 8.3E-09 79.1 13.5 120 238-385 432-555 (613)
292 PRK10536 hypothetical protein; 97.7 0.0003 6.5E-09 72.8 11.4 70 187-273 38-109 (262)
293 PF03969 AFG1_ATPase: AFG1-lik 97.7 5.3E-05 1.1E-09 83.0 5.9 125 238-385 60-201 (362)
294 COG4619 ABC-type uncharacteriz 97.6 0.00016 3.4E-09 69.2 7.1 38 238-275 27-64 (223)
295 PRK05703 flhF flagellar biosyn 97.6 0.0021 4.6E-08 72.1 17.3 94 239-336 220-326 (424)
296 PF00931 NB-ARC: NB-ARC domain 97.6 0.00041 8.8E-09 73.5 10.6 154 219-398 2-170 (287)
297 PF13207 AAA_17: AAA domain; P 97.5 7.2E-05 1.6E-09 68.5 3.9 30 242-271 1-30 (121)
298 PF13604 AAA_30: AAA domain; P 97.5 0.00023 5E-09 71.4 7.8 104 239-366 17-133 (196)
299 PF10431 ClpB_D2-small: C-term 97.5 4.9E-05 1.1E-09 64.9 2.4 78 385-486 1-81 (81)
300 COG3842 PotA ABC-type spermidi 97.5 6.4E-05 1.4E-09 81.3 3.7 46 238-284 29-74 (352)
301 KOG2228 Origin recognition com 97.5 0.00057 1.2E-08 72.1 10.4 166 216-398 27-219 (408)
302 PF03266 NTPase_1: NTPase; In 97.5 0.00025 5.5E-09 69.3 7.4 23 242-264 1-23 (168)
303 KOG1968 Replication factor C, 97.5 0.00043 9.4E-09 83.0 10.4 154 242-427 359-521 (871)
304 PRK12726 flagellar biosynthesi 97.5 0.0029 6.3E-08 69.1 15.4 82 238-320 204-298 (407)
305 COG1125 OpuBA ABC-type proline 97.4 0.00026 5.6E-09 72.1 6.7 39 238-276 25-63 (309)
306 PRK07261 topology modulation p 97.4 0.00092 2E-08 65.6 10.6 30 242-271 2-31 (171)
307 PRK14722 flhF flagellar biosyn 97.4 0.0034 7.5E-08 68.8 15.6 82 238-321 135-229 (374)
308 PRK11889 flhF flagellar biosyn 97.4 0.00045 9.7E-09 75.5 8.4 83 239-321 240-334 (436)
309 PF05272 VirE: Virulence-assoc 97.4 0.001 2.2E-08 66.9 10.2 115 241-384 53-169 (198)
310 PHA02624 large T antigen; Prov 97.4 0.00067 1.5E-08 77.5 9.7 124 238-384 429-561 (647)
311 PRK00131 aroK shikimate kinase 97.4 0.00018 3.9E-09 70.1 4.5 33 239-271 3-35 (175)
312 cd01131 PilT Pilus retraction 97.4 0.00034 7.4E-09 70.3 6.6 25 242-266 3-27 (198)
313 COG3854 SpoIIIAA ncharacterize 97.3 0.00031 6.7E-09 70.4 5.3 24 241-264 138-161 (308)
314 KOG3347 Predicted nucleotide k 97.3 0.0002 4.4E-09 67.0 3.7 34 238-271 5-38 (176)
315 PRK04296 thymidine kinase; Pro 97.3 0.0012 2.6E-08 66.0 9.3 25 240-264 2-26 (190)
316 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.3 0.00033 7.1E-09 66.7 5.0 38 238-275 24-61 (144)
317 TIGR01613 primase_Cterm phage/ 97.3 0.002 4.4E-08 69.2 11.7 155 209-384 45-203 (304)
318 COG5245 DYN1 Dynein, heavy cha 97.3 0.00045 9.7E-09 83.7 6.8 153 239-398 1493-1658(3164)
319 cd00267 ABC_ATPase ABC (ATP-bi 97.2 0.00031 6.8E-09 67.7 4.4 39 238-276 23-61 (157)
320 cd03216 ABC_Carb_Monos_I This 97.2 0.00045 9.8E-09 67.2 5.5 38 238-275 24-61 (163)
321 PRK08118 topology modulation p 97.2 0.00029 6.2E-09 68.9 4.1 31 242-272 3-33 (167)
322 cd03222 ABC_RNaseL_inhibitor T 97.2 0.00053 1.1E-08 67.7 6.0 38 238-275 23-60 (177)
323 PRK06995 flhF flagellar biosyn 97.2 0.0083 1.8E-07 68.0 15.9 26 239-264 255-280 (484)
324 COG3267 ExeA Type II secretory 97.2 0.017 3.7E-07 59.3 16.5 186 239-453 50-255 (269)
325 PF13191 AAA_16: AAA ATPase do 97.2 0.00028 6E-09 69.4 3.7 58 215-275 2-62 (185)
326 PF07693 KAP_NTPase: KAP famil 97.2 0.0047 1E-07 66.8 13.3 117 310-444 175-319 (325)
327 PRK13947 shikimate kinase; Pro 97.1 0.00039 8.5E-09 67.8 4.1 31 242-272 3-33 (171)
328 PLN03210 Resistant to P. syrin 97.1 0.0033 7.2E-08 79.6 13.3 52 213-268 184-235 (1153)
329 COG0703 AroK Shikimate kinase 97.1 0.00035 7.7E-09 67.8 3.6 32 241-272 3-34 (172)
330 cd03246 ABCC_Protease_Secretio 97.1 0.00052 1.1E-08 67.3 4.9 38 238-275 26-63 (173)
331 cd01128 rho_factor Transcripti 97.1 0.001 2.2E-08 69.2 7.2 31 236-266 12-42 (249)
332 COG3839 MalK ABC-type sugar tr 97.1 0.00033 7.1E-09 75.4 3.6 38 238-275 27-64 (338)
333 PRK00625 shikimate kinase; Pro 97.1 0.00042 9.1E-09 68.1 4.1 31 242-272 2-32 (173)
334 PRK03839 putative kinase; Prov 97.1 0.00042 9.1E-09 68.4 4.0 30 242-271 2-31 (180)
335 cd00227 CPT Chloramphenicol (C 97.1 0.00045 9.7E-09 67.9 4.1 34 240-273 2-35 (175)
336 cd01130 VirB11-like_ATPase Typ 97.1 0.0016 3.5E-08 64.7 8.0 36 238-273 23-58 (186)
337 PF13671 AAA_33: AAA domain; P 97.1 0.00055 1.2E-08 64.5 4.5 30 242-273 1-30 (143)
338 cd01120 RecA-like_NTPases RecA 97.1 0.00068 1.5E-08 64.7 5.1 33 242-274 1-36 (165)
339 cd03228 ABCC_MRP_Like The MRP 97.1 0.00059 1.3E-08 66.8 4.7 38 238-275 26-63 (171)
340 cd00464 SK Shikimate kinase (S 97.0 0.00052 1.1E-08 65.5 3.8 31 242-272 1-31 (154)
341 TIGR01420 pilT_fam pilus retra 97.0 0.0015 3.3E-08 71.4 7.5 28 239-266 121-148 (343)
342 PRK14530 adenylate kinase; Pro 97.0 0.00066 1.4E-08 69.1 4.3 30 240-269 3-32 (215)
343 PRK14974 cell division protein 97.0 0.0071 1.5E-07 65.7 12.4 27 239-265 139-165 (336)
344 PRK13695 putative NTPase; Prov 97.0 0.003 6.5E-08 62.0 8.7 23 242-264 2-24 (174)
345 TIGR01618 phage_P_loop phage n 97.0 0.001 2.3E-08 67.7 5.4 22 240-261 12-33 (220)
346 PHA01747 putative ATP-dependen 97.0 0.0019 4.1E-08 69.3 7.4 85 239-339 189-274 (425)
347 PRK06696 uridine kinase; Valid 97.0 0.0019 4.1E-08 66.2 7.3 43 238-280 20-65 (223)
348 COG1120 FepC ABC-type cobalami 96.9 0.0007 1.5E-08 70.2 4.0 38 238-275 26-63 (258)
349 PRK13949 shikimate kinase; Pro 96.9 0.00072 1.6E-08 66.3 3.8 31 242-272 3-33 (169)
350 PRK08233 hypothetical protein; 96.9 0.0018 3.9E-08 63.6 6.6 26 240-265 3-28 (182)
351 cd03214 ABC_Iron-Siderophores_ 96.9 0.0014 3.1E-08 64.7 5.9 38 238-275 23-60 (180)
352 PRK14723 flhF flagellar biosyn 96.9 0.012 2.5E-07 69.9 14.1 82 239-322 184-278 (767)
353 cd03223 ABCD_peroxisomal_ALDP 96.9 0.0016 3.4E-08 63.6 5.9 37 238-274 25-61 (166)
354 TIGR01360 aden_kin_iso1 adenyl 96.9 0.001 2.3E-08 65.7 4.6 29 240-268 3-31 (188)
355 PRK13948 shikimate kinase; Pro 96.9 0.0011 2.4E-08 65.7 4.6 35 238-272 8-42 (182)
356 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0038 8.3E-08 65.7 8.9 28 239-266 79-106 (264)
357 PRK12724 flagellar biosynthesi 96.9 0.042 9.1E-07 61.0 17.1 26 239-264 222-247 (432)
358 PRK12727 flagellar biosynthesi 96.9 0.024 5.1E-07 64.6 15.4 83 238-321 348-442 (559)
359 TIGR02788 VirB11 P-type DNA tr 96.8 0.0028 6.1E-08 68.2 7.9 32 238-269 142-173 (308)
360 TIGR00150 HI0065_YjeE ATPase, 96.8 0.0025 5.3E-08 59.7 6.4 30 238-267 20-49 (133)
361 PF14516 AAA_35: AAA-like doma 96.8 0.018 3.9E-07 62.7 14.1 167 238-427 29-229 (331)
362 PRK06762 hypothetical protein; 96.8 0.0013 2.7E-08 64.0 4.6 32 241-272 3-34 (166)
363 TIGR02858 spore_III_AA stage I 96.8 0.0016 3.5E-08 68.6 5.6 35 241-275 112-146 (270)
364 PRK14532 adenylate kinase; Pro 96.8 0.00098 2.1E-08 66.2 3.9 28 242-269 2-29 (188)
365 PRK06217 hypothetical protein; 96.8 0.0012 2.5E-08 65.5 4.1 30 242-271 3-32 (183)
366 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.00098 2.1E-08 65.8 3.5 31 243-275 2-32 (183)
367 cd02020 CMPK Cytidine monophos 96.8 0.001 2.3E-08 62.7 3.6 30 243-272 2-31 (147)
368 TIGR00767 rho transcription te 96.8 0.0014 3.1E-08 71.9 5.0 31 237-267 165-195 (415)
369 COG1102 Cmk Cytidylate kinase 96.8 0.0012 2.7E-08 62.8 3.9 29 242-270 2-30 (179)
370 cd02021 GntK Gluconate kinase 96.8 0.0011 2.3E-08 63.3 3.5 27 243-269 2-28 (150)
371 PF00437 T2SE: Type II/IV secr 96.7 0.002 4.3E-08 68.0 5.5 91 223-318 114-208 (270)
372 PRK14531 adenylate kinase; Pro 96.7 0.0015 3.3E-08 64.7 4.4 29 242-270 4-32 (183)
373 PF12780 AAA_8: P-loop contain 96.7 0.01 2.2E-07 62.5 10.7 165 218-399 13-211 (268)
374 PF13245 AAA_19: Part of AAA d 96.7 0.0023 5.1E-08 53.9 4.9 25 240-264 10-35 (76)
375 COG1124 DppF ABC-type dipeptid 96.7 0.0013 2.9E-08 66.8 3.9 39 238-276 31-69 (252)
376 PRK05057 aroK shikimate kinase 96.7 0.0016 3.4E-08 64.0 4.4 33 240-272 4-36 (172)
377 COG1373 Predicted ATPase (AAA+ 96.7 0.0091 2E-07 66.6 10.9 120 242-393 39-162 (398)
378 COG1118 CysA ABC-type sulfate/ 96.7 0.0012 2.7E-08 69.0 3.7 174 238-428 26-209 (345)
379 PRK14737 gmk guanylate kinase; 96.7 0.0039 8.5E-08 62.1 7.1 26 239-264 3-28 (186)
380 TIGR01313 therm_gnt_kin carboh 96.7 0.0011 2.4E-08 64.2 3.1 26 243-268 1-26 (163)
381 COG4133 CcmA ABC-type transpor 96.7 0.0065 1.4E-07 59.5 8.2 38 238-275 26-63 (209)
382 PF05707 Zot: Zonular occluden 96.7 0.0099 2.2E-07 59.5 9.9 126 242-383 2-144 (193)
383 COG1126 GlnQ ABC-type polar am 96.7 0.0015 3.3E-08 65.3 3.8 38 238-275 26-63 (240)
384 PRK03731 aroL shikimate kinase 96.6 0.0019 4.2E-08 63.0 4.3 31 242-272 4-34 (171)
385 PRK14527 adenylate kinase; Pro 96.6 0.0017 3.6E-08 64.9 3.9 32 238-269 4-35 (191)
386 COG1134 TagH ABC-type polysacc 96.6 0.0039 8.4E-08 63.5 6.4 39 238-276 51-89 (249)
387 PRK14721 flhF flagellar biosyn 96.6 0.051 1.1E-06 60.7 15.8 79 238-318 189-280 (420)
388 PRK09376 rho transcription ter 96.6 0.0019 4.1E-08 70.7 4.4 31 236-266 165-195 (416)
389 COG0563 Adk Adenylate kinase a 96.6 0.002 4.3E-08 63.6 4.1 27 242-268 2-28 (178)
390 PRK13946 shikimate kinase; Pro 96.6 0.0019 4.1E-08 64.1 3.9 33 240-272 10-42 (184)
391 cd02019 NK Nucleoside/nucleoti 96.6 0.0029 6.3E-08 52.2 4.4 22 243-264 2-23 (69)
392 PF00519 PPV_E1_C: Papillomavi 96.6 0.003 6.5E-08 68.4 5.6 122 236-385 258-383 (432)
393 PRK10416 signal recognition pa 96.6 0.033 7.2E-07 60.2 13.6 29 238-266 112-140 (318)
394 COG4586 ABC-type uncharacteriz 96.6 0.00026 5.5E-09 72.8 -2.4 39 238-276 48-86 (325)
395 PTZ00202 tuzin; Provisional 96.6 0.016 3.5E-07 64.0 11.1 162 214-400 263-436 (550)
396 PRK06547 hypothetical protein; 96.6 0.0022 4.8E-08 63.0 4.2 33 238-270 13-45 (172)
397 PRK10078 ribose 1,5-bisphospho 96.6 0.0018 3.9E-08 64.4 3.5 29 240-268 2-30 (186)
398 cd01428 ADK Adenylate kinase ( 96.5 0.0019 4.2E-08 64.2 3.6 27 243-269 2-28 (194)
399 PRK00771 signal recognition pa 96.5 0.077 1.7E-06 59.7 16.5 81 239-321 94-189 (437)
400 KOG0058 Peptide exporter, ABC 96.5 0.0054 1.2E-07 71.0 7.4 39 238-276 492-530 (716)
401 PRK14700 recombination factor 96.5 0.0099 2.1E-07 62.7 8.8 82 355-442 7-90 (300)
402 PF10923 DUF2791: P-loop Domai 96.5 0.054 1.2E-06 60.2 14.9 133 297-444 229-391 (416)
403 TIGR02525 plasmid_TraJ plasmid 96.5 0.0037 8E-08 68.8 5.8 26 240-265 149-174 (372)
404 COG1936 Predicted nucleotide k 96.5 0.0019 4E-08 62.4 3.0 29 242-271 2-30 (180)
405 PRK08154 anaerobic benzoate ca 96.5 0.0041 9E-08 67.0 6.1 35 238-272 131-165 (309)
406 PF13238 AAA_18: AAA domain; P 96.5 0.002 4.3E-08 59.2 3.2 22 243-264 1-22 (129)
407 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.5 0.0025 5.4E-08 64.9 4.1 38 238-275 28-65 (218)
408 PTZ00088 adenylate kinase 1; P 96.5 0.0029 6.3E-08 65.1 4.4 29 241-269 7-35 (229)
409 PLN02200 adenylate kinase fami 96.5 0.0028 6.1E-08 65.4 4.3 33 241-275 44-76 (234)
410 PRK02496 adk adenylate kinase; 96.4 0.0027 5.8E-08 62.9 4.0 28 242-269 3-30 (184)
411 PRK13900 type IV secretion sys 96.4 0.011 2.5E-07 64.2 9.0 29 239-267 159-187 (332)
412 TIGR00235 udk uridine kinase. 96.4 0.0033 7.2E-08 63.6 4.6 38 238-275 4-42 (207)
413 PF04665 Pox_A32: Poxvirus A32 96.4 0.033 7.2E-07 57.4 11.8 136 241-397 14-169 (241)
414 PRK14528 adenylate kinase; Pro 96.4 0.003 6.6E-08 62.8 4.2 28 242-269 3-30 (186)
415 PRK04040 adenylate kinase; Pro 96.4 0.0034 7.4E-08 62.6 4.5 35 241-275 3-37 (188)
416 PF01745 IPT: Isopentenyl tran 96.4 0.0036 7.9E-08 62.5 4.6 31 242-272 3-33 (233)
417 KOG2543 Origin recognition com 96.4 0.013 2.8E-07 63.2 8.9 63 211-276 4-66 (438)
418 TIGR02322 phosphon_PhnN phosph 96.4 0.0027 5.9E-08 62.4 3.7 26 241-266 2-27 (179)
419 PRK12608 transcription termina 96.4 0.0066 1.4E-07 66.3 6.7 31 236-266 129-159 (380)
420 COG3840 ThiQ ABC-type thiamine 96.4 0.0043 9.3E-08 60.4 4.7 38 238-275 23-60 (231)
421 TIGR02782 TrbB_P P-type conjug 96.4 0.0086 1.9E-07 64.2 7.5 26 240-265 132-157 (299)
422 PRK05541 adenylylsulfate kinas 96.4 0.0035 7.5E-08 61.6 4.1 29 238-266 5-33 (176)
423 TIGR00960 3a0501s02 Type II (G 96.4 0.0033 7.1E-08 63.9 4.1 38 238-275 27-64 (216)
424 TIGR02237 recomb_radB DNA repa 96.4 0.0057 1.2E-07 61.8 5.8 38 238-275 10-50 (209)
425 PRK09825 idnK D-gluconate kina 96.3 0.0037 8E-08 61.7 4.2 28 239-266 2-29 (176)
426 PRK04182 cytidylate kinase; Pr 96.3 0.0036 7.9E-08 61.3 4.0 29 242-270 2-30 (180)
427 TIGR01448 recD_rel helicase, p 96.3 0.0072 1.6E-07 72.5 7.1 25 241-265 339-363 (720)
428 cd03261 ABC_Org_Solvent_Resist 96.3 0.0036 7.8E-08 64.5 4.0 38 238-275 24-61 (235)
429 COG1485 Predicted ATPase [Gene 96.3 0.0086 1.9E-07 64.1 6.7 122 238-386 63-205 (367)
430 TIGR03574 selen_PSTK L-seryl-t 96.3 0.0023 5E-08 66.7 2.5 23 243-265 2-24 (249)
431 TIGR01166 cbiO cobalt transpor 96.3 0.0039 8.4E-08 62.1 4.0 38 238-275 16-53 (190)
432 cd03258 ABC_MetN_methionine_tr 96.3 0.0036 7.8E-08 64.4 3.9 38 238-275 29-66 (233)
433 cd03283 ABC_MutS-like MutS-lik 96.3 0.0064 1.4E-07 61.2 5.6 25 240-264 25-49 (199)
434 PRK05480 uridine/cytidine kina 96.3 0.006 1.3E-07 61.7 5.3 38 238-275 4-42 (209)
435 cd03292 ABC_FtsE_transporter F 96.2 0.0042 9.1E-08 63.0 4.2 38 238-275 25-62 (214)
436 cd03269 ABC_putative_ATPase Th 96.2 0.004 8.7E-08 63.0 4.0 38 238-275 24-61 (210)
437 COG4525 TauB ABC-type taurine 96.2 0.0041 8.9E-08 61.1 3.8 38 238-275 29-66 (259)
438 TIGR01351 adk adenylate kinase 96.2 0.0038 8.3E-08 63.3 3.8 28 243-270 2-29 (210)
439 cd03225 ABC_cobalt_CbiO_domain 96.2 0.0039 8.4E-08 63.1 3.9 38 238-275 25-62 (211)
440 PRK00300 gmk guanylate kinase; 96.2 0.0042 9.2E-08 62.5 4.1 28 238-265 3-30 (205)
441 PF00005 ABC_tran: ABC transpo 96.2 0.0026 5.7E-08 59.4 2.4 38 238-275 9-46 (137)
442 COG2274 SunT ABC-type bacterio 96.2 0.0068 1.5E-07 72.0 6.4 39 238-276 497-535 (709)
443 cd03262 ABC_HisP_GlnQ_permease 96.2 0.004 8.6E-08 63.1 3.9 38 238-275 24-61 (213)
444 TIGR02315 ABC_phnC phosphonate 96.2 0.0041 9E-08 64.4 4.1 38 238-275 26-63 (243)
445 cd03260 ABC_PstB_phosphate_tra 96.2 0.0057 1.2E-07 62.7 5.0 38 238-275 24-66 (227)
446 TIGR03608 L_ocin_972_ABC putat 96.2 0.0042 9.2E-08 62.5 4.0 38 238-275 22-59 (206)
447 PLN02165 adenylate isopentenyl 96.2 0.0042 9E-08 66.9 4.1 32 238-269 41-72 (334)
448 PRK13541 cytochrome c biogenes 96.2 0.0044 9.5E-08 62.0 4.1 38 238-275 24-61 (195)
449 PF13479 AAA_24: AAA domain 96.2 0.011 2.4E-07 60.1 7.1 74 240-319 3-80 (213)
450 COG2884 FtsE Predicted ATPase 96.2 0.0034 7.3E-08 61.5 3.0 48 238-286 26-73 (223)
451 cd03229 ABC_Class3 This class 96.2 0.0047 1E-07 60.9 4.1 38 238-275 24-61 (178)
452 PRK13851 type IV secretion sys 96.2 0.015 3.2E-07 63.5 8.3 29 239-267 161-189 (344)
453 COG1136 SalX ABC-type antimicr 96.2 0.0035 7.5E-08 63.8 3.2 38 238-275 29-66 (226)
454 PRK11629 lolD lipoprotein tran 96.2 0.0046 9.9E-08 63.7 4.2 38 238-275 33-70 (233)
455 TIGR02673 FtsE cell division A 96.2 0.0043 9.4E-08 62.9 3.9 38 238-275 26-63 (214)
456 cd03226 ABC_cobalt_CbiO_domain 96.2 0.0046 1E-07 62.3 4.1 38 238-275 24-61 (205)
457 PRK08485 DNA polymerase III su 96.2 0.038 8.2E-07 55.0 10.3 68 310-396 57-137 (206)
458 cd03256 ABC_PhnC_transporter A 96.2 0.0043 9.4E-08 64.1 4.0 38 238-275 25-62 (241)
459 TIGR03263 guanyl_kin guanylate 96.2 0.0035 7.5E-08 61.7 3.1 27 240-266 1-27 (180)
460 cd03224 ABC_TM1139_LivF_branch 96.2 0.0039 8.4E-08 63.6 3.5 38 238-275 24-61 (222)
461 PLN02674 adenylate kinase 96.2 0.0073 1.6E-07 62.6 5.5 35 239-275 30-64 (244)
462 PRK13833 conjugal transfer pro 96.2 0.014 3.1E-07 63.0 7.9 88 240-336 144-237 (323)
463 cd03301 ABC_MalK_N The N-termi 96.2 0.0049 1.1E-07 62.5 4.1 38 238-275 24-61 (213)
464 TIGR02211 LolD_lipo_ex lipopro 96.2 0.0045 9.8E-08 63.1 3.9 38 238-275 29-66 (221)
465 PRK13540 cytochrome c biogenes 96.1 0.0051 1.1E-07 61.8 4.2 38 238-275 25-62 (200)
466 cd03263 ABC_subfamily_A The AB 96.1 0.0046 1E-07 63.0 3.9 38 238-275 26-63 (220)
467 cd03247 ABCC_cytochrome_bd The 96.1 0.0052 1.1E-07 60.6 4.1 38 238-275 26-63 (178)
468 PRK00279 adk adenylate kinase; 96.1 0.005 1.1E-07 62.7 4.1 29 242-270 2-30 (215)
469 COG1419 FlhF Flagellar GTP-bin 96.1 0.012 2.5E-07 64.6 7.0 82 239-322 202-296 (407)
470 PRK00889 adenylylsulfate kinas 96.1 0.0049 1.1E-07 60.5 3.9 28 238-265 2-29 (175)
471 COG0410 LivF ABC-type branched 96.1 0.0038 8.2E-08 63.1 3.0 38 238-275 27-64 (237)
472 cd03296 ABC_CysA_sulfate_impor 96.1 0.005 1.1E-07 63.7 4.1 38 238-275 26-63 (239)
473 cd03293 ABC_NrtD_SsuB_transpor 96.1 0.0048 1E-07 62.9 3.9 38 238-275 28-65 (220)
474 PRK11432 fbpC ferric transport 96.1 0.0048 1E-07 67.7 4.1 38 238-275 30-67 (351)
475 TIGR02533 type_II_gspE general 96.1 0.014 3E-07 66.7 8.0 28 239-266 241-268 (486)
476 TIGR03410 urea_trans_UrtE urea 96.1 0.0044 9.5E-08 63.6 3.6 38 238-275 24-61 (230)
477 cd02027 APSK Adenosine 5'-phos 96.1 0.0058 1.3E-07 58.5 4.2 23 242-264 1-23 (149)
478 PRK10867 signal recognition pa 96.1 0.12 2.5E-06 58.2 15.1 40 239-278 99-142 (433)
479 PRK05800 cobU adenosylcobinami 96.1 0.012 2.6E-07 57.7 6.5 78 242-319 3-88 (170)
480 PF02562 PhoH: PhoH-like prote 96.1 0.0082 1.8E-07 60.4 5.4 24 241-264 20-43 (205)
481 cd03219 ABC_Mj1267_LivG_branch 96.1 0.0045 9.7E-08 63.8 3.6 38 238-275 24-61 (236)
482 PRK13538 cytochrome c biogenes 96.1 0.005 1.1E-07 62.1 3.8 38 238-275 25-62 (204)
483 PRK13764 ATPase; Provisional 96.1 0.0092 2E-07 69.3 6.4 29 239-267 256-284 (602)
484 cd03235 ABC_Metallic_Cations A 96.1 0.0044 9.6E-08 62.8 3.4 38 238-275 23-60 (213)
485 cd03257 ABC_NikE_OppD_transpor 96.1 0.0048 1E-07 63.2 3.7 38 238-275 29-66 (228)
486 PRK10584 putative ABC transpor 96.1 0.0057 1.2E-07 62.7 4.2 38 238-275 34-71 (228)
487 PRK11124 artP arginine transpo 96.1 0.0056 1.2E-07 63.4 4.2 38 238-275 26-63 (242)
488 PF02190 LON: ATP-dependent pr 96.1 0.018 3.8E-07 57.6 7.7 54 39-92 152-205 (205)
489 PRK13894 conjugal transfer ATP 96.1 0.016 3.5E-07 62.6 7.7 26 239-264 147-172 (319)
490 cd03265 ABC_DrrA DrrA is the A 96.1 0.0057 1.2E-07 62.3 4.1 38 238-275 24-61 (220)
491 PRK10247 putative ABC transpor 96.1 0.0057 1.2E-07 62.7 4.1 38 238-275 31-68 (225)
492 PRK11248 tauB taurine transpor 96.0 0.0054 1.2E-07 64.2 3.9 38 238-275 25-62 (255)
493 PRK05439 pantothenate kinase; 96.0 0.048 1E-06 58.5 11.1 41 239-279 85-130 (311)
494 COG4175 ProV ABC-type proline/ 96.0 0.011 2.3E-07 62.3 6.0 38 238-275 52-89 (386)
495 TIGR03864 PQQ_ABC_ATP ABC tran 96.0 0.0059 1.3E-07 63.0 4.1 38 238-275 25-62 (236)
496 PF01443 Viral_helicase1: Vira 96.0 0.0063 1.4E-07 62.3 4.3 22 243-264 1-22 (234)
497 cd03259 ABC_Carb_Solutes_like 96.0 0.006 1.3E-07 61.8 4.1 38 238-275 24-61 (213)
498 PRK14526 adenylate kinase; Pro 96.0 0.0063 1.4E-07 61.8 4.2 27 242-268 2-28 (211)
499 TIGR02173 cyt_kin_arch cytidyl 96.0 0.0061 1.3E-07 59.2 4.0 29 242-270 2-30 (171)
500 PLN02199 shikimate kinase 96.0 0.0065 1.4E-07 64.2 4.4 34 239-272 101-134 (303)
No 1
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-148 Score=1225.71 Aligned_cols=652 Identities=53% Similarity=0.852 Sum_probs=632.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHccCChhHHHHHHHhcCCCCHHHHHHhhhccCHHHHHHHHHHHHH
Q 004834 12 DPDFIALSRQFKATAMELISVLEQKQKTGGRTKVLLETVPIHKLADIFVASFEISFEEQLVMLDSVDLKVRLSKATELVD 91 (728)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~lLd~~~~~~r~~~~~~~l~ 91 (728)
+.+.+|+.+.+...|++|++.++. .+.+.+..+.++++|++|||++|++++++.+++|++|++.+...||+..+..+.
T Consensus 125 ~~~~~al~~~i~~~~~~~~~l~~~--~~~e~l~~~~~i~~~~klad~iaa~l~~~~~~kQ~iLe~~~v~~Rlek~l~~l~ 202 (782)
T COG0466 125 EREIEALVRSILSEFEEYAKLNKK--IPPEELQSLNSIDDPGKLADTIAAHLPLKLEEKQEILETLDVKERLEKLLDLLE 202 (782)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccC--CCHHHHHHHhcccchHHHHHHHHHhCCCCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 567899999999999999998753 677888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Q 004834 92 RHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDEDDLVALERKMQSAGMPSNIWKHVQKELRRLKKM 171 (728)
Q Consensus 92 ~~~~~~~~e~~~~~~~~~~~~~~~r~~~l~eql~~i~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~el~~l~~~ 171 (728)
.++..+++|++|.++++.+++++||+|||+||+++||+|||..++..+++.+++++++...||+++++.+++|+++|+.+
T Consensus 203 ~ei~~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~~~e~~~~~~kie~~~~p~evk~k~~~El~kL~~m 282 (782)
T COG0466 203 KEIDLLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGEDDDDKDEVEELREKIEKLKLPKEAKEKAEKELKKLETM 282 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999887666899999999999999999999999999999999
Q ss_pred CCCCCCCchhHHHHHHHHcCCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCC
Q 004834 172 QPQQPGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGV 251 (728)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGt 251 (728)
+|++++++++|+|++|++.+||...+.+ ..|+.+++++|+++|||++++|+||++|+++..+.+..+||++||+|||||
T Consensus 283 ~~~SaE~~ViRnYlDwll~lPW~~~sk~-~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGV 361 (782)
T COG0466 283 SPMSAEATVIRNYLDWLLDLPWGKRSKD-KLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGV 361 (782)
T ss_pred CCCCchHHHHHHHHHHHHhCCCccccch-hhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCC
Confidence 9999999999999999999999999998 999999999999999999999999999999999988899999999999999
Q ss_pred ChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHH
Q 004834 252 GKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASAL 331 (728)
Q Consensus 252 GKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~L 331 (728)
|||+|+++||++++++|+|++++|.+|+++++|||++|+|++||++.+.+++++..|||++||||||++.+.+|||.++|
T Consensus 362 GKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSAL 441 (782)
T COG0466 362 GKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASAL 441 (782)
T ss_pred CchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCcc
Q 004834 332 LEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSE 411 (728)
Q Consensus 332 l~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~ 411 (728)
|++||++||..|.|||++.++|+|+|+||||+|..+++|.||+|||++|.+++|+++|+.+|+++||.|++++++|+...
T Consensus 442 LEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~ 521 (782)
T COG0466 442 LEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKG 521 (782)
T ss_pred HhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCceeEeeccC
Q 004834 412 FLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPM 491 (728)
Q Consensus 412 ~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ 491 (728)
.+.++|+++..+++.|++|+|||+|+|.|.++||+++.+++.+. .
T Consensus 522 el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~--~--------------------------------- 566 (782)
T COG0466 522 ELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKK--E--------------------------------- 566 (782)
T ss_pred ceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcC--c---------------------------------
Confidence 99999999999999999999999999999999999999998751 1
Q ss_pred CCcccccccccccCCceeechhhhhhhcCCCccCchHHHhhhcCCceeEeeEEeecCceeEEEEEEEecCCceEEEeecc
Q 004834 492 GESTHEVSNTFRITSPLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEATAMRGKGELHLTGQL 571 (728)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~It~~~L~~~Lg~~~~~~~~~~~~~~~~G~~~gl~~~~~gg~~~~iE~~~~~G~~~~~~tG~~ 571 (728)
...+.|+.++|++|||++.|.. +...+++++|+|+|||||++||.+++||+..+||+|++++||++
T Consensus 567 -------------k~~~~i~~~~l~~yLG~~~f~~-~~~~~~~~vGvVtGLAWT~vGGd~L~IE~~~~~Gkg~l~lTG~L 632 (782)
T COG0466 567 -------------KSIVKIDEKNLKKYLGVPVFRY-GKAEEEDQVGVVTGLAWTEVGGDLLTIEAVKMPGKGKLTLTGSL 632 (782)
T ss_pred -------------ccceeeCHHHHHHHhCCcccCc-cccccCCCCeeEeeeeeecCCceEEEEEEEEecCCccEEEeccH
Confidence 1125899999999999999999 78888999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhhhccchhcccCCCCCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCeEEEee
Q 004834 572 GDVIKESAQIALTWVRARATDLQLVAEDGMNLLQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGE 651 (728)
Q Consensus 572 ~~~~kES~~~a~~~~~~~~~~l~~~~~~~~~~~~~~di~i~~~~g~~~kdGpsaglaia~allSa~~~~~v~~~~a~tGE 651 (728)
|+|||||+++|+||+|+++..+++ +..||.+.|||||+|.|++||||||||+|||+||+|+++++||++++|||||
T Consensus 633 GdVMKESa~~A~s~vrs~a~~~~i----~~~~fek~dIHiHVPeGAtPKDGPSAGitm~TAlvS~lt~~~V~~~vAMTGE 708 (782)
T COG0466 633 GDVMKESAQAALSYVRSRAEKLGI----DPDFFEKRDIHIHVPEGATPKDGPSAGITMATALVSLLTGKPVRADVAMTGE 708 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC----CcccccccceEEECCCCCCCCCCcchHHHHHHHHHHHHhCCCCCCCccceee
Confidence 999999999999999999999997 5678999999999999999999999999999999999999999999999999
Q ss_pred eCCCceeeecCCHHHHHHHHHHcCCCeeeccccCccccccchHhhhCCcEEEEeCCHHHHHHHHHcCC
Q 004834 652 MTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGG 719 (728)
Q Consensus 652 i~L~G~V~~Vggi~~ki~~A~~~G~~~viiP~~n~~d~~~ip~~~~~~i~i~~v~~~~e~~~~~~~~~ 719 (728)
|||+|+|+||||++||++||+|+|+++||+|++|.+|+.++|++++++++|++|++++||++++|...
T Consensus 709 ITLrG~VLpIGGLKEKllAA~R~GIk~viiP~~N~~DleeiP~~vk~~l~i~~V~~~~eVl~~al~~~ 776 (782)
T COG0466 709 ITLRGRVLPIGGLKEKLLAAHRGGIKTVIIPKDNERDLEEIPDNVKEGLEIHPVKTIDEVLKLALVGN 776 (782)
T ss_pred EEeeeceeecccHHHHHHHHHhcCCcEEeccccccccHHhCCHHHHcCCeEEEeccHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999864
No 2
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-137 Score=1124.76 Aligned_cols=699 Identities=47% Similarity=0.759 Sum_probs=635.6
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHccCChhHHHHHHHhcCCCCHHHHHHhhhccCHHHHHH
Q 004834 5 EMEQVEQDPDFIALSRQFKATAMELISVLEQKQKTGGRTKVLLETVPIHKLADIFVASFEISFEEQLVMLDSVDLKVRLS 84 (728)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~lLd~~~~~~r~~ 84 (728)
+-.|...+.++.|+..++..++.++++.+.........+..+....+|.+|||+.++....+..+.|++|++.+...|++
T Consensus 203 ~~e~~~~~~~~ka~~~ei~~t~rdii~~n~l~r~~v~~~~~~~~~~~~~~LaD~~aai~~~~~~elq~vL~~~di~~Rl~ 282 (906)
T KOG2004|consen 203 KDEPFKKDEEIKALTSEILKTLRDIIAVNSLFREQVATLSQLIVEDNPIKLADFGAAISGAEFHELQEVLEETDIEKRLE 282 (906)
T ss_pred cCCccCcchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccChhHHHHHHHHHhccCHHHHHHHHHhcCHHHHHH
Confidence 34566667779999999999999999887433333344555778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCCHHHHHHHHH
Q 004834 85 KATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDED-DLVALERKMQSAGMPSNIWKHVQK 163 (728)
Q Consensus 85 ~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~r~~~l~eql~~i~~el~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~ 163 (728)
+.+..++++++..+++.+|.+++++++.+.+|+|.|+||++.|++|||.+.+.++ ....+++++....+|+.+.+.+++
T Consensus 283 ~al~llkke~e~~klq~ki~k~vE~k~~~~~r~ylL~eQlk~IKkeLg~e~Ddkd~~~~~~~er~~~~~~P~~v~kv~~e 362 (906)
T KOG2004|consen 283 KALELLKKELELAKLQQKIGKEVEEKIKQDHREYLLREQLKAIKKELGIEKDDKDALVEKFRERIKSLKMPDHVLKVIDE 362 (906)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHhhCCCccchhhHHHHHHHHhhhccCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998866555 566799999999999999999999
Q ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHcCCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEE
Q 004834 164 ELRRLKKMQPQQPGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVL 243 (728)
Q Consensus 164 el~~l~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~l 243 (728)
|+.+|+.+++++++|+++|+|++|++.+||++.+.+ ++++..+++.|+++|||++++|+||++|+++..+++...|+++
T Consensus 363 El~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S~E-n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIl 441 (906)
T KOG2004|consen 363 ELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTE-NLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKIL 441 (906)
T ss_pred HHHHHhccCccccchhHHHHHHHHHHhCCCCCCChh-hhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCCCcEE
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecccccCCCC
Q 004834 244 CFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDV 323 (728)
Q Consensus 244 LL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~ 323 (728)
||+||||+|||+++++||++|++.|+|++++|..|+++|+||+++|+|++||++.+++++.+..||+++||||||+....
T Consensus 442 Cf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~ 521 (906)
T KOG2004|consen 442 CFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGH 521 (906)
T ss_pred EEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHH
Q 004834 324 RGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVL 403 (728)
Q Consensus 324 ~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~ 403 (728)
+|||.++||++||++||..|.|||+++|+|+|+|+||||+|..+.||++|+|||++|++++|..+|+.+|+++||.|+++
T Consensus 522 qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~ 601 (906)
T KOG2004|consen 522 QGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQAL 601 (906)
T ss_pred CCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCc
Q 004834 404 DQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAE 483 (728)
Q Consensus 404 ~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 483 (728)
..+|+...++.++++++..|+++||+|+|||+|++.|+++||++|+++++....+ +......++.....+
T Consensus 602 ~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~Rk~Al~vv~~~~~~----------~~~~~~~~~~~~~~~ 671 (906)
T KOG2004|consen 602 KDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKICRKVALKVVEGENSK----------EESAEKNGRESTEKS 671 (906)
T ss_pred HHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccc----------ccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999984311 000011111111111
Q ss_pred eeEeeccCCCcccccccccccCCceeechhhhhhhcCCCccCchHHHhhhcCCceeEeeEEeecCceeEEEEEEEecCC-
Q 004834 484 VEMEVIPMGESTHEVSNTFRITSPLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEATAMRGK- 562 (728)
Q Consensus 484 v~~~~~~~~~~~~~~~~~~~~~~~~~It~~~L~~~Lg~~~~~~~~~~~~~~~~G~~~gl~~~~~gg~~~~iE~~~~~G~- 562 (728)
+.... .++....-......++.|++++|.+|+|||.|.. ++.++...||||.|||||.+||..++||++.+.|.
T Consensus 672 ~e~~~----~~t~~~~~~~~~~~~i~I~~~nL~d~lG~P~f~~-e~~y~~tp~GVvmGLaWT~mGG~~lyvEts~~~~~~ 746 (906)
T KOG2004|consen 672 IEEAE----SSTSGADLLPEMPENIEIDESNLQDILGPPVFTS-ERMYEVTPPGVVMGLAWTAMGGSTLYVETSLMRGLG 746 (906)
T ss_pred ccccc----ccCcccccccCCcceeeecHHHHHHHhCCCcccH-HHHhccCCCeeEEEEEEecCCCeEEEEEEEEeccCC
Confidence 11100 0000000011113468899999999999999977 89999899999999999999999999999998866
Q ss_pred -ceEEEeeccchHHHHHHHHHHHHHHHHhhhccchhcccCCCCCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCC
Q 004834 563 -GELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMNLLQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKR 641 (728)
Q Consensus 563 -~~~~~tG~~~~~~kES~~~a~~~~~~~~~~l~~~~~~~~~~~~~~di~i~~~~g~~~kdGpsaglaia~allSa~~~~~ 641 (728)
|.+.+||+||+|||||+++|++|.|+.+.... +...||.+.+||+|+|+|++||||||||++|++|++|.++++|
T Consensus 747 ~g~l~~TGqLGDVMKESa~iA~t~ar~~~~~~~----p~n~~l~~~~IHlH~PeGAtpKDGPSAGvTmvTsLlSLa~~kp 822 (906)
T KOG2004|consen 747 DGSLEITGQLGDVMKESAQIAYTWARAFLSKKE----PENKFLENSDIHLHVPEGATPKDGPSAGVTMVTALLSLALGKP 822 (906)
T ss_pred CCceEEecchHHHHHHHHHHHHHHHHHHHHhhC----cccchhcccceeeeccCCCCCCcCCcccchhHHHHHHHhhCCc
Confidence 77999999999999999999999998776544 3556799999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeeCCCceeeecCCHHHHHHHHHHcCCCeeeccccCccccccchHhhhCCcEEEEeCCHHHHHHHHHcCCCC
Q 004834 642 VRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGGCP 721 (728)
Q Consensus 642 v~~~~a~tGEi~L~G~V~~Vggi~~ki~~A~~~G~~~viiP~~n~~d~~~ip~~~~~~i~i~~v~~~~e~~~~~~~~~~~ 721 (728)
|++|+||||||||+|.|+||||++||++||+|.|+|+||+|.+|.+|+.++|+.+++++++++|++++|+++.+|.+.++
T Consensus 823 Vr~d~AMTGEvtLtGkVLpiGGiKEK~iAA~Rsg~k~ii~P~~N~~D~~elp~~vkegLev~~a~~yedv~~~aF~~~~~ 902 (906)
T KOG2004|consen 823 VRQDLAMTGEVTLTGKVLPVGGIKEKTIAARRSGVKTIIFPEANRRDFEELPENVKEGLEVHFAETYEDVFEAAFDDGPT 902 (906)
T ss_pred chhhhHhhcccccccceeccCchHHHHHHHHhcCCeEEEccccchhhHHhhhhhhhccceEEeHHHHHHHHHHHhCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CC
Q 004834 722 WR 723 (728)
Q Consensus 722 ~~ 723 (728)
+.
T Consensus 903 ~~ 904 (906)
T KOG2004|consen 903 EK 904 (906)
T ss_pred hc
Confidence 43
No 3
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=100.00 E-value=1.4e-113 Score=1009.17 Aligned_cols=651 Identities=47% Similarity=0.763 Sum_probs=613.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHccCChhHHHHHHHhcCCCCHHHHHHhhhccCHHHHHHHHHHHHH
Q 004834 12 DPDFIALSRQFKATAMELISVLEQKQKTGGRTKVLLETVPIHKLADIFVASFEISFEEQLVMLDSVDLKVRLSKATELVD 91 (728)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~lLd~~~~~~r~~~~~~~l~ 91 (728)
..+.+++.+.+++.+.+|.+..+ ..+.+.+..+.+++||++|+|.+|++++++++++|.||++.+...|++..+..|+
T Consensus 124 ~~e~~al~~~ll~~~~~~~~l~~--~~~~e~~~~~~~~ddp~~Lad~iA~~Lpl~~~eKQ~LLE~~d~~eRLe~Ll~lL~ 201 (784)
T PRK10787 124 EREQEVLVRTAISQFEGYIKLNK--KIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMME 201 (784)
T ss_pred chHHHHHHHHHHHHHHHHHHhcc--cCCHHHHhhhhccccHHHHHHHHHHHCCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 34667899999999999998764 2345666677889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Q 004834 92 RHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDEDDLVALERKMQSAGMPSNIWKHVQKELRRLKKM 171 (728)
Q Consensus 92 ~~~~~~~~e~~~~~~~~~~~~~~~r~~~l~eql~~i~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~el~~l~~~ 171 (728)
++++.++++++|.++++++++++||+|+|||||+.||+|||+..+..+++++++++++.+++|+++.+.+.+|++|++++
T Consensus 202 ~Eleil~l~~~I~~~v~~~~~k~q~e~~lreq~~~i~~elg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 281 (784)
T PRK10787 202 SEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKMPKEAKEKAEAELQKLKMM 281 (784)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhhhcccccCCCcchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999876667889999999999999999999999999999999
Q ss_pred CCCCCCCchhHHHHHHHHcCCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCC
Q 004834 172 QPQQPGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGV 251 (728)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGt 251 (728)
++.+++++++|+|++|++++||++.+.+ ..++..+++.|+++|||++++|++|.++++........+++++||+|||||
T Consensus 282 ~~~~~e~~~~~~yl~~~~~~pw~~~~~~-~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~ 360 (784)
T PRK10787 282 SPMSAEATVVRGYIDWMVQVPWNARSKV-KKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGV 360 (784)
T ss_pred CCCCchHHHHHHHHHHHHhCCCCCCCcc-cccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCC
Confidence 9999999999999999999999999988 899999999999999999999999999999876655567889999999999
Q ss_pred ChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHH
Q 004834 252 GKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASAL 331 (728)
Q Consensus 252 GKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~L 331 (728)
|||++++++|+.++++++++++++..+.+++.||+++|+|..+|.+.+.+..++..+||+||||+|+++++.++|++++|
T Consensus 361 GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aL 440 (784)
T PRK10787 361 GKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASAL 440 (784)
T ss_pred CHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888999999999999999899999999
Q ss_pred HHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCcc
Q 004834 332 LEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSE 411 (728)
Q Consensus 332 l~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~ 411 (728)
+++||++|+..|.|+|++.++|+++++||||+|.. .++++|++||++|.|++|+.+++.+|++++|.+++++++++...
T Consensus 441 levld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~ 519 (784)
T PRK10787 441 LEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKG 519 (784)
T ss_pred HHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCC
Confidence 99999999999999999999999999999999998 59999999999999999999999999999999999999998888
Q ss_pred ccccCHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCceeEeeccC
Q 004834 412 FLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPM 491 (728)
Q Consensus 412 ~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ 491 (728)
.+.++++++.++++.|++++|+|+|+|.|+++||+.+.+.+.+ +.
T Consensus 520 ~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~--~~--------------------------------- 564 (784)
T PRK10787 520 ELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLD--KS--------------------------------- 564 (784)
T ss_pred eEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhc--CC---------------------------------
Confidence 8999999999999999999999999999999999988876644 00
Q ss_pred CCcccccccccccCCceeechhhhhhhcCCCccCchHHHhhhcCCceeEeeEEeecCceeEEEEEEEecCCceEEEeecc
Q 004834 492 GESTHEVSNTFRITSPLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEATAMRGKGELHLTGQL 571 (728)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~It~~~L~~~Lg~~~~~~~~~~~~~~~~G~~~gl~~~~~gg~~~~iE~~~~~G~~~~~~tG~~ 571 (728)
..++.|+.+++++|||+++|.. +.....+.||+|+|||||++||.+++||++++||+|++.+||++
T Consensus 565 -------------~~~v~v~~~~~~~~lg~~~~~~-~~~~~~~~~G~~~gla~t~~gg~~l~iE~~~~~g~g~~~~tG~l 630 (784)
T PRK10787 565 -------------LKHIEINGDNLHDYLGVQRFDY-GRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSL 630 (784)
T ss_pred -------------CceeeecHHHHHHHhCCCcccc-chhhcCCCceEEEEeEEeCCCeEEEEEEEEEecCCceEEEecCc
Confidence 1246899999999999999998 66667788999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhhhccchhcccCCCCCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCeEEEee
Q 004834 572 GDVIKESAQIALTWVRARATDLQLVAEDGMNLLQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGE 651 (728)
Q Consensus 572 ~~~~kES~~~a~~~~~~~~~~l~~~~~~~~~~~~~~di~i~~~~g~~~kdGpsaglaia~allSa~~~~~v~~~~a~tGE 651 (728)
|++||||+++|++|+|+++..+++ +..+|.++|||||+|.|+.+|||||||+|+++|++|+++++|+++++|||||
T Consensus 631 g~vmkes~~~A~~~~~~~~~~~~~----~~~~~~~~Di~i~v~~g~~~~dgpsagla~~~Al~S~~~~~pv~~~~a~tGE 706 (784)
T PRK10787 631 GEVMQESIQAALTVVRARAEKLGI----NPDFYEKRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGE 706 (784)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC----CcccccCceEEEEecCCCCCCCCCchHHHHHHHHHHHhhCCCCCCCeEEEEE
Confidence 999999999999999999999886 3456789999999999999999999999999999999999999999999999
Q ss_pred eCCCceeeecCCHHHHHHHHHHcCCCeeeccccCccccccchHhhhCCcEEEEeCCHHHHHHHHHcCC
Q 004834 652 MTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGG 719 (728)
Q Consensus 652 i~L~G~V~~Vggi~~ki~~A~~~G~~~viiP~~n~~d~~~ip~~~~~~i~i~~v~~~~e~~~~~~~~~ 719 (728)
|+|+|+|+||||+++|+.+|+|+|+++|+||.+|.+|+.++|++++.+++|++|+|++||++.+|...
T Consensus 707 i~L~G~V~pVggl~eki~~A~r~G~k~viiP~~n~~~~~~~~~~~~~~i~i~~v~~~~ea~~~~~~~~ 774 (784)
T PRK10787 707 ITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNE 774 (784)
T ss_pred ecCCeeEEeeCCHHHHHHHHHHCCCCEEEEChhhhhhhhhccHHhcCCcEEEEeCCHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999998643
No 4
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=100.00 E-value=4.2e-109 Score=981.58 Aligned_cols=657 Identities=54% Similarity=0.870 Sum_probs=614.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHccCChhHHHHHHHhcCCCC-HHHHHHhhhccCHHHHHHHHHHH
Q 004834 11 QDPDFIALSRQFKATAMELISVLEQKQKTGGRTKVLLETVPIHKLADIFVASFEIS-FEEQLVMLDSVDLKVRLSKATEL 89 (728)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~-~~~~~~lLd~~~~~~r~~~~~~~ 89 (728)
++.++.++.+.+++.+.+|....+....+.+.+..+.++.||.+|+|.+|++++++ ++++|.+|++.+...|++..+..
T Consensus 118 ~~~e~~al~~~l~~~~~el~~l~~l~~~~~e~~~~~~~~~dp~~Lad~ia~~L~l~~~~eKQ~LLE~~d~~~RL~~l~~l 197 (775)
T TIGR00763 118 DDEEIKALTREIKETFRELISLSKLFREQPALLSALEDIDEPGRLADFVAASLQLKEKDELQEVLETVNIEKRLKKALEL 197 (775)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCccccCCHHHHHHHhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45678999999999999999876421334556666778899999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 004834 90 VDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDEDDLVALERKMQSAGMPSNIWKHVQKELRRLK 169 (728)
Q Consensus 90 l~~~~~~~~~e~~~~~~~~~~~~~~~r~~~l~eql~~i~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~el~~l~ 169 (728)
|+++++.++++++|.++++++++++||+|+||||+++|++|||+..+.+++++++++++..+.+|+++.+.+.+|++|++
T Consensus 198 L~~ele~l~l~~~I~~~v~~~~~~~qr~~~Lreqlk~i~~eLg~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~ 277 (775)
T TIGR00763 198 LKKELELLKLQNKITKKVEEKMEKTQREYYLREQLKAIKKELGIEKDDKDELEKLKEKLEELKLPEEVKKVIEKELTKLS 277 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998766678899999999999999999999999999999
Q ss_pred hcCCCCCCCchhHHHHHHHHcCCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCC
Q 004834 170 KMQPQQPGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPP 249 (728)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPp 249 (728)
++++.++++.++++|++|++++||.+.+.+ ..++..+++.|+++|+|+++++++|.++++.....+..+++++||+|||
T Consensus 278 ~~~~~~~~~~~~~~yl~~~~~ip~~~~~~~-~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~Gpp 356 (775)
T TIGR00763 278 LLEPSSSEFTVTRNYLDWLTDLPWGKYSKE-NLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPP 356 (775)
T ss_pred cCCCCCchHHHHHHHHHHHHCCCCcccccc-hhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCC
Confidence 999999999999999999999999998888 9999999999999999999999999999998877666778899999999
Q ss_pred CCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHH
Q 004834 250 GVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPAS 329 (728)
Q Consensus 250 GtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~ 329 (728)
|||||++|+++|+.++.+++++++++..+.+++.|++++|+|+.+|.+.+.+..+...+||+||||||+++++.++++.+
T Consensus 357 G~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~ 436 (775)
T TIGR00763 357 GVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPAS 436 (775)
T ss_pred CCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999888788999999999999988899999
Q ss_pred HHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCC
Q 004834 330 ALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLG 409 (728)
Q Consensus 330 ~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~ 409 (728)
+|+++||+.++..|.|++.+.++|+++++||+|||..+.++++|++||++|.|++|+.+++.+|++.++.+++++.+++.
T Consensus 437 aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~ 516 (775)
T TIGR00763 437 ALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLK 516 (775)
T ss_pred HHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccCHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCceeEeec
Q 004834 410 SEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVI 489 (728)
Q Consensus 410 ~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~ 489 (728)
...+.++++++.++++.|++++|+|+|+|.|+++||+++.+++... . ...++
T Consensus 517 ~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~~~~~~~~~--~-------------------~~~~~------- 568 (775)
T TIGR00763 517 PDELKITDEALLLLIKYYTREAGVRNLERQIEKICRKAAVKLVEQG--E-------------------KKKSE------- 568 (775)
T ss_pred cceEEECHHHHHHHHHhcChhcCChHHHHHHHHHHHHHHHHHHhcc--C-------------------cccCC-------
Confidence 8889999999999999999999999999999999999998887530 1 00010
Q ss_pred cCCCcccccccccccCCceeechhhhhhhcCCCccCchHHHhhhcCCceeEeeEEeecCceeEEEEEEEecCCceEEEee
Q 004834 490 PMGESTHEVSNTFRITSPLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEATAMRGKGELHLTG 569 (728)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~It~~~L~~~Lg~~~~~~~~~~~~~~~~G~~~gl~~~~~gg~~~~iE~~~~~G~~~~~~tG 569 (728)
...+.|+++++++|+|+|+|.. +...+.+.||+|+|+||+++||.+++||+++++|.|++++||
T Consensus 569 ---------------~~~v~i~~~~~~~~lg~~~~~~-~~~~~~~~~G~v~gla~~~~~g~~~~iE~~~~~G~~~~~~tG 632 (775)
T TIGR00763 569 ---------------AESVVITPDNLKKYLGKPVFTY-ERAYEVTPPGVVMGLAWTPMGGDTLFIETTKVAGKGSLELTG 632 (775)
T ss_pred ---------------cccccCCHHHHHHhcCcccccc-chhccCCCCeEEEEEEEeCCCcEEEEEEEEEeCCCceEEEeC
Confidence 1236799999999999999998 666677889999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhccchhcccCCCCCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCeEEE
Q 004834 570 QLGDVIKESAQIALTWVRARATDLQLVAEDGMNLLQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMT 649 (728)
Q Consensus 570 ~~~~~~kES~~~a~~~~~~~~~~l~~~~~~~~~~~~~~di~i~~~~g~~~kdGpsaglaia~allSa~~~~~v~~~~a~t 649 (728)
++|++||||+++|++|+++++.++++. ..+|+++|||||+|+|+++|||||||+|||+||+|+++++|++++++||
T Consensus 633 ~~~~~~kES~~~a~~~v~~~~~~~~~~----~~~~~~~di~v~~~~g~~~k~Gpsa~laia~al~sa~~~~~v~~~~~~~ 708 (775)
T TIGR00763 633 QLGDVMKESAQIALTYVRSIAADLGIS----PNFFEKADIHLHVPEGATPKDGPSAGITMATALLSLATGKPVRPDVAMT 708 (775)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHcCCC----ccccCCeEEEEEcCCcccCCCCCcchHHHHHHHHHHccCCCCCCCEEEE
Confidence 999999999999999999999999873 3457999999999999999999999999999999999999999999999
Q ss_pred eeeCCCceeeecCCHHHHHHHHHHcCCCeeeccccCccccccchHhhhCCcEEEEeCCHHHHHHHHH
Q 004834 650 GEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAF 716 (728)
Q Consensus 650 GEi~L~G~V~~Vggi~~ki~~A~~~G~~~viiP~~n~~d~~~ip~~~~~~i~i~~v~~~~e~~~~~~ 716 (728)
|||+|+|+|+||||+++|+.+|+++|+++||+|.+|.+|+.++|+++..++++++|+|+.||+..+|
T Consensus 709 GEi~L~G~v~pv~g~~~k~~~A~~~G~~~viiP~~n~~~~~~~p~~~~~~~~i~~v~~l~e~~~~~~ 775 (775)
T TIGR00763 709 GEITLRGKVLPIGGLKEKTIAAKRAGIKTIILPEKNRRDLEELPENVKEGLEIHFVKHYDEVLKKAF 775 (775)
T ss_pred EEecCCceEEEeCCHHHHHHHHHHCCCCEEEECccchhhhhhchHhhcCCCEEEEeCCHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999875
No 5
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=100.00 E-value=6.4e-53 Score=480.26 Aligned_cols=405 Identities=28% Similarity=0.381 Sum_probs=309.1
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh----------CCCeEEEecCCcc-c----
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVK-D---- 278 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l----------~~~~~~i~~~~~~-~---- 278 (728)
+++|++..++.+...+. ...+.+++|+||||||||++|+++++.+ +.+|+.++++... +
T Consensus 66 ~iiGqs~~i~~l~~al~------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~ 139 (531)
T TIGR02902 66 EIIGQEEGIKALKAALC------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGI 139 (531)
T ss_pred HeeCcHHHHHHHHHHHh------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCcccc
Confidence 58999999888876532 1345689999999999999999998753 2578888886421 1
Q ss_pred hhhhccC--ccccccCCc----c---hHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCC--
Q 004834 279 EADIRGH--RRTYIGSMP----G---RLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHY-- 347 (728)
Q Consensus 279 ~s~l~g~--~~~yvG~~~----g---~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~-- 347 (728)
...+.|. .+.|.|... | .....+..+ .+.++|||||+.+++.. ++.|+++|+..+...-...|
T Consensus 140 ~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a--~gG~L~IdEI~~L~~~~----q~~LL~~Le~~~~~~~~~~~~~ 213 (531)
T TIGR02902 140 ADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA--HGGVLFIDEIGELHPVQ----MNKLLKVLEDRKVFLDSAYYNS 213 (531)
T ss_pred chhhcCCcccchhccccccccCCcccccCchhhcc--CCcEEEEechhhCCHHH----HHHHHHHHHhCeeeeccccccc
Confidence 1122221 122322210 0 001122222 35699999999999887 99999999864321000000
Q ss_pred --------------CCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCcccc
Q 004834 348 --------------LNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFL 413 (728)
Q Consensus 348 --------------~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~ 413 (728)
.+.+.|+. ++++|+|.++.++|++++||..|.|++|+.+++.+|+++.+. +. .+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~d~r--lI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~-----k~-----~i 281 (531)
T TIGR02902 214 ENPNIPSHIHDIFQNGLPADFR--LIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAE-----KI-----GI 281 (531)
T ss_pred cCcccccchhhhcccCcccceE--EEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHH-----Hc-----CC
Confidence 12344443 666788899999999999999999999999999999988742 22 36
Q ss_pred ccCHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCceeEeeccCCC
Q 004834 414 QIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGE 493 (728)
Q Consensus 414 ~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~ 493 (728)
.+++++++.+.. |++ +. |.+.++|+.|+..+..+
T Consensus 282 ~is~~al~~I~~-y~~--n~----Rel~nll~~Aa~~A~~~--------------------------------------- 315 (531)
T TIGR02902 282 NLEKHALELIVK-YAS--NG----REAVNIVQLAAGIALGE--------------------------------------- 315 (531)
T ss_pred CcCHHHHHHHHH-hhh--hH----HHHHHHHHHHHHHHhhC---------------------------------------
Confidence 799999997754 665 23 44555555555432221
Q ss_pred cccccccccccCCceeechhhhhhhcCCCccCch--HHHhhhcCCceeEeeEEee-cCceeEEEEEEEec--CCc-eEEE
Q 004834 494 STHEVSNTFRITSPLVVDEAMLEKVLGPPRFDDR--EAAERVAAPGISVGLVWTN-FGGEVQFVEATAMR--GKG-ELHL 567 (728)
Q Consensus 494 ~~~~~~~~~~~~~~~~It~~~L~~~Lg~~~~~~~--~~~~~~~~~G~~~gl~~~~-~gg~~~~iE~~~~~--G~~-~~~~ 567 (728)
....|+.++++++++.++|... ....+.+++|+++|++|+| .+|.+++|||++.+ |.+ .+.+
T Consensus 316 ------------~~~~It~~dI~~vl~~~~~~~~~~~~~~~~~~vg~v~glav~g~~~g~~v~vE~~~~~~~~~~g~~~i 383 (531)
T TIGR02902 316 ------------GRKRILAEDIEWVAENGNYHPKPEIKLSSEPQIGRVNGLAVYGPNSGAVLEVEATAERAENLPGSINV 383 (531)
T ss_pred ------------CCcEEcHHHHHHHhCCcccccchhhhcccCCceEEEEEEEEEcCCceEEEEEEEEEecCCCCCCeEEE
Confidence 1236999999999999998762 2334467889999999998 68999999999988 544 8999
Q ss_pred eeccch--------------HHHHHHHHHHHHHHHHhhhccchhcccCCCCCcccEEEEccCCCCCCCCchhHHHHHHHH
Q 004834 568 TGQLGD--------------VIKESAQIALTWVRARATDLQLVAEDGMNLLQGRDIHIHFPAGAVPKDGPSAGVTLVTAL 633 (728)
Q Consensus 568 tG~~~~--------------~~kES~~~a~~~~~~~~~~l~~~~~~~~~~~~~~di~i~~~~g~~~kdGpsaglaia~al 633 (728)
||+++. +++||++++++++++.+ |+. ++++|||||+ ++++||||||||+|||+|+
T Consensus 384 ~G~~~~~~~~~~~~~~~~k~~~~es~~~v~~~l~~~~---g~~-------~~~~di~vn~-p~~~~k~Gpsadlaia~ai 452 (531)
T TIGR02902 384 TGIIEEEEIGGSGKSVRRKSSARGSVENVLAVLRSVF---GIN-------PQNYDIHINF-PGGIPVDGPSAGVAIAVAI 452 (531)
T ss_pred EeccCccccccchhhhhHHHHHHHHHHHHHHHHHHhc---CCC-------CCCeeEEEEc-CCCCCCCCccHHHHHHHHH
Confidence 999987 88999999999998632 432 7899999998 5679999999999999999
Q ss_pred HHhccCCCCCCCeEEEeeeCCCceeeecCCHHHHHHHHHHcCCCeeeccccCcccc-ccchHhhhCCcEEEEeCCHHHHH
Q 004834 634 VSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDL-VEVPAAVLASLEIILAKRMEDVL 712 (728)
Q Consensus 634 lSa~~~~~v~~~~a~tGEi~L~G~V~~Vggi~~ki~~A~~~G~~~viiP~~n~~d~-~~ip~~~~~~i~i~~v~~~~e~~ 712 (728)
+|++.++|++++++|||||+|+|+|+||||+.+|+.+|+++|+++||||.+|..++ ..+ .+++|++|+|+.||+
T Consensus 453 lsa~~~~~~~~~~a~~GElsL~G~v~pV~Gv~~ki~~A~~~G~~~viiP~~n~~e~~~~~-----~~i~v~~v~~l~e~~ 527 (531)
T TIGR02902 453 YSAIFKCPIDNKVAMTGEISLNGLVKPVGGVPSKIEAAKKAGAKKVIIPYENWQESFGSI-----SGINVIPVKNIDEAL 527 (531)
T ss_pred HHHccCCCCCCCEEEEEEecCCceEeccCCHHHHHHHHHHcCCCEEEECHHHHHHHhhcc-----CCcEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999998876 323 499999999999999
Q ss_pred HHHH
Q 004834 713 EQAF 716 (728)
Q Consensus 713 ~~~~ 716 (728)
.++|
T Consensus 528 ~~~~ 531 (531)
T TIGR02902 528 NYAL 531 (531)
T ss_pred HHhC
Confidence 9875
No 6
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=100.00 E-value=2.2e-50 Score=465.80 Aligned_cols=499 Identities=27% Similarity=0.436 Sum_probs=342.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Q 004834 83 LSKATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDEDDLVALERKMQSAGMPSNIWKHVQ 162 (728)
Q Consensus 83 ~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~r~~~l~eql~~i~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 162 (728)
++...+++-..+..-.+|.++.+++.+++++.|.+|.-+-++..++++.+-+. ...+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------------------- 126 (615)
T TIGR02903 70 LEDTEDHIADILARRTVENRIERKVETRMQERQNKYLEEIRLQVLKEEKGPEN--SSTL--------------------- 126 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcc--HHHH---------------------
Confidence 33444555555666677778888888888888887766666666666533221 1111
Q ss_pred HHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCE
Q 004834 163 KELRRLKKMQPQQPGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPV 242 (728)
Q Consensus 163 ~el~~l~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~ 242 (728)
+++++++.+.... ..+.+.+.+. | ..+ .+++|++.+.+.+...++. ..+.+
T Consensus 127 ~~~~~l~~~~~~~----~~~~~~~~~r--p-------~~~----------~~iiGqs~~~~~l~~~ia~------~~~~~ 177 (615)
T TIGR02903 127 KKLERLEKLEKKK----LHKSAQSLLR--P-------RAF----------SEIVGQERAIKALLAKVAS------PFPQH 177 (615)
T ss_pred HHHHHHHHHHHHH----hhhHHhhhcC--c-------CcH----------HhceeCcHHHHHHHHHHhc------CCCCe
Confidence 1122222211000 0011000000 0 011 1578999988887765531 23457
Q ss_pred EEEEcCCCCChhHHHHHHHHHh----------CCCeEEEecCCcc-chhhhccCccccccCCcchHH----HHHhhc---
Q 004834 243 LCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVK-DEADIRGHRRTYIGSMPGRLI----DGLKRV--- 304 (728)
Q Consensus 243 lLL~GPpGtGKT~LakalA~~l----------~~~~~~i~~~~~~-~~s~l~g~~~~yvG~~~g~l~----~~~~~a--- 304 (728)
++|+|||||||||+|+++++.. +.+|+.+++.... +...+. ..+.|....... ..+...
T Consensus 178 vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~---~~llg~~~~~~~~~a~~~l~~~gl~ 254 (615)
T TIGR02903 178 IILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVT---NPLLGSVHDPIYQGARRDLAETGVP 254 (615)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHh---HHhcCCccHHHHHHHHHHHHHcCCC
Confidence 9999999999999999998776 2467888876542 111110 011222111110 011100
Q ss_pred --------CCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCC-----------eee---cCCCcEEEE-
Q 004834 305 --------GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLN-----------VPF---DLSKVIFVA- 361 (728)
Q Consensus 305 --------~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~-----------~~~---d~~~vi~I~- 361 (728)
...++++||||++.+.+.. +..|+.+|+..+.. +.+.+.. ..+ ...++++|+
T Consensus 255 ~~~~g~v~~asgGvL~LDEi~~Ld~~~----Q~~Ll~~Le~~~v~-~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~a 329 (615)
T TIGR02903 255 EPKTGLVTDAHGGVLFIDEIGELDPLL----QNKLLKVLEDKRVE-FSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGA 329 (615)
T ss_pred chhcCchhhcCCCeEEEeccccCCHHH----HHHHHHHHhhCeEE-eecceeccCCcccchhhhhhcccCccceEEEEEe
Confidence 1134699999999998876 89999999764321 1111100 000 112234444
Q ss_pred ecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHH
Q 004834 362 TANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLA 441 (728)
Q Consensus 362 TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~ 441 (728)
|+|.+..++++|++||..+.|++++.+++..|+++.+. +. .+.+++++++.|.+ |+++ | |..-+.|+
T Consensus 330 Tt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~-----~~-----~v~ls~eal~~L~~-ys~~-g-Rraln~L~ 396 (615)
T TIGR02903 330 TTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE-----KI-----NVHLAAGVEELIAR-YTIE-G-RKAVNILA 396 (615)
T ss_pred ccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHHH-CCCc-H-HHHHHHHH
Confidence 66778899999999999999999999999999998642 22 25688998888765 6652 3 43334555
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCceeEeeccCCCcccccccccccCCceeechhhhhhhcCC
Q 004834 442 ALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRITSPLVVDEAMLEKVLGP 521 (728)
Q Consensus 442 ~l~r~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~It~~~L~~~Lg~ 521 (728)
.++..+..+.... .. + .....|+.++++++++.
T Consensus 397 ~~~~~~~~~~~~~--~~---------------------~------------------------~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 397 DVYGYALYRAAEA--GK---------------------E------------------------NDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHHHHHHh--cc---------------------C------------------------CCCeeECHHHHHHHhCC
Confidence 5554332221100 00 0 12357999999999999
Q ss_pred CccCc--hHHHhhhcCCceeEeeEEeecCceeEEEEEEEe----cCCceEEEeeccchHHHHHHHHHHHHHHHHhhhccc
Q 004834 522 PRFDD--REAAERVAAPGISVGLVWTNFGGEVQFVEATAM----RGKGELHLTGQLGDVIKESAQIALTWVRARATDLQL 595 (728)
Q Consensus 522 ~~~~~--~~~~~~~~~~G~~~gl~~~~~gg~~~~iE~~~~----~G~~~~~~tG~~~~~~kES~~~a~~~~~~~~~~l~~ 595 (728)
++|.. .....++..+|+++|++|++++|.++.|||.++ ||.+.+.++|..++.+|||++.|++|++++ .++
T Consensus 430 ~r~~~~~~~~~~~~~~~g~v~~~~~~g~~g~~v~vE~~~~~~g~pg~~~vgl~~~~~~e~kerv~~A~~~l~~~---~g~ 506 (615)
T TIGR02903 430 SRLSPYEKRKASPTYEVGHVFGLGVSGFVGSVLEIEAVAFEAKEPGKGTVRFNDTAGSMAKDSVFNAASVIRKI---TGK 506 (615)
T ss_pred CcCccchhhhccCCCCcEEEEEEEEeCCCcEEEEEEEEEecCCCCCCceEeeCCcchHHHHHHHHHHHHHHHHh---CCC
Confidence 99863 134455677899999999999999999999993 677778888889999999999999999963 232
Q ss_pred hhcccCCCCCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCeEEEeeeCCCceeeecCCHHHHHHHHHHcC
Q 004834 596 VAEDGMNLLQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYG 675 (728)
Q Consensus 596 ~~~~~~~~~~~~di~i~~~~g~~~kdGpsaglaia~allSa~~~~~v~~~~a~tGEi~L~G~V~~Vggi~~ki~~A~~~G 675 (728)
. |+++|||||+++|+ +|+|||+|||||+|++|++.++|++++++|||||+|+|+|+||||+.+|+.+|++.|
T Consensus 507 ~-------~~~~di~vnl~~~~-~k~gpsadLaia~ailSa~~~~~~~~~~~~~GElsL~G~v~pV~Gi~~~i~~A~~~G 578 (615)
T TIGR02903 507 D-------LSNYDIHVNVIGGG-RIDGPSAGAAITLCMISAILGKPIRQDVAITGEISLRGKIKPVGGIFEKIYGAKQAG 578 (615)
T ss_pred C-------CCCeeEEEEcCCCC-CCCCchHHHHHHHHHHHhccCCCCCCCEEEEEEecCCceEEeeCCHHHHHHHHHHCC
Confidence 2 89999999997776 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeccccCccccccchHhhhCCcEEEEeCCHHHHHHHHH
Q 004834 676 IKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAF 716 (728)
Q Consensus 676 ~~~viiP~~n~~d~~~ip~~~~~~i~i~~v~~~~e~~~~~~ 716 (728)
+++||||++|..++... ..+++|++|+|+.||++++|
T Consensus 579 ~~~viiP~~n~~e~~~~----~~~i~i~~v~~l~e~~~~~~ 615 (615)
T TIGR02903 579 IKTVVIPEENLKDVPQG----LPGIEVKFVSTIEELMRIVF 615 (615)
T ss_pred CCEEEECHHHHHHHhhc----cCCcEEEEeCCHHHHHHHhC
Confidence 99999999998876211 13899999999999999876
No 7
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=100.00 E-value=9.4e-49 Score=448.29 Aligned_cols=353 Identities=27% Similarity=0.389 Sum_probs=274.2
Q ss_pred CCcEEEEecccccCCCCCCCHHHHHHHhcCccccccccc--C-------CCCeeecCCCcEEEEecCCC--CCCChhhhC
Q 004834 307 CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFND--H-------YLNVPFDLSKVIFVATANRA--QPIPPPLLD 375 (728)
Q Consensus 307 ~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d--~-------~~~~~~d~~~vi~I~TtN~~--~~l~~~Ll~ 375 (728)
.+++|||||++.+.+.. +..|+++|...+...... . ....+. ++.+|+++|.. ..++|+|..
T Consensus 226 nGGtL~LDei~~L~~~~----q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~---dvrvI~a~~~~ll~~~dpdL~~ 298 (637)
T PRK13765 226 HKGVLFIDEINTLDLES----QQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPC---DFIMVAAGNLDALENMHPALRS 298 (637)
T ss_pred CCcEEEEeChHhCCHHH----HHHHHHHHHhCCEEecccccccccccCCCcceee---eeEEEEecCcCHHHhhhHHHHH
Confidence 34699999999997765 899999997654322110 0 111223 34678888875 578999999
Q ss_pred Cee---E-EEcCCC---CHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHH---H-HHHHHHHH
Q 004834 376 RME---V-IELPGY---TPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN---L-ERNLAALA 444 (728)
Q Consensus 376 R~~---v-I~~~~~---t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~---L-~~~I~~l~ 444 (728)
||. + +.|..- +.+.+.++++ + .++...++| ....++++++..+++.|++++|.|+ | .+.|..++
T Consensus 299 rfk~~~v~v~f~~~~~d~~e~~~~~~~-~-iaqe~~~~G---~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~ 373 (637)
T PRK13765 299 RIKGYGYEVYMRDTMEDTPENRRKLVR-F-VAQEVKRDG---KIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLV 373 (637)
T ss_pred HhccCeEEEEcccccCCCHHHHHHHHH-H-HHHHhhhcc---CCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHH
Confidence 985 2 555532 3455555543 2 233333332 1247999999999999999999998 5 78999999
Q ss_pred HHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCceeEeeccCCCcccccccccccCCceeechhhhhhhcCCCcc
Q 004834 445 RAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRITSPLVVDEAMLEKVLGPPRF 524 (728)
Q Consensus 445 r~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~It~~~L~~~Lg~~~~ 524 (728)
|.|... .+..... . +...|+..+.. ....++++.+++|++.+++
T Consensus 374 r~a~~~-a~~~~~~--------------~-------------------i~~~~v~~a~~--~~~~i~~~~~~~~l~~~~~ 417 (637)
T PRK13765 374 RVAGDI-ARSEGAE--------------L-------------------TTAEHVLEAKK--IARSIEQQLADRYIERRKD 417 (637)
T ss_pred HHHHHH-HHhhccc--------------e-------------------ecHHHHHHHHH--hhhhhhHHHHHHHhCCccc
Confidence 985543 3331110 0 01112222211 1235888899999999987
Q ss_pred CchHHHhhhcCCceeEeeEEeecC-ceeEEEEEEEecC--C--ceEEEeeccchHHHHHHHHHHHHHHHHhhhccchhcc
Q 004834 525 DDREAAERVAAPGISVGLVWTNFG-GEVQFVEATAMRG--K--GELHLTGQLGDVIKESAQIALTWVRARATDLQLVAED 599 (728)
Q Consensus 525 ~~~~~~~~~~~~G~~~gl~~~~~g-g~~~~iE~~~~~G--~--~~~~~tG~~~~~~kES~~~a~~~~~~~~~~l~~~~~~ 599 (728)
.. ....+...+|+++|++|++.+ |.++.||+.+.+| + |.+.+||+++++||||++++.+|++++. +..
T Consensus 418 ~~-~~~~~g~~vG~v~glav~g~~~G~v~~Ievev~~~~g~~~g~~~ltG~l~~~~kES~~~v~a~l~~~~---g~~--- 490 (637)
T PRK13765 418 YE-LFVTEGGEVGRVNGLAVMGEDSGIVLPIMAEVTPAQSKEEGKVIATGKLKEIAKEAVQNVSAIIKKFT---GKD--- 490 (637)
T ss_pred cc-hhhccccceeEEEEEEEeccCceEEEEEEEEEEecCCCCCCeEEeCCCcHHHHHHHHHHHHHHHHhcc---ccc---
Confidence 66 444556789999999999998 9988888777664 4 8999999999999999999999998532 321
Q ss_pred cCCCCCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCeEEEeeeCCCceeeecCCHHHHHHHHHHcCCCee
Q 004834 600 GMNLLQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRV 679 (728)
Q Consensus 600 ~~~~~~~~di~i~~~~g~~~kdGpsaglaia~allSa~~~~~v~~~~a~tGEi~L~G~V~~Vggi~~ki~~A~~~G~~~v 679 (728)
|++.++||||++++.+|||||||+|+|+||+|++.++|+++++||||||+|+|+|+||||+.+|+.+|++.|+++|
T Consensus 491 ----~~~~~i~I~~~~~~~~kdG~SadLaia~AllSal~~~pv~~~~a~tGELsL~G~V~pVgGv~eki~~A~~~G~k~V 566 (637)
T PRK13765 491 ----ISNYDIHIQFVQTYEGVEGDSASISVATAVISALENIPVDQSVAMTGSLSVRGDVLPVGGVTYKIEAAAEAGIKKV 566 (637)
T ss_pred ----CCCeEEEEEEcCcccCCCCCcchHHHHHHHHHHccCCCCCCCEEEEEEECCCceEEecCCHHHHHHHHHHCCCCEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCccccccchHhhhCCcEEEEeCCHHHHHHHHHcCC
Q 004834 680 ILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGG 719 (728)
Q Consensus 680 iiP~~n~~d~~~ip~~~~~~i~i~~v~~~~e~~~~~~~~~ 719 (728)
|||++|.+|+. +|+++.++++|++|+|++||++++|.+.
T Consensus 567 iIP~~N~~e~~-l~~~v~~~i~I~~V~~l~eal~~al~~~ 605 (637)
T PRK13765 567 IIPKSNEQDVM-IEDEYEDKIEIIPVSTISEVLEHALVGG 605 (637)
T ss_pred EECHHHHhhcc-chhhhcCCCEEEEeCCHHHHHHHHhhCC
Confidence 99999999996 8999999999999999999999998743
No 8
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=100.00 E-value=1e-47 Score=442.08 Aligned_cols=355 Identities=25% Similarity=0.372 Sum_probs=264.0
Q ss_pred CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccC--CCC-----eeecCCCcEEEEecCCC--CCCChhhhCCe
Q 004834 307 CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDH--YLN-----VPFDLSKVIFVATANRA--QPIPPPLLDRM 377 (728)
Q Consensus 307 ~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~--~~~-----~~~d~~~vi~I~TtN~~--~~l~~~Ll~R~ 377 (728)
.++++||||++.+.+.. +..|+++|+..+....... ..+ .++. -++.+|+++|.. ..++|+|++||
T Consensus 217 ngGtL~Ldei~~L~~~~----q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip-~dvrvIa~~~~~~l~~l~~~l~~rf 291 (608)
T TIGR00764 217 HKGVLYIDEIKTMPLEV----QQYLLTALQDKKFPITGQSENSSGAMVRTEPVP-CDFILVASGNLDDLEGMHPALRSRI 291 (608)
T ss_pred CCCEEEEEChHhCCHHH----HHHHHHHHHhCcEEecCccccccccccCCCCCc-cceEEEEECCHHHHhhcCHHHHHHh
Confidence 34699999999998765 8999999976543221110 000 1111 145788999875 68999999999
Q ss_pred e---E-EEcCC---CCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHH----HHHHHHHHHH
Q 004834 378 E---V-IELPG---YTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL----ERNLAALARA 446 (728)
Q Consensus 378 ~---v-I~~~~---~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L----~~~I~~l~r~ 446 (728)
. + +.|+. .+.+.+.++++ ++ .++.+++|.. ..++++++..+++.|++++|.|+. .|.|.++||.
T Consensus 292 ~~y~v~v~~~~~~~~~~e~~~~~~~-~i-~~~~~r~G~l---~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~ 366 (608)
T TIGR00764 292 RGYGYEVYMKDTMPDTPENRDKLVQ-FV-AQEVKKDGRI---PHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRA 366 (608)
T ss_pred cCCeEEEEeeccCCCCHHHHHHHHH-HH-HHHHHHhCCC---CcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHH
Confidence 8 4 44443 35566666644 32 3444555422 379999999999999999999998 8999999998
Q ss_pred HHHHHHHHhhhhcCCCCccccccCCccccccccCCCceeEeeccCCCcccccccccccCCceeechhhhhhhcCCCccCc
Q 004834 447 AAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRITSPLVVDEAMLEKVLGPPRFDD 526 (728)
Q Consensus 447 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~It~~~L~~~Lg~~~~~~ 526 (728)
|.. +++.. +. ..++.+|+..+++... .....--++|++.+....
T Consensus 367 A~~-iA~~~-~~--------------------------------~~I~~ehV~~Ai~~~~--~~~~~i~~~~l~~~~~~~ 410 (608)
T TIGR00764 367 AGD-IAKSS-GK--------------------------------VYVTAEHVLKAKKLAK--TLEKQLADNYIERKKRYK 410 (608)
T ss_pred HHH-HHHhc-CC--------------------------------ceecHHHHHHHHHHHH--HHHHHHHHHhccCcccCe
Confidence 743 33320 00 0011222222221100 011111235888875544
Q ss_pred hHHHhhhcCCceeEeeEEee-cCcee--EEEEEEEecC--CceEEEeeccchHHHHHHHHHHHHHHHHhhhccchhcccC
Q 004834 527 REAAERVAAPGISVGLVWTN-FGGEV--QFVEATAMRG--KGELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGM 601 (728)
Q Consensus 527 ~~~~~~~~~~G~~~gl~~~~-~gg~~--~~iE~~~~~G--~~~~~~tG~~~~~~kES~~~a~~~~~~~~~~l~~~~~~~~ 601 (728)
....+...+|+++|++|++ .+|.+ +.||+....| .|++.+||++|++|+||++++.+|++.+. +.
T Consensus 411 -~~~~~g~~~G~v~glav~g~~~g~~~~i~ve~~~~~g~~~g~~~~~Gl~g~~~kEs~~~~~a~l~~~~---~~------ 480 (608)
T TIGR00764 411 -VIVNEGGEVGRVNGLAVIGEASGIVLPIKAIVAPAESKEEGRIIATGKLGEIAKEAVTNVSALIKKYT---GE------ 480 (608)
T ss_pred -eeeecCCccEEEEEEEEeccCCceEEEEEEEEEecccCCCceEEEecCcHHHHHHHHHHHHHHHHHhh---CC------
Confidence 3334567889999999999 78877 5555554444 36699999999999999999999998433 22
Q ss_pred CCCCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCeEEEeeeCCCceeeecCCHHHHHHHHHHcCCCeeec
Q 004834 602 NLLQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVIL 681 (728)
Q Consensus 602 ~~~~~~di~i~~~~g~~~kdGpsaglaia~allSa~~~~~v~~~~a~tGEi~L~G~V~~Vggi~~ki~~A~~~G~~~vii 681 (728)
.|++.|||||+++++.+|||||||+|+|+||+|++.++|+++++||||||+|+|+|+||||+.+|+.+|++.|+++|||
T Consensus 481 -~~~~~~i~I~l~~~~~~k~G~sadlaia~AilSa~~~~pv~~~~a~tGElsL~G~V~pVgGv~~ki~~A~~~G~k~viI 559 (608)
T TIGR00764 481 -DISNYDIHIQFLQTYEGVEGDSASISVATAVISALEEIPVDQDVAMTGSLSVRGEVLPVGGVTEKIEAAIEAGIKKVII 559 (608)
T ss_pred -CCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHccCCCCCCCEEEEEEECCCeEEEeeCCHHHHHHHHHHCCCCEEEE
Confidence 2789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccccchHhhhCCcEEEEeCCHHHHHHHHHcCC
Q 004834 682 PERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGG 719 (728)
Q Consensus 682 P~~n~~d~~~ip~~~~~~i~i~~v~~~~e~~~~~~~~~ 719 (728)
|.+|.+|+. +|+++..+++|++|+|++||++++|...
T Consensus 560 P~~N~~~~~-l~~~~~~~~~i~~v~~l~e~i~~l~~~~ 596 (608)
T TIGR00764 560 PKSNMIDVI-LEKETEGKIEIIPVETLDEVLEHVLDLD 596 (608)
T ss_pred CHHHHhhhc-cccccCCCEEEEEeCCHHHHHHHHHhcC
Confidence 999999987 6666666799999999999999988644
No 9
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=100.00 E-value=7.1e-47 Score=421.05 Aligned_cols=416 Identities=19% Similarity=0.265 Sum_probs=282.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCcc-ccccCCcchHHHHHhhcCCCCcEEEEecc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRR-TYIGSMPGRLIDGLKRVGVCNPVMLLDEI 316 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~-~yvG~~~g~l~~~~~~a~~~~~VlllDEi 316 (728)
.+.-++|=.||-|||||++=+-++ |...+--+|..+++.+..... +-+|. + + ...++.|||+
T Consensus 214 E~N~Nl~ELgPrgTGKS~~y~eiS-----p~~~liSGG~~T~A~LFyn~~~~~~Gl----V-------g-~~D~VaFDEv 276 (675)
T TIGR02653 214 ENNYNLCELGPRGTGKSHVYKECS-----PNSILMSGGQTTVANLFYNMSTRQIGL----V-------G-MWDVVAFDEV 276 (675)
T ss_pred ccccceEEECCCCCCcceeeeccC-----CceEEEECCccchhHeeEEcCCCceeE----E-------e-eccEEEEeec
Confidence 445589999999999999876443 444444556666666543211 11111 0 0 1359999999
Q ss_pred cccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC---------------CCC--ChhhhCCee-
Q 004834 317 DKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA---------------QPI--PPPLLDRME- 378 (728)
Q Consensus 317 dkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~---------------~~l--~~~Ll~R~~- 378 (728)
..+..+. .|..+.|-..|+.++..+-.. ... .....+|++-.|.+ +.+ +.||+|||+
T Consensus 277 a~i~f~d-~d~v~imK~YM~sG~FsRG~~---~~~-a~as~vfvGNi~~~v~~~~k~~~lf~~lP~~~~~DsAflDRiH~ 351 (675)
T TIGR02653 277 AGIEFKD-KDGVQIMKDYMASGSFARGKE---SIE-GKASIVFVGNINQSVETLVKTSHLFAPFPEAMRIDTAFFDRFHY 351 (675)
T ss_pred cccccCC-HHHHHHHHHHhhcCccccccc---ccc-cceeEEEEcccCCchHHHhhcccccccCChhhcccchHHHHhhc
Confidence 9886532 334666666677654433211 111 12234666655532 233 567888997
Q ss_pred E---EEcCCCCHHHH-----------HHHHHHhhchH-----HHhhcCCCccccc-cCHHHHHHHHHHccc--ccchHHH
Q 004834 379 V---IELPGYTPEEK-----------LRIAMRHLIPR-----VLDQHGLGSEFLQ-IPEAMVKLVIQRYTR--EAGVRNL 436 (728)
Q Consensus 379 v---I~~~~~t~ee~-----------~~Il~~~l~~~-----~~~~~~~~~~~~~-i~d~~l~~l~~~~~~--~~G~R~L 436 (728)
+ .++|..+++-. .++++.. .+. .-+...+. .+++ =|..++...+.++.. ....+.-
T Consensus 352 yiPGWeiPk~~~e~~t~~yGl~~DylsE~l~~l-R~~~~~~~~~~~~~l~-~~~~~RD~~aV~kt~SgllKLl~P~~~~~ 429 (675)
T TIGR02653 352 YIPGWEIPKMRPEYFTNRYGFIVDYLAEYMREM-RKRSFADAIDRFFKLG-NNLNQRDVIAVRKTVSGLLKLLYPDGEYT 429 (675)
T ss_pred cCcCCcCccCCHHHcccCCcchHHHHHHHHHHH-HhhhHHHHHHhhEecC-CCCchhhHHHHHHHHHHHHHHhCCCCCCC
Confidence 2 67887766432 1222111 110 00111111 1111 123344444332221 0011112
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCceeEeeccCCCcccccccccccCCceeechhhhh
Q 004834 437 ERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRITSPLVVDEAMLE 516 (728)
Q Consensus 437 ~~~I~~l~r~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~It~~~L~ 516 (728)
+..++.+|+ -|++.-+....+ .+.-+ ...-.+++ -.+.+.+++-+
T Consensus 430 ~ee~e~~l~-~Ale~RrrVkeQ-------------------l~~i~---------~~ef~~~~------fsy~~~~~~~e 474 (675)
T TIGR02653 430 KDDVRECLT-YAMEGRRRVKEQ-------------------LKKLG---------GFEFFDVN------FSYIDNESLEE 474 (675)
T ss_pred HHHHHHHHH-HHHHHHHHHHHH-------------------HHhcC---------Cceeccce------eeeEEcCCCcE
Confidence 334444442 233222221111 00000 00000111 13556778888
Q ss_pred hhcCCCccCchHHHhh-hcCCceeEeeEEeecCcee-EEEEEEEecCCceEEEee-ccchHHHHHHHHHHHHHHHHhhhc
Q 004834 517 KVLGPPRFDDREAAER-VAAPGISVGLVWTNFGGEV-QFVEATAMRGKGELHLTG-QLGDVIKESAQIALTWVRARATDL 593 (728)
Q Consensus 517 ~~Lg~~~~~~~~~~~~-~~~~G~~~gl~~~~~gg~~-~~iE~~~~~G~~~~~~tG-~~~~~~kES~~~a~~~~~~~~~~l 593 (728)
.+++.|.......+++ ...||+|+|+||++.||.. ++||++.+||+|++.+|| ++|++||||+++|++|+|+++..+
T Consensus 475 ~~v~~pe~~~~~~i~~~p~~pGvv~GLA~t~~Gg~~Ly~IE~~~~~G~Gkl~lTG~~lg~vmKESa~~A~sy~ks~a~~l 554 (675)
T TIGR02653 475 FFVSVPEQGGSKLIPAGPPKPGVVYAVTQNESGKVGLYRFEVQVSAGSGKHSVSGLGSNTTAKESIRVAFDYFKGNLVRI 554 (675)
T ss_pred EEEecCccCCCCccCCCCCCCeEEEEEEEcCCCCeEEEEEEEEEeCCCCceeeccCCchHHHHHHHHHHHHHHHHhHHhc
Confidence 8888888877555544 4578999999999999875 689999999999999999 999999999999999999999998
Q ss_pred cchhcccCCCCCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCeEEEeeeCCCceeeecCCHHHHHHHHHH
Q 004834 594 QLVAEDGMNLLQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHR 673 (728)
Q Consensus 594 ~~~~~~~~~~~~~~di~i~~~~g~~~kdGpsaglaia~allSa~~~~~v~~~~a~tGEi~L~G~V~~Vggi~~ki~~A~~ 673 (728)
+... .|.++|+|||+|+|++||||||||+|+++||+|+++++|+++++||||||||+|+|+||||+++|+++|+|
T Consensus 555 ~~~~-----~~~~~DiHIHvpega~pkdGpSAGia~~~AL~Sal~~rpVr~~lAmTGEITL~G~VlpVGGlkEKl~aA~r 629 (675)
T TIGR02653 555 SASA-----KFSEHDYHLHVVDLHNTGPSTEASLAALIALCSALLKRPVQEQMVILGSMTIGGVINPVQDLAGSLQLAMD 629 (675)
T ss_pred CCCc-----ccCcceEEEECCCCCCCCCCchhHHHHHHHHHHHHhCCCCCCCeEEEEEEecceEEEecCCHHHHHHHHHH
Confidence 8632 38899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeeccccCccccccchHhhhCCcEEEEeCCHHHHHHHHHc
Q 004834 674 YGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFE 717 (728)
Q Consensus 674 ~G~~~viiP~~n~~d~~~ip~~~~~~i~i~~v~~~~e~~~~~~~ 717 (728)
+|+|+||+|.+|.+|+.++|+++++++++++|+++.||+..++.
T Consensus 630 aGaK~VLiP~~N~~Dl~~vP~ev~~kl~i~fy~d~~dal~kAL~ 673 (675)
T TIGR02653 630 SGAKRVLIPMSSARDIPTVPAELFSKFQISFYSDPVDAVYKALG 673 (675)
T ss_pred CCCCEEEccHHHhhhHHhCCHHHHhCCEEEEeCCHHHHHHHhhC
Confidence 99999999999999999999999999999999999999998874
No 10
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-45 Score=421.73 Aligned_cols=391 Identities=25% Similarity=0.364 Sum_probs=318.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHccCChhHHHHHHHhcCCCC----HHHHHHhhhccCHHHHHHH---
Q 004834 13 PDFIALSRQFKATAMELISVLEQKQKTGGRTKVLLETVPIHKLADIFVASFEIS----FEEQLVMLDSVDLKVRLSK--- 85 (728)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~----~~~~~~lLd~~~~~~r~~~--- 85 (728)
.++-.++|.++..++.|+.. .++|.+..|....|+.+|+ ||||||++|++|+++||+.
T Consensus 336 e~ti~ILrGlk~~yE~hH~V---------------~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~~p 400 (786)
T COG0542 336 EDTIAILRGLKERYEAHHGV---------------RITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEIDKP 400 (786)
T ss_pred HHHHHHHHHHHHHHHHccCc---------------eecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhcccCC
Confidence 34566677777777766542 3456666777777777777 9999999999999999984
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004834 86 -ATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDEDDLVALERKMQSAGMPSNIWKHVQKE 164 (728)
Q Consensus 86 -~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~r~~~l~eql~~i~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e 164 (728)
.++.+++++.++++|++...+.++ +++..+..++..+++ ..+.++ +.+
T Consensus 401 ~~l~~~~~~~~~l~~e~~~~~~e~~-----~~~k~~~~~~~~~~~---------~~~~~~-----------------~~~ 449 (786)
T COG0542 401 EELDELERELAQLEIEKEALEREQD-----EKEKKLIDEIIKLKE---------GRIPEL-----------------EKE 449 (786)
T ss_pred cchhHHHHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHhh---------hhhhhH-----------------HHH
Confidence 789999999999999887666544 333333333333332 011111 111
Q ss_pred HHHHHhcCCCCCCCchhHHHHHHHHcCCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhcc---CCCCCCC
Q 004834 165 LRRLKKMQPQQPGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKL---KPDARGP 241 (728)
Q Consensus 165 l~~l~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~---~~~~~~~ 241 (728)
+.. + .....+..+++.|+++|..+.++++...+.++++.|.+.++||+++++.+...+...+. .++.|..
T Consensus 450 ~~~-~------v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPig 522 (786)
T COG0542 450 LEA-E------VDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIG 522 (786)
T ss_pred Hhh-c------cCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCce
Confidence 111 1 33456788899999999999999989999999999999999999999999999987654 2344555
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCc---cchhhhccCccccccCCc-chHHHHHhhcCCCCcEEEEe
Q 004834 242 VLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGV---KDEADIRGHRRTYIGSMP-GRLIDGLKRVGVCNPVMLLD 314 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~---~~~s~l~g~~~~yvG~~~-g~l~~~~~~a~~~~~VlllD 314 (728)
+++|.||+|||||.||+++|..|. ..+++++|+++ |+++.++|.||+||||.+ |.+++++++.|+ +|++||
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~Py--SViLlD 600 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPY--SVILLD 600 (786)
T ss_pred EEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCC--eEEEec
Confidence 899999999999999999999996 78999999987 889999999999999998 789999999886 499999
Q ss_pred cccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC---------------------------
Q 004834 315 EIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ--------------------------- 367 (728)
Q Consensus 315 Eidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~--------------------------- 367 (728)
||+|+||++ ++.|||+||.+ +.+|. .|+.+||+|+++|+|||.+.
T Consensus 601 EIEKAHpdV----~nilLQVlDdG---rLTD~-~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~ 672 (786)
T COG0542 601 EIEKAHPDV----FNLLLQVLDDG---RLTDG-QGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELK 672 (786)
T ss_pred hhhhcCHHH----HHHHHHHhcCC---eeecC-CCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHH
Confidence 999999998 99999999964 34554 59999999999999999863
Q ss_pred -CCChhhhCCee-EEEcCCCCHHHHHHHHHHhhc--hHHHhhcCCCccccccCHHHHHHHHH-HcccccchHHHHHHHHH
Q 004834 368 -PIPPPLLDRME-VIELPGYTPEEKLRIAMRHLI--PRVLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAA 442 (728)
Q Consensus 368 -~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~--~~~~~~~~~~~~~~~i~d~~l~~l~~-~~~~~~G~R~L~~~I~~ 442 (728)
.|+|+|++|++ +|.|.+++.+...+|+..+|. .+.+.++++ .+.+++++.+++++ .|...+|+|+|+|.|++
T Consensus 673 ~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i---~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~ 749 (786)
T COG0542 673 KHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGI---TLELSDEAKDFLAEKGYDPEYGARPLRRAIQQ 749 (786)
T ss_pred hhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCc---eEEECHHHHHHHHHhccCCCcCchHHHHHHHH
Confidence 68999999998 999999999999999999885 344445555 48999999999997 88899999999999998
Q ss_pred HHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCceeEeecc
Q 004834 443 LARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIP 490 (728)
Q Consensus 443 l~r~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~ 490 (728)
-+. ++||+.+|+|...++.+|.|+++.
T Consensus 750 ~i~---------------------~~La~~iL~g~~~~~~~v~v~~~~ 776 (786)
T COG0542 750 EIE---------------------DPLADEILFGKIEDGGTVKVDVDD 776 (786)
T ss_pred HHH---------------------HHHHHHHHhcccCCCcEEEEEecC
Confidence 773 578888999999999989888775
No 11
>PF05362 Lon_C: Lon protease (S16) C-terminal proteolytic domain; InterPro: IPR008269 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature defines the C-terminal proteolytic domain of the archael, bacterial and eukaryotic Lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (Lon protease family, clan SF). In the eukaryotes the majority of the proteins are located in the mitochondrial matrix [, ]. In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response [].; GO: 0004176 ATP-dependent peptidase activity, 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1Z0E_E 1Z0G_E 1Z0T_F 1Z0C_A 1Z0V_A 1Z0B_A 1Z0W_A 2KJP_A 2X36_F 3K1J_B ....
Probab=100.00 E-value=5.8e-46 Score=369.57 Aligned_cols=204 Identities=48% Similarity=0.783 Sum_probs=181.4
Q ss_pred eechhhhhhhcCCCccCchHHHhhhcCCceeEeeEEeecCceeEEEEEEEecCCceEEEeeccchHHHHHHHHHHHHHHH
Q 004834 509 VVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEATAMRGKGELHLTGQLGDVIKESAQIALTWVRA 588 (728)
Q Consensus 509 ~It~~~L~~~Lg~~~~~~~~~~~~~~~~G~~~gl~~~~~gg~~~~iE~~~~~G~~~~~~tG~~~~~~kES~~~a~~~~~~ 588 (728)
.|+.++|++|||+|+|.. +...+.++||+|+||+|++.||.+++||++++||+|++.+||+++++||||++.|++|+++
T Consensus 1 ~i~~~~l~~~lg~~~~~~-~~~~~~~~~G~v~GLa~~~~GG~~l~IE~~~~~G~G~l~~tG~lg~v~kES~~~A~~~~k~ 79 (204)
T PF05362_consen 1 TITKEDLEEYLGPPRFDP-EKISKEPKPGVVNGLAVTSMGGAVLPIEAQVIPGKGKLIITGNLGDVMKESAKIAFSYLKA 79 (204)
T ss_dssp EE-TTTCHHHH-S-SS---SSSSSSEETTEEEEEEEETTEEEEEEEEEEEEESSSEEEEESSBHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHcCCCccCc-cccccCCCCeEEEEEEEecCCCeEEEEEEeeccCcceeEeecccchhHHHHHHHHHHHHHh
Confidence 378999999999999988 6666678899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccchhcccCCCCCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCeEEEeeeCCCceeeecCCHHHHH
Q 004834 589 RATDLQLVAEDGMNLLQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKI 668 (728)
Q Consensus 589 ~~~~l~~~~~~~~~~~~~~di~i~~~~g~~~kdGpsaglaia~allSa~~~~~v~~~~a~tGEi~L~G~V~~Vggi~~ki 668 (728)
++..++.. ...|.++|+|||+|.+++++||||||+|+++|++|+++++|+++++||||||+++|+|+||||+.+|+
T Consensus 80 ~~~~~~~~----~~~~~~~dihi~~~~~~~~~dGpSAgla~~~al~S~~~~~~v~~~ia~TG~i~~~G~V~~Vggl~eKl 155 (204)
T PF05362_consen 80 NLKRIGID----PSNFDNYDIHIHVPDGAIPKDGPSAGLAIALALYSALTGKPVRSDIAMTGEITLGGEVLPVGGLKEKL 155 (204)
T ss_dssp HHHCCSST----CCHHGCEEEEEEESSTTTTCCGGCCHHHHHHHHHHHHHT-EBETTEEE-BEE-TTSBEE--STHHHHH
T ss_pred hhcccccc----cccccceeEEEecccccccCCCchhHHHHHHHHHHHHcCCCCCCCeeEEEEecCCCceecccchhHHH
Confidence 99887752 23467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeeeccccCccccccchHhhhCCcEEEEeCCHHHHHHHHHc
Q 004834 669 LAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFE 717 (728)
Q Consensus 669 ~~A~~~G~~~viiP~~n~~d~~~ip~~~~~~i~i~~v~~~~e~~~~~~~ 717 (728)
.+|+|+|+++|++|.+|+.|+.++|+++++++++++|+|++||++.+|.
T Consensus 156 ~~A~~~G~k~vliP~~n~~~l~~vp~~i~~~i~i~~v~~i~ea~~~al~ 204 (204)
T PF05362_consen 156 QAAKRAGAKRVLIPASNRKDLKEVPKEIKEKIEIIFVSTIDEALEIALE 204 (204)
T ss_dssp HHHHHTT-SEEEEEGGGGGGCCTS-HHHHTSSEEEEESBHHHHHHHHBS
T ss_pred HHHHHcCCeEEEEcHHHHHHHHHhHHHHhCCcEEEEECCHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999874
No 12
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=4.2e-36 Score=357.67 Aligned_cols=366 Identities=21% Similarity=0.291 Sum_probs=271.2
Q ss_pred HHHHHHhhhccCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHh-hhchH-------HHHHHHHHHHHHHHHHhCC
Q 004834 67 FEEQLVMLDSVDLKVRLSK-----ATELVDRHLQSIRVAEKITQKVEG-QLSKS-------QKEFLLRQQMRAIKEELGD 133 (728)
Q Consensus 67 ~~~~~~lLd~~~~~~r~~~-----~~~~l~~~~~~~~~e~~~~~~~~~-~~~~~-------~r~~~l~eql~~i~~el~~ 133 (728)
||||+||||++|+++|++. .++.+++++..++.+..-..+... ..... .....++++++.++..|..
T Consensus 396 PDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (852)
T TIGR03345 396 PDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQ 475 (852)
T ss_pred ccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999984 678888888888777764322110 00111 1223455566666666643
Q ss_pred CCCCHHHHHHHHHHHHHc-C-------CCHHHHHHHHHHHHHHHhcCCCC---CCCchhHHHHHHHHcCCCCccchhHHh
Q 004834 134 NDDDEDDLVALERKMQSA-G-------MPSNIWKHVQKELRRLKKMQPQQ---PGYTSSRVYLELIADLPWEKASEEIDL 202 (728)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~-~-------~~~~~~~~~~~el~~l~~~~~~~---~~~~~~~~~~~~~~~iP~~~~~~~~~~ 202 (728)
.....+++..++...... . .....+..+++++..++...+.. ....++..+++.|++||+.+...++..
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~ 555 (852)
T TIGR03345 476 EKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIE 555 (852)
T ss_pred HHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchhhchhHHH
Confidence 322111222222211110 0 00112233344444444332222 233467889999999999999998888
Q ss_pred cHHHHHHhhhccccchHHHHHHHHHHHHhhcc---CCCCCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCc
Q 004834 203 DLKAAKERLDSDHYGLVRVKQRIIEYLAVRKL---KPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGV 276 (728)
Q Consensus 203 ~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~---~~~~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~ 276 (728)
.+.++++.|.+.++||+.+++.+.+.+..... .+..+..++||+||||||||++|+++|+.+ ...+++++|+++
T Consensus 556 ~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~ 635 (852)
T TIGR03345 556 AVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEF 635 (852)
T ss_pred HHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHh
Confidence 99999999999999999999999999876533 233334479999999999999999999999 357899998875
Q ss_pred ---cchhhhccCccccccCCc-chHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeee
Q 004834 277 ---KDEADIRGHRRTYIGSMP-GRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPF 352 (728)
Q Consensus 277 ---~~~s~l~g~~~~yvG~~~-g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~ 352 (728)
++.+.+.|.+++|+|+.. |.+++++++.++ +||+||||++++++. ++.|+++||.+. +.| ..|+.+
T Consensus 636 ~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~--svvllDEieka~~~v----~~~Llq~ld~g~---l~d-~~Gr~v 705 (852)
T TIGR03345 636 QEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPY--SVVLLDEVEKAHPDV----LELFYQVFDKGV---MED-GEGREI 705 (852)
T ss_pred hhhhhhccccCCCCCcccccccchHHHHHHhCCC--cEEEEechhhcCHHH----HHHHHHHhhcce---eec-CCCcEE
Confidence 667889999999999976 678888888664 599999999999987 999999999643 444 458999
Q ss_pred cCCCcEEEEecCCCC-----------------------------CCChhhhCCeeEEEcCCCCHHHHHHHHHHhhch--H
Q 004834 353 DLSKVIFVATANRAQ-----------------------------PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIP--R 401 (728)
Q Consensus 353 d~~~vi~I~TtN~~~-----------------------------~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~--~ 401 (728)
||++++||+|||.+. .|+|+|++|+++|.|.+++.++..+|+...+.. +
T Consensus 706 d~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~ 785 (852)
T TIGR03345 706 DFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIAR 785 (852)
T ss_pred eccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999732 489999999999999999999999999998743 2
Q ss_pred HHh-hcCCCccccccCHHHHHHHHH-HcccccchHHHHHHHHHHHH
Q 004834 402 VLD-QHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAALAR 445 (728)
Q Consensus 402 ~~~-~~~~~~~~~~i~d~~l~~l~~-~~~~~~G~R~L~~~I~~l~r 445 (728)
.+. .+++ .+.++++++++|++ .|...+|+|.|+|.|++.+.
T Consensus 786 rl~~~~gi---~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~ 828 (852)
T TIGR03345 786 RLKENHGA---ELVYSEALVEHIVARCTEVESGARNIDAILNQTLL 828 (852)
T ss_pred HHHHhcCc---eEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Confidence 222 2243 48899999999998 66679999999999999664
No 13
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=5.1e-35 Score=350.11 Aligned_cols=408 Identities=20% Similarity=0.295 Sum_probs=300.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHccCChhHHHHHHHhcCC--CCHHHHHHhhhccCHHHHHHH-
Q 004834 9 VEQDPDFIALSRQFKATAMELISVLEQKQKTGGRTKVLLETVPIHKLADIFVASFE--ISFEEQLVMLDSVDLKVRLSK- 85 (728)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~--~~~~~~~~lLd~~~~~~r~~~- 85 (728)
..+..+..++++.++..+++++... .+.+.+.. ++++...+++ .-||||+|+||++|+++|+..
T Consensus 340 ep~~~e~~aILr~l~~~~e~~~~v~----i~deal~~---------i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~~ 406 (821)
T CHL00095 340 EPSVEETIEILFGLRSRYEKHHNLS----ISDKALEA---------AAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINS 406 (821)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCC----CCHHHHHH---------HHHHhhccCccccCchHHHHHHHHHHHHHHhhcc
Confidence 3445677889999999888877532 34444432 2333333332 239999999999999999974
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Q 004834 86 ----ATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDEDDLVALERKMQSAGMPSNIWKHV 161 (728)
Q Consensus 86 ----~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~r~~~l~eql~~i~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 161 (728)
.++.+++++..++.+++...+.. ...+...++.+...+++++ ..+......
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~----------- 461 (821)
T CHL00095 407 RLPPAARELDKELREILKDKDEAIREQ----DFETAKQLRDREMEVRAQI----------AAIIQSKKT----------- 461 (821)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhCc----chHHHHHHHHHHHHHHHHH----------HHHHHHHHh-----------
Confidence 67788888888877765332111 1111122222222222211 111111100
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhcc---CCCC
Q 004834 162 QKELRRLKKMQPQQPGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKL---KPDA 238 (728)
Q Consensus 162 ~~el~~l~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~---~~~~ 238 (728)
+-. ...........++..+++.|++||......++...+..+++.|.+.++||+.+++.+...+..... .+..
T Consensus 462 --~~~--~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~ 537 (821)
T CHL00095 462 --EEE--KRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNR 537 (821)
T ss_pred --hhc--ccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCC
Confidence 000 001112233456778899999999999999888889999999999999999999999998876543 2223
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCc---cchhhhccCccccccCCc-chHHHHHhhcCCCCcEE
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGV---KDEADIRGHRRTYIGSMP-GRLIDGLKRVGVCNPVM 311 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~---~~~s~l~g~~~~yvG~~~-g~l~~~~~~a~~~~~Vl 311 (728)
+..+++|+||||||||++|+++|+.+. .++++++++.+ +..+.+.|.+++|+|+.. +.+.+.++..++ .|+
T Consensus 538 p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~--~Vv 615 (821)
T CHL00095 538 PIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPY--TVV 615 (821)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCC--eEE
Confidence 334789999999999999999999983 57899998876 567888999999999987 578888888765 599
Q ss_pred EEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC------------------------
Q 004834 312 LLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ------------------------ 367 (728)
Q Consensus 312 llDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~------------------------ 367 (728)
||||+|+++++. ++.|+++||.+ .+.|. .|+.+|+++++||+|||.+.
T Consensus 616 llDeieka~~~v----~~~Llq~le~g---~~~d~-~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~ 687 (821)
T CHL00095 616 LFDEIEKAHPDI----FNLLLQILDDG---RLTDS-KGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQY 687 (821)
T ss_pred EECChhhCCHHH----HHHHHHHhccC---ceecC-CCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccH
Confidence 999999999988 99999999964 34454 48899999999999999642
Q ss_pred -------------CCChhhhCCee-EEEcCCCCHHHHHHHHHHhhch--HHHhhcCCCccccccCHHHHHHHHH-Hcccc
Q 004834 368 -------------PIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIP--RVLDQHGLGSEFLQIPEAMVKLVIQ-RYTRE 430 (728)
Q Consensus 368 -------------~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~--~~~~~~~~~~~~~~i~d~~l~~l~~-~~~~~ 430 (728)
.|+|+|++|++ +|.|.+++.++..+|+...+.. +.+..+++ .+.++++++++|++ .|...
T Consensus 688 ~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i---~l~~~~~~~~~La~~~~~~~ 764 (821)
T CHL00095 688 KRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGI---QLEVTERIKTLLIEEGYNPL 764 (821)
T ss_pred HHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCc---EEEECHHHHHHHHHhcCCCC
Confidence 26689999995 9999999999999999988753 23444444 48999999999998 58999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCceeEeeccCC
Q 004834 431 AGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMG 492 (728)
Q Consensus 431 ~G~R~L~~~I~~l~r~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~ 492 (728)
+|+|+|+|.|++.+. .|+++.++++....|.+|.|++++.+
T Consensus 765 ~GAR~l~r~i~~~i~---------------------~~l~~~~l~~~~~~g~~v~~~~~~~~ 805 (821)
T CHL00095 765 YGARPLRRAIMRLLE---------------------DPLAEEVLSFKIKPGDIIIVDVNDEK 805 (821)
T ss_pred CChhhHHHHHHHHHH---------------------HHHHHHHHhCccCCCCEEEEEEeCCC
Confidence 999999999999884 45667778888999999999886554
No 14
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=2.4e-34 Score=343.74 Aligned_cols=389 Identities=20% Similarity=0.344 Sum_probs=295.3
Q ss_pred HHHHHHhhhccCHHHHHHH-----HHHHHHHHHHHHHHHHHHH------------HHHHhhhchHHHHHH-HHHHHHHHH
Q 004834 67 FEEQLVMLDSVDLKVRLSK-----ATELVDRHLQSIRVAEKIT------------QKVEGQLSKSQKEFL-LRQQMRAIK 128 (728)
Q Consensus 67 ~~~~~~lLd~~~~~~r~~~-----~~~~l~~~~~~~~~e~~~~------------~~~~~~~~~~~r~~~-l~eql~~i~ 128 (728)
||||++++|++|+..|++. .++.+++.+..++.+.+.. ++++.++++.+++++ +++|++.++
T Consensus 387 pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k 466 (857)
T PRK10865 387 PDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEK 466 (857)
T ss_pred ChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988863 4555555555555554422 233445566677766 888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCC----------HHHHHHHHHHHHHHHhcC----C---CCCCCchhHHHHHHHHcC
Q 004834 129 EELGDNDDDEDDLVALERKMQSAGMP----------SNIWKHVQKELRRLKKMQ----P---QQPGYTSSRVYLELIADL 191 (728)
Q Consensus 129 ~el~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~~~~el~~l~~~~----~---~~~~~~~~~~~~~~~~~i 191 (728)
+++++..+..+++.+++.+++++.-. ...+..+.+++..++... + .......+..+++.|++|
T Consensus 467 ~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgi 546 (857)
T PRK10865 467 ASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTGI 546 (857)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHHHHCC
Confidence 88876544445555555555443211 112222333343332221 1 112334577899999999
Q ss_pred CCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhcc---CCCCCCCEEEEEcCCCCChhHHHHHHHHHh---C
Q 004834 192 PWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKL---KPDARGPVLCFVGPPGVGKTSLASSIASAL---G 265 (728)
Q Consensus 192 P~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~---~~~~~~~~lLL~GPpGtGKT~LakalA~~l---~ 265 (728)
|..+...++...+..+++.|.+.++||+.+++.+...+..... .+..+..+++|+||||||||++|++||+.+ +
T Consensus 547 p~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~ 626 (857)
T PRK10865 547 PVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSD 626 (857)
T ss_pred CchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCC
Confidence 9999999988999999999999999999999999998876542 222333479999999999999999999988 3
Q ss_pred CCeEEEecCCc---cchhhhccCccccccCCc-chHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCccccc
Q 004834 266 RKFIRISLGGV---KDEADIRGHRRTYIGSMP-GRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNK 341 (728)
Q Consensus 266 ~~~~~i~~~~~---~~~s~l~g~~~~yvG~~~-g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~ 341 (728)
.++++++|+.+ +..+.+.|.+++|+|+.. |.+.+.++..++ .|+||||+++++++. ++.|+++|+.+.
T Consensus 627 ~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~--~vLllDEieka~~~v----~~~Ll~ile~g~-- 698 (857)
T PRK10865 627 DAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPY--SVILLDEVEKAHPDV----FNILLQVLDDGR-- 698 (857)
T ss_pred CcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCC--CeEEEeehhhCCHHH----HHHHHHHHhhCc--
Confidence 56889998875 346678999999999876 457777776553 599999999999887 999999998643
Q ss_pred ccccCCCCeeecCCCcEEEEecCCC-------------------------CCCChhhhCCee-EEEcCCCCHHHHHHHHH
Q 004834 342 TFNDHYLNVPFDLSKVIFVATANRA-------------------------QPIPPPLLDRME-VIELPGYTPEEKLRIAM 395 (728)
Q Consensus 342 ~~~d~~~~~~~d~~~vi~I~TtN~~-------------------------~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~ 395 (728)
+.+. .|+.+|+++++||+|||.+ ..|.|+|++|++ ++.|.+++.++..+|++
T Consensus 699 -l~d~-~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~ 776 (857)
T PRK10865 699 -LTDG-QGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQ 776 (857)
T ss_pred -eecC-CceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHH
Confidence 4443 4789999999999999984 257899999995 89999999999999999
Q ss_pred Hhhch--HHHhhcCCCccccccCHHHHHHHHH-HcccccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCc
Q 004834 396 RHLIP--RVLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSP 472 (728)
Q Consensus 396 ~~l~~--~~~~~~~~~~~~~~i~d~~l~~l~~-~~~~~~G~R~L~~~I~~l~r~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (728)
.++.. ..+++.++ .+.++++++++|++ .|+.++|+|+|+|.|++.|. +|+|..
T Consensus 777 ~~L~~l~~rl~~~gi---~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~---------------------~~la~~ 832 (857)
T PRK10865 777 IQLQRLYKRLEERGY---EIHISDEALKLLSENGYDPVYGARPLKRAIQQQIE---------------------NPLAQQ 832 (857)
T ss_pred HHHHHHHHHHHhCCC---cCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHH---------------------HHHHHH
Confidence 98854 22344454 37899999999998 88999999999999999984 467777
Q ss_pred cccccccCCCceeEeec
Q 004834 473 LLDNRLADGAEVEMEVI 489 (728)
Q Consensus 473 ~l~~~~~~~~~v~~~~~ 489 (728)
+++|...+|++|.|+++
T Consensus 833 iL~g~~~~~~~~~~~~~ 849 (857)
T PRK10865 833 ILSGELVPGKVIRLEVN 849 (857)
T ss_pred HHcCcCCCCCEEEEEEE
Confidence 88999999999988875
No 15
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=1.4e-33 Score=338.62 Aligned_cols=388 Identities=19% Similarity=0.330 Sum_probs=287.2
Q ss_pred HHHHHHhhhccCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH-------HHHHHHHHHHHHhCCC
Q 004834 67 FEEQLVMLDSVDLKVRLSK-----ATELVDRHLQSIRVAEKITQKVEGQLSKSQKEF-------LLRQQMRAIKEELGDN 134 (728)
Q Consensus 67 ~~~~~~lLd~~~~~~r~~~-----~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~r~~-------~l~eql~~i~~el~~~ 134 (728)
||||+||||++|+++|++. .++.+++++..++.+.+...+..+. ....|.. .+++++..++..|...
T Consensus 382 PdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (852)
T TIGR03346 382 PDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDE-ASKERLEDLEKELAELEEEYADLEEQWKAE 460 (852)
T ss_pred chHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999974 6788888888888887744332211 1122333 3444444444444332
Q ss_pred CCCHHHHHHHHHHHHHcC-----------------CCHHHHHHHHHHHHHHHhc------CC---CCCCCchhHHHHHHH
Q 004834 135 DDDEDDLVALERKMQSAG-----------------MPSNIWKHVQKELRRLKKM------QP---QQPGYTSSRVYLELI 188 (728)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~-----------------~~~~~~~~~~~el~~l~~~------~~---~~~~~~~~~~~~~~~ 188 (728)
....+.+..++..+.... +....+..+.+++..++.. .+ .......+..+++.|
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~ 540 (852)
T TIGR03346 461 KAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRW 540 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHh
Confidence 222222222332222110 0000111222233222211 01 112345678889999
Q ss_pred HcCCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhcc---CCCCCCCEEEEEcCCCCChhHHHHHHHHHh-
Q 004834 189 ADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKL---KPDARGPVLCFVGPPGVGKTSLASSIASAL- 264 (728)
Q Consensus 189 ~~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~---~~~~~~~~lLL~GPpGtGKT~LakalA~~l- 264 (728)
+++|......++...+..++..|.+.++||+.+++.+...+..... .+..+..+++|+||||||||++|++||+.+
T Consensus 541 tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~ 620 (852)
T TIGR03346 541 TGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF 620 (852)
T ss_pred cCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 9999999999988899999999999999999999999998876543 233344579999999999999999999998
Q ss_pred --CCCeEEEecCCc---cchhhhccCccccccCCc-chHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcc
Q 004834 265 --GRKFIRISLGGV---KDEADIRGHRRTYIGSMP-GRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPE 338 (728)
Q Consensus 265 --~~~~~~i~~~~~---~~~s~l~g~~~~yvG~~~-g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~ 338 (728)
+.++++++|+.+ +..+.+.|.+++|+|+.. |.+++.++..++ .|+|||||++++++. ++.|+++|+.+
T Consensus 621 ~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~--~vlllDeieka~~~v----~~~Ll~~l~~g 694 (852)
T TIGR03346 621 DDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPY--SVVLFDEVEKAHPDV----FNVLLQVLDDG 694 (852)
T ss_pred CCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCC--cEEEEeccccCCHHH----HHHHHHHHhcC
Confidence 357899999865 456788999999999976 678888887664 599999999999988 99999999975
Q ss_pred cccccccCCCCeeecCCCcEEEEecCCCC-------------------------CCChhhhCCee-EEEcCCCCHHHHHH
Q 004834 339 QNKTFNDHYLNVPFDLSKVIFVATANRAQ-------------------------PIPPPLLDRME-VIELPGYTPEEKLR 392 (728)
Q Consensus 339 ~~~~~~d~~~~~~~d~~~vi~I~TtN~~~-------------------------~l~~~Ll~R~~-vI~~~~~t~ee~~~ 392 (728)
+ +.+. .|+.+|++|++||+|||.+. .|.|+|++|++ ++.|.+++.++..+
T Consensus 695 ~---l~d~-~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~ 770 (852)
T TIGR03346 695 R---LTDG-QGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIAR 770 (852)
T ss_pred c---eecC-CCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHH
Confidence 3 4554 48999999999999999842 37899999996 89999999999999
Q ss_pred HHHHhhc--hHHHhhcCCCccccccCHHHHHHHHH-HcccccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcccccc
Q 004834 393 IAMRHLI--PRVLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRL 469 (728)
Q Consensus 393 Il~~~l~--~~~~~~~~~~~~~~~i~d~~l~~l~~-~~~~~~G~R~L~~~I~~l~r~a~~~~~~~~~~~~~~~~~~~~~~ 469 (728)
|+...+. .+.+...++ .+.++++++++|++ .|...+|+|+|++.|++.+. .|+
T Consensus 771 I~~l~L~~l~~~l~~~~~---~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~---------------------~~l 826 (852)
T TIGR03346 771 IVEIQLGRLRKRLAERKI---TLELSDAALDFLAEAGYDPVYGARPLKRAIQREIE---------------------NPL 826 (852)
T ss_pred HHHHHHHHHHHHHHHCCC---eecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHH---------------------HHH
Confidence 9998874 233445554 37899999999998 58889999999999998883 467
Q ss_pred CCccccccccCCCceeEeec
Q 004834 470 GSPLLDNRLADGAEVEMEVI 489 (728)
Q Consensus 470 ~~~~l~~~~~~~~~v~~~~~ 489 (728)
|+.+++|....|.++.|+++
T Consensus 827 ~~~~l~~~~~~~~~~~~~~~ 846 (852)
T TIGR03346 827 AKKILAGEVADGDTIVVDVE 846 (852)
T ss_pred HHHHHhCCCCCCCEEEEEee
Confidence 77788899999998888764
No 16
>PRK11823 DNA repair protein RadA; Provisional
Probab=100.00 E-value=3e-33 Score=312.24 Aligned_cols=187 Identities=24% Similarity=0.339 Sum_probs=164.6
Q ss_pred ceeechhhhhhhcCCCccCchHHHhhhcCCceeEeeEEeecCceeEEEEEEEec---CCceEEEeeccchHHHHHHHHHH
Q 004834 507 PLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEATAMR---GKGELHLTGQLGDVIKESAQIAL 583 (728)
Q Consensus 507 ~~~It~~~L~~~Lg~~~~~~~~~~~~~~~~G~~~gl~~~~~gg~~~~iE~~~~~---G~~~~~~tG~~~~~~kES~~~a~ 583 (728)
.|.||.++|+.+.+|+.++..++ ....+|.+++.++.|+.+.++.||+.+++ |.|+++++|..+.
T Consensus 255 ~f~it~~Gi~~v~~ps~~~~~~~--~~~~~g~~~~~~~~G~~~~~veVea~v~~~~~g~p~~~~vGl~~~---------- 322 (446)
T PRK11823 255 VFEMTEQGLREVSNPSELFLSER--DENVPGSAVTVTMEGTRPLLVEIQALVSPTSFGNPRRTAVGLDSN---------- 322 (446)
T ss_pred EEEEcCCCceECCCHHHHHhcCC--CCCCCceEEEEEEEcccceEEEEEEeecCCcCCCCceEEecCCHH----------
Confidence 58999999999999998888322 34578999999999999999999999988 9999999998554
Q ss_pred HHHHHHhhhccchhcccCCC-CCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCeEEEeeeCCCceeeecC
Q 004834 584 TWVRARATDLQLVAEDGMNL-LQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVG 662 (728)
Q Consensus 584 ~~~~~~~~~l~~~~~~~~~~-~~~~di~i~~~~g~~~kdGpsaglaia~allSa~~~~~v~~~~a~tGEi~L~G~V~~Vg 662 (728)
|+..+.+.++++.++ |+++|||||+. |+++|+||++|||||+||+|+..++|++.+++|+|||+|+|+|+||+
T Consensus 323 -----Rv~~~~Avl~~~~g~~~~~~~i~vnla-~~~~k~g~~~DLaIa~ailsa~~~~~~~~~~~~~GEl~L~G~vr~v~ 396 (446)
T PRK11823 323 -----RLAMLLAVLEKRLGLPLGDQDVYVNVV-GGLKITEPAADLAVALAIASSLRDRPLPPDTVVFGEVGLTGEIRPVP 396 (446)
T ss_pred -----HHHHHHHHHHHHcCCCCCCccEEEEcc-CCcccCCccccHHHHHHHHHhccCCCCCCCeEEEEecCCCeeEeccC
Confidence 333334444455566 99999999997 99999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCCeeeccccCccccccchHhhhCCcEEEEeCCHHHHHHHHHc
Q 004834 663 GVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFE 717 (728)
Q Consensus 663 gi~~ki~~A~~~G~~~viiP~~n~~d~~~ip~~~~~~i~i~~v~~~~e~~~~~~~ 717 (728)
|+.+++.+|++.|++++|+|.+|..+. .+ .+++|++|+|+.|+++++|.
T Consensus 397 g~~~~~~~a~~~g~~~~ivP~~n~~e~-~~-----~~i~v~~v~~l~e~~~~l~~ 445 (446)
T PRK11823 397 RIERRLKEAAKLGFKRAIVPKGNLPKK-PP-----KGIEVIGVKTLAEALELLFG 445 (446)
T ss_pred CHHHHHHHHHHCCCCEEEeCCcccccc-cc-----CCCEEEEeCCHHHHHHHHhh
Confidence 999999999999999999999998654 33 38999999999999998875
No 17
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-33 Score=292.84 Aligned_cols=185 Identities=26% Similarity=0.379 Sum_probs=168.2
Q ss_pred ceeechhhhhhhcCCCccCchHHHhhhcCCceeEeeEEeecCceeEEEEEEEec---CCceEEEeeccchHHHHHHHHHH
Q 004834 507 PLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEATAMR---GKGELHLTGQLGDVIKESAQIAL 583 (728)
Q Consensus 507 ~~~It~~~L~~~Lg~~~~~~~~~~~~~~~~G~~~gl~~~~~gg~~~~iE~~~~~---G~~~~~~tG~~~~~~kES~~~a~ 583 (728)
.|.|+.++|.++.+|+.+|..++ ....+|.+...+|.|...-+++|++.+.| |+|++..+|
T Consensus 267 vFeM~~~GL~eV~npS~lFL~er--~~~~~GS~v~~~~EGtRpllvEvQALv~~s~~~nPrR~~~G-------------- 330 (456)
T COG1066 267 VFEMTENGLREVSNPSALFLSER--GEQTPGSAVVVVMEGTRPLLVEIQALVSPSSFGNPRRVAVG-------------- 330 (456)
T ss_pred EEEEecCCeeEecCcHHhHhhcC--CCCCCCcEEEEEEecccceEEEeeeccccccCCCCceEEec--------------
Confidence 69999999999999999998443 34578988887787777777777776655 889999999
Q ss_pred HHHHHHhhhccchhcccCCC-CCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCeEEEeeeCCCceeeecC
Q 004834 584 TWVRARATDLQLVAEDGMNL-LQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVG 662 (728)
Q Consensus 584 ~~~~~~~~~l~~~~~~~~~~-~~~~di~i~~~~g~~~kdGpsaglaia~allSa~~~~~v~~~~a~tGEi~L~G~V~~Vg 662 (728)
|..||+.++.++++++.++ +.++|+|+|+ .|+++.+.|++|||+++|++|++.++|+|++.+++|||+|+|+||||.
T Consensus 331 -~D~nRl~mllAVLek~~gl~l~~~Dvyvnv-aGG~ki~EPAaDLAva~Al~SS~~~~~lp~~~v~~GEvgL~GeIR~V~ 408 (456)
T COG1066 331 -LDQNRLAMLLAVLEKRLGLPLGDQDVYVNV-AGGVKVTEPAADLAVALALVSSFRNRPLPQDTVVFGEVGLSGEIRPVP 408 (456)
T ss_pred -cChhHHHHHHHHHHHhcCCcccCccEEEEc-cCCEecCCchHHHHHHHHHHHHhcCCCCCCCeEEEEeeccCceeeecC
Confidence 5999999999999999999 9999999999 899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCCeeeccccCccccccchHhhhCCcEEEEeCCHHHHHHHHHc
Q 004834 663 GVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFE 717 (728)
Q Consensus 663 gi~~ki~~A~~~G~~~viiP~~n~~d~~~ip~~~~~~i~i~~v~~~~e~~~~~~~ 717 (728)
.+.+++.+|.+.||+++|+|..|.. .| .++++++|+++.|++++++.
T Consensus 409 ~~~~RlkEA~klGFk~aivP~~~~~----~~----~~~~~~~v~~l~~a~~~~~~ 455 (456)
T COG1066 409 RGERRLKEAAKLGFKRAIVPKGNIP----LP----EGIKVIGVSTLAEALEVVFD 455 (456)
T ss_pred cHHHHHHHHHHcCCCEEEccCCcCC----CC----CCceEEEechHHHHHHHHhc
Confidence 9999999999999999999999975 23 49999999999999998764
No 18
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=8.3e-32 Score=319.13 Aligned_cols=309 Identities=22% Similarity=0.361 Sum_probs=254.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcCC----CCCCCchhHHHHHHHHcCCCCccchhHHhcHHHHHHhhhccccchHH
Q 004834 145 ERKMQSAGMPSNIWKHVQKELRRLKKMQP----QQPGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVR 220 (728)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~~el~~l~~~~~----~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~ 220 (728)
.+++....+|+++++.+++...+..-... ......++.+++++|+++||...+.++...+..++..|.+.++||++
T Consensus 382 ~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ 461 (731)
T TIGR02639 382 ARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDE 461 (731)
T ss_pred hcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHH
Confidence 45566677899999999876665442211 11233457889999999999998888788999999999999999999
Q ss_pred HHHHHHHHHHhhccC---CCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc---cchhhhccCccccccCCc
Q 004834 221 VKQRIIEYLAVRKLK---PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV---KDEADIRGHRRTYIGSMP 294 (728)
Q Consensus 221 vk~~i~~~l~~~~~~---~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~---~~~s~l~g~~~~yvG~~~ 294 (728)
+++.+...+...... +..+..++||+||||||||++|+++|+.++.++++++|+++ +..+.+.|.+++|+|+..
T Consensus 462 ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~ 541 (731)
T TIGR02639 462 AIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQ 541 (731)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccch
Confidence 999999988765432 22344479999999999999999999999999999999876 557889999999999877
Q ss_pred -chHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC------
Q 004834 295 -GRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ------ 367 (728)
Q Consensus 295 -g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~------ 367 (728)
|.++++++..++ +|+||||||+++++. ++.|+++||.+ .+.|. .|+.+|+++++||+|||.+.
T Consensus 542 ~~~l~~~~~~~p~--~VvllDEieka~~~~----~~~Ll~~ld~g---~~~d~-~g~~vd~~~~iii~Tsn~g~~~~~~~ 611 (731)
T TIGR02639 542 GGLLTEAVRKHPH--CVLLLDEIEKAHPDI----YNILLQVMDYA---TLTDN-NGRKADFRNVILIMTSNAGASEMSKP 611 (731)
T ss_pred hhHHHHHHHhCCC--eEEEEechhhcCHHH----HHHHHHhhccC---eeecC-CCcccCCCCCEEEECCCcchhhhhhc
Confidence 468888887664 699999999999987 99999999964 35555 48899999999999999852
Q ss_pred -------------------CCChhhhCCee-EEEcCCCCHHHHHHHHHHhhch--HHHhhcCCCccccccCHHHHHHHHH
Q 004834 368 -------------------PIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIP--RVLDQHGLGSEFLQIPEAMVKLVIQ 425 (728)
Q Consensus 368 -------------------~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~--~~~~~~~~~~~~~~i~d~~l~~l~~ 425 (728)
.|+|+|++||+ +|.|.+++.++..+|++..+.. +.+...++ .+.++++++++|++
T Consensus 612 ~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~---~l~i~~~a~~~La~ 688 (731)
T TIGR02639 612 PIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNI---KLELTDDAKKYLAE 688 (731)
T ss_pred cCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCC---eEEeCHHHHHHHHH
Confidence 37899999997 8999999999999999998753 33444444 48999999999998
Q ss_pred -HcccccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCceeEe
Q 004834 426 -RYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEME 487 (728)
Q Consensus 426 -~~~~~~G~R~L~~~I~~l~r~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~ 487 (728)
.|..++|+|+|+|.|++.+. .|||..+++|....|+++.|+
T Consensus 689 ~~~~~~~GaR~l~r~i~~~~~---------------------~~l~~~~l~~~~~~~~~~~~~ 730 (731)
T TIGR02639 689 KGYDEEFGARPLARVIQEEIK---------------------KPLSDEILFGKLKKGGSVKVD 730 (731)
T ss_pred hCCCcccCchHHHHHHHHHhH---------------------HHHHHHHHhCcCCCCCEEEEe
Confidence 68999999999999999884 466777788888888877654
No 19
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-31 Score=311.03 Aligned_cols=312 Identities=22% Similarity=0.358 Sum_probs=258.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcCCC----CCCCchhHHHHHHHHcCCCCccchhHHhcHHHHHHhhhccccchHH
Q 004834 145 ERKMQSAGMPSNIWKHVQKELRRLKKMQPQ----QPGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVR 220 (728)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~~el~~l~~~~~~----~~~~~~~~~~~~~~~~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~ 220 (728)
.+++....+|+++++.+++...+....+.. .....++..+++.|+++|......++...+..++..|.+.++||++
T Consensus 386 ~ryi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ 465 (758)
T PRK11034 386 VKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDK 465 (758)
T ss_pred hccccCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHH
Confidence 456777889999999999887765422111 1223467889999999999999888788899999999999999999
Q ss_pred HHHHHHHHHHhhccC---CCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc---cchhhhccCccccccCCc
Q 004834 221 VKQRIIEYLAVRKLK---PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV---KDEADIRGHRRTYIGSMP 294 (728)
Q Consensus 221 vk~~i~~~l~~~~~~---~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~---~~~s~l~g~~~~yvG~~~ 294 (728)
+++.+.+.+...... +..+..+++|+||||||||++|+++|+.++.++++++|+.+ ++.+.+.|.+++|+|+..
T Consensus 466 ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~ 545 (758)
T PRK11034 466 AIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQ 545 (758)
T ss_pred HHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccc
Confidence 999999998765432 22334579999999999999999999999999999999876 458889999999999876
Q ss_pred -chHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC-------
Q 004834 295 -GRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA------- 366 (728)
Q Consensus 295 -g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~------- 366 (728)
|.++++++..+ .+|+||||||+++++. ++.|+++||.+. +.+. .|+.+|++|++||+|||..
T Consensus 546 ~g~L~~~v~~~p--~sVlllDEieka~~~v----~~~LLq~ld~G~---ltd~-~g~~vd~rn~iiI~TsN~g~~~~~~~ 615 (758)
T PRK11034 546 GGLLTDAVIKHP--HAVLLLDEIEKAHPDV----FNLLLQVMDNGT---LTDN-NGRKADFRNVVLVMTTNAGVRETERK 615 (758)
T ss_pred cchHHHHHHhCC--CcEEEeccHhhhhHHH----HHHHHHHHhcCe---eecC-CCceecCCCcEEEEeCCcCHHHHhhc
Confidence 56778887765 3699999999999987 999999999643 4454 4788999999999999954
Q ss_pred ------------------CCCChhhhCCee-EEEcCCCCHHHHHHHHHHhhc--hHHHhhcCCCccccccCHHHHHHHHH
Q 004834 367 ------------------QPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLI--PRVLDQHGLGSEFLQIPEAMVKLVIQ 425 (728)
Q Consensus 367 ------------------~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~--~~~~~~~~~~~~~~~i~d~~l~~l~~ 425 (728)
..|+|+|++|++ +|.|++++.++..+|+..++. .+.++.+|+ .+.++++++++|++
T Consensus 616 ~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i---~l~~~~~~~~~l~~ 692 (758)
T PRK11034 616 SIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGV---SLEVSQEARDWLAE 692 (758)
T ss_pred ccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCC---CceECHHHHHHHHH
Confidence 248899999997 899999999999999998874 344555665 48999999999996
Q ss_pred -HcccccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCceeEeecc
Q 004834 426 -RYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIP 490 (728)
Q Consensus 426 -~~~~~~G~R~L~~~I~~l~r~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~ 490 (728)
.|...+|+|+|+|.|++.+. .|+|+.+++|...+|+++.|++..
T Consensus 693 ~~~~~~~GAR~l~r~i~~~l~---------------------~~la~~il~~~~~~~~~~~v~~~~ 737 (758)
T PRK11034 693 KGYDRAMGARPMARVIQDNLK---------------------KPLANELLFGSLVDGGQVTVALDK 737 (758)
T ss_pred hCCCCCCCCchHHHHHHHHHH---------------------HHHHHHHHhCcccCCCEEEEEEEC
Confidence 88999999999999999884 467777888999999999998764
No 20
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=99.98 E-value=1.2e-31 Score=299.58 Aligned_cols=183 Identities=23% Similarity=0.365 Sum_probs=158.6
Q ss_pred CceeechhhhhhhcCCCccCchHHHhhhcCCceeEeeEEeecCceeEEEEEEEecC---CceEEEeeccchHHHHHHHHH
Q 004834 506 SPLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEATAMRG---KGELHLTGQLGDVIKESAQIA 582 (728)
Q Consensus 506 ~~~~It~~~L~~~Lg~~~~~~~~~~~~~~~~G~~~gl~~~~~gg~~~~iE~~~~~G---~~~~~~tG~~~~~~kES~~~a 582 (728)
..|.||.++|.++.+|+.++..++ ..+.+|.+.+.++.|+.+.+++|||.+.+| .|+++++|.... ++....
T Consensus 268 ~~f~it~~Gl~~v~~ps~~f~~~~--~~~~~g~~~~~~~~G~r~~~veVqalv~~~~~~~p~~~~~G~~~~--r~~~~~- 342 (454)
T TIGR00416 268 GIFEMTEQGLREVLNPSAIFLSRR--EEPMSGSSITVTWEGTRPLLVEIQALVSPTSFANPRRVATGLDQN--RLALLL- 342 (454)
T ss_pred EEEEEecCCceecCChhHhhhccC--CCCCCceEEEEEEEcccCEEEEEEEEecCCCCCCCCEEEEcCccH--HHHHHH-
Confidence 368999999999999999888333 345789999999999999999999999988 899999998554 322222
Q ss_pred HHHHHHHhhhccchhcccCCC-CCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCeEEEeeeCCCceeeec
Q 004834 583 LTWVRARATDLQLVAEDGMNL-LQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPV 661 (728)
Q Consensus 583 ~~~~~~~~~~l~~~~~~~~~~-~~~~di~i~~~~g~~~kdGpsaglaia~allSa~~~~~v~~~~a~tGEi~L~G~V~~V 661 (728)
+.++++.++ |+++|||||+. |+++|+||++|||||+||+|++.++|++++++|+|||+|+|+|+||
T Consensus 343 ------------Avl~k~~g~~~~~~di~vNl~-ggl~~~~~~~DLaia~ailss~~~~~~~~~~~~~GElgL~Gevr~v 409 (454)
T TIGR00416 343 ------------AVLEKRLGLPLADQDVFLNVA-GGVKVSEPAADLALLIAIVSSFRDRPLDPDLVFLGEVGLAGEIRPV 409 (454)
T ss_pred ------------HHHHHhcCCCCCCceEEEEcc-CCcccCCccccHHHHHHHHHhCCCCCCCCCEEEEEEecCCeEEEee
Confidence 233344555 89999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCCeeeccccCccccccchHhhhCCcEEEEeCCHHHHH
Q 004834 662 GGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVL 712 (728)
Q Consensus 662 ggi~~ki~~A~~~G~~~viiP~~n~~d~~~ip~~~~~~i~i~~v~~~~e~~ 712 (728)
+|+.+++.+|++.|++++|+|++|..+ ..+ .+++|++|+|+.|++
T Consensus 410 ~g~~~~~~~a~~~G~~~~ivP~~n~~e-~~~-----~~i~i~~v~~l~e~~ 454 (454)
T TIGR00416 410 PSLEERLKEAAKLGFKRAIVPKANSPK-TAP-----EGIKVIGVKKVGDAL 454 (454)
T ss_pred CCHHHHHHHHHHcCCCEEEeCcccccc-ccc-----CCcEEEEcCcHHHhC
Confidence 999999999999999999999999865 222 499999999999984
No 21
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.6e-28 Score=278.29 Aligned_cols=354 Identities=24% Similarity=0.308 Sum_probs=232.6
Q ss_pred CCcEEEEecccccCCCCCCCHHHHHHHhc-Ccccccc-cccCCCCeeecCC----CcEEEEecCCC--CCCChhhhCCee
Q 004834 307 CNPVMLLDEIDKTGSDVRGDPASALLEVL-DPEQNKT-FNDHYLNVPFDLS----KVIFVATANRA--QPIPPPLLDRME 378 (728)
Q Consensus 307 ~~~VlllDEidkl~~~~~~~~~~~Ll~~L-d~~~~~~-~~d~~~~~~~d~~----~vi~I~TtN~~--~~l~~~Ll~R~~ 378 (728)
+.+||||||+..+.... +..+|..| +..+... ..+...+.+++.. .+.+|+..|.- ..+.+++.+|.+
T Consensus 225 ngGVLiIdei~lL~~~~----~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~ 300 (647)
T COG1067 225 NGGVLIIDEIGLLAQPL----QWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIE 300 (647)
T ss_pred cCcEEEEEhhhhhCcHH----HHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHHHHh
Confidence 45799999999998655 55555544 3322211 1122223333222 12566666664 355666666553
Q ss_pred ---E-EEcCC--C-CHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHH----HHHHHHHHHHH
Q 004834 379 ---V-IELPG--Y-TPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL----ERNLAALARAA 447 (728)
Q Consensus 379 ---v-I~~~~--~-t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L----~~~I~~l~r~a 447 (728)
+ .+|.. + +++.+.+.+..+. ....++.++ ..++.+++..|++...+.+|-+.- -++|.++++.|
T Consensus 301 g~~y~ae~~~~m~~~~~nr~k~~~~~~-q~v~~d~~i----p~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A 375 (647)
T COG1067 301 GFGYEAEFEDTMPITDANRSKLVQFYV-QELARDGNI----PHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREA 375 (647)
T ss_pred hcceEEEEcCCCCCChHHHHHHHHHHH-HHHHhcCCC----CCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHh
Confidence 2 55544 3 5677777776654 233333243 689999999999855555553321 26777777754
Q ss_pred HHHHHHHhhhhcCCCCccccccCCccccccccCCCceeEeeccCCCcccccccccccCC--ceeechhhhhhhcCCCccC
Q 004834 448 AVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRITS--PLVVDEAMLEKVLGPPRFD 525 (728)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~It~~~L~~~Lg~~~~~ 525 (728)
+.-+..+ +. .-.+..|+..+++... .-.+-+..++.+++--.+.
T Consensus 376 ~~ia~~~--~~--------------------------------~~I~ae~Ve~a~~~~~~~e~~l~e~~~~~~~~~~~li 421 (647)
T COG1067 376 GDIAVSE--GR--------------------------------KLITAEDVEEALQKRELREGQLAERYIEDIKGGQILI 421 (647)
T ss_pred hHHHhcC--Cc--------------------------------ccCcHHHHHHHHHhhhhHHHHHHHHHHHHHhcceEEE
Confidence 4332221 00 0011122322222110 0112222333333211111
Q ss_pred chHHHhhhcCCceeEeeEEeecCc-e----eEEEEEEEecCCceEEEeeccchHHHHHHHHHHHHHHHHhhhccchhccc
Q 004834 526 DREAAERVAAPGISVGLVWTNFGG-E----VQFVEATAMRGKGELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDG 600 (728)
Q Consensus 526 ~~~~~~~~~~~G~~~gl~~~~~gg-~----~~~iE~~~~~G~~~~~~tG~~~~~~kES~~~a~~~~~~~~~~l~~~~~~~ 600 (728)
. .....+|.++||++.+++| . +-.|-+.+..|.|++.-++..++.- +|+..+-..++.. ++..
T Consensus 422 ~----t~G~~VG~ingLsV~~~~~~~~~g~p~~is~~~~~g~g~i~d~er~~~la-g~I~~k~~mI~~~---~~~~---- 489 (647)
T COG1067 422 E----TEGERVGQINGLSVIEVPGHHAFGEPARISCAVHKGDGEIVDIERKAELA-GNIHNKGMMIKQA---FLMS---- 489 (647)
T ss_pred e----eccceeeeeeeeEEEecCCcccccceeEEEeEEecCCCceeehhhhhhhh-hhHHHHHHHHHHH---hcCC----
Confidence 1 1235789999999999976 3 5555556667999999999988877 8888877777642 1111
Q ss_pred CCCCCcccEEEEccCCCCC------CCCchhHHHHHHHHHHhccCCCCCCCeEEEeeeCCCceeeecCCHHHHHH-----
Q 004834 601 MNLLQGRDIHIHFPAGAVP------KDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKIL----- 669 (728)
Q Consensus 601 ~~~~~~~di~i~~~~g~~~------kdGpsaglaia~allSa~~~~~v~~~~a~tGEi~L~G~V~~Vggi~~ki~----- 669 (728)
..++|+||+|+.+..- .||+||++|+|+||+||+.++|+++++||||+|++.|+|.||||+.+||.
T Consensus 490 ---~~~~d~~i~fs~s~~~eqsy~~vDGDSAS~A~~~aliSAl~~~Pv~Q~iAiTGsi~q~G~VqpVGGV~eKIEgf~~~ 566 (647)
T COG1067 490 ---ILNYDIHIPFSASLVFEQSYGEVDGDSASLAEACALISALSKIPVDQDIAITGSIDQFGEVQPVGGVNEKIEGFFRV 566 (647)
T ss_pred ---cccCceeeEEeeEEEEEeecccccCchHHHHHHHHHHHHHhcCCCccceeEEeeeccCCceeecCCcchhhhhhHHH
Confidence 4688999999555444 49999999999999999999999999999999999999999999999999
Q ss_pred --HHHHcCCCeeeccccCccccccchHhh----h-CCcEEEEeCCHHHHHHHHHcCC
Q 004834 670 --AAHRYGIKRVILPERNLKDLVEVPAAV----L-ASLEIILAKRMEDVLEQAFEGG 719 (728)
Q Consensus 670 --~A~~~G~~~viiP~~n~~d~~~ip~~~----~-~~i~i~~v~~~~e~~~~~~~~~ 719 (728)
+|.+.|.++||||++|.+++.. ++++ + ..++|++|+|++||++++|..+
T Consensus 567 c~~~~~~G~q~ViIP~~N~~~l~l-~~~v~~av~~g~f~I~~V~~i~eal~~~~~~~ 622 (647)
T COG1067 567 CQAAGLTGEQGVIIPKANVKDLSL-SEDVVKAVKEGKFEIWPVETIDEALELLLGKG 622 (647)
T ss_pred HHHHhhcCCceEEeccchHhhhhc-cHHHHHHhhcCceEEEEeCcHHHHHHHHhCCC
Confidence 9999999999999999999863 3333 3 4589999999999999999853
No 22
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.95 E-value=5.4e-28 Score=271.86 Aligned_cols=160 Identities=18% Similarity=0.285 Sum_probs=146.3
Q ss_pred EeeEEeecCceeEEEEEEEecCCceEEEeeccchHHHHHHHHHHHHHHHHhhhccchhcccCCCCCcccEEEEccCCCCC
Q 004834 540 VGLVWTNFGGEVQFVEATAMRGKGELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMNLLQGRDIHIHFPAGAVP 619 (728)
Q Consensus 540 ~gl~~~~~gg~~~~iE~~~~~G~~~~~~tG~~~~~~kES~~~a~~~~~~~~~~l~~~~~~~~~~~~~~di~i~~~~g~~~ 619 (728)
++.++.|+.|.++.|||.+.+|.|.|+++|+++.+||||+++ +++++.++|+. |+++|||||++||+++
T Consensus 2 ~s~~~~g~~~~~v~VEv~~~~Glp~f~ivGl~d~~v~Es~er----Vr~al~n~g~~-------~p~~~I~VNlaPggl~ 70 (499)
T TIGR00368 2 YSRSSLGVEAPLITIEVDISKGLPGITIVGLPETTVKESRER----VKSAIKNSGFH-------FPAKRITINLAPADLP 70 (499)
T ss_pred eEEEEecceeEEEEEEEEEcCCCcceEEecCcHHHHHHHHHH----HHHHHHhcCCC-------CCCeeEEEEecCCCee
Confidence 566788888999999999999999999999999999999999 77777777764 8999999999999999
Q ss_pred CCCchhHHHHHHHHHHh--ccCCCCCCCeEEEeeeCCCceeeecCCHHHHHHHHHHcCCCeeeccccCccccccchHhhh
Q 004834 620 KDGPSAGVTLVTALVSL--FSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVL 697 (728)
Q Consensus 620 kdGpsaglaia~allSa--~~~~~v~~~~a~tGEi~L~G~V~~Vggi~~ki~~A~~~G~~~viiP~~n~~d~~~ip~~~~ 697 (728)
|+||++|||||+||+|+ ..++|++.+++|+|||+|+|+|+||+|+.+++.+|++.|++++|||++|..++..++
T Consensus 71 k~g~~~DLaIA~ailsa~~~~~~~~~~~~~~~GElgL~G~vr~V~gi~~~~~~A~~~G~~~~ivP~~n~~e~~~~~---- 146 (499)
T TIGR00368 71 KEGGRFDLPIAIGILAASEQLDAKNLGEYLFLGELALDGKLRGIKGVLPAIALAQKSGRKFIIVPKENAEEASLID---- 146 (499)
T ss_pred ccCccccHHHHHHHHHhccCCCCCcccCEEEEEEecCCceeccCcCHHHHHHHHHHcCCCEEEechhhhhhhccCC----
Confidence 99999999999999999 555566789999999999999999999999999999999999999999987654443
Q ss_pred CCcEEEEeCCHHHHHHHH
Q 004834 698 ASLEIILAKRMEDVLEQA 715 (728)
Q Consensus 698 ~~i~i~~v~~~~e~~~~~ 715 (728)
+++|++|+|+.|+++++
T Consensus 147 -~i~v~~v~~L~e~~~~l 163 (499)
T TIGR00368 147 -GLNIYGADHLKEVVKFL 163 (499)
T ss_pred -CcEEEEchhHHHHHHHh
Confidence 99999999999999976
No 23
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.7e-28 Score=250.33 Aligned_cols=228 Identities=25% Similarity=0.355 Sum_probs=180.9
Q ss_pred CCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCC-------CCCCEEEEEcCCCCChhHHHHHHHHH
Q 004834 191 LPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 191 iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~-------~~~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
+|-.....-..+...+..+.-..++.|+++.++.|.+.+..+..+|. .++.++|||||||||||.||||+|+.
T Consensus 129 Lp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~ 208 (406)
T COG1222 129 LPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ 208 (406)
T ss_pred CCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 44433333223444455566778999999999999999988876554 57779999999999999999999999
Q ss_pred hCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCC-----CC--HHHHHHHhc
Q 004834 264 LGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVR-----GD--PASALLEVL 335 (728)
Q Consensus 264 l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~-----~~--~~~~Ll~~L 335 (728)
.+..|+++..+++.. +|+|..+..+.+.|..|....| ||||||||.+...+. || .|..|+++|
T Consensus 209 T~AtFIrvvgSElVq---------KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL 279 (406)
T COG1222 209 TDATFIRVVGSELVQ---------KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELL 279 (406)
T ss_pred cCceEEEeccHHHHH---------HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHH
Confidence 999999998776433 8999999999999988876655 999999999987652 22 377888887
Q ss_pred CcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccc
Q 004834 336 DPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEF 412 (728)
Q Consensus 336 d~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~ 412 (728)
. |..+|-. ..|+-+|++||+++.+||||++ ||+ .|+||.|+.+.|.+|++.|..+
T Consensus 280 ~--qlDGFD~--------~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk------------ 337 (406)
T COG1222 280 N--QLDGFDP--------RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK------------ 337 (406)
T ss_pred H--hccCCCC--------CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh------------
Confidence 5 3344533 3578899999999999999998 998 7999999999999999999532
Q ss_pred cccCHH-HHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 413 LQIPEA-MVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 413 ~~i~d~-~l~~l~~~~~~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
.+++++ -++.+++...+.+| ++|.++|.+|.+.++++
T Consensus 338 M~l~~dvd~e~la~~~~g~sG-----AdlkaictEAGm~AiR~ 375 (406)
T COG1222 338 MNLADDVDLELLARLTEGFSG-----ADLKAICTEAGMFAIRE 375 (406)
T ss_pred ccCccCcCHHHHHHhcCCCch-----HHHHHHHHHHhHHHHHh
Confidence 223222 25667776677778 89999999999999997
No 24
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.6e-27 Score=274.67 Aligned_cols=279 Identities=24% Similarity=0.367 Sum_probs=229.8
Q ss_pred CCchhHHHHHHHHcCCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCC--CCCEEEEEcCCCCChh
Q 004834 177 GYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDA--RGPVLCFVGPPGVGKT 254 (728)
Q Consensus 177 ~~~~~~~~~~~~~~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~--~~~~lLL~GPpGtGKT 254 (728)
....+......|+++|.......+...+..+.+.|.+.|+||+++...|.+++......... +...++|.||.|+|||
T Consensus 526 ~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt 605 (898)
T KOG1051|consen 526 GESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKT 605 (898)
T ss_pred CccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHH
Confidence 34467778889999999999988889999999999999999999999999999876643333 4457999999999999
Q ss_pred HHHHHHHHHhC---CCeEEEecCCccchhhhccCccccccCCc-chHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHH
Q 004834 255 SLASSIASALG---RKFIRISLGGVKDEADIRGHRRTYIGSMP-GRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASA 330 (728)
Q Consensus 255 ~LakalA~~l~---~~~~~i~~~~~~~~s~l~g~~~~yvG~~~-g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~ 330 (728)
.||+++|..+. ..+++++|+++...+.+.|.+++|+|+.. |.+++++++.|+ +||||||||+++++. ++.
T Consensus 606 ~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~--sVVLfdeIEkAh~~v----~n~ 679 (898)
T KOG1051|consen 606 ELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPY--SVVLFEEIEKAHPDV----LNI 679 (898)
T ss_pred HHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCc--eEEEEechhhcCHHH----HHH
Confidence 99999999983 57999999999999999999999999998 599999999875 599999999999998 999
Q ss_pred HHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC----------------------------------------CCC
Q 004834 331 LLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ----------------------------------------PIP 370 (728)
Q Consensus 331 Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~----------------------------------------~l~ 370 (728)
|+++||.+ +++|.. |+.+|++|++||+|+|... .+.
T Consensus 680 llq~lD~G---rltDs~-Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r 755 (898)
T KOG1051|consen 680 LLQLLDRG---RLTDSH-GREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFR 755 (898)
T ss_pred HHHHHhcC---ccccCC-CcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccC
Confidence 99999974 355544 9999999999999988731 356
Q ss_pred hhhhCCee-EEEcCCCCHHHHHHHHHHhhchH--HHhhcCCCccccccCHHHHHHHHH-HcccccchHHHHHHHHHHHHH
Q 004834 371 PPLLDRME-VIELPGYTPEEKLRIAMRHLIPR--VLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAALARA 446 (728)
Q Consensus 371 ~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~--~~~~~~~~~~~~~i~d~~l~~l~~-~~~~~~G~R~L~~~I~~l~r~ 446 (728)
|+|++|.+ ++.|.+++.++..+|+...+..- .++..+ ....+++.+...++. .|+..+|+|.+++.|++.+.
T Consensus 756 ~Ef~nrid~i~lf~~l~~~~~~~i~~~~~~e~~~r~~~~~---~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~- 831 (898)
T KOG1051|consen 756 KEFLNRIDELDLNLPLDRDELIEIVNKQLTEIEKRLEERE---LLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFE- 831 (898)
T ss_pred hHHhcccceeeeecccchhhHhhhhhhHHHHHHHHhhhhH---HHHHHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHH-
Confidence 88888886 78889999888888887765321 122221 346788888888885 89999999999999988873
Q ss_pred HHHHHHHHhhhhcCCCCccccccCCccccccccCCCceeEeecc
Q 004834 447 AAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIP 490 (728)
Q Consensus 447 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~ 490 (728)
+.++..++ +.+.++.++.|....
T Consensus 832 --------------------~~la~~~l-~ei~~~~~~~i~~~~ 854 (898)
T KOG1051|consen 832 --------------------NRLAEALL-GEVEDGLTERILVAD 854 (898)
T ss_pred --------------------HHHhhhhe-eeecCCceEEEEecc
Confidence 34555566 777777777776554
No 25
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-26 Score=255.23 Aligned_cols=209 Identities=24% Similarity=0.357 Sum_probs=175.9
Q ss_pred HHHhhhccccchHHHHHHHHHHHHhhccCCC-------CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccch
Q 004834 207 AKERLDSDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDE 279 (728)
Q Consensus 207 ~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~-------~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~ 279 (728)
..+.-++++.|++++|+.+.+.+.++..++. .++.++|||||||||||++||++|++.+.+|..+...+..+
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s- 506 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS- 506 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH-
Confidence 3444566899999999999998877654332 56779999999999999999999999999999998877666
Q ss_pred hhhccCccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCCCC-------HHHHHHHhcCcccccccccCCCCee
Q 004834 280 ADIRGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRGD-------PASALLEVLDPEQNKTFNDHYLNVP 351 (728)
Q Consensus 280 s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~~~-------~~~~Ll~~Ld~~~~~~~~d~~~~~~ 351 (728)
.|+|..+..+.+.|++|....| |+||||||.+...+.++ ..+.||.-||...
T Consensus 507 --------k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e------------ 566 (693)
T KOG0730|consen 507 --------KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE------------ 566 (693)
T ss_pred --------HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc------------
Confidence 7999999999999999987666 99999999998876332 2577888888532
Q ss_pred ecCCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHH-HHHHHHHHc
Q 004834 352 FDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEA-MVKLVIQRY 427 (728)
Q Consensus 352 ~d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~-~l~~l~~~~ 427 (728)
..+++++|++||+++.||++|++ ||| +|+++.|+.+.|.+|++.++. ...++++ .++.|++..
T Consensus 567 -~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k------------kmp~~~~vdl~~La~~T 633 (693)
T KOG0730|consen 567 -ALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK------------KMPFSEDVDLEELAQAT 633 (693)
T ss_pred -ccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh------------cCCCCccccHHHHHHHh
Confidence 23689999999999999999999 998 899999999999999999852 2344444 577888877
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 428 TREAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 428 ~~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
.+.+| ++|..+|+.|++.++++
T Consensus 634 ~g~SG-----Ael~~lCq~A~~~a~~e 655 (693)
T KOG0730|consen 634 EGYSG-----AEIVAVCQEAALLALRE 655 (693)
T ss_pred ccCCh-----HHHHHHHHHHHHHHHHH
Confidence 78888 89999999999999987
No 26
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.3e-26 Score=249.19 Aligned_cols=210 Identities=23% Similarity=0.328 Sum_probs=170.9
Q ss_pred HHhhhccccchHHHHHHHHHHHHhhccCCC-------CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchh
Q 004834 208 KERLDSDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA 280 (728)
Q Consensus 208 ~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~-------~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s 280 (728)
.++-..++.|+++++..+..++..+..+++ ..+.++||+||||||||.|||++|++.+.+|+.|...+..+
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN-- 583 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN-- 583 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH--
Confidence 344567899999999999998877655443 45668999999999999999999999999999998766544
Q ss_pred hhccCccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCCCC-------HHHHHHHhcCcccccccccCCCCeee
Q 004834 281 DIRGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRGD-------PASALLEVLDPEQNKTFNDHYLNVPF 352 (728)
Q Consensus 281 ~l~g~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~~~-------~~~~Ll~~Ld~~~~~~~~d~~~~~~~ 352 (728)
.|||+++..+.+.|.++..+.| ||||||+|.+.+.+... ..|.||.-||...
T Consensus 584 -------kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~------------- 643 (802)
T KOG0733|consen 584 -------KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLE------------- 643 (802)
T ss_pred -------HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccc-------------
Confidence 7999999999999999987766 99999999999876321 2688888888543
Q ss_pred cCCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCcccccc-CHHHHHHHHH--H
Q 004834 353 DLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQI-PEAMVKLVIQ--R 426 (728)
Q Consensus 353 d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i-~d~~l~~l~~--~ 426 (728)
+-.+|++|++||+++-++|++|+ ||+ +++++.|+.++|..|++.+... + ...+ +|-.++.|+. .
T Consensus 644 ~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn-----~-----k~pl~~dVdl~eia~~~~ 713 (802)
T KOG0733|consen 644 ERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKN-----T-----KPPLSSDVDLDEIARNTK 713 (802)
T ss_pred cccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhcc-----C-----CCCCCcccCHHHHhhccc
Confidence 23678999999999999999998 998 7999999999999999988531 1 1233 3334666765 4
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 427 YTREAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 427 ~~~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
|.++.| ++|..+||+|++-++++
T Consensus 714 c~gftG-----ADLaaLvreAsi~AL~~ 736 (802)
T KOG0733|consen 714 CEGFTG-----ADLAALVREASILALRE 736 (802)
T ss_pred ccCCch-----hhHHHHHHHHHHHHHHH
Confidence 446777 89999999999999987
No 27
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=99.92 E-value=2.9e-25 Score=202.63 Aligned_cols=121 Identities=30% Similarity=0.541 Sum_probs=113.7
Q ss_pred EEEEEecCCceEEEeeccchHHHHHHHHHHHHHHHHhhhccchhcccCCCCCcccEEEEccCCCCCCCCchhHHHHHHHH
Q 004834 554 VEATAMRGKGELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMNLLQGRDIHIHFPAGAVPKDGPSAGVTLVTAL 633 (728)
Q Consensus 554 iE~~~~~G~~~~~~tG~~~~~~kES~~~a~~~~~~~~~~l~~~~~~~~~~~~~~di~i~~~~g~~~kdGpsaglaia~al 633 (728)
|||+..+|.|.+.++|+++..++||.+| +++.+.+.|+. |+++||+||+.+++++|.||++|||||+|+
T Consensus 1 VEv~~~~Glp~~~ivGl~~~av~esr~R----v~~al~~~g~~-------~p~~~i~VNlap~~l~k~g~~~DLaIA~ai 69 (121)
T PF13541_consen 1 VEVDISRGLPSFNIVGLPDTAVKESRER----VRSALKNSGFP-------FPNQDITVNLAPADLKKEGPAFDLAIAIAI 69 (121)
T ss_pred CEEEEcCCCCceEEecCchHHHHHHHHH----HHHHHHhcCCC-------CCcceeeeEEEeCCEEEeeeeehHHHHHHH
Confidence 6999999999999999999999999999 55554455654 899999999999999999999999999999
Q ss_pred HHhccCCCCCCCeEEEeeeCCCceeeecCCHHHHHHHHHHcCCCeeeccccC
Q 004834 634 VSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERN 685 (728)
Q Consensus 634 lSa~~~~~v~~~~a~tGEi~L~G~V~~Vggi~~ki~~A~~~G~~~viiP~~n 685 (728)
+|+..++|++.+++|.|||+|+|+|+||.|+.+++.+|++.|++++++|++|
T Consensus 70 lsa~~~~~~~~~~~~~GEl~L~G~ir~v~~~~~~~~~A~~~G~~~vivP~~N 121 (121)
T PF13541_consen 70 LSAFGQIPIPEDTVFIGELGLDGEIRPVPGILPRIIEAKKLGFKRVIVPKAN 121 (121)
T ss_pred HHhCCCcccCCCEEEEEEecCCccEEecCcHHHHHHHHHHCCCCEEEeCCCC
Confidence 9999999999999999999999999999999999999999999999999988
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.92 E-value=1.5e-25 Score=246.04 Aligned_cols=301 Identities=22% Similarity=0.272 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHc-----
Q 004834 116 KEFLLRQQMRAIKEELGDNDDDEDDLVALERKMQSAGMPSNIWKHVQKELRRLKKMQPQQPGYTSSRVYLELIAD----- 190 (728)
Q Consensus 116 r~~~l~eql~~i~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~----- 190 (728)
+...+++|+++++++.+. .+.++..+++++...+.|+.....+.+++.+...+.+.++++....++.+|+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (364)
T TIGR01242 7 RIRKLEDEKRSLEKEKIR---LERELERLRSEIERLRSPPLIVGTVLEVLDDNRVVVKSSTGPNFVVNVSAFIDRKSLKP 83 (364)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCeEEEEEEEEecCCEEEEEeCCCCEEEEeccccCCHhHCCC
Confidence 345677788888888763 356788888888888888777777776676666666666676666666666322
Q ss_pred ----------------CCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCC-------CCCCCEEEEEc
Q 004834 191 ----------------LPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVG 247 (728)
Q Consensus 191 ----------------iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~-------~~~~~~lLL~G 247 (728)
+||........+.+.........+++|+++.++.+.+++..+..++ -.++.++||+|
T Consensus 84 g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~G 163 (364)
T TIGR01242 84 GARVALNQQTLTIVDVLPTSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYG 163 (364)
T ss_pred CCEEEEcCCcceEEeecccccccccccceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEEC
Confidence 6777654433555656666777899999999999999987654432 14566899999
Q ss_pred CCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCCC-
Q 004834 248 PPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRG- 325 (728)
Q Consensus 248 PpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~~- 325 (728)
|||||||++|+++|+.++.+++++..++.. ..|+|.....+.+.+..+....| ||||||+|.+.....+
T Consensus 164 ppGtGKT~lakaia~~l~~~~~~v~~~~l~---------~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~ 234 (364)
T TIGR01242 164 PPGTGKTLLAKAVAHETNATFIRVVGSELV---------RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDS 234 (364)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEecchHHHH---------HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccC
Confidence 999999999999999999999888654322 24677766667777766654444 9999999999754321
Q ss_pred ----CH--HHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHH
Q 004834 326 ----DP--ASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMR 396 (728)
Q Consensus 326 ----~~--~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~ 396 (728)
++ +..+.+++.... .+ .+.+++.||+|||.++.+++++++ ||+ .|.|+.|+.+++.+|++.
T Consensus 235 ~~~~~~~~~~~l~~ll~~ld--~~--------~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~ 304 (364)
T TIGR01242 235 GTSGDREVQRTLMQLLAELD--GF--------DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKI 304 (364)
T ss_pred CCCccHHHHHHHHHHHHHhh--CC--------CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHH
Confidence 11 344555543210 11 013467899999999999999997 897 799999999999999988
Q ss_pred hhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 397 HLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 397 ~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
++.+ ..+. ..++ +..++....+..| ++|..+|+.|++.++++
T Consensus 305 ~~~~-----~~l~---~~~~---~~~la~~t~g~sg-----~dl~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 305 HTRK-----MKLA---EDVD---LEAIAKMTEGASG-----ADLKAICTEAGMFAIRE 346 (364)
T ss_pred HHhc-----CCCC---ccCC---HHHHHHHcCCCCH-----HHHHHHHHHHHHHHHHh
Confidence 7521 1111 1122 4555555555555 78899999999998876
No 29
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.92 E-value=1.1e-23 Score=232.21 Aligned_cols=244 Identities=19% Similarity=0.291 Sum_probs=178.1
Q ss_pred hcHHHHHHhhhccccchHHHHHHHHHHHHhh--ccCC--------CCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEE
Q 004834 202 LDLKAAKERLDSDHYGLVRVKQRIIEYLAVR--KLKP--------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRI 271 (728)
Q Consensus 202 ~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~--~~~~--------~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i 271 (728)
....++...|++.++||+.+++.+...+... ++.. .....++||+||||||||++|+++|..++.+|+++
T Consensus 60 ~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~i 139 (412)
T PRK05342 60 PTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIA 139 (412)
T ss_pred CCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceec
Confidence 3466778889999999999999997765322 1111 12346899999999999999999999999999999
Q ss_pred ecCCccchhhhccCccccccCCcchHH-HHHhhc-----CCCCcEEEEecccccCCCCCC----------CHHHHHHHhc
Q 004834 272 SLGGVKDEADIRGHRRTYIGSMPGRLI-DGLKRV-----GVCNPVMLLDEIDKTGSDVRG----------DPASALLEVL 335 (728)
Q Consensus 272 ~~~~~~~~s~l~g~~~~yvG~~~g~l~-~~~~~a-----~~~~~VlllDEidkl~~~~~~----------~~~~~Ll~~L 335 (728)
+++.+.. .+|+|...+.+. ..+..+ ...++|+||||||++++...+ +.+++||++|
T Consensus 140 d~~~l~~--------~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~L 211 (412)
T PRK05342 140 DATTLTE--------AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIL 211 (412)
T ss_pred chhhccc--------CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHH
Confidence 9876432 268887655443 332221 123569999999999865211 2589999999
Q ss_pred Cccc------ccccccCCCCeeecCCCcEEEEecCCC------------------------------C------------
Q 004834 336 DPEQ------NKTFNDHYLNVPFDLSKVIFVATANRA------------------------------Q------------ 367 (728)
Q Consensus 336 d~~~------~~~~~d~~~~~~~d~~~vi~I~TtN~~------------------------------~------------ 367 (728)
|+.. .....++..-+.++.+|++|||+.+.. .
T Consensus 212 eg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~ 291 (412)
T PRK05342 212 EGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLI 291 (412)
T ss_pred hcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHH
Confidence 8432 122333344456788888888644311 0
Q ss_pred --CCChhhhCCee-EEEcCCCCHHHHHHHHHH---hhchHHHhhcCCCccccccCHHHHHHHHH-HcccccchHHHHHHH
Q 004834 368 --PIPPPLLDRME-VIELPGYTPEEKLRIAMR---HLIPRVLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNL 440 (728)
Q Consensus 368 --~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~---~l~~~~~~~~~~~~~~~~i~d~~l~~l~~-~~~~~~G~R~L~~~I 440 (728)
.|.|+|++|++ ++.|.+++.+++.+|+.. .+.++..+........+.++++++++|++ .|..++|+|.|++.|
T Consensus 292 ~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrrii 371 (412)
T PRK05342 292 KFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSIL 371 (412)
T ss_pred HHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHH
Confidence 26899999997 799999999999999984 34443333322334568999999999998 599999999999999
Q ss_pred HHHHHHHHHHHHH
Q 004834 441 AALARAAAVKVAE 453 (728)
Q Consensus 441 ~~l~r~a~~~~~~ 453 (728)
+++++...+++..
T Consensus 372 e~~l~~~~~~~p~ 384 (412)
T PRK05342 372 EEILLDVMFELPS 384 (412)
T ss_pred HHHhHHHHHhccc
Confidence 9999987776553
No 30
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.3e-24 Score=226.55 Aligned_cols=208 Identities=24% Similarity=0.287 Sum_probs=163.5
Q ss_pred ccccchHHHHHHHHHHHHhhccCCC------CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPD------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 286 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~------~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~ 286 (728)
.+|.|++++|+.+.+++..+...|. .+-.++|++||||||||.|||++|.+++..|+.|+.+...+
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS-------- 283 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS-------- 283 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh--------
Confidence 5789999999999999987755332 55669999999999999999999999999999988776555
Q ss_pred cccccCCcchHHHHHhhcCCC-CcEEEEecccccCCCCCCCH--------HHHHHHhcCcccccccccCCCCeeecCCC-
Q 004834 287 RTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRGDP--------ASALLEVLDPEQNKTFNDHYLNVPFDLSK- 356 (728)
Q Consensus 287 ~~yvG~~~g~l~~~~~~a~~~-~~VlllDEidkl~~~~~~~~--------~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~- 356 (728)
+|-|.++..+.-.|..+... .++|||||||.++..+.++. .+.||..||..++. .+.++
T Consensus 284 -KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t----------~e~~k~ 352 (491)
T KOG0738|consen 284 -KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGT----------LENSKV 352 (491)
T ss_pred -hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccc----------ccccee
Confidence 78888887776666666543 45999999999987663321 47899999975432 12222
Q ss_pred cEEEEecCCCCCCChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHH
Q 004834 357 VIFVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 435 (728)
Q Consensus 357 vi~I~TtN~~~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~ 435 (728)
|+++++||.++.||++|++||+ .|.+|-|+.+.|..+++..|.. ....++--++.|++...+++|
T Consensus 353 VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~-----------~~~~~~~~~~~lae~~eGySG--- 418 (491)
T KOG0738|consen 353 VMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRS-----------VELDDPVNLEDLAERSEGYSG--- 418 (491)
T ss_pred EEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcc-----------ccCCCCccHHHHHHHhcCCCh---
Confidence 5677799999999999999998 7999999999999999887521 112233445666766666677
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 004834 436 LERNLAALARAAAVKVAEQE 455 (728)
Q Consensus 436 L~~~I~~l~r~a~~~~~~~~ 455 (728)
.+|..+||.|++..++..
T Consensus 419 --aDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 419 --ADITNVCREASMMAMRRK 436 (491)
T ss_pred --HHHHHHHHHHHHHHHHHH
Confidence 899999999999999973
No 31
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.4e-24 Score=211.57 Aligned_cols=211 Identities=24% Similarity=0.358 Sum_probs=161.8
Q ss_pred HHhhhccccchHHHHHHHHHHHHhhccC-------CCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchh
Q 004834 208 KERLDSDHYGLVRVKQRIIEYLAVRKLK-------PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA 280 (728)
Q Consensus 208 ~~~L~~~i~G~~~vk~~i~~~l~~~~~~-------~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s 280 (728)
.+....++.|++-.|+.|.+.+..+..+ .-.++.++||+||||||||+|++++|+.....|+++..+++..
T Consensus 150 pdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq-- 227 (408)
T KOG0727|consen 150 PDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ-- 227 (408)
T ss_pred CCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH--
Confidence 3455678999999999999988765432 2356778999999999999999999999999999998776543
Q ss_pred hhccCccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCC----C---CHHHHHHHhcCcccccccccCCCCeee
Q 004834 281 DIRGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVR----G---DPASALLEVLDPEQNKTFNDHYLNVPF 352 (728)
Q Consensus 281 ~l~g~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~----~---~~~~~Ll~~Ld~~~~~~~~d~~~~~~~ 352 (728)
+|.|..+..+...|+.+..+.| ++||||||.+..++- | ..+..|+++|. |..+|-.
T Consensus 228 -------kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~elln--qmdgfdq------- 291 (408)
T KOG0727|consen 228 -------KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLN--QMDGFDQ------- 291 (408)
T ss_pred -------HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHH--hccCcCc-------
Confidence 7999999999999998876655 999999999977541 1 22566777765 2234432
Q ss_pred cCCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHH-HHHHHHHcc
Q 004834 353 DLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAM-VKLVIQRYT 428 (728)
Q Consensus 353 d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~-l~~l~~~~~ 428 (728)
..|+-+|++||+.++++|+|++ |++ -|+||.++..+++-++.-... ...+++++ ++.++.+-.
T Consensus 292 -~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~tits------------km~ls~~vdle~~v~rpd 358 (408)
T KOG0727|consen 292 -TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITS------------KMNLSDEVDLEDLVARPD 358 (408)
T ss_pred -ccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhh------------cccCCcccCHHHHhcCcc
Confidence 2477899999999999999998 998 699999998888777665421 12333332 444544444
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 429 REAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 429 ~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
.-+| +.|..+|++|.+.+++.
T Consensus 359 kis~-----adi~aicqeagm~avr~ 379 (408)
T KOG0727|consen 359 KISG-----ADINAICQEAGMLAVRE 379 (408)
T ss_pred ccch-----hhHHHHHHHHhHHHHHh
Confidence 4566 79999999999999987
No 32
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.91 E-value=2.9e-23 Score=227.43 Aligned_cols=240 Identities=20% Similarity=0.271 Sum_probs=177.3
Q ss_pred cHHHHHHhhhccccchHHHHHHHHHHHHhh--ccCC---C-------CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 203 DLKAAKERLDSDHYGLVRVKQRIIEYLAVR--KLKP---D-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 203 ~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~--~~~~---~-------~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
...++...|++.++||+++++.+...+... .+.. . ....++||+||||||||++|+++|..++.+|..
T Consensus 67 ~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~ 146 (413)
T TIGR00382 67 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAI 146 (413)
T ss_pred CHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEE
Confidence 356678889999999999999998766321 1111 1 123589999999999999999999999999988
Q ss_pred EecCCccchhhhccCccccccCCc-chHHHHHhhcCC-----CCcEEEEecccccCCCCC---------C-CHHHHHHHh
Q 004834 271 ISLGGVKDEADIRGHRRTYIGSMP-GRLIDGLKRVGV-----CNPVMLLDEIDKTGSDVR---------G-DPASALLEV 334 (728)
Q Consensus 271 i~~~~~~~~s~l~g~~~~yvG~~~-g~l~~~~~~a~~-----~~~VlllDEidkl~~~~~---------~-~~~~~Ll~~ 334 (728)
++++.+. ..+|+|+.. +.+...++.++. .++|+||||||++++... | +.++.||++
T Consensus 147 ~da~~L~--------~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~i 218 (413)
T TIGR00382 147 ADATTLT--------EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKI 218 (413)
T ss_pred echhhcc--------ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHH
Confidence 8876642 236888854 445555543322 345999999999987421 1 458999999
Q ss_pred cCcccccccccCCCCeeecCCCcEEEEecCCC---------------------------C--------------------
Q 004834 335 LDPEQNKTFNDHYLNVPFDLSKVIFVATANRA---------------------------Q-------------------- 367 (728)
Q Consensus 335 Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~---------------------------~-------------------- 367 (728)
|+.. ...+. ...|+.+++.++++|+|+|.. +
T Consensus 219 LeG~-~~~v~-~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl 296 (413)
T TIGR00382 219 IEGT-VANVP-PQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDL 296 (413)
T ss_pred hhcc-ceecc-cCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHH
Confidence 9732 11111 123566667777777777761 0
Q ss_pred ---CCChhhhCCee-EEEcCCCCHHHHHHHHHHh---hchHHHhhcCCCccccccCHHHHHHHHH-HcccccchHHHHHH
Q 004834 368 ---PIPPPLLDRME-VIELPGYTPEEKLRIAMRH---LIPRVLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERN 439 (728)
Q Consensus 368 ---~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~---l~~~~~~~~~~~~~~~~i~d~~l~~l~~-~~~~~~G~R~L~~~ 439 (728)
.|.|+|++|++ ++.|.+++.+++.+|+... +.++..+........+.++++++++|++ .|..++|+|.|++.
T Consensus 297 ~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~i 376 (413)
T TIGR00382 297 VKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSI 376 (413)
T ss_pred HHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHH
Confidence 27799999997 7899999999999999875 4455545554455679999999999998 58999999999999
Q ss_pred HHHHHHHHHHHHH
Q 004834 440 LAALARAAAVKVA 452 (728)
Q Consensus 440 I~~l~r~a~~~~~ 452 (728)
|++.+....+++.
T Consensus 377 ie~~l~~~m~e~p 389 (413)
T TIGR00382 377 VEGLLLDVMFDLP 389 (413)
T ss_pred HHHhhHHHHhhCC
Confidence 9999987666544
No 33
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.91 E-value=1.5e-23 Score=234.80 Aligned_cols=164 Identities=18% Similarity=0.229 Sum_probs=152.8
Q ss_pred CceeEeeEEeecCceeEEEEEEEecCCceEEEeeccchHHHHHHHHHHHHHHHHhhhccchhcccCCCCCcccEEEEccC
Q 004834 536 PGISVGLVWTNFGGEVQFVEATAMRGKGELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMNLLQGRDIHIHFPA 615 (728)
Q Consensus 536 ~G~~~gl~~~~~gg~~~~iE~~~~~G~~~~~~tG~~~~~~kES~~~a~~~~~~~~~~l~~~~~~~~~~~~~~di~i~~~~ 615 (728)
.+.+++.++.|+.|.++.|||.+.+|.|.|+++|+++..+|||.+| +|+++.+.|+. ||...|+||+.|
T Consensus 3 ~~~~~s~~~~G~~~~~v~VE~~~~~Glp~f~ivGl~d~~v~Es~eR----vr~Al~n~g~~-------~P~~ritvnL~P 71 (506)
T PRK09862 3 LSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDR----VRSAIINSGYE-------YPAKKITINLAP 71 (506)
T ss_pred ceEEEEEEEeceeeeEEEEEEEEcCCCcceEEeCCcHHHHHHHHHH----HHHHHHhCCCC-------CCCceEEEEeCC
Confidence 4678899999999999999999999999999999999999999999 77777777764 999999999999
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCCCC--CCeEEEeeeCCCceeeecCCHHHHHHHHHHcCCCeeeccccCccccccch
Q 004834 616 GAVPKDGPSAGVTLVTALVSLFSRKRVR--ADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVP 693 (728)
Q Consensus 616 g~~~kdGpsaglaia~allSa~~~~~v~--~~~a~tGEi~L~G~V~~Vggi~~ki~~A~~~G~~~viiP~~n~~d~~~ip 693 (728)
+++||+|+++|||||+|||.+...+|.+ .+++|.||++|+|+|+||.|+.+.+.+|++.|+ ++|||.+|..+...++
T Consensus 72 a~~~K~G~~~DL~IA~~iL~a~~~i~~~~l~~~~~~GEL~LdG~lr~v~g~lp~~~~a~~~g~-~~~vp~~n~~ea~~v~ 150 (506)
T PRK09862 72 ADLPKEGGRYDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGR-KIIVAKDNEDEVGLIN 150 (506)
T ss_pred CCCCCCCccccHHHHHHHHHhcCCCCchhhhCEEEEEEecCCceEeccchHHHHHHHHHHCCC-EEEeehHHHHHHhcCC
Confidence 9999999999999999999998888754 589999999999999999999999999999999 7999999999988777
Q ss_pred HhhhCCcEEEEeCCHHHHHHHHH
Q 004834 694 AAVLASLEIILAKRMEDVLEQAF 716 (728)
Q Consensus 694 ~~~~~~i~i~~v~~~~e~~~~~~ 716 (728)
+++|++|+|+.|++.++-
T Consensus 151 -----~~~v~~~~~L~~~~~~l~ 168 (506)
T PRK09862 151 -----GEGCLIADHLQAVCAFLE 168 (506)
T ss_pred -----CCeEEecCCHHHHHHHHc
Confidence 999999999999999863
No 34
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.89 E-value=2.9e-23 Score=206.06 Aligned_cols=210 Identities=24% Similarity=0.343 Sum_probs=155.6
Q ss_pred HHhhhccccchHHHHHHH---HHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhcc
Q 004834 208 KERLDSDHYGLVRVKQRI---IEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRG 284 (728)
Q Consensus 208 ~~~L~~~i~G~~~vk~~i---~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g 284 (728)
.+..-.+++||+++|+.. .+++..+....+=.+.++||+||||||||++|+++|+....|++.+..+. ++|
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~------liG 189 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATE------LIG 189 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHH------HHH
Confidence 344456899999999764 45555443333345679999999999999999999999999999887544 444
Q ss_pred CccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCC-----CCCH---HHHHHHhcCcccccccccCCCCeeecCC
Q 004834 285 HRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDV-----RGDP---ASALLEVLDPEQNKTFNDHYLNVPFDLS 355 (728)
Q Consensus 285 ~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~-----~~~~---~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~ 355 (728)
.|||....++.+++.++....| |+||||+|.+.-++ +||. .|+||.-||... .-+
T Consensus 190 ---ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~-------------ene 253 (368)
T COG1223 190 ---EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK-------------ENE 253 (368)
T ss_pred ---HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc-------------cCC
Confidence 5888888888888888765544 99999999998765 5665 689999998532 346
Q ss_pred CcEEEEecCCCCCCChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchH
Q 004834 356 KVIFVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVR 434 (728)
Q Consensus 356 ~vi~I~TtN~~~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R 434 (728)
++++|++||.++.+++++++||+ -|+|.-|+.+|+.+|+..+.. ...+ .+..+ +++++....+.+| |
T Consensus 254 GVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k-----~~Pl---pv~~~---~~~~~~~t~g~Sg-R 321 (368)
T COG1223 254 GVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK-----KFPL---PVDAD---LRYLAAKTKGMSG-R 321 (368)
T ss_pred ceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH-----hCCC---ccccC---HHHHHHHhCCCCc-h
Confidence 78999999999999999999997 799999999999999999852 2222 23333 5566665555555 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004834 435 NLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 435 ~L~~~I~~l~r~a~~~~~~~ 454 (728)
+ ..++++..|..+++.+
T Consensus 322 d---ikekvlK~aLh~Ai~e 338 (368)
T COG1223 322 D---IKEKVLKTALHRAIAE 338 (368)
T ss_pred h---HHHHHHHHHHHHHHHh
Confidence 2 2234555555555544
No 35
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=9.4e-23 Score=222.43 Aligned_cols=208 Identities=25% Similarity=0.295 Sum_probs=165.2
Q ss_pred ccccchHHHHHHHHHHHHhhccCCC-------CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccC
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGH 285 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~-------~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~ 285 (728)
+++.|+++....+.+.+.. ..+|. .++.++||+||||||||+||+++|+.++.||+.++..+..+
T Consensus 190 ~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS------- 261 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS------- 261 (802)
T ss_pred hhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc-------
Confidence 4689999999999888765 32232 46678999999999999999999999999999999877655
Q ss_pred ccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCCCC-------HHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 286 RRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRGD-------PASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 286 ~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~~~-------~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
++.|+.+..+.+.|..+....| |+||||||.+.+.+... ..+.|+..||+-.+..+ +-..|
T Consensus 262 --GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~---------~g~~V 330 (802)
T KOG0733|consen 262 --GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT---------KGDPV 330 (802)
T ss_pred --ccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc---------CCCCe
Confidence 7899999999999999876655 99999999999987432 15778888986543321 23458
Q ss_pred EEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchH
Q 004834 358 IFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVR 434 (728)
Q Consensus 358 i~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R 434 (728)
++|++||+++.++|+|++ ||+ -|.+.-|+..+|.+|++.... ...+. ..++ ...|+....+..|
T Consensus 331 lVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~-----~lrl~---g~~d---~~qlA~lTPGfVG-- 397 (802)
T KOG0733|consen 331 LVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICR-----GLRLS---GDFD---FKQLAKLTPGFVG-- 397 (802)
T ss_pred EEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHh-----hCCCC---CCcC---HHHHHhcCCCccc--
Confidence 999999999999999998 998 699999999999999988742 11121 2333 4456665566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 004834 435 NLERNLAALARAAAVKVAEQE 455 (728)
Q Consensus 435 ~L~~~I~~l~r~a~~~~~~~~ 455 (728)
+++..+|+.|+.-+++..
T Consensus 398 ---ADL~AL~~~Aa~vAikR~ 415 (802)
T KOG0733|consen 398 ---ADLMALCREAAFVAIKRI 415 (802)
T ss_pred ---hhHHHHHHHHHHHHHHHH
Confidence 899999999999888763
No 36
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.89 E-value=1e-23 Score=232.70 Aligned_cols=231 Identities=23% Similarity=0.310 Sum_probs=165.9
Q ss_pred HcCCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCC-------CCCCCEEEEEcCCCCChhHHHHHHH
Q 004834 189 ADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIA 261 (728)
Q Consensus 189 ~~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~-------~~~~~~lLL~GPpGtGKT~LakalA 261 (728)
.-+||........+.+....+....+++|+++.++.+.+++..+..++ -.++.++||+||||||||++|+++|
T Consensus 107 ~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia 186 (389)
T PRK03992 107 EVLPSEKDPRVQAMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVA 186 (389)
T ss_pred hcccccccchhheeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHH
Confidence 456776544432344444455566789999999999999887654432 2456689999999999999999999
Q ss_pred HHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCC-cEEEEecccccCCCCCC-----C--HHHHHHH
Q 004834 262 SALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVRG-----D--PASALLE 333 (728)
Q Consensus 262 ~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~-~VlllDEidkl~~~~~~-----~--~~~~Ll~ 333 (728)
+.++.+|+.++++.... .|+|.....+.+.|..+.... .||||||+|.+.....+ + .+..+++
T Consensus 187 ~~~~~~~i~v~~~~l~~---------~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~ 257 (389)
T PRK03992 187 HETNATFIRVVGSELVQ---------KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQ 257 (389)
T ss_pred HHhCCCEEEeehHHHhH---------hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHH
Confidence 99999999988765432 577877777777777665444 49999999999754321 1 1344555
Q ss_pred hcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCc
Q 004834 334 VLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGS 410 (728)
Q Consensus 334 ~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~ 410 (728)
++... ..+. +..++.||+|||.++.++++|++ ||+ .|.|+.|+.++|.+|++.++.+ ..+.
T Consensus 258 lL~~l--d~~~--------~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~-----~~~~- 321 (389)
T PRK03992 258 LLAEM--DGFD--------PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK-----MNLA- 321 (389)
T ss_pred HHHhc--cccC--------CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc-----CCCC-
Confidence 54321 0111 13467899999999999999997 997 7999999999999999988531 1111
Q ss_pred cccccCHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 411 EFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 411 ~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
..+ .+..++....+..| ++|..+|++|++.++++
T Consensus 322 --~~~---~~~~la~~t~g~sg-----adl~~l~~eA~~~a~~~ 355 (389)
T PRK03992 322 --DDV---DLEELAELTEGASG-----ADLKAICTEAGMFAIRD 355 (389)
T ss_pred --CcC---CHHHHHHHcCCCCH-----HHHHHHHHHHHHHHHHc
Confidence 112 24556665556666 79999999999988876
No 37
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.5e-22 Score=225.80 Aligned_cols=208 Identities=24% Similarity=0.393 Sum_probs=160.0
Q ss_pred hhhccccchHHHHHHHHHHHHhhccCCC------CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhc
Q 004834 210 RLDSDHYGLVRVKQRIIEYLAVRKLKPD------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIR 283 (728)
Q Consensus 210 ~L~~~i~G~~~vk~~i~~~l~~~~~~~~------~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~ 283 (728)
+-..|+.|++++|..|.+.+..+..+++ .++.++|||||||||||.+|||+|..+...|..+...+..+
T Consensus 669 V~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN----- 743 (953)
T KOG0736|consen 669 VSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN----- 743 (953)
T ss_pred cchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH-----
Confidence 3346899999999999999988655443 45678999999999999999999999999999887666544
Q ss_pred cCccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCC--CCCH-------HHHHHHhcCcccccccccCCCCeeec
Q 004834 284 GHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDV--RGDP-------ASALLEVLDPEQNKTFNDHYLNVPFD 353 (728)
Q Consensus 284 g~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~--~~~~-------~~~Ll~~Ld~~~~~~~~d~~~~~~~d 353 (728)
.|||.++.++++.|.+|....| |||+||+|.+.|.+ .||. .+.||--||...+. +
T Consensus 744 ----MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~-----------~ 808 (953)
T KOG0736|consen 744 ----MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS-----------S 808 (953)
T ss_pred ----HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCC-----------C
Confidence 7999999999999999987666 99999999999976 3332 67788888854321 2
Q ss_pred CCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCH-HHHHHHHHHhhchHHHhhcCCCccccccCHH-HHHHHHHHcc
Q 004834 354 LSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTP-EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEA-MVKLVIQRYT 428 (728)
Q Consensus 354 ~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~-ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~-~l~~l~~~~~ 428 (728)
...+++|++||+|+-+||+|++ ||| .+++.+... +.+..|++-. . ++ +.++++ -+..+++.+.
T Consensus 809 s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~Al-T----rk-------FkLdedVdL~eiAk~cp 876 (953)
T KOG0736|consen 809 SQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEAL-T----RK-------FKLDEDVDLVEIAKKCP 876 (953)
T ss_pred CCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHH-H----HH-------ccCCCCcCHHHHHhhCC
Confidence 4567999999999999999998 999 566666554 4455555543 2 11 233322 2566777666
Q ss_pred c-ccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 429 R-EAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 429 ~-~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
. ..| +++-.+|..|.+.++++
T Consensus 877 ~~~TG-----ADlYsLCSdA~l~AikR 898 (953)
T KOG0736|consen 877 PNMTG-----ADLYSLCSDAMLAAIKR 898 (953)
T ss_pred cCCch-----hHHHHHHHHHHHHHHHH
Confidence 5 456 78888999888888876
No 38
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.9e-22 Score=216.88 Aligned_cols=209 Identities=24% Similarity=0.320 Sum_probs=164.4
Q ss_pred HHHhhhccccchHHHHHHHHHHHHhhcc------CCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchh
Q 004834 207 AKERLDSDHYGLVRVKQRIIEYLAVRKL------KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA 280 (728)
Q Consensus 207 ~~~~L~~~i~G~~~vk~~i~~~l~~~~~------~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s 280 (728)
....-.+++-|.+++|+.+.+.+...+- ....-++++||+||||||||.|||++|.+.+.||+..+.+++..
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE-- 375 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE-- 375 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh--
Confidence 3344467899999999888876654321 01123458999999999999999999999999999888777655
Q ss_pred hhccCccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCCCCH-------HHHHHHhcCcccccccccCCCCeee
Q 004834 281 DIRGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRGDP-------ASALLEVLDPEQNKTFNDHYLNVPF 352 (728)
Q Consensus 281 ~l~g~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~~~~-------~~~Ll~~Ld~~~~~~~~d~~~~~~~ 352 (728)
-|||....++.+.|..+....| ||||||||.+..++.... .|.||--|| +|..+
T Consensus 376 -------m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmD-----GF~qN------ 437 (752)
T KOG0734|consen 376 -------MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMD-----GFKQN------ 437 (752)
T ss_pred -------hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhc-----CcCcC------
Confidence 6899999999999998876655 999999999998875443 355565565 34332
Q ss_pred cCCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCH-HHHHHHHHHcc
Q 004834 353 DLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPE-AMVKLVIQRYT 428 (728)
Q Consensus 353 d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d-~~l~~l~~~~~ 428 (728)
.+++||++||.++.+|++|.+ ||| .|.+|.|+...|.+|++.|+.+ +.+++ -....|+++..
T Consensus 438 --eGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k------------i~~~~~VD~~iiARGT~ 503 (752)
T KOG0734|consen 438 --EGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK------------IPLDEDVDPKIIARGTP 503 (752)
T ss_pred --CceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc------------CCcccCCCHhHhccCCC
Confidence 478999999999999999998 998 6999999999999999999742 22222 12445677888
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 429 REAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 429 ~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
+.+| ++++++++.||+++..+
T Consensus 504 GFsG-----AdLaNlVNqAAlkAa~d 524 (752)
T KOG0734|consen 504 GFSG-----ADLANLVNQAALKAAVD 524 (752)
T ss_pred CCch-----HHHHHHHHHHHHHHHhc
Confidence 8888 89999999999988765
No 39
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.88 E-value=1.3e-21 Score=215.17 Aligned_cols=212 Identities=25% Similarity=0.353 Sum_probs=153.8
Q ss_pred HHhhhccccchHHHHHHHHHHHHhhccCC-------CCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchh
Q 004834 208 KERLDSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA 280 (728)
Q Consensus 208 ~~~L~~~i~G~~~vk~~i~~~l~~~~~~~-------~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s 280 (728)
.+.-..++.|++.+++.+.+.+..+..++ -.++.++||+||||||||++|+++|+.++.+|+.+..+...
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~--- 216 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV--- 216 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH---
Confidence 34445689999999999999887654432 24567899999999999999999999999999988654322
Q ss_pred hhccCccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCC-----CC--HHHHHHHhcCcccccccccCCCCeee
Q 004834 281 DIRGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVR-----GD--PASALLEVLDPEQNKTFNDHYLNVPF 352 (728)
Q Consensus 281 ~l~g~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~-----~~--~~~~Ll~~Ld~~~~~~~~d~~~~~~~ 352 (728)
..|+|..+..+.+.|..+....| |+||||+|.+...+. .+ .+..+.+++... ..+.
T Consensus 217 ------~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~l--d~~~-------- 280 (398)
T PTZ00454 217 ------QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQM--DGFD-------- 280 (398)
T ss_pred ------HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHh--hccC--------
Confidence 25778777777777777655444 999999999875431 11 123344443311 0111
Q ss_pred cCCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHccc
Q 004834 353 DLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 429 (728)
Q Consensus 353 d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~ 429 (728)
...+++||+|||.++.+||++++ ||+ .|+|+.|+.+++..|++.++. ..++. ..+ .+..++....+
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~-----~~~l~---~dv---d~~~la~~t~g 349 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS-----KMNLS---EEV---DLEDFVSRPEK 349 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh-----cCCCC---ccc---CHHHHHHHcCC
Confidence 12367899999999999999997 997 699999999999999998753 22221 112 24556665555
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 430 EAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 430 ~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
..| ++|.++|+.|++.++++
T Consensus 350 ~sg-----aDI~~l~~eA~~~A~r~ 369 (398)
T PTZ00454 350 ISA-----ADIAAICQEAGMQAVRK 369 (398)
T ss_pred CCH-----HHHHHHHHHHHHHHHHc
Confidence 566 88999999999998876
No 40
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.1e-21 Score=191.67 Aligned_cols=215 Identities=25% Similarity=0.375 Sum_probs=166.3
Q ss_pred HHHHHhhhccccchHHHHHHHHHHHHhhccCCC-------CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCcc
Q 004834 205 KAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVK 277 (728)
Q Consensus 205 ~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~-------~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~ 277 (728)
....+.-.+-+.|++..++.|.+.+..+..+|. ..+.++||+||||||||.||+++|....+.|++++.++..
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 334444556788999999999999887665443 4567899999999999999999999999999999866533
Q ss_pred chhhhccCccccccCCcchHHHHHhhcCCCC-cEEEEecccccCCCC-----CCC--HHHHHHHhcCcccccccccCCCC
Q 004834 278 DEADIRGHRRTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDV-----RGD--PASALLEVLDPEQNKTFNDHYLN 349 (728)
Q Consensus 278 ~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~-~VlllDEidkl~~~~-----~~~--~~~~Ll~~Ld~~~~~~~~d~~~~ 349 (728)
.+|+|.....+.+.|-.+.... +++|+||||.+...+ .|| .+..+|++|. |.++|..
T Consensus 219 ---------qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlelln--qldgfea---- 283 (404)
T KOG0728|consen 219 ---------QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLN--QLDGFEA---- 283 (404)
T ss_pred ---------HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHH--hcccccc----
Confidence 2799988877888876665444 499999999998754 223 2667777775 3344433
Q ss_pred eeecCCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHH
Q 004834 350 VPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQR 426 (728)
Q Consensus 350 ~~~d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~ 426 (728)
..|+-+|++||+.+-++|+|++ |++ -|+||+|+.+.+.+|++.|-.+..+. .|+ -++.+++.
T Consensus 284 ----tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-rgi----------~l~kiaek 348 (404)
T KOG0728|consen 284 ----TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-RGI----------NLRKIAEK 348 (404)
T ss_pred ----ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-ccc----------CHHHHHHh
Confidence 3577899999999999999998 998 69999999999999999884332221 122 15677787
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 427 YTREAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 427 ~~~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
..+.+| +.+..+|.+|.+.++++
T Consensus 349 m~gasg-----aevk~vcteagm~alre 371 (404)
T KOG0728|consen 349 MPGASG-----AEVKGVCTEAGMYALRE 371 (404)
T ss_pred CCCCcc-----chhhhhhhhhhHHHHHH
Confidence 777788 78999999999999987
No 41
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.86 E-value=4.8e-21 Score=215.06 Aligned_cols=204 Identities=23% Similarity=0.228 Sum_probs=152.3
Q ss_pred ccccchHHHHHHHHHHHHh----hccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccc
Q 004834 213 SDHYGLVRVKQRIIEYLAV----RKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRT 288 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~----~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~ 288 (728)
.++.|++.+|+.+.+.... ....+-..+.++||+||||||||++|+++|+.++.++++++++...+ +
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~---------~ 298 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFG---------G 298 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcc---------c
Confidence 3689999999888764321 11122245678999999999999999999999999999999865433 6
Q ss_pred cccCCcchHHHHHhhcCCCC-cEEEEecccccCCCC--CCCH------HHHHHHhcCcccccccccCCCCeeecCCCcEE
Q 004834 289 YIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDV--RGDP------ASALLEVLDPEQNKTFNDHYLNVPFDLSKVIF 359 (728)
Q Consensus 289 yvG~~~g~l~~~~~~a~~~~-~VlllDEidkl~~~~--~~~~------~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~ 359 (728)
|+|..+..+.+.|..+.... +|+||||||++.... .++. .+.|+..|+.. .+++++
T Consensus 299 ~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~---------------~~~V~v 363 (489)
T CHL00195 299 IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK---------------KSPVFV 363 (489)
T ss_pred ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC---------------CCceEE
Confidence 88988888888888765444 499999999987642 1221 23445544421 246789
Q ss_pred EEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHH
Q 004834 360 VATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 436 (728)
Q Consensus 360 I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L 436 (728)
|+|||.++.+|+++++ ||+ +|+++.|+.++|.+|++.++.+. +. ...++..+..+++...+.+|
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~-----~~----~~~~~~dl~~La~~T~GfSG---- 430 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF-----RP----KSWKKYDIKKLSKLSNKFSG---- 430 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc-----CC----CcccccCHHHHHhhcCCCCH----
Confidence 9999999999999997 998 79999999999999999997421 10 11234446777777777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004834 437 ERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 437 ~~~I~~l~r~a~~~~~~~ 454 (728)
++|+++|+.|+..+..+
T Consensus 431 -AdI~~lv~eA~~~A~~~ 447 (489)
T CHL00195 431 -AEIEQSIIEAMYIAFYE 447 (489)
T ss_pred -HHHHHHHHHHHHHHHHc
Confidence 88999999988877654
No 42
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=9.3e-21 Score=216.19 Aligned_cols=208 Identities=26% Similarity=0.345 Sum_probs=166.1
Q ss_pred hhhccccchHHHHHHHHHHHHhhcc------CCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhc
Q 004834 210 RLDSDHYGLVRVKQRIIEYLAVRKL------KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIR 283 (728)
Q Consensus 210 ~L~~~i~G~~~vk~~i~~~l~~~~~------~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~ 283 (728)
+..+|+.|.+++|+.|.+++...+. ..-..+.++||+||||||||.|||++|.+.+.||+.++.+++.+
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE----- 382 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE----- 382 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH-----
Confidence 4567899999999999998875432 11245668999999999999999999999999999999888665
Q ss_pred cCccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCCC-----------CHHHHHHHhcCcccccccccCCCCee
Q 004834 284 GHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRG-----------DPASALLEVLDPEQNKTFNDHYLNVP 351 (728)
Q Consensus 284 g~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~~-----------~~~~~Ll~~Ld~~~~~~~~d~~~~~~ 351 (728)
.++|..+.++...|..+....| ++|+||||.+...+.| ...|.||--||. |.
T Consensus 383 ----~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg-----f~------- 446 (774)
T KOG0731|consen 383 ----MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG-----FE------- 446 (774)
T ss_pred ----HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC-----Cc-------
Confidence 5777778889999988876656 9999999999876521 114556666663 21
Q ss_pred ecCCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcc
Q 004834 352 FDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT 428 (728)
Q Consensus 352 ~d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~ 428 (728)
. ..+++|+++||+++.++++|++ ||+ .|.++.|+..+|.+|++.|+.+ ..+..++..+..++....
T Consensus 447 ~-~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~----------~~~~~e~~dl~~~a~~t~ 515 (774)
T KOG0731|consen 447 T-SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRK----------KKLDDEDVDLSKLASLTP 515 (774)
T ss_pred C-CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhc----------cCCCcchhhHHHHHhcCC
Confidence 1 2578999999999999999998 998 7999999999999999999632 123335555666777777
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 429 REAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 429 ~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
+..| ++|.++|.+|++.++++
T Consensus 516 gf~g-----adl~n~~neaa~~a~r~ 536 (774)
T KOG0731|consen 516 GFSG-----ADLANLCNEAALLAARK 536 (774)
T ss_pred CCcH-----HHHHhhhhHHHHHHHHh
Confidence 7888 89999999999999987
No 43
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.3e-21 Score=197.59 Aligned_cols=215 Identities=20% Similarity=0.254 Sum_probs=167.6
Q ss_pred ccccchHHHHHHHHHHHHhhccCC------CCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKP------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 286 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~------~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~ 286 (728)
.++.|++.+|+.+.+.+.++...| ..+-..+||+||||||||.||+++|...+..|+.++-+...+
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvS-------- 204 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS-------- 204 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHH--------
Confidence 468899999999999887654322 234568999999999999999999999999999888666544
Q ss_pred cccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCC
Q 004834 287 RTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR 365 (728)
Q Consensus 287 ~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~ 365 (728)
+|.|.++..+.+.|..+....| ||||||||.++..+.++...+-..+= ..|.-...|+..|..+++++++||.
T Consensus 205 -KWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIK-----TEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 205 -KWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIK-----TEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred -HHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHH-----HHHHHhhhccccCCCceEEEecCCC
Confidence 7899988777777777665544 99999999998876544322211110 1122222355567788999999999
Q ss_pred CCCCChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHH
Q 004834 366 AQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 366 ~~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
++.++.++++||+ .|++|-|....|..+++.|+- ...-.+++..+.+|.+...+.+| .+|.-++
T Consensus 279 Pw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG----------~tp~~LT~~d~~eL~~kTeGySG-----sDisivV 343 (439)
T KOG0739|consen 279 PWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLG----------DTPHVLTEQDFKELARKTEGYSG-----SDISIVV 343 (439)
T ss_pred chhHHHHHHHHhhcceeccCCcHHHhhhhheeccC----------CCccccchhhHHHHHhhcCCCCc-----CceEEEe
Confidence 9999999999998 799999999999999998852 23356788889999988888888 7888899
Q ss_pred HHHHHHHHHHhh
Q 004834 445 RAAAVKVAEQEQ 456 (728)
Q Consensus 445 r~a~~~~~~~~~ 456 (728)
|.+.+.-++..+
T Consensus 344 rDalmePvRkvq 355 (439)
T KOG0739|consen 344 RDALMEPVRKVQ 355 (439)
T ss_pred hhhhhhhHHHhh
Confidence 999999888743
No 44
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.2e-20 Score=213.37 Aligned_cols=206 Identities=25% Similarity=0.355 Sum_probs=163.4
Q ss_pred ccccchHHHHHHHHHHHHhhccCCC-------CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccC
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGH 285 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~-------~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~ 285 (728)
.++.|++.+++.+.+.+.....++. .++.++||+||||||||+||+++|..++.+|+.+..+++.+
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s------- 314 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS------- 314 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc-------
Confidence 4678899999999998877654433 45558999999999999999999999999999999876554
Q ss_pred ccccccCCcchHHHHHhhcCC-CCcEEEEecccccCCCCCCC-------HHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 286 RRTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVRGD-------PASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 286 ~~~yvG~~~g~l~~~~~~a~~-~~~VlllDEidkl~~~~~~~-------~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
+|+|..+..+.+.|..+.. ..+|+||||+|++.+.+..+ ..+.|+..||... +.+++
T Consensus 315 --k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e-------------~~~~v 379 (494)
T COG0464 315 --KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE-------------KAEGV 379 (494)
T ss_pred --cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC-------------ccCce
Confidence 7999999999999999884 44599999999998876432 3566777776321 24568
Q ss_pred EEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchH
Q 004834 358 IFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVR 434 (728)
Q Consensus 358 i~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R 434 (728)
++|+|||.++.+++++++ ||+ +|.++.|+.+++.+|++.++... . ....++-.+..+++...+..|
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~-----~----~~~~~~~~~~~l~~~t~~~sg-- 448 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK-----K----PPLAEDVDLEELAEITEGYSG-- 448 (494)
T ss_pred EEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc-----C----CcchhhhhHHHHHHHhcCCCH--
Confidence 899999999999999999 998 79999999999999999996311 0 011234445555554444556
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004834 435 NLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 435 ~L~~~I~~l~r~a~~~~~~~ 454 (728)
++|..+|++|++..+++
T Consensus 449 ---adi~~i~~ea~~~~~~~ 465 (494)
T COG0464 449 ---ADIAALVREAALEALRE 465 (494)
T ss_pred ---HHHHHHHHHHHHHHHHH
Confidence 89999999999999887
No 45
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.84 E-value=3.4e-20 Score=184.50 Aligned_cols=187 Identities=23% Similarity=0.333 Sum_probs=125.0
Q ss_pred hccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCcccccc
Q 004834 212 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIG 291 (728)
Q Consensus 212 ~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG 291 (728)
-++++||++++..+.-++...... ...-++++|+||||+||||||+.||+.++.++..++......
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r-~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k------------- 88 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKR-GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK------------- 88 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCT-TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S-------------
T ss_pred HHHccCcHHHHhhhHHHHHHHHhc-CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh-------------
Confidence 358999999999987776654321 245679999999999999999999999999998766433221
Q ss_pred CCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCC---CCeeecCCCcEEEEecCCCCC
Q 004834 292 SMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHY---LNVPFDLSKVIFVATANRAQP 368 (728)
Q Consensus 292 ~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~---~~~~~d~~~vi~I~TtN~~~~ 368 (728)
.+.+...+.... .+.|+|||||+++.+.. +..|+..|+........... -...+++.++.+|++|+....
T Consensus 89 --~~dl~~il~~l~-~~~ILFIDEIHRlnk~~----qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ 161 (233)
T PF05496_consen 89 --AGDLAAILTNLK-EGDILFIDEIHRLNKAQ----QEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGL 161 (233)
T ss_dssp --CHHHHHHHHT---TT-EEEECTCCC--HHH----HHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCC
T ss_pred --HHHHHHHHHhcC-CCcEEEEechhhccHHH----HHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccc
Confidence 234444444332 35699999999999877 89999999976543222211 125668888999999999999
Q ss_pred CChhhhCCeeE-EEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHccc
Q 004834 369 IPPPLLDRMEV-IELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 429 (728)
Q Consensus 369 l~~~Ll~R~~v-I~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~ 429 (728)
+++||++||-+ ..+..|+.++..+|+++.- ...++.+++++..+|+++..+
T Consensus 162 ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a----------~~l~i~i~~~~~~~Ia~rsrG 213 (233)
T PF05496_consen 162 LSSPLRDRFGIVLRLEFYSEEELAKIVKRSA----------RILNIEIDEDAAEEIARRSRG 213 (233)
T ss_dssp TSHCCCTTSSEEEE----THHHHHHHHHHCC----------HCTT-EE-HHHHHHHHHCTTT
T ss_pred cchhHHhhcceecchhcCCHHHHHHHHHHHH----------HHhCCCcCHHHHHHHHHhcCC
Confidence 99999999985 6899999999999998762 123588999999999986544
No 46
>CHL00181 cbbX CbbX; Provisional
Probab=99.84 E-value=3e-20 Score=196.56 Aligned_cols=218 Identities=25% Similarity=0.364 Sum_probs=156.9
Q ss_pred HhcHHHHHHhhhccccchHHHHHHHHHHHHhhc---------cCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC------
Q 004834 201 DLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRK---------LKPDARGPVLCFVGPPGVGKTSLASSIASALG------ 265 (728)
Q Consensus 201 ~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~---------~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~------ 265 (728)
..++..+...|+++++|++++|++|.+.+.... +.+..++.+++|+||||||||++|+++|+.+.
T Consensus 11 ~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~ 90 (287)
T CHL00181 11 KTQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIK 90 (287)
T ss_pred ccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 567889999999999999999999988765321 11223566899999999999999999999873
Q ss_pred -CCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecccccCCCC-----CCCHHHHHHHhcCccc
Q 004834 266 -RKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDV-----RGDPASALLEVLDPEQ 339 (728)
Q Consensus 266 -~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~-----~~~~~~~Ll~~Ld~~~ 339 (728)
.+++.++.+ ++.+ .|+|.......+.+..+. ++|+||||++.+.+.. ..+.++.|++.|+..
T Consensus 91 ~~~~~~v~~~------~l~~---~~~g~~~~~~~~~l~~a~--ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~- 158 (287)
T CHL00181 91 KGHLLTVTRD------DLVG---QYIGHTAPKTKEVLKKAM--GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ- 158 (287)
T ss_pred CCceEEecHH------HHHH---HHhccchHHHHHHHHHcc--CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC-
Confidence 134444422 2222 467766666666676653 4799999999985421 223467888888742
Q ss_pred ccccccCCCCeeecCCCcEEEEecCCCC-----CCChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCcccc
Q 004834 340 NKTFNDHYLNVPFDLSKVIFVATANRAQ-----PIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFL 413 (728)
Q Consensus 340 ~~~~~d~~~~~~~d~~~vi~I~TtN~~~-----~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~ 413 (728)
..++++|++++... .++|+|++||. +|.|++|+.+++.+|+..++... ..
T Consensus 159 --------------~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~----------~~ 214 (287)
T CHL00181 159 --------------RDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ----------QY 214 (287)
T ss_pred --------------CCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh----------cC
Confidence 13467777776432 45799999997 79999999999999999986421 24
Q ss_pred ccCHHHHHHHHHHc-----ccccc-hHHHHHHHHHHHHHHHHHHHHH
Q 004834 414 QIPEAMVKLVIQRY-----TREAG-VRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 414 ~i~d~~l~~l~~~~-----~~~~G-~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
.+++++...+.+.+ ....| +|.+++.+++.+.+.+.+++..
T Consensus 215 ~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 215 QLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFES 261 (287)
T ss_pred CCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 56666665555422 22344 9999999999999888888765
No 47
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.84 E-value=3e-20 Score=221.29 Aligned_cols=205 Identities=25% Similarity=0.358 Sum_probs=160.7
Q ss_pred hhccccchHHHHHHHHHHHHhhccCC-------CCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhc
Q 004834 211 LDSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIR 283 (728)
Q Consensus 211 L~~~i~G~~~vk~~i~~~l~~~~~~~-------~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~ 283 (728)
-..++.|++.+++.+.+.+..+..++ ..++.++||+||||||||++|+++|..++.+|+.+..++..+
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~----- 525 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS----- 525 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh-----
Confidence 34578999999999999887643321 244568999999999999999999999999999988765433
Q ss_pred cCccccccCCcchHHHHHhhcCCCC-cEEEEecccccCCCCCCC--------HHHHHHHhcCcccccccccCCCCeeecC
Q 004834 284 GHRRTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVRGD--------PASALLEVLDPEQNKTFNDHYLNVPFDL 354 (728)
Q Consensus 284 g~~~~yvG~~~g~l~~~~~~a~~~~-~VlllDEidkl~~~~~~~--------~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~ 354 (728)
.|+|..+..+.+.|..+.... .|+||||||.+.+.+.++ ..+.|+..||... +.
T Consensus 526 ----~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~-------------~~ 588 (733)
T TIGR01243 526 ----KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ-------------EL 588 (733)
T ss_pred ----cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhccc-------------CC
Confidence 689999888888888776554 499999999998765321 2456777776421 23
Q ss_pred CCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCcccccc-CHHHHHHHHHHcccc
Q 004834 355 SKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQI-PEAMVKLVIQRYTRE 430 (728)
Q Consensus 355 ~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i-~d~~l~~l~~~~~~~ 430 (728)
+++++|+|||.++.+++++++ ||+ +|+++.|+.++|.+|++.++.. ..+ ++..+..+++...+.
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~------------~~~~~~~~l~~la~~t~g~ 656 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS------------MPLAEDVDLEELAEMTEGY 656 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC------------CCCCccCCHHHHHHHcCCC
Confidence 578999999999999999997 998 7999999999999999877421 112 222366677766667
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q 004834 431 AGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 431 ~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
+| ++|..+|+.|++.++++
T Consensus 657 sg-----adi~~~~~~A~~~a~~~ 675 (733)
T TIGR01243 657 TG-----ADIEAVCREAAMAALRE 675 (733)
T ss_pred CH-----HHHHHHHHHHHHHHHHH
Confidence 77 89999999999998886
No 48
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.84 E-value=6.9e-20 Score=198.02 Aligned_cols=243 Identities=21% Similarity=0.317 Sum_probs=171.4
Q ss_pred hcHHHHHHhhhccccchHHHHHHHHHHHHhhc----cC----CCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEec
Q 004834 202 LDLKAAKERLDSDHYGLVRVKQRIIEYLAVRK----LK----PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 273 (728)
Q Consensus 202 ~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~----~~----~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~ 273 (728)
+....+...|++.++||+++++.+..++..+. +. ....+.+++|+||||||||++|+++|+.++.+|+.+++
T Consensus 4 ~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 4 LTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 34567788899999999999999998886531 11 11235689999999999999999999999999999987
Q ss_pred CCccchh-------------------------------------------hhccCc------------------------
Q 004834 274 GGVKDEA-------------------------------------------DIRGHR------------------------ 286 (728)
Q Consensus 274 ~~~~~~s-------------------------------------------~l~g~~------------------------ 286 (728)
+.+.... .+.+..
T Consensus 84 t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l 163 (443)
T PRK05201 84 TKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKL 163 (443)
T ss_pred hhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHH
Confidence 6443210 000000
Q ss_pred ---------------c-cc-cc--CCcc------hH-----------------------------------------HHH
Q 004834 287 ---------------R-TY-IG--SMPG------RL-----------------------------------------IDG 300 (728)
Q Consensus 287 ---------------~-~y-vG--~~~g------~l-----------------------------------------~~~ 300 (728)
. .. .+ ..+| .+ .++
T Consensus 164 ~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~a 243 (443)
T PRK05201 164 REGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEA 243 (443)
T ss_pred HcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 0 00 00 0000 00 111
Q ss_pred HhhcCCCCcEEEEecccccCCCCC--------CCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEec----CCCCC
Q 004834 301 LKRVGVCNPVMLLDEIDKTGSDVR--------GDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA----NRAQP 368 (728)
Q Consensus 301 ~~~a~~~~~VlllDEidkl~~~~~--------~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~Tt----N~~~~ 368 (728)
+..+ ..++|+|||||||+..... ...|..||.+++...... .+ .++|.++++|||+. ..++.
T Consensus 244 i~~a-e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~---k~--~~i~T~~ILFI~~GAF~~~kp~D 317 (443)
T PRK05201 244 IERV-EQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVST---KY--GMVKTDHILFIASGAFHVSKPSD 317 (443)
T ss_pred HHHH-HcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeee---cc--eeEECCceeEEecCCcCCCChhh
Confidence 2222 1457999999999986431 124889999999754332 22 57899999999953 34567
Q ss_pred CChhhhCCee-EEEcCCCCHHHHHHHHH---HhhchHHHhhcCCCccccccCHHHHHHHHHHcc------cccchHHHHH
Q 004834 369 IPPPLLDRME-VIELPGYTPEEKLRIAM---RHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT------REAGVRNLER 438 (728)
Q Consensus 369 l~~~Ll~R~~-vI~~~~~t~ee~~~Il~---~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~------~~~G~R~L~~ 438 (728)
+-|+|..||. ++.+.+++.++..+|+. ..|.+++..-.......+.+++++++++++... .+.|+|.|+.
T Consensus 318 lIPEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~Lrt 397 (443)
T PRK05201 318 LIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHT 397 (443)
T ss_pred ccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHH
Confidence 8899999998 69999999999999994 345555555454555679999999999998433 5899999999
Q ss_pred HHHHHHHHHHHH
Q 004834 439 NLAALARAAAVK 450 (728)
Q Consensus 439 ~I~~l~r~a~~~ 450 (728)
.+++++..+.+.
T Consensus 398 I~E~~L~d~~Fe 409 (443)
T PRK05201 398 VMEKLLEDISFE 409 (443)
T ss_pred HHHHHHHHHhcc
Confidence 999999765543
No 49
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=6e-21 Score=192.20 Aligned_cols=216 Identities=23% Similarity=0.370 Sum_probs=167.4
Q ss_pred cHHHHHHhhhccccchHHHHHHHHHHHHhhccCCC-------CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 203 DLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 203 ~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~-------~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+..+...-..++.|++..++.|.+.+..+.-+|. .++.+++|||+||||||.||+++|+.....|.++..++
T Consensus 175 K~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGse 254 (440)
T KOG0726|consen 175 KVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSE 254 (440)
T ss_pred ecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHH
Confidence 34455666677999999999999999987765543 56678999999999999999999999999999887655
Q ss_pred ccchhhhccCccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCCC-------CHHHHHHHhcCcccccccccCC
Q 004834 276 VKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRG-------DPASALLEVLDPEQNKTFNDHY 347 (728)
Q Consensus 276 ~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~~-------~~~~~Ll~~Ld~~~~~~~~d~~ 347 (728)
.. ..|.|..+..+.+.|+-+....| |+||||||.+..++-. ..+..+|++|. |..+|-+
T Consensus 255 Li---------QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLN--QldGFds-- 321 (440)
T KOG0726|consen 255 LI---------QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLN--QLDGFDS-- 321 (440)
T ss_pred HH---------HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHH--hccCccc--
Confidence 32 27999999999999988865544 9999999999876521 23677777775 3344433
Q ss_pred CCeeecCCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHH-HHHH
Q 004834 348 LNVPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAM-VKLV 423 (728)
Q Consensus 348 ~~~~~d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~-l~~l 423 (728)
...+-+|++||..+.++|+|++ |++ -|+|+.|+...+.+|+..|-.. .++++++ ++.+
T Consensus 322 ------rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~------------Mtl~~dVnle~l 383 (440)
T KOG0726|consen 322 ------RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSR------------MTLAEDVNLEEL 383 (440)
T ss_pred ------cCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecc------------cchhccccHHHH
Confidence 2356799999999999999998 998 6999999999999999887432 2333222 4445
Q ss_pred HHHcccccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 424 IQRYTREAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 424 ~~~~~~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
+..-..-+| ++|..+|.+|.+-++++
T Consensus 384 i~~kddlSG-----AdIkAictEaGllAlRe 409 (440)
T KOG0726|consen 384 IMTKDDLSG-----ADIKAICTEAGLLALRE 409 (440)
T ss_pred hhccccccc-----ccHHHHHHHHhHHHHHH
Confidence 543334566 79999999999999987
No 50
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.8e-20 Score=195.98 Aligned_cols=212 Identities=21% Similarity=0.305 Sum_probs=154.7
Q ss_pred cccchHHHHHHHHHHHHhhccCCC--------CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccC
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPD--------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGH 285 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~--------~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~ 285 (728)
++.|++.+++.+.+.+..+..+++ .+..++||+||||||||.+|+++|+..+.+|+.+.+++..+
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~------- 165 (386)
T KOG0737|consen 93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS------- 165 (386)
T ss_pred hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch-------
Confidence 689999999999998876654332 45668999999999999999999999999999999998776
Q ss_pred ccccccCCcchHHHHHhhcCCCC-cEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCC-CcEEEEec
Q 004834 286 RRTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS-KVIFVATA 363 (728)
Q Consensus 286 ~~~yvG~~~g~l~~~~~~a~~~~-~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~-~vi~I~Tt 363 (728)
+|.|.....+...|.-+.... .++||||+|.+...++.....+...+ . ..|..+..|..-+-+ .++++++|
T Consensus 166 --KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~m-K----~eFM~~WDGl~s~~~~rVlVlgAT 238 (386)
T KOG0737|consen 166 --KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMM-K----NEFMALWDGLSSKDSERVLVLGAT 238 (386)
T ss_pred --hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHH-H----HHHHHHhccccCCCCceEEEEeCC
Confidence 566776655555555554333 49999999998765532222221111 0 112222223332223 57899999
Q ss_pred CCCCCCChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHH
Q 004834 364 NRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAA 442 (728)
Q Consensus 364 N~~~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~ 442 (728)
|+|..++.++++||. .++++-|+.++|.+|++-.|.+..++ -.++ +..++....+.+| ++|..
T Consensus 239 NRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e--------~~vD---~~~iA~~t~GySG-----SDLke 302 (386)
T KOG0737|consen 239 NRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE--------DDVD---LDEIAQMTEGYSG-----SDLKE 302 (386)
T ss_pred CCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC--------cccC---HHHHHHhcCCCcH-----HHHHH
Confidence 999999999999996 89999999999999999987543222 1233 3445555555566 99999
Q ss_pred HHHHHHHHHHHHh
Q 004834 443 LARAAAVKVAEQE 455 (728)
Q Consensus 443 l~r~a~~~~~~~~ 455 (728)
+||.|++..+++.
T Consensus 303 lC~~Aa~~~ire~ 315 (386)
T KOG0737|consen 303 LCRLAALRPIREL 315 (386)
T ss_pred HHHHHhHhHHHHH
Confidence 9999999998874
No 51
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5.3e-20 Score=203.83 Aligned_cols=205 Identities=26% Similarity=0.362 Sum_probs=166.2
Q ss_pred ccccchHHHHHHHHHHHHhhccCCC-------CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccC
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGH 285 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~-------~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~ 285 (728)
.++.|+.++++.+.+.+.++..++. +-..++||+||||||||.||-++|...+..|+.+...+..+
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~------- 739 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS------- 739 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH-------
Confidence 4789999999999999988755432 34558999999999999999999999999898887655444
Q ss_pred ccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCCCCH-------HHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 286 RRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRGDP-------ASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 286 ~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~~~~-------~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
+|+|+.+..++..|.+|....| |+|+||+|.+.|++..|. .|.||.-||+... +.++
T Consensus 740 --KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg-------------l~GV 804 (952)
T KOG0735|consen 740 --KYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEG-------------LDGV 804 (952)
T ss_pred --HHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccc-------------cceE
Confidence 7999999999999999887666 999999999999875443 6889999985431 5678
Q ss_pred EEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchH
Q 004834 358 IFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVR 434 (728)
Q Consensus 358 i~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R 434 (728)
.++++|.+++.+||+|++ |++ .+..+.|++.+|.+|++..-. ....-++..++.++....+..|
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~-----------s~~~~~~vdl~~~a~~T~g~tg-- 871 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSN-----------SLLKDTDVDLECLAQKTDGFTG-- 871 (952)
T ss_pred EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhh-----------ccCCccccchHHHhhhcCCCch--
Confidence 999999999999999998 998 799999999999999976421 1122345557777776667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 004834 435 NLERNLAALARAAAVKVAEQE 455 (728)
Q Consensus 435 ~L~~~I~~l~r~a~~~~~~~~ 455 (728)
++++.++..|.+.++.+.
T Consensus 872 ---ADlq~ll~~A~l~avh~~ 889 (952)
T KOG0735|consen 872 ---ADLQSLLYNAQLAAVHEI 889 (952)
T ss_pred ---hhHHHHHHHHHHHHHHHH
Confidence 788888888888777663
No 52
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.83 E-value=4.7e-20 Score=204.15 Aligned_cols=209 Identities=24% Similarity=0.360 Sum_probs=151.1
Q ss_pred hhccccchHHHHHHHHHHHHhhccCC-------CCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhc
Q 004834 211 LDSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIR 283 (728)
Q Consensus 211 L~~~i~G~~~vk~~i~~~l~~~~~~~-------~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~ 283 (728)
-..++.|++..++.+.+++..+..++ -.++.++||+||||||||++|+++|+.++.+|+++..+....
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~----- 255 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ----- 255 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh-----
Confidence 34578999999999999887654332 245668999999999999999999999999999887654322
Q ss_pred cCccccccCCcchHHHHHhhcCCCC-cEEEEecccccCCCCC-----CC--HHHHHHHhcCcccccccccCCCCeeecCC
Q 004834 284 GHRRTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVR-----GD--PASALLEVLDPEQNKTFNDHYLNVPFDLS 355 (728)
Q Consensus 284 g~~~~yvG~~~g~l~~~~~~a~~~~-~VlllDEidkl~~~~~-----~~--~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~ 355 (728)
.|+|..+..+...|..+.... .|+||||||.+..++. ++ .+..++++|... .+|. ...
T Consensus 256 ----k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~L--dg~~--------~~~ 321 (438)
T PTZ00361 256 ----KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQL--DGFD--------SRG 321 (438)
T ss_pred ----hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHH--hhhc--------ccC
Confidence 577777766777776665444 4999999999976431 11 134444444311 1111 123
Q ss_pred CcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccc
Q 004834 356 KVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAG 432 (728)
Q Consensus 356 ~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G 432 (728)
++.||+|||.++.+++++++ ||+ .|+|+.|+.+++.+|++.++.+ ..+. ++..+..++....+..|
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k-----~~l~------~dvdl~~la~~t~g~sg 390 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK-----MTLA------EDVDLEEFIMAKDELSG 390 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc-----CCCC------cCcCHHHHHHhcCCCCH
Confidence 67899999999999999986 998 7999999999999999987531 1111 11234555555555566
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 004834 433 VRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 433 ~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
++|..+|+.|++.++++
T Consensus 391 -----AdI~~i~~eA~~~Alr~ 407 (438)
T PTZ00361 391 -----ADIKAICTEAGLLALRE 407 (438)
T ss_pred -----HHHHHHHHHHHHHHHHh
Confidence 78999999999998876
No 53
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.82 E-value=2.3e-19 Score=193.89 Aligned_cols=240 Identities=21% Similarity=0.308 Sum_probs=169.3
Q ss_pred HHHHHhhhccccchHHHHHHHHHHHHhhcc--------CCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc
Q 004834 205 KAAKERLDSDHYGLVRVKQRIIEYLAVRKL--------KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 276 (728)
Q Consensus 205 ~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~--------~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~ 276 (728)
.++...|++.++||+++++.+..++..... ....++.+++|+||||||||++|+++|+.++.+|+.++.+.+
T Consensus 4 ~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 4 REIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 456678899999999999999888775421 112245689999999999999999999999999999986533
Q ss_pred cc-------hhh------------------------------------hccCcccccc----------------------
Q 004834 277 KD-------EAD------------------------------------IRGHRRTYIG---------------------- 291 (728)
Q Consensus 277 ~~-------~s~------------------------------------l~g~~~~yvG---------------------- 291 (728)
.. ... +........|
T Consensus 84 ~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g 163 (441)
T TIGR00390 84 TEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREG 163 (441)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcC
Confidence 21 100 0000000000
Q ss_pred --------------------C--Ccc------hH-----------------------------------------HHHHh
Q 004834 292 --------------------S--MPG------RL-----------------------------------------IDGLK 302 (728)
Q Consensus 292 --------------------~--~~g------~l-----------------------------------------~~~~~ 302 (728)
. .+| .+ .+++.
T Consensus 164 ~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~ 243 (441)
T TIGR00390 164 ELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAID 243 (441)
T ss_pred CccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 0 000 00 01111
Q ss_pred hcCCCCcEEEEecccccCCCC-------CC-CHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEec----CCCCCCC
Q 004834 303 RVGVCNPVMLLDEIDKTGSDV-------RG-DPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA----NRAQPIP 370 (728)
Q Consensus 303 ~a~~~~~VlllDEidkl~~~~-------~~-~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~Tt----N~~~~l~ 370 (728)
.+ ...+|+|||||||+.... .+ ..|..||.++++..... .+ .++|..+++|||+. ..++.+-
T Consensus 244 ~~-e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~---k~--~~v~T~~ILFI~~GAF~~~kp~DlI 317 (441)
T TIGR00390 244 AV-EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT---KY--GMVKTDHILFIAAGAFQLAKPSDLI 317 (441)
T ss_pred HH-HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee---cc--eeEECCceeEEecCCcCCCChhhcc
Confidence 11 245799999999998643 11 24899999999754332 22 47899999999954 2456789
Q ss_pred hhhhCCee-EEEcCCCCHHHHHHHHH---HhhchHHHhhcCCCccccccCHHHHHHHHHHcc------cccchHHHHHHH
Q 004834 371 PPLLDRME-VIELPGYTPEEKLRIAM---RHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT------REAGVRNLERNL 440 (728)
Q Consensus 371 ~~Ll~R~~-vI~~~~~t~ee~~~Il~---~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~------~~~G~R~L~~~I 440 (728)
|+|..||. ++.+.+++.++..+|+. +.|.+++..-.......+.++++++.+|++... .+.|+|.|+..+
T Consensus 318 PEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~Lrtil 397 (441)
T TIGR00390 318 PELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVL 397 (441)
T ss_pred HHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHH
Confidence 99999998 69999999999999993 346555555555555679999999999998433 589999999999
Q ss_pred HHHHHHHHHH
Q 004834 441 AALARAAAVK 450 (728)
Q Consensus 441 ~~l~r~a~~~ 450 (728)
++++..+.+.
T Consensus 398 E~~l~d~~fe 407 (441)
T TIGR00390 398 ERLLEDISFE 407 (441)
T ss_pred HHHHHHHHhc
Confidence 9999766554
No 54
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.82 E-value=1.5e-19 Score=206.21 Aligned_cols=204 Identities=26% Similarity=0.349 Sum_probs=150.0
Q ss_pred ccccchHHHHHHHHHHHHhhcc------CCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKL------KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 286 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~------~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~ 286 (728)
++++|++++++.+.+.+..... .....+.++||+||||||||++|+++|..++.+++.++.+...+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~-------- 126 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE-------- 126 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH--------
Confidence 3789999999988877653211 12244568999999999999999999999999999887655332
Q ss_pred cccccCCcchHHHHHhhcCCC-CcEEEEecccccCCCCCC----------CHHHHHHHhcCcccccccccCCCCeeecCC
Q 004834 287 RTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRG----------DPASALLEVLDPEQNKTFNDHYLNVPFDLS 355 (728)
Q Consensus 287 ~~yvG~~~g~l~~~~~~a~~~-~~VlllDEidkl~~~~~~----------~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~ 355 (728)
.|+|.....+...|..+... ++||||||||.+.++... ...+.|+..||.. . +..
T Consensus 127 -~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~-----~--------~~~ 192 (495)
T TIGR01241 127 -MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF-----G--------TNT 192 (495)
T ss_pred -HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc-----c--------CCC
Confidence 45666666777777776543 359999999999765421 1234566666531 1 124
Q ss_pred CcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccc
Q 004834 356 KVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAG 432 (728)
Q Consensus 356 ~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G 432 (728)
+++||+|||.++.++|+|++ ||+ .|.++.|+.++|.+|++.++.. .. +. ++..+..+++...+..|
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~-----~~-----~~-~~~~l~~la~~t~G~sg 261 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKN-----KK-----LA-PDVDLKAVARRTPGFSG 261 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhc-----CC-----CC-cchhHHHHHHhCCCCCH
Confidence 57999999999999999997 897 7999999999999999988631 11 11 23446677776666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 004834 433 VRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 433 ~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
++|.++|++|+..+.+.
T Consensus 262 -----adl~~l~~eA~~~a~~~ 278 (495)
T TIGR01241 262 -----ADLANLLNEAALLAARK 278 (495)
T ss_pred -----HHHHHHHHHHHHHHHHc
Confidence 78999999988877664
No 55
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.81 E-value=5.6e-19 Score=186.98 Aligned_cols=218 Identities=22% Similarity=0.319 Sum_probs=157.9
Q ss_pred HhcHHHHHHhhhccccchHHHHHHHHHHHHhhc---------cCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCC-----
Q 004834 201 DLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRK---------LKPDARGPVLCFVGPPGVGKTSLASSIASALGR----- 266 (728)
Q Consensus 201 ~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~---------~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~----- 266 (728)
...+.+..+.|++.++|++++|+.|.+...... +....++.+++|+||||||||++|+++|+.+..
T Consensus 10 ~~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~ 89 (284)
T TIGR02880 10 ASGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVR 89 (284)
T ss_pred hccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcc
Confidence 455777788888889999999999988665421 111234558999999999999999999998832
Q ss_pred --CeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecccccCCCCC-----CCHHHHHHHhcCccc
Q 004834 267 --KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVR-----GDPASALLEVLDPEQ 339 (728)
Q Consensus 267 --~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~-----~~~~~~Ll~~Ld~~~ 339 (728)
+++.++.. ++.+ .|+|.....+.+.+..+. ++||||||++.+.+... .+.++.|++.|+...
T Consensus 90 ~~~~v~v~~~------~l~~---~~~g~~~~~~~~~~~~a~--~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~ 158 (284)
T TIGR02880 90 KGHLVSVTRD------DLVG---QYIGHTAPKTKEILKRAM--GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR 158 (284)
T ss_pred cceEEEecHH------HHhH---hhcccchHHHHHHHHHcc--CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC
Confidence 45555532 2322 466766666666777653 47999999999854321 123678888887421
Q ss_pred ccccccCCCCeeecCCCcEEEEecCCC--C---CCChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCcccc
Q 004834 340 NKTFNDHYLNVPFDLSKVIFVATANRA--Q---PIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFL 413 (728)
Q Consensus 340 ~~~~~d~~~~~~~d~~~vi~I~TtN~~--~---~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~ 413 (728)
.++++|++++.. + .++|+|++||. .|.|++|+.+++..|++.++.+ . ..
T Consensus 159 ---------------~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~-----~-----~~ 213 (284)
T TIGR02880 159 ---------------DDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE-----Q-----QY 213 (284)
T ss_pred ---------------CCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH-----h-----cc
Confidence 345777776543 2 45899999997 7999999999999999998642 1 24
Q ss_pred ccCHHHHHHHHHHc------ccccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 414 QIPEAMVKLVIQRY------TREAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 414 ~i~d~~l~~l~~~~------~~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
.++++++..+.+.. .+..++|.|++.+++.+.+.+.++...
T Consensus 214 ~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~~~~ 260 (284)
T TIGR02880 214 RFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQANRLFCD 260 (284)
T ss_pred ccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 57788887776531 445669999999999998888887755
No 56
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.6e-19 Score=181.10 Aligned_cols=240 Identities=19% Similarity=0.282 Sum_probs=177.4
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHh-----hccCC----CCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecC
Q 004834 204 LKAAKERLDSDHYGLVRVKQRIIEYLAV-----RKLKP----DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLG 274 (728)
Q Consensus 204 l~~~~~~L~~~i~G~~~vk~~i~~~l~~-----~~~~~----~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~ 274 (728)
..+++..|++.++||+.+|+.+.-++.. ..... .-...++||+||+|+|||.||+.+|+.++.||..-+.+
T Consensus 52 P~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADAT 131 (408)
T COG1219 52 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADAT 131 (408)
T ss_pred hHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeecccc
Confidence 4566788999999999999876543322 11111 02345899999999999999999999999999988877
Q ss_pred CccchhhhccCccccccCCcchHHHHHhh-cCC-----CCcEEEEecccccCCCC---------CC-CHHHHHHHhcCcc
Q 004834 275 GVKDEADIRGHRRTYIGSMPGRLIDGLKR-VGV-----CNPVMLLDEIDKTGSDV---------RG-DPASALLEVLDPE 338 (728)
Q Consensus 275 ~~~~~s~l~g~~~~yvG~~~g~l~~~~~~-a~~-----~~~VlllDEidkl~~~~---------~~-~~~~~Ll~~Ld~~ 338 (728)
..+. .+|||..-.++...+-. +.+ ..++++||||||++... .| ..+.+||.+++..
T Consensus 132 tLTE--------AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 132 TLTE--------AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred chhh--------ccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 6554 38999876655444333 322 34599999999997653 22 2389999999853
Q ss_pred cc------cccccCCCCeeecCCCcEEEEecCCC--------------------------------------------CC
Q 004834 339 QN------KTFNDHYLNVPFDLSKVIFVATANRA--------------------------------------------QP 368 (728)
Q Consensus 339 ~~------~~~~d~~~~~~~d~~~vi~I~TtN~~--------------------------------------------~~ 368 (728)
.. .+-..+..=+.+|.+|++|||..--. ..
T Consensus 204 vasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFG 283 (408)
T COG1219 204 VASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFG 283 (408)
T ss_pred eeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcC
Confidence 22 11122222346799999999843211 16
Q ss_pred CChhhhCCee-EEEcCCCCHHHHHHHHH---HhhchHHHhhcCCCccccccCHHHHHHHHH-HcccccchHHHHHHHHHH
Q 004834 369 IPPPLLDRME-VIELPGYTPEEKLRIAM---RHLIPRVLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAAL 443 (728)
Q Consensus 369 l~~~Ll~R~~-vI~~~~~t~ee~~~Il~---~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~-~~~~~~G~R~L~~~I~~l 443 (728)
+-|+|..|+. +..+..++.+++.+|+. +.+.+++..-..+....+.++++++..+++ ...+..|+|.|+..++.+
T Consensus 284 LIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~ 363 (408)
T COG1219 284 LIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEEL 363 (408)
T ss_pred CcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 7899999998 68899999999999985 456666666677778889999999999998 566799999999999999
Q ss_pred HHHHHHHH
Q 004834 444 ARAAAVKV 451 (728)
Q Consensus 444 ~r~a~~~~ 451 (728)
+....+++
T Consensus 364 lld~Mfel 371 (408)
T COG1219 364 LLDVMFEL 371 (408)
T ss_pred HHHHHhhC
Confidence 97666544
No 57
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.81 E-value=8.9e-19 Score=183.74 Aligned_cols=205 Identities=22% Similarity=0.336 Sum_probs=147.5
Q ss_pred cccchHHHHHHHHHHHHhhcc---------CCCCCCCEEEEEcCCCCChhHHHHHHHHHhCC-------CeEEEecCCcc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKL---------KPDARGPVLCFVGPPGVGKTSLASSIASALGR-------KFIRISLGGVK 277 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~---------~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~-------~~~~i~~~~~~ 277 (728)
+++|++++|++|.++..+... ...+...+++|+||||||||++|+++|+.+.. +++.+++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 589999999999887655321 22234568999999999999999999998621 2333322
Q ss_pred chhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecccccCCCCC----CCHHHHHHHhcCcccccccccCCCCeeec
Q 004834 278 DEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVR----GDPASALLEVLDPEQNKTFNDHYLNVPFD 353 (728)
Q Consensus 278 ~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~----~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d 353 (728)
+++.+ .|+|.....+.+.+..+. +.||||||+|.+.++.. .+.++.|++.|+...
T Consensus 83 --~~l~~---~~~g~~~~~~~~~~~~a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-------------- 141 (261)
T TIGR02881 83 --ADLVG---EYIGHTAQKTREVIKKAL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-------------- 141 (261)
T ss_pred --HHhhh---hhccchHHHHHHHHHhcc--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccC--------------
Confidence 23333 577777777777787764 46999999999975321 123577777776421
Q ss_pred CCCcEEEEecCCC-----CCCChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHc
Q 004834 354 LSKVIFVATANRA-----QPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRY 427 (728)
Q Consensus 354 ~~~vi~I~TtN~~-----~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~ 427 (728)
.++++|++++.. ..++|+|++||. .|.|++|+.+++.+|+++++. . ..+.++++++.++.+.+
T Consensus 142 -~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~-----~-----~~~~l~~~a~~~l~~~~ 210 (261)
T TIGR02881 142 -NEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK-----E-----REYKLTEEAKWKLREHL 210 (261)
T ss_pred -CCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH-----H-----cCCccCHHHHHHHHHHH
Confidence 234566665433 247899999996 699999999999999998752 1 23578999998886632
Q ss_pred c--------cccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 428 T--------REAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 428 ~--------~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
. ...++|.+++.++..+++.+.+++..
T Consensus 211 ~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~ 245 (261)
T TIGR02881 211 YKVDQLSSREFSNARYVRNIIEKAIRRQAVRLLDK 245 (261)
T ss_pred HHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 14678999999999999988887765
No 58
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=8.1e-20 Score=181.46 Aligned_cols=209 Identities=23% Similarity=0.353 Sum_probs=157.9
Q ss_pred hhhccccchHHHHHHHHHHHHhhccCC-------CCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhh
Q 004834 210 RLDSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADI 282 (728)
Q Consensus 210 ~L~~~i~G~~~vk~~i~~~l~~~~~~~-------~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l 282 (728)
.-..++.|+++.++.+.+++..+..++ -.++.++|+|||||||||.+|++.|...+..|..+......
T Consensus 168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV----- 242 (424)
T KOG0652|consen 168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV----- 242 (424)
T ss_pred ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH-----
Confidence 345689999999999999887654322 25667899999999999999999999988877765433221
Q ss_pred ccCccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCC-----CCC--HHHHHHHhcCcccccccccCCCCeeecC
Q 004834 283 RGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDV-----RGD--PASALLEVLDPEQNKTFNDHYLNVPFDL 354 (728)
Q Consensus 283 ~g~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~-----~~~--~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~ 354 (728)
..|+|.....+..+|..+....| |+||||+|.+..++ .|| .+..+|++|. |..+|...
T Consensus 243 ----QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLN--QLDGFss~-------- 308 (424)
T KOG0652|consen 243 ----QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLN--QLDGFSSD-------- 308 (424)
T ss_pred ----hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHH--hhcCCCCc--------
Confidence 26888888888899988876666 99999999998765 233 2667777775 33445432
Q ss_pred CCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCH-HHHHHHHHHcccc
Q 004834 355 SKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPE-AMVKLVIQRYTRE 430 (728)
Q Consensus 355 ~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d-~~l~~l~~~~~~~ 430 (728)
..+-+|++||+.+-++|+|++ |++ -|+||-|+++.|.+|++.|-. ....++ --.+.+++.....
T Consensus 309 ~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsR------------KMnv~~DvNfeELaRsTddF 376 (424)
T KOG0652|consen 309 DRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSR------------KMNVSDDVNFEELARSTDDF 376 (424)
T ss_pred cceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhh------------hcCCCCCCCHHHHhhccccc
Confidence 246789999999999999997 888 699999999999999998832 122222 2255676655566
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q 004834 431 AGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 431 ~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
.| +....+|-+|.+-+++.
T Consensus 377 NG-----AQcKAVcVEAGMiALRr 395 (424)
T KOG0652|consen 377 NG-----AQCKAVCVEAGMIALRR 395 (424)
T ss_pred Cc-----hhheeeehhhhHHHHhc
Confidence 67 67788898888888886
No 59
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.80 E-value=1.8e-18 Score=182.90 Aligned_cols=169 Identities=15% Similarity=0.223 Sum_probs=128.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCC------CCcEE
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGV------CNPVM 311 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~------~~~Vl 311 (728)
..+.+++|+||||||||.+|+++|+.++.+++.++.+++.+ +|+|..+..+.+.|+.|.. ..+||
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~s---------k~vGEsEk~IR~~F~~A~~~a~~~~aPcVL 216 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELES---------ENAGEPGKLIRQRYREAADIIKKKGKMSCL 216 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhc---------CcCCcHHHHHHHHHHHHHHHhhccCCCeEE
Confidence 45668999999999999999999999999999999887665 7999999999999987742 34599
Q ss_pred EEecccccCCCCCCCH--------HHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhC--CeeEEE
Q 004834 312 LLDEIDKTGSDVRGDP--------ASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLD--RMEVIE 381 (728)
Q Consensus 312 llDEidkl~~~~~~~~--------~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~--R~~vI~ 381 (728)
||||||.+.+.+.++. .+.|+.++|.-.+-.....+ .-.-....+++|+|||.++.++|+|++ ||+.+
T Consensus 217 FIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w-~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~- 294 (413)
T PLN00020 217 FINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDW-REKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF- 294 (413)
T ss_pred EEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccc-cccccCCCceEEEeCCCcccCCHhHcCCCCCCce-
Confidence 9999999988653211 25678888742110000000 000124568999999999999999999 99853
Q ss_pred cCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHccc
Q 004834 382 LPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 429 (728)
Q Consensus 382 ~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~ 429 (728)
|..|+.++|.+|++.++.. ..++...+..|++.+.+
T Consensus 295 i~lPd~e~R~eIL~~~~r~------------~~l~~~dv~~Lv~~f~g 330 (413)
T PLN00020 295 YWAPTREDRIGVVHGIFRD------------DGVSREDVVKLVDTFPG 330 (413)
T ss_pred eCCCCHHHHHHHHHHHhcc------------CCCCHHHHHHHHHcCCC
Confidence 3478999999999988531 34567888999998876
No 60
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.79 E-value=6.2e-19 Score=197.73 Aligned_cols=168 Identities=24% Similarity=0.360 Sum_probs=123.2
Q ss_pred hccccchHHHHHHHHHHHHhhccCC-------CCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE--------EEecCCc
Q 004834 212 DSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFI--------RISLGGV 276 (728)
Q Consensus 212 ~~~i~G~~~vk~~i~~~l~~~~~~~-------~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~--------~i~~~~~ 276 (728)
..++.|++..++.+.+.+..+..++ -.++.++||+||||||||++|+++|+.++.+++ .+++.+
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~- 259 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG- 259 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc-
Confidence 4578999999999999887654332 245668999999999999999999999976532 222222
Q ss_pred cchhhhccCccccccCCcchHHHHHhhcCC-----CCcEEEEecccccCCCCCC----CH----HHHHHHhcCccccccc
Q 004834 277 KDEADIRGHRRTYIGSMPGRLIDGLKRVGV-----CNPVMLLDEIDKTGSDVRG----DP----ASALLEVLDPEQNKTF 343 (728)
Q Consensus 277 ~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~-----~~~VlllDEidkl~~~~~~----~~----~~~Ll~~Ld~~~~~~~ 343 (728)
+++. ..|+|.....+...|..+.. ...|+||||+|.+...+.. +. .+.|+..||...
T Consensus 260 ---~eLl---~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~---- 329 (512)
T TIGR03689 260 ---PELL---NKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE---- 329 (512)
T ss_pred ---hhhc---ccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc----
Confidence 1121 25777777666655554332 2349999999999765421 11 356777676321
Q ss_pred ccCCCCeeecCCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhc
Q 004834 344 NDHYLNVPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLI 399 (728)
Q Consensus 344 ~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~ 399 (728)
+..++++|+|||+++.+||+|++ ||+ .|+|+.|+.+++.+|++.++.
T Consensus 330 ---------~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 330 ---------SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred ---------cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 23568999999999999999998 998 699999999999999999874
No 61
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.5e-19 Score=180.01 Aligned_cols=215 Identities=20% Similarity=0.313 Sum_probs=165.0
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHhhccCCC-------CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc
Q 004834 204 LKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 276 (728)
Q Consensus 204 l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~-------~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~ 276 (728)
..+-.+....++.|..+.++.+.+.+..+.++|. .++.++|+|||||||||.+|+++|+..+.-|+++-.++.
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 3344455677899999999999999988877654 567799999999999999999999999999999876553
Q ss_pred cchhhhccCccccccCCcchHHHHHhhcCCCC-cEEEEecccccCCCCC-----C--CHHHHHHHhcCcccccccccCCC
Q 004834 277 KDEADIRGHRRTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVR-----G--DPASALLEVLDPEQNKTFNDHYL 348 (728)
Q Consensus 277 ~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~-~VlllDEidkl~~~~~-----~--~~~~~Ll~~Ld~~~~~~~~d~~~ 348 (728)
. .+|+|.....+.+.|..+.... .++|+||||.+...+- + ..+..+|+++. |..+|-.
T Consensus 248 v---------qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~--qldgfdp--- 313 (435)
T KOG0729|consen 248 V---------QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELIN--QLDGFDP--- 313 (435)
T ss_pred H---------HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHH--hccCCCC---
Confidence 2 2799998888888887776543 4999999999976442 1 23677888775 3334432
Q ss_pred CeeecCCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHH-HHHH
Q 004834 349 NVPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMV-KLVI 424 (728)
Q Consensus 349 ~~~~d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l-~~l~ 424 (728)
..|+-++++||+++.++|+|++ |++ -++|..|+.+.+.+|++.|-. ...++.+.- +.++
T Consensus 314 -----rgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihak------------smsverdir~ella 376 (435)
T KOG0729|consen 314 -----RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAK------------SMSVERDIRFELLA 376 (435)
T ss_pred -----CCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecc------------ccccccchhHHHHH
Confidence 2467788999999999999998 998 699999999999999988732 233333332 3344
Q ss_pred HHcccccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 425 QRYTREAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 425 ~~~~~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
+-|....| +.|..+|-+|.+.+++.
T Consensus 377 rlcpnstg-----aeirsvcteagmfaira 401 (435)
T KOG0729|consen 377 RLCPNSTG-----AEIRSVCTEAGMFAIRA 401 (435)
T ss_pred hhCCCCcc-----hHHHHHHHHhhHHHHHH
Confidence 44555667 78999999999988876
No 62
>CHL00176 ftsH cell division protein; Validated
Probab=99.79 E-value=1.4e-18 Score=200.90 Aligned_cols=204 Identities=28% Similarity=0.368 Sum_probs=149.5
Q ss_pred ccccchHHHHHHHHHHHHhhccC------CCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLK------PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 286 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~------~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~ 286 (728)
+++.|++++++.+.+.+...... ....+.++||+||||||||++|+++|..++.+++.++++...+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~-------- 254 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE-------- 254 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH--------
Confidence 47899999999988876542210 1234568999999999999999999999999999888766432
Q ss_pred cccccCCcchHHHHHhhcCCCC-cEEEEecccccCCCCC------CCH----HHHHHHhcCcccccccccCCCCeeecCC
Q 004834 287 RTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVR------GDP----ASALLEVLDPEQNKTFNDHYLNVPFDLS 355 (728)
Q Consensus 287 ~~yvG~~~g~l~~~~~~a~~~~-~VlllDEidkl~~~~~------~~~----~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~ 355 (728)
.++|.....+...|..+.... +|+||||+|.+...+. ++. .+.|+..+|. +. ...
T Consensus 255 -~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg-----~~--------~~~ 320 (638)
T CHL00176 255 -MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG-----FK--------GNK 320 (638)
T ss_pred -HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcc-----cc--------CCC
Confidence 345555556677777665433 4999999999975431 111 3344444442 11 124
Q ss_pred CcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccc
Q 004834 356 KVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAG 432 (728)
Q Consensus 356 ~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G 432 (728)
++++|+|||.++.++++|++ ||+ .|.++.|+.++|.+|++.++.. . ...++..+..+++...+..|
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~-----~------~~~~d~~l~~lA~~t~G~sg 389 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN-----K------KLSPDVSLELIARRTPGFSG 389 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh-----c------ccchhHHHHHHHhcCCCCCH
Confidence 67899999999999999997 897 7999999999999999998642 1 12345567788877766677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 004834 433 VRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 433 ~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
++|.++|++|++...+.
T Consensus 390 -----aDL~~lvneAal~a~r~ 406 (638)
T CHL00176 390 -----ADLANLLNEAAILTARR 406 (638)
T ss_pred -----HHHHHHHHHHHHHHHHh
Confidence 78889999988877665
No 63
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=5.5e-18 Score=190.73 Aligned_cols=207 Identities=27% Similarity=0.360 Sum_probs=161.0
Q ss_pred hhhccccchHHHHHHHHHHHHhhccC------CCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhc
Q 004834 210 RLDSDHYGLVRVKQRIIEYLAVRKLK------PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIR 283 (728)
Q Consensus 210 ~L~~~i~G~~~vk~~i~~~l~~~~~~------~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~ 283 (728)
+-..++.|.+++|+.+.+.+...+-. ...-+.+++|+||||||||.|||++|...+.||+.++.+.+..
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe----- 221 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE----- 221 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh-----
Confidence 34467899999999998877654321 1134568999999999999999999999999999998887655
Q ss_pred cCccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCC-----C-C----HHHHHHHhcCcccccccccCCCCeee
Q 004834 284 GHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVR-----G-D----PASALLEVLDPEQNKTFNDHYLNVPF 352 (728)
Q Consensus 284 g~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~-----~-~----~~~~Ll~~Ld~~~~~~~~d~~~~~~~ 352 (728)
.|||-...++++.|.++....| |+||||||.+...+. | | ..|.||.-||. |..
T Consensus 222 ----mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDG-----F~~------- 285 (596)
T COG0465 222 ----MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG-----FGG------- 285 (596)
T ss_pred ----hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhcc-----CCC-------
Confidence 6888888899999988876545 999999999987662 1 1 24666666663 322
Q ss_pred cCCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHccc
Q 004834 353 DLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 429 (728)
Q Consensus 353 d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~ 429 (728)
-.++++|++||+++.+||+|++ ||+ .|.++.|+...|.+|++-|+....+. ..++ +..+++...+
T Consensus 286 -~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~--------~~Vd---l~~iAr~tpG 353 (596)
T COG0465 286 -NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA--------EDVD---LKKIARGTPG 353 (596)
T ss_pred -CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC--------CcCC---HHHHhhhCCC
Confidence 2468999999999999999998 998 79999999999999999885322111 1223 3337777777
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 430 EAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 430 ~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
.+| .++.++|..|++...+.
T Consensus 354 fsG-----AdL~nl~NEAal~aar~ 373 (596)
T COG0465 354 FSG-----ADLANLLNEAALLAARR 373 (596)
T ss_pred ccc-----chHhhhHHHHHHHHHHh
Confidence 888 79999999999998887
No 64
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.6e-18 Score=176.65 Aligned_cols=213 Identities=23% Similarity=0.395 Sum_probs=160.0
Q ss_pred HHHhhhccccchHHHHHHHHHHHHhhccCCC-------CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccch
Q 004834 207 AKERLDSDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDE 279 (728)
Q Consensus 207 ~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~-------~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~ 279 (728)
..+.-.+.+.|.-.....+.+.+.++..++. .++.+++||||||+|||.+|+++|..++.+|+.+..++..+
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~- 204 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD- 204 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh-
Confidence 3344455678888888888888877655433 45668999999999999999999999999999999888766
Q ss_pred hhhccCccccccCCcchHHHHHhhcCCCC-cEEEEecccccCCCCC-----C--CHHHHHHHhcCcccccccccCCCCee
Q 004834 280 ADIRGHRRTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVR-----G--DPASALLEVLDPEQNKTFNDHYLNVP 351 (728)
Q Consensus 280 s~l~g~~~~yvG~~~g~l~~~~~~a~~~~-~VlllDEidkl~~~~~-----~--~~~~~Ll~~Ld~~~~~~~~d~~~~~~ 351 (728)
+|+|+....+.+.|+.+.... +++|+||||.....+. + ..+..|.++++.. .+|-
T Consensus 205 --------kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqm--dgfd------- 267 (388)
T KOG0651|consen 205 --------KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQM--DGFD------- 267 (388)
T ss_pred --------hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhh--ccch-------
Confidence 799998888888888876443 4999999999876441 1 1256788887732 2222
Q ss_pred ecCCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcc
Q 004834 352 FDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT 428 (728)
Q Consensus 352 ~d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~ 428 (728)
.+..|-+|+|+|+++.++|||++ |++ .+.+|-|....+..|++.|- ..+..+ -.++++++..+.+.+.
T Consensus 268 -~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~--~~i~~~------Geid~eaivK~~d~f~ 338 (388)
T KOG0651|consen 268 -TLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHV--QPIDFH------GEIDDEAILKLVDGFN 338 (388)
T ss_pred -hcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeecc--cccccc------ccccHHHHHHHHhccC
Confidence 24567899999999999999998 998 79999999999998887763 222333 3577888888877664
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 429 REAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 429 ~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
+ .++.++|++|-+..++.
T Consensus 339 g--------ad~rn~~tEag~Fa~~~ 356 (388)
T KOG0651|consen 339 G--------ADLRNVCTEAGMFAIPE 356 (388)
T ss_pred h--------HHHhhhcccccccccch
Confidence 3 44677777766554443
No 65
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.6e-18 Score=186.07 Aligned_cols=153 Identities=25% Similarity=0.384 Sum_probs=141.2
Q ss_pred ceeEEEEEEEecCCceEEEeeccchHHHHHHHHHHHHHHHHhhhccchhcccCCCCCcccEEEEccCCCCCCCCchhHHH
Q 004834 549 GEVQFVEATAMRGKGELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMNLLQGRDIHIHFPAGAVPKDGPSAGVT 628 (728)
Q Consensus 549 g~~~~iE~~~~~G~~~~~~tG~~~~~~kES~~~a~~~~~~~~~~l~~~~~~~~~~~~~~di~i~~~~g~~~kdGpsagla 628 (728)
+.++.|||..++|.|.++++|+.+..|+||.++ +|+.+.+.++. ||.+.|+||+.++++||.|+.+|++
T Consensus 2 a~~V~VEv~~s~glp~~~iVGL~d~av~EsreR----Vraal~nsgf~-------~P~~ritiNLaPadl~KeG~~fDLp 70 (490)
T COG0606 2 APPVEVEVDISNGLPGFTIVGLPDTAVKESRER----VRAALTNSGFE-------FPAKRITINLAPADLPKEGSRFDLP 70 (490)
T ss_pred CCccceEEEecCCCcceeeeecCcHHHHHHHHH----HHHHHHhcCCC-------CChHHeeeccCcccccccccccchH
Confidence 567899999999999999999999999999999 77777666654 8999999999999999999999999
Q ss_pred HHHHHHHhccCCCCC--CCeEEEeeeCCCceeeecCCHHHHHHHHHHcCCCeeeccccCccccccchHhhhCCcEEEEeC
Q 004834 629 LVTALVSLFSRKRVR--ADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAK 706 (728)
Q Consensus 629 ia~allSa~~~~~v~--~~~a~tGEi~L~G~V~~Vggi~~ki~~A~~~G~~~viiP~~n~~d~~~ip~~~~~~i~i~~v~ 706 (728)
||++++.+...+|-. .++.+.||++|+|.++||+|+..-+.+|+..+.+.+++|++|..+..-++ +++|+++.
T Consensus 71 Ial~ilaa~~~~~~~~l~~~~~lGEL~LdG~l~~v~G~lp~~~~a~~~~~~~~i~p~~n~~Easli~-----~~~v~~~~ 145 (490)
T COG0606 71 IALGILAASGQLPADALILYEFLGELSLDGLLRPVGGVLPAALAAKEKGKRGLIVPKENAEEASLIG-----GLPVYGAR 145 (490)
T ss_pred HHHHHHHhccccchhhhhhHHhhhhhhccCcccccCCcchhHHHHhhccCCcEEcchhccccccccC-----CCCccchh
Confidence 999999999988753 68899999999999999999999999999999999999999999887776 99999999
Q ss_pred CHHHHHHHHHcC
Q 004834 707 RMEDVLEQAFEG 718 (728)
Q Consensus 707 ~~~e~~~~~~~~ 718 (728)
++.++++++ ++
T Consensus 146 ~l~ev~~~l-~g 156 (490)
T COG0606 146 YLEEVVNFL-EG 156 (490)
T ss_pred hHHHHHHHh-cC
Confidence 999999985 54
No 66
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.75 E-value=3.8e-17 Score=165.41 Aligned_cols=186 Identities=25% Similarity=0.328 Sum_probs=144.6
Q ss_pred hccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCcccccc
Q 004834 212 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIG 291 (728)
Q Consensus 212 ~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG 291 (728)
-.+++||+++|+.+.-++...+.+. ...-|+||+||||.||||||..||+.++.++...+..-.
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~-e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l--------------- 88 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRG-EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL--------------- 88 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcC-CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc---------------
Confidence 3479999999999999988776533 445589999999999999999999999887765443222
Q ss_pred CCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccC---CCCeeecCCCcEEEEecCCCCC
Q 004834 292 SMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDH---YLNVPFDLSKVIFVATANRAQP 368 (728)
Q Consensus 292 ~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~---~~~~~~d~~~vi~I~TtN~~~~ 368 (728)
..+|.+...+.... .+.|+|+|||+.+++.. -..|+..|+..+.+..... .-.+.+|+..+.+|++|.+...
T Consensus 89 eK~gDlaaiLt~Le-~~DVLFIDEIHrl~~~v----EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~ 163 (332)
T COG2255 89 EKPGDLAAILTNLE-EGDVLFIDEIHRLSPAV----EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGM 163 (332)
T ss_pred cChhhHHHHHhcCC-cCCeEEEehhhhcChhH----HHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecccccc
Confidence 23455555554432 46799999999999987 7889999987655433222 1235678899999999999999
Q ss_pred CChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcc
Q 004834 369 IPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT 428 (728)
Q Consensus 369 l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~ 428 (728)
+..+|++||- +..+..|+.++..+|+.+.- . .-++.+++++...++++..
T Consensus 164 lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a-----~-----~l~i~i~~~~a~eIA~rSR 214 (332)
T COG2255 164 LTNPLRDRFGIIQRLEFYTVEELEEIVKRSA-----K-----ILGIEIDEEAALEIARRSR 214 (332)
T ss_pred ccchhHHhcCCeeeeecCCHHHHHHHHHHHH-----H-----HhCCCCChHHHHHHHHhcc
Confidence 9999999996 79999999999999998862 1 1247899999999998543
No 67
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.7e-16 Score=164.49 Aligned_cols=202 Identities=21% Similarity=0.355 Sum_probs=167.6
Q ss_pred eeechhhhhhhcCCCccCchHHHhh-hcCCceeEeeEEeecC-ceeEEEEEEEecCCceEEEeecc-chHHHHHHHHHHH
Q 004834 508 LVVDEAMLEKVLGPPRFDDREAAER-VAAPGISVGLVWTNFG-GEVQFVEATAMRGKGELHLTGQL-GDVIKESAQIALT 584 (728)
Q Consensus 508 ~~It~~~L~~~Lg~~~~~~~~~~~~-~~~~G~~~gl~~~~~g-g~~~~iE~~~~~G~~~~~~tG~~-~~~~kES~~~a~~ 584 (728)
+..++.--+.+...|.....+.++. -++||+++-++-+..| -.+...|++...|+|+....|.- ....|||++.++.
T Consensus 474 yidne~l~e~fvsvpe~gg~~lipag~~kpg~~~~v~~~~~g~~glyrfe~q~~ag~gk~~~sg~gs~t~~keair~~f~ 553 (683)
T COG4930 474 YIDNETLEEFFVSVPEQGGSELIPAGMPKPGVVHLVTQAESGMTGLYRFETQMTAGNGKHSVSGLGSSTSAKEAIRVGFD 553 (683)
T ss_pred eeccccHHHHheeCcccCCceecCCCCCCCceEEEEeecccCceeeEEEEEEEeecCCccccccCCCCccHHHHHHHHHH
Confidence 3344444455667777666443333 3578999998888887 57899999999999999999985 4468999999999
Q ss_pred HHHHHhhhccchhcccCCCCCcccEEEEccCCCCCCCCchh--HHHHHHHHHHhccCCCCCCCeEEEeeeCCCceeeecC
Q 004834 585 WVRARATDLQLVAEDGMNLLQGRDIHIHFPAGAVPKDGPSA--GVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVG 662 (728)
Q Consensus 585 ~~~~~~~~l~~~~~~~~~~~~~~di~i~~~~g~~~kdGpsa--glaia~allSa~~~~~v~~~~a~tGEi~L~G~V~~Vg 662 (728)
|.+.+++....+.. |..++.|+|+..- --.|||. .||..+|++|.+..+|+...+++.|.++|.|.|.||-
T Consensus 554 yfk~n~~~vs~t~~-----~~e~~y~lhv~~l--~~~g~s~~~sl~a~ialcs~~l~k~~qeq~~vlgsmtlgg~i~~~~ 626 (683)
T COG4930 554 YFKGNLSRVSATAK-----FSEHEYHLHVVEL--HNTGPSTATSLAALIALCSVLLAKPVQEQMVVLGSMTLGGVINPVQ 626 (683)
T ss_pred Hhhcchhhhhceee-----eccceeeEEeeee--ccCCcchhhhHHHHHHHHHHHhhccHHhhhhhheeeecccccchHH
Confidence 99999887765422 7889999998443 3457775 4566678999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCCeeeccccCccccccchHhhhCCcEEEEeCCHHHHHHHHH
Q 004834 663 GVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAF 716 (728)
Q Consensus 663 gi~~ki~~A~~~G~~~viiP~~n~~d~~~ip~~~~~~i~i~~v~~~~e~~~~~~ 716 (728)
.+..-++-|.++|.|+|++|.+..-|+..+|+++..+.++-+++..-||+-.++
T Consensus 627 ~la~~lq~~~dsgakkv~lp~ssa~~i~tvp~~lftkfqvsfy~~pvdavyka~ 680 (683)
T COG4930 627 DLAASLQLAFDSGAKKVLLPMSSAVDIPTVPAELFTKFQVSFYSEPVDAVYKAL 680 (683)
T ss_pred HHHHHHHHHHhcCCceEEEeccccCCcCCCCHHHhhhheeeeecCcHHHHHHHh
Confidence 999999999999999999999999999999999999999999999988876654
No 68
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.74 E-value=1e-17 Score=203.40 Aligned_cols=192 Identities=15% Similarity=0.193 Sum_probs=135.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchh-------hh-ccC------------------------
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA-------DI-RGH------------------------ 285 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s-------~l-~g~------------------------ 285 (728)
.++.++||+||||||||.||+++|...+.||+.++++...+.. .+ .|.
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcch
Confidence 3456899999999999999999999999999999877643210 00 000
Q ss_pred ccccccCCcch--HHHHHhhcCCCCc-EEEEecccccCCCCCCC-HHHHHHHhcCcccccccccCCCCeeecCCCcEEEE
Q 004834 286 RRTYIGSMPGR--LIDGLKRVGVCNP-VMLLDEIDKTGSDVRGD-PASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVA 361 (728)
Q Consensus 286 ~~~yvG~~~g~--l~~~~~~a~~~~~-VlllDEidkl~~~~~~~-~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~ 361 (728)
..++++...+. +...|..|....| ||+|||||.+..+.... ..+.|+..||.... .....+++|||
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~----------~~s~~~VIVIA 1777 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCE----------RCSTRNILVIA 1777 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccc----------cCCCCCEEEEE
Confidence 01112333333 6777777765555 99999999998763222 25777787774210 01235789999
Q ss_pred ecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCH--HHHHHHHHHcccccchHHH
Q 004834 362 TANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPE--AMVKLVIQRYTREAGVRNL 436 (728)
Q Consensus 362 TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d--~~l~~l~~~~~~~~G~R~L 436 (728)
|||+++.+||||++ ||+ .|.++.|+..++.+++...+. ..+ +.+.+ ..+..++....+..|
T Consensus 1778 ATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~-----tkg-----~~L~~~~vdl~~LA~~T~GfSG---- 1843 (2281)
T CHL00206 1778 STHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSY-----TRG-----FHLEKKMFHTNGFGSITMGSNA---- 1843 (2281)
T ss_pred eCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHh-----hcC-----CCCCcccccHHHHHHhCCCCCH----
Confidence 99999999999998 998 799999999888887764321 011 11211 125667777777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004834 437 ERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 437 ~~~I~~l~r~a~~~~~~~ 454 (728)
++|+++|++|++.++++
T Consensus 1844 -ADLanLvNEAaliAirq 1860 (2281)
T CHL00206 1844 -RDLVALTNEALSISITQ 1860 (2281)
T ss_pred -HHHHHHHHHHHHHHHHc
Confidence 89999999999998887
No 69
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.74 E-value=3.7e-17 Score=172.92 Aligned_cols=183 Identities=23% Similarity=0.339 Sum_probs=133.2
Q ss_pred cccchHHHH---HHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccc
Q 004834 214 DHYGLVRVK---QRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYI 290 (728)
Q Consensus 214 ~i~G~~~vk---~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yv 290 (728)
+++||++.. ..+...+. ...-++++|+|||||||||+|+.||+..+.+|..++... ....
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-~gvk---------- 87 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVE------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-SGVK---------- 87 (436)
T ss_pred HhcChHhhhCCCchHHHHHh------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-ccHH----------
Confidence 578887755 22233332 244568999999999999999999999999999988543 1122
Q ss_pred cCCcchHHHHHhhc---C--CCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEE--ec
Q 004834 291 GSMPGRLIDGLKRV---G--VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVA--TA 363 (728)
Q Consensus 291 G~~~g~l~~~~~~a---~--~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~--Tt 363 (728)
.+.+++..+ . ....|+|+|||+++.+.. |..||..++.+ .+++|+ |.
T Consensus 88 -----dlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q----QD~lLp~vE~G-----------------~iilIGATTE 141 (436)
T COG2256 88 -----DLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ----QDALLPHVENG-----------------TIILIGATTE 141 (436)
T ss_pred -----HHHHHHHHHHHHHhcCCceEEEEehhhhcChhh----hhhhhhhhcCC-----------------eEEEEeccCC
Confidence 223333322 1 124699999999998876 89999999843 246777 45
Q ss_pred CCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHH
Q 004834 364 NRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAAL 443 (728)
Q Consensus 364 N~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l 443 (728)
|+...+.++|++|+.++.|.+++.++..+++++.+. ....++....+.+++++++++++...+ .+|..-+.++-.
T Consensus 142 NPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~---~~~rgl~~~~~~i~~~a~~~l~~~s~G--D~R~aLN~LE~~ 216 (436)
T COG2256 142 NPSFELNPALLSRARVFELKPLSSEDIKKLLKRALL---DEERGLGGQIIVLDEEALDYLVRLSNG--DARRALNLLELA 216 (436)
T ss_pred CCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHh---hhhcCCCcccccCCHHHHHHHHHhcCc--hHHHHHHHHHHH
Confidence 788899999999999999999999999999988543 345566666778999999999986654 345444444443
Q ss_pred H
Q 004834 444 A 444 (728)
Q Consensus 444 ~ 444 (728)
+
T Consensus 217 ~ 217 (436)
T COG2256 217 A 217 (436)
T ss_pred H
Confidence 3
No 70
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=6e-18 Score=183.32 Aligned_cols=210 Identities=24% Similarity=0.298 Sum_probs=161.8
Q ss_pred HhhhccccchHHHHHHHHHHHHhhccCCC------CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhh
Q 004834 209 ERLDSDHYGLVRVKQRIIEYLAVRKLKPD------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADI 282 (728)
Q Consensus 209 ~~L~~~i~G~~~vk~~i~~~l~~~~~~~~------~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l 282 (728)
.+...++.|++.+++.+.+++.++.++++ .+...+||.||||+|||.|+++||.+.+..|..++.+...+
T Consensus 149 ~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts---- 224 (428)
T KOG0740|consen 149 NVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS---- 224 (428)
T ss_pred cccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh----
Confidence 34456889999999999999988766443 44558999999999999999999999999999988776555
Q ss_pred ccCccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCCCCH--------HHHHHHhcCcccccccccCCCCeeec
Q 004834 283 RGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRGDP--------ASALLEVLDPEQNKTFNDHYLNVPFD 353 (728)
Q Consensus 283 ~g~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~~~~--------~~~Ll~~Ld~~~~~~~~d~~~~~~~d 353 (728)
+|+|..+..+...|.-|....| |+|+||||++...+.... ...|++..- . .. .-
T Consensus 225 -----K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~-~-----~s------~~ 287 (428)
T KOG0740|consen 225 -----KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDG-K-----NS------AP 287 (428)
T ss_pred -----hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhcc-c-----cC------CC
Confidence 8999998777777777766555 999999999977652211 123333221 1 00 11
Q ss_pred CCCcEEEEecCCCCCCChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccc
Q 004834 354 LSKVIFVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAG 432 (728)
Q Consensus 354 ~~~vi~I~TtN~~~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G 432 (728)
-.++++|+|||.++.+|+++++||. ++++|.|+.+.+..++++.|. ++ .-.+++..+..+++...+..|
T Consensus 288 ~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~-----~~-----~~~l~~~d~~~l~~~Tegysg 357 (428)
T KOG0740|consen 288 DDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLK-----EQ-----PNGLSDLDISLLAKVTEGYSG 357 (428)
T ss_pred CCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHH-----hC-----CCCccHHHHHHHHHHhcCccc
Confidence 2378999999999999999999997 899999999999999988753 22 235677778888886666677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 004834 433 VRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 433 ~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
.+|..+|..|++--.+.
T Consensus 358 -----sdi~~l~kea~~~p~r~ 374 (428)
T KOG0740|consen 358 -----SDITALCKEAAMGPLRE 374 (428)
T ss_pred -----ccHHHHHHHhhcCchhh
Confidence 89999999888765554
No 71
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.6e-18 Score=184.02 Aligned_cols=254 Identities=20% Similarity=0.301 Sum_probs=169.9
Q ss_pred cccchHHHHHHHHH-HHHhhccCCC-------CCCCEEEEEcCCCCChhHHHHHHHHHhCCC-eEEEecCCccchhhhcc
Q 004834 214 DHYGLVRVKQRIIE-YLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASALGRK-FIRISLGGVKDEADIRG 284 (728)
Q Consensus 214 ~i~G~~~vk~~i~~-~l~~~~~~~~-------~~~~~lLL~GPpGtGKT~LakalA~~l~~~-~~~i~~~~~~~~s~l~g 284 (728)
.+.|++.--..|.. +.+.+...|. ..-+++|||||||||||.+||.|+..|+.. --.++..+..+
T Consensus 222 GIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~------ 295 (744)
T KOG0741|consen 222 GIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILN------ 295 (744)
T ss_pred ccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHH------
Confidence 36777765544433 3333332221 334579999999999999999999999743 33344333333
Q ss_pred CccccccCCcchHHHHHhhcCC------CCc---EEEEecccccCCCCC---C------CHHHHHHHhcCcccccccccC
Q 004834 285 HRRTYIGSMPGRLIDGLKRVGV------CNP---VMLLDEIDKTGSDVR---G------DPASALLEVLDPEQNKTFNDH 346 (728)
Q Consensus 285 ~~~~yvG~~~g~l~~~~~~a~~------~~~---VlllDEidkl~~~~~---~------~~~~~Ll~~Ld~~~~~~~~d~ 346 (728)
+|||+++.+++..|..|.. .++ ||++||||.++..+. | ...|.||.-||...
T Consensus 296 ---KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVe------- 365 (744)
T KOG0741|consen 296 ---KYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVE------- 365 (744)
T ss_pred ---HhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHH-------
Confidence 8999999999988876531 122 999999999987541 1 13688999888532
Q ss_pred CCCeeecCCCcEEEEecCCCCCCChhhhC--CeeE-EEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHH
Q 004834 347 YLNVPFDLSKVIFVATANRAQPIPPPLLD--RMEV-IELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLV 423 (728)
Q Consensus 347 ~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~--R~~v-I~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l 423 (728)
.+.|+++|+-||+.+-+|++|++ ||++ +++.-|++..|.+|++.|-. .+++++.- .-.++-+.+..+
T Consensus 366 ------qLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~--rMre~~~l--~~dVdl~elA~l 435 (744)
T KOG0741|consen 366 ------QLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTK--RMRENNKL--SADVDLKELAAL 435 (744)
T ss_pred ------hhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhh--hhhhcCCC--CCCcCHHHHHHH
Confidence 36789999999999999999998 9995 99999999999999998853 23334322 234454555566
Q ss_pred HHHcccccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCceeEe---eccCCCccccccc
Q 004834 424 IQRYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEME---VIPMGESTHEVSN 500 (728)
Q Consensus 424 ~~~~~~~~G~R~L~~~I~~l~r~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~---~~~~~~~~~~~~~ 500 (728)
.++|+ | +.|+.+++.|...++.+. .+.++.+.++ ....+++..+|-.
T Consensus 436 TKNfS---G-----AEleglVksA~S~A~nR~----------------------vk~~~~~~~~~~~~e~lkV~r~DFl~ 485 (744)
T KOG0741|consen 436 TKNFS---G-----AELEGLVKSAQSFAMNRH----------------------VKAGGKVEVDPVAIENLKVTRGDFLN 485 (744)
T ss_pred hcCCc---h-----hHHHHHHHHHHHHHHHhh----------------------hccCcceecCchhhhheeecHHHHHH
Confidence 66664 4 788999988777666551 1111222222 2233456666666
Q ss_pred ccccC-CceeechhhhhhhcCCCc
Q 004834 501 TFRIT-SPLVVDEAMLEKVLGPPR 523 (728)
Q Consensus 501 ~~~~~-~~~~It~~~L~~~Lg~~~ 523 (728)
++... ..|-+++++|+.++-...
T Consensus 486 aL~dVkPAFG~see~l~~~~~~Gm 509 (744)
T KOG0741|consen 486 ALEDVKPAFGISEEDLERFVMNGM 509 (744)
T ss_pred HHHhcCcccCCCHHHHHHHHhCCc
Confidence 65432 346677777777765533
No 72
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.72 E-value=6.9e-17 Score=188.90 Aligned_cols=204 Identities=24% Similarity=0.324 Sum_probs=149.2
Q ss_pred ccccchHHHHHHHHHHHHhhcc------CCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKL------KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 286 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~------~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~ 286 (728)
.++.|.+.+++++.+.+..... .....+++++|+||||||||++++++|..++.+|+.++.+.+..
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~-------- 223 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE-------- 223 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH--------
Confidence 3678999988888877654211 01123457999999999999999999999999999988765432
Q ss_pred cccccCCcchHHHHHhhcCCCC-cEEEEecccccCCCCCC-----C-----HHHHHHHhcCcccccccccCCCCeeecCC
Q 004834 287 RTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVRG-----D-----PASALLEVLDPEQNKTFNDHYLNVPFDLS 355 (728)
Q Consensus 287 ~~yvG~~~g~l~~~~~~a~~~~-~VlllDEidkl~~~~~~-----~-----~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~ 355 (728)
.|+|.....+...|..+.... .|+||||+|.+...+.. + ..+.||..||. |.. ..
T Consensus 224 -~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg-----~~~--------~~ 289 (644)
T PRK10733 224 -MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG-----FEG--------NE 289 (644)
T ss_pred -hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhc-----ccC--------CC
Confidence 356666666777776665444 49999999999765421 1 23556666663 211 24
Q ss_pred CcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccc
Q 004834 356 KVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAG 432 (728)
Q Consensus 356 ~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G 432 (728)
+++||+|||+++.+++++++ ||+ .|.++.|+.+++.+|++.++.+. .+. ..++ +..+++...+..|
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~-----~l~---~~~d---~~~la~~t~G~sg 358 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV-----PLA---PDID---AAIIARGTPGFSG 358 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC-----CCC---CcCC---HHHHHhhCCCCCH
Confidence 67999999999999999997 997 79999999999999999986321 111 1122 4456676667777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 004834 433 VRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 433 ~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
++|.++|++|+..+.++
T Consensus 359 -----adl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 359 -----ADLANLVNEAALFAARG 375 (644)
T ss_pred -----HHHHHHHHHHHHHHHHc
Confidence 89999999999988775
No 73
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.72 E-value=4.9e-18 Score=166.14 Aligned_cols=108 Identities=35% Similarity=0.553 Sum_probs=84.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCC----CeEEEecCCccc-------hhhhccCccccccCCcchHHHHHhhcCCC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGR----KFIRISLGGVKD-------EADIRGHRRTYIGSMPGRLIDGLKRVGVC 307 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~----~~~~i~~~~~~~-------~s~l~g~~~~yvG~~~g~l~~~~~~a~~~ 307 (728)
|..+++|+||+|||||.+|+++|+.+.. ++++++|+.+.. .+.+.|.+++|+++.+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~------------- 68 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEE------------- 68 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHH-------------
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccc-------------
Confidence 3458999999999999999999999984 899999998766 3333444444433211
Q ss_pred CcEEEEecccccCC-----------CCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC
Q 004834 308 NPVMLLDEIDKTGS-----------DVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ 367 (728)
Q Consensus 308 ~~VlllDEidkl~~-----------~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~ 367 (728)
..|||||||||+++ .+ ++.||++||.+ .+.+.+ ++.+|+++++||+|+|...
T Consensus 69 ~gVVllDEidKa~~~~~~~~~v~~~~V----~~~LL~~le~g---~~~d~~-g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 69 GGVVLLDEIDKAHPSNSGGADVSGEGV----QNSLLQLLEGG---TLTDSY-GRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HTEEEEETGGGCSHTTTTCSHHHHHHH----HHHHHHHHHHS---EEEETT-CCEEEGTTEEEEEEESSST
T ss_pred hhhhhhHHHhhccccccccchhhHHHH----HHHHHHHhccc---ceeccc-ceEEEeCCceEEEeccccc
Confidence 23999999999999 55 89999999975 344544 6899999999999999875
No 74
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.71 E-value=9.2e-17 Score=191.56 Aligned_cols=204 Identities=25% Similarity=0.351 Sum_probs=152.8
Q ss_pred hccccchHHHHHHHHHHHHhhccCC-------CCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhcc
Q 004834 212 DSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRG 284 (728)
Q Consensus 212 ~~~i~G~~~vk~~i~~~l~~~~~~~-------~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g 284 (728)
.++++|++.+++.+.+++..+..++ -.++.++||+||||||||++|+++|+.++.+++.++.....+
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~------ 250 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMS------ 250 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhc------
Confidence 3468999999999999887653322 145678999999999999999999999999998887654332
Q ss_pred CccccccCCcchHHHHHhhcCCCC-cEEEEecccccCCCCCC---C----HHHHHHHhcCcccccccccCCCCeeecCCC
Q 004834 285 HRRTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVRG---D----PASALLEVLDPEQNKTFNDHYLNVPFDLSK 356 (728)
Q Consensus 285 ~~~~yvG~~~g~l~~~~~~a~~~~-~VlllDEidkl~~~~~~---~----~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~ 356 (728)
.|.|.....+...|..+.... +|+||||+|.+.+.... + ..+.|+++||... +..+
T Consensus 251 ---~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~-------------~~~~ 314 (733)
T TIGR01243 251 ---KYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLK-------------GRGR 314 (733)
T ss_pred ---ccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccc-------------cCCC
Confidence 466776667777777654433 59999999999876421 1 2466788777421 1235
Q ss_pred cEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCcccccc-CHHHHHHHHHHcccccc
Q 004834 357 VIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQI-PEAMVKLVIQRYTREAG 432 (728)
Q Consensus 357 vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i-~d~~l~~l~~~~~~~~G 432 (728)
+++|+|||.++.+++++++ ||+ .+.++.|+.+++.+|++.+... ..+ ++..+..+++...+..|
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~------------~~l~~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN------------MPLAEDVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC------------CCCccccCHHHHHHhCCCCCH
Confidence 7889999999999999997 897 7999999999999999966321 112 23346667776666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 004834 433 VRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 433 ~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
+++..+|+.+++..++.
T Consensus 383 -----adl~~l~~~a~~~al~r 399 (733)
T TIGR01243 383 -----ADLAALAKEAAMAALRR 399 (733)
T ss_pred -----HHHHHHHHHHHHHHHHH
Confidence 68888999999888876
No 75
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.71 E-value=2.5e-16 Score=168.97 Aligned_cols=196 Identities=26% Similarity=0.341 Sum_probs=137.5
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccC
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGS 292 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~ 292 (728)
.+++|++++++.+..++...... .....+++|+||||||||++|+++|+.++.++..+..+....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~-------------- 68 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR-QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK-------------- 68 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--------------
Confidence 36899999999999888654432 234457999999999999999999999987765544322111
Q ss_pred CcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCC---CCeeecCCCcEEEEecCCCCCC
Q 004834 293 MPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHY---LNVPFDLSKVIFVATANRAQPI 369 (728)
Q Consensus 293 ~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~---~~~~~d~~~vi~I~TtN~~~~l 369 (728)
.+.+...+.... ...++||||++.+.++. .+.|+.+|+..+...+.+.. .....+...+++|++||....+
T Consensus 69 -~~~l~~~l~~~~-~~~vl~iDEi~~l~~~~----~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l 142 (305)
T TIGR00635 69 -PGDLAAILTNLE-EGDVLFIDEIHRLSPAV----EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGML 142 (305)
T ss_pred -chhHHHHHHhcc-cCCEEEEehHhhhCHHH----HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCcccc
Confidence 123333333322 34699999999998765 67888888765433222211 0112344557889999999999
Q ss_pred ChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHH
Q 004834 370 PPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLA 441 (728)
Q Consensus 370 ~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~ 441 (728)
+++|++||. ++.|++|+.++..+++++... . ..+.++++++.++++.+.+.. |.+.+.+.
T Consensus 143 ~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~-----~-----~~~~~~~~al~~ia~~~~G~p--R~~~~ll~ 203 (305)
T TIGR00635 143 TSPLRDRFGIILRLEFYTVEELAEIVSRSAG-----L-----LNVEIEPEAALEIARRSRGTP--RIANRLLR 203 (305)
T ss_pred CHHHHhhcceEEEeCCCCHHHHHHHHHHHHH-----H-----hCCCcCHHHHHHHHHHhCCCc--chHHHHHH
Confidence 999999996 689999999999999987642 1 236899999999998765533 44333333
No 76
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.3e-16 Score=167.12 Aligned_cols=202 Identities=22% Similarity=0.336 Sum_probs=156.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHH-HhhcCC-----CCcEEEE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDG-LKRVGV-----CNPVMLL 313 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~-~~~a~~-----~~~Vlll 313 (728)
..++||+||+|+|||.||+.||+.++.||...+|+..+- .+|||..-..+.+. +..|.+ ..+|+||
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQ--------AGYVGeDVEsvi~KLl~~A~~nVekAQqGIVfl 297 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQ--------AGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFL 297 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhh--------cccccccHHHHHHHHHHHccCCHHHHhcCeEEE
Confidence 458999999999999999999999999999999987543 37999876544443 333432 2459999
Q ss_pred ecccccCCCC---------CC-CHHHHHHHhcCccccc------ccccCCCCeeecCCCcEEEEecCCC-----------
Q 004834 314 DEIDKTGSDV---------RG-DPASALLEVLDPEQNK------TFNDHYLNVPFDLSKVIFVATANRA----------- 366 (728)
Q Consensus 314 DEidkl~~~~---------~~-~~~~~Ll~~Ld~~~~~------~~~d~~~~~~~d~~~vi~I~TtN~~----------- 366 (728)
||+||+.... .| ..+.+||.+++..-.+ +-......+.+|.++++||+..-..
T Consensus 298 DEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~ 377 (564)
T KOG0745|consen 298 DEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLD 377 (564)
T ss_pred ehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhc
Confidence 9999997432 22 2378999999853221 1122333567899999999843211
Q ss_pred ---------------------------------------------CCCChhhhCCee-EEEcCCCCHHHHHHHHH---Hh
Q 004834 367 ---------------------------------------------QPIPPPLLDRME-VIELPGYTPEEKLRIAM---RH 397 (728)
Q Consensus 367 ---------------------------------------------~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~---~~ 397 (728)
..+-|+|..||. ++.|..++.+.+++|+. ..
T Consensus 378 d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPkna 457 (564)
T KOG0745|consen 378 DKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNA 457 (564)
T ss_pred chhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhh
Confidence 057899999998 69999999999999984 56
Q ss_pred hchHHHhhcCCCccccccCHHHHHHHHH-HcccccchHHHHHHHHHHHHHHHH
Q 004834 398 LIPRVLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAALARAAAV 449 (728)
Q Consensus 398 l~~~~~~~~~~~~~~~~i~d~~l~~l~~-~~~~~~G~R~L~~~I~~l~r~a~~ 449 (728)
|.++...-+++.+..+.+++++++.+++ ...+..|+|.|+..+++++-++.+
T Consensus 458 L~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamf 510 (564)
T KOG0745|consen 458 LGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMF 510 (564)
T ss_pred HHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcc
Confidence 7777778888888899999999999998 566799999999999998865444
No 77
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.2e-16 Score=187.18 Aligned_cols=212 Identities=23% Similarity=0.300 Sum_probs=168.1
Q ss_pred hccccchHHHHHHHHHHHHhhccCCC-------CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhcc
Q 004834 212 DSDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRG 284 (728)
Q Consensus 212 ~~~i~G~~~vk~~i~~~l~~~~~~~~-------~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g 284 (728)
..++.|++.++..+.+.+..+.++|. .++..+||+||||||||..|+++|..+....-++++-- ..-++..
T Consensus 264 fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffm-rkgaD~l- 341 (1080)
T KOG0732|consen 264 FDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFM-RKGADCL- 341 (1080)
T ss_pred ccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhh-hcCchhh-
Confidence 35789999999999999988777654 45567999999999999999999999865444444322 1111221
Q ss_pred CccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCC-------CCCHHHHHHHhcCcccccccccCCCCeeecCCC
Q 004834 285 HRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDV-------RGDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 356 (728)
Q Consensus 285 ~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~-------~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~ 356 (728)
..|+|..+.++...|..+....| |+|+||||-++|-+ +....+.||-+||+... .+.
T Consensus 342 --skwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGlds-------------Rgq 406 (1080)
T KOG0732|consen 342 --SKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDS-------------RGQ 406 (1080)
T ss_pred --ccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCC-------------CCc
Confidence 27999999899888888876655 99999999998855 12336889999985321 356
Q ss_pred cEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccch
Q 004834 357 VIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGV 433 (728)
Q Consensus 357 vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~ 433 (728)
+++|++||+++.++|+|++ ||+ .+.|+.|+.+.+.+|+..|-. +....++...+.+++....++.|
T Consensus 407 VvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtr----------kw~~~i~~~l~~~la~~t~gy~g- 475 (1080)
T KOG0732|consen 407 VVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTR----------KWEPPISRELLLWLAEETSGYGG- 475 (1080)
T ss_pred eEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhcc----------CCCCCCCHHHHHHHHHhccccch-
Confidence 8999999999999999987 998 799999999999999998832 23356888999999998877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 004834 434 RNLERNLAALARAAAVKVAEQE 455 (728)
Q Consensus 434 R~L~~~I~~l~r~a~~~~~~~~ 455 (728)
++|..+|..|++..++..
T Consensus 476 ----aDlkaLCTeAal~~~~r~ 493 (1080)
T KOG0732|consen 476 ----ADLKALCTEAALIALRRS 493 (1080)
T ss_pred ----HHHHHHHHHHhhhhhccc
Confidence 789999999999999874
No 78
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=1.1e-16 Score=177.09 Aligned_cols=195 Identities=19% Similarity=0.205 Sum_probs=131.7
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE--EEecCCccchhhhc-cCcccc-
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI--RISLGGVKDEADIR-GHRRTY- 289 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~--~i~~~~~~~~s~l~-g~~~~y- 289 (728)
+++||+.++..+..++.... .++.++|+|||||||||+|+.+|+.+++... ...|+.-.+...+. |....+
T Consensus 19 dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dvi 93 (484)
T PRK14956 19 DVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVL 93 (484)
T ss_pred HHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccce
Confidence 68999999999888776432 2345899999999999999999999975321 11111111100000 000000
Q ss_pred -ccC-C---cch---HHHHHhhcCC--CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEE
Q 004834 290 -IGS-M---PGR---LIDGLKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIF 359 (728)
Q Consensus 290 -vG~-~---~g~---l~~~~~~a~~--~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~ 359 (728)
+.. . -.. +.+.+...+. ...|+||||+|.+.... +++||..|++. ..+++|
T Consensus 94 EIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A----~NALLKtLEEP---------------p~~viF 154 (484)
T PRK14956 94 EIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQS----FNALLKTLEEP---------------PAHIVF 154 (484)
T ss_pred eechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHH----HHHHHHHhhcC---------------CCceEE
Confidence 000 0 011 2222222221 23499999999998765 99999999742 246789
Q ss_pred EEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHH
Q 004834 360 VATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERN 439 (728)
Q Consensus 360 I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~ 439 (728)
|++||....+++++++||..+.|.+++.++..+.+++.+ .. .++.++++++..|++... .++|..-+.
T Consensus 155 ILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~-----~~-----Egi~~e~eAL~~Ia~~S~--Gd~RdAL~l 222 (484)
T PRK14956 155 ILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLC-----KI-----ENVQYDQEGLFWIAKKGD--GSVRDMLSF 222 (484)
T ss_pred EeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHHcC--ChHHHHHHH
Confidence 999999999999999999999999999998887777653 22 347899999999997654 556666666
Q ss_pred HHHHH
Q 004834 440 LAALA 444 (728)
Q Consensus 440 I~~l~ 444 (728)
+++++
T Consensus 223 Leq~i 227 (484)
T PRK14956 223 MEQAI 227 (484)
T ss_pred HHHHH
Confidence 66554
No 79
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.70 E-value=5e-16 Score=168.36 Aligned_cols=199 Identities=25% Similarity=0.314 Sum_probs=138.9
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccC
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGS 292 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~ 292 (728)
.+++|+++.++.+..++...... ..+.++++|+||||||||++|+++|+.++..+..++......
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~-------------- 89 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKR-GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK-------------- 89 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhc-CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC--------------
Confidence 46899999999998877654322 244568999999999999999999999988776554332111
Q ss_pred CcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCC---CCeeecCCCcEEEEecCCCCCC
Q 004834 293 MPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHY---LNVPFDLSKVIFVATANRAQPI 369 (728)
Q Consensus 293 ~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~---~~~~~d~~~vi~I~TtN~~~~l 369 (728)
.+.+...+.... ...|+|||||+.+.... .+.|+..|+........+.. ........++.+|++||....+
T Consensus 90 -~~~l~~~l~~l~-~~~vl~IDEi~~l~~~~----~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l 163 (328)
T PRK00080 90 -PGDLAAILTNLE-EGDVLFIDEIHRLSPVV----EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLL 163 (328)
T ss_pred -hHHHHHHHHhcc-cCCEEEEecHhhcchHH----HHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccC
Confidence 123333333322 35699999999997654 66777777653322111110 0112234557889999999999
Q ss_pred ChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHH
Q 004834 370 PPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 370 ~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
+++|++||. ++.|++|+.+++.+|+++... . .++.++++++.++++.+.+.. |.+.+.+.++.
T Consensus 164 ~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~-----~-----~~~~~~~~~~~~ia~~~~G~p--R~a~~~l~~~~ 227 (328)
T PRK00080 164 TSPLRDRFGIVQRLEFYTVEELEKIVKRSAR-----I-----LGVEIDEEGALEIARRSRGTP--RIANRLLRRVR 227 (328)
T ss_pred CHHHHHhcCeeeecCCCCHHHHHHHHHHHHH-----H-----cCCCcCHHHHHHHHHHcCCCc--hHHHHHHHHHH
Confidence 999999996 799999999999999987642 1 247899999999998776533 55555555443
No 80
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.2e-16 Score=175.69 Aligned_cols=204 Identities=25% Similarity=0.323 Sum_probs=163.1
Q ss_pred ccccchHHHHHHHHHHHHhhccCC-------CCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccC
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGH 285 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~-------~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~ 285 (728)
.++.|.......+.+.+..+...+ ..+++++|++||||||||.+++++|+..+..++.++..+...
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~------- 256 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELIS------- 256 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHH-------
Confidence 467888888888888777655433 256678999999999999999999999998888887665433
Q ss_pred ccccccCCcchHHHHHhhcCCCC-c-EEEEecccccCCCCCCC------HHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 286 RRTYIGSMPGRLIDGLKRVGVCN-P-VMLLDEIDKTGSDVRGD------PASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 286 ~~~yvG~~~g~l~~~~~~a~~~~-~-VlllDEidkl~~~~~~~------~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
+|.|+.+..+..+|..+.... | ++|+||+|.+.+++.+. ..+.|+.+||... ..+++
T Consensus 257 --k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~-------------~~~~v 321 (693)
T KOG0730|consen 257 --KFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK-------------PDAKV 321 (693)
T ss_pred --hcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc-------------CcCcE
Confidence 688888889999998876554 4 99999999999865332 1467888888532 23678
Q ss_pred EEEEecCCCCCCChhhhC-Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHH
Q 004834 358 IFVATANRAQPIPPPLLD-RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 435 (728)
Q Consensus 358 i~I~TtN~~~~l~~~Ll~-R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~ 435 (728)
++++|+|++..+++++++ ||+ -+.+.-|+..+|.+|++.+.. ..+ .. ++..+.+++....+..|
T Consensus 322 ivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k-----~~~-----~~-~~~~l~~iA~~thGyvG--- 387 (693)
T KOG0730|consen 322 IVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTK-----KMN-----LL-SDVDLEDIAVSTHGYVG--- 387 (693)
T ss_pred EEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHH-----hcC-----Cc-chhhHHHHHHHccchhH---
Confidence 999999999999999997 998 699999999999999998852 111 12 57788888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004834 436 LERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 436 L~~~I~~l~r~a~~~~~~~ 454 (728)
+++..+|+.|++...++
T Consensus 388 --aDL~~l~~ea~~~~~r~ 404 (693)
T KOG0730|consen 388 --ADLAALCREASLQATRR 404 (693)
T ss_pred --HHHHHHHHHHHHHHhhh
Confidence 89999999999988876
No 81
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.69 E-value=1.5e-16 Score=162.66 Aligned_cols=178 Identities=26% Similarity=0.310 Sum_probs=125.3
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCC-eEEEecCCccchhhhccCccccccC
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK-FIRISLGGVKDEADIRGHRRTYIGS 292 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~-~~~i~~~~~~~~s~l~g~~~~yvG~ 292 (728)
++.||+.+++.+...+.. ...|++|||||||||||+.|+++|++++.+ .....+-+ ...++-+|.. .++.
T Consensus 37 e~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~-lnaSderGis--vvr~ 107 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE-LNASDERGIS--VVRE 107 (346)
T ss_pred hhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh-hccccccccc--chhh
Confidence 689999999999988764 346899999999999999999999999652 11111100 1122222221 1111
Q ss_pred Ccc---hHHHHHh-hcCC-CCc--EEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCC
Q 004834 293 MPG---RLIDGLK-RVGV-CNP--VMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR 365 (728)
Q Consensus 293 ~~g---~l~~~~~-~a~~-~~~--VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~ 365 (728)
.-. ++..... .-++ ..| |++|||.|.+..+. +++|...||.. ...+.||..+|.
T Consensus 108 Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsda----q~aLrr~mE~~---------------s~~trFiLIcny 168 (346)
T KOG0989|consen 108 KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDA----QAALRRTMEDF---------------SRTTRFILICNY 168 (346)
T ss_pred hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHH----HHHHHHHHhcc---------------ccceEEEEEcCC
Confidence 001 1111111 1111 112 99999999998877 99999999842 235689999999
Q ss_pred CCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHccc
Q 004834 366 AQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 429 (728)
Q Consensus 366 ~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~ 429 (728)
.+.+++++.+||.-+.|+++..+.....++.. ..++++.+++++++.++....+
T Consensus 169 lsrii~pi~SRC~KfrFk~L~d~~iv~rL~~I----------a~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 169 LSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKI----------ASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred hhhCChHHHhhHHHhcCCCcchHHHHHHHHHH----------HHHhCCCCCHHHHHHHHHHcCC
Confidence 99999999999999999999998877777665 2245689999999999986543
No 82
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.69 E-value=6.3e-16 Score=162.15 Aligned_cols=150 Identities=20% Similarity=0.225 Sum_probs=112.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCcccccc---------------------CCcchHH
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIG---------------------SMPGRLI 298 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG---------------------~~~g~l~ 298 (728)
+.+++|.||||||||++|+++|..++.++..+++....+.+++.|...+|.. ..+|.+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 4578999999999999999999999999999999987777888775432211 1134555
Q ss_pred HHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeee-cCCCcEEEEecCCCC-----CCChh
Q 004834 299 DGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPF-DLSKVIFVATANRAQ-----PIPPP 372 (728)
Q Consensus 299 ~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~-d~~~vi~I~TtN~~~-----~l~~~ 372 (728)
.+++. +.+++||||+++.++. ++.|+++|++++...-.....+..+ --.++.+|+|+|... .++++
T Consensus 101 ~A~~~----g~~lllDEi~r~~~~~----q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~a 172 (262)
T TIGR02640 101 LAVRE----GFTLVYDEFTRSKPET----NNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDA 172 (262)
T ss_pred HHHHc----CCEEEEcchhhCCHHH----HHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHH
Confidence 55442 4599999999998887 9999999987542211111111112 123567899999863 67999
Q ss_pred hhCCeeEEEcCCCCHHHHHHHHHHh
Q 004834 373 LLDRMEVIELPGYTPEEKLRIAMRH 397 (728)
Q Consensus 373 Ll~R~~vI~~~~~t~ee~~~Il~~~ 397 (728)
|++||..+.++.|+.++..+|++.+
T Consensus 173 L~~R~~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 173 LLDRLITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred HHhhcEEEECCCCCHHHHHHHHHHh
Confidence 9999999999999999999999876
No 83
>PLN03025 replication factor C subunit; Provisional
Probab=99.68 E-value=5e-16 Score=167.69 Aligned_cols=189 Identities=21% Similarity=0.281 Sum_probs=132.6
Q ss_pred CCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCC---
Q 004834 191 LPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK--- 267 (728)
Q Consensus 191 iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~--- 267 (728)
+||....++..++ +++|++++++.+..++.. ...++++|+||||||||++|+++|+.+..+
T Consensus 1 ~~w~~kyrP~~l~----------~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~ 64 (319)
T PLN03025 1 LPWVEKYRPTKLD----------DIVGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHELLGPNYK 64 (319)
T ss_pred CChhhhcCCCCHH----------HhcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCc
Confidence 5887766664443 688999999988776542 344689999999999999999999998322
Q ss_pred --eEEEecCCccchhhhccCccccccCCcchHHHH---Hhhc-----CCCCcEEEEecccccCCCCCCCHHHHHHHhcCc
Q 004834 268 --FIRISLGGVKDEADIRGHRRTYIGSMPGRLIDG---LKRV-----GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDP 337 (728)
Q Consensus 268 --~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~---~~~a-----~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~ 337 (728)
+..++.+..... ..+.+. +... .....|++|||+|.+.... +++|+..++.
T Consensus 65 ~~~~eln~sd~~~~---------------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~a----q~aL~~~lE~ 125 (319)
T PLN03025 65 EAVLELNASDDRGI---------------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGA----QQALRRTMEI 125 (319)
T ss_pred cceeeecccccccH---------------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHH----HHHHHHHHhc
Confidence 222222211000 111111 1111 1123499999999998765 8999998863
Q ss_pred ccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCH
Q 004834 338 EQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPE 417 (728)
Q Consensus 338 ~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d 417 (728)
. ...+.||+++|....+.++|++||.++.|++++.++....++... +. .++.+++
T Consensus 126 ~---------------~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~-----~~-----egi~i~~ 180 (319)
T PLN03025 126 Y---------------SNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVV-----EA-----EKVPYVP 180 (319)
T ss_pred c---------------cCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHH-----HH-----cCCCCCH
Confidence 1 123468889999999999999999999999999999988887763 22 3478999
Q ss_pred HHHHHHHHHcccccchHHHHHHHH
Q 004834 418 AMVKLVIQRYTREAGVRNLERNLA 441 (728)
Q Consensus 418 ~~l~~l~~~~~~~~G~R~L~~~I~ 441 (728)
+++.+++..+. ..+|.+-+.++
T Consensus 181 ~~l~~i~~~~~--gDlR~aln~Lq 202 (319)
T PLN03025 181 EGLEAIIFTAD--GDMRQALNNLQ 202 (319)
T ss_pred HHHHHHHHHcC--CCHHHHHHHHH
Confidence 99999998765 35566555555
No 84
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1e-15 Score=157.80 Aligned_cols=239 Identities=23% Similarity=0.374 Sum_probs=161.8
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHhhcc--------CCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 204 LKAAKERLDSDHYGLVRVKQRIIEYLAVRKL--------KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 204 l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~--------~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
..+.-..|++.++||+++|+.+.-++..++. +..-.+.++|+.||+|+|||.+||-+|+..+.||+.+..+-
T Consensus 6 PreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATK 85 (444)
T COG1220 6 PREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATK 85 (444)
T ss_pred HHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeee
Confidence 4456678899999999999999888865432 22245679999999999999999999999999999886443
Q ss_pred ccc-------------------------------------------hhhhccCccccccCC-------------------
Q 004834 276 VKD-------------------------------------------EADIRGHRRTYIGSM------------------- 293 (728)
Q Consensus 276 ~~~-------------------------------------------~s~l~g~~~~yvG~~------------------- 293 (728)
++. ...+.+..+...|..
T Consensus 86 fTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkLr~ 165 (444)
T COG1220 86 FTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKLRE 165 (444)
T ss_pred eeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHHHHc
Confidence 200 000111111111110
Q ss_pred -------------------------cch------H-----------------------------------------HHHH
Q 004834 294 -------------------------PGR------L-----------------------------------------IDGL 301 (728)
Q Consensus 294 -------------------------~g~------l-----------------------------------------~~~~ 301 (728)
+|. + .+++
T Consensus 166 GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~eAi 245 (444)
T COG1220 166 GELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAI 245 (444)
T ss_pred CCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 110 1 1122
Q ss_pred hhcCCCCcEEEEecccccCCCCC-C--C-----HHHHHHHhcCcccccccccCCCCeeecCCCcEEEEec----CCCCCC
Q 004834 302 KRVGVCNPVMLLDEIDKTGSDVR-G--D-----PASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA----NRAQPI 369 (728)
Q Consensus 302 ~~a~~~~~VlllDEidkl~~~~~-~--~-----~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~Tt----N~~~~l 369 (728)
..+. .++|+|||||||++.... + | .+..||.+++.... ...| | ++....++||++. ..|+.+
T Consensus 246 ~~aE-~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV---~TKy-G-~VkTdHILFIasGAFh~sKPSDL 319 (444)
T COG1220 246 DAAE-QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTV---STKY-G-PVKTDHILFIASGAFHVAKPSDL 319 (444)
T ss_pred HHHH-hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCcee---eccc-c-ccccceEEEEecCceecCChhhc
Confidence 2222 356999999999976431 1 2 36789999986432 2223 1 5566778999854 346789
Q ss_pred ChhhhCCeeE-EEcCCCCHHHHHHHHHH---hhchHHHhhcCCCccccccCHHHHHHHHH-Hc-----ccccchHHHHHH
Q 004834 370 PPPLLDRMEV-IELPGYTPEEKLRIAMR---HLIPRVLDQHGLGSEFLQIPEAMVKLVIQ-RY-----TREAGVRNLERN 439 (728)
Q Consensus 370 ~~~Ll~R~~v-I~~~~~t~ee~~~Il~~---~l~~~~~~~~~~~~~~~~i~d~~l~~l~~-~~-----~~~~G~R~L~~~ 439 (728)
-|+|..||.+ +++.++|.+...+|+.. .|.+++..-.......+.+++++++.|++ .| +.+.|+|.|...
T Consensus 320 iPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTv 399 (444)
T COG1220 320 IPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTV 399 (444)
T ss_pred ChhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHH
Confidence 9999999995 99999999999988843 34443333333334568999999999998 22 237899999999
Q ss_pred HHHHHHHHH
Q 004834 440 LAALARAAA 448 (728)
Q Consensus 440 I~~l~r~a~ 448 (728)
+++++...+
T Consensus 400 lErlLediS 408 (444)
T COG1220 400 LERLLEDIS 408 (444)
T ss_pred HHHHHHHhC
Confidence 988885433
No 85
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=9.9e-16 Score=172.16 Aligned_cols=195 Identities=23% Similarity=0.341 Sum_probs=128.4
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCe-------EEE------ecCCccchh
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKF-------IRI------SLGGVKDEA 280 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~-------~~i------~~~~~~~~s 280 (728)
+++||+++++.+..++... ..++.++|+|||||||||+|+++|+.++..- ... ..+...+..
T Consensus 15 divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 15 EVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred HccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 7999999988888776532 2334689999999999999999999986421 000 000000111
Q ss_pred hhccCccccccCCcchHHHHHhhcCC--CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcE
Q 004834 281 DIRGHRRTYIGSMPGRLIDGLKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 358 (728)
Q Consensus 281 ~l~g~~~~yvG~~~g~l~~~~~~a~~--~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi 358 (728)
++.+.....+... ..+.+.....+. ...|+||||+|.+.... ++.|+..|+.. ..+++
T Consensus 90 el~aa~~~gid~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a----~~~LLk~LE~p---------------~~~vv 149 (472)
T PRK14962 90 ELDAASNRGIDEI-RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEA----FNALLKTLEEP---------------PSHVV 149 (472)
T ss_pred EEeCcccCCHHHH-HHHHHHHhhChhcCCeEEEEEEChHHhHHHH----HHHHHHHHHhC---------------CCcEE
Confidence 1111000000000 112222222221 23499999999997554 78899988742 13457
Q ss_pred EEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHH
Q 004834 359 FVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLER 438 (728)
Q Consensus 359 ~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~ 438 (728)
||++||.+..+++++++||.++.|.+++.++...+++..+ +. .++.++++++..|++... .++|.+-+
T Consensus 150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~-----~~-----egi~i~~eal~~Ia~~s~--GdlR~aln 217 (472)
T PRK14962 150 FVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVA-----EA-----EGIEIDREALSFIAKRAS--GGLRDALT 217 (472)
T ss_pred EEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHHhC--CCHHHHHH
Confidence 7777777778999999999999999999999888887764 22 246899999999998653 56777777
Q ss_pred HHHHHHH
Q 004834 439 NLAALAR 445 (728)
Q Consensus 439 ~I~~l~r 445 (728)
.++.++.
T Consensus 218 ~Le~l~~ 224 (472)
T PRK14962 218 MLEQVWK 224 (472)
T ss_pred HHHHHHH
Confidence 7766553
No 86
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=1.1e-15 Score=175.02 Aligned_cols=195 Identities=21% Similarity=0.219 Sum_probs=130.9
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE--EEecCCccchhhhc-cCccccc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI--RISLGGVKDEADIR-GHRRTYI 290 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~--~i~~~~~~~~s~l~-g~~~~yv 290 (728)
+++||+++++.+..++.... -.+.+||+||+||||||+++.+|+.+++... ...|+.-.+...+. |....++
T Consensus 17 EVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 17 SLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred HHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEE
Confidence 78999999999998875332 2345799999999999999999999975321 01111000000000 0000010
Q ss_pred c------CCcchHHHHHhh---cCC--CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEE
Q 004834 291 G------SMPGRLIDGLKR---VGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIF 359 (728)
Q Consensus 291 G------~~~g~l~~~~~~---a~~--~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~ 359 (728)
- ..-..+.+.+.. .+. ...|+||||+|.+.... +|+||..|++. ..++.|
T Consensus 92 EIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A----~NALLKtLEEP---------------P~~v~F 152 (830)
T PRK07003 92 EMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHA----FNAMLKTLEEP---------------PPHVKF 152 (830)
T ss_pred EecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHH----HHHHHHHHHhc---------------CCCeEE
Confidence 0 001123333332 221 22499999999998755 89999999852 245789
Q ss_pred EEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHH
Q 004834 360 VATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERN 439 (728)
Q Consensus 360 I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~ 439 (728)
|++||....|++.+++||..|.|..++.++..+.+++.+. .+++.++++++..|++...+ ++|..-+.
T Consensus 153 ILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~----------~EgI~id~eAL~lIA~~A~G--smRdALsL 220 (830)
T PRK07003 153 ILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILG----------EERIAFEPQALRLLARAAQG--SMRDALSL 220 (830)
T ss_pred EEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcCC--CHHHHHHH
Confidence 9999999999999999999999999999999988877642 23478899999999886643 45555555
Q ss_pred HHHHH
Q 004834 440 LAALA 444 (728)
Q Consensus 440 I~~l~ 444 (728)
+.+.+
T Consensus 221 LdQAi 225 (830)
T PRK07003 221 TDQAI 225 (830)
T ss_pred HHHHH
Confidence 44433
No 87
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=9.9e-16 Score=173.40 Aligned_cols=192 Identities=21% Similarity=0.248 Sum_probs=128.1
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE----EE---ecCCccchhhhc-cC
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI----RI---SLGGVKDEADIR-GH 285 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~----~i---~~~~~~~~s~l~-g~ 285 (728)
+++||+.+++.+..++...++ .+.+||+||+||||||+|+.+|+.+++.-- .+ .|+.-.+...+. |.
T Consensus 17 dVIGQe~vv~~L~~al~~gRL-----pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQRL-----HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGR 91 (700)
T ss_pred HHcCcHHHHHHHHHHHHhCCC-----ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCC
Confidence 799999999999998864432 345799999999999999999999976210 00 111110000000 00
Q ss_pred cccccc---C---CcchHHHHHh---hcCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecC
Q 004834 286 RRTYIG---S---MPGRLIDGLK---RVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDL 354 (728)
Q Consensus 286 ~~~yvG---~---~~g~l~~~~~---~a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~ 354 (728)
...++. . .-..+.+.+. ..+.. ..|+||||+|.++... +|+||..|++- .
T Consensus 92 hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~A----aNALLKTLEEP---------------P 152 (700)
T PRK12323 92 FVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHA----FNAMLKTLEEP---------------P 152 (700)
T ss_pred CCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHH----HHHHHHhhccC---------------C
Confidence 001110 0 0122333322 22221 2399999999998765 89999999852 2
Q ss_pred CCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchH
Q 004834 355 SKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVR 434 (728)
Q Consensus 355 ~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R 434 (728)
.+++||++||.+..+++.++|||..+.|..++.++..+.+++.+. . .++.++++++..|++... .+.|
T Consensus 153 ~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~-----~-----Egi~~d~eAL~~IA~~A~--Gs~R 220 (700)
T PRK12323 153 EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILG-----E-----EGIAHEVNALRLLAQAAQ--GSMR 220 (700)
T ss_pred CCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHH-----H-----cCCCCCHHHHHHHHHHcC--CCHH
Confidence 457899999999999999999999999999999998888877642 1 236788888888877543 3344
Q ss_pred HHHHHHH
Q 004834 435 NLERNLA 441 (728)
Q Consensus 435 ~L~~~I~ 441 (728)
...+.+.
T Consensus 221 dALsLLd 227 (700)
T PRK12323 221 DALSLTD 227 (700)
T ss_pred HHHHHHH
Confidence 4444443
No 88
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=1.9e-15 Score=171.45 Aligned_cols=191 Identities=19% Similarity=0.181 Sum_probs=132.0
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE-E-EecC-----------Cccchh
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI-R-ISLG-----------GVKDEA 280 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~-~-i~~~-----------~~~~~s 280 (728)
+++||+.+++.+..++.... ..+.+||+||||||||++|+++|+.+++... . -.|+ ...+.-
T Consensus 16 dVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDvi 90 (702)
T PRK14960 16 ELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLI 90 (702)
T ss_pred HhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceE
Confidence 79999999999988886332 2457899999999999999999999975321 0 0011 111111
Q ss_pred hhccCccccccCCcchHHHHHhh---cCC--CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCC
Q 004834 281 DIRGHRRTYIGSMPGRLIDGLKR---VGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS 355 (728)
Q Consensus 281 ~l~g~~~~yvG~~~g~l~~~~~~---a~~--~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~ 355 (728)
++-+..+. + -..+.+.+.. .+. ...|+||||+|.++... +++|+..|+.. ..
T Consensus 91 EIDAAs~~--~--VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A----~NALLKtLEEP---------------P~ 147 (702)
T PRK14960 91 EIDAASRT--K--VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHS----FNALLKTLEEP---------------PE 147 (702)
T ss_pred EecccccC--C--HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHH----HHHHHHHHhcC---------------CC
Confidence 11111100 0 1223333222 222 12399999999998765 89999999842 23
Q ss_pred CcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHH
Q 004834 356 KVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 435 (728)
Q Consensus 356 ~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~ 435 (728)
++.||++||.+..+++++++||.++.|.+++.++..+.+++.+. . .++.++++++..|++... .++|.
T Consensus 148 ~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~-----k-----EgI~id~eAL~~IA~~S~--GdLRd 215 (702)
T PRK14960 148 HVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILE-----K-----EQIAADQDAIWQIAESAQ--GSLRD 215 (702)
T ss_pred CcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHH-----H-----cCCCCCHHHHHHHHHHcC--CCHHH
Confidence 46788888888999999999999999999999999888877642 2 247899999999987653 46677
Q ss_pred HHHHHHHHH
Q 004834 436 LERNLAALA 444 (728)
Q Consensus 436 L~~~I~~l~ 444 (728)
.-+.+.+++
T Consensus 216 ALnLLDQaI 224 (702)
T PRK14960 216 ALSLTDQAI 224 (702)
T ss_pred HHHHHHHHH
Confidence 666665544
No 89
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=2.4e-15 Score=170.80 Aligned_cols=194 Identities=21% Similarity=0.251 Sum_probs=132.8
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE--EEecC-----------Cccchh
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI--RISLG-----------GVKDEA 280 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~--~i~~~-----------~~~~~s 280 (728)
+++||+.+++.+..++....+ ++.+||+||||||||++|+.+|+.+++... .-.|+ ...+.-
T Consensus 17 divGq~~v~~~L~~~~~~~~l-----~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQYL-----HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred HhcCCHHHHHHHHHHHHhCCC-----CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 799999999999998864332 335899999999999999999999965311 01111 111111
Q ss_pred hhccCccccccCCcchHHHHHhhcCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcE
Q 004834 281 DIRGHRRTYIGSMPGRLIDGLKRVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 358 (728)
Q Consensus 281 ~l~g~~~~yvG~~~g~l~~~~~~a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi 358 (728)
++.+.....+... ..+.+.+...+.. ..|+||||+|.+++.. +++|+..|++. ..++.
T Consensus 92 eidaas~~~v~~i-R~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a----~naLLk~LEep---------------p~~~~ 151 (509)
T PRK14958 92 EVDAASRTKVEDT-RELLDNIPYAPTKGRFKVYLIDEVHMLSGHS----FNALLKTLEEP---------------PSHVK 151 (509)
T ss_pred EEcccccCCHHHH-HHHHHHHhhccccCCcEEEEEEChHhcCHHH----HHHHHHHHhcc---------------CCCeE
Confidence 1111111111110 1122222333322 2399999999998765 89999999852 23567
Q ss_pred EEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHH
Q 004834 359 FVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLER 438 (728)
Q Consensus 359 ~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~ 438 (728)
||++||.+..+++.+++||..+.|.+++.++....++..+. . .++.++++++..+++... .++|...+
T Consensus 152 fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~-----~-----egi~~~~~al~~ia~~s~--GslR~al~ 219 (509)
T PRK14958 152 FILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLK-----E-----ENVEFENAALDLLARAAN--GSVRDALS 219 (509)
T ss_pred EEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHH-----H-----cCCCCCHHHHHHHHHHcC--CcHHHHHH
Confidence 88888888999999999999999999999988877776642 2 246789999999988653 56777777
Q ss_pred HHHHHH
Q 004834 439 NLAALA 444 (728)
Q Consensus 439 ~I~~l~ 444 (728)
.+++.+
T Consensus 220 lLdq~i 225 (509)
T PRK14958 220 LLDQSI 225 (509)
T ss_pred HHHHHH
Confidence 776654
No 90
>COG1750 Archaeal serine proteases [General function prediction only]
Probab=99.62 E-value=4.2e-15 Score=163.49 Aligned_cols=160 Identities=23% Similarity=0.284 Sum_probs=135.8
Q ss_pred ceeEEEEEEEecCCceEEEeec-cchH-HHHHHHHHHHHHHHHhhhccchhcccCCCCCcccEEEEccCCCCCCCCchhH
Q 004834 549 GEVQFVEATAMRGKGELHLTGQ-LGDV-IKESAQIALTWVRARATDLQLVAEDGMNLLQGRDIHIHFPAGAVPKDGPSAG 626 (728)
Q Consensus 549 g~~~~iE~~~~~G~~~~~~tG~-~~~~-~kES~~~a~~~~~~~~~~l~~~~~~~~~~~~~~di~i~~~~g~~~kdGpsag 626 (728)
|.+..+.+.+.||.|++.+.|. ...+ |+-|++.| ....+..+|.. +.+.|+++.+..++.-..|||+|
T Consensus 49 gv~~~~~vtv~pG~G~v~v~t~P~t~~d~~~SArvA---a~~A~~~~Gvd-------~ssyd~~i~v~a~~pVVGgPSag 118 (579)
T COG1750 49 GVPINISVTVTPGDGRVYVATFPYTQIDMQGSARVA---AGVALRLAGVD-------MSSYDVYIAVEADSPVVGGPSAG 118 (579)
T ss_pred eeeeeeeeeecCCCceEEeecCCCchhccchhhHHH---HHHHHHhhCCC-------ccceeEEEEEecCCCeecCcccc
Confidence 6788888888999999777665 5667 99999986 33333445543 78899999998888778889999
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEeeeCCCceeeecCCHHHHHHHHHHcCCCeeeccccCccccccchHhh-hCCcEEEEe
Q 004834 627 VTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAV-LASLEIILA 705 (728)
Q Consensus 627 laia~allSa~~~~~v~~~~a~tGEi~L~G~V~~Vggi~~ki~~A~~~G~~~viiP~~n~~d~~~ip~~~-~~~i~i~~v 705 (728)
.+|++|+++++.+..++.+++|||-|.-+|.+.||||+++|+.+|.+.|+|-++||.+++. +.++-+.- +.+++++.|
T Consensus 119 g~mtva~~~~~~~~~~~~~v~mTG~I~PDgsigpVGGi~~K~~AA~~~g~kifLIP~Gq~~-~~d~~~Y~k~~gl~vieV 197 (579)
T COG1750 119 GYMTVAIYAALMGWSIRKDVMMTGMINPDGSIGPVGGILEKLEAAAKAGAKIFLIPVGQRI-VVDLVEYGKSLGLKVIEV 197 (579)
T ss_pred hHhHHHHHHHHhCCCcccCeeeeeeecCCCccccccchHHHHHHHHhCCCeEEEeeccccc-cccHHHHHhhcceEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999988 44433322 458999999
Q ss_pred CCHHHHHHHHHcCC
Q 004834 706 KRMEDVLEQAFEGG 719 (728)
Q Consensus 706 ~~~~e~~~~~~~~~ 719 (728)
.++.|++.++....
T Consensus 198 ~~~~~aiyy~tg~~ 211 (579)
T COG1750 198 GTLEDAAYYLTGPQ 211 (579)
T ss_pred echhhhhhhhcccc
Confidence 99999999865443
No 91
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=6e-15 Score=166.53 Aligned_cols=191 Identities=18% Similarity=0.212 Sum_probs=132.7
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE------EecCC-----------c
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR------ISLGG-----------V 276 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~------i~~~~-----------~ 276 (728)
+++||+.+++.+...+... ..++.+||+|||||||||+|+++|+.+++.... ..|+. .
T Consensus 22 dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h 96 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNH 96 (507)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCC
Confidence 6899999999888766532 235689999999999999999999999653210 00110 0
Q ss_pred cchhhhccCccccccCCcchHHHHH---hhcCC--CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCee
Q 004834 277 KDEADIRGHRRTYIGSMPGRLIDGL---KRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVP 351 (728)
Q Consensus 277 ~~~s~l~g~~~~yvG~~~g~l~~~~---~~a~~--~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~ 351 (728)
.+..++-+.....+ ..+.+.+ ...+. ...|++|||++.+.... +++|+..|++.
T Consensus 97 ~Dv~eidaas~~~v----d~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a----~naLLk~LEep------------- 155 (507)
T PRK06645 97 PDIIEIDAASKTSV----DDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGA----FNALLKTLEEP------------- 155 (507)
T ss_pred CcEEEeeccCCCCH----HHHHHHHHHHHhccccCCcEEEEEEChhhcCHHH----HHHHHHHHhhc-------------
Confidence 01111111111111 2233333 22222 23499999999997654 89999998742
Q ss_pred ecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHccccc
Q 004834 352 FDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 431 (728)
Q Consensus 352 ~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~ 431 (728)
...++||++|+....+++++++||..+.|.+++.++...+++..+. . .++.++++++..++..+. .
T Consensus 156 --p~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~-----~-----egi~ie~eAL~~Ia~~s~--G 221 (507)
T PRK06645 156 --PPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITK-----Q-----ENLKTDIEALRIIAYKSE--G 221 (507)
T ss_pred --CCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHH-----H-----cCCCCCHHHHHHHHHHcC--C
Confidence 2356788888888899999999999999999999999999888752 2 247889999999998654 4
Q ss_pred chHHHHHHHHHHH
Q 004834 432 GVRNLERNLAALA 444 (728)
Q Consensus 432 G~R~L~~~I~~l~ 444 (728)
++|..-+.+++++
T Consensus 222 slR~al~~Ldkai 234 (507)
T PRK06645 222 SARDAVSILDQAA 234 (507)
T ss_pred CHHHHHHHHHHHH
Confidence 6777777777765
No 92
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=6.9e-15 Score=171.51 Aligned_cols=191 Identities=23% Similarity=0.259 Sum_probs=127.7
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE-E-EecCCc-----------cchh
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI-R-ISLGGV-----------KDEA 280 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~-~-i~~~~~-----------~~~s 280 (728)
+++||+.+++.+..++...++ ++.+||+||||||||++|+++|+.+++... . ..|+.- .+..
T Consensus 17 dIIGQe~Iv~~LknaI~~~rl-----~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 17 QMVGQSHVLHALTNALTQQRL-----HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred HhcCcHHHHHHHHHHHHhCCC-----CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 689999999998887764322 334699999999999999999999976421 0 011100 0000
Q ss_pred hhccCccccccCCcchHHHHHhhcCC--CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcE
Q 004834 281 DIRGHRRTYIGSMPGRLIDGLKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 358 (728)
Q Consensus 281 ~l~g~~~~yvG~~~g~l~~~~~~a~~--~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi 358 (728)
++-+....-+.. ...+.+.+...+. ...|+||||++++.... +++||..|++- ..++.
T Consensus 92 EidAas~~kVDd-IReLie~v~~~P~~gk~KViIIDEAh~LT~eA----qNALLKtLEEP---------------P~~vr 151 (944)
T PRK14949 92 EVDAASRTKVDD-TRELLDNVQYRPSRGRFKVYLIDEVHMLSRSS----FNALLKTLEEP---------------PEHVK 151 (944)
T ss_pred EeccccccCHHH-HHHHHHHHHhhhhcCCcEEEEEechHhcCHHH----HHHHHHHHhcc---------------CCCeE
Confidence 110100000000 0122333332222 23499999999998766 99999999852 23467
Q ss_pred EEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHH
Q 004834 359 FVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLER 438 (728)
Q Consensus 359 ~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~ 438 (728)
||++||....+.+.+++||.++.|.+++.++....+++.+.. .++.++++++..|+.... ..+|..-+
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~----------EgI~~edeAL~lIA~~S~--Gd~R~ALn 219 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ----------EQLPFEAEALTLLAKAAN--GSMRDALS 219 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH----------cCCCCCHHHHHHHHHHcC--CCHHHHHH
Confidence 888888888999999999999999999999999888776421 247889999999987543 34555444
Q ss_pred HHH
Q 004834 439 NLA 441 (728)
Q Consensus 439 ~I~ 441 (728)
.+.
T Consensus 220 LLd 222 (944)
T PRK14949 220 LTD 222 (944)
T ss_pred HHH
Confidence 443
No 93
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=9.1e-15 Score=160.48 Aligned_cols=195 Identities=21% Similarity=0.223 Sum_probs=128.2
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE--EecCC-----------ccch
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR--ISLGG-----------VKDE 279 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~--i~~~~-----------~~~~ 279 (728)
++++||+.+++.+...+.... -++.++|+|||||||||+|+++|+.+...... -.|+. ..+.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 378999999999888775322 23457999999999999999999998643210 00110 0011
Q ss_pred hhhccCccccccCCcchHHHHHhhcCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 280 ADIRGHRRTYIGSMPGRLIDGLKRVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 280 s~l~g~~~~yvG~~~g~l~~~~~~a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
.++.+..+..+.. ...+.+.+...+.. ..|++|||+|++.... +++|+..+++. ..++
T Consensus 91 ~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a----~naLLk~lEe~---------------~~~~ 150 (363)
T PRK14961 91 IEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHS----FNALLKTLEEP---------------PQHI 150 (363)
T ss_pred EEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHH----HHHHHHHHhcC---------------CCCe
Confidence 0110000000000 01222233323322 2499999999997654 78999998742 1345
Q ss_pred EEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHH
Q 004834 358 IFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 437 (728)
Q Consensus 358 i~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~ 437 (728)
.||++|+..+.+++++++||..+.|++++.++..++++..+. .. ++.++++++..++.... .++|...
T Consensus 151 ~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~-----~~-----g~~i~~~al~~ia~~s~--G~~R~al 218 (363)
T PRK14961 151 KFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILI-----KE-----SIDTDEYALKLIAYHAH--GSMRDAL 218 (363)
T ss_pred EEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHHHHcC--CCHHHHH
Confidence 677888888889999999999999999999999988887642 22 36789999999988653 3466665
Q ss_pred HHHHHHH
Q 004834 438 RNLAALA 444 (728)
Q Consensus 438 ~~I~~l~ 444 (728)
+.+++.+
T Consensus 219 ~~l~~~~ 225 (363)
T PRK14961 219 NLLEHAI 225 (363)
T ss_pred HHHHHHH
Confidence 6655554
No 94
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=7.3e-15 Score=164.59 Aligned_cols=196 Identities=19% Similarity=0.239 Sum_probs=134.0
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEE--ecC-----------Cccch
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRI--SLG-----------GVKDE 279 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i--~~~-----------~~~~~ 279 (728)
.+++||+.+++.+..++.... -++.+||+|||||||||+|+.+|+.+++....- .|+ ...+.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 378999999998887765332 345799999999999999999999885432110 010 01111
Q ss_pred hhhccCccccccCCcchHHHHHhhcCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 280 ADIRGHRRTYIGSMPGRLIDGLKRVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 280 s~l~g~~~~yvG~~~g~l~~~~~~a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
-++-+....-+.. -..+.+.....+.. ..|++|||+|.++... +++|+..|++- ...+
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A----~NaLLK~LEeP---------------p~~v 147 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYLPISSKFKVYIIDEVHMLSNSA----FNALLKTLEEP---------------APHV 147 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhccccCCceEEEEeChHhCCHHH----HHHHHHHHhCC---------------CCCe
Confidence 1111111000100 01222333333322 2399999999997754 89999999852 2346
Q ss_pred EEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHH
Q 004834 358 IFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 437 (728)
Q Consensus 358 i~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~ 437 (728)
.||++|+....+++.+++||..+.|.+++.++....+...+. +.++.++++++..|++... .++|...
T Consensus 148 ~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~----------~Egi~i~~eAL~lIa~~s~--GslR~al 215 (491)
T PRK14964 148 KFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAK----------KENIEHDEESLKLIAENSS--GSMRNAL 215 (491)
T ss_pred EEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcC--CCHHHHH
Confidence 788888888899999999999999999999998888877632 2347899999999998764 5677777
Q ss_pred HHHHHHHH
Q 004834 438 RNLAALAR 445 (728)
Q Consensus 438 ~~I~~l~r 445 (728)
+.+++++.
T Consensus 216 slLdqli~ 223 (491)
T PRK14964 216 FLLEQAAI 223 (491)
T ss_pred HHHHHHHH
Confidence 77777663
No 95
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.61 E-value=2.4e-14 Score=151.76 Aligned_cols=148 Identities=24% Similarity=0.265 Sum_probs=114.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCcccc--cc-----CCcchHHHHHhhcCCCCcEEE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTY--IG-----SMPGRLIDGLKRVGVCNPVML 312 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~y--vG-----~~~g~l~~~~~~a~~~~~Vll 312 (728)
+.+++|.||||||||++++.+|..++.++++++++...+..++.|+.... -| ..+|.+..+++. +.++|
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~----g~ill 139 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQH----NVALC 139 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhC----CeEEE
Confidence 45699999999999999999999999999999999999999999875211 11 123555555442 45899
Q ss_pred EecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCC-CcEEEEecCCCC------------CCChhhhCCee-
Q 004834 313 LDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS-KVIFVATANRAQ------------PIPPPLLDRME- 378 (728)
Q Consensus 313 lDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~-~vi~I~TtN~~~------------~l~~~Ll~R~~- 378 (728)
+||+|.+.++. ++.|+.+||.+..-...+ .+..+... ++.+|+|+|... .+++++++||.
T Consensus 140 lDEin~a~p~~----~~~L~~lLE~~~~l~i~~--~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i 213 (327)
T TIGR01650 140 FDEYDAGRPDV----MFVIQRVLEAGGKLTLLD--QNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSI 213 (327)
T ss_pred echhhccCHHH----HHHHHHHhccCCeEEECC--CceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheee
Confidence 99999998887 899999998532111111 24555444 678999999853 57999999997
Q ss_pred EEEcCCCCHHHHHHHHHHh
Q 004834 379 VIELPGYTPEEKLRIAMRH 397 (728)
Q Consensus 379 vI~~~~~t~ee~~~Il~~~ 397 (728)
++.++.|+.++..+|+...
T Consensus 214 ~~~~~Yp~~e~E~~Il~~~ 232 (327)
T TIGR01650 214 VTTLNYLEHDNEAAIVLAK 232 (327)
T ss_pred EeeCCCCCHHHHHHHHHhh
Confidence 5789999999999998765
No 96
>PRK04195 replication factor C large subunit; Provisional
Probab=99.60 E-value=1.8e-14 Score=164.08 Aligned_cols=200 Identities=23% Similarity=0.326 Sum_probs=139.3
Q ss_pred CCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 191 LPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 191 iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
++|.....+..++ +++|++++++.+..++..... ..+.+++||+||||||||++|+++|+.++.+++.
T Consensus 2 ~~W~eKyrP~~l~----------dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~~~~ie 69 (482)
T PRK04195 2 MPWVEKYRPKTLS----------DVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIE 69 (482)
T ss_pred CCchhhcCCCCHH----------HhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 5776655553333 589999999999998865431 2336789999999999999999999999999988
Q ss_pred EecCCccchhhhccCccccccCCcchHHHHHhhcC---CCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCC
Q 004834 271 ISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVG---VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHY 347 (728)
Q Consensus 271 i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~---~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~ 347 (728)
++.+.......+. .+++ ....... ....||+|||+|.++........++|+.+++.
T Consensus 70 lnasd~r~~~~i~----~~i~-------~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~---------- 128 (482)
T PRK04195 70 LNASDQRTADVIE----RVAG-------EAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK---------- 128 (482)
T ss_pred EcccccccHHHHH----HHHH-------HhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc----------
Confidence 8876543322111 0111 0111000 12359999999999763322336788888763
Q ss_pred CCeeecCCCcEEEEecCCCCCCCh-hhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHH
Q 004834 348 LNVPFDLSKVIFVATANRAQPIPP-PLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQR 426 (728)
Q Consensus 348 ~~~~~d~~~vi~I~TtN~~~~l~~-~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~ 426 (728)
.+..||+++|.+..+++ .|++||..|.|++|+.++...+++..+. .. ++.++++++..|++.
T Consensus 129 -------~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~-----~e-----gi~i~~eaL~~Ia~~ 191 (482)
T PRK04195 129 -------AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICR-----KE-----GIECDDEALKEIAER 191 (482)
T ss_pred -------CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHHHH
Confidence 12357788999888887 8899999999999999999998887642 22 467899999999987
Q ss_pred cccccchHHHHHHHHH
Q 004834 427 YTREAGVRNLERNLAA 442 (728)
Q Consensus 427 ~~~~~G~R~L~~~I~~ 442 (728)
..+ .+|..-+.++.
T Consensus 192 s~G--DlR~ain~Lq~ 205 (482)
T PRK04195 192 SGG--DLRSAINDLQA 205 (482)
T ss_pred cCC--CHHHHHHHHHH
Confidence 643 34444444433
No 97
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.3e-13 Score=143.24 Aligned_cols=226 Identities=19% Similarity=0.286 Sum_probs=134.2
Q ss_pred cCCCCccchhHHhcHHHHHHhhh------ccccchHHHHHHHHHHHHhhccC--CCCCCCEEEEEcCCCCChhHHHHHHH
Q 004834 190 DLPWEKASEEIDLDLKAAKERLD------SDHYGLVRVKQRIIEYLAVRKLK--PDARGPVLCFVGPPGVGKTSLASSIA 261 (728)
Q Consensus 190 ~iP~~~~~~~~~~~l~~~~~~L~------~~i~G~~~vk~~i~~~l~~~~~~--~~~~~~~lLL~GPpGtGKT~LakalA 261 (728)
..||.-......-.+...+.... .+++=.....++|.......... ...+-.+++||||||||||..|+.||
T Consensus 326 ~~pw~gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelA 405 (630)
T KOG0742|consen 326 RFPWIGSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELA 405 (630)
T ss_pred cCCCcccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHH
Confidence 47887655553333333222111 13343445556665543322211 12334589999999999999999999
Q ss_pred HHhCCCeEEEecCCccchhhhccCccccccCCc-chHHHHHhhcCCCC--cEEEEecccccCCCCCC-----CHHHHHHH
Q 004834 262 SALGRKFIRISLGGVKDEADIRGHRRTYIGSMP-GRLIDGLKRVGVCN--PVMLLDEIDKTGSDVRG-----DPASALLE 333 (728)
Q Consensus 262 ~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~-g~l~~~~~~a~~~~--~VlllDEidkl~~~~~~-----~~~~~Ll~ 333 (728)
...|..+-.+..+.+.- .|... ..+-+.|..+..++ -++||||.|.+..+++. +.-++|.-
T Consensus 406 r~SGlDYA~mTGGDVAP-----------lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNA 474 (630)
T KOG0742|consen 406 RHSGLDYAIMTGGDVAP-----------LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNA 474 (630)
T ss_pred hhcCCceehhcCCCccc-----------cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHH
Confidence 99998876555443211 22211 23445555554333 28999999988655422 11223322
Q ss_pred hcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCC---
Q 004834 334 VLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLG--- 409 (728)
Q Consensus 334 ~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~--- 409 (728)
+|=. -.| ..+.++++.+||.+..||.++-+|++ +|+|+.|..+|+.+++..||.+-+..- ...
T Consensus 475 lLfR-----TGd-------qSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~-~~~~~~ 541 (630)
T KOG0742|consen 475 LLFR-----TGD-------QSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKP-ATSGKP 541 (630)
T ss_pred HHHH-----hcc-------cccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCc-CCCCCC
Confidence 2210 011 13456888999999999999999997 899999999999999999874322111 010
Q ss_pred ----------cccccc----CHHHHHHHHHHcccccchHHHHHHHHHHH
Q 004834 410 ----------SEFLQI----PEAMVKLVIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 410 ----------~~~~~i----~d~~l~~l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
...+++ ++..+...+....+.+| |.|.+++
T Consensus 542 ~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSG-----REiakLv 585 (630)
T KOG0742|consen 542 GKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSG-----REIAKLV 585 (630)
T ss_pred chhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcH-----HHHHHHH
Confidence 012333 34555555555666666 6777766
No 98
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.60 E-value=1.4e-14 Score=161.70 Aligned_cols=182 Identities=22% Similarity=0.336 Sum_probs=128.3
Q ss_pred cccchHHHHHH---HHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccc
Q 004834 214 DHYGLVRVKQR---IIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYI 290 (728)
Q Consensus 214 ~i~G~~~vk~~---i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yv 290 (728)
+++|++++... +..++.. ...++++|+||||||||++|+++|+.++.+|..++.... ...++
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-~~~~i-------- 77 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-GVKDL-------- 77 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-cHHHH--------
Confidence 68999988655 6665532 345689999999999999999999999999988876531 11111
Q ss_pred cCCcchHHHHHhhc--CCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEe--cCCC
Q 004834 291 GSMPGRLIDGLKRV--GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVAT--ANRA 366 (728)
Q Consensus 291 G~~~g~l~~~~~~a--~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~T--tN~~ 366 (728)
..+.+..... .....|+||||+|.+.... ++.|+..++.. .+++|++ .|..
T Consensus 78 ----r~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~----q~~LL~~le~~-----------------~iilI~att~n~~ 132 (413)
T PRK13342 78 ----REVIEEARQRRSAGRRTILFIDEIHRFNKAQ----QDALLPHVEDG-----------------TITLIGATTENPS 132 (413)
T ss_pred ----HHHHHHHHHhhhcCCceEEEEechhhhCHHH----HHHHHHHhhcC-----------------cEEEEEeCCCChh
Confidence 1112221111 1134599999999997655 78899888731 2355554 3556
Q ss_pred CCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHH
Q 004834 367 QPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 367 ~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
..++++|++||.++.|++++.++...++++.+... ..++ +.++++++..+++.. ...+|.+.+.++..+
T Consensus 133 ~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~---~~~~----i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~ 201 (413)
T PRK13342 133 FEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDK---ERGL----VELDDEALDALARLA--NGDARRALNLLELAA 201 (413)
T ss_pred hhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHh---hcCC----CCCCHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 68999999999999999999999999988865321 1121 378999999998855 355677777776665
No 99
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1e-14 Score=167.87 Aligned_cols=191 Identities=21% Similarity=0.259 Sum_probs=128.0
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE--EEecCCc-----------cch
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI--RISLGGV-----------KDE 279 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~--~i~~~~~-----------~~~ 279 (728)
.+++||+.+++.+...+....+ .+.+||+||+||||||+|+.+|+.+++... .-.|+.- .+.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl-----~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRL-----HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 3789999999999887764332 334799999999999999999999976321 0111110 111
Q ss_pred hhhccCccccccCCcchHHHHHhhcCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 280 ADIRGHRRTYIGSMPGRLIDGLKRVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 280 s~l~g~~~~yvG~~~g~l~~~~~~a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
-++.+.....+.. -..+.+.+...+.. ..|+||||+|++.... +|+||..|++- ..++
T Consensus 91 ieidaas~~~Vdd-iR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a----~NALLKtLEEP---------------p~~v 150 (647)
T PRK07994 91 IEIDAASRTKVED-TRELLDNVQYAPARGRFKVYLIDEVHMLSRHS----FNALLKTLEEP---------------PEHV 150 (647)
T ss_pred eeecccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEechHhCCHHH----HHHHHHHHHcC---------------CCCe
Confidence 1111110000000 01223333333322 2399999999998765 99999999852 2456
Q ss_pred EEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHH
Q 004834 358 IFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 437 (728)
Q Consensus 358 i~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~ 437 (728)
.||++|+.+..+++.+++||..+.|.+++.++....+++.+. . .++.++++++..|+....+ .+|...
T Consensus 151 ~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~-----~-----e~i~~e~~aL~~Ia~~s~G--s~R~Al 218 (647)
T PRK07994 151 KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQ-----A-----EQIPFEPRALQLLARAADG--SMRDAL 218 (647)
T ss_pred EEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHH-----H-----cCCCCCHHHHHHHHHHcCC--CHHHHH
Confidence 788888889999999999999999999999999888877642 1 2367899999888875433 344444
Q ss_pred HHH
Q 004834 438 RNL 440 (728)
Q Consensus 438 ~~I 440 (728)
+.+
T Consensus 219 ~ll 221 (647)
T PRK07994 219 SLT 221 (647)
T ss_pred HHH
Confidence 444
No 100
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.59 E-value=9.5e-16 Score=142.74 Aligned_cols=120 Identities=36% Similarity=0.543 Sum_probs=91.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCC--CcEEEEecccccC
Q 004834 243 LCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVC--NPVMLLDEIDKTG 320 (728)
Q Consensus 243 lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~--~~VlllDEidkl~ 320 (728)
+||+||||||||++++.+|+.++.+++.++++...+ .+.+.....+...+..+... ++|++|||+|.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~ 71 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELIS---------SYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLF 71 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHT---------SSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccc---------ccccccccccccccccccccccceeeeeccchhcc
Confidence 689999999999999999999999999999876543 24555566777777765433 3699999999998
Q ss_pred CCC--CC-----CHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhh-CCee-EEEcC
Q 004834 321 SDV--RG-----DPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLL-DRME-VIELP 383 (728)
Q Consensus 321 ~~~--~~-----~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll-~R~~-vI~~~ 383 (728)
++. .. ...+.|+..++.... ..++++||+|||..+.++++++ +||+ .|+++
T Consensus 72 ~~~~~~~~~~~~~~~~~L~~~l~~~~~------------~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 72 PKSQPSSSSFEQRLLNQLLSLLDNPSS------------KNSRVIVIATTNSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp HHCSTSSSHHHHHHHHHHHHHHHTTTT------------TSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-
T ss_pred cccccccccccccccceeeeccccccc------------ccccceeEEeeCChhhCCHhHHhCCCcEEEEcC
Confidence 765 11 125667777764321 1356899999999999999999 9998 57765
No 101
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.6e-14 Score=165.89 Aligned_cols=195 Identities=21% Similarity=0.235 Sum_probs=130.8
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE-------EecCCccchhhh-ccC
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR-------ISLGGVKDEADI-RGH 285 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~-------i~~~~~~~~s~l-~g~ 285 (728)
+++||+.+++.+..++.... -++.+||+||+||||||+|+++|+.+++.... -.|+.-.+...+ .|.
T Consensus 17 dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGR 91 (618)
T ss_pred HhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCC
Confidence 68999999999999886443 23457999999999999999999999752100 011110000000 000
Q ss_pred ccccc---cC---CcchHHHHHh---hcCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecC
Q 004834 286 RRTYI---GS---MPGRLIDGLK---RVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDL 354 (728)
Q Consensus 286 ~~~yv---G~---~~g~l~~~~~---~a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~ 354 (728)
.+.|+ +. .-..+.+.+. ..+.. ..|++|||+|.++... +|+|+..|++. .
T Consensus 92 h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a----~NaLLKtLEEP---------------P 152 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTA----FNAMLKTLEEP---------------P 152 (618)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHH----HHHHHHhcccC---------------C
Confidence 00110 00 0112333332 22322 2399999999998765 89999999852 2
Q ss_pred CCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchH
Q 004834 355 SKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVR 434 (728)
Q Consensus 355 ~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R 434 (728)
..+.||++|+.+..+++.+++||.++.|..++.++....+++.+. . .++.++++++..|++... .++|
T Consensus 153 ~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~-----~-----egi~ie~~AL~~La~~s~--GslR 220 (618)
T PRK14951 153 EYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLA-----A-----ENVPAEPQALRLLARAAR--GSMR 220 (618)
T ss_pred CCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHH-----H-----cCCCCCHHHHHHHHHHcC--CCHH
Confidence 346788888888889999999999999999999999888877642 2 247889999999998654 4566
Q ss_pred HHHHHHHHHH
Q 004834 435 NLERNLAALA 444 (728)
Q Consensus 435 ~L~~~I~~l~ 444 (728)
.+.+.+.+.+
T Consensus 221 ~al~lLdq~i 230 (618)
T PRK14951 221 DALSLTDQAI 230 (618)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 102
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.8e-14 Score=163.63 Aligned_cols=193 Identities=19% Similarity=0.215 Sum_probs=130.1
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE--EecCC-----------ccchh
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR--ISLGG-----------VKDEA 280 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~--i~~~~-----------~~~~s 280 (728)
+++|++.+++.+...+.... ..+.++|+||||||||++|+.+|+.+.+.... -.|+. ..+.-
T Consensus 17 diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred HhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 68999999999888775322 23358999999999999999999998642110 00110 01111
Q ss_pred hhccCccccccCCc-chHHHHHhhcCC--CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 281 DIRGHRRTYIGSMP-GRLIDGLKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 281 ~l~g~~~~yvG~~~-g~l~~~~~~a~~--~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
++.+. ...|... ..+.+.+...+. ...|+||||+|++.... ++.|+..|++. ...+
T Consensus 92 eidaa--s~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a----~naLLK~LEep---------------p~~v 150 (546)
T PRK14957 92 EIDAA--SRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQS----FNALLKTLEEP---------------PEYV 150 (546)
T ss_pred Eeecc--cccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHH----HHHHHHHHhcC---------------CCCc
Confidence 11000 0111111 123333333332 23499999999998765 89999999852 1345
Q ss_pred EEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHH
Q 004834 358 IFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 437 (728)
Q Consensus 358 i~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~ 437 (728)
.||++|+....+++.+++||.++.|.+++.++....++..+. .. ++.++++++..++.... ..+|..-
T Consensus 151 ~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~-----~e-----gi~~e~~Al~~Ia~~s~--GdlR~al 218 (546)
T PRK14957 151 KFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILA-----KE-----NINSDEQSLEYIAYHAK--GSLRDAL 218 (546)
T ss_pred eEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHHHHcC--CCHHHHH
Confidence 777777778889999999999999999999998887777542 22 36889999999988653 4577777
Q ss_pred HHHHHHH
Q 004834 438 RNLAALA 444 (728)
Q Consensus 438 ~~I~~l~ 444 (728)
+.+++++
T Consensus 219 nlLek~i 225 (546)
T PRK14957 219 SLLDQAI 225 (546)
T ss_pred HHHHHHH
Confidence 7776654
No 103
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.59 E-value=1.7e-14 Score=149.97 Aligned_cols=156 Identities=21% Similarity=0.347 Sum_probs=109.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCC---eEEEecCCccchhhhccCccccccCCcchHHHHHhhcC------CCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRK---FIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVG------VCN 308 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~---~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~------~~~ 308 (728)
..-|.++|+||||||||+||+.|+.....+ |+.++.+.. ...+ +..+|..+. ...
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a-~t~d---------------vR~ife~aq~~~~l~krk 223 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA-KTND---------------VRDIFEQAQNEKSLTKRK 223 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-chHH---------------HHHHHHHHHHHHhhhcce
Confidence 456789999999999999999999988655 444443321 1122 222222221 123
Q ss_pred cEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEE--ecCCCCCCChhhhCCeeEEEcCCCC
Q 004834 309 PVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVA--TANRAQPIPPPLLDRMEVIELPGYT 386 (728)
Q Consensus 309 ~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~--TtN~~~~l~~~Ll~R~~vI~~~~~t 386 (728)
.|+|||||+++.... +..||..++. ..+++|+ |-|+...+..+|++||.++.+..++
T Consensus 224 TilFiDEiHRFNksQ----QD~fLP~VE~-----------------G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~ 282 (554)
T KOG2028|consen 224 TILFIDEIHRFNKSQ----QDTFLPHVEN-----------------GDITLIGATTENPSFQLNAALLSRCRVFVLEKLP 282 (554)
T ss_pred eEEEeHHhhhhhhhh----hhcccceecc-----------------CceEEEecccCCCccchhHHHHhccceeEeccCC
Confidence 599999999987765 6667766653 3457777 4477889999999999999999999
Q ss_pred HHHHHHHHHHhhc---hHHHhhcCCCccccccCHHHHHHHHHHcccc
Q 004834 387 PEEKLRIAMRHLI---PRVLDQHGLGSEFLQIPEAMVKLVIQRYTRE 430 (728)
Q Consensus 387 ~ee~~~Il~~~l~---~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~ 430 (728)
.++...|+.+-+. .....-.++.+..+.+++.++++++..+.+.
T Consensus 283 ~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGD 329 (554)
T KOG2028|consen 283 VNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGD 329 (554)
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCch
Confidence 9999999988542 1111122444445678999999999876654
No 104
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=1.8e-14 Score=170.93 Aligned_cols=191 Identities=19% Similarity=0.179 Sum_probs=132.1
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE--EecCC-------------ccc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR--ISLGG-------------VKD 278 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~--i~~~~-------------~~~ 278 (728)
+++||+.+++.|..++.... ..+.+||+||+|||||++|+.+|+.|.+.... -.|+. ..+
T Consensus 16 eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d 90 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD 90 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc
Confidence 78999999999988876432 23458999999999999999999999753210 01111 011
Q ss_pred hhhhccCccccccCCcchHHH---HHhhcCC--CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeec
Q 004834 279 EADIRGHRRTYIGSMPGRLID---GLKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD 353 (728)
Q Consensus 279 ~s~l~g~~~~yvG~~~g~l~~---~~~~a~~--~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d 353 (728)
..++-+... .| -..+.+ .+...+. ...|+||||+|+++... +|+||+.|++-
T Consensus 91 v~eidaas~--~~--Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a----~NaLLK~LEEp--------------- 147 (824)
T PRK07764 91 VTEIDAASH--GG--VDDARELRERAFFAPAESRYKIFIIDEAHMVTPQG----FNALLKIVEEP--------------- 147 (824)
T ss_pred EEEeccccc--CC--HHHHHHHHHHHHhchhcCCceEEEEechhhcCHHH----HHHHHHHHhCC---------------
Confidence 111111000 00 012222 1122222 23399999999998765 89999999852
Q ss_pred CCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccch
Q 004834 354 LSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGV 433 (728)
Q Consensus 354 ~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~ 433 (728)
..+++||++||..+.+.+.|++||.++.|..++.++...++++.+ +. .++.++++++..+++... ..+
T Consensus 148 P~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il-----~~-----EGv~id~eal~lLa~~sg--Gdl 215 (824)
T PRK07764 148 PEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERIC-----AQ-----EGVPVEPGVLPLVIRAGG--GSV 215 (824)
T ss_pred CCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHHcC--CCH
Confidence 235688888888889999999999999999999999988887764 22 246789999999988654 357
Q ss_pred HHHHHHHHHHH
Q 004834 434 RNLERNLAALA 444 (728)
Q Consensus 434 R~L~~~I~~l~ 444 (728)
|...+.|+++|
T Consensus 216 R~Al~eLEKLi 226 (824)
T PRK07764 216 RDSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHHHH
Confidence 77778888776
No 105
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.58 E-value=2.7e-14 Score=154.06 Aligned_cols=202 Identities=19% Similarity=0.254 Sum_probs=135.6
Q ss_pred cCCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 190 DLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 190 ~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
.+||.....+..++ +++|++++++.+..++... ..+..++|+||||+|||++|+++++.++.++.
T Consensus 8 ~~~w~~kyrP~~~~----------~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~ 72 (316)
T PHA02544 8 EFMWEQKYRPSTID----------ECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVL 72 (316)
T ss_pred CCcceeccCCCcHH----------HhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence 46787666663443 6899999999998887521 22335556899999999999999999988888
Q ss_pred EEecCCccchhhhccCccccccCCcchHHHHHhhcC--CCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCC
Q 004834 270 RISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVG--VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHY 347 (728)
Q Consensus 270 ~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~--~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~ 347 (728)
.++++. .....+ ...+.......+ ....|++|||+|.+.... .++.|...++..
T Consensus 73 ~i~~~~-~~~~~i-----------~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~---~~~~L~~~le~~--------- 128 (316)
T PHA02544 73 FVNGSD-CRIDFV-----------RNRLTRFASTVSLTGGGKVIIIDEFDRLGLAD---AQRHLRSFMEAY--------- 128 (316)
T ss_pred EeccCc-ccHHHH-----------HHHHHHHHHhhcccCCCeEEEEECcccccCHH---HHHHHHHHHHhc---------
Confidence 777654 111111 011222222111 124599999999984322 256676667631
Q ss_pred CCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHc
Q 004834 348 LNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRY 427 (728)
Q Consensus 348 ~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~ 427 (728)
.+++.||+|+|....+++++++||..+.|+.|+.+++..+++..+.. .... +...++.++++++.++++.+
T Consensus 129 ------~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~-~~~~--~~~~~~~i~~~al~~l~~~~ 199 (316)
T PHA02544 129 ------SKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVR-CKGI--LEAEGVEVDMKVLAALVKKN 199 (316)
T ss_pred ------CCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHH-HHHH--HHhcCCCCCHHHHHHHHHhc
Confidence 13467889999999999999999999999999999999888765422 1111 12235788999999999855
Q ss_pred ccccchHHHHHHHH
Q 004834 428 TREAGVRNLERNLA 441 (728)
Q Consensus 428 ~~~~G~R~L~~~I~ 441 (728)
. .+.|.+-..++
T Consensus 200 ~--~d~r~~l~~l~ 211 (316)
T PHA02544 200 F--PDFRRTINELQ 211 (316)
T ss_pred C--CCHHHHHHHHH
Confidence 4 34454443343
No 106
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=1.9e-14 Score=164.81 Aligned_cols=195 Identities=19% Similarity=0.212 Sum_probs=131.3
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE--EecCC-------------ccc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR--ISLGG-------------VKD 278 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~--i~~~~-------------~~~ 278 (728)
+++||+.+++.+..++.... .++.+||+||+||||||+|+++|+.+.+.... -.|+. ..+
T Consensus 14 eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~d 88 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSID 88 (584)
T ss_pred HhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCce
Confidence 78999999999998876322 23347999999999999999999998753110 01110 001
Q ss_pred hhhhccCccccccCCcchHHHHHhhcCC--CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCC
Q 004834 279 EADIRGHRRTYIGSMPGRLIDGLKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 356 (728)
Q Consensus 279 ~s~l~g~~~~yvG~~~g~l~~~~~~a~~--~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~ 356 (728)
.-++-+....-+... ..+.+.+...+. ...|+||||+|.++... +|+||..|++- ..+
T Consensus 89 vieidaas~~gvd~i-Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A----~NALLK~LEEp---------------p~~ 148 (584)
T PRK14952 89 VVELDAASHGGVDDT-RELRDRAFYAPAQSRYRIFIVDEAHMVTTAG----FNALLKIVEEP---------------PEH 148 (584)
T ss_pred EEEeccccccCHHHH-HHHHHHHHhhhhcCCceEEEEECCCcCCHHH----HHHHHHHHhcC---------------CCC
Confidence 111111000000000 112222222332 23499999999998765 89999999852 245
Q ss_pred cEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHH
Q 004834 357 VIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 436 (728)
Q Consensus 357 vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L 436 (728)
++||++|+.+..+.+++++||..+.|..++.++..+.+...+ +.. ++.++++++..+++... .++|..
T Consensus 149 ~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~-----~~e-----gi~i~~~al~~Ia~~s~--GdlR~a 216 (584)
T PRK14952 149 LIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARIC-----EQE-----GVVVDDAVYPLVIRAGG--GSPRDT 216 (584)
T ss_pred eEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHHcC--CCHHHH
Confidence 688888888899999999999999999999999888887764 222 36789999999887443 457777
Q ss_pred HHHHHHHHH
Q 004834 437 ERNLAALAR 445 (728)
Q Consensus 437 ~~~I~~l~r 445 (728)
.+.+++++.
T Consensus 217 ln~Ldql~~ 225 (584)
T PRK14952 217 LSVLDQLLA 225 (584)
T ss_pred HHHHHHHHh
Confidence 777777653
No 107
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.58 E-value=1.7e-14 Score=173.10 Aligned_cols=188 Identities=21% Similarity=0.285 Sum_probs=133.9
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC----------CCeEEEecCCccchhhh
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG----------RKFIRISLGGVKDEADI 282 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~----------~~~~~i~~~~~~~~s~l 282 (728)
..++|+++.++++.+.+.. ....+++|+||||||||++++.+|+.+. ..++.++++....
T Consensus 187 d~~iGr~~ei~~~i~~l~r------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a---- 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLR------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA---- 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhc------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc----
Confidence 4789999998888887643 2345789999999999999999999873 2344444443221
Q ss_pred ccCccccccCCcchHHHHHhhcCC--CCcEEEEecccccCCCC----CCCHHHHHHHhcCcccccccccCCCCeeecCCC
Q 004834 283 RGHRRTYIGSMPGRLIDGLKRVGV--CNPVMLLDEIDKTGSDV----RGDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 356 (728)
Q Consensus 283 ~g~~~~yvG~~~g~l~~~~~~a~~--~~~VlllDEidkl~~~~----~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~ 356 (728)
...|.|..+.++.+.+..... .+.|+|||||+.+.... ..|..+.|+..|.. +.
T Consensus 257 ---g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-----------------G~ 316 (852)
T TIGR03345 257 ---GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-----------------GE 316 (852)
T ss_pred ---ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-----------------CC
Confidence 124677777777777765432 34699999999997632 23344566666652 34
Q ss_pred cEEEEecCCC-----CCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHccccc
Q 004834 357 VIFVATANRA-----QPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 431 (728)
Q Consensus 357 vi~I~TtN~~-----~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~ 431 (728)
+.+|+||+.. ...+++|++||.+|.++.|+.++...|++.. .+.....++ +.++|+++..+++...++.
T Consensus 317 l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~-~~~~e~~~~-----v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 317 LRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL-APVLEKHHG-----VLILDEAVVAAVELSHRYI 390 (852)
T ss_pred eEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH-HHhhhhcCC-----CeeCHHHHHHHHHHccccc
Confidence 5788888764 3589999999999999999999999998543 333333333 7899999999988666555
Q ss_pred chHHH
Q 004834 432 GVRNL 436 (728)
Q Consensus 432 G~R~L 436 (728)
+-|.|
T Consensus 391 ~~r~L 395 (852)
T TIGR03345 391 PGRQL 395 (852)
T ss_pred ccccC
Confidence 55554
No 108
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.58 E-value=3.5e-14 Score=153.98 Aligned_cols=171 Identities=33% Similarity=0.432 Sum_probs=123.1
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhc
Q 004834 204 LKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIR 283 (728)
Q Consensus 204 l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~ 283 (728)
.......+...++|.++++..+...+. .+.+++|.||||||||++|+++|+.++.+|.++.|+....++++.
T Consensus 15 ~~~~~~~~~~~~~g~~~~~~~~l~a~~--------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~ 86 (329)
T COG0714 15 LGKIRSELEKVVVGDEEVIELALLALL--------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLL 86 (329)
T ss_pred HHHHHhhcCCeeeccHHHHHHHHHHHH--------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhc
Confidence 444556677778998888888777663 355799999999999999999999999999999999988999988
Q ss_pred cCcccc--------ccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCC
Q 004834 284 GHRRTY--------IGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS 355 (728)
Q Consensus 284 g~~~~y--------vG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~ 355 (728)
|..--. .-...|.+....+ +|+|+|||+++.++. +++|+++|++.+... ....- +.+.
T Consensus 87 G~~~~~~~~~~~~~~~~~~gpl~~~~~------~ill~DEInra~p~~----q~aLl~~l~e~~vtv---~~~~~-~~~~ 152 (329)
T COG0714 87 GTYAYAALLLEPGEFRFVPGPLFAAVR------VILLLDEINRAPPEV----QNALLEALEERQVTV---PGLTT-IRLP 152 (329)
T ss_pred CchhHhhhhccCCeEEEecCCcccccc------eEEEEeccccCCHHH----HHHHHHHHhCcEEEE---CCcCC-cCCC
Confidence 754111 1112233332222 499999999999988 999999999865422 11110 3333
Q ss_pred -CcEEEEecCC-----CCCCChhhhCCee-EEEcCCCCH-HHHHHHHHH
Q 004834 356 -KVIFVATANR-----AQPIPPPLLDRME-VIELPGYTP-EEKLRIAMR 396 (728)
Q Consensus 356 -~vi~I~TtN~-----~~~l~~~Ll~R~~-vI~~~~~t~-ee~~~Il~~ 396 (728)
.+++|+|+|. ...+++++++||. .+.++.|.. ++...+..+
T Consensus 153 ~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 153 PPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILAR 201 (329)
T ss_pred CCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHh
Confidence 4678889994 4578999999994 688888844 444444433
No 109
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.58 E-value=9.1e-16 Score=139.99 Aligned_cols=124 Identities=31% Similarity=0.468 Sum_probs=79.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecccccCC
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGS 321 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~ 321 (728)
|+||.|+||+|||++|+++|+.++..|.||.++....++++.|.. +.....+.. .+...+....|+|+|||+.+.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~--v~~~~~~~f--~~~~GPif~~ill~DEiNrapp 76 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFP--VYDQETGEF--EFRPGPIFTNILLADEINRAPP 76 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEE--EEETTTTEE--EEEE-TT-SSEEEEETGGGS-H
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeee--eeccCCCee--EeecChhhhceeeecccccCCH
Confidence 689999999999999999999999999999998878899999874 111111111 1233344456999999999999
Q ss_pred CCCCCHHHHHHHhcCcccccccccCCCCeeecCCC-cEEEEecCCCC-----CCChhhhCCee
Q 004834 322 DVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSK-VIFVATANRAQ-----PIPPPLLDRME 378 (728)
Q Consensus 322 ~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~-vi~I~TtN~~~-----~l~~~Ll~R~~ 378 (728)
+. +++||++|.+++... .|..+.+.. +++|+|.|+.+ .+|++++|||-
T Consensus 77 kt----QsAlLeam~Er~Vt~-----~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 77 KT----QSALLEAMEERQVTI-----DGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp HH----HHHHHHHHHHSEEEE-----TTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred HH----HHHHHHHHHcCeEEe-----CCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 88 999999999876542 234445443 68899999976 79999999984
No 110
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=1.1e-14 Score=166.11 Aligned_cols=192 Identities=21% Similarity=0.266 Sum_probs=129.6
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE--EecCC-----------ccchh
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR--ISLGG-----------VKDEA 280 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~--i~~~~-----------~~~~s 280 (728)
+++|++.+++.+..++.... -.+.+||+||||||||++|+.+|+.+.+.... ..|+. ..+..
T Consensus 17 dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~ 91 (624)
T PRK14959 17 EVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVV 91 (624)
T ss_pred HhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 68999999999988886432 24689999999999999999999999653110 01111 11111
Q ss_pred hhccCccccccCCcchHHHHHhhcCC--CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcE
Q 004834 281 DIRGHRRTYIGSMPGRLIDGLKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 358 (728)
Q Consensus 281 ~l~g~~~~yvG~~~g~l~~~~~~a~~--~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi 358 (728)
++.+.....+.. ...+.+.+...+. ...|+||||+|++.... ++.|+..|++. ..+++
T Consensus 92 eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a----~naLLk~LEEP---------------~~~~i 151 (624)
T PRK14959 92 EIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREA----FNALLKTLEEP---------------PARVT 151 (624)
T ss_pred EEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHH----HHHHHHHhhcc---------------CCCEE
Confidence 111111000100 0123333333322 22499999999997665 89999999742 13468
Q ss_pred EEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHH
Q 004834 359 FVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLER 438 (728)
Q Consensus 359 ~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~ 438 (728)
||++||....+.+.+++||.+|.|++++.++...+++..+ +.. ++.++++++..+++... .++|..-+
T Consensus 152 fILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il-----~~e-----gi~id~eal~lIA~~s~--GdlR~Al~ 219 (624)
T PRK14959 152 FVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVL-----GRE-----GVDYDPAAVRLIARRAA--GSVRDSMS 219 (624)
T ss_pred EEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHHcC--CCHHHHHH
Confidence 8899999999999999999999999999999998887753 222 36789999999987543 34665555
Q ss_pred HHHH
Q 004834 439 NLAA 442 (728)
Q Consensus 439 ~I~~ 442 (728)
.+++
T Consensus 220 lLeq 223 (624)
T PRK14959 220 LLGQ 223 (624)
T ss_pred HHHH
Confidence 5554
No 111
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=3.7e-14 Score=160.78 Aligned_cols=193 Identities=24% Similarity=0.285 Sum_probs=129.8
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE-EEecCCc-----------cchhh
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI-RISLGGV-----------KDEAD 281 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~-~i~~~~~-----------~~~s~ 281 (728)
+++||+++++.+..++.... .++.+||+|||||||||+|+++|+.+.+... ...|+.- .+..+
T Consensus 15 dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~e 89 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLE 89 (504)
T ss_pred HhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEE
Confidence 68999999999998876432 2345699999999999999999999854210 0011110 01111
Q ss_pred hccCccccccCC-cchHHHHHhhcCC--CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcE
Q 004834 282 IRGHRRTYIGSM-PGRLIDGLKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 358 (728)
Q Consensus 282 l~g~~~~yvG~~-~g~l~~~~~~a~~--~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi 358 (728)
+.+. ...|.. ...+.+.+...+. ...|++|||+|.+.... ++.|+..|+.. ..+++
T Consensus 90 l~~~--~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a----~naLLk~LEep---------------~~~t~ 148 (504)
T PRK14963 90 IDAA--SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSA----FNALLKTLEEP---------------PEHVI 148 (504)
T ss_pred eccc--ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHH----HHHHHHHHHhC---------------CCCEE
Confidence 1100 000000 0112222222222 23499999999886544 88899988742 23467
Q ss_pred EEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHH
Q 004834 359 FVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLER 438 (728)
Q Consensus 359 ~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~ 438 (728)
||+++|.+..+++.+.+||..+.|.+++.++....++..+ +.. ++.++++++..+++... ..+|.+.+
T Consensus 149 ~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~-----~~e-----gi~i~~~Al~~ia~~s~--GdlR~aln 216 (504)
T PRK14963 149 FILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLL-----EAE-----GREAEPEALQLVARLAD--GAMRDAES 216 (504)
T ss_pred EEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHHcC--CCHHHHHH
Confidence 8888898899999999999999999999999998888764 222 46789999999998654 45677777
Q ss_pred HHHHHH
Q 004834 439 NLAALA 444 (728)
Q Consensus 439 ~I~~l~ 444 (728)
.+++++
T Consensus 217 ~Lekl~ 222 (504)
T PRK14963 217 LLERLL 222 (504)
T ss_pred HHHHHH
Confidence 777665
No 112
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.57 E-value=1.5e-14 Score=172.23 Aligned_cols=187 Identities=21% Similarity=0.295 Sum_probs=135.2
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh----------CCCeEEEecCCccchhhhc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEADIR 283 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l----------~~~~~~i~~~~~~~~s~l~ 283 (728)
.++|+++..+++.+.+.. ....+++|+||||||||++++.+|+.+ +..++.++++....
T Consensus 183 ~~igr~~ei~~~~~~L~~------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a----- 251 (731)
T TIGR02639 183 PLIGREDELERTIQVLCR------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLA----- 251 (731)
T ss_pred cccCcHHHHHHHHHHHhc------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhh-----
Confidence 789999999988877643 234578999999999999999999987 44556665443221
Q ss_pred cCccccccCCcchHHHHHhhcCC-CCcEEEEecccccCCCCC---C--CHHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 284 GHRRTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVR---G--DPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 284 g~~~~yvG~~~g~l~~~~~~a~~-~~~VlllDEidkl~~~~~---~--~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
| .+|.|..+.++...+..+.. .+.|+||||+|.+..... + +.++.|...|+. +.+
T Consensus 252 ~--~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-----------------g~i 312 (731)
T TIGR02639 252 G--TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-----------------GKL 312 (731)
T ss_pred h--ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-----------------CCe
Confidence 1 14677777788888776532 345999999999975421 1 235566665542 346
Q ss_pred EEEEecCCC-----CCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccc
Q 004834 358 IFVATANRA-----QPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAG 432 (728)
Q Consensus 358 i~I~TtN~~-----~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G 432 (728)
.+|++||.. ...+++|.+||..|.++.|+.++..+|++.... +....+ .+.++++++.++++...++.+
T Consensus 313 ~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~-~~e~~~-----~v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 313 RCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKE-KYEEFH-----HVKYSDEALEAAVELSARYIN 386 (731)
T ss_pred EEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHH-HHHhcc-----CcccCHHHHHHHHHhhhcccc
Confidence 788988863 357999999999999999999999999997642 222223 368999999999986555555
Q ss_pred hHHH
Q 004834 433 VRNL 436 (728)
Q Consensus 433 ~R~L 436 (728)
-|.+
T Consensus 387 ~r~~ 390 (731)
T TIGR02639 387 DRFL 390 (731)
T ss_pred cccC
Confidence 5544
No 113
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=2.1e-14 Score=164.56 Aligned_cols=192 Identities=19% Similarity=0.213 Sum_probs=133.7
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE--EecC-----------Cccchh
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR--ISLG-----------GVKDEA 280 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~--i~~~-----------~~~~~s 280 (728)
+++|++.+++.+..++... ..+..+||+||+|||||++|+++|+.+++.... ..|+ ...+.-
T Consensus 17 dIIGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred HHcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE
Confidence 7899999999999987643 234568999999999999999999998654211 0111 111111
Q ss_pred hhccCccccccCCcchHHHHHhh---cCC--CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCC
Q 004834 281 DIRGHRRTYIGSMPGRLIDGLKR---VGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS 355 (728)
Q Consensus 281 ~l~g~~~~yvG~~~g~l~~~~~~---a~~--~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~ 355 (728)
++-+.... .-..+.+.+.. .+. ...|+||||+|.+.... +++|+..|++. ..
T Consensus 92 EidaAs~~----gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A----~NALLKtLEEP---------------p~ 148 (709)
T PRK08691 92 EIDAASNT----GIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSA----FNAMLKTLEEP---------------PE 148 (709)
T ss_pred EEeccccC----CHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHH----HHHHHHHHHhC---------------CC
Confidence 11111000 11233333332 221 12499999999987654 89999999842 23
Q ss_pred CcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHH
Q 004834 356 KVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 435 (728)
Q Consensus 356 ~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~ 435 (728)
++.||++||....+++.+++||..+.|..++.++....+++.+ +. .++.++++++..|++... .++|.
T Consensus 149 ~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il-----~k-----Egi~id~eAL~~Ia~~A~--GslRd 216 (709)
T PRK08691 149 HVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVL-----DS-----EKIAYEPPALQLLGRAAA--GSMRD 216 (709)
T ss_pred CcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHH-----HH-----cCCCcCHHHHHHHHHHhC--CCHHH
Confidence 4678888999999999999999999999999999988888764 22 347899999999998653 56777
Q ss_pred HHHHHHHHHH
Q 004834 436 LERNLAALAR 445 (728)
Q Consensus 436 L~~~I~~l~r 445 (728)
+.+.+++++.
T Consensus 217 AlnLLDqaia 226 (709)
T PRK08691 217 ALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHH
Confidence 7777766553
No 114
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=4.9e-14 Score=162.15 Aligned_cols=193 Identities=20% Similarity=0.258 Sum_probs=131.3
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE--EEecCCc-----------cchh
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI--RISLGGV-----------KDEA 280 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~--~i~~~~~-----------~~~s 280 (728)
+++||+.+++.+...+... ..++.+||+||+|||||++|+.+|+.+.+.-. ...|+.- .+..
T Consensus 17 ~viGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~ 91 (559)
T PRK05563 17 DVVGQEHITKTLKNAIKQG-----KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVI 91 (559)
T ss_pred hccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeE
Confidence 7899999999998887643 23456899999999999999999999864321 0011110 1111
Q ss_pred hhccCccccccCC-cchHHHHHhhcCCCC--cEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 281 DIRGHRRTYIGSM-PGRLIDGLKRVGVCN--PVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 281 ~l~g~~~~yvG~~-~g~l~~~~~~a~~~~--~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
++-+. ...|.. -..+.+.+...+... .|++|||+|.+.... +++|+..|++. ..++
T Consensus 92 eidaa--s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a----~naLLKtLEep---------------p~~~ 150 (559)
T PRK05563 92 EIDAA--SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGA----FNALLKTLEEP---------------PAHV 150 (559)
T ss_pred Eeecc--ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHH----HHHHHHHhcCC---------------CCCe
Confidence 11110 000100 012223333333322 399999999997654 89999999742 2356
Q ss_pred EEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHH
Q 004834 358 IFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 437 (728)
Q Consensus 358 i~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~ 437 (728)
+||++|+.+..+++.+++||..+.|.+++.++...+++..+ +.. ++.++++++..+++... .++|...
T Consensus 151 ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~-----~~e-----gi~i~~~al~~ia~~s~--G~~R~al 218 (559)
T PRK05563 151 IFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYIL-----DKE-----GIEYEDEALRLIARAAE--GGMRDAL 218 (559)
T ss_pred EEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHHcC--CCHHHHH
Confidence 88888888899999999999999999999999888887764 222 46789999999988654 4677766
Q ss_pred HHHHHHH
Q 004834 438 RNLAALA 444 (728)
Q Consensus 438 ~~I~~l~ 444 (728)
+.+++++
T Consensus 219 ~~Ldq~~ 225 (559)
T PRK05563 219 SILDQAI 225 (559)
T ss_pred HHHHHHH
Confidence 6666554
No 115
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.56 E-value=2.2e-14 Score=168.33 Aligned_cols=190 Identities=20% Similarity=0.276 Sum_probs=131.2
Q ss_pred cccchHHHHH---HHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccc
Q 004834 214 DHYGLVRVKQ---RIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYI 290 (728)
Q Consensus 214 ~i~G~~~vk~---~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yv 290 (728)
+++|++.+.. .+..++. ....++++|+|||||||||+|+++|+.++.+|..++... ....++. ..
T Consensus 29 d~vGQe~ii~~~~~L~~~i~------~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~-~~i~dir----~~- 96 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIK------ADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL-AGVKDLR----AE- 96 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHh------cCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh-hhhHHHH----HH-
Confidence 5889998774 3444443 234568999999999999999999999988887776542 1111110 00
Q ss_pred cCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEec--CCCCC
Q 004834 291 GSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA--NRAQP 368 (728)
Q Consensus 291 G~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~Tt--N~~~~ 368 (728)
.....+.+... ....++||||||.+.... +++|+..++.. .+++|+++ |....
T Consensus 97 ---i~~a~~~l~~~-~~~~IL~IDEIh~Ln~~q----QdaLL~~lE~g-----------------~IiLI~aTTenp~~~ 151 (725)
T PRK13341 97 ---VDRAKERLERH-GKRTILFIDEVHRFNKAQ----QDALLPWVENG-----------------TITLIGATTENPYFE 151 (725)
T ss_pred ---HHHHHHHhhhc-CCceEEEEeChhhCCHHH----HHHHHHHhcCc-----------------eEEEEEecCCChHhh
Confidence 00111111111 123599999999987655 78898887631 23556543 55567
Q ss_pred CChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHH
Q 004834 369 IPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALAR 445 (728)
Q Consensus 369 l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r 445 (728)
+++++++|+.++.|++++.+++..++++.+... ... .....+.++++++.+|++.. ..++|.+.+.++.++.
T Consensus 152 l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~-~~~--~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~ 223 (725)
T PRK13341 152 VNKALVSRSRLFRLKSLSDEDLHQLLKRALQDK-ERG--YGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVE 223 (725)
T ss_pred hhhHhhccccceecCCCCHHHHHHHHHHHHHHH-Hhh--cCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999876431 111 22345789999999999865 4678999999988764
No 116
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=1.9e-14 Score=163.51 Aligned_cols=194 Identities=18% Similarity=0.234 Sum_probs=130.6
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCe-EEE-ecCCcc-----------chh
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKF-IRI-SLGGVK-----------DEA 280 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~-~~i-~~~~~~-----------~~s 280 (728)
+++|++.+++.+..++... ..++.+||+||||||||++|+++|+.+.+.. ... .|+.-. +.-
T Consensus 17 dIIGQe~iv~~L~~aI~~~-----rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Dii 91 (605)
T PRK05896 17 QIIGQELIKKILVNAILNN-----KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIV 91 (605)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceE
Confidence 6899999999988877532 2235699999999999999999999985421 100 111110 000
Q ss_pred hhccCccccccCC-cchHHHHHhhcCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 281 DIRGHRRTYIGSM-PGRLIDGLKRVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 281 ~l~g~~~~yvG~~-~g~l~~~~~~a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
++-+. ...|-. -..+...+...+.. ..|++|||+|.+.... +++|+..|++. ..++
T Consensus 92 eIdaa--s~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A----~NaLLKtLEEP---------------p~~t 150 (605)
T PRK05896 92 ELDAA--SNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSA----WNALLKTLEEP---------------PKHV 150 (605)
T ss_pred Eeccc--cccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHH----HHHHHHHHHhC---------------CCcE
Confidence 11000 001100 01222333333322 2399999999997654 89999999842 2346
Q ss_pred EEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHH
Q 004834 358 IFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 437 (728)
Q Consensus 358 i~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~ 437 (728)
+||++|+.+..+++++++||.++.|.+++.++....++..+. .. ++.++++++..+++... ..+|...
T Consensus 151 vfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~-----ke-----gi~Is~eal~~La~lS~--GdlR~Al 218 (605)
T PRK05896 151 VFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAK-----KE-----KIKIEDNAIDKIADLAD--GSLRDGL 218 (605)
T ss_pred EEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHHHHcC--CcHHHHH
Confidence 788888888999999999999999999999999988877642 22 36789999999987654 3466666
Q ss_pred HHHHHHHH
Q 004834 438 RNLAALAR 445 (728)
Q Consensus 438 ~~I~~l~r 445 (728)
+.+++++.
T Consensus 219 nlLekL~~ 226 (605)
T PRK05896 219 SILDQLST 226 (605)
T ss_pred HHHHHHHh
Confidence 67766543
No 117
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=3.6e-14 Score=164.21 Aligned_cols=192 Identities=19% Similarity=0.256 Sum_probs=131.5
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEE---ecCCccchhhhccCcccc-
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRI---SLGGVKDEADIRGHRRTY- 289 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i---~~~~~~~~s~l~g~~~~y- 289 (728)
+++||+.+++.+...+... .-++.+||+||||||||++|+++|+.+.+..... .|+.- ....|....+
T Consensus 19 dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C---~~~~~~~~Dvi 90 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC---IENVNNSLDII 90 (725)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH---HHhhcCCCcEE
Confidence 6899999999988888643 2345689999999999999999999986532111 11100 0001111111
Q ss_pred -------ccCC-cchHHHHHhhcCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEE
Q 004834 290 -------IGSM-PGRLIDGLKRVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIF 359 (728)
Q Consensus 290 -------vG~~-~g~l~~~~~~a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~ 359 (728)
.|.. -..+.+.+...+.. ..|++|||+|.+.... +++|+..|++. ...++|
T Consensus 91 eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A----~NALLKtLEEP---------------P~~tif 151 (725)
T PRK07133 91 EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSA----FNALLKTLEEP---------------PKHVIF 151 (725)
T ss_pred EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHH----HHHHHHHhhcC---------------CCceEE
Confidence 1100 01233444444432 2399999999998754 89999999852 234678
Q ss_pred EEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHH
Q 004834 360 VATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERN 439 (728)
Q Consensus 360 I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~ 439 (728)
|++|+.++.+++++++||..+.|.+++.++...++...+ +.. ++.++++++..++..+. .++|...+.
T Consensus 152 ILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il-----~ke-----gI~id~eAl~~LA~lS~--GslR~Alsl 219 (725)
T PRK07133 152 ILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFIL-----EKE-----NISYEKNALKLIAKLSS--GSLRDALSI 219 (725)
T ss_pred EEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHHcC--CCHHHHHHH
Confidence 888888899999999999999999999999998887753 222 36788999999887654 446666666
Q ss_pred HHHHH
Q 004834 440 LAALA 444 (728)
Q Consensus 440 I~~l~ 444 (728)
+++++
T Consensus 220 Lekl~ 224 (725)
T PRK07133 220 AEQVS 224 (725)
T ss_pred HHHHH
Confidence 66554
No 118
>PHA02244 ATPase-like protein
Probab=99.55 E-value=1.7e-13 Score=146.62 Aligned_cols=136 Identities=20% Similarity=0.228 Sum_probs=96.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEeccccc
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKT 319 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl 319 (728)
+..+||.||||||||++|+++|..++.+++.++ +..+...+.|..........+.+..+++. ..+++|||++.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In--~l~d~~~L~G~i~~~g~~~dgpLl~A~~~----GgvLiLDEId~a 192 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMN--AIMDEFELKGFIDANGKFHETPFYEAFKK----GGLFFIDEIDAS 192 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEe--cChHHHhhcccccccccccchHHHHHhhc----CCEEEEeCcCcC
Confidence 446899999999999999999999999999887 33344445442211112234566666543 469999999999
Q ss_pred CCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC-----------CCCChhhhCCeeEEEcCCCCHH
Q 004834 320 GSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-----------QPIPPPLLDRMEVIELPGYTPE 388 (728)
Q Consensus 320 ~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~-----------~~l~~~Ll~R~~vI~~~~~t~e 388 (728)
.++. +..|+.+++... .+...+...--.++.+|+|+|.. ..+++++++||.+|.|+.|+.-
T Consensus 193 ~p~v----q~~L~~lLd~r~----l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dyp~~~ 264 (383)
T PHA02244 193 IPEA----LIIINSAIANKF----FDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDYDEKI 264 (383)
T ss_pred CHHH----HHHHHHHhccCe----EEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCCCcHH
Confidence 9877 888999998532 22221221122467899999983 4789999999999999998743
Q ss_pred H
Q 004834 389 E 389 (728)
Q Consensus 389 e 389 (728)
|
T Consensus 265 E 265 (383)
T PHA02244 265 E 265 (383)
T ss_pred H
Confidence 3
No 119
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=3.5e-14 Score=164.08 Aligned_cols=194 Identities=21% Similarity=0.260 Sum_probs=131.6
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE--EecC-----------Cccchh
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR--ISLG-----------GVKDEA 280 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~--i~~~-----------~~~~~s 280 (728)
+++||+++++.+..++... .-++.+||+||+|||||++|+++|+.+.+.-.. -.|+ ...+..
T Consensus 17 ~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~ 91 (576)
T PRK14965 17 DLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVF 91 (576)
T ss_pred HccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCee
Confidence 7899999999999887643 234467999999999999999999998653110 0011 011111
Q ss_pred hhccCccccccCCcchHHHHHhhcCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcE
Q 004834 281 DIRGHRRTYIGSMPGRLIDGLKRVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 358 (728)
Q Consensus 281 ~l~g~~~~yvG~~~g~l~~~~~~a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi 358 (728)
++-|.....+.. -..+.+.+...+.. ..|++|||+|.++... +|+|+..|++- ..+++
T Consensus 92 eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a----~naLLk~LEep---------------p~~~~ 151 (576)
T PRK14965 92 EIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNA----FNALLKTLEEP---------------PPHVK 151 (576)
T ss_pred eeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHH----HHHHHHHHHcC---------------CCCeE
Confidence 111111000000 01233333333322 2399999999998765 89999999852 24568
Q ss_pred EEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHH
Q 004834 359 FVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLER 438 (728)
Q Consensus 359 ~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~ 438 (728)
||++||.+..+++.+++||..+.|..++.++....+...+ +. .++.++++++..+++... .++|...+
T Consensus 152 fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~-----~~-----egi~i~~~al~~la~~a~--G~lr~al~ 219 (576)
T PRK14965 152 FIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIA-----DQ-----EGISISDAALALVARKGD--GSMRDSLS 219 (576)
T ss_pred EEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHH-----HH-----hCCCCCHHHHHHHHHHcC--CCHHHHHH
Confidence 8888898999999999999999999999998887777653 22 246799999999988665 45666666
Q ss_pred HHHHHH
Q 004834 439 NLAALA 444 (728)
Q Consensus 439 ~I~~l~ 444 (728)
.+++++
T Consensus 220 ~Ldqli 225 (576)
T PRK14965 220 TLDQVL 225 (576)
T ss_pred HHHHHH
Confidence 665543
No 120
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.55 E-value=5.4e-14 Score=155.42 Aligned_cols=176 Identities=17% Similarity=0.200 Sum_probs=118.3
Q ss_pred hcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCC--CeEEEecCCccch
Q 004834 202 LDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR--KFIRISLGGVKDE 279 (728)
Q Consensus 202 ~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~--~~~~i~~~~~~~~ 279 (728)
..+..+...+.+.++|++++++.+...+ ..+.+++|.||||||||++|++++..++. +|..+.+. +.++
T Consensus 9 ~~i~~l~~~l~~~i~gre~vI~lll~aa--------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~-fttp 79 (498)
T PRK13531 9 ERISRLSSALEKGLYERSHAIRLCLLAA--------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTR-FSTP 79 (498)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHH--------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeee-ecCc
Confidence 3466788889999999999999888766 34568999999999999999999998864 33333222 1135
Q ss_pred hhhccCccccccCCcchHHHHHhhcCC-CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcE
Q 004834 280 ADIRGHRRTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 358 (728)
Q Consensus 280 s~l~g~~~~yvG~~~g~l~~~~~~a~~-~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi 358 (728)
+++.|...-+.....|.... +...+. ...++|+|||.++++.. ++.||++|++++.. . .+.+..+..-+
T Consensus 80 ~DLfG~l~i~~~~~~g~f~r-~~~G~L~~A~lLfLDEI~rasp~~----QsaLLeam~Er~~t---~--g~~~~~lp~rf 149 (498)
T PRK13531 80 EEVFGPLSIQALKDEGRYQR-LTSGYLPEAEIVFLDEIWKAGPAI----LNTLLTAINERRFR---N--GAHEEKIPMRL 149 (498)
T ss_pred HHhcCcHHHhhhhhcCchhh-hcCCccccccEEeecccccCCHHH----HHHHHHHHHhCeEe---c--CCeEEeCCCcE
Confidence 66666421111001122211 111111 23499999999998887 99999999876533 2 24455555556
Q ss_pred EEEecCCCC---CCChhhhCCee-EEEcCCCCH-HHHHHHHHH
Q 004834 359 FVATANRAQ---PIPPPLLDRME-VIELPGYTP-EEKLRIAMR 396 (728)
Q Consensus 359 ~I~TtN~~~---~l~~~Ll~R~~-vI~~~~~t~-ee~~~Il~~ 396 (728)
|+++||... .+.+++++||. .+.+++++. ++..+++..
T Consensus 150 iv~ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 150 LVTASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred EEEECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHc
Confidence 777778543 35569999997 499999974 555777765
No 121
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.55 E-value=3.5e-15 Score=141.08 Aligned_cols=125 Identities=30% Similarity=0.480 Sum_probs=90.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccc---cccCCcchHHHHHhhcCCCCcEEEEecccc
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRT---YIGSMPGRLIDGLKRVGVCNPVMLLDEIDK 318 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~---yvG~~~g~l~~~~~~a~~~~~VlllDEidk 318 (728)
++||+||||||||++++.+|+.++.++..+.++...+..++.|.... .....++.+.++++ .+.+++|||+++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~----~~~il~lDEin~ 76 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR----KGGILVLDEINR 76 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH----EEEEEEESSCGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc----ceeEEEECCccc
Confidence 48999999999999999999999999999999999999999886532 12222345555554 245999999999
Q ss_pred cCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCC-------CcEEEEecCCCC----CCChhhhCCe
Q 004834 319 TGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS-------KVIFVATANRAQ----PIPPPLLDRM 377 (728)
Q Consensus 319 l~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~-------~vi~I~TtN~~~----~l~~~Ll~R~ 377 (728)
+.++. ++.|+.+++..+.. ....+...... ++.||+|+|... .++++|++||
T Consensus 77 a~~~v----~~~L~~ll~~~~~~---~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 77 APPEV----LESLLSLLEERRIQ---LPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp --HHH----HHTTHHHHSSSEEE---E-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred CCHHH----HHHHHHHHhhCccc---ccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 98877 89999999965432 11112222222 489999999998 9999999998
No 122
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.55 E-value=1.3e-14 Score=158.37 Aligned_cols=113 Identities=23% Similarity=0.259 Sum_probs=94.1
Q ss_pred CceeechhhhhhhcCCCccCchHHHhhhcCCceeEeeEEeecCceeEEEEEEEec---CCceEEEeeccchHHHHHHHHH
Q 004834 506 SPLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEATAMR---GKGELHLTGQLGDVIKESAQIA 582 (728)
Q Consensus 506 ~~~~It~~~L~~~Lg~~~~~~~~~~~~~~~~G~~~gl~~~~~gg~~~~iE~~~~~---G~~~~~~tG~~~~~~kES~~~a 582 (728)
..|.|+.++|..+.+|+.++..++ ....+|.+...++.|...-+++||+.+++ |.|+++.+|
T Consensus 256 ~~F~i~~~Gl~~v~~ps~~fl~~~--~~~~~g~~~~~~~eg~r~~~~e~qal~~~~~~~~p~r~~~g------------- 320 (372)
T cd01121 256 GVFEMRENGLREVSNPSELFLSER--EEDVPGSAVTVVMEGSRPLLVEVQALVSPTSYANPRRVAVG------------- 320 (372)
T ss_pred EEEEECCCCeEEccChhhheecCC--CCCCCccEEEeeccCCcceeeEeehhccCCCCCCCceeEcC-------------
Confidence 358999999999999999888332 23456777666666555556666666655 679999999
Q ss_pred HHHHHHHhhhccchhcccCCC-CCcccEEEEccCCCCCCCCchhHHHHHHHHHHh
Q 004834 583 LTWVRARATDLQLVAEDGMNL-LQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSL 636 (728)
Q Consensus 583 ~~~~~~~~~~l~~~~~~~~~~-~~~~di~i~~~~g~~~kdGpsaglaia~allSa 636 (728)
+..+|+..+.++++++.++ +.++|||||+ .|+++.+.|++|||+++|++|+
T Consensus 321 --~~~~r~~~~~avl~k~~~~~~~~~dv~~~~-~gg~~~~e~~~dla~~~a~~ss 372 (372)
T cd01121 321 --FDPNRLSMLLAVLEKRLGLPLADQDVFVNV-AGGLKITEPAADLAVALAIVSS 372 (372)
T ss_pred --CChhHHHHHHHHHHHHcCCCccCCCEEEEc-cCCeeccCcHHHHHHHHHHHcC
Confidence 4899999999999999999 9999999999 8999999999999999999986
No 123
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=6.9e-14 Score=158.05 Aligned_cols=193 Identities=21% Similarity=0.270 Sum_probs=129.1
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE-E-EecCC-----------ccchh
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI-R-ISLGG-----------VKDEA 280 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~-~-i~~~~-----------~~~~s 280 (728)
+++||+.+++.+...+... ..++.+||+||||+|||++|+.+|+.+++.-. . -.|+. ..+..
T Consensus 17 diiGq~~i~~~L~~~i~~~-----~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQ-----RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI 91 (486)
T ss_pred HccChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE
Confidence 6899999999988877542 23446889999999999999999999864210 0 01111 11111
Q ss_pred hhccCccccccCC-cchHHHHHhhcCCCC--cEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 281 DIRGHRRTYIGSM-PGRLIDGLKRVGVCN--PVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 281 ~l~g~~~~yvG~~-~g~l~~~~~~a~~~~--~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
++.+... .|.. -..+.+.+...+... .|++|||+|.+.... +++|+..|+.. ...+
T Consensus 92 eidaas~--~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a----~naLLk~LEep---------------p~~~ 150 (486)
T PRK14953 92 EIDAASN--RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEA----FNALLKTLEEP---------------PPRT 150 (486)
T ss_pred EEeCccC--CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHH----HHHHHHHHhcC---------------CCCe
Confidence 1111000 0100 012334444444332 399999999997654 78999998742 1235
Q ss_pred EEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHH
Q 004834 358 IFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 437 (728)
Q Consensus 358 i~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~ 437 (728)
+||+++|..+.+++++++||..+.|++++.++...++...+ +.. ++.++++++..++..+. .++|.+.
T Consensus 151 v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~-----k~e-----gi~id~~al~~La~~s~--G~lr~al 218 (486)
T PRK14953 151 IFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRIC-----NEE-----KIEYEEKALDLLAQASE--GGMRDAA 218 (486)
T ss_pred EEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHHcC--CCHHHHH
Confidence 67777777888999999999999999999999998888764 222 36789999999987654 4566666
Q ss_pred HHHHHHH
Q 004834 438 RNLAALA 444 (728)
Q Consensus 438 ~~I~~l~ 444 (728)
+.+++++
T Consensus 219 ~~Ldkl~ 225 (486)
T PRK14953 219 SLLDQAS 225 (486)
T ss_pred HHHHHHH
Confidence 6666554
No 124
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.54 E-value=1.4e-13 Score=151.72 Aligned_cols=216 Identities=21% Similarity=0.336 Sum_probs=157.7
Q ss_pred hhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCC---CeEEEecCCccc---hhhhcc
Q 004834 211 LDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR---KFIRISLGGVKD---EADIRG 284 (728)
Q Consensus 211 L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~---~~~~i~~~~~~~---~s~l~g 284 (728)
....++|...+.+.+.+.+.... .....||+.|++||||-.+|++|.+...+ ||+.++|+.... .+++.|
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA----~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFG 214 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVA----PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFG 214 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhc
Confidence 45578898888888887765432 33456999999999999999999999854 999999998644 678888
Q ss_pred Cccc-cccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEec
Q 004834 285 HRRT-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA 363 (728)
Q Consensus 285 ~~~~-yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~Tt 363 (728)
|.++ +.|+...+ ...|..+ ..+.+|||||..++.+. |..||.+|..++..+...+. .+++| +-||++|
T Consensus 215 hekGAFTGA~~~r-~G~fE~A--~GGTLfLDEI~~mpl~~----Q~kLLRvLqe~~~~rvG~~~-~i~vd---vRiIaaT 283 (464)
T COG2204 215 HEKGAFTGAITRR-IGRFEQA--NGGTLFLDEIGEMPLEL----QVKLLRVLQEREFERVGGNK-PIKVD---VRIIAAT 283 (464)
T ss_pred ccccCcCCccccc-CcceeEc--CCceEEeeccccCCHHH----HHHHHHHHHcCeeEecCCCc-cccee---eEEEeec
Confidence 8753 33433211 1123333 35699999999998887 99999999987655544332 23343 4688999
Q ss_pred CCC-------CCCChhhhCCeeEEEcCCCCHHHHHH---HHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccch
Q 004834 364 NRA-------QPIPPPLLDRMEVIELPGYTPEEKLR---IAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGV 433 (728)
Q Consensus 364 N~~-------~~l~~~Ll~R~~vI~~~~~t~ee~~~---Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~ 433 (728)
|.. ..|.+.|..|+.++.+.-|...||.+ .+-.|+..+..++++. ....++++++..|.. |.|-.++
T Consensus 284 ~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~--~~~~~s~~a~~~L~~-y~WPGNV 360 (464)
T COG2204 284 NRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGR--PPKGFSPEALAALLA-YDWPGNV 360 (464)
T ss_pred CcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCC--CCCCCCHHHHHHHHh-CCCChHH
Confidence 975 47999999999875555554444432 4455566777777764 357899999998865 8888999
Q ss_pred HHHHHHHHHHH
Q 004834 434 RNLERNLAALA 444 (728)
Q Consensus 434 R~L~~~I~~l~ 444 (728)
|+|++.+++.+
T Consensus 361 REL~N~ver~~ 371 (464)
T COG2204 361 RELENVVERAV 371 (464)
T ss_pred HHHHHHHHHHH
Confidence 99998888776
No 125
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.53 E-value=7.9e-14 Score=152.77 Aligned_cols=193 Identities=21% Similarity=0.269 Sum_probs=127.9
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE--EecCC-----------ccchh
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR--ISLGG-----------VKDEA 280 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~--i~~~~-----------~~~~s 280 (728)
+++|++.+++.+...+... ..++.++|+||||+|||++|+++|+.+..+... -.|+. ..+..
T Consensus 15 ~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~ 89 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI 89 (355)
T ss_pred hccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence 6899999999998877532 234578999999999999999999998543110 01110 00000
Q ss_pred hhccCccccccC-CcchHHHHHhhcCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 281 DIRGHRRTYIGS-MPGRLIDGLKRVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 281 ~l~g~~~~yvG~-~~g~l~~~~~~a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
.+.+. ...+. ....+.+.+...+.. ..|++|||+|.+.... ++.|+..++.. ..++
T Consensus 90 ~~~~~--~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~----~~~Ll~~le~~---------------~~~~ 148 (355)
T TIGR02397 90 EIDAA--SNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSA----FNALLKTLEEP---------------PEHV 148 (355)
T ss_pred Eeecc--ccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHH----HHHHHHHHhCC---------------ccce
Confidence 00000 00000 001233333333322 2399999999997644 78899988631 1345
Q ss_pred EEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHH
Q 004834 358 IFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 437 (728)
Q Consensus 358 i~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~ 437 (728)
+||+++|.++.+.+++++||..+.|++|+.++...+++.++. .. ++.++++++..+++...+ ..|.+.
T Consensus 149 ~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~-----~~-----g~~i~~~a~~~l~~~~~g--~~~~a~ 216 (355)
T TIGR02397 149 VFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILD-----KE-----GIKIEDEALELIARAADG--SLRDAL 216 (355)
T ss_pred eEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHHHHcCC--ChHHHH
Confidence 777888888888999999999999999999999998888742 22 367899999999986543 455666
Q ss_pred HHHHHHH
Q 004834 438 RNLAALA 444 (728)
Q Consensus 438 ~~I~~l~ 444 (728)
+.+++++
T Consensus 217 ~~lekl~ 223 (355)
T TIGR02397 217 SLLDQLI 223 (355)
T ss_pred HHHHHHH
Confidence 6665554
No 126
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=6.1e-14 Score=160.33 Aligned_cols=195 Identities=19% Similarity=0.218 Sum_probs=128.3
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE--EecCCccchhhhc-cCccccc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR--ISLGGVKDEADIR-GHRRTYI 290 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~--i~~~~~~~~s~l~-g~~~~yv 290 (728)
+++|++.+++.+..++.... .++.+||+||||||||++|+.+|+.+++.... -.|+.-.....+. |..+.++
T Consensus 17 divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred HhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 68999999999888876432 23457999999999999999999999653210 0111100000000 0000000
Q ss_pred ---cC---CcchHHHH---HhhcCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEE
Q 004834 291 ---GS---MPGRLIDG---LKRVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIF 359 (728)
Q Consensus 291 ---G~---~~g~l~~~---~~~a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~ 359 (728)
+. .-..+.+. +...+.. ..|+||||+|++.... +|+|+..|++. ..++.|
T Consensus 92 ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a----~naLLK~LEep---------------p~~~~f 152 (527)
T PRK14969 92 EVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSA----FNAMLKTLEEP---------------PEHVKF 152 (527)
T ss_pred EeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHH----HHHHHHHHhCC---------------CCCEEE
Confidence 00 01122222 2222322 2399999999998755 89999999852 234678
Q ss_pred EEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHH
Q 004834 360 VATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERN 439 (728)
Q Consensus 360 I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~ 439 (728)
|++||.+..+++.+++||..+.|..++.++....+.+.+. .. ++.++++++..+++... ..+|...+.
T Consensus 153 IL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~-----~e-----gi~~~~~al~~la~~s~--Gslr~al~l 220 (527)
T PRK14969 153 ILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILE-----QE-----NIPFDATALQLLARAAA--GSMRDALSL 220 (527)
T ss_pred EEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHHHHcC--CCHHHHHHH
Confidence 8888888899999999999999999999998887776642 22 36789999999987643 346666666
Q ss_pred HHHHH
Q 004834 440 LAALA 444 (728)
Q Consensus 440 I~~l~ 444 (728)
+++++
T Consensus 221 ldqai 225 (527)
T PRK14969 221 LDQAI 225 (527)
T ss_pred HHHHH
Confidence 65544
No 127
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.53 E-value=6.7e-14 Score=150.44 Aligned_cols=218 Identities=17% Similarity=0.214 Sum_probs=129.3
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC-------CC--eEEEecCCccchh----
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG-------RK--FIRISLGGVKDEA---- 280 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~-------~~--~~~i~~~~~~~~s---- 280 (728)
+++||+++++.+.-.+.. ....++||.||||||||++|+++|..+. .+ +.++.+. .+..
T Consensus 9 ~i~Gq~~~~~~l~~~~~~------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~--~~~~~~~~ 80 (334)
T PRK13407 9 AIVGQEEMKQAMVLTAID------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDC--PEWAHVSS 80 (334)
T ss_pred HhCCHHHHHHHHHHHHhc------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCC--cccccccC
Confidence 588999999887764321 2236899999999999999999999993 21 1211111 0000
Q ss_pred -hhccCc------------cccccCCcchHHHH-------Hhh---cCCCCcEEEEecccccCCCCCCCHHHHHHHhcCc
Q 004834 281 -DIRGHR------------RTYIGSMPGRLIDG-------LKR---VGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDP 337 (728)
Q Consensus 281 -~l~g~~------------~~yvG~~~g~l~~~-------~~~---a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~ 337 (728)
.+...+ ...+|.. .+... ++. ....++++|+||++.+.++. ++.|++.|+.
T Consensus 81 ~~~~~~~~p~~~~p~~~t~~~l~G~~--d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~----q~~Lle~mee 154 (334)
T PRK13407 81 TTMIERPTPVVDLPLGVTEDRVVGAL--DIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHI----VDLLLDVAQS 154 (334)
T ss_pred CcccccCCccccCCCCCCcceeecch--hhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHH----HHHHHHHHHc
Confidence 010000 0122210 00011 111 11234699999999998877 8999999987
Q ss_pred ccccccccCCCCeeecC-CCcEEEEecCCCC-CCChhhhCCee-EEEcCCCCH-HHHHHHHHHhhch-------------
Q 004834 338 EQNKTFNDHYLNVPFDL-SKVIFVATANRAQ-PIPPPLLDRME-VIELPGYTP-EEKLRIAMRHLIP------------- 400 (728)
Q Consensus 338 ~~~~~~~d~~~~~~~d~-~~vi~I~TtN~~~-~l~~~Ll~R~~-vI~~~~~t~-ee~~~Il~~~l~~------------- 400 (728)
++...-.+ |..+.. ..+++++|+|..+ .++++|++||. .+.++++.. +++.+|+.+....
T Consensus 155 ~~v~v~r~---G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~ 231 (334)
T PRK13407 155 GENVVERE---GLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGA 231 (334)
T ss_pred CCeEEEEC---CeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccc
Confidence 65211111 222222 3568889999865 69999999997 588887777 8888888874311
Q ss_pred ------HHHhhcCCCccccccCHHHHHHHHHHc--ccccchHHHHHHHHHHHHHHHHHHH
Q 004834 401 ------RVLDQHGLGSEFLQIPEAMVKLVIQRY--TREAGVRNLERNLAALARAAAVKVA 452 (728)
Q Consensus 401 ------~~~~~~~~~~~~~~i~d~~l~~l~~~~--~~~~G~R~L~~~I~~l~r~a~~~~~ 452 (728)
..+....-.-..+.+++++++++++-+ ++..|.| ..|. +++.|...++
T Consensus 232 ~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~R---a~i~-l~~aA~a~A~ 287 (334)
T PRK13407 232 EDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLR---GELT-LLRAARALAA 287 (334)
T ss_pred cccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCch---HHHH-HHHHHHHHHH
Confidence 001111111245789999999998833 3334544 4444 5554444444
No 128
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.53 E-value=1.2e-13 Score=150.24 Aligned_cols=204 Identities=18% Similarity=0.254 Sum_probs=131.1
Q ss_pred CCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCC----
Q 004834 191 LPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR---- 266 (728)
Q Consensus 191 iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~---- 266 (728)
.+|.....+..++ +++|++.+++.+..++.. ...++++|+||||||||++|+++++.+..
T Consensus 3 ~~w~~ky~P~~~~----------~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~ 66 (337)
T PRK12402 3 PLWTEKYRPALLE----------DILGQDEVVERLSRAVDS------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWE 66 (337)
T ss_pred CchHHhhCCCcHH----------HhcCCHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccc
Confidence 3666555553333 578999999998887752 23357999999999999999999998843
Q ss_pred -CeEEEecCCccch--hhhccCcccc---ccC-------CcchHHHHHhh----cC--CCCcEEEEecccccCCCCCCCH
Q 004834 267 -KFIRISLGGVKDE--ADIRGHRRTY---IGS-------MPGRLIDGLKR----VG--VCNPVMLLDEIDKTGSDVRGDP 327 (728)
Q Consensus 267 -~~~~i~~~~~~~~--s~l~g~~~~y---vG~-------~~g~l~~~~~~----a~--~~~~VlllDEidkl~~~~~~~~ 327 (728)
++..+++....+. ..+..+ +.+ .+. ....+.+.... .+ ....+++|||++.+..+.
T Consensus 67 ~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~---- 141 (337)
T PRK12402 67 NNFTEFNVADFFDQGKKYLVED-PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDA---- 141 (337)
T ss_pred cceEEechhhhhhcchhhhhcC-cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHH----
Confidence 3455555443110 011001 111 111 01112221111 11 123499999999987544
Q ss_pred HHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcC
Q 004834 328 ASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHG 407 (728)
Q Consensus 328 ~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~ 407 (728)
++.|+..++... .++.||+|+|.+..+.++|.+|+..+.|.+++.++..++++..+ ...
T Consensus 142 ~~~L~~~le~~~---------------~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~-----~~~- 200 (337)
T PRK12402 142 QQALRRIMEQYS---------------RTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIA-----EAE- 200 (337)
T ss_pred HHHHHHHHHhcc---------------CCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHH-----HHc-
Confidence 677888876321 22456667776777888999999999999999999988888763 223
Q ss_pred CCccccccCHHHHHHHHHHcccccchHHHHHHHHH
Q 004834 408 LGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAA 442 (728)
Q Consensus 408 ~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~ 442 (728)
++.++++++..+++... ..+|.+.+.++.
T Consensus 201 ----~~~~~~~al~~l~~~~~--gdlr~l~~~l~~ 229 (337)
T PRK12402 201 ----GVDYDDDGLELIAYYAG--GDLRKAILTLQT 229 (337)
T ss_pred ----CCCCCHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 35699999999998663 445555544443
No 129
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.52 E-value=1.2e-13 Score=151.95 Aligned_cols=185 Identities=16% Similarity=0.219 Sum_probs=117.6
Q ss_pred ccccchHHHHHHHHHHHHhhccC----CCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE-EecCCccchhhh-cc-C
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLK----PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR-ISLGGVKDEADI-RG-H 285 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~----~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~-i~~~~~~~~s~l-~g-~ 285 (728)
.+++||+.+++.+...+...... ....++.+||+||||+|||++|+++|+.+...... -.|+.-.+-..+ .| |
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 36899999999999988765311 11134569999999999999999999988553210 011100000000 00 1
Q ss_pred ccc-cc---cC--CcchHHHHHh---hcCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecC
Q 004834 286 RRT-YI---GS--MPGRLIDGLK---RVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDL 354 (728)
Q Consensus 286 ~~~-yv---G~--~~g~l~~~~~---~a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~ 354 (728)
+.- ++ |. .-+.+.+.+. ..+.. ..|+||||+|.+.+.. +|+|+..|++. .
T Consensus 85 pD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~a----anaLLk~LEep---------------~ 145 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERA----ANALLKAVEEP---------------P 145 (394)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHH----HHHHHHHhhcC---------------C
Confidence 100 00 00 0123333333 33322 2399999999998765 89999999852 2
Q ss_pred CCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHccccc
Q 004834 355 SKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 431 (728)
Q Consensus 355 ~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~ 431 (728)
.+++||.+|+.++.++|++++||..+.|++|+.++..+++... ..++++....++....+..
T Consensus 146 ~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~---------------~~~~~~~a~~la~~s~G~~ 207 (394)
T PRK07940 146 PRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRR---------------DGVDPETARRAARASQGHI 207 (394)
T ss_pred CCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHh---------------cCCCHHHHHHHHHHcCCCH
Confidence 3456777777789999999999999999999999877766532 1245666666665544433
No 130
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=2.1e-13 Score=154.27 Aligned_cols=191 Identities=16% Similarity=0.169 Sum_probs=129.9
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE-EE-ecCC----------cc-chh
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI-RI-SLGG----------VK-DEA 280 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~-~i-~~~~----------~~-~~s 280 (728)
+++||+.+++.+..++... .-++.+||+||||+|||++|+++|+.+...-. .. .|+. .+ +..
T Consensus 15 eiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 15 ELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred HccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 6999999999999887533 23446799999999999999999999843210 00 0000 00 000
Q ss_pred hhccCccccccCCcchHHHHHhh---cCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCC
Q 004834 281 DIRGHRRTYIGSMPGRLIDGLKR---VGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS 355 (728)
Q Consensus 281 ~l~g~~~~yvG~~~g~l~~~~~~---a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~ 355 (728)
++-+.. ..| -..+.+.... .+.. ..|++|||+|.+..+. +++|+..|+.. ..
T Consensus 90 eldaas--~~g--Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A----~NALLK~LEEp---------------p~ 146 (535)
T PRK08451 90 EMDAAS--NRG--IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEA----FNALLKTLEEP---------------PS 146 (535)
T ss_pred Eecccc--ccC--HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHH----HHHHHHHHhhc---------------CC
Confidence 000000 000 1234444332 2221 2399999999998765 89999999852 23
Q ss_pred CcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHH
Q 004834 356 KVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 435 (728)
Q Consensus 356 ~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~ 435 (728)
++.||+++|.+..+++++++||..+.|.+++.++....+...+ +.. ++.++++++..+++... .+.|.
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il-----~~E-----Gi~i~~~Al~~Ia~~s~--GdlR~ 214 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTIL-----EKE-----GVSYEPEALEILARSGN--GSLRD 214 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHHcC--CcHHH
Confidence 4677888888899999999999999999999999888777663 222 36889999999998554 46677
Q ss_pred HHHHHHHHH
Q 004834 436 LERNLAALA 444 (728)
Q Consensus 436 L~~~I~~l~ 444 (728)
..+.+++++
T Consensus 215 alnlLdqai 223 (535)
T PRK08451 215 TLTLLDQAI 223 (535)
T ss_pred HHHHHHHHH
Confidence 766666655
No 131
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=1.8e-13 Score=156.90 Aligned_cols=195 Identities=16% Similarity=0.182 Sum_probs=131.2
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE--EEecCCccchhhh-ccCccc--
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI--RISLGGVKDEADI-RGHRRT-- 288 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~--~i~~~~~~~~s~l-~g~~~~-- 288 (728)
+++||+.+++.+..++... ..++.+||+||||+|||++|+++|+.+.+... ...|+.-.+...+ .|....
T Consensus 17 diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~ 91 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVI 91 (563)
T ss_pred HccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeE
Confidence 7899999999998888643 23456999999999999999999999965311 0011110000000 000000
Q ss_pred -cccCC---cchHHHHH---hhcCC--CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEE
Q 004834 289 -YIGSM---PGRLIDGL---KRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIF 359 (728)
Q Consensus 289 -yvG~~---~g~l~~~~---~~a~~--~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~ 359 (728)
+-|.. -..+.+.. ...+. ...|++|||++.+.... +++|+..|+.. ...++|
T Consensus 92 ~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a----~naLLK~LEep---------------p~~~vf 152 (563)
T PRK06647 92 EIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSA----FNALLKTIEEP---------------PPYIVF 152 (563)
T ss_pred EecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHH----HHHHHHhhccC---------------CCCEEE
Confidence 11111 12333332 22222 23499999999997654 89999999842 234678
Q ss_pred EEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHH
Q 004834 360 VATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERN 439 (728)
Q Consensus 360 I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~ 439 (728)
|++++.+..+++++++||..+.|.+++.++..++++..+ .. .++.++++++.+|++... ..+|.+.+.
T Consensus 153 I~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~-----~~-----egi~id~eAl~lLa~~s~--GdlR~alsl 220 (563)
T PRK06647 153 IFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVC-----LE-----DQIKYEDEALKWIAYKST--GSVRDAYTL 220 (563)
T ss_pred EEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHHcC--CCHHHHHHH
Confidence 888888889999999999999999999999988887653 22 246789999999998654 356777777
Q ss_pred HHHHH
Q 004834 440 LAALA 444 (728)
Q Consensus 440 I~~l~ 444 (728)
+++++
T Consensus 221 Ldkli 225 (563)
T PRK06647 221 FDQVV 225 (563)
T ss_pred HHHHH
Confidence 76654
No 132
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.51 E-value=6.8e-14 Score=156.27 Aligned_cols=196 Identities=24% Similarity=0.316 Sum_probs=143.9
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE-------------EEecCCccch
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI-------------RISLGGVKDE 279 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~-------------~i~~~~~~~~ 279 (728)
.+++||+.+.+.+...+...++ .+.++|.||-||||||+||.+|+.+++.-. .+.-+...|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri-----~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~Dv 90 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRI-----AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDV 90 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcc-----hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccc
Confidence 3689999999999998876543 356899999999999999999999976431 1222223333
Q ss_pred hhhccCccccccCCcchHHHHHhhcCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 280 ADIRGHRRTYIGSMPGRLIDGLKRVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 280 s~l~g~~~~yvG~~~g~l~~~~~~a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
-++-+...+-|... ..+.+....++.. .-|.+|||++.++... +|+||..|++ ..++|
T Consensus 91 iEiDaASn~gVddi-R~i~e~v~y~P~~~ryKVyiIDEvHMLS~~a----fNALLKTLEE---------------PP~hV 150 (515)
T COG2812 91 IEIDAASNTGVDDI-REIIEKVNYAPSEGRYKVYIIDEVHMLSKQA----FNALLKTLEE---------------PPSHV 150 (515)
T ss_pred hhhhhhhccChHHH-HHHHHHhccCCccccceEEEEecHHhhhHHH----HHHHhccccc---------------CccCe
Confidence 33333322211110 1233333333332 2299999999999877 9999999985 25678
Q ss_pred EEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHH
Q 004834 358 IFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 437 (728)
Q Consensus 358 i~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~ 437 (728)
+||++|..+..+|+.+++||..+.|..++.++...-+...+ .++++.++++++..+++.. +.++|+-.
T Consensus 151 ~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~----------~~E~I~~e~~aL~~ia~~a--~Gs~RDal 218 (515)
T COG2812 151 KFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAIL----------DKEGINIEEDALSLIARAA--EGSLRDAL 218 (515)
T ss_pred EEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHH----------HhcCCccCHHHHHHHHHHc--CCChhhHH
Confidence 99999999999999999999999999999998888777763 2456899999999999765 46777777
Q ss_pred HHHHHHHH
Q 004834 438 RNLAALAR 445 (728)
Q Consensus 438 ~~I~~l~r 445 (728)
..+.+++.
T Consensus 219 slLDq~i~ 226 (515)
T COG2812 219 SLLDQAIA 226 (515)
T ss_pred HHHHHHHH
Confidence 77776664
No 133
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=2.6e-13 Score=152.51 Aligned_cols=193 Identities=18% Similarity=0.191 Sum_probs=129.3
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEE---ecCC-----------ccch
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRI---SLGG-----------VKDE 279 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i---~~~~-----------~~~~ 279 (728)
+++|++.+++.+..++... .-++.+||+||||+|||++|+++|+.+...-..- .|+. ..+.
T Consensus 18 diiGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~ 92 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV 92 (451)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce
Confidence 7899999999988887533 2345689999999999999999999985431100 0110 0011
Q ss_pred hhhccCccccccCCc-chHHHHHhhcC--CCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCC
Q 004834 280 ADIRGHRRTYIGSMP-GRLIDGLKRVG--VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 356 (728)
Q Consensus 280 s~l~g~~~~yvG~~~-g~l~~~~~~a~--~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~ 356 (728)
.++.|. ...|... ..+.+.+...+ ....|++|||+|.+.... ++.|+..|+.. ..+
T Consensus 93 ~~i~g~--~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~----~n~LLk~lEep---------------~~~ 151 (451)
T PRK06305 93 LEIDGA--SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEA----FNSLLKTLEEP---------------PQH 151 (451)
T ss_pred EEeecc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHH----HHHHHHHhhcC---------------CCC
Confidence 111110 0111000 11222222221 223499999999997654 89999999842 134
Q ss_pred cEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHH
Q 004834 357 VIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 436 (728)
Q Consensus 357 vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L 436 (728)
++||+++|....+.+++++||.++.|++++.++...++...+ +. .++.++++++..++.... .+.|.+
T Consensus 152 ~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~-----~~-----eg~~i~~~al~~L~~~s~--gdlr~a 219 (451)
T PRK06305 152 VKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIA-----KQ-----EGIETSREALLPIARAAQ--GSLRDA 219 (451)
T ss_pred ceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHHcC--CCHHHH
Confidence 678888888899999999999999999999999888877653 22 246799999999998664 356666
Q ss_pred HHHHHHHH
Q 004834 437 ERNLAALA 444 (728)
Q Consensus 437 ~~~I~~l~ 444 (728)
.+.+++++
T Consensus 220 ~~~Lekl~ 227 (451)
T PRK06305 220 ESLYDYVV 227 (451)
T ss_pred HHHHHHHH
Confidence 66666654
No 134
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=1.9e-13 Score=158.47 Aligned_cols=194 Identities=23% Similarity=0.294 Sum_probs=128.3
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE----EecCCccchhhh-ccCccc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR----ISLGGVKDEADI-RGHRRT 288 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~----i~~~~~~~~s~l-~g~~~~ 288 (728)
+++|++.+++.+..++.... -.+.+||+||||+|||++|+++|+.+.+.... -.|+.-.....+ .|....
T Consensus 17 ~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D 91 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALD 91 (620)
T ss_pred hccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCcc
Confidence 68999999999988886432 34689999999999999999999999763211 011110000000 000000
Q ss_pred c------ccCCcchHHHHHhhc---CC--CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 289 Y------IGSMPGRLIDGLKRV---GV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 289 y------vG~~~g~l~~~~~~a---~~--~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
+ .+..-..+.+.+..+ +. ...|++|||+|.+.... +++||..|++- ...+
T Consensus 92 ~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a----~naLLK~LEeP---------------p~~t 152 (620)
T PRK14948 92 VIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAA----FNALLKTLEEP---------------PPRV 152 (620)
T ss_pred EEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHH----HHHHHHHHhcC---------------CcCe
Confidence 0 011112344443332 21 12499999999997654 89999999842 2346
Q ss_pred EEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHH
Q 004834 358 IFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 437 (728)
Q Consensus 358 i~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~ 437 (728)
+||++|+.+..+.+.+++||..+.|..++.++....+.... .+ .++.++++++..+++... .+.|...
T Consensus 153 vfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia-----~k-----egi~is~~al~~La~~s~--G~lr~A~ 220 (620)
T PRK14948 153 VFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIA-----EK-----ESIEIEPEALTLVAQRSQ--GGLRDAE 220 (620)
T ss_pred EEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHH-----HH-----hCCCCCHHHHHHHHHHcC--CCHHHHH
Confidence 78888888888999999999999999999988777666542 22 236788999988887654 3456666
Q ss_pred HHHHHH
Q 004834 438 RNLAAL 443 (728)
Q Consensus 438 ~~I~~l 443 (728)
+.++++
T Consensus 221 ~lLekl 226 (620)
T PRK14948 221 SLLDQL 226 (620)
T ss_pred HHHHHH
Confidence 666554
No 135
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.51 E-value=1.1e-13 Score=150.16 Aligned_cols=213 Identities=18% Similarity=0.293 Sum_probs=157.3
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCcc---chhhhccCcc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVK---DEADIRGHRR 287 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~---~~s~l~g~~~ 287 (728)
.++|+..+...+.+.+..-. .....||+.|.+||||..+|++|.+... .||+.++|...- -+|++.||.+
T Consensus 224 ~iIG~S~am~~ll~~i~~VA----~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeK 299 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEVVA----KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEK 299 (550)
T ss_pred cceecCHHHHHHHHHHHHHh----cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccc
Confidence 68899998888888776543 3445799999999999999999999884 699999998753 3788998875
Q ss_pred ccccCCcchHHHHHhhcC-CCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC
Q 004834 288 TYIGSMPGRLIDGLKRVG-VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA 366 (728)
Q Consensus 288 ~yvG~~~g~l~~~~~~a~-~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~ 366 (728)
+ +..|.+.+..-+.. ..++-+|||||.-++... |..||.+|.++...+...+. .+.+|. -+|++||+.
T Consensus 300 G---AFTGA~~~r~GrFElAdGGTLFLDEIGelPL~l----QaKLLRvLQegEieRvG~~r-~ikVDV---RiIAATNRD 368 (550)
T COG3604 300 G---AFTGAINTRRGRFELADGGTLFLDEIGELPLAL----QAKLLRVLQEGEIERVGGDR-TIKVDV---RVIAATNRD 368 (550)
T ss_pred c---ccccchhccCcceeecCCCeEechhhccCCHHH----HHHHHHHHhhcceeecCCCc-eeEEEE---EEEeccchh
Confidence 3 22232222111111 135699999999999888 99999999887766554432 334444 688999985
Q ss_pred -------CCCChhhhCCeeEEEcCCCCHHHH---HHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHH
Q 004834 367 -------QPIPPPLLDRMEVIELPGYTPEEK---LRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 436 (728)
Q Consensus 367 -------~~l~~~Ll~R~~vI~~~~~t~ee~---~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L 436 (728)
..|...|..|+.++++.-|...|| .-++-.|+..+...+.|.. .+.+++++++.+.+ |.+-.+||+|
T Consensus 369 L~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~--~l~ls~~Al~~L~~-y~wPGNVREL 445 (550)
T COG3604 369 LEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRA--ILSLSAEALELLSS-YEWPGNVREL 445 (550)
T ss_pred HHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCc--ccccCHHHHHHHHc-CCCCCcHHHH
Confidence 478999999998755555544443 3466777788888888753 58899999999865 7788899888
Q ss_pred HHHHHHHH
Q 004834 437 ERNLAALA 444 (728)
Q Consensus 437 ~~~I~~l~ 444 (728)
++.|++.+
T Consensus 446 en~veRav 453 (550)
T COG3604 446 ENVVERAV 453 (550)
T ss_pred HHHHHHHH
Confidence 87776554
No 136
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.5e-13 Score=148.19 Aligned_cols=132 Identities=28% Similarity=0.314 Sum_probs=103.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEeccccc
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKT 319 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl 319 (728)
..+.||+||||||||+++-|+|+.|+...+.+++++..+.+++ ...+...+ ..+||+|.+||+.
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dL---------------r~LL~~t~-~kSIivIEDIDcs 298 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDL---------------RHLLLATP-NKSILLIEDIDCS 298 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHH---------------HHHHHhCC-CCcEEEEeecccc
Confidence 3589999999999999999999999999999999887765543 34454444 4579999999998
Q ss_pred CC--CCCC------------CHHHHHHHhcCcccccccccCCCCeeecC-CCcEEEEecCCCCCCChhhhC--Cee-EEE
Q 004834 320 GS--DVRG------------DPASALLEVLDPEQNKTFNDHYLNVPFDL-SKVIFVATANRAQPIPPPLLD--RME-VIE 381 (728)
Q Consensus 320 ~~--~~~~------------~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~-~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~ 381 (728)
.. +.+. -..+-||..+|+- .-.+ ..-++|+|||..+.+||||++ ||| .|+
T Consensus 299 ~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGl------------wSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 299 FDLRERRKKKKENFEGDLSRVTLSGLLNFLDGL------------WSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIY 366 (457)
T ss_pred cccccccccccccccCCcceeehHHhhhhhccc------------cccCCCceEEEEecCChhhcCHhhcCCCcceeEEE
Confidence 43 1111 1256788888742 1112 223788999999999999999 999 599
Q ss_pred cCCCCHHHHHHHHHHhhc
Q 004834 382 LPGYTPEEKLRIAMRHLI 399 (728)
Q Consensus 382 ~~~~t~ee~~~Il~~~l~ 399 (728)
+...+.+....++++||-
T Consensus 367 mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYLG 384 (457)
T ss_pred cCCCCHHHHHHHHHHhcC
Confidence 999999999999999973
No 137
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=2.3e-13 Score=157.02 Aligned_cols=197 Identities=18% Similarity=0.211 Sum_probs=130.9
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE----------EecCCccchhhh
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR----------ISLGGVKDEADI 282 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~----------i~~~~~~~~s~l 282 (728)
++++||+.+++.+...+... .-++.+||+|||||||||+|+.+|+.+.+.... -.|+.-.+...+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 47899999999988877532 223459999999999999999999999763100 111111000000
Q ss_pred -ccCcccc---ccCC---cchHHHHHhhc---CCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCe
Q 004834 283 -RGHRRTY---IGSM---PGRLIDGLKRV---GVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNV 350 (728)
Q Consensus 283 -~g~~~~y---vG~~---~g~l~~~~~~a---~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~ 350 (728)
.|....+ .|.. ...+.+..... +.. ..|++|||+|.+.... +++|+..|++-
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a----~naLLK~LEeP------------ 154 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAA----FNAFLKTLEEP------------ 154 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHH----HHHHHHHHhCC------------
Confidence 0111111 1111 12333332222 332 2399999999997654 89999999842
Q ss_pred eecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccc
Q 004834 351 PFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTRE 430 (728)
Q Consensus 351 ~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~ 430 (728)
...++||++++....+.+.+.+|+.++.|.+++.++....+...+ +. .++.+++++++.++....
T Consensus 155 ---p~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~-----~~-----egi~I~~eal~~La~~s~-- 219 (620)
T PRK14954 155 ---PPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMIC-----RA-----EGIQIDADALQLIARKAQ-- 219 (620)
T ss_pred ---CCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHHhC--
Confidence 133567777777889999999999999999999999887776653 22 236799999999998664
Q ss_pred cchHHHHHHHHHHHH
Q 004834 431 AGVRNLERNLAALAR 445 (728)
Q Consensus 431 ~G~R~L~~~I~~l~r 445 (728)
.++|.+.+.+++++.
T Consensus 220 Gdlr~al~eLeKL~~ 234 (620)
T PRK14954 220 GSMRDAQSILDQVIA 234 (620)
T ss_pred CCHHHHHHHHHHHHH
Confidence 456777777776653
No 138
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.50 E-value=7.5e-14 Score=137.45 Aligned_cols=187 Identities=21% Similarity=0.344 Sum_probs=127.2
Q ss_pred cCCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh-CCC-
Q 004834 190 DLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL-GRK- 267 (728)
Q Consensus 190 ~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l-~~~- 267 (728)
.+||....++..+ .+++|.++..+++.-+.. +..-|+++|.|||||||||-+.++|+.| |..
T Consensus 14 ~l~wVeKYrP~~l----------~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ 77 (333)
T KOG0991|consen 14 QLPWVEKYRPSVL----------QDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLARELLGDSY 77 (333)
T ss_pred cchHHHhhCchHH----------HHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHHHHhChhh
Confidence 4667665555222 279999999999877654 3456899999999999999999999887 422
Q ss_pred ---eEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCC-----CcEEEEecccccCCCCCCCHHHHHHHhcCccc
Q 004834 268 ---FIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVC-----NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQ 339 (728)
Q Consensus 268 ---~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~-----~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~ 339 (728)
...++.+.. +|- .-. ..-...|.+.... ..|++|||.|.+.... +.+|...|+-..
T Consensus 78 ke~vLELNASde------RGI-----DvV-Rn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gA----QQAlRRtMEiyS 141 (333)
T KOG0991|consen 78 KEAVLELNASDE------RGI-----DVV-RNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGA----QQALRRTMEIYS 141 (333)
T ss_pred hhHhhhccCccc------ccc-----HHH-HHHHHHHHHhhccCCCCceeEEEeeccchhhhHH----HHHHHHHHHHHc
Confidence 223333321 110 000 1112233333222 2399999999998766 889998887321
Q ss_pred ccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHH
Q 004834 340 NKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAM 419 (728)
Q Consensus 340 ~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~ 419 (728)
+.+-|..++|..+.+-+|+.+||-++.|..++..+...-+.... + .+.+.++++.
T Consensus 142 ---------------~ttRFalaCN~s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~-----k-----~Ekv~yt~dg 196 (333)
T KOG0991|consen 142 ---------------NTTRFALACNQSEKIIEPIQSRCAILRYSKLSDQQILKRLLEVA-----K-----AEKVNYTDDG 196 (333)
T ss_pred ---------------ccchhhhhhcchhhhhhhHHhhhHhhhhcccCHHHHHHHHHHHH-----H-----HhCCCCCcch
Confidence 23468889999999999999999999999999887655444331 1 2457899999
Q ss_pred HHHHHHHcccccchHH
Q 004834 420 VKLVIQRYTREAGVRN 435 (728)
Q Consensus 420 l~~l~~~~~~~~G~R~ 435 (728)
++.++- +.+..+|+
T Consensus 197 Leaiif--ta~GDMRQ 210 (333)
T KOG0991|consen 197 LEAIIF--TAQGDMRQ 210 (333)
T ss_pred HHHhhh--hccchHHH
Confidence 999984 44455444
No 139
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=2.8e-13 Score=149.32 Aligned_cols=191 Identities=15% Similarity=0.226 Sum_probs=129.3
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc-cchhhhccCccccccC
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV-KDEADIRGHRRTYIGS 292 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~-~~~s~l~g~~~~yvG~ 292 (728)
+++|++.+++.+...+... ..+++++|+||||+|||++|+++|+.+..+.......+. .+..++.+. . ..
T Consensus 18 ~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~--~--~~ 88 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAA--S--NN 88 (367)
T ss_pred hcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccc--c--CC
Confidence 6899999999988887532 234689999999999999999999998653221100000 000000000 0 00
Q ss_pred CcchHHHHHh---hcCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC
Q 004834 293 MPGRLIDGLK---RVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ 367 (728)
Q Consensus 293 ~~g~l~~~~~---~a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~ 367 (728)
....+.+.+. ..+.. ..|+++||+|.+.... ++.|+..++.. ...++||+++|...
T Consensus 89 ~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~----~~~ll~~le~~---------------~~~~~~Il~~~~~~ 149 (367)
T PRK14970 89 SVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAA----FNAFLKTLEEP---------------PAHAIFILATTEKH 149 (367)
T ss_pred CHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHH----HHHHHHHHhCC---------------CCceEEEEEeCCcc
Confidence 0123333333 22222 2399999999987644 78888888631 12356777788888
Q ss_pred CCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHH
Q 004834 368 PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 368 ~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
.+.+++.+|+.++.|++++.++...++...+ .+. ++.++++++..++.... .++|.+.+.+++++
T Consensus 150 kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~-----~~~-----g~~i~~~al~~l~~~~~--gdlr~~~~~lekl~ 214 (367)
T PRK14970 150 KIIPTILSRCQIFDFKRITIKDIKEHLAGIA-----VKE-----GIKFEDDALHIIAQKAD--GALRDALSIFDRVV 214 (367)
T ss_pred cCCHHHHhcceeEecCCccHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHhCC--CCHHHHHHHHHHHH
Confidence 9999999999999999999999888887763 222 36799999999998653 45777777777766
No 140
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=1.5e-13 Score=152.59 Aligned_cols=196 Identities=18% Similarity=0.198 Sum_probs=128.2
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCe-E---------EEecCCccchhhh
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKF-I---------RISLGGVKDEADI 282 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~-~---------~i~~~~~~~~s~l 282 (728)
.+++||+.+++.+..++... .-++.++|+||||||||++|+++|+.+.+.. . .-.|+.-.+...+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 37899999999888877532 2234599999999999999999999996531 0 0011110000000
Q ss_pred -ccCccc---cccCC---cchHHHH---HhhcCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCe
Q 004834 283 -RGHRRT---YIGSM---PGRLIDG---LKRVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNV 350 (728)
Q Consensus 283 -~g~~~~---yvG~~---~g~l~~~---~~~a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~ 350 (728)
.|.... +.|.. ...+.+. +...+.. ..|+||||+|++.... ++.|+..|++.
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~----~~~LLk~LEep------------ 154 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAA----FNAFLKTLEEP------------ 154 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHH----HHHHHHHHhcC------------
Confidence 000000 11111 1233333 3222332 2399999999997644 78899988742
Q ss_pred eecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccc
Q 004834 351 PFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTRE 430 (728)
Q Consensus 351 ~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~ 430 (728)
...++||++++....+.+++.+|+.++.|.+++.++....++..+. . .++.++++++..++....
T Consensus 155 ---~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~-----~-----~g~~i~~~al~~l~~~s~-- 219 (397)
T PRK14955 155 ---PPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICE-----A-----EGISVDADALQLIGRKAQ-- 219 (397)
T ss_pred ---CCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-----H-----cCCCCCHHHHHHHHHHcC--
Confidence 1235677777777889999999999999999999998887776642 2 246899999999998654
Q ss_pred cchHHHHHHHHHHH
Q 004834 431 AGVRNLERNLAALA 444 (728)
Q Consensus 431 ~G~R~L~~~I~~l~ 444 (728)
...|.+.+.+++++
T Consensus 220 g~lr~a~~~L~kl~ 233 (397)
T PRK14955 220 GSMRDAQSILDQVI 233 (397)
T ss_pred CCHHHHHHHHHHHH
Confidence 34666666666655
No 141
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.50 E-value=1.6e-13 Score=150.91 Aligned_cols=215 Identities=20% Similarity=0.306 Sum_probs=151.6
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCccc---hhhhccCc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKD---EADIRGHR 286 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~~---~s~l~g~~ 286 (728)
.+++|...+..++.+.+.... .....+|+.|.+||||..+|++|.+... .||+.++|+..-. +|++.|..
T Consensus 245 ~~Iig~S~~m~~~~~~akr~A----~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye 320 (560)
T COG3829 245 DDIIGESPAMLRVLELAKRIA----KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYE 320 (560)
T ss_pred hhhccCCHHHHHHHHHHHhhc----CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcC
Confidence 367787777766666554322 3445799999999999999999999884 5999999997643 67777654
Q ss_pred cc-cccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCC
Q 004834 287 RT-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR 365 (728)
Q Consensus 287 ~~-yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~ 365 (728)
++ |.|+..+.-...|..| .++-+|||||..++... |..||++|.+.+..+..+. ..+++|. -+|++||.
T Consensus 321 ~GAFTGA~~~GK~GlfE~A--~gGTLFLDEIgempl~L----QaKLLRVLQEkei~rvG~t-~~~~vDV---RIIAATN~ 390 (560)
T COG3829 321 KGAFTGASKGGKPGLFELA--NGGTLFLDEIGEMPLPL----QAKLLRVLQEKEIERVGGT-KPIPVDV---RIIAATNR 390 (560)
T ss_pred CccccccccCCCCcceeec--cCCeEEehhhccCCHHH----HHHHHHHHhhceEEecCCC-CceeeEE---EEEeccCc
Confidence 32 4444432111222222 35699999999998877 9999999998766554433 2456655 58999998
Q ss_pred C-------CCCChhhhCCeeEEEcCCCCHHHH---HHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHH
Q 004834 366 A-------QPIPPPLLDRMEVIELPGYTPEEK---LRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 435 (728)
Q Consensus 366 ~-------~~l~~~Ll~R~~vI~~~~~t~ee~---~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~ 435 (728)
. ..|...|.-|+.++.+.-|...+| ...+-.+++.+...+++- ....++++++..|.+ |.|-.++|.
T Consensus 391 nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~--~v~~ls~~a~~~L~~-y~WPGNVRE 467 (560)
T COG3829 391 NLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGR--NVKGLSPDALALLLR-YDWPGNVRE 467 (560)
T ss_pred CHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCC--CcccCCHHHHHHHHh-CCCCchHHH
Confidence 5 489999999998644444443333 335556666666666653 234499999998865 888899999
Q ss_pred HHHHHHHHH
Q 004834 436 LERNLAALA 444 (728)
Q Consensus 436 L~~~I~~l~ 444 (728)
|++.|++++
T Consensus 468 LeNviER~v 476 (560)
T COG3829 468 LENVIERAV 476 (560)
T ss_pred HHHHHHHHH
Confidence 999998877
No 142
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.49 E-value=2.3e-13 Score=146.63 Aligned_cols=196 Identities=21% Similarity=0.300 Sum_probs=131.9
Q ss_pred HcCCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCC-
Q 004834 189 ADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK- 267 (728)
Q Consensus 189 ~~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~- 267 (728)
..+||....++..++ +++|++++++.+..++.. ...++++|+||||||||++++++++.+..+
T Consensus 3 ~~~~w~~kyrP~~~~----------~~~g~~~~~~~l~~~i~~------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~ 66 (319)
T PRK00440 3 MEEIWVEKYRPRTLD----------EIVGQEEIVERLKSYVKE------KNMPHLLFAGPPGTGKTTAALALARELYGED 66 (319)
T ss_pred ccCccchhhCCCcHH----------HhcCcHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 357887766663333 578999999999888752 233578999999999999999999988432
Q ss_pred ----eEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCC---CcEEEEecccccCCCCCCCHHHHHHHhcCcccc
Q 004834 268 ----FIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVC---NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQN 340 (728)
Q Consensus 268 ----~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~---~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~ 340 (728)
++.++.+.... .......+.+.....+.. ..++++||+|.+.... ++.|+..++..
T Consensus 67 ~~~~~i~~~~~~~~~-----------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~----~~~L~~~le~~-- 129 (319)
T PRK00440 67 WRENFLELNASDERG-----------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDA----QQALRRTMEMY-- 129 (319)
T ss_pred cccceEEeccccccc-----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHH----HHHHHHHHhcC--
Confidence 22222211000 000001222222222222 3499999999996644 67888888632
Q ss_pred cccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHH
Q 004834 341 KTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMV 420 (728)
Q Consensus 341 ~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l 420 (728)
..++.||+++|....+.+++.+|+.++.|++++.++...+++.++. .. ++.++++++
T Consensus 130 -------------~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~-----~~-----~~~i~~~al 186 (319)
T PRK00440 130 -------------SQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAE-----NE-----GIEITDDAL 186 (319)
T ss_pred -------------CCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHH
Confidence 1234677788888888899999999999999999999888887642 22 367999999
Q ss_pred HHHHHHcccccchHHHHHHHHH
Q 004834 421 KLVIQRYTREAGVRNLERNLAA 442 (728)
Q Consensus 421 ~~l~~~~~~~~G~R~L~~~I~~ 442 (728)
.++++... ...|.+.+.++.
T Consensus 187 ~~l~~~~~--gd~r~~~~~l~~ 206 (319)
T PRK00440 187 EAIYYVSE--GDMRKAINALQA 206 (319)
T ss_pred HHHHHHcC--CCHHHHHHHHHH
Confidence 99998654 345554444443
No 143
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=3.3e-13 Score=155.47 Aligned_cols=195 Identities=19% Similarity=0.225 Sum_probs=131.6
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEe-------cCCccchhhhc-cC
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS-------LGGVKDEADIR-GH 285 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~-------~~~~~~~s~l~-g~ 285 (728)
+++||+.+++.+..++...+ .+..+||+||+|||||++|+.+|+.+.+.....+ |+.-.....+. |.
T Consensus 25 dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~ 99 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGR 99 (598)
T ss_pred HhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCC
Confidence 78999999999998876432 3457999999999999999999999975432111 11000000000 00
Q ss_pred -c-------cccccCCc-chHHHHHhhcCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecC
Q 004834 286 -R-------RTYIGSMP-GRLIDGLKRVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDL 354 (728)
Q Consensus 286 -~-------~~yvG~~~-g~l~~~~~~a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~ 354 (728)
+ ....|-.. ..+.+.+...+.. ..|+||||+|.++... +++|+..|++- .
T Consensus 100 h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a----~naLLKtLEeP---------------p 160 (598)
T PRK09111 100 HVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAA----FNALLKTLEEP---------------P 160 (598)
T ss_pred CCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHH----HHHHHHHHHhC---------------C
Confidence 0 00111000 1233333333332 2399999999997654 89999999842 2
Q ss_pred CCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchH
Q 004834 355 SKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVR 434 (728)
Q Consensus 355 ~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R 434 (728)
..++||++++..+.+++.+++||..+.|..++.++....++..+ +. .++.++++++..|++... ..+|
T Consensus 161 ~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~-----~k-----egi~i~~eAl~lIa~~a~--Gdlr 228 (598)
T PRK09111 161 PHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIA-----AK-----EGVEVEDEALALIARAAE--GSVR 228 (598)
T ss_pred CCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHHcC--CCHH
Confidence 34678888888888999999999999999999999988887764 22 246789999999987553 4566
Q ss_pred HHHHHHHHHH
Q 004834 435 NLERNLAALA 444 (728)
Q Consensus 435 ~L~~~I~~l~ 444 (728)
.+.+.+++++
T Consensus 229 ~al~~Ldkli 238 (598)
T PRK09111 229 DGLSLLDQAI 238 (598)
T ss_pred HHHHHHHHHH
Confidence 6666666653
No 144
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.8e-14 Score=145.60 Aligned_cols=159 Identities=25% Similarity=0.384 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHhhccCCC--------CCCCEEEEEcCCCCChhHHHHHHHHHhCC---------CeEEEecCCccchhh
Q 004834 219 VRVKQRIIEYLAVRKLKPD--------ARGPVLCFVGPPGVGKTSLASSIASALGR---------KFIRISLGGVKDEAD 281 (728)
Q Consensus 219 ~~vk~~i~~~l~~~~~~~~--------~~~~~lLL~GPpGtGKT~LakalA~~l~~---------~~~~i~~~~~~~~s~ 281 (728)
..+|+++..|.+...+... .-...+||+||||||||+|+|++|+.|.. ..+.++.... -+
T Consensus 148 s~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsL--FS- 224 (423)
T KOG0744|consen 148 SNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSL--FS- 224 (423)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHH--HH-
Confidence 5578888888765432111 22457999999999999999999999842 1222222211 11
Q ss_pred hccCccccccCCcchHHHHHhhc----CCCCc--EEEEecccccCCCC-----CCCH------HHHHHHhcCcccccccc
Q 004834 282 IRGHRRTYIGSMPGRLIDGLKRV----GVCNP--VMLLDEIDKTGSDV-----RGDP------ASALLEVLDPEQNKTFN 344 (728)
Q Consensus 282 l~g~~~~yvG~~~g~l~~~~~~a----~~~~~--VlllDEidkl~~~~-----~~~~------~~~Ll~~Ld~~~~~~~~ 344 (728)
+|.++....+...|.+. ...+. .++|||++.+...+ +++| .|++|..||.-.
T Consensus 225 ------KWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK----- 293 (423)
T KOG0744|consen 225 ------KWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK----- 293 (423)
T ss_pred ------HHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-----
Confidence 45554443333333321 11222 57799999886533 2222 689999998532
Q ss_pred cCCCCeeecCCCcEEEEecCCCCCCChhhhCCee-EEEcCCCCHHHHHHHHHHhhc
Q 004834 345 DHYLNVPFDLSKVIFVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLI 399 (728)
Q Consensus 345 d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~ 399 (728)
...|+++.+|+|..+.+|.+|.||-| +.++.+|+.+.+.+|++..+.
T Consensus 294 --------~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 294 --------RYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred --------cCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHH
Confidence 14688999999999999999999999 588999999999999998763
No 145
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=8.3e-13 Score=153.37 Aligned_cols=196 Identities=20% Similarity=0.261 Sum_probs=129.1
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE---EecCCccchhhhc-cCccc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR---ISLGGVKDEADIR-GHRRT 288 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~---i~~~~~~~~s~l~-g~~~~ 288 (728)
.+++||+.+++.+..++.... .++.+||+||||+|||++|+.+|+.+.+.... -.|+.-.....+. |....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d 90 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVD 90 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCe
Confidence 378999999999988776432 34567999999999999999999998642210 0111100000000 00000
Q ss_pred cc---c---CCcc---hHHHHHhhcCC--CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 289 YI---G---SMPG---RLIDGLKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 289 yv---G---~~~g---~l~~~~~~a~~--~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
++ + .... .+.+.+...+. ...|+||||+|.+..+. ++.|+..|+.. ..++
T Consensus 91 ~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a----~naLLk~LEep---------------p~~t 151 (585)
T PRK14950 91 VIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAA----FNALLKTLEEP---------------PPHA 151 (585)
T ss_pred EEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHH----HHHHHHHHhcC---------------CCCe
Confidence 00 0 0011 22233332222 23499999999997654 88999998742 1345
Q ss_pred EEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHH
Q 004834 358 IFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 437 (728)
Q Consensus 358 i~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~ 437 (728)
+||++++..+.+.+.+.+||..+.|..++..+...++...+ ... ++.++++++..+++.+. ...|.+.
T Consensus 152 v~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a-----~~e-----gl~i~~eal~~La~~s~--Gdlr~al 219 (585)
T PRK14950 152 IFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIA-----AAE-----GINLEPGALEAIARAAT--GSMRDAE 219 (585)
T ss_pred EEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHHcC--CCHHHHH
Confidence 77788888888999999999999999999998888877653 222 36789999999988654 3567777
Q ss_pred HHHHHHH
Q 004834 438 RNLAALA 444 (728)
Q Consensus 438 ~~I~~l~ 444 (728)
+.|++++
T Consensus 220 ~~LekL~ 226 (585)
T PRK14950 220 NLLQQLA 226 (585)
T ss_pred HHHHHHH
Confidence 7776654
No 146
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=9.3e-13 Score=152.77 Aligned_cols=196 Identities=14% Similarity=0.215 Sum_probs=131.5
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEE---ecCCccchhhhc-cCccc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRI---SLGGVKDEADIR-GHRRT 288 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i---~~~~~~~~s~l~-g~~~~ 288 (728)
.+++|++.+++.+..++.... -++.+||+||+|+|||++|+.+|+.+.+..... .|+.-.+...+. +....
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 378999999999998876332 234589999999999999999999986421100 011000000000 00000
Q ss_pred ---cccCC---cchHHHHHhh---cCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 289 ---YIGSM---PGRLIDGLKR---VGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 289 ---yvG~~---~g~l~~~~~~---a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
+-+.. ...+.+.+.. .+.. ..|++|||+|.+.... +++|+..|+.- ..++
T Consensus 92 ~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a----~naLLK~LEep---------------p~~t 152 (614)
T PRK14971 92 IHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAA----FNAFLKTLEEP---------------PSYA 152 (614)
T ss_pred eEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHH----HHHHHHHHhCC---------------CCCe
Confidence 01110 1234444322 2222 2399999999997654 89999999842 2346
Q ss_pred EEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHH
Q 004834 358 IFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 437 (728)
Q Consensus 358 i~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~ 437 (728)
+||++++....+.+++++||.++.|.+++.++....++..+ +.. ++.++++++..|+.... .++|.+.
T Consensus 153 ifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia-----~~e-----gi~i~~~al~~La~~s~--gdlr~al 220 (614)
T PRK14971 153 IFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVA-----SKE-----GITAEPEALNVIAQKAD--GGMRDAL 220 (614)
T ss_pred EEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHHcC--CCHHHHH
Confidence 78888888889999999999999999999999888777653 222 47899999999998664 4677777
Q ss_pred HHHHHHH
Q 004834 438 RNLAALA 444 (728)
Q Consensus 438 ~~I~~l~ 444 (728)
+.+++++
T Consensus 221 ~~Lekl~ 227 (614)
T PRK14971 221 SIFDQVV 227 (614)
T ss_pred HHHHHHH
Confidence 7777765
No 147
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.45 E-value=6.1e-13 Score=160.20 Aligned_cols=175 Identities=21% Similarity=0.294 Sum_probs=123.0
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh----------CCCeEEEecCCccchhhh
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEADI 282 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l----------~~~~~~i~~~~~~~~s~l 282 (728)
+.++|+++..+++.+.+... ...+++|+||||||||++++.+|..+ +.+++.++++.....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag--- 248 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAG--- 248 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhc---
Confidence 37999999999988877532 34578999999999999999999988 455666665543221
Q ss_pred ccCccccccCCcchHHHHHhhc-C-CCCcEEEEecccccCCCCC----CCHHHHHHHhcCcccccccccCCCCeeecCCC
Q 004834 283 RGHRRTYIGSMPGRLIDGLKRV-G-VCNPVMLLDEIDKTGSDVR----GDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 356 (728)
Q Consensus 283 ~g~~~~yvG~~~g~l~~~~~~a-~-~~~~VlllDEidkl~~~~~----~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~ 356 (728)
..|.|..+.++...+... . ..++|+||||++.+..... .|.++.|...|. .+.
T Consensus 249 ----~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~-----------------~g~ 307 (857)
T PRK10865 249 ----AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-----------------RGE 307 (857)
T ss_pred ----cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh-----------------cCC
Confidence 246777777777776542 1 2345999999999975432 133455554443 234
Q ss_pred cEEEEecCCCC-----CCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHH
Q 004834 357 VIFVATANRAQ-----PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLV 423 (728)
Q Consensus 357 vi~I~TtN~~~-----~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l 423 (728)
+.+|++|+..+ .++++|.+||+.|.++.|+.++...|++.. .++....++ +.++++++...
T Consensus 308 l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l-~~~~e~~~~-----v~~~d~a~~~a 373 (857)
T PRK10865 308 LHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGL-KERYELHHH-----VQITDPAIVAA 373 (857)
T ss_pred CeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHH-hhhhccCCC-----CCcCHHHHHHH
Confidence 67889888876 589999999998899999999999998653 333323332 45566655544
No 148
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.45 E-value=5.8e-13 Score=157.11 Aligned_cols=206 Identities=20% Similarity=0.245 Sum_probs=133.4
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCc-cchhhhccCccc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGV-KDEADIRGHRRT 288 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~-~~~s~l~g~~~~ 288 (728)
..++|.+...+++.+.+.. ....+++|+||||||||++|+.+|..+ +.|+...++.-+ .+...+.. ...
T Consensus 186 ~~liGR~~ei~~~i~iL~r------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~lla-G~~ 258 (758)
T PRK11034 186 DPLIGREKELERAIQVLCR------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA-GTK 258 (758)
T ss_pred CcCcCCCHHHHHHHHHHhc------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhc-ccc
Confidence 3689999999999987754 234567899999999999999999875 112211111110 11122221 124
Q ss_pred cccCCcchHHHHHhhcC-CCCcEEEEecccccCCCCC--C---CHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEe
Q 004834 289 YIGSMPGRLIDGLKRVG-VCNPVMLLDEIDKTGSDVR--G---DPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVAT 362 (728)
Q Consensus 289 yvG~~~g~l~~~~~~a~-~~~~VlllDEidkl~~~~~--~---~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~T 362 (728)
|.|..+.++...+.... ..+.|+|||||+.+..... + +..+.|..++. ...+.+|++
T Consensus 259 ~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-----------------~g~i~vIgA 321 (758)
T PRK11034 259 YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-----------------SGKIRVIGS 321 (758)
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-----------------CCCeEEEec
Confidence 67777766666655432 2346999999999865432 1 12333444443 134678898
Q ss_pred cCCCC-----CCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHH
Q 004834 363 ANRAQ-----PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 437 (728)
Q Consensus 363 tN~~~-----~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~ 437 (728)
||..+ ..+++|.+||+.|.++.|+.++...|++.. .++....|+ +.++++++...++-..++..-|.+-
T Consensus 322 Tt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~-~~~ye~~h~-----v~i~~~al~~a~~ls~ryi~~r~lP 395 (758)
T PRK11034 322 TTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL-KPKYEAHHD-----VRYTAKAVRAAVELAVKYINDRHLP 395 (758)
T ss_pred CChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH-HHHhhhccC-----CCcCHHHHHHHHHHhhccccCccCh
Confidence 88764 579999999999999999999999999875 344444443 7899999988877444434444443
Q ss_pred HHHHHHHHHHH
Q 004834 438 RNLAALARAAA 448 (728)
Q Consensus 438 ~~I~~l~r~a~ 448 (728)
...-.++..|+
T Consensus 396 dKaidlldea~ 406 (758)
T PRK11034 396 DKAIDVIDEAG 406 (758)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 149
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.43 E-value=3.3e-12 Score=147.08 Aligned_cols=204 Identities=17% Similarity=0.195 Sum_probs=131.7
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC----------CCeEEEecCCccchhh--
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG----------RKFIRISLGGVKDEAD-- 281 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~----------~~~~~i~~~~~~~~s~-- 281 (728)
.+.|.++-.+.|..++.-... ...++..++++||||||||.+++.+.+.+. ..++.|+|....++..
T Consensus 756 ~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 456889999999888865443 223334567999999999999999987761 3456777765443322
Q ss_pred ------hccCccccccCCc-chHHHHHhhc---CCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCee
Q 004834 282 ------IRGHRRTYIGSMP-GRLIDGLKRV---GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVP 351 (728)
Q Consensus 282 ------l~g~~~~yvG~~~-g~l~~~~~~a---~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~ 351 (728)
+.+..+. .|... ..+...+... .....||+|||||.+.... +..|+++++....
T Consensus 835 qvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----QDVLYnLFR~~~~----------- 898 (1164)
T PTZ00112 835 QVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----QKVLFTLFDWPTK----------- 898 (1164)
T ss_pred HHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----HHHHHHHHHHhhc-----------
Confidence 2222221 12211 1222333322 1112389999999998753 6788888874210
Q ss_pred ecCCCcEEEEecCCC---CCCChhhhCCee--EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHH
Q 004834 352 FDLSKVIFVATANRA---QPIPPPLLDRME--VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQR 426 (728)
Q Consensus 352 ~d~~~vi~I~TtN~~---~~l~~~Ll~R~~--vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~ 426 (728)
..+.+++|+.+|.. +.++|.+.+||. .|.|++|+.+++.+|++..+.. . ...++++++..+++.
T Consensus 899 -s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~-----A-----~gVLdDdAIELIArk 967 (1164)
T PTZ00112 899 -INSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN-----C-----KEIIDHTAIQLCARK 967 (1164)
T ss_pred -cCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh-----C-----CCCCCHHHHHHHHHh
Confidence 12457889999874 467788999985 5999999999999999987531 1 135899999999984
Q ss_pred cccccchHHHHHHHHHHHHHHH
Q 004834 427 YTREAGVRNLERNLAALARAAA 448 (728)
Q Consensus 427 ~~~~~G~R~L~~~I~~l~r~a~ 448 (728)
.....| +.++.| .+||.|+
T Consensus 968 VAq~SG--DARKAL-DILRrAg 986 (1164)
T PTZ00112 968 VANVSG--DIRKAL-QICRKAF 986 (1164)
T ss_pred hhhcCC--HHHHHH-HHHHHHH
Confidence 444334 333333 3445443
No 150
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.43 E-value=1.3e-12 Score=141.26 Aligned_cols=211 Identities=18% Similarity=0.295 Sum_probs=140.9
Q ss_pred cchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCccc---hhhhccCccc-
Q 004834 216 YGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKD---EADIRGHRRT- 288 (728)
Q Consensus 216 ~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~~---~s~l~g~~~~- 288 (728)
+|...+.+.+.+.+.... .....|+|.|+|||||+++|++|..... .+|+.++|+...+ .+++.|+.++
T Consensus 2 iG~S~~m~~~~~~~~~~a----~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~ 77 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLA----PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGA 77 (329)
T ss_pred CcCCHHHHHHHHHHHHHh----CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhcccccc
Confidence 455555666655554332 2345689999999999999999988764 6899999987543 3455665432
Q ss_pred cccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC--
Q 004834 289 YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-- 366 (728)
Q Consensus 289 yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~-- 366 (728)
|.|+.... ...+..+ .++++|||||+.++... +..|+++|+.......... .+. ..++.+|+|||..
T Consensus 78 ~~ga~~~~-~G~~~~a--~gGtL~Ldei~~L~~~~----Q~~Ll~~l~~~~~~~~g~~---~~~-~~~~RiI~at~~~l~ 146 (329)
T TIGR02974 78 FTGAQKRH-QGRFERA--DGGTLFLDELATASLLV----QEKLLRVIEYGEFERVGGS---QTL-QVDVRLVCATNADLP 146 (329)
T ss_pred ccCccccc-CCchhhC--CCCEEEeCChHhCCHHH----HHHHHHHHHcCcEEecCCC---cee-ccceEEEEechhhHH
Confidence 22322111 1112222 35799999999999887 8999999986543222111 111 2345788888764
Q ss_pred -----CCCChhhhCCee--EEEcCCCCH--HHHHHHHHHhhchHHHhhcCCCccc-cccCHHHHHHHHHHcccccchHHH
Q 004834 367 -----QPIPPPLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEF-LQIPEAMVKLVIQRYTREAGVRNL 436 (728)
Q Consensus 367 -----~~l~~~Ll~R~~--vI~~~~~t~--ee~~~Il~~~l~~~~~~~~~~~~~~-~~i~d~~l~~l~~~~~~~~G~R~L 436 (728)
..|.+.|..|+. .|.+|++.. +++..++..++. +...+++.. . ..++++++..|.. |.+..++|+|
T Consensus 147 ~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~-~~~~~~~~~--~~~~ls~~a~~~L~~-y~WPGNvrEL 222 (329)
T TIGR02974 147 ALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAI-RMARELGLP--LFPGFTPQAREQLLE-YHWPGNVREL 222 (329)
T ss_pred HHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHH-HHHHHhCCC--CCCCcCHHHHHHHHh-CCCCchHHHH
Confidence 368899999995 488888774 556666666543 344444422 2 4789999998865 8888999999
Q ss_pred HHHHHHHHH
Q 004834 437 ERNLAALAR 445 (728)
Q Consensus 437 ~~~I~~l~r 445 (728)
++.|++.|.
T Consensus 223 ~n~i~~~~~ 231 (329)
T TIGR02974 223 KNVVERSVY 231 (329)
T ss_pred HHHHHHHHH
Confidence 999988773
No 151
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.42 E-value=1.5e-12 Score=140.31 Aligned_cols=201 Identities=16% Similarity=0.216 Sum_probs=122.2
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCC-------CeEEEecCCcc-chhhhccC
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR-------KFIRISLGGVK-DEADIRGH 285 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~-------~~~~i~~~~~~-~~s~l~g~ 285 (728)
+++||+++|..+...+.. +...+++|.||+|||||++|+++++.+.. +|. .+...-. ..+.++++
T Consensus 18 ~ivGq~~~k~al~~~~~~------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~p~~~~~~~~~~ 90 (350)
T CHL00081 18 AIVGQEEMKLALILNVID------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSDPELMSDEVREA 90 (350)
T ss_pred HHhChHHHHHHHHHhccC------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCChhhhchhhhhh
Confidence 689999999988876543 23347999999999999999999998842 221 0000000 00011111
Q ss_pred c------------ccc----ccCCcch------HHHHHhhc----------CCCCcEEEEecccccCCCCCCCHHHHHHH
Q 004834 286 R------------RTY----IGSMPGR------LIDGLKRV----------GVCNPVMLLDEIDKTGSDVRGDPASALLE 333 (728)
Q Consensus 286 ~------------~~y----vG~~~g~------l~~~~~~a----------~~~~~VlllDEidkl~~~~~~~~~~~Ll~ 333 (728)
. -.+ .|..+.+ +..++... ...++++|+||++.+.+.. ++.|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~----Q~~LLe 166 (350)
T CHL00081 91 IQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHL----VDILLD 166 (350)
T ss_pred hcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHH----HHHHHH
Confidence 0 000 1111111 11122111 1235699999999999887 999999
Q ss_pred hcCcccccccccCCCCeeecCCCcEEEEecCCCC-CCChhhhCCee-EEEcCCCC-HHHHHHHHHHhhc----hH-----
Q 004834 334 VLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-PIPPPLLDRME-VIELPGYT-PEEKLRIAMRHLI----PR----- 401 (728)
Q Consensus 334 ~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~-~l~~~Ll~R~~-vI~~~~~t-~ee~~~Il~~~l~----~~----- 401 (728)
.|+.++...-.+. ..... ...+++|+|.|..+ .++++|++||. .+.+..++ .+++.+|+++... +.
T Consensus 167 am~e~~~~ier~G-~s~~~-p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~ 244 (350)
T CHL00081 167 SAASGWNTVEREG-ISIRH-PARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREK 244 (350)
T ss_pred HHHhCCeEEeeCC-eeeec-CCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhh
Confidence 9986543211111 11112 22568889999766 79999999998 68899887 5888899887532 10
Q ss_pred ----------HHhhcCCCccccccCHHHHHHHHHHc
Q 004834 402 ----------VLDQHGLGSEFLQIPEAMVKLVIQRY 427 (728)
Q Consensus 402 ----------~~~~~~~~~~~~~i~d~~l~~l~~~~ 427 (728)
.+....-.-..+.++++.++++++-+
T Consensus 245 ~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~ 280 (350)
T CHL00081 245 YEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQIC 280 (350)
T ss_pred hccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 00000001245789999999998833
No 152
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.42 E-value=7e-12 Score=137.97 Aligned_cols=214 Identities=18% Similarity=0.173 Sum_probs=129.8
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC---------CCeEEEecCCccchhhhc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---------RKFIRISLGGVKDEADIR 283 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~---------~~~~~i~~~~~~~~s~l~ 283 (728)
+.+.|.++..+.+..++..... ...++.++++||||||||++++.+++.+. ..++.+++....+...+.
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 3578999989888888764322 23456799999999999999999998763 246667776544432221
Q ss_pred ----------cCccccccCCcchHHHHH-hhc--CCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCe
Q 004834 284 ----------GHRRTYIGSMPGRLIDGL-KRV--GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNV 350 (728)
Q Consensus 284 ----------g~~~~yvG~~~g~l~~~~-~~a--~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~ 350 (728)
|......|.....+...+ ... .....|++|||+|.+.... ...|++++.... ..
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~----~~~L~~l~~~~~----~~----- 159 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD----DDLLYQLSRARS----NG----- 159 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC----cHHHHhHhcccc----cc-----
Confidence 211111121112222221 111 1122389999999997332 234444443100 00
Q ss_pred eecCCCcEEEEecCCCC---CCChhhhCCee--EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHH
Q 004834 351 PFDLSKVIFVATANRAQ---PIPPPLLDRME--VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQ 425 (728)
Q Consensus 351 ~~d~~~vi~I~TtN~~~---~l~~~Ll~R~~--vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~ 425 (728)
.....++.+|+++|.++ .+++.+.+||. .|.|++|+.++..+|++..+.. +.. ...++++++..+++
T Consensus 160 ~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~------~~~--~~~~~~~~l~~i~~ 231 (365)
T TIGR02928 160 DLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEK------AFY--DGVLDDGVIPLCAA 231 (365)
T ss_pred CCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHh------hcc--CCCCChhHHHHHHH
Confidence 01224578889888875 58888999994 7999999999999999987521 111 13478888888776
Q ss_pred HcccccchHHHHHHHHHHHHHHHHHHH
Q 004834 426 RYTREAGVRNLERNLAALARAAAVKVA 452 (728)
Q Consensus 426 ~~~~~~G~R~L~~~I~~l~r~a~~~~~ 452 (728)
.+....| .+ |.+-.+|+.|+..+.
T Consensus 232 ~~~~~~G--d~-R~al~~l~~a~~~a~ 255 (365)
T TIGR02928 232 LAAQEHG--DA-RKAIDLLRVAGEIAE 255 (365)
T ss_pred HHHHhcC--CH-HHHHHHHHHHHHHHH
Confidence 4443333 12 344556666655443
No 153
>PRK06893 DNA replication initiation factor; Validated
Probab=99.42 E-value=1.3e-12 Score=134.39 Aligned_cols=161 Identities=18% Similarity=0.336 Sum_probs=108.0
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEec
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 315 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDE 315 (728)
..+.++|+||||||||+|++++|+.+. .....+.+..... ....+.+.+. ...+++|||
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~--------------~~~~~~~~~~----~~dlLilDD 99 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--------------FSPAVLENLE----QQDLVCLDD 99 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh--------------hhHHHHhhcc----cCCEEEEeC
Confidence 446789999999999999999998873 2333333221000 0011112221 235999999
Q ss_pred ccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCC-CCCC---ChhhhCCee---EEEcCCCCHH
Q 004834 316 IDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR-AQPI---PPPLLDRME---VIELPGYTPE 388 (728)
Q Consensus 316 idkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~-~~~l---~~~Ll~R~~---vI~~~~~t~e 388 (728)
++.+..+. +....|+.+++..+. ..+.++|.|+|. +..+ .+.|.+|+. ++.+++|+.+
T Consensus 100 i~~~~~~~--~~~~~l~~l~n~~~~-------------~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e 164 (229)
T PRK06893 100 LQAVIGNE--EWELAIFDLFNRIKE-------------QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDE 164 (229)
T ss_pred hhhhcCCh--HHHHHHHHHHHHHHH-------------cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHH
Confidence 99986543 124578888764321 122344555554 5443 489999995 7999999999
Q ss_pred HHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHH
Q 004834 389 EKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 389 e~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
++.+|+++... . .++.++++++.+|++++.+ .+|.|...++++-
T Consensus 165 ~~~~iL~~~a~-----~-----~~l~l~~~v~~~L~~~~~~--d~r~l~~~l~~l~ 208 (229)
T PRK06893 165 QKIIVLQRNAY-----Q-----RGIELSDEVANFLLKRLDR--DMHTLFDALDLLD 208 (229)
T ss_pred HHHHHHHHHHH-----H-----cCCCCCHHHHHHHHHhccC--CHHHHHHHHHHHH
Confidence 99999988742 1 2478999999999998864 5678888887764
No 154
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.41 E-value=2.2e-12 Score=144.58 Aligned_cols=173 Identities=18% Similarity=0.287 Sum_probs=115.1
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEeccc
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEID 317 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEid 317 (728)
..++|+||||+|||+|++++++.+. .....++...+.. ++... + . .+. .+.|+..-....|++|||++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~--~~~~~---l-~--~~~-~~~f~~~~~~~dvLiIDDiq 212 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE--HLVSA---I-R--SGE-MQRFRQFYRNVDALFIEDIE 212 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH--HHHHH---H-h--cch-HHHHHHHcccCCEEEEcchh
Confidence 4688999999999999999999873 3444443322111 11100 0 0 011 12333322345699999999
Q ss_pred ccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCC-C---CCCChhhhCCee---EEEcCCCCHHHH
Q 004834 318 KTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR-A---QPIPPPLLDRME---VIELPGYTPEEK 390 (728)
Q Consensus 318 kl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~-~---~~l~~~Ll~R~~---vI~~~~~t~ee~ 390 (728)
.+..+. ..+..|+.+++.... ..+ .+|.|+|. + ..++++|.+||. ++.+.+|+.+++
T Consensus 213 ~l~~k~--~~qeelf~l~N~l~~-------------~~k-~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r 276 (445)
T PRK12422 213 VFSGKG--ATQEEFFHTFNSLHT-------------EGK-LIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGL 276 (445)
T ss_pred hhcCCh--hhHHHHHHHHHHHHH-------------CCC-cEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHH
Confidence 986532 125677777653211 112 34455554 3 367899999994 799999999999
Q ss_pred HHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHH
Q 004834 391 LRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVK 450 (728)
Q Consensus 391 ~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~a~~~ 450 (728)
..|+++... . .++.++++++++++.++. .++|.|...+..+|...+..
T Consensus 277 ~~iL~~k~~-----~-----~~~~l~~evl~~la~~~~--~dir~L~g~l~~l~~~~a~~ 324 (445)
T PRK12422 277 RSFLERKAE-----A-----LSIRIEETALDFLIEALS--SNVKSLLHALTLLAKRVAYK 324 (445)
T ss_pred HHHHHHHHH-----H-----cCCCCCHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHH
Confidence 999988742 2 237899999999999876 57899999999998655443
No 155
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.41 E-value=2.1e-12 Score=149.17 Aligned_cols=212 Identities=21% Similarity=0.333 Sum_probs=146.9
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccc---hhhhccCc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKD---EADIRGHR 286 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~---~s~l~g~~ 286 (728)
..++|.+...+.+.+.+.... .....++|+|++|||||++|++|.... +.+|+.++|....+ .+++.|+.
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~ 271 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHE 271 (534)
T ss_pred CceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCC
Confidence 468898888888887765443 234568999999999999999999886 46899999987643 34566665
Q ss_pred cc-cccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCC
Q 004834 287 RT-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR 365 (728)
Q Consensus 287 ~~-yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~ 365 (728)
++ |.|..... ...+..+ .++++|||||+.+++.. +..|+++|+..+....... ...++ ++.+|+|||.
T Consensus 272 ~~~~~~~~~~~-~g~~~~a--~~GtL~ldei~~L~~~~----Q~~Ll~~l~~~~~~~~~~~-~~~~~---~~riI~~s~~ 340 (534)
T TIGR01817 272 KGAFTGAIAQR-KGRFELA--DGGTLFLDEIGEISPAF----QAKLLRVLQEGEFERVGGN-RTLKV---DVRLVAATNR 340 (534)
T ss_pred CCccCCCCcCC-CCccccc--CCCeEEEechhhCCHHH----HHHHHHHHhcCcEEECCCC-ceEee---cEEEEEeCCC
Confidence 43 22221110 0112222 35699999999999887 8999999986543221111 11222 3567888776
Q ss_pred C-------CCCChhhhCCee--EEEcCCCC--HHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchH
Q 004834 366 A-------QPIPPPLLDRME--VIELPGYT--PEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVR 434 (728)
Q Consensus 366 ~-------~~l~~~Ll~R~~--vI~~~~~t--~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R 434 (728)
. ..|.+.|..|+. .|.+|++. .++...++..++. +...+++.. +.++++++..|.. |.+..++|
T Consensus 341 ~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~-~~~~~~~~~---~~~s~~a~~~L~~-~~WPGNvr 415 (534)
T TIGR01817 341 DLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLE-KFNRENGRP---LTITPSAIRVLMS-CKWPGNVR 415 (534)
T ss_pred CHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHH-HHHHHcCCC---CCCCHHHHHHHHh-CCCCChHH
Confidence 4 378899999996 48888887 3666667766653 344444432 6899999998865 78889999
Q ss_pred HHHHHHHHHH
Q 004834 435 NLERNLAALA 444 (728)
Q Consensus 435 ~L~~~I~~l~ 444 (728)
+|++.|+..+
T Consensus 416 EL~~v~~~a~ 425 (534)
T TIGR01817 416 ELENCLERTA 425 (534)
T ss_pred HHHHHHHHHH
Confidence 9998888776
No 156
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.41 E-value=2.4e-12 Score=138.80 Aligned_cols=200 Identities=16% Similarity=0.184 Sum_probs=119.8
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccc---------------
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKD--------------- 278 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~--------------- 278 (728)
.++||+++|..+.-.+. .+...++++.||||+||||++++++..+..-.+.+.+....+
T Consensus 5 ~ivgq~~~~~al~~~~~------~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 78 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVI------DPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRV 78 (337)
T ss_pred ccccHHHHHHHHHHHhc------CCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhh
Confidence 58999999988765543 133567999999999999999999999832111111100000
Q ss_pred h-----------hhhccCcc-----ccccCCcchHHHHH-------hh---cCCCCcEEEEecccccCCCCCCCHHHHHH
Q 004834 279 E-----------ADIRGHRR-----TYIGSMPGRLIDGL-------KR---VGVCNPVMLLDEIDKTGSDVRGDPASALL 332 (728)
Q Consensus 279 ~-----------s~l~g~~~-----~yvG~~~g~l~~~~-------~~---a~~~~~VlllDEidkl~~~~~~~~~~~Ll 332 (728)
. ..+..-+. .++|.. .+...+ +. ....++++|+||++.+.+.. ++.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~--d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~----Q~~Ll 152 (337)
T TIGR02030 79 DSQEPLSIIKKPVPVVDLPLGATEDRVCGTL--DIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHL----VDVLL 152 (337)
T ss_pred hcccccccccCCCCcCCCCCCCcccceecch--hHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHH----HHHHH
Confidence 0 00000000 122221 011111 10 11234699999999998876 89999
Q ss_pred HhcCcccccccccCCCCeeecCCCcEEEEecCCCC-CCChhhhCCee-EEEcCCCCH-HHHHHHHHHhhc----------
Q 004834 333 EVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-PIPPPLLDRME-VIELPGYTP-EEKLRIAMRHLI---------- 399 (728)
Q Consensus 333 ~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~-~l~~~Ll~R~~-vI~~~~~t~-ee~~~Il~~~l~---------- 399 (728)
++|+.++.....+ ....+.+ ..+++|+|+|..+ .++++|++||. .+.++++.. +++.+|+++...
T Consensus 153 ~~l~~g~~~v~r~-G~~~~~~-~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~ 230 (337)
T TIGR02030 153 DVAASGWNVVERE-GISIRHP-ARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCE 230 (337)
T ss_pred HHHHhCCeEEEEC-CEEEEcC-CCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhh
Confidence 9998654221111 1111222 3578889999765 79999999998 588888876 888888877321
Q ss_pred ---------hHHHhhcCCCccccccCHHHHHHHHHHc
Q 004834 400 ---------PRVLDQHGLGSEFLQIPEAMVKLVIQRY 427 (728)
Q Consensus 400 ---------~~~~~~~~~~~~~~~i~d~~l~~l~~~~ 427 (728)
++.+....-.-..+.+++++++++++-+
T Consensus 231 ~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~ 267 (337)
T TIGR02030 231 KWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELC 267 (337)
T ss_pred hhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 0000000001245779999999998843
No 157
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.41 E-value=1.7e-12 Score=156.57 Aligned_cols=184 Identities=21% Similarity=0.311 Sum_probs=129.6
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC----------CCeEEEecCCccchhhh
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG----------RKFIRISLGGVKDEADI 282 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~----------~~~~~i~~~~~~~~s~l 282 (728)
..++|.++.++++.+.+... ...+++|+||||||||++++.+|..+. .+++.++++....
T Consensus 179 ~~~igr~~ei~~~~~~L~r~------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~a---- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLA---- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhc----
Confidence 36899999999999987532 345789999999999999999999873 4566665543211
Q ss_pred ccCccccccCCcchHHHHHhhcCCC-CcEEEEecccccCCCCC--C--CHHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 283 RGHRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVR--G--DPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 283 ~g~~~~yvG~~~g~l~~~~~~a~~~-~~VlllDEidkl~~~~~--~--~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
| .+|.|..+.++...+..+... +.|+|||||+.+..... + +..+.|...|.. ..+
T Consensus 249 -g--~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-----------------g~l 308 (821)
T CHL00095 249 -G--TKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-----------------GEL 308 (821)
T ss_pred -c--CCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-----------------CCc
Confidence 1 256777777777777654332 34899999998875331 1 234555555542 245
Q ss_pred EEEEecCCCC-----CCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccc
Q 004834 358 IFVATANRAQ-----PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAG 432 (728)
Q Consensus 358 i~I~TtN~~~-----~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G 432 (728)
.+|++||..+ ..+++|.+||+.|.++.|+.++...|++.. .+...+.++ +.++++++..+++...++.+
T Consensus 309 ~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l-~~~~e~~~~-----v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 309 QCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL-RSRYEKHHN-----LSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred EEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH-HHHHHHHcC-----CCCCHHHHHHHHHHhhccCc
Confidence 7888888764 578999999999999999999999888764 344444443 44899999988874444333
No 158
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.41 E-value=1.3e-12 Score=157.89 Aligned_cols=178 Identities=19% Similarity=0.290 Sum_probs=122.7
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh----------CCCeEEEecCCccchhhhc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEADIR 283 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l----------~~~~~~i~~~~~~~~s~l~ 283 (728)
.++|+++..+++.+.+.. ....+.+|+||||||||++++.+|..+ +.+++.++++....
T Consensus 174 ~~igr~~ei~~~~~~l~r------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a----- 242 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSR------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIA----- 242 (852)
T ss_pred cCCCcHHHHHHHHHHHhc------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhh-----
Confidence 699999998888887753 234578899999999999999999987 33455554433211
Q ss_pred cCccccccCCcchHHHHHhhcCC--CCcEEEEecccccCCCCCC----CHHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 284 GHRRTYIGSMPGRLIDGLKRVGV--CNPVMLLDEIDKTGSDVRG----DPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 284 g~~~~yvG~~~g~l~~~~~~a~~--~~~VlllDEidkl~~~~~~----~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
| ..|.|..+.++...+..... .+.|+||||++.+...... |..+.|...+. ...+
T Consensus 243 ~--~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-----------------~g~i 303 (852)
T TIGR03346 243 G--AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-----------------RGEL 303 (852)
T ss_pred c--chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-----------------cCce
Confidence 1 14667666677777665422 2459999999999753211 22333333332 2346
Q ss_pred EEEEecCCCC-----CCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHc
Q 004834 358 IFVATANRAQ-----PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRY 427 (728)
Q Consensus 358 i~I~TtN~~~-----~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~ 427 (728)
.+|++||..+ ..+++|.+||..|.++.|+.++...|++.. .++.-..++ +.++++++...+.-.
T Consensus 304 ~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~-~~~~e~~~~-----v~~~d~~i~~~~~ls 372 (852)
T TIGR03346 304 HCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL-KERYEVHHG-----VRITDPAIVAAATLS 372 (852)
T ss_pred EEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH-HHHhccccC-----CCCCHHHHHHHHHhc
Confidence 7888888763 579999999999999999999999998764 334333333 567888887777633
No 159
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.41 E-value=2.9e-12 Score=146.87 Aligned_cols=214 Identities=21% Similarity=0.333 Sum_probs=148.2
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccc---hhhhccCc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKD---EADIRGHR 286 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~---~s~l~g~~ 286 (728)
..++|.....+.+.+.+.... .....++|+|++|||||++|++|.... +.+|+.++|....+ .+++.|+.
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~ 262 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHV 262 (509)
T ss_pred CceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCcc
Confidence 468899988888888776543 334579999999999999999999886 46899999998754 35667765
Q ss_pred cc-cccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCC
Q 004834 287 RT-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR 365 (728)
Q Consensus 287 ~~-yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~ 365 (728)
++ +.|+.... ...+..+ .++.+|||||+.+++.. +..|+++|+........+. ...++ ++-+|+|||.
T Consensus 263 ~g~~~ga~~~~-~g~~~~a--~gGtL~ldeI~~L~~~~----Q~~Ll~~l~~~~~~~~g~~-~~~~~---~~RiI~~t~~ 331 (509)
T PRK05022 263 KGAFTGAISNR-SGKFELA--DGGTLFLDEIGELPLAL----QAKLLRVLQYGEIQRVGSD-RSLRV---DVRVIAATNR 331 (509)
T ss_pred ccccCCCcccC-Ccchhhc--CCCEEEecChhhCCHHH----HHHHHHHHhcCCEeeCCCC-cceec---ceEEEEecCC
Confidence 43 22322111 0112222 35799999999999877 8999999986543222221 12222 4568888876
Q ss_pred C-------CCCChhhhCCeeE--EEcCCCCH--HHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchH
Q 004834 366 A-------QPIPPPLLDRMEV--IELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVR 434 (728)
Q Consensus 366 ~-------~~l~~~Ll~R~~v--I~~~~~t~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R 434 (728)
. ..|.+.|..|+.+ |.+|++.. ++.-.+++. +..+...+++. ..+.++++++..|.. |.+..++|
T Consensus 332 ~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~-fl~~~~~~~~~--~~~~~s~~a~~~L~~-y~WPGNvr 407 (509)
T PRK05022 332 DLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGY-FLEQNRARLGL--RSLRLSPAAQAALLA-YDWPGNVR 407 (509)
T ss_pred CHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHH-HHHHHHHHcCC--CCCCCCHHHHHHHHh-CCCCCcHH
Confidence 4 3689999999963 77777765 344444444 44445555543 346899999998865 88889999
Q ss_pred HHHHHHHHHHH
Q 004834 435 NLERNLAALAR 445 (728)
Q Consensus 435 ~L~~~I~~l~r 445 (728)
+|++.|++.|-
T Consensus 408 EL~~~i~ra~~ 418 (509)
T PRK05022 408 ELEHVISRAAL 418 (509)
T ss_pred HHHHHHHHHHH
Confidence 99999988773
No 160
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.41 E-value=1.8e-12 Score=133.86 Aligned_cols=164 Identities=16% Similarity=0.284 Sum_probs=106.7
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecccc
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDK 318 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidk 318 (728)
.+++++|+||||||||+|++++++.+.....++.+-...... .+ ...+.+.+.. ..+++|||++.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~-------~~----~~~~~~~~~~----~dlliiDdi~~ 108 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRA-------WF----VPEVLEGMEQ----LSLVCIDNIEC 108 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHh-------hh----hHHHHHHhhh----CCEEEEeChhh
Confidence 346899999999999999999998875332222221111100 00 0122223322 25999999999
Q ss_pred cCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCc-EEEEecCCCCC---CChhhhCCe---eEEEcCCCCHHHHH
Q 004834 319 TGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV-IFVATANRAQP---IPPPLLDRM---EVIELPGYTPEEKL 391 (728)
Q Consensus 319 l~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v-i~I~TtN~~~~---l~~~Ll~R~---~vI~~~~~t~ee~~ 391 (728)
+..+. .....|+.+++... +..++ +++++++.+.. +.|.|++|| .++.+.+|+.+++.
T Consensus 109 ~~~~~--~~~~~lf~l~n~~~-------------e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~ 173 (235)
T PRK08084 109 IAGDE--LWEMAIFDLYNRIL-------------ESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKL 173 (235)
T ss_pred hcCCH--HHHHHHHHHHHHHH-------------HcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHH
Confidence 86542 12456667765321 11222 44444455444 679999999 58999999999999
Q ss_pred HHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHH
Q 004834 392 RIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 392 ~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
+++++.. ... ++.++++++++|++++.+ .+|.+...++.+-
T Consensus 174 ~~l~~~a-----~~~-----~~~l~~~v~~~L~~~~~~--d~r~l~~~l~~l~ 214 (235)
T PRK08084 174 QALQLRA-----RLR-----GFELPEDVGRFLLKRLDR--EMRTLFMTLDQLD 214 (235)
T ss_pred HHHHHHH-----HHc-----CCCCCHHHHHHHHHhhcC--CHHHHHHHHHHHH
Confidence 9987753 222 378999999999998864 5677777777753
No 161
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.40 E-value=2.4e-12 Score=141.39 Aligned_cols=164 Identities=19% Similarity=0.246 Sum_probs=108.8
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCC--CeEEEe---cCCccchhhhc-cCcc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR--KFIRIS---LGGVKDEADIR-GHRR 287 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~--~~~~i~---~~~~~~~s~l~-g~~~ 287 (728)
++++-++..+.+...+. .+.+++|+||||||||++|+.+|..+.. .+.++. +....+..+.+ |.++
T Consensus 176 d~~i~e~~le~l~~~L~--------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP 247 (459)
T PRK11331 176 DLFIPETTIETILKRLT--------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP 247 (459)
T ss_pred cccCCHHHHHHHHHHHh--------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC
Confidence 46666777777766553 3567999999999999999999999853 233333 33333444444 6777
Q ss_pred ccccCCc--chHHHHHhhcC---CCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccc---cccCCC----CeeecCC
Q 004834 288 TYIGSMP--GRLIDGLKRVG---VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKT---FNDHYL----NVPFDLS 355 (728)
Q Consensus 288 ~yvG~~~--g~l~~~~~~a~---~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~---~~d~~~----~~~~d~~ 355 (728)
.++|+.. |.+.+.+..+. ..+.|+|||||+....+. .+..++++|+...... ..-.|. +.-.-.+
T Consensus 248 ~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k---iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~ 324 (459)
T PRK11331 248 NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK---VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPE 324 (459)
T ss_pred CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH---hhhhhhhhccccccccccceeeeccccccccccCCC
Confidence 7777653 55555555543 223499999999988643 1567788888542110 000000 1112246
Q ss_pred CcEEEEecCCCC----CCChhhhCCeeEEEcCC-CCHH
Q 004834 356 KVIFVATANRAQ----PIPPPLLDRMEVIELPG-YTPE 388 (728)
Q Consensus 356 ~vi~I~TtN~~~----~l~~~Ll~R~~vI~~~~-~t~e 388 (728)
|+.||+|+|..+ .++.||++||.+|++.+ ++.+
T Consensus 325 Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~ 362 (459)
T PRK11331 325 NVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTP 362 (459)
T ss_pred CeEEEEecCccccchhhccHHHHhhhheEEecCCCChH
Confidence 889999999987 79999999999988876 4443
No 162
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.38 E-value=4.2e-12 Score=144.58 Aligned_cols=212 Identities=20% Similarity=0.311 Sum_probs=142.4
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHH-----------hCCCeEEEecCCccc---h
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASA-----------LGRKFIRISLGGVKD---E 279 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~-----------l~~~~~~i~~~~~~~---~ 279 (728)
+++|.....+.+.+.+.... .....++++|+|||||+++|++|... -+.||+.++|+...+ .
T Consensus 220 ~iiG~S~~m~~~~~~i~~~A----~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lle 295 (538)
T PRK15424 220 DLLGQSPQMEQVRQTILLYA----RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLE 295 (538)
T ss_pred heeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHH
Confidence 58899888888877665332 23457999999999999999999987 256999999997643 4
Q ss_pred hhhccCccc-cccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcE
Q 004834 280 ADIRGHRRT-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 358 (728)
Q Consensus 280 s~l~g~~~~-yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi 358 (728)
+++.|+..+ +.|+..+.-...+..+ .++.||||||+.+++.. +..|+++|+..+......+ ...++ ++-
T Consensus 296 seLFG~~~gaftga~~~~~~Gl~e~A--~gGTLfLdeI~~Lp~~~----Q~kLl~~L~e~~~~r~G~~-~~~~~---dvR 365 (538)
T PRK15424 296 AELFGYEEGAFTGSRRGGRAGLFEIA--HGGTLFLDEIGEMPLPL----QTRLLRVLEEKEVTRVGGH-QPVPV---DVR 365 (538)
T ss_pred HHhcCCccccccCccccccCCchhcc--CCCEEEEcChHhCCHHH----HHHHHhhhhcCeEEecCCC-ceecc---ceE
Confidence 567776543 2333211111122222 35799999999999887 8999999987554333222 12333 345
Q ss_pred EEEecCCC-------CCCChhhhCCee--EEEcCCCCH--HHHHHHHHHhhchHHHhhcCCCccccccCHHHHH------
Q 004834 359 FVATANRA-------QPIPPPLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVK------ 421 (728)
Q Consensus 359 ~I~TtN~~-------~~l~~~Ll~R~~--vI~~~~~t~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~------ 421 (728)
+|++||.. ..|.+.|..|+. .|.+|++.+ ++...++..++. +.....+ ..++++++.
T Consensus 366 iIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~-~~~~~~~-----~~~~~~a~~~~~~a~ 439 (538)
T PRK15424 366 VISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLK-QSLAALS-----APFSAALRQGLQQCE 439 (538)
T ss_pred EEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHH-HHHHHcC-----CCCCHHHHHhhHHHH
Confidence 77887764 257888888986 477777765 455556666553 3322222 246676663
Q ss_pred HHHHHcccccchHHHHHHHHHHHH
Q 004834 422 LVIQRYTREAGVRNLERNLAALAR 445 (728)
Q Consensus 422 ~l~~~~~~~~G~R~L~~~I~~l~r 445 (728)
.+...|.+..++|+|++.++++|-
T Consensus 440 ~~L~~y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 440 TLLLHYDWPGNVRELRNLMERLAL 463 (538)
T ss_pred HHHHhCCCCchHHHHHHHHHHHHH
Confidence 344579999999999999988773
No 163
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.37 E-value=9.6e-12 Score=134.54 Aligned_cols=215 Identities=19% Similarity=0.315 Sum_probs=144.9
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCccc---hhhhccCc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKD---EADIRGHR 286 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~~---~s~l~g~~ 286 (728)
.+++|.+...+.+.+.+.... .....|+++|++||||+++|++|..... .+|+.++|....+ .+.+.|+.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a----~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~ 81 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLA----PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHE 81 (326)
T ss_pred CccEECCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHcccc
Confidence 357888888888887765443 2345688999999999999999987764 5899999998643 24455655
Q ss_pred cc-cccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCC
Q 004834 287 RT-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR 365 (728)
Q Consensus 287 ~~-yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~ 365 (728)
.+ +.|..... ...+..+ .++.+|||||+.++... +..|+++++..+...... ..+.. .++.+|+|++.
T Consensus 82 ~~~~~g~~~~~-~g~l~~a--~gGtL~l~~i~~L~~~~----Q~~L~~~l~~~~~~~~g~---~~~~~-~~~RiI~~s~~ 150 (326)
T PRK11608 82 AGAFTGAQKRH-PGRFERA--DGGTLFLDELATAPMLV----QEKLLRVIEYGELERVGG---SQPLQ-VNVRLVCATNA 150 (326)
T ss_pred ccccCCccccc-CCchhcc--CCCeEEeCChhhCCHHH----HHHHHHHHhcCcEEeCCC---Cceee-ccEEEEEeCch
Confidence 32 22222111 1122222 35799999999999887 899999998643221111 11111 24568888776
Q ss_pred C-------CCCChhhhCCee--EEEcCCCCH--HHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchH
Q 004834 366 A-------QPIPPPLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVR 434 (728)
Q Consensus 366 ~-------~~l~~~Ll~R~~--vI~~~~~t~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R 434 (728)
. ..|.+.|..||. .|.+|++.. +++..++..++. +...+++.. ....++++++..|.. |.+..++|
T Consensus 151 ~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~-~~~~~~~~~-~~~~~s~~al~~L~~-y~WPGNvr 227 (326)
T PRK11608 151 DLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAI-QMCRELGLP-LFPGFTERARETLLN-YRWPGNIR 227 (326)
T ss_pred hHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHH-HHHHHhCCC-CCCCCCHHHHHHHHh-CCCCcHHH
Confidence 4 478899999995 588888866 455666666553 334444421 014689999998865 88889999
Q ss_pred HHHHHHHHHHH
Q 004834 435 NLERNLAALAR 445 (728)
Q Consensus 435 ~L~~~I~~l~r 445 (728)
+|++.++..|.
T Consensus 228 EL~~vl~~a~~ 238 (326)
T PRK11608 228 ELKNVVERSVY 238 (326)
T ss_pred HHHHHHHHHHH
Confidence 99988888763
No 164
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.36 E-value=3.2e-11 Score=134.11 Aligned_cols=213 Identities=18% Similarity=0.183 Sum_probs=130.3
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh-----CCCeEEEecCCccchhh------
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL-----GRKFIRISLGGVKDEAD------ 281 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l-----~~~~~~i~~~~~~~~s~------ 281 (728)
..++|.++..+.+..++..... ...+++++++||||||||++++.+++.+ +..++.+++....+...
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 4577888888888887754321 2445678999999999999999999887 34567777765433221
Q ss_pred --hccCccccccCCcchHHHHHhhc---CCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCC
Q 004834 282 --IRGHRRTYIGSMPGRLIDGLKRV---GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 356 (728)
Q Consensus 282 --l~g~~~~yvG~~~g~l~~~~~~a---~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~ 356 (728)
+.+......|.....+.+.+... .....||+|||+|.+......+....|+..++.. ..++
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~--------------~~~~ 173 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY--------------PGAR 173 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc--------------CCCe
Confidence 22211111222222333332221 1122489999999997222222234444443311 1135
Q ss_pred cEEEEecCCCC---CCChhhhCCee--EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHccccc
Q 004834 357 VIFVATANRAQ---PIPPPLLDRME--VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 431 (728)
Q Consensus 357 vi~I~TtN~~~---~l~~~Ll~R~~--vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~ 431 (728)
+.+|+++|..+ .+++.+.+|+. .|.|++|+.++..+|++.++. .+.. ...+++++++.+++...+..
T Consensus 174 v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~------~~~~--~~~~~~~~l~~i~~~~~~~~ 245 (394)
T PRK00411 174 IGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE------EGFY--PGVVDDEVLDLIADLTAREH 245 (394)
T ss_pred EEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH------hhcc--cCCCCHhHHHHHHHHHHHhc
Confidence 67888888763 57888888883 799999999999999988752 1111 23579999999988664433
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 004834 432 GVRNLERNLAALARAAAVKVA 452 (728)
Q Consensus 432 G~R~L~~~I~~l~r~a~~~~~ 452 (728)
| .+ |.+-.+|+.|+..+.
T Consensus 246 G--d~-r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 246 G--DA-RVAIDLLRRAGLIAE 263 (394)
T ss_pred C--cH-HHHHHHHHHHHHHHH
Confidence 3 22 333356665554443
No 165
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.36 E-value=1.1e-11 Score=141.89 Aligned_cols=179 Identities=20% Similarity=0.245 Sum_probs=112.3
Q ss_pred HHHHHhhhccccchHHHHHHHHHHHHhhccCC------CCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccc
Q 004834 205 KAAKERLDSDHYGLVRVKQRIIEYLAVRKLKP------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKD 278 (728)
Q Consensus 205 ~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~------~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~ 278 (728)
..+...+...++|++.+|..+.-.+....... -....++||+|+||||||++|+.+++...+..+.. ..+ .+
T Consensus 195 ~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~-~~~-~~ 272 (509)
T smart00350 195 ERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTT-GKG-SS 272 (509)
T ss_pred HHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcC-CCC-CC
Confidence 34566777889999999888877664421110 01123899999999999999999999886542211 000 11
Q ss_pred hhhhccCc--cccccC---CcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeec
Q 004834 279 EADIRGHR--RTYIGS---MPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD 353 (728)
Q Consensus 279 ~s~l~g~~--~~yvG~---~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d 353 (728)
...+.+.. ....|. .+|.+ . ...+++++|||++++.++. ++.|++.|+..+.. + ...|....
T Consensus 273 ~~~l~~~~~~~~~~g~~~~~~G~l----~--~A~~Gil~iDEi~~l~~~~----q~~L~e~me~~~i~-i--~k~G~~~~ 339 (509)
T smart00350 273 AVGLTAAVTRDPETREFTLEGGAL----V--LADNGVCCIDEFDKMDDSD----RTAIHEAMEQQTIS-I--AKAGITTT 339 (509)
T ss_pred cCCccccceEccCcceEEecCccE----E--ecCCCEEEEechhhCCHHH----HHHHHHHHhcCEEE-E--EeCCEEEE
Confidence 11111100 000111 11211 1 1235699999999998876 89999999854321 1 11133222
Q ss_pred C-CCcEEEEecCCCC-------------CCChhhhCCee-E-EEcCCCCHHHHHHHHHHhh
Q 004834 354 L-SKVIFVATANRAQ-------------PIPPPLLDRME-V-IELPGYTPEEKLRIAMRHL 398 (728)
Q Consensus 354 ~-~~vi~I~TtN~~~-------------~l~~~Ll~R~~-v-I~~~~~t~ee~~~Il~~~l 398 (728)
+ ..+.+|+|+|+.. .+++++++||+ + +..+.++.+...+|+++.+
T Consensus 340 l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 340 LNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred ecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHH
Confidence 2 3578999999863 69999999998 3 5667788888888887643
No 166
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.35 E-value=1.9e-12 Score=146.39 Aligned_cols=170 Identities=18% Similarity=0.296 Sum_probs=111.7
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCC-----CeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEec
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGR-----KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 315 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~-----~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDE 315 (728)
..++|+||||||||+|++++|+.+.. ..+.+++..+. .++...-. ......+.+.++ ...+|+|||
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~--~~~~~~~~---~~~~~~~~~~~~----~~dlLiiDD 219 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT--NDFVNALR---NNTMEEFKEKYR----SVDVLLIDD 219 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH--HHHHHHHH---cCcHHHHHHHHh----cCCEEEEeh
Confidence 46899999999999999999998832 23444433321 11111000 000112222222 245999999
Q ss_pred ccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC---CCChhhhCCee---EEEcCCCCHHH
Q 004834 316 IDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ---PIPPPLLDRME---VIELPGYTPEE 389 (728)
Q Consensus 316 idkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~---~l~~~Ll~R~~---vI~~~~~t~ee 389 (728)
++.+..+. ..+..|+.+++..... ...++|++.+.+. .+++.|.+||. ++.+.+|+.++
T Consensus 220 i~~l~~~~--~~~~~l~~~~n~l~~~-------------~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~ 284 (450)
T PRK00149 220 IQFLAGKE--RTQEEFFHTFNALHEA-------------GKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLET 284 (450)
T ss_pred hhhhcCCH--HHHHHHHHHHHHHHHC-------------CCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHH
Confidence 99986542 1256778777643211 1224444444443 37799999994 79999999999
Q ss_pred HHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHHH
Q 004834 390 KLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARA 446 (728)
Q Consensus 390 ~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~ 446 (728)
+.+|++.... . .++.++++++++|++++. ..+|.|+..|.++...
T Consensus 285 r~~il~~~~~-----~-----~~~~l~~e~l~~ia~~~~--~~~R~l~~~l~~l~~~ 329 (450)
T PRK00149 285 RIAILKKKAE-----E-----EGIDLPDEVLEFIAKNIT--SNVRELEGALNRLIAY 329 (450)
T ss_pred HHHHHHHHHH-----H-----cCCCCCHHHHHHHHcCcC--CCHHHHHHHHHHHHHH
Confidence 9999998742 1 247899999999999875 4678888888888754
No 167
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.35 E-value=2.7e-12 Score=143.28 Aligned_cols=172 Identities=20% Similarity=0.294 Sum_probs=113.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhC-----CCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEe
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALG-----RKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLD 314 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~-----~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllD 314 (728)
...++|+||||+|||+|++++++.+. ..++.+++..+. .++...-.. + ....+.+.++ ...+|+||
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~--~~~~~~~~~--~-~~~~~~~~~~----~~dlLiiD 206 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT--NDFVNALRN--N-KMEEFKEKYR----SVDLLLID 206 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH--HHHHHHHHc--C-CHHHHHHHHH----hCCEEEEe
Confidence 34689999999999999999999872 344455443321 111110000 0 0112222232 23599999
Q ss_pred cccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC---CCChhhhCCee---EEEcCCCCHH
Q 004834 315 EIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ---PIPPPLLDRME---VIELPGYTPE 388 (728)
Q Consensus 315 Eidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~---~l~~~Ll~R~~---vI~~~~~t~e 388 (728)
|++.+.... ..+..|+.+++..... ...++|++.+.+. .+++.|.+||. ++.|++|+.+
T Consensus 207 Di~~l~~~~--~~~~~l~~~~n~~~~~-------------~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~ 271 (405)
T TIGR00362 207 DIQFLAGKE--RTQEEFFHTFNALHEN-------------GKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLE 271 (405)
T ss_pred hhhhhcCCH--HHHHHHHHHHHHHHHC-------------CCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHH
Confidence 999986542 1256788877643211 1224444443443 46789999995 6999999999
Q ss_pred HHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHHHH
Q 004834 389 EKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAA 447 (728)
Q Consensus 389 e~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~a 447 (728)
++..|++..+.. .++.++++++++|++++. ..+|.|+..|.+++..+
T Consensus 272 ~r~~il~~~~~~----------~~~~l~~e~l~~ia~~~~--~~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 272 TRLAILQKKAEE----------EGLELPDEVLEFIAKNIR--SNVRELEGALNRLLAYA 318 (405)
T ss_pred HHHHHHHHHHHH----------cCCCCCHHHHHHHHHhcC--CCHHHHHHHHHHHHHHH
Confidence 999999987421 247899999999998775 45789999999888654
No 168
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.34 E-value=2.6e-11 Score=124.51 Aligned_cols=170 Identities=15% Similarity=0.223 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccchhhhccCccccccCCcc
Q 004834 219 VRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSMPG 295 (728)
Q Consensus 219 ~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g 295 (728)
+.+...+..+.. .......++|+||||||||+||+++++.+ +.++..+++.....
T Consensus 26 ~~~~~~l~~~~~-----~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~----------------- 83 (227)
T PRK08903 26 AELVARLRELAA-----GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL----------------- 83 (227)
T ss_pred HHHHHHHHHHHh-----ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH-----------------
Confidence 444555555433 12345679999999999999999999886 44555555443211
Q ss_pred hHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC---CCChh
Q 004834 296 RLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ---PIPPP 372 (728)
Q Consensus 296 ~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~---~l~~~ 372 (728)
.+... ....+++|||++.+.... +..|+.+++..+. ....++|.|++... .+.+.
T Consensus 84 ----~~~~~-~~~~~liiDdi~~l~~~~----~~~L~~~~~~~~~-------------~~~~~vl~~~~~~~~~~~l~~~ 141 (227)
T PRK08903 84 ----AFDFD-PEAELYAVDDVERLDDAQ----QIALFNLFNRVRA-------------HGQGALLVAGPAAPLALPLRED 141 (227)
T ss_pred ----HHhhc-ccCCEEEEeChhhcCchH----HHHHHHHHHHHHH-------------cCCcEEEEeCCCCHHhCCCCHH
Confidence 00111 124599999999986544 7788888864221 11234555555432 46688
Q ss_pred hhCCe---eEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHH
Q 004834 373 LLDRM---EVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 373 Ll~R~---~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
|++|| ..+.+++|+.++...++.... ... ++.++++++++|++.+. .++|.|.+.++.+-
T Consensus 142 L~sr~~~~~~i~l~pl~~~~~~~~l~~~~-----~~~-----~v~l~~~al~~L~~~~~--gn~~~l~~~l~~l~ 204 (227)
T PRK08903 142 LRTRLGWGLVYELKPLSDADKIAALKAAA-----AER-----GLQLADEVPDYLLTHFR--RDMPSLMALLDALD 204 (227)
T ss_pred HHHHHhcCeEEEecCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHhcc--CCHHHHHHHHHHHH
Confidence 88898 479999999988887776542 222 37899999999999544 56778877777754
No 169
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.34 E-value=1.5e-11 Score=140.13 Aligned_cols=212 Identities=24% Similarity=0.327 Sum_probs=144.8
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccc---hhhhccCcc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKD---EADIRGHRR 287 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~---~s~l~g~~~ 287 (728)
+++|.....+.+.+.+.... .....+++.|+|||||+++|++|.... +.||+.++|+...+ .+++.|+..
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~ 288 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYA----RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEE 288 (526)
T ss_pred heeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcc
Confidence 58899888888877665332 234579999999999999999999875 46999999987644 456677654
Q ss_pred c-cccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC
Q 004834 288 T-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA 366 (728)
Q Consensus 288 ~-yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~ 366 (728)
+ +.|+..+.-...+..+ .++.+|||||+.++... +..|+++|+..+..+..... ..++| +-+|+|||..
T Consensus 289 gaftga~~~~~~Gl~e~A--~gGTLfLdeI~~Lp~~~----Q~~Ll~~L~~~~~~r~g~~~-~~~~d---vRiIaat~~~ 358 (526)
T TIGR02329 289 GAFTGARRGGRTGLIEAA--HRGTLFLDEIGEMPLPL----QTRLLRVLEEREVVRVGGTE-PVPVD---VRVVAATHCA 358 (526)
T ss_pred cccccccccccccchhhc--CCceEEecChHhCCHHH----HHHHHHHHhcCcEEecCCCc-eeeec---ceEEeccCCC
Confidence 3 2333211111122222 35799999999999887 89999999875443332221 23333 4577877764
Q ss_pred -------CCCChhhhCCee--EEEcCCCCH--HHHHHHHHHhhchHHHhhcCCCccccccCHHHHHH------HHHHccc
Q 004834 367 -------QPIPPPLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKL------VIQRYTR 429 (728)
Q Consensus 367 -------~~l~~~Ll~R~~--vI~~~~~t~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~------l~~~~~~ 429 (728)
..|.+.|..|+. .|.+|++.+ ++...++..++. +.....+ +.++++++.. ....|.+
T Consensus 359 l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~-~~~~~~~-----~~~~~~a~~~~~~~~~~L~~y~W 432 (526)
T TIGR02329 359 LTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLV-QAAAALR-----LPDSEAAAQVLAGVADPLQRYPW 432 (526)
T ss_pred HHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHH-HHHHHcC-----CCCCHHHHHHhHHHHHHHHhCCC
Confidence 267788888996 588888766 455556666553 3333332 4588888876 1356899
Q ss_pred ccchHHHHHHHHHHHH
Q 004834 430 EAGVRNLERNLAALAR 445 (728)
Q Consensus 430 ~~G~R~L~~~I~~l~r 445 (728)
..++|+|++.++++|-
T Consensus 433 PGNvrEL~nvier~~i 448 (526)
T TIGR02329 433 PGNVRELRNLVERLAL 448 (526)
T ss_pred CchHHHHHHHHHHHHH
Confidence 9999999999988773
No 170
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.33 E-value=4.1e-12 Score=144.71 Aligned_cols=169 Identities=21% Similarity=0.319 Sum_probs=113.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCC-----CeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecc
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGR-----KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEI 316 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~-----~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEi 316 (728)
.++|+|++|+|||+|+.+||+.+.. ....+++..+. .++. ........+.|+..-....+|+||+|
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~--~el~-------~al~~~~~~~f~~~y~~~DLLlIDDI 386 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT--NEFI-------NSIRDGKGDSFRRRYREMDILLVDDI 386 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH--HHHH-------HHHHhccHHHHHHHhhcCCEEEEehh
Confidence 4899999999999999999998732 23333332221 1111 11111111223322222469999999
Q ss_pred cccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC----CCCChhhhCCee---EEEcCCCCHHH
Q 004834 317 DKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA----QPIPPPLLDRME---VIELPGYTPEE 389 (728)
Q Consensus 317 dkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~----~~l~~~Ll~R~~---vI~~~~~t~ee 389 (728)
+.+..+. ..+..|+.+++...+. .+ .+|.|+|.. ..+++.|.+||. ++.+..|+.+.
T Consensus 387 q~l~gke--~tqeeLF~l~N~l~e~-------------gk-~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~Et 450 (617)
T PRK14086 387 QFLEDKE--STQEEFFHTFNTLHNA-------------NK-QIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELET 450 (617)
T ss_pred ccccCCH--HHHHHHHHHHHHHHhc-------------CC-CEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHH
Confidence 9986543 1257788888753321 12 244577664 368899999995 69999999999
Q ss_pred HHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHHHH
Q 004834 390 KLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAA 447 (728)
Q Consensus 390 ~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~a 447 (728)
|..|++++.. . .++.++++++++|+.++.+ .+|.|+..|.++...+
T Consensus 451 R~aIL~kka~-----~-----r~l~l~~eVi~yLa~r~~r--nvR~LegaL~rL~a~a 496 (617)
T PRK14086 451 RIAILRKKAV-----Q-----EQLNAPPEVLEFIASRISR--NIRELEGALIRVTAFA 496 (617)
T ss_pred HHHHHHHHHH-----h-----cCCCCCHHHHHHHHHhccC--CHHHHHHHHHHHHHHH
Confidence 9999998742 1 2478999999999998864 5889999988887543
No 171
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.33 E-value=2e-11 Score=131.03 Aligned_cols=195 Identities=19% Similarity=0.273 Sum_probs=123.6
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCC-------CeEEEec----CCccch---
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR-------KFIRISL----GGVKDE--- 279 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~-------~~~~i~~----~~~~~~--- 279 (728)
+++|++++++++.+++.........+...++|+|||||||||+|++|++.++. +++.+.. +..++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~ 131 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLH 131 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcc
Confidence 79999999999999998766544456678999999999999999999999976 8888877 222110
Q ss_pred ----------hhhccCcc-----------------ccccCCc----------------------c-----hHHHHHh---
Q 004834 280 ----------ADIRGHRR-----------------TYIGSMP----------------------G-----RLIDGLK--- 302 (728)
Q Consensus 280 ----------s~l~g~~~-----------------~yvG~~~----------------------g-----~l~~~~~--- 302 (728)
.+-.|.++ .|-|... + .+...+-
T Consensus 132 l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~~L~G~vd 211 (361)
T smart00763 132 LFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDISELTGKVD 211 (361)
T ss_pred cCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHHHHhcccC
Confidence 00001100 0101000 0 0110000
Q ss_pred -----h---------------cCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCC-CCeeecCCCcEEEE
Q 004834 303 -----R---------------VGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHY-LNVPFDLSKVIFVA 361 (728)
Q Consensus 303 -----~---------------a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~-~~~~~d~~~vi~I~ 361 (728)
. ...+++++-++|+.|+..+. +..||.+++++... .+.+ ...++|. +||+
T Consensus 212 ~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~----l~~LL~~~qE~~v~--~~~~~~~~~~d~---liia 282 (361)
T smart00763 212 IRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKF----LHPLLTATQEGNIK--GTGGFAMIPIDG---LIIA 282 (361)
T ss_pred HHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHH----HHHHhhhhhcceEe--cCCcccccccce---EEEE
Confidence 0 01123588899999998887 89999999875321 1111 1223333 8889
Q ss_pred ecCCCC-------CCChhhhCCeeEEEcCCCCH-HHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHH
Q 004834 362 TANRAQ-------PIPPPLLDRMEVIELPGYTP-EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVI 424 (728)
Q Consensus 362 TtN~~~-------~l~~~Ll~R~~vI~~~~~t~-ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~ 424 (728)
|||..+ ...++|++||.+|.++.+.. .+-.+|.++.+.. .. .....+.+.+++.++
T Consensus 283 ~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~l~~~~E~~Iy~k~~~~-----s~--~~~~~~aP~~le~aa 346 (361)
T smart00763 283 HSNESEWQRFKSNKKNEALLDRIIKVKVPYCLRVSEEAQIYEKLLRN-----SD--LTEAHIAPHTLEMAA 346 (361)
T ss_pred eCCHHHHhhhhccccchhhhhceEEEeCCCcCCHHHHHHHHHHHhcc-----Cc--CcccccCchHHHHHH
Confidence 999873 67899999999999987654 6666777776431 11 113456666555443
No 172
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.32 E-value=4.1e-11 Score=125.09 Aligned_cols=88 Identities=25% Similarity=0.384 Sum_probs=71.8
Q ss_pred CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC------------CCCChhhhC
Q 004834 308 NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA------------QPIPPPLLD 375 (728)
Q Consensus 308 ~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~------------~~l~~~Ll~ 375 (728)
++|+||||++.+.-.. ++.|.+.|+. ++.. ++|++||++ ..+|..|+|
T Consensus 292 pGVLFIDEvHmLDIE~----FsFlnrAlEs---------------e~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD 351 (450)
T COG1224 292 PGVLFIDEVHMLDIEC----FSFLNRALES---------------ELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLD 351 (450)
T ss_pred cceEEEechhhhhHHH----HHHHHHHhhc---------------ccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhh
Confidence 3499999999997766 7888888874 2333 566788874 479999999
Q ss_pred CeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHH
Q 004834 376 RMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQ 425 (728)
Q Consensus 376 R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~ 425 (728)
|+-+|...+|+.++...|++... ....+.++++++++|++
T Consensus 352 RllII~t~py~~~EireIi~iRa----------~ee~i~l~~~Ale~L~~ 391 (450)
T COG1224 352 RLLIISTRPYSREEIREIIRIRA----------KEEDIELSDDALEYLTD 391 (450)
T ss_pred heeEEecCCCCHHHHHHHHHHhh----------hhhccccCHHHHHHHHh
Confidence 99999999999999999998873 23458899999999987
No 173
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.32 E-value=2.3e-11 Score=124.59 Aligned_cols=176 Identities=19% Similarity=0.312 Sum_probs=116.1
Q ss_pred chHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCccchhhhccCccccccCC
Q 004834 217 GLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKDEADIRGHRRTYIGSM 293 (728)
Q Consensus 217 G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~~~s~l~g~~~~yvG~~ 293 (728)
+.+.+.+++..++. ...+.+++|+||||||||++|+++++.+. .+++.+++....+..
T Consensus 21 ~~~~~~~~l~~~~~------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~------------- 81 (226)
T TIGR03420 21 GNAELLAALRQLAA------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD------------- 81 (226)
T ss_pred CcHHHHHHHHHHHh------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH-------------
Confidence 45556666666543 23456899999999999999999998874 456666655432110
Q ss_pred cchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCC-CCC--C-
Q 004834 294 PGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR-AQP--I- 369 (728)
Q Consensus 294 ~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~-~~~--l- 369 (728)
..+...+. ...+++|||++.+.... +.+..|+.+++.... .+..+|.|+|. +.. +
T Consensus 82 -~~~~~~~~----~~~lLvIDdi~~l~~~~--~~~~~L~~~l~~~~~--------------~~~~iIits~~~~~~~~~~ 140 (226)
T TIGR03420 82 -PEVLEGLE----QADLVCLDDVEAIAGQP--EWQEALFHLYNRVRE--------------AGGRLLIAGRAAPAQLPLR 140 (226)
T ss_pred -HHHHhhcc----cCCEEEEeChhhhcCCh--HHHHHHHHHHHHHHH--------------cCCeEEEECCCChHHCCcc
Confidence 01111111 23599999999986532 125677777753211 11134556654 332 2
Q ss_pred ChhhhCCee---EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHH
Q 004834 370 PPPLLDRME---VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 370 ~~~Ll~R~~---vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
.+.|.+|+. .|.+++|+.+++..+++.+. ... .+.++++++..|++. ...++|.|++.++.+-
T Consensus 141 ~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~-----~~~-----~~~~~~~~l~~L~~~--~~gn~r~L~~~l~~~~ 206 (226)
T TIGR03420 141 LPDLRTRLAWGLVFQLPPLSDEEKIAALQSRA-----ARR-----GLQLPDEVADYLLRH--GSRDMGSLMALLDALD 206 (226)
T ss_pred cHHHHHHHhcCeeEecCCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHh--ccCCHHHHHHHHHHHH
Confidence 278888873 69999999999999987653 122 367999999999985 3467888888887755
No 174
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.32 E-value=9.9e-12 Score=131.93 Aligned_cols=88 Identities=30% Similarity=0.421 Sum_probs=61.4
Q ss_pred CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC------------CCCChhhhC
Q 004834 308 NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA------------QPIPPPLLD 375 (728)
Q Consensus 308 ~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~------------~~l~~~Ll~ 375 (728)
++|+||||++.+...+ ++-|...|+. +++. ++|++||+. ..+|..|++
T Consensus 279 pGVLFIDEvHmLDiEc----FsfLnralEs---------------~~sP-iiIlATNRg~~~irGt~~~sphGiP~DlLD 338 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIEC----FSFLNRALES---------------ELSP-IIILATNRGITKIRGTDIISPHGIPLDLLD 338 (398)
T ss_dssp E-EEEEESGGGSBHHH----HHHHHHHHTS---------------TT---EEEEEES-SEEE-BTTS-EEETT--HHHHT
T ss_pred cceEEecchhhccHHH----HHHHHHHhcC---------------CCCc-EEEEecCceeeeccCccCcCCCCCCcchHh
Confidence 3499999999998877 8888888874 2343 455777764 479999999
Q ss_pred CeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHH
Q 004834 376 RMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQ 425 (728)
Q Consensus 376 R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~ 425 (728)
|+-+|...+|+.++..+|++... + .+.+.+++++++.|.+
T Consensus 339 RllII~t~py~~~ei~~Il~iR~-----~-----~E~v~i~~~al~~L~~ 378 (398)
T PF06068_consen 339 RLLIIRTKPYSEEEIKQILKIRA-----K-----EEDVEISEDALDLLTK 378 (398)
T ss_dssp TEEEEEE----HHHHHHHHHHHH-----H-----HCT--B-HHHHHHHHH
T ss_pred hcEEEECCCCCHHHHHHHHHhhh-----h-----hhcCcCCHHHHHHHHH
Confidence 99999999999999999998873 2 3458999999999986
No 175
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.32 E-value=7.4e-12 Score=135.94 Aligned_cols=214 Identities=20% Similarity=0.312 Sum_probs=146.5
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh----CCCeEEEecCCccc---hhhhccC
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----GRKFIRISLGGVKD---EADIRGH 285 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l----~~~~~~i~~~~~~~---~s~l~g~ 285 (728)
.+++|.+...+++.+.+.. -.+.+.++|+.|++||||+.+|+.|.... ..||+.++|+.+.. .+++.||
T Consensus 78 ~~LIG~~~~~~~~~eqik~----~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~ 153 (403)
T COG1221 78 DDLIGESPSLQELREQIKA----YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGH 153 (403)
T ss_pred hhhhccCHHHHHHHHHHHh----hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhcc
Confidence 3577777777777776654 12566789999999999999999998554 45899999998644 4557777
Q ss_pred ccc-cccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecC
Q 004834 286 RRT-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATAN 364 (728)
Q Consensus 286 ~~~-yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN 364 (728)
.++ |.|...++ ...|..+ ..+.+|||||..+.+.. +..|+.+||++...+...+. .+++ +|.+|++||
T Consensus 154 ~kGaftGa~~~k-~Glfe~A--~GGtLfLDEI~~LP~~~----Q~kLl~~le~g~~~rvG~~~-~~~~---dVRli~AT~ 222 (403)
T COG1221 154 EKGAFTGAQGGK-AGLFEQA--NGGTLFLDEIHRLPPEG----QEKLLRVLEEGEYRRVGGSQ-PRPV---DVRLICATT 222 (403)
T ss_pred ccceeecccCCc-Cchheec--CCCEEehhhhhhCCHhH----HHHHHHHHHcCceEecCCCC-CcCC---Cceeeeccc
Confidence 644 45533222 2334433 35699999999999987 99999999987766555422 3333 445777665
Q ss_pred CC--CCCCh--hhhCCee--EEEcCCCCH--HHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHH
Q 004834 365 RA--QPIPP--PLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 436 (728)
Q Consensus 365 ~~--~~l~~--~Ll~R~~--vI~~~~~t~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L 436 (728)
.. +.+-. .|.+|.. +|.+|++.+ +++...+.. +......+.+... ...+++++..+.. |.+..++|+|
T Consensus 223 ~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~-Fl~~~~~~l~~~~--~~~~~~a~~~L~~-y~~pGNirEL 298 (403)
T COG1221 223 EDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEH-FLKSEARRLGLPL--SVDSPEALRALLA-YDWPGNIREL 298 (403)
T ss_pred cCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHH-HHHHHHHHcCCCC--CCCCHHHHHHHHh-CCCCCcHHHH
Confidence 43 34444 6777553 688888876 334444444 4455555555542 3344678877754 8888999999
Q ss_pred HHHHHHHHH
Q 004834 437 ERNLAALAR 445 (728)
Q Consensus 437 ~~~I~~l~r 445 (728)
++.++.+|-
T Consensus 299 kN~Ve~~~~ 307 (403)
T COG1221 299 KNLVERAVA 307 (403)
T ss_pred HHHHHHHHH
Confidence 999999994
No 176
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.32 E-value=2.6e-11 Score=139.12 Aligned_cols=212 Identities=17% Similarity=0.293 Sum_probs=142.1
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCccc---hhhhccCcc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKD---EADIRGHRR 287 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~~---~s~l~g~~~ 287 (728)
+++|.....+++.+.+.... .....++|+|++||||+++|+++..... .+|+.++|....+ .+++.|+.+
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A----~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~ 280 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLA----MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAP 280 (520)
T ss_pred ceeECCHHHHHHHHHHHHHh----CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCC
Confidence 68888887777776664332 1234589999999999999999987663 5899999998654 345666543
Q ss_pred c-cccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC
Q 004834 288 T-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA 366 (728)
Q Consensus 288 ~-yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~ 366 (728)
+ |.|+..+. ...|..+ .++.+|||||+.+++.. +..|+++++.++....... ...++ ++.+|+||+..
T Consensus 281 ~~~~~~~~~~-~g~~e~a--~~GtL~LdeI~~L~~~~----Q~~Ll~~l~~~~~~~~g~~-~~~~~---~vRiI~st~~~ 349 (520)
T PRK10820 281 GAYPNALEGK-KGFFEQA--NGGSVLLDEIGEMSPRM----QAKLLRFLNDGTFRRVGED-HEVHV---DVRVICATQKN 349 (520)
T ss_pred CCcCCcccCC-CChhhhc--CCCEEEEeChhhCCHHH----HHHHHHHHhcCCcccCCCC-cceee---eeEEEEecCCC
Confidence 2 22322211 1123222 35799999999999877 8999999986543222211 12222 34577777654
Q ss_pred -------CCCChhhhCCee--EEEcCCCCH--HHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHH
Q 004834 367 -------QPIPPPLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 435 (728)
Q Consensus 367 -------~~l~~~Ll~R~~--vI~~~~~t~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~ 435 (728)
..|.+.|..|+. .|.+|++.. +++..++..+ ..+...++|.. ...++++++..|.. |.+..++|+
T Consensus 350 l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~f-l~~~~~~~g~~--~~~ls~~a~~~L~~-y~WPGNvre 425 (520)
T PRK10820 350 LVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELF-VARFADEQGVP--RPKLAADLNTVLTR-YGWPGNVRQ 425 (520)
T ss_pred HHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHH-HHHHHHHcCCC--CCCcCHHHHHHHhc-CCCCCHHHH
Confidence 358888999985 477888766 3444455444 44455555542 35799999998865 778889999
Q ss_pred HHHHHHHHH
Q 004834 436 LERNLAALA 444 (728)
Q Consensus 436 L~~~I~~l~ 444 (728)
|++.|.+.+
T Consensus 426 L~nvl~~a~ 434 (520)
T PRK10820 426 LKNAIYRAL 434 (520)
T ss_pred HHHHHHHHH
Confidence 998887776
No 177
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.32 E-value=2.2e-11 Score=121.42 Aligned_cols=156 Identities=23% Similarity=0.350 Sum_probs=100.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCC--eEEEecCCccchhhhc-cCcccc-----ccC-C-cchH---HHHHhhcC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRK--FIRISLGGVKDEADIR-GHRRTY-----IGS-M-PGRL---IDGLKRVG 305 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~--~~~i~~~~~~~~s~l~-g~~~~y-----vG~-~-~g~l---~~~~~~a~ 305 (728)
-++.+||+||||+|||++|+.+++.+... .....++.-.+...+. +..+.+ .+. . -..+ .+.+...+
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 34579999999999999999999998432 0000010000000000 000000 000 0 0123 33333333
Q ss_pred CC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcC
Q 004834 306 VC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELP 383 (728)
Q Consensus 306 ~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~ 383 (728)
.. ..|++|||+|++..+. ++.|+..|+.. ..+++||+++|....+.+++.+|+.++.|.
T Consensus 93 ~~~~~kviiide~~~l~~~~----~~~Ll~~le~~---------------~~~~~~il~~~~~~~l~~~i~sr~~~~~~~ 153 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNEAA----ANALLKTLEEP---------------PPNTLFILITPSPEKLLPTIRSRCQVLPFP 153 (188)
T ss_pred ccCCeEEEEEechhhhCHHH----HHHHHHHhcCC---------------CCCeEEEEEECChHhChHHHHhhcEEeeCC
Confidence 22 2399999999998765 88999999742 134567777777789999999999999999
Q ss_pred CCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHccc
Q 004834 384 GYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 429 (728)
Q Consensus 384 ~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~ 429 (728)
+|+.++...++..+ | ++++++..++..+.+
T Consensus 154 ~~~~~~~~~~l~~~---------g-------i~~~~~~~i~~~~~g 183 (188)
T TIGR00678 154 PLSEEALLQWLIRQ---------G-------ISEEAAELLLALAGG 183 (188)
T ss_pred CCCHHHHHHHHHHc---------C-------CCHHHHHHHHHHcCC
Confidence 99999988877664 2 578888888886654
No 178
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.31 E-value=2.3e-12 Score=127.95 Aligned_cols=155 Identities=28% Similarity=0.386 Sum_probs=75.3
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE--EEecCCccchhh------hcc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI--RISLGGVKDEAD------IRG 284 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~--~i~~~~~~~~s~------l~g 284 (728)
.+|+||+.+|+.+.-+.+ .+.+++|+||||||||++|+.+...|..-.. .+..+...+.+. +..
T Consensus 3 ~dI~GQe~aKrAL~iAAa--------G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~ 74 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA--------GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIR 74 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH--------CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE
T ss_pred hhhcCcHHHHHHHHHHHc--------CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceec
Confidence 479999999999887765 2468999999999999999999998842111 111111111111 111
Q ss_pred Ccc-----------ccccC----CcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCC
Q 004834 285 HRR-----------TYIGS----MPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLN 349 (728)
Q Consensus 285 ~~~-----------~yvG~----~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~ 349 (728)
.++ ..+|. .+|.+. ...++|+|+||+..+.+.. .++|++.|+.++...... +
T Consensus 75 ~~Pfr~phhs~s~~~liGgg~~~~PGeis------lAh~GVLflDE~~ef~~~v----ld~Lr~ple~g~v~i~R~---~ 141 (206)
T PF01078_consen 75 QRPFRAPHHSASEAALIGGGRPPRPGEIS------LAHRGVLFLDELNEFDRSV----LDALRQPLEDGEVTISRA---G 141 (206)
T ss_dssp ---EEEE-TT--HHHHHEEGGGEEE-CGG------GGTTSEEEECETTTS-HHH----HHHHHHHHHHSBEEEEET---T
T ss_pred CCCcccCCCCcCHHHHhCCCcCCCcCHHH------HhcCCEEEechhhhcCHHH----HHHHHHHHHCCeEEEEEC---C
Confidence 110 01111 112221 1245799999999998776 899999999776543322 2
Q ss_pred eee-cCCCcEEEEecCCC-----------------------CCCChhhhCCee-EEEcCCCCHH
Q 004834 350 VPF-DLSKVIFVATANRA-----------------------QPIPPPLLDRME-VIELPGYTPE 388 (728)
Q Consensus 350 ~~~-d~~~vi~I~TtN~~-----------------------~~l~~~Ll~R~~-vI~~~~~t~e 388 (728)
..+ -..++++|+|+|.- ..+..+|+|||| .+.++..+.+
T Consensus 142 ~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 142 GSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYE 205 (206)
T ss_dssp EEEEEB--EEEEEEE-S-----------------------------------------------
T ss_pred ceEEEecccEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 222 23467899999984 278999999999 5888877654
No 179
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.30 E-value=3.6e-11 Score=140.95 Aligned_cols=195 Identities=19% Similarity=0.319 Sum_probs=119.9
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC----------------------------
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---------------------------- 265 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~---------------------------- 265 (728)
.++||+.++..+.-.+.. +...++||.||||||||++|++++..+.
T Consensus 5 ~ivGq~~~~~al~~~av~------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~ 78 (633)
T TIGR02442 5 AIVGQEDLKLALLLNAVD------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKY 78 (633)
T ss_pred hhcChHHHHHHHHHHhhC------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcc
Confidence 689999988776554432 2234699999999999999999999982
Q ss_pred -------CCeEEEecCCccchhhhccCc-------cccccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHH
Q 004834 266 -------RKFIRISLGGVKDEADIRGHR-------RTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASAL 331 (728)
Q Consensus 266 -------~~~~~i~~~~~~~~s~l~g~~-------~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~L 331 (728)
.+|+.+.++. +...+.|.- .+.....+|.+. ...++|+|||||+.+.+.. ++.|
T Consensus 79 ~~~~~~~~pfv~~p~~~--t~~~l~G~~d~~~~l~~g~~~~~~G~L~------~A~~GiL~lDEi~~l~~~~----q~~L 146 (633)
T TIGR02442 79 RPSEQRPVPFVNLPLGA--TEDRVVGSLDIERALREGEKAFQPGLLA------EAHRGILYIDEVNLLDDHL----VDVL 146 (633)
T ss_pred cccccCCCCeeeCCCCC--cHHHcCCcccHHHHhhcCCeeecCccee------ecCCCeEEeChhhhCCHHH----HHHH
Confidence 2344433322 122222221 000000111111 1235699999999999887 9999
Q ss_pred HHhcCcccccccccCCCCeeecCCCcEEEEecCCCC-CCChhhhCCee-EEEcCCCC-HHHHHHHHHHhhc---------
Q 004834 332 LEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-PIPPPLLDRME-VIELPGYT-PEEKLRIAMRHLI--------- 399 (728)
Q Consensus 332 l~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~-~l~~~Ll~R~~-vI~~~~~t-~ee~~~Il~~~l~--------- 399 (728)
++.|+.+......+.. .... ..++.+|+|+|..+ .++++|++||. .|.++.+. .+++.+++++.+.
T Consensus 147 l~~le~g~~~v~r~g~-~~~~-~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~ 224 (633)
T TIGR02442 147 LDAAAMGVNRVEREGL-SVSH-PARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFA 224 (633)
T ss_pred HHHHhcCCEEEEECCc-eeee-cCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHH
Confidence 9999865422111111 1112 14578999999753 68999999997 47777765 4677777765321
Q ss_pred -----------hHHHhhcCCCccccccCHHHHHHHHHHccc
Q 004834 400 -----------PRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 429 (728)
Q Consensus 400 -----------~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~ 429 (728)
....... .....+.+++++++++++.|..
T Consensus 225 ~~~~~~~~~l~~~i~~ar-~~~~~V~is~~~~~~l~~~~~~ 264 (633)
T TIGR02442 225 ARWAAEQEELRNRIARAR-SLLPSVRISDSLIRFISELCIE 264 (633)
T ss_pred HHhhhhHHHHHHHHHHHH-HhCCCCCCCHHHHHHHHHHHHH
Confidence 0000001 1123578899999999886543
No 180
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.29 E-value=5.9e-11 Score=141.03 Aligned_cols=212 Identities=18% Similarity=0.327 Sum_probs=143.8
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccc---hhhhccCcc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKD---EADIRGHRR 287 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~---~s~l~g~~~ 287 (728)
+++|.....+.+.+.+.... .....++++|+||||||++|++|.... +.+|+.++|....+ .+++.|+..
T Consensus 377 ~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~ 452 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHER 452 (686)
T ss_pred ceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCccc
Confidence 58898888888877665432 234579999999999999999999876 46899999987643 345667654
Q ss_pred c-cccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC
Q 004834 288 T-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA 366 (728)
Q Consensus 288 ~-yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~ 366 (728)
+ +.|...... ..+..+ .++++|||||+.++.+. +..|+.+|+.......... .+. ..++-+|+|||..
T Consensus 453 ~~~~g~~~~~~-g~le~a--~~GtL~Ldei~~L~~~~----Q~~L~~~l~~~~~~~~g~~---~~~-~~~~RiI~~t~~~ 521 (686)
T PRK15429 453 GAFTGASAQRI-GRFELA--DKSSLFLDEVGDMPLEL----QPKLLRVLQEQEFERLGSN---KII-QTDVRLIAATNRD 521 (686)
T ss_pred ccccccccchh-hHHHhc--CCCeEEEechhhCCHHH----HHHHHHHHHhCCEEeCCCC---Ccc-cceEEEEEeCCCC
Confidence 3 223222111 223322 35799999999999887 8999999986432222111 111 2345688888764
Q ss_pred -------CCCChhhhCCee--EEEcCCCCH--HHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHH
Q 004834 367 -------QPIPPPLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 435 (728)
Q Consensus 367 -------~~l~~~Ll~R~~--vI~~~~~t~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~ 435 (728)
..|.+.|..|+. .|.+|++.. +++-.+++.++ .+...+++.. ...++++++..|.. |.+..++|+
T Consensus 522 l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l-~~~~~~~~~~--~~~~s~~al~~L~~-y~WPGNvrE 597 (686)
T PRK15429 522 LKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFT-FKIARRMGRN--IDSIPAETLRTLSN-MEWPGNVRE 597 (686)
T ss_pred HHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHH-HHHHHHcCCC--CCCcCHHHHHHHHh-CCCCCcHHH
Confidence 367888888986 477777755 44444555554 3444444432 23589999998854 888899999
Q ss_pred HHHHHHHHH
Q 004834 436 LERNLAALA 444 (728)
Q Consensus 436 L~~~I~~l~ 444 (728)
|++.|++.+
T Consensus 598 L~~~i~~a~ 606 (686)
T PRK15429 598 LENVIERAV 606 (686)
T ss_pred HHHHHHHHH
Confidence 999888877
No 181
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=2e-11 Score=130.91 Aligned_cols=160 Identities=18% Similarity=0.261 Sum_probs=109.9
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCe-------EEEecCCccchhhh---
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKF-------IRISLGGVKDEADI--- 282 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~-------~~i~~~~~~~~s~l--- 282 (728)
++++||+.+++.+...+.... -++.+||+||+|+||+++|+++|+.+...- .++.-....|...+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 478999999999999886443 356899999999999999999999984321 01000000000000
Q ss_pred ---ccCc--c---cccc-------CC----cchHHHHHhhcCCCC--cEEEEecccccCCCCCCCHHHHHHHhcCccccc
Q 004834 283 ---RGHR--R---TYIG-------SM----PGRLIDGLKRVGVCN--PVMLLDEIDKTGSDVRGDPASALLEVLDPEQNK 341 (728)
Q Consensus 283 ---~g~~--~---~yvG-------~~----~g~l~~~~~~a~~~~--~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~ 341 (728)
.|.. . ...| .. -..+.+.+...+... .|++||++|++.... +|+||..|++-
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~a----aNaLLK~LEEP--- 151 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAA----ANALLKTLEEP--- 151 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHH----HHHHHHHHhCC---
Confidence 0100 0 0000 00 012333344444332 399999999998765 89999999852
Q ss_pred ccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHh
Q 004834 342 TFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRH 397 (728)
Q Consensus 342 ~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~ 397 (728)
.+++||++|+.++.+.|.+++||..+.|++++.++..+++...
T Consensus 152 -------------p~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~ 194 (314)
T PRK07399 152 -------------GNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRL 194 (314)
T ss_pred -------------CCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHh
Confidence 2457888888999999999999999999999999999888875
No 182
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=3.2e-11 Score=130.05 Aligned_cols=156 Identities=17% Similarity=0.191 Sum_probs=106.5
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccC
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGS 292 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~ 292 (728)
.+++|++.+++.+...+... .-++.++|+||+|+|||++|+.+|+.+.+.... +...|...+.......+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~---~~h~D~~~~~~~~~~~i-- 73 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQ---REYVDIIEFKPINKKSI-- 73 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCC---CCCCCeEEeccccCCCC--
Confidence 36889999999998887532 234578999999999999999999987432110 00001101100000001
Q ss_pred CcchHHHHHh---hcCCCC--cEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC
Q 004834 293 MPGRLIDGLK---RVGVCN--PVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ 367 (728)
Q Consensus 293 ~~g~l~~~~~---~a~~~~--~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~ 367 (728)
.-..+.+... ..+... .|++||++|++.... +|+|+..|++- ..+++||.+|+.++
T Consensus 74 ~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a----~naLLK~LEep---------------p~~t~~il~~~~~~ 134 (313)
T PRK05564 74 GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQA----QNAFLKTIEEP---------------PKGVFIILLCENLE 134 (313)
T ss_pred CHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHH----HHHHHHHhcCC---------------CCCeEEEEEeCChH
Confidence 1123444333 333322 299999999998765 89999999852 24567888778889
Q ss_pred CCChhhhCCeeEEEcCCCCHHHHHHHHHHh
Q 004834 368 PIPPPLLDRMEVIELPGYTPEEKLRIAMRH 397 (728)
Q Consensus 368 ~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~ 397 (728)
.+.|.+++||.++.|++++.++....+...
T Consensus 135 ~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 135 QILDTIKSRCQIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred hCcHHHHhhceeeeCCCcCHHHHHHHHHHH
Confidence 999999999999999999999987777654
No 183
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.28 E-value=3.7e-11 Score=141.80 Aligned_cols=210 Identities=18% Similarity=0.227 Sum_probs=142.3
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCccc---hhhhccCc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKD---EADIRGHR 286 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~~---~s~l~g~~ 286 (728)
.+++|.+...+++.+.+.... .....++|+|+|||||+++|++|..... .+|+.++|+.... .+++.|+.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~ 400 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAA----KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSD 400 (638)
T ss_pred cceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCC
Confidence 457788887777777665433 2334589999999999999999998764 6999999998643 35566643
Q ss_pred cccccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC
Q 004834 287 RTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA 366 (728)
Q Consensus 287 ~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~ 366 (728)
. |...+.....+..+ .++.||||||+.++... +..|+++|+......... ...+++| +.+|+|||..
T Consensus 401 ~---~~~~~~~~g~~~~a--~~GtL~ldei~~l~~~~----Q~~Ll~~l~~~~~~~~~~-~~~~~~~---~riI~~t~~~ 467 (638)
T PRK11388 401 R---TDSENGRLSKFELA--HGGTLFLEKVEYLSPEL----QSALLQVLKTGVITRLDS-RRLIPVD---VRVIATTTAD 467 (638)
T ss_pred C---cCccCCCCCceeEC--CCCEEEEcChhhCCHHH----HHHHHHHHhcCcEEeCCC-CceEEee---EEEEEeccCC
Confidence 1 11111111122222 35799999999999887 899999997643322111 1122333 4588888864
Q ss_pred -------CCCChhhhCCee--EEEcCCCCH--HHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHH
Q 004834 367 -------QPIPPPLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 435 (728)
Q Consensus 367 -------~~l~~~Ll~R~~--vI~~~~~t~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~ 435 (728)
..|.+.|..|+. .|.+|++.. +++..++..++. +....++. .+.++++++..|.+ |.+..++|+
T Consensus 468 l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~-~~~~~~~~---~~~~s~~a~~~L~~-y~WPGNvre 542 (638)
T PRK11388 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLR-SLEKRFST---RLKIDDDALARLVS-YRWPGNDFE 542 (638)
T ss_pred HHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHH-HHHHHhCC---CCCcCHHHHHHHHc-CCCCChHHH
Confidence 478888999996 477777765 345556666553 33334332 25799999998865 888899999
Q ss_pred HHHHHHHHH
Q 004834 436 LERNLAALA 444 (728)
Q Consensus 436 L~~~I~~l~ 444 (728)
|++.|+..+
T Consensus 543 L~~~l~~~~ 551 (638)
T PRK11388 543 LRSVIENLA 551 (638)
T ss_pred HHHHHHHHH
Confidence 999888766
No 184
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=3.8e-11 Score=130.56 Aligned_cols=179 Identities=18% Similarity=0.227 Sum_probs=117.4
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCC----eEEEecC---Cccchhhhc--c
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK----FIRISLG---GVKDEADIR--G 284 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~----~~~i~~~---~~~~~s~l~--g 284 (728)
+++|++++++.+..++.... -++.+||+||+|+|||++|+.+|+.+... .....+. +........ |
T Consensus 24 ~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~ 98 (351)
T PRK09112 24 RLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQG 98 (351)
T ss_pred hccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcC
Confidence 58999999999999876332 23359999999999999999999998541 1111100 011110110 1
Q ss_pred -Ccccc-cc----CC---------cch---HHHHHhhcCC--CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccc
Q 004834 285 -HRRTY-IG----SM---------PGR---LIDGLKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFN 344 (728)
Q Consensus 285 -~~~~y-vG----~~---------~g~---l~~~~~~a~~--~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~ 344 (728)
|+.-+ +. .. -.. +.+.+...+. ...|++|||+|.+.... +|+||..|++.
T Consensus 99 ~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~a----anaLLk~LEEp------ 168 (351)
T PRK09112 99 AHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNA----ANAILKTLEEP------ 168 (351)
T ss_pred CCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHH----HHHHHHHHhcC------
Confidence 11100 10 00 011 2223333222 22399999999998766 89999999742
Q ss_pred cCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHH
Q 004834 345 DHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVI 424 (728)
Q Consensus 345 d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~ 424 (728)
..+++||..++.++.+.|.+++||..+.|++|+.++..+++... +.. ..++++++..++
T Consensus 169 ---------p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~---------~~~---~~~~~~~~~~i~ 227 (351)
T PRK09112 169 ---------PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHL---------GSS---QGSDGEITEALL 227 (351)
T ss_pred ---------CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHh---------hcc---cCCCHHHHHHHH
Confidence 23557778788888999999999999999999999999888763 111 126788888777
Q ss_pred HHcc
Q 004834 425 QRYT 428 (728)
Q Consensus 425 ~~~~ 428 (728)
+...
T Consensus 228 ~~s~ 231 (351)
T PRK09112 228 QRSK 231 (351)
T ss_pred HHcC
Confidence 6443
No 185
>PRK08727 hypothetical protein; Validated
Probab=99.28 E-value=4.5e-11 Score=123.30 Aligned_cols=162 Identities=22% Similarity=0.277 Sum_probs=105.1
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecccccC
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTG 320 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~ 320 (728)
..++|+||||||||+|+.+++..+.....++.+-... +. ...+.+.+.... ...+++|||++.+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~---~~-----------~~~~~~~~~~l~-~~dlLiIDDi~~l~ 106 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ---AA-----------AGRLRDALEALE-GRSLVALDGLESIA 106 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH---Hh-----------hhhHHHHHHHHh-cCCEEEEeCccccc
Confidence 4599999999999999999998874332222211111 10 112223333222 23599999999887
Q ss_pred CCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecC-CCC---CCChhhhCCe---eEEEcCCCCHHHHHHH
Q 004834 321 SDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATAN-RAQ---PIPPPLLDRM---EVIELPGYTPEEKLRI 393 (728)
Q Consensus 321 ~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN-~~~---~l~~~Ll~R~---~vI~~~~~t~ee~~~I 393 (728)
.+.. ....++.+++.... .+.-+|+|+| .+. .+.+.|.+|| .++.+++|+.+++.+|
T Consensus 107 ~~~~--~~~~lf~l~n~~~~--------------~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~i 170 (233)
T PRK08727 107 GQRE--DEVALFDFHNRARA--------------AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAV 170 (233)
T ss_pred CChH--HHHHHHHHHHHHHH--------------cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHH
Confidence 5431 24567777653221 1223555555 444 3579999996 4799999999999999
Q ss_pred HHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHH
Q 004834 394 AMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALAR 445 (728)
Q Consensus 394 l~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r 445 (728)
++++... .++.++++++.+|++++.+ .+|.+...++.+.+
T Consensus 171 L~~~a~~----------~~l~l~~e~~~~La~~~~r--d~r~~l~~L~~l~~ 210 (233)
T PRK08727 171 LRERAQR----------RGLALDEAAIDWLLTHGER--ELAGLVALLDRLDR 210 (233)
T ss_pred HHHHHHH----------cCCCCCHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Confidence 9986321 1478999999999998763 45566666666654
No 186
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=99.26 E-value=6.9e-12 Score=128.71 Aligned_cols=110 Identities=22% Similarity=0.394 Sum_probs=94.2
Q ss_pred CCCCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCC--CCeEEEeeeCCCceeeecCCHHHHHHHHHHcCCCee
Q 004834 602 NLLQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVR--ADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRV 679 (728)
Q Consensus 602 ~~~~~~di~i~~~~g~~~kdGpsaglaia~allSa~~~~~v~--~~~a~tGEi~L~G~V~~Vggi~~ki~~A~~~G~~~v 679 (728)
..+.+-+|.+|. -..+||||||.+++++++-++.-.+. ..+|-||.|.-+|+|.|||||..|+.||.++|.+-|
T Consensus 218 ~v~~~~~V~~~~----~~IGGPSAGLMFSL~Iy~qlt~~DL~~g~~IAGTGTI~~DG~VG~IGGI~qKvvAA~~AGA~vF 293 (342)
T COG3480 218 EVWAPPDVDFNT----ENIGGPSAGLMFSLAIYDQLTKGDLTGGRFIAGTGTIEVDGKVGPIGGIDQKVVAAAKAGADVF 293 (342)
T ss_pred ccccCCceEeec----ccCCCCchhheeeHHHHhhcccccccCceEEecceeeccCCcccCcccHhHHhHHHHhcCCcEE
Confidence 345566777777 34779999999999999999988886 578999999999999999999999999999999999
Q ss_pred eccccCccccc---------cchHhhhCCcEEEEeCCHHHHHHHH
Q 004834 680 ILPERNLKDLV---------EVPAAVLASLEIILAKRMEDVLEQA 715 (728)
Q Consensus 680 iiP~~n~~d~~---------~ip~~~~~~i~i~~v~~~~e~~~~~ 715 (728)
++|.+|+.+-. .--+++...|+++||.++.|+++++
T Consensus 294 f~P~~~~~e~~s~sny~~a~~~ak~l~t~mkivpv~T~q~aldyl 338 (342)
T COG3480 294 FVPADNCAEEMSDSNYDEALVAAEDLSTAMKIVPVKTLQEALDYL 338 (342)
T ss_pred EecCCccchhhccCCHHHHHHHHHhhcccceEEeechhhhhhhHh
Confidence 99998776551 1224567799999999999999985
No 187
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.25 E-value=2.8e-11 Score=130.63 Aligned_cols=143 Identities=25% Similarity=0.346 Sum_probs=98.8
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCE-EEEEcCCCCChhHHHHHHHHHhCC------------------------Ce
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPV-LCFVGPPGVGKTSLASSIASALGR------------------------KF 268 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~-lLL~GPpGtGKT~LakalA~~l~~------------------------~~ 268 (728)
+++|.+.+...+..+.... ...++ +||+||||+|||++|.++|+.+.. .+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~-----~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 76 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES-----GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDF 76 (325)
T ss_pred CcccchhHHHHHHHHHHhc-----CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCce
Confidence 4677777777777766532 24455 999999999999999999999962 33
Q ss_pred EEEecCCccchhhhccCccccccCCcchHHHHHh---hcC--CCCcEEEEecccccCCCCCCCHHHHHHHhcCccccccc
Q 004834 269 IRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLK---RVG--VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTF 343 (728)
Q Consensus 269 ~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~---~a~--~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~ 343 (728)
+.++-++... ..-....+.+... ..+ ...-|++|||+|.+..+. +++|+..++..
T Consensus 77 lel~~s~~~~-----------~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A----~nallk~lEep----- 136 (325)
T COG0470 77 LELNPSDLRK-----------IDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDA----ANALLKTLEEP----- 136 (325)
T ss_pred EEecccccCC-----------CcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHH----HHHHHHHhccC-----
Confidence 3333322111 0001112222222 222 112399999999999866 99999999853
Q ss_pred ccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHH
Q 004834 344 NDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKL 391 (728)
Q Consensus 344 ~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~ 391 (728)
..++.||++||.+..+.+++++||..+.|++++.....
T Consensus 137 ----------~~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~~~~i 174 (325)
T COG0470 137 ----------PKNTRFILITNDPSKILPTIRSRCQRIRFKPPSRLEAI 174 (325)
T ss_pred ----------CCCeEEEEEcCChhhccchhhhcceeeecCCchHHHHH
Confidence 34678999999999999999999999999985544433
No 188
>PRK05642 DNA replication initiation factor; Validated
Probab=99.24 E-value=4e-11 Score=123.74 Aligned_cols=160 Identities=20% Similarity=0.342 Sum_probs=106.9
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEeccc
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEID 317 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEid 317 (728)
..++|+||+|||||+|++++++.+. .....++... +.. . ...+.+.++. ..+++||+++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~------~~~-------~-~~~~~~~~~~----~d~LiiDDi~ 107 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE------LLD-------R-GPELLDNLEQ----YELVCLDDLD 107 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH------HHh-------h-hHHHHHhhhh----CCEEEEechh
Confidence 5688999999999999999998763 2333333222 110 0 0122333332 3599999999
Q ss_pred ccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC---CCChhhhCCe---eEEEcCCCCHHHHH
Q 004834 318 KTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ---PIPPPLLDRM---EVIELPGYTPEEKL 391 (728)
Q Consensus 318 kl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~---~l~~~Ll~R~---~vI~~~~~t~ee~~ 391 (728)
.+..+. +....|+.+++.... ....++++++..+. .+.|.|.+|| .++.+.+|+.+++.
T Consensus 108 ~~~~~~--~~~~~Lf~l~n~~~~-------------~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~ 172 (234)
T PRK05642 108 VIAGKA--DWEEALFHLFNRLRD-------------SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKL 172 (234)
T ss_pred hhcCCh--HHHHHHHHHHHHHHh-------------cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHH
Confidence 886542 225678888864221 11224444443343 3479999999 57999999999999
Q ss_pred HHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHH
Q 004834 392 RIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALAR 445 (728)
Q Consensus 392 ~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r 445 (728)
.+++... ... ++.++++++++|++++.+ .+|.+...++.+-+
T Consensus 173 ~il~~ka-----~~~-----~~~l~~ev~~~L~~~~~~--d~r~l~~~l~~l~~ 214 (234)
T PRK05642 173 RALQLRA-----SRR-----GLHLTDEVGHFILTRGTR--SMSALFDLLERLDQ 214 (234)
T ss_pred HHHHHHH-----HHc-----CCCCCHHHHHHHHHhcCC--CHHHHHHHHHHHHH
Confidence 9998653 112 378999999999998764 56788888887764
No 189
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.24 E-value=1.6e-11 Score=137.96 Aligned_cols=172 Identities=19% Similarity=0.257 Sum_probs=108.9
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCC-----CeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEec
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGR-----KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 315 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~-----~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDE 315 (728)
..++|+||||||||+|++++|+.+.. ....++...+ ..++... +.......+.+.++ ....+++|||
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f--~~~~~~~---~~~~~~~~f~~~~~---~~~dvLlIDD 202 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF--LNDLVDS---MKEGKLNEFREKYR---KKVDVLLIDD 202 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HHHHHHH---HhcccHHHHHHHHH---hcCCEEEEec
Confidence 35999999999999999999998732 2333332221 1111100 00000011222221 1245999999
Q ss_pred ccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC---CCChhhhCCee---EEEcCCCCHHH
Q 004834 316 IDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ---PIPPPLLDRME---VIELPGYTPEE 389 (728)
Q Consensus 316 idkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~---~l~~~Ll~R~~---vI~~~~~t~ee 389 (728)
++.+..+. ..+..|+.+++.... ....+++++.+.+. .+.+.+.+||. ++.+.+|+.+.
T Consensus 203 i~~l~~~~--~~q~elf~~~n~l~~-------------~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~ 267 (440)
T PRK14088 203 VQFLIGKT--GVQTELFHTFNELHD-------------SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_pred hhhhcCcH--HHHHHHHHHHHHHHH-------------cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHH
Confidence 99885432 124567777653221 12234444434443 46788999996 79999999999
Q ss_pred HHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHHHH
Q 004834 390 KLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAA 447 (728)
Q Consensus 390 ~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~a 447 (728)
+..|+++... . .++.++++++.+|++++. ..+|.|+..+.++...+
T Consensus 268 r~~IL~~~~~-----~-----~~~~l~~ev~~~Ia~~~~--~~~R~L~g~l~~l~~~~ 313 (440)
T PRK14088 268 RKKIARKMLE-----I-----EHGELPEEVLNFVAENVD--DNLRRLRGAIIKLLVYK 313 (440)
T ss_pred HHHHHHHHHH-----h-----cCCCCCHHHHHHHHhccc--cCHHHHHHHHHHHHHHH
Confidence 9999988742 1 247799999999999775 46889999888887543
No 190
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=1.4e-10 Score=126.74 Aligned_cols=160 Identities=18% Similarity=0.274 Sum_probs=107.2
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE-----------EEecCCccchhh-
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI-----------RISLGGVKDEAD- 281 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~-----------~i~~~~~~~~s~- 281 (728)
+++|++.+++.+...+...+ -++.+||+||+|+||+++|.++|+.+-+.-. .+...+....-.
T Consensus 20 ~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~ 94 (365)
T PRK07471 20 ALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR 94 (365)
T ss_pred hccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHH
Confidence 68999999999998876433 2345999999999999999999999843210 000011100000
Q ss_pred h--ccCc------cccccC--------CcchHHHH---HhhcCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccc
Q 004834 282 I--RGHR------RTYIGS--------MPGRLIDG---LKRVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQN 340 (728)
Q Consensus 282 l--~g~~------~~yvG~--------~~g~l~~~---~~~a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~ 340 (728)
+ ..|+ +.+-+. .-..+.+. +...+.. ..|++|||+|.+.... +|+|+..+++.
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~a----anaLLK~LEep-- 168 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANA----ANALLKVLEEP-- 168 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHH----HHHHHHHHhcC--
Confidence 0 0111 000000 01222222 2222221 2299999999998766 89999999842
Q ss_pred cccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHh
Q 004834 341 KTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRH 397 (728)
Q Consensus 341 ~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~ 397 (728)
..+++||++|+.++.+.+.+++||..+.|++++.++..+++...
T Consensus 169 -------------p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 169 -------------PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA 212 (365)
T ss_pred -------------CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh
Confidence 23567888999999999999999999999999999999888765
No 191
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.23 E-value=3.3e-11 Score=122.96 Aligned_cols=170 Identities=21% Similarity=0.363 Sum_probs=103.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhC---C--CeEEEecCCccchhhhccCccccccCCc-chHHHHHhhcCCCCcEEEE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALG---R--KFIRISLGGVKDEADIRGHRRTYIGSMP-GRLIDGLKRVGVCNPVMLL 313 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~---~--~~~~i~~~~~~~~s~l~g~~~~yvG~~~-g~l~~~~~~a~~~~~Vlll 313 (728)
...+.++||+|+|||+|.+++++.+. . ....++...+.. . +..... +.+. .++..-....+++|
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~--~-------~~~~~~~~~~~-~~~~~~~~~DlL~i 103 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIR--E-------FADALRDGEIE-EFKDRLRSADLLII 103 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHH--H-------HHHHHHTTSHH-HHHHHHCTSSEEEE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHH--H-------HHHHHHcccch-hhhhhhhcCCEEEE
Confidence 34588999999999999999998863 2 223332222111 0 111000 1121 22221123469999
Q ss_pred ecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC---CCChhhhCCee---EEEcCCCCH
Q 004834 314 DEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ---PIPPPLLDRME---VIELPGYTP 387 (728)
Q Consensus 314 DEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~---~l~~~Ll~R~~---vI~~~~~t~ 387 (728)
|+++.+..+. ..+..|+.+++.... ..+.+++++...|. .+++.|.+||. ++.+.+|+.
T Consensus 104 DDi~~l~~~~--~~q~~lf~l~n~~~~-------------~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~ 168 (219)
T PF00308_consen 104 DDIQFLAGKQ--RTQEELFHLFNRLIE-------------SGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDD 168 (219)
T ss_dssp ETGGGGTTHH--HHHHHHHHHHHHHHH-------------TTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----H
T ss_pred ecchhhcCch--HHHHHHHHHHHHHHh-------------hCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCH
Confidence 9999987532 236788888874321 12234444434444 57889999994 699999999
Q ss_pred HHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHHH
Q 004834 388 EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARA 446 (728)
Q Consensus 388 ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~ 446 (728)
+.+.+|+++... .. ++.++++++++|++++.+ .+|.|+..|.++.-.
T Consensus 169 ~~r~~il~~~a~-----~~-----~~~l~~~v~~~l~~~~~~--~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 169 EDRRRILQKKAK-----ER-----GIELPEEVIEYLARRFRR--DVRELEGALNRLDAY 215 (219)
T ss_dssp HHHHHHHHHHHH-----HT-----T--S-HHHHHHHHHHTTS--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----Hh-----CCCCcHHHHHHHHHhhcC--CHHHHHHHHHHHHHH
Confidence 999999998742 33 367999999999998764 678898888888744
No 192
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.22 E-value=1.3e-10 Score=136.67 Aligned_cols=174 Identities=17% Similarity=0.185 Sum_probs=106.2
Q ss_pred HHHhhhccccchHHHHHHHHHHHHhhccC-------C--------CCCCCEEEEEcCCCCChhHHHHHHHHHhCC-----
Q 004834 207 AKERLDSDHYGLVRVKQRIIEYLAVRKLK-------P--------DARGPVLCFVGPPGVGKTSLASSIASALGR----- 266 (728)
Q Consensus 207 ~~~~L~~~i~G~~~vk~~i~~~l~~~~~~-------~--------~~~~~~lLL~GPpGtGKT~LakalA~~l~~----- 266 (728)
+...+...++|.+.+|+.|.-.+...... + -+...++||+|+||||||.+|+.+++...+
T Consensus 444 L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~yts 523 (915)
T PTZ00111 444 LLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTS 523 (915)
T ss_pred HHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCC
Confidence 44456678999999999987666432110 0 012238999999999999999999987643
Q ss_pred --CeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccc
Q 004834 267 --KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFN 344 (728)
Q Consensus 267 --~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~ 344 (728)
++..+.+++.. ...+...+-....+|. +.. ..+++++|||++++.+.. +.+|+++|+..+. .
T Consensus 524 G~~~s~vgLTa~~---~~~d~~tG~~~le~Ga----Lvl--AdgGtL~IDEidkms~~~----Q~aLlEaMEqqtI---s 587 (915)
T PTZ00111 524 GKSSSSVGLTASI---KFNESDNGRAMIQPGA----VVL--ANGGVCCIDELDKCHNES----RLSLYEVMEQQTV---T 587 (915)
T ss_pred CCCCccccccchh---hhcccccCcccccCCc----EEE--cCCCeEEecchhhCCHHH----HHHHHHHHhCCEE---E
Confidence 22333232210 0000000000001121 111 235699999999998776 8999999985431 1
Q ss_pred cCCCCeeecC-CCcEEEEecCCCC-------------CCChhhhCCeeE--EEcCCCCHHHHHHHHHH
Q 004834 345 DHYLNVPFDL-SKVIFVATANRAQ-------------PIPPPLLDRMEV--IELPGYTPEEKLRIAMR 396 (728)
Q Consensus 345 d~~~~~~~d~-~~vi~I~TtN~~~-------------~l~~~Ll~R~~v--I~~~~~t~ee~~~Il~~ 396 (728)
-...|....+ .++.+|+|+|+.. .++++|++||+. +.++.++.+.-..|+.+
T Consensus 588 I~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~h 655 (915)
T PTZ00111 588 IAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLS 655 (915)
T ss_pred EecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHH
Confidence 1112322222 3578999999953 689999999983 66777777655555443
No 193
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.22 E-value=1.6e-11 Score=119.36 Aligned_cols=144 Identities=24% Similarity=0.296 Sum_probs=88.0
Q ss_pred chHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEE-ecCC-----------ccchhhhcc
Q 004834 217 GLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRI-SLGG-----------VKDEADIRG 284 (728)
Q Consensus 217 G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i-~~~~-----------~~~~s~l~g 284 (728)
||+.+++.+...+.... -++.+||+||+|+||+++|+++|+.+-..-..- .++. ..|...+..
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 78888888888776433 345689999999999999999999984321110 1111 011110100
Q ss_pred Ccc-ccccCCcchHHHH---HhhcCCCC--cEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcE
Q 004834 285 HRR-TYIGSMPGRLIDG---LKRVGVCN--PVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 358 (728)
Q Consensus 285 ~~~-~yvG~~~g~l~~~---~~~a~~~~--~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi 358 (728)
... ..+ .-..+.+. +...+..+ -|++||++|++.... +|+||..|++- ..++.
T Consensus 76 ~~~~~~i--~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a----~NaLLK~LEep---------------p~~~~ 134 (162)
T PF13177_consen 76 DKKKKSI--KIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEA----QNALLKTLEEP---------------PENTY 134 (162)
T ss_dssp TTSSSSB--SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHH----HHHHHHHHHST---------------TTTEE
T ss_pred ccccchh--hHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHH----HHHHHHHhcCC---------------CCCEE
Confidence 000 001 11233333 22233332 299999999998877 99999999852 35679
Q ss_pred EEEecCCCCCCChhhhCCeeEEEcCCCC
Q 004834 359 FVATANRAQPIPPPLLDRMEVIELPGYT 386 (728)
Q Consensus 359 ~I~TtN~~~~l~~~Ll~R~~vI~~~~~t 386 (728)
||++|+.++.+.|.+++||..+.|++++
T Consensus 135 fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 135 FILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEEEECChHHChHHHHhhceEEecCCCC
Confidence 9999999999999999999999998764
No 194
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.22 E-value=7.6e-11 Score=136.72 Aligned_cols=186 Identities=21% Similarity=0.257 Sum_probs=119.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCC--CeEEEecCCccchhhhccCcc-------ccccCCcchHHHHHhhcCCCCcE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGR--KFIRISLGGVKDEADIRGHRR-------TYIGSMPGRLIDGLKRVGVCNPV 310 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~--~~~~i~~~~~~~~s~l~g~~~-------~yvG~~~g~l~~~~~~a~~~~~V 310 (728)
-.++||.|+||||||++|++++..++. +|+++.++. +...+.|.-. +..-..+|.+. ...+++
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~--t~d~L~G~idl~~~~~~g~~~~~~G~L~------~A~~Gv 87 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGV--TEDRLIGGIDVEESLAGGQRVTQPGLLD------EAPRGV 87 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCccc--chhhcccchhhhhhhhcCcccCCCCCee------eCCCCc
Confidence 568999999999999999999999865 588887532 2333333210 00001122221 123569
Q ss_pred EEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeec-CCCcEEEEecCCCC---CCChhhhCCeeE-EEcCC-
Q 004834 311 MLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD-LSKVIFVATANRAQ---PIPPPLLDRMEV-IELPG- 384 (728)
Q Consensus 311 lllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d-~~~vi~I~TtN~~~---~l~~~Ll~R~~v-I~~~~- 384 (728)
+|+|||+.+.+.. ++.|++.|+.++...-.+ |.... ..++.+|+|+|..+ .++++|++||.+ |.+..
T Consensus 88 L~lDEi~rl~~~~----q~~Ll~al~~g~v~i~r~---G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~ 160 (589)
T TIGR02031 88 LYVDMANLLDDGL----SNRLLQALDEGVVIVERE---GISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDV 160 (589)
T ss_pred EeccchhhCCHHH----HHHHHHHHHcCCeEEEEC---CCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCC
Confidence 9999999999887 999999998765321111 11111 23568889999875 899999999973 55544
Q ss_pred CCHHHHHHHHHHhhch-------------HHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHH
Q 004834 385 YTPEEKLRIAMRHLIP-------------RVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLA 441 (728)
Q Consensus 385 ~t~ee~~~Il~~~l~~-------------~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~ 441 (728)
++.+++.+|+++.+.. ..+....-....+.++++++.++++.+. ..|+..++..|.
T Consensus 161 ~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~-~~gv~s~Ra~i~ 229 (589)
T TIGR02031 161 ASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAA-SLGISGHRADLF 229 (589)
T ss_pred CCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHH-HcCCCCccHHHH
Confidence 4667788888776410 0011111113457899999999998654 355554555543
No 195
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.21 E-value=2.3e-11 Score=118.74 Aligned_cols=152 Identities=20% Similarity=0.330 Sum_probs=98.2
Q ss_pred ccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCccc---hhhhccCccc
Q 004834 215 HYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKD---EADIRGHRRT 288 (728)
Q Consensus 215 i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~~---~s~l~g~~~~ 288 (728)
++|.+...+++.+.+..... ....++++|++||||+.+|++|.+... .||+.++|+.+.. .+++.|+..+
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~ 76 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKG 76 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSS
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccc
Confidence 35666667777776654432 235688999999999999999999774 5899999998754 3567787643
Q ss_pred -cccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC-
Q 004834 289 -YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA- 366 (728)
Q Consensus 289 -yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~- 366 (728)
+.|...... ..+..+ .++.+|||||+.+++.. |..|+++|+..+.....+ ..++. .++.+|+|||..
T Consensus 77 ~~~~~~~~~~-G~l~~A--~~GtL~Ld~I~~L~~~~----Q~~Ll~~l~~~~~~~~g~---~~~~~-~~~RiI~st~~~l 145 (168)
T PF00158_consen 77 AFTGARSDKK-GLLEQA--NGGTLFLDEIEDLPPEL----QAKLLRVLEEGKFTRLGS---DKPVP-VDVRIIASTSKDL 145 (168)
T ss_dssp SSTTTSSEBE-HHHHHT--TTSEEEEETGGGS-HHH----HHHHHHHHHHSEEECCTS---SSEEE---EEEEEEESS-H
T ss_pred cccccccccC-Cceeec--cceEEeecchhhhHHHH----HHHHHHHHhhchhccccc---ccccc-ccceEEeecCcCH
Confidence 233322111 344444 35799999999999988 999999998754333222 22222 356788888865
Q ss_pred ------CCCChhhhCCeeEEE
Q 004834 367 ------QPIPPPLLDRMEVIE 381 (728)
Q Consensus 367 ------~~l~~~Ll~R~~vI~ 381 (728)
..|.+.|..|+.++.
T Consensus 146 ~~~v~~g~fr~dLy~rL~~~~ 166 (168)
T PF00158_consen 146 EELVEQGRFREDLYYRLNVFT 166 (168)
T ss_dssp HHHHHTTSS-HHHHHHHTTEE
T ss_pred HHHHHcCCChHHHHHHhceEe
Confidence 478888888876443
No 196
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.20 E-value=1.2e-10 Score=109.11 Aligned_cols=143 Identities=27% Similarity=0.374 Sum_probs=89.9
Q ss_pred chHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccchhhhccCccccccCC
Q 004834 217 GLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSM 293 (728)
Q Consensus 217 G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~~s~l~g~~~~yvG~~ 293 (728)
|++.....+..++.. ..+.+++++||||||||++++.+++.+ +.+++.+++............ .+..
T Consensus 2 ~~~~~~~~i~~~~~~------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~ 71 (151)
T cd00009 2 GQEEAIEALREALEL------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAEL----FGHF 71 (151)
T ss_pred chHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHH----hhhh
Confidence 556666666665532 245689999999999999999999998 777777777654332221110 0000
Q ss_pred cchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC--CCCh
Q 004834 294 PGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ--PIPP 371 (728)
Q Consensus 294 ~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~--~l~~ 371 (728)
. ..............++++||++.+.+.. ...+++.+....... ....++.+|+++|... .+++
T Consensus 72 ~-~~~~~~~~~~~~~~~lilDe~~~~~~~~----~~~~~~~i~~~~~~~---------~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 72 L-VRLLFELAEKAKPGVLFIDEIDSLSRGA----QNALLRVLETLNDLR---------IDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred h-HhHHHHhhccCCCeEEEEeChhhhhHHH----HHHHHHHHHhcCcee---------ccCCCeEEEEecCccccCCcCh
Confidence 0 0001111122234699999999984433 566777776422110 1234678888988877 7899
Q ss_pred hhhCCee-EEEcC
Q 004834 372 PLLDRME-VIELP 383 (728)
Q Consensus 372 ~Ll~R~~-vI~~~ 383 (728)
.+.+||. .+.++
T Consensus 138 ~~~~r~~~~i~~~ 150 (151)
T cd00009 138 ALYDRLDIRIVIP 150 (151)
T ss_pred hHHhhhccEeecC
Confidence 9999995 67665
No 197
>PRK06620 hypothetical protein; Validated
Probab=99.20 E-value=8.6e-11 Score=119.44 Aligned_cols=145 Identities=17% Similarity=0.282 Sum_probs=97.6
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecccccC
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTG 320 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~ 320 (728)
+.++|+||||||||+|++++++..+..+.. ... . . .+.++ ...+++||||+...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~----~~~-----------~---~----~~~~~----~~d~lliDdi~~~~ 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK----DIF-----------F---N----EEILE----KYNAFIIEDIENWQ 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc----hhh-----------h---c----hhHHh----cCCEEEEeccccch
Confidence 579999999999999999999876532211 000 0 0 01111 23599999999441
Q ss_pred CCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC--CCChhhhCCee---EEEcCCCCHHHHHHHHH
Q 004834 321 SDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ--PIPPPLLDRME---VIELPGYTPEEKLRIAM 395 (728)
Q Consensus 321 ~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~--~l~~~Ll~R~~---vI~~~~~t~ee~~~Il~ 395 (728)
...|+.+++... +..+.++|+++..+. .+ |+|++|+. ++.+.+|+.+.+..+++
T Consensus 99 -------~~~lf~l~N~~~-------------e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~ 157 (214)
T PRK06620 99 -------EPALLHIFNIIN-------------EKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIF 157 (214)
T ss_pred -------HHHHHHHHHHHH-------------hcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHH
Confidence 235555554211 112235555444443 36 89999997 89999999999998888
Q ss_pred HhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHH
Q 004834 396 RHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 396 ~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
+... .. ++.++++++++|++++.+ .+|.+...++.+-
T Consensus 158 k~~~-----~~-----~l~l~~ev~~~L~~~~~~--d~r~l~~~l~~l~ 194 (214)
T PRK06620 158 KHFS-----IS-----SVTISRQIIDFLLVNLPR--EYSKIIEILENIN 194 (214)
T ss_pred HHHH-----Hc-----CCCCCHHHHHHHHHHccC--CHHHHHHHHHHHH
Confidence 8742 12 378999999999998764 5678888887754
No 198
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=4.7e-11 Score=129.36 Aligned_cols=159 Identities=20% Similarity=0.227 Sum_probs=104.4
Q ss_pred cccc-hHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCe--EEEecCCccchhhhc-c-Ccc-
Q 004834 214 DHYG-LVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKF--IRISLGGVKDEADIR-G-HRR- 287 (728)
Q Consensus 214 ~i~G-~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~--~~i~~~~~~~~s~l~-g-~~~- 287 (728)
.++| |+.+++.+...+... .-++.+||+||+|+|||++|+.+|+.+..+- ..-.|+.-.+...+. | |+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~ 80 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV 80 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE
Confidence 4566 898999888877532 2345679999999999999999999984321 101111100000000 0 000
Q ss_pred ccc---cCCc--chHHHHH---hhcCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 288 TYI---GSMP--GRLIDGL---KRVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 288 ~yv---G~~~--g~l~~~~---~~a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
.++ |... ..+.+.. ...+.. ..|++|||+|++.... +|+||..|++- ..++
T Consensus 81 ~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a----~NaLLK~LEEP---------------p~~~ 141 (329)
T PRK08058 81 HLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASA----ANSLLKFLEEP---------------SGGT 141 (329)
T ss_pred EEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHH----HHHHHHHhcCC---------------CCCc
Confidence 001 1111 2333333 222222 2399999999998765 89999999852 2456
Q ss_pred EEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHH
Q 004834 358 IFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMR 396 (728)
Q Consensus 358 i~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~ 396 (728)
+||++|+.+..+.|.+++||.+++|++++.++..++++.
T Consensus 142 ~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 142 TAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred eEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 888899889999999999999999999999988766654
No 199
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=8.7e-11 Score=132.73 Aligned_cols=178 Identities=26% Similarity=0.399 Sum_probs=124.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCc-EEEEeccc
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEID 317 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEid 317 (728)
..+.+||+|+||||||++++++|..+|.+++.++|.+..+.+. +..+-.+...+.++....| |||+-.+|
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~---------~~~etkl~~~f~~a~~~~pavifl~~~d 500 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESA---------SHTETKLQAIFSRARRCSPAVLFLRNLD 500 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhccc---------chhHHHHHHHHHHHhhcCceEEEEeccc
Confidence 4568999999999999999999999999999999887654321 2233456677777765555 99999999
Q ss_pred ccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCee-EEEcCCCCHHHHHHHHHH
Q 004834 318 KTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMR 396 (728)
Q Consensus 318 kl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~ 396 (728)
-+..+..+...-.+++.+...- ..+ ..++++..++||+|++..+.+|+.+++-|. .|.++.+++++|.+|++.
T Consensus 501 vl~id~dgged~rl~~~i~~~l---s~e---~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~ 574 (953)
T KOG0736|consen 501 VLGIDQDGGEDARLLKVIRHLL---SNE---DFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQW 574 (953)
T ss_pred eeeecCCCchhHHHHHHHHHHH---hcc---cccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHH
Confidence 8876654433223333332100 001 224466788999999999999999999885 799999999999999999
Q ss_pred hhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHH
Q 004834 397 HLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAAL 443 (728)
Q Consensus 397 ~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l 443 (728)
++. +..+++++-..-...++.....++|+......
T Consensus 575 y~~------------~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~ 609 (953)
T KOG0736|consen 575 YLN------------HLPLNQDVNLKQLARKTSGFSFGDLEALVAHS 609 (953)
T ss_pred HHh------------ccccchHHHHHHHHHhcCCCCHHHHHHHhcCc
Confidence 853 23455444333333344445566666655555
No 200
>PRK09087 hypothetical protein; Validated
Probab=99.19 E-value=1.7e-10 Score=118.31 Aligned_cols=151 Identities=19% Similarity=0.290 Sum_probs=100.6
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecccc
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDK 318 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidk 318 (728)
..+.++|+||+|+|||+|++++++..+..++.. ... ...+...+. ..+++||+++.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~-----------------~~~~~~~~~-----~~~l~iDDi~~ 98 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEI-----------------GSDAANAAA-----EGPVLIEDIDA 98 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHc-----------------chHHHHhhh-----cCeEEEECCCC
Confidence 356699999999999999999997654332211 100 001111111 24899999998
Q ss_pred cCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecC-CCC---CCChhhhCCe---eEEEcCCCCHHHHH
Q 004834 319 TGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATAN-RAQ---PIPPPLLDRM---EVIELPGYTPEEKL 391 (728)
Q Consensus 319 l~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN-~~~---~l~~~Ll~R~---~vI~~~~~t~ee~~ 391 (728)
+..+ +..|+.+++.... ..+ .+|.|++ .+. ...+.|++|| .++.+.+|+.+++.
T Consensus 99 ~~~~-----~~~lf~l~n~~~~-------------~g~-~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~ 159 (226)
T PRK09087 99 GGFD-----ETGLFHLINSVRQ-------------AGT-SLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLS 159 (226)
T ss_pred CCCC-----HHHHHHHHHHHHh-------------CCC-eEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHH
Confidence 7422 5678887764321 122 3444444 333 3478899999 58999999999999
Q ss_pred HHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHH
Q 004834 392 RIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 392 ~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
+|+++++.. .++.++++++++|++++.+ .+|.+...+.++-
T Consensus 160 ~iL~~~~~~----------~~~~l~~ev~~~La~~~~r--~~~~l~~~l~~L~ 200 (226)
T PRK09087 160 QVIFKLFAD----------RQLYVDPHVVYYLVSRMER--SLFAAQTIVDRLD 200 (226)
T ss_pred HHHHHHHHH----------cCCCCCHHHHHHHHHHhhh--hHHHHHHHHHHHH
Confidence 999988531 2478999999999998874 4555655555554
No 201
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.19 E-value=2.4e-10 Score=129.26 Aligned_cols=212 Identities=17% Similarity=0.263 Sum_probs=136.3
Q ss_pred ccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCccc---hhhhccCccc
Q 004834 215 HYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKD---EADIRGHRRT 288 (728)
Q Consensus 215 i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~~---~s~l~g~~~~ 288 (728)
++|.....+.+...+.... .....+++.|++||||+++|+++..... .+|+.++|....+ .+.+.|+..+
T Consensus 141 lig~s~~~~~l~~~i~~~a----~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~ 216 (445)
T TIGR02915 141 LITSSPGMQKICRTIEKIA----PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKG 216 (445)
T ss_pred eeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCC
Confidence 4555555555555443211 2334688999999999999999998764 5899999998643 3455665433
Q ss_pred c-ccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC-
Q 004834 289 Y-IGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA- 366 (728)
Q Consensus 289 y-vG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~- 366 (728)
. .|... .....+..+ .++.+|||||+.+++.. +..|+++++.....+.... ...+. ++.+|+|||..
T Consensus 217 ~~~~~~~-~~~g~~~~a--~~gtl~l~~i~~l~~~~----q~~l~~~l~~~~~~~~~~~-~~~~~---~~rii~~~~~~l 285 (445)
T TIGR02915 217 AFTGAVK-QTLGKIEYA--HGGTLFLDEIGDLPLNL----QAKLLRFLQERVIERLGGR-EEIPV---DVRIVCATNQDL 285 (445)
T ss_pred CcCCCcc-CCCCceeEC--CCCEEEEechhhCCHHH----HHHHHHHHhhCeEEeCCCC-ceeee---ceEEEEecCCCH
Confidence 2 22211 001112222 35699999999999887 8999999986432221111 11222 45678888765
Q ss_pred ------CCCChhhhCCee--EEEcCCCCH--HHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHH
Q 004834 367 ------QPIPPPLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 436 (728)
Q Consensus 367 ------~~l~~~Ll~R~~--vI~~~~~t~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L 436 (728)
..|.+.|..|+. .|.+|++.. ++...++..++ .+....++ +....++++++..|.. |.+..++|+|
T Consensus 286 ~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l-~~~~~~~~--~~~~~~~~~a~~~L~~-~~wpgNvreL 361 (445)
T TIGR02915 286 KRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFL-ERFARELK--RKTKGFTDDALRALEA-HAWPGNVREL 361 (445)
T ss_pred HHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHH-HHHHHHhC--CCCCCCCHHHHHHHHh-CCCCChHHHH
Confidence 478888999986 477777755 34444555444 34444333 2235799999998865 7788889999
Q ss_pred HHHHHHHHH
Q 004834 437 ERNLAALAR 445 (728)
Q Consensus 437 ~~~I~~l~r 445 (728)
++.|++.+.
T Consensus 362 ~~~i~~a~~ 370 (445)
T TIGR02915 362 ENKVKRAVI 370 (445)
T ss_pred HHHHHHHHH
Confidence 988887763
No 202
>PRK04132 replication factor C small subunit; Provisional
Probab=99.18 E-value=1.4e-10 Score=137.29 Aligned_cols=163 Identities=19% Similarity=0.218 Sum_probs=116.8
Q ss_pred CCCEEEEEc--CCCCChhHHHHHHHHHh-----CCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCC---C
Q 004834 239 RGPVLCFVG--PPGVGKTSLASSIASAL-----GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVC---N 308 (728)
Q Consensus 239 ~~~~lLL~G--PpGtGKT~LakalA~~l-----~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~---~ 308 (728)
|+-+-+..| |++.||||+|+++|+.+ +.+++.++.+.......++ ..+.+.....+.. .
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR-----------~iIk~~a~~~~~~~~~~ 631 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIR-----------EKVKEFARTKPIGGASF 631 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHH-----------HHHHHHHhcCCcCCCCC
Confidence 344555678 99999999999999998 3467888877643333322 1111222222221 2
Q ss_pred cEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHH
Q 004834 309 PVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPE 388 (728)
Q Consensus 309 ~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~e 388 (728)
.|+||||+|.+..+. +++|+..|+.. ..++.||++||.++.+.+++++||.++.|++++.+
T Consensus 632 KVvIIDEaD~Lt~~A----QnALLk~lEep---------------~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~ 692 (846)
T PRK04132 632 KIIFLDEADALTQDA----QQALRRTMEMF---------------SSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDE 692 (846)
T ss_pred EEEEEECcccCCHHH----HHHHHHHhhCC---------------CCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHH
Confidence 499999999998765 99999999842 23568999999999999999999999999999999
Q ss_pred HHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHH
Q 004834 389 EKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAAL 443 (728)
Q Consensus 389 e~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l 443 (728)
+....++... +. .++.++++++..+++.+.+ .+|..-+.++.+
T Consensus 693 ~i~~~L~~I~-----~~-----Egi~i~~e~L~~Ia~~s~G--DlR~AIn~Lq~~ 735 (846)
T PRK04132 693 DIAKRLRYIA-----EN-----EGLELTEEGLQAILYIAEG--DMRRAINILQAA 735 (846)
T ss_pred HHHHHHHHHH-----Hh-----cCCCCCHHHHHHHHHHcCC--CHHHHHHHHHHH
Confidence 9888777652 22 2367899999999986654 344444444443
No 203
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.18 E-value=2.7e-10 Score=129.76 Aligned_cols=212 Identities=21% Similarity=0.280 Sum_probs=141.8
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCccc---hhhhccCcc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKD---EADIRGHRR 287 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~~---~s~l~g~~~ 287 (728)
+++|.......+...+.... .....+++.|++|||||++|+++..... .+|+.++|+.... .+++.||..
T Consensus 139 ~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~ 214 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEK 214 (469)
T ss_pred cceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCC
Confidence 35566555555555443221 2345699999999999999999999874 5899999988643 456677764
Q ss_pred c-cccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC
Q 004834 288 T-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA 366 (728)
Q Consensus 288 ~-yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~ 366 (728)
+ |.|..... ...+..+ .++.+|||||+.++... +..|+++++..+........ ...+ ++.+|+||+..
T Consensus 215 g~~~~~~~~~-~g~~~~a--~~Gtl~l~~i~~l~~~~----q~~L~~~l~~~~~~~~~~~~-~~~~---~~rii~~~~~~ 283 (469)
T PRK10923 215 GAFTGANTIR-QGRFEQA--DGGTLFLDEIGDMPLDV----QTRLLRVLADGQFYRVGGYA-PVKV---DVRIIAATHQN 283 (469)
T ss_pred CCCCCCCcCC-CCCeeEC--CCCEEEEeccccCCHHH----HHHHHHHHhcCcEEeCCCCC-eEEe---eEEEEEeCCCC
Confidence 3 33332211 0112222 35699999999999877 89999999865433222211 2222 45688888764
Q ss_pred -------CCCChhhhCCee--EEEcCCCCH--HHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHH
Q 004834 367 -------QPIPPPLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 435 (728)
Q Consensus 367 -------~~l~~~Ll~R~~--vI~~~~~t~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~ 435 (728)
..|.+.|..|+. .|.+|++.. ++...++..++. +....++. ....++++++..|.. |.+-.++|+
T Consensus 284 l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~-~~~~~~~~--~~~~~~~~a~~~L~~-~~wpgNv~e 359 (469)
T PRK10923 284 LEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQ-VAARELGV--EAKLLHPETEAALTR-LAWPGNVRQ 359 (469)
T ss_pred HHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHH-HHHHHcCC--CCCCcCHHHHHHHHh-CCCCChHHH
Confidence 368899999995 577888765 555666666653 33344432 234689999998865 888899999
Q ss_pred HHHHHHHHH
Q 004834 436 LERNLAALA 444 (728)
Q Consensus 436 L~~~I~~l~ 444 (728)
|++.|++++
T Consensus 360 L~~~i~~~~ 368 (469)
T PRK10923 360 LENTCRWLT 368 (469)
T ss_pred HHHHHHHHH
Confidence 999988876
No 204
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.15 E-value=1.8e-10 Score=129.58 Aligned_cols=171 Identities=13% Similarity=0.234 Sum_probs=109.3
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhC--C---CeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEec
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALG--R---KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 315 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~--~---~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDE 315 (728)
..++|+||+|+|||+|++++++.+. . ....++...+ ...+... .+...+.+ +.++..-...++++|||
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f--~~~~~~~----l~~~~~~~-~~~~~~~~~~dvLiIDD 214 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF--ARKAVDI----LQKTHKEI-EQFKNEICQNDVLIIDD 214 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HHHHHHH----HHHhhhHH-HHHHHHhccCCEEEEec
Confidence 4588999999999999999999763 2 2222222211 1111100 00000122 22322222346999999
Q ss_pred ccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC----CCCChhhhCCee---EEEcCCCCHH
Q 004834 316 IDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA----QPIPPPLLDRME---VIELPGYTPE 388 (728)
Q Consensus 316 idkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~----~~l~~~Ll~R~~---vI~~~~~t~e 388 (728)
++.+..+. ..+..|+.+++..... .+ .+|.|+|.+ ..+++.|.+||. ++.+.+|+.+
T Consensus 215 iq~l~~k~--~~~e~lf~l~N~~~~~-------------~k-~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e 278 (450)
T PRK14087 215 VQFLSYKE--KTNEIFFTIFNNFIEN-------------DK-QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNK 278 (450)
T ss_pred cccccCCH--HHHHHHHHHHHHHHHc-------------CC-cEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHH
Confidence 99886432 1257788877643211 12 355666654 257899999995 7999999999
Q ss_pred HHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHH
Q 004834 389 EKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 389 e~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
++.+|+++.+. ..|+ .+.++++++.+|+..+. ..+|.|...+.++.
T Consensus 279 ~r~~iL~~~~~-----~~gl---~~~l~~evl~~Ia~~~~--gd~R~L~gaL~~l~ 324 (450)
T PRK14087 279 TATAIIKKEIK-----NQNI---KQEVTEEAINFISNYYS--DDVRKIKGSVSRLN 324 (450)
T ss_pred HHHHHHHHHHH-----hcCC---CCCCCHHHHHHHHHccC--CCHHHHHHHHHHHH
Confidence 99999999853 2332 14799999999999776 45777777777665
No 205
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=2.3e-10 Score=123.48 Aligned_cols=140 Identities=19% Similarity=0.269 Sum_probs=93.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeE--EEecCCccchhhh--ccCcccc-c-----cC--CcchHHHH---Hhh
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFI--RISLGGVKDEADI--RGHRRTY-I-----GS--MPGRLIDG---LKR 303 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~--~i~~~~~~~~s~l--~g~~~~y-v-----G~--~~g~l~~~---~~~ 303 (728)
-++.+||+||+|+|||++|+.+|+.+.+... .-.|+.-++-..+ ..|+.-+ + +. .-..+.+. +..
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 3456999999999999999999999854210 0111110000000 0111100 0 00 01233333 333
Q ss_pred cCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEE
Q 004834 304 VGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIE 381 (728)
Q Consensus 304 a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~ 381 (728)
.+.. ..|++||++|++.... +|+||..|++- ..+++||++|+.++.++|.++|||..+.
T Consensus 101 ~~~~~~~kv~iI~~a~~m~~~a----aNaLLK~LEEP---------------p~~~~fiL~t~~~~~ll~TI~SRc~~~~ 161 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMNRNA----ANALLKSLEEP---------------SGDTVLLLISHQPSRLLPTIKSRCQQQA 161 (328)
T ss_pred ccccCCCeEEEECChhhCCHHH----HHHHHHHHhCC---------------CCCeEEEEEECChhhCcHHHHhhceeee
Confidence 3322 2399999999998876 99999999852 2467899999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHh
Q 004834 382 LPGYTPEEKLRIAMRH 397 (728)
Q Consensus 382 ~~~~t~ee~~~Il~~~ 397 (728)
|++++.++....+...
T Consensus 162 ~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 162 CPLPSNEESLQWLQQA 177 (328)
T ss_pred CCCcCHHHHHHHHHHh
Confidence 9999999888777654
No 206
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.14 E-value=3.2e-10 Score=128.43 Aligned_cols=156 Identities=27% Similarity=0.377 Sum_probs=96.2
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCe--EEEecCCccchhhhc------cC
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKF--IRISLGGVKDEADIR------GH 285 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~--~~i~~~~~~~~s~l~------g~ 285 (728)
+++|++.+++.+.-.+ ..+.+++|+||||||||+++++++..+.... ..+..+..++..... ..
T Consensus 193 dv~Gq~~~~~al~~aa--------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~ 264 (499)
T TIGR00368 193 DIKGQQHAKRALEIAA--------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQ 264 (499)
T ss_pred HhcCcHHHHhhhhhhc--------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhcccccccc
Confidence 6899998877665543 3557899999999999999999998774321 122222221111100 00
Q ss_pred c-----------cccccC----CcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCe
Q 004834 286 R-----------RTYIGS----MPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNV 350 (728)
Q Consensus 286 ~-----------~~yvG~----~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~ 350 (728)
+ ...+|. .+|.+ ..+ .++++||||++.+.+.. ++.|++.|+..+...... ....
T Consensus 265 ~Pf~~p~~s~s~~~~~ggg~~~~pG~i----~lA--~~GvLfLDEi~e~~~~~----~~~L~~~LE~~~v~i~r~-g~~~ 333 (499)
T TIGR00368 265 RPFRSPHHSASKPALVGGGPIPLPGEI----SLA--HNGVLFLDELPEFKRSV----LDALREPIEDGSISISRA-SAKI 333 (499)
T ss_pred CCccccccccchhhhhCCccccchhhh----hcc--CCCeEecCChhhCCHHH----HHHHHHHHHcCcEEEEec-Ccce
Confidence 0 011111 11222 222 35799999999998776 899999998654211010 0011
Q ss_pred eecCCCcEEEEecCCC------C-----------------CCChhhhCCee-EEEcCCCCHHH
Q 004834 351 PFDLSKVIFVATANRA------Q-----------------PIPPPLLDRME-VIELPGYTPEE 389 (728)
Q Consensus 351 ~~d~~~vi~I~TtN~~------~-----------------~l~~~Ll~R~~-vI~~~~~t~ee 389 (728)
.+ ..++.+|+++|.. . .++.+|+|||+ .+.++.++.++
T Consensus 334 ~~-pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 334 FY-PARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred ec-cCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 11 2367899999963 1 59999999999 58888876654
No 207
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=6.4e-10 Score=129.15 Aligned_cols=177 Identities=23% Similarity=0.322 Sum_probs=130.4
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh----------CCCeEEEecCCccchhhh
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEADI 282 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l----------~~~~~~i~~~~~~~~s~l 282 (728)
..++|.++.++++.+.+..+. ..+-+|+|+||||||.++..+|... +...+.++++....-
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAG--- 240 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRT------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAG--- 240 (786)
T ss_pred CCCcChHHHHHHHHHHHhccC------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhcc---
Confidence 368999999999999886443 2244799999999999999999887 234455555543222
Q ss_pred ccCccccccCCcchHHHHHhhcCCC-CcEEEEecccccCCCC-----CCCHHHHHHHhcCcccccccccCCCCeeecCCC
Q 004834 283 RGHRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDV-----RGDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 356 (728)
Q Consensus 283 ~g~~~~yvG~~~g~l~~~~~~a~~~-~~VlllDEidkl~~~~-----~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~ 356 (728)
.+|-|..+.++...+...... +.|+|||||+.+-... ..|..|.|...|..+.
T Consensus 241 ----akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe----------------- 299 (786)
T COG0542 241 ----AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE----------------- 299 (786)
T ss_pred ----ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-----------------
Confidence 268888887777776655433 4599999999986533 2456777888886432
Q ss_pred cEEEEecCCCC-----CCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHH
Q 004834 357 VIFVATANRAQ-----PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQ 425 (728)
Q Consensus 357 vi~I~TtN~~~-----~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~ 425 (728)
.-+|++|+..+ .-|+||-+||+.|.+..|+.++-..|++- +.+++...|+ +.++|+++.+.+.
T Consensus 300 L~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG-lk~~yE~hH~-----V~i~D~Al~aAv~ 367 (786)
T COG0542 300 LRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRG-LKERYEAHHG-----VRITDEALVAAVT 367 (786)
T ss_pred eEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHH-HHHHHHHccC-----ceecHHHHHHHHH
Confidence 34566555433 56899999999999999999999999976 4566666665 7899999888776
No 208
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=9.8e-10 Score=120.07 Aligned_cols=209 Identities=19% Similarity=0.236 Sum_probs=137.7
Q ss_pred ccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCC-----eEEEecCCccchhhhccCc---
Q 004834 215 HYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK-----FIRISLGGVKDEADIRGHR--- 286 (728)
Q Consensus 215 i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~-----~~~i~~~~~~~~s~l~g~~--- 286 (728)
+-+.+..++.+..++.-... ...+.+++++||||||||.+++-+++.+..+ ++.++|-...++..+...-
T Consensus 19 l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 19 LPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 44556666666666543332 2445569999999999999999999998543 7889988876655443211
Q ss_pred ---cccccCCcchHHHHHhhc---CCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEE
Q 004834 287 ---RTYIGSMPGRLIDGLKRV---GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFV 360 (728)
Q Consensus 287 ---~~yvG~~~g~l~~~~~~a---~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I 360 (728)
....|.....+.+.+.+. .....|++|||+|.+.... ...|++++...... ..++.+|
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~----~~~LY~L~r~~~~~------------~~~v~vi 160 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD----GEVLYSLLRAPGEN------------KVKVSII 160 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc----chHHHHHHhhcccc------------ceeEEEE
Confidence 112333333333333222 1123488999999998765 36677766432110 3457888
Q ss_pred EecCCCC---CCChhhhCCee--EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHH
Q 004834 361 ATANRAQ---PIPPPLLDRME--VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 435 (728)
Q Consensus 361 ~TtN~~~---~l~~~Ll~R~~--vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~ 435 (728)
+.+|... .++|.+.+|+. .|.|++|+.+|...|++.... .++ ..-.+++.+++.++.......| +
T Consensus 161 ~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~------~~~--~~~~~~~~vl~lia~~~a~~~G--D 230 (366)
T COG1474 161 AVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVE------EGF--SAGVIDDDVLKLIAALVAAESG--D 230 (366)
T ss_pred EEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHH------hhc--cCCCcCccHHHHHHHHHHHcCc--c
Confidence 9998874 78999999884 599999999999999988742 222 2356899999999876666564 2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004834 436 LERNLAALARAAAVKVA 452 (728)
Q Consensus 436 L~~~I~~l~r~a~~~~~ 452 (728)
. |.--.+||.|+..+-
T Consensus 231 A-R~aidilr~A~eiAe 246 (366)
T COG1474 231 A-RKAIDILRRAGEIAE 246 (366)
T ss_pred H-HHHHHHHHHHHHHHH
Confidence 2 333456666554443
No 209
>PRK15115 response regulator GlrR; Provisional
Probab=99.11 E-value=1e-09 Score=124.11 Aligned_cols=192 Identities=21% Similarity=0.322 Sum_probs=126.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCccc---hhhhccCcccc-ccCCcchHHHHHhhcCCCCcEE
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKD---EADIRGHRRTY-IGSMPGRLIDGLKRVGVCNPVM 311 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~~---~s~l~g~~~~y-vG~~~g~l~~~~~~a~~~~~Vl 311 (728)
....+++.|++|||||++|+++..... .+|+.++|..... .+.+.|+..+. .|..... ...+..+ .++.+
T Consensus 156 ~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~-~g~~~~a--~~gtl 232 (444)
T PRK15115 156 SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNR-EGLFQAA--EGGTL 232 (444)
T ss_pred CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCC-CCcEEEC--CCCEE
Confidence 345689999999999999999998864 6899999987633 34556665432 2221110 0112222 35699
Q ss_pred EEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC-------CCCChhhhCCeeE--EEc
Q 004834 312 LLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-------QPIPPPLLDRMEV--IEL 382 (728)
Q Consensus 312 llDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~-------~~l~~~Ll~R~~v--I~~ 382 (728)
|||||+.+++.. +..|+++++..+........ ... .++.+|+||+.. ..|.+.|..|+.. |.+
T Consensus 233 ~l~~i~~l~~~~----q~~L~~~l~~~~~~~~g~~~-~~~---~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~l 304 (444)
T PRK15115 233 FLDEIGDMPAPL----QVKLLRVLQERKVRPLGSNR-DID---IDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKI 304 (444)
T ss_pred EEEccccCCHHH----HHHHHHHHhhCCEEeCCCCc-eee---eeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecC
Confidence 999999999887 89999999865432222211 122 245788888764 2677888888864 666
Q ss_pred CCCCH--HHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHH
Q 004834 383 PGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALAR 445 (728)
Q Consensus 383 ~~~t~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r 445 (728)
|++.. ++...+++.++ .+....++. ....++++++..|.. |.+..++|+|++.|+..|.
T Consensus 305 PpLr~R~eDi~~l~~~~l-~~~~~~~~~--~~~~~~~~a~~~L~~-~~WpgNvreL~~~i~~~~~ 365 (444)
T PRK15115 305 PALAERTEDIPLLANHLL-RQAAERHKP--FVRAFSTDAMKRLMT-ASWPGNVRQLVNVIEQCVA 365 (444)
T ss_pred CChHhccccHHHHHHHHH-HHHHHHhCC--CCCCcCHHHHHHHHh-CCCCChHHHHHHHHHHHHH
Confidence 66544 23334445544 333333331 224689999999865 8888999999999988773
No 210
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.10 E-value=3.8e-10 Score=129.92 Aligned_cols=207 Identities=22% Similarity=0.230 Sum_probs=125.5
Q ss_pred HHHhhhccccchHHHHHHHHHHHHhhccCCCCC------CCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchh
Q 004834 207 AKERLDSDHYGLVRVKQRIIEYLAVRKLKPDAR------GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA 280 (728)
Q Consensus 207 ~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~------~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s 280 (728)
+-+.+...++|.+.+|+.|.-.+-..-....+. --|+||+|.||||||.|.+.+++.+.+..+ .+..+ .+..
T Consensus 280 l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vy-tsgkg-ss~~ 357 (682)
T COG1241 280 LIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVY-TSGKG-SSAA 357 (682)
T ss_pred HHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEE-Ecccc-cccc
Confidence 334456779999999998876664322111111 138999999999999999999998865433 11111 1111
Q ss_pred hhccC--ccccccC---CcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecC-
Q 004834 281 DIRGH--RRTYIGS---MPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDL- 354 (728)
Q Consensus 281 ~l~g~--~~~yvG~---~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~- 354 (728)
.+-.. +....|. ..|.+ - ...++|..|||+||+.... .+++++.|+.. +......|+..-+
T Consensus 358 GLTAav~rd~~tge~~LeaGAL----V--lAD~Gv~cIDEfdKm~~~d----r~aihEaMEQQ---tIsIaKAGI~atLn 424 (682)
T COG1241 358 GLTAAVVRDKVTGEWVLEAGAL----V--LADGGVCCIDEFDKMNEED----RVAIHEAMEQQ---TISIAKAGITATLN 424 (682)
T ss_pred CceeEEEEccCCCeEEEeCCEE----E--EecCCEEEEEeccCCChHH----HHHHHHHHHhc---Eeeecccceeeecc
Confidence 11000 0000110 01111 1 1245799999999998765 79999999853 3333344544433
Q ss_pred CCcEEEEecCCCC-------------CCChhhhCCeeE--EEcCCCCHHHHHHHHHHhhc--------------------
Q 004834 355 SKVIFVATANRAQ-------------PIPPPLLDRMEV--IELPGYTPEEKLRIAMRHLI-------------------- 399 (728)
Q Consensus 355 ~~vi~I~TtN~~~-------------~l~~~Ll~R~~v--I~~~~~t~ee~~~Il~~~l~-------------------- 399 (728)
..+-++|++|+.. .+|++|++|||. +....++++.-..++.+.+.
T Consensus 425 ARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~ 504 (682)
T COG1241 425 ARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVE 504 (682)
T ss_pred hhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccc
Confidence 4577889999875 799999999994 44555665444444433332
Q ss_pred -------hHHHhhcCCCccccccCHHHHHHHHHHccc
Q 004834 400 -------PRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 429 (728)
Q Consensus 400 -------~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~ 429 (728)
.+.... .-.+..+.+++++.+.|.+.|..
T Consensus 505 ~~~~~~lrkYI~Y-AR~~v~P~lt~ea~e~l~~~Yv~ 540 (682)
T COG1241 505 ERDFELLRKYISY-ARKNVTPVLTEEAREELEDYYVE 540 (682)
T ss_pred cCcHHHHHHHHHH-HhccCCcccCHHHHHHHHHHHHH
Confidence 111111 11123478999999999998875
No 211
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.10 E-value=6.8e-10 Score=112.56 Aligned_cols=161 Identities=22% Similarity=0.292 Sum_probs=113.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHh-C--CCeEEEecCCccchhhh------------ccCccccccCCcchHHHH-Hh
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASAL-G--RKFIRISLGGVKDEADI------------RGHRRTYIGSMPGRLIDG-LK 302 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l-~--~~~~~i~~~~~~~~s~l------------~g~~~~yvG~~~g~l~~~-~~ 302 (728)
.-||++||||+|+||-|.+.++-+.+ | ..-.++....+.+++.- ..-.|.-.|.....+.+- ++
T Consensus 33 d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellK 112 (351)
T KOG2035|consen 33 DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLK 112 (351)
T ss_pred CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHH
Confidence 34899999999999999999999888 2 22333433333222211 000122344444333322 22
Q ss_pred hcCC----------CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChh
Q 004834 303 RVGV----------CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPP 372 (728)
Q Consensus 303 ~a~~----------~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~ 372 (728)
.... .-.|++|-|+|++..+. +.+|...|+.. .+++-+|+.+|..+.+-+|
T Consensus 113 evAQt~qie~~~qr~fKvvvi~ead~LT~dA----Q~aLRRTMEkY---------------s~~~RlIl~cns~SriIep 173 (351)
T KOG2035|consen 113 EVAQTQQIETQGQRPFKVVVINEADELTRDA----QHALRRTMEKY---------------SSNCRLILVCNSTSRIIEP 173 (351)
T ss_pred HHHhhcchhhccccceEEEEEechHhhhHHH----HHHHHHHHHHH---------------hcCceEEEEecCcccchhH
Confidence 2111 11299999999998876 89999999852 3467899999999999999
Q ss_pred hhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcc
Q 004834 373 LLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT 428 (728)
Q Consensus 373 Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~ 428 (728)
+++||-.|.++.|+.++...++...+. ++++.+.++.+..+++...
T Consensus 174 IrSRCl~iRvpaps~eeI~~vl~~v~~----------kE~l~lp~~~l~rIa~kS~ 219 (351)
T KOG2035|consen 174 IRSRCLFIRVPAPSDEEITSVLSKVLK----------KEGLQLPKELLKRIAEKSN 219 (351)
T ss_pred HhhheeEEeCCCCCHHHHHHHHHHHHH----------HhcccCcHHHHHHHHHHhc
Confidence 999999999999999999999888742 3457788999999988654
No 212
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.10 E-value=1.4e-09 Score=117.36 Aligned_cols=172 Identities=20% Similarity=0.257 Sum_probs=108.9
Q ss_pred hccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEec----CCccch---hh---
Q 004834 212 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL----GGVKDE---AD--- 281 (728)
Q Consensus 212 ~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~----~~~~~~---s~--- 281 (728)
..-++|++..+..+..... ++.-.++|+.|+.|+||||++|+||..|..--....| .-..-. ..
T Consensus 16 f~aivGqd~lk~aL~l~av------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~ 89 (423)
T COG1239 16 FTAIVGQDPLKLALGLNAV------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRA 89 (423)
T ss_pred hhhhcCchHHHHHHhhhhc------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHh
Confidence 3457899998887766422 2344579999999999999999999999532222211 110000 00
Q ss_pred ----------------hccCc-----cccccCCcchHHHHHhh----------cCCCCcEEEEecccccCCCCCCCHHHH
Q 004834 282 ----------------IRGHR-----RTYIGSMPGRLIDGLKR----------VGVCNPVMLLDEIDKTGSDVRGDPASA 330 (728)
Q Consensus 282 ----------------l~g~~-----~~yvG~~~g~l~~~~~~----------a~~~~~VlllDEidkl~~~~~~~~~~~ 330 (728)
+.+.| ...+|... +..+++. +..+.+|+++||+..+.... ++.
T Consensus 90 k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslD--i~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~l----vd~ 163 (423)
T COG1239 90 KGDELEWLPREKRKVPFVALPLGATEDRLVGSLD--IEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHL----VDA 163 (423)
T ss_pred hccccccccccceecceecCCCccchhhhccccC--HHHHHhcCccccCCcchhhccCCEEEEeccccccHHH----HHH
Confidence 00000 01222211 2222221 22345699999999998777 999
Q ss_pred HHHhcCcccccccccCCCCeeec-CCCcEEEEecCCCC-CCChhhhCCee-EEEcCCC-CHHHHHHHHHHhh
Q 004834 331 LLEVLDPEQNKTFNDHYLNVPFD-LSKVIFVATANRAQ-PIPPPLLDRME-VIELPGY-TPEEKLRIAMRHL 398 (728)
Q Consensus 331 Ll~~Ld~~~~~~~~d~~~~~~~d-~~~vi~I~TtN~~~-~l~~~Ll~R~~-vI~~~~~-t~ee~~~Il~~~l 398 (728)
||+++..+.|..-.+ |+.+. ..++++|+|+|+-+ .|.|.|++||- .|...++ +.+++.+|+++.+
T Consensus 164 LLd~aaeG~n~vere---Gisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~ 232 (423)
T COG1239 164 LLDVAAEGVNDVERE---GISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRL 232 (423)
T ss_pred HHHHHHhCCceeeeC---ceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHH
Confidence 999999864432222 33442 34679999999975 79999999996 5666654 5588888887754
No 213
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.09 E-value=1.2e-09 Score=124.05 Aligned_cols=190 Identities=19% Similarity=0.343 Sum_probs=125.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccc---hhhhccCccc-cccCCcchHHHHHhhcCCCCcEEE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKD---EADIRGHRRT-YIGSMPGRLIDGLKRVGVCNPVML 312 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~---~s~l~g~~~~-yvG~~~g~l~~~~~~a~~~~~Vll 312 (728)
...+++.|++||||+++|+++.... +.+|+.++|..... .+.+.|+..+ +.|..... ...+..+ .++++|
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~-~g~~~~a--~~gtl~ 242 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLR-QGLFERA--NEGTLL 242 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCC-CCceEEC--CCCEEE
Confidence 4568999999999999999998875 46899999987643 3455665432 22221111 1112222 356999
Q ss_pred EecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC-------CCCChhhhCCee--EEEcC
Q 004834 313 LDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-------QPIPPPLLDRME--VIELP 383 (728)
Q Consensus 313 lDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~-------~~l~~~Ll~R~~--vI~~~ 383 (728)
||||+.+++.. +..|+++++.........+ ...+ .++.+|+|||.. ..+.+.|..|+. .|.+|
T Consensus 243 ld~i~~l~~~~----q~~L~~~l~~~~~~~~~~~-~~~~---~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~p 314 (457)
T PRK11361 243 LDEIGEMPLVL----QAKLLRILQEREFERIGGH-QTIK---VDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILP 314 (457)
T ss_pred EechhhCCHHH----HHHHHHHHhcCcEEeCCCC-ceee---eceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCC
Confidence 99999999887 8999999986432221111 1122 245688888865 368888999986 46677
Q ss_pred CCCH--HHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHH
Q 004834 384 GYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 384 ~~t~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
++.. ++...++..++ .+....++ .....++++++..+.. |.+..++|+|++.|+..+
T Consensus 315 pLreR~~di~~l~~~~l-~~~~~~~~--~~~~~~~~~a~~~L~~-~~wpgNv~eL~~~~~~~~ 373 (457)
T PRK11361 315 PLRDRREDISLLANHFL-QKFSSENQ--RDIIDIDPMAMSLLTA-WSWPGNIRELSNVIERAV 373 (457)
T ss_pred ChhhchhhHHHHHHHHH-HHHHHHcC--CCCCCcCHHHHHHHHc-CCCCCcHHHHHHHHHHHH
Confidence 7653 34444444443 33333333 2235789999988865 888889999999888876
No 214
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.08 E-value=1.2e-10 Score=120.35 Aligned_cols=186 Identities=20% Similarity=0.191 Sum_probs=122.1
Q ss_pred HcCCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 004834 189 ADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKF 268 (728)
Q Consensus 189 ~~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~ 268 (728)
..+||.+......++ ++++++++...+.++... ..-|++||+||||+|||+...+.|..+..+.
T Consensus 27 ~~~pwvekyrP~~l~----------dv~~~~ei~st~~~~~~~------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~ 90 (360)
T KOG0990|consen 27 YPQPWVEKYRPPFLG----------IVIKQEPIWSTENRYSGM------PGLPHLLFYGPPGTGKTSTILANARDFYSPH 90 (360)
T ss_pred cCCCCccCCCCchhh----------hHhcCCchhhHHHHhccC------CCCCcccccCCCCCCCCCchhhhhhhhcCCC
Confidence 457998877773333 578888888877777432 3446999999999999999999999986642
Q ss_pred EEEecCCccchhhhccCccccccCCcchH--HHHHhh---cCC--CCcEEEEecccccCCCCCCCHHHHHHHhcCccccc
Q 004834 269 IRISLGGVKDEADIRGHRRTYIGSMPGRL--IDGLKR---VGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNK 341 (728)
Q Consensus 269 ~~i~~~~~~~~s~l~g~~~~yvG~~~g~l--~~~~~~---a~~--~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~ 341 (728)
..-++--.+..++-+| ++-...++ +...+. ... .-..++|||.|.+..+. +++|.++.+..
T Consensus 91 ~~~~m~lelnaSd~rg-----id~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~A----QnALRRviek~--- 158 (360)
T KOG0990|consen 91 PTTSMLLELNASDDRG-----IDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDA----QNALRRVIEKY--- 158 (360)
T ss_pred CchhHHHHhhccCccC-----CcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHH----HHHHHHHHHHh---
Confidence 1111111112222222 11111111 111110 000 11389999999998776 99999877632
Q ss_pred ccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHH
Q 004834 342 TFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVK 421 (728)
Q Consensus 342 ~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~ 421 (728)
+ .++.|+.-+|++..+.|++++||.-+.|.+++......++.++. ..+....+++...
T Consensus 159 --t----------~n~rF~ii~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~----------e~e~~~~~~~~~~ 216 (360)
T KOG0990|consen 159 --T----------ANTRFATISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIR----------ESEQKETNPEGYS 216 (360)
T ss_pred --c----------cceEEEEeccChhhcCchhhcccccCCCCCCChhhhhhHHHHHH----------hcchhhcCHHHHH
Confidence 2 24567788999999999999999999999999887777777663 2234566776666
Q ss_pred HHH
Q 004834 422 LVI 424 (728)
Q Consensus 422 ~l~ 424 (728)
.++
T Consensus 217 a~~ 219 (360)
T KOG0990|consen 217 ALG 219 (360)
T ss_pred HHH
Confidence 543
No 215
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=7.1e-10 Score=121.04 Aligned_cols=154 Identities=29% Similarity=0.389 Sum_probs=97.5
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCC----CeEEE----ecCC-ccc-----
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR----KFIRI----SLGG-VKD----- 278 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~----~~~~i----~~~~-~~~----- 278 (728)
.|+.||+.+|+.+....+ .+++++|+||||||||++|+.+...|.. ..+.+ ++.+ .+.
T Consensus 179 ~DV~GQ~~AKrAleiAAA--------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~ 250 (490)
T COG0606 179 KDVKGQEQAKRALEIAAA--------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLK 250 (490)
T ss_pred hhhcCcHHHHHHHHHHHh--------cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccc
Confidence 479999999999887663 5678999999999999999999888732 01111 0111 011
Q ss_pred -------------hhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCccccccccc
Q 004834 279 -------------EADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFND 345 (728)
Q Consensus 279 -------------~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d 345 (728)
...+.| ++--+.+|.+.- ..++|+||||+-...... .+.|.+=|+.++....
T Consensus 251 ~~rPFr~PHHsaS~~aLvG---GG~~p~PGeIsL------AH~GVLFLDElpef~~~i----Le~LR~PLE~g~i~Is-- 315 (490)
T COG0606 251 IHRPFRAPHHSASLAALVG---GGGVPRPGEISL------AHNGVLFLDELPEFKRSI----LEALREPLENGKIIIS-- 315 (490)
T ss_pred eeCCccCCCccchHHHHhC---CCCCCCCCceee------ecCCEEEeeccchhhHHH----HHHHhCccccCcEEEE--
Confidence 111111 111122233211 246799999988776554 7888888876543222
Q ss_pred CCCCeeec-CCCcEEEEecCCC-----------------------CCCChhhhCCee-EEEcCCCCHHHH
Q 004834 346 HYLNVPFD-LSKVIFVATANRA-----------------------QPIPPPLLDRME-VIELPGYTPEEK 390 (728)
Q Consensus 346 ~~~~~~~d-~~~vi~I~TtN~~-----------------------~~l~~~Ll~R~~-vI~~~~~t~ee~ 390 (728)
..+.++. ..++.+|+++|.. ..+..+|+||+| .++++.++..++
T Consensus 316 -Ra~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~ 384 (490)
T COG0606 316 -RAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGEL 384 (490)
T ss_pred -EcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHh
Confidence 2222232 2356788899974 278899999999 688888874443
No 216
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=6.2e-10 Score=119.37 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=93.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCe--EEEecCCccchhhh--ccCcccc-c----cCC--cchHHH---HHhhcC
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKF--IRISLGGVKDEADI--RGHRRTY-I----GSM--PGRLID---GLKRVG 305 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~--~~i~~~~~~~~s~l--~g~~~~y-v----G~~--~g~l~~---~~~~a~ 305 (728)
++.+||.||+|+||+++|+.+|+.+-+.- ..-.|+.-.+-..+ ..||.-+ + |.. -..+.+ .+...+
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~ 103 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHA 103 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcc
Confidence 45789999999999999999999985421 11112211000000 0111100 0 111 123333 333333
Q ss_pred CCCc--EEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcC
Q 004834 306 VCNP--VMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELP 383 (728)
Q Consensus 306 ~~~~--VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~ 383 (728)
..++ |++||++|++.... +|+||..|++- ..+++||.+|+.++.+.|.++|||..+.|+
T Consensus 104 ~~g~~KV~iI~~a~~m~~~A----aNaLLKtLEEP---------------p~~~~fiL~t~~~~~llpTI~SRC~~~~~~ 164 (325)
T PRK06871 104 QQGGNKVVYIQGAERLTEAA----ANALLKTLEEP---------------RPNTYFLLQADLSAALLPTIYSRCQTWLIH 164 (325)
T ss_pred ccCCceEEEEechhhhCHHH----HHHHHHHhcCC---------------CCCeEEEEEECChHhCchHHHhhceEEeCC
Confidence 3222 99999999998766 89999999863 356799999999999999999999999999
Q ss_pred CCCHHHHHHHHHHh
Q 004834 384 GYTPEEKLRIAMRH 397 (728)
Q Consensus 384 ~~t~ee~~~Il~~~ 397 (728)
+++.++..+.+...
T Consensus 165 ~~~~~~~~~~L~~~ 178 (325)
T PRK06871 165 PPEEQQALDWLQAQ 178 (325)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999887777653
No 217
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.06 E-value=7.6e-10 Score=113.70 Aligned_cols=148 Identities=26% Similarity=0.371 Sum_probs=97.9
Q ss_pred HhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCC-EEEEEcCCCCChhHHHHHHHHHhCCC-----eEEEecC
Q 004834 201 DLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGP-VLCFVGPPGVGKTSLASSIASALGRK-----FIRISLG 274 (728)
Q Consensus 201 ~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~-~lLL~GPpGtGKT~LakalA~~l~~~-----~~~i~~~ 274 (728)
..++..++..|+..++||.-+++.|...+......+.+..| .+-|+|+|||||...++.||+.+.+. ++.....
T Consensus 70 ~~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fva 149 (344)
T KOG2170|consen 70 RNDLDGLEKDLARALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVA 149 (344)
T ss_pred cccchHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhh
Confidence 34577788999999999999999999998877666665555 66799999999999999999998432 2222222
Q ss_pred CccchhhhccCccccccCCcchHHHHHhhc--CCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCee-
Q 004834 275 GVKDEADIRGHRRTYIGSMPGRLIDGLKRV--GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVP- 351 (728)
Q Consensus 275 ~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a--~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~- 351 (728)
..+-+. +.++......+...++.. ....+++++||+||+++.. ...|-. |.|.|..+.
T Consensus 150 t~hFP~------~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gL----ld~lkp---------fLdyyp~v~g 210 (344)
T KOG2170|consen 150 TLHFPH------ASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGL----LDVLKP---------FLDYYPQVSG 210 (344)
T ss_pred hccCCC------hHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhH----HHHHhh---------hhcccccccc
Confidence 211111 011111112222222221 2345799999999998754 344443 444444333
Q ss_pred ecCCCcEEEEecCCCC
Q 004834 352 FDLSKVIFVATANRAQ 367 (728)
Q Consensus 352 ~d~~~vi~I~TtN~~~ 367 (728)
+|+.+.+||.-+|...
T Consensus 211 v~frkaIFIfLSN~gg 226 (344)
T KOG2170|consen 211 VDFRKAIFIFLSNAGG 226 (344)
T ss_pred ccccceEEEEEcCCcc
Confidence 6889999999999864
No 218
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.06 E-value=1.8e-09 Score=122.68 Aligned_cols=212 Identities=20% Similarity=0.266 Sum_probs=140.2
Q ss_pred ccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccc---hhhhccCccc
Q 004834 215 HYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKD---EADIRGHRRT 288 (728)
Q Consensus 215 i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~---~s~l~g~~~~ 288 (728)
++|.......+...+.... .....+++.|.+||||+++|+++.... +.+|+.++|....+ .+.+.|+.++
T Consensus 136 lig~s~~~~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~ 211 (463)
T TIGR01818 136 LIGEAPAMQEVFRAIGRLS----RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKG 211 (463)
T ss_pred eeecCHHHHHHHHHHHHHh----CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCC
Confidence 5565555555555443321 234468999999999999999999876 35899999988643 3455665432
Q ss_pred -cccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC-
Q 004834 289 -YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA- 366 (728)
Q Consensus 289 -yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~- 366 (728)
|.|+.... ...+..+ .++.+|||||+.++... +..|+++|+.+.......+ ...++ ++.+|+|+|..
T Consensus 212 ~~~~~~~~~-~g~~~~a--~~gtl~l~ei~~l~~~~----q~~ll~~l~~~~~~~~~~~-~~~~~---~~rii~~~~~~l 280 (463)
T TIGR01818 212 AFTGANTRR-QGRFEQA--DGGTLFLDEIGDMPLDA----QTRLLRVLADGEFYRVGGR-TPIKV---DVRIVAATHQNL 280 (463)
T ss_pred CCCCcccCC-CCcEEEC--CCCeEEEEchhhCCHHH----HHHHHHHHhcCcEEECCCC-ceeee---eeEEEEeCCCCH
Confidence 22222111 1112222 25699999999999877 8999999986443222111 12222 34577887764
Q ss_pred ------CCCChhhhCCee--EEEcCCCC--HHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHH
Q 004834 367 ------QPIPPPLLDRME--VIELPGYT--PEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 436 (728)
Q Consensus 367 ------~~l~~~Ll~R~~--vI~~~~~t--~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L 436 (728)
..|.+.|..|+. .|.+|++. .++...++..++.. ....++. ....++++++..|.. |.+..++|+|
T Consensus 281 ~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~-~~~~~~~--~~~~~~~~a~~~L~~-~~wpgNvreL 356 (463)
T TIGR01818 281 EALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLAL-AARELDV--EPKLLDPEALERLKQ-LRWPGNVRQL 356 (463)
T ss_pred HHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHH-HHHHhCC--CCCCcCHHHHHHHHh-CCCCChHHHH
Confidence 368889999986 58888888 46777777776543 3333332 234789999999866 7888899999
Q ss_pred HHHHHHHHH
Q 004834 437 ERNLAALAR 445 (728)
Q Consensus 437 ~~~I~~l~r 445 (728)
++.+++.|.
T Consensus 357 ~~~~~~~~~ 365 (463)
T TIGR01818 357 ENLCRWLTV 365 (463)
T ss_pred HHHHHHHHH
Confidence 988888773
No 219
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.04 E-value=3e-09 Score=108.02 Aligned_cols=179 Identities=22% Similarity=0.289 Sum_probs=117.6
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCC---eEEEecCCccchhhhccCcccc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK---FIRISLGGVKDEADIRGHRRTY 289 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~---~~~i~~~~~~~~s~l~g~~~~y 289 (728)
++++|.+..++.+.+....-. ...+..++||+|++|||||++++++....... .+.+.-....+.
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l---------- 94 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDL---------- 94 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccH----------
Confidence 368999999999988764332 12455689999999999999999999888543 333332222211
Q ss_pred ccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCC
Q 004834 290 IGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPI 369 (728)
Q Consensus 290 vG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l 369 (728)
..+.+.++..+. .-|||+|++. -+........|-.+||.+ ..--..|+++.+|+|+-.-+
T Consensus 95 -----~~l~~~l~~~~~-kFIlf~DDLs---Fe~~d~~yk~LKs~LeGg-----------le~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 95 -----PELLDLLRDRPY-KFILFCDDLS---FEEGDTEYKALKSVLEGG-----------LEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred -----HHHHHHHhcCCC-CEEEEecCCC---CCCCcHHHHHHHHHhcCc-----------cccCCCcEEEEEecchhhcc
Confidence 244555554442 3499999743 333334478888899853 22236789999999985322
Q ss_pred Ch-----------------------hhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHH
Q 004834 370 PP-----------------------PLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQ 425 (728)
Q Consensus 370 ~~-----------------------~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~ 425 (728)
++ +|-+||- .|.|.+++.++-.+|++.++ +.+| +.++++.+..-+-
T Consensus 155 ~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~-----~~~g-----~~~~~e~l~~~Al 224 (249)
T PF05673_consen 155 PESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYA-----ERYG-----LELDEEELRQEAL 224 (249)
T ss_pred chhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHH-----HHcC-----CCCCHHHHHHHHH
Confidence 21 2446896 79999999999999999884 3344 5666555555555
Q ss_pred Hcccccch
Q 004834 426 RYTREAGV 433 (728)
Q Consensus 426 ~~~~~~G~ 433 (728)
.|....|.
T Consensus 225 ~wa~~rg~ 232 (249)
T PF05673_consen 225 QWALRRGG 232 (249)
T ss_pred HHHHHcCC
Confidence 55543343
No 220
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=7.9e-10 Score=118.41 Aligned_cols=138 Identities=17% Similarity=0.219 Sum_probs=90.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeEE-E-ec-------CCccchhhhccCccccccCC------cchHHHH---H
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFIR-I-SL-------GGVKDEADIRGHRRTYIGSM------PGRLIDG---L 301 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~~-i-~~-------~~~~~~s~l~g~~~~yvG~~------~g~l~~~---~ 301 (728)
++.+||+||+|+||+++|.++|+.+.+.-.. . .| .+.|-.-......+...|.. -..+.+. +
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 3459999999999999999999988442100 0 00 11110000000001111110 1122322 2
Q ss_pred hhcCCCC--cEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeE
Q 004834 302 KRVGVCN--PVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEV 379 (728)
Q Consensus 302 ~~a~~~~--~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~v 379 (728)
...+..+ -|++||++|++.... +|+||..|++- ..+++||.+|+.++.+.|.++|||..
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~~~A----aNaLLKtLEEP---------------p~~~~fiL~~~~~~~lLpTIrSRCq~ 166 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAINRAA----CNALLKTLEEP---------------SPGRYLWLISAQPARLPATIRSRCQR 166 (319)
T ss_pred hhCcccCCcEEEEeccHhhhCHHH----HHHHHHHhhCC---------------CCCCeEEEEECChhhCchHHHhhheE
Confidence 2233322 399999999998766 89999999852 34678999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHH
Q 004834 380 IELPGYTPEEKLRIAMR 396 (728)
Q Consensus 380 I~~~~~t~ee~~~Il~~ 396 (728)
+.|++++.++..+.+..
T Consensus 167 i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 167 LEFKLPPAHEALAWLLA 183 (319)
T ss_pred eeCCCcCHHHHHHHHHH
Confidence 99999999887776654
No 221
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=2.7e-09 Score=115.54 Aligned_cols=137 Identities=18% Similarity=0.153 Sum_probs=92.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCC--eEEEecCCc-----------cchhhhccCcc-ccccCCcchHH---HHH
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRK--FIRISLGGV-----------KDEADIRGHRR-TYIGSMPGRLI---DGL 301 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~--~~~i~~~~~-----------~~~s~l~g~~~-~yvG~~~g~l~---~~~ 301 (728)
-++.+||+||+|+||+++|+++|+.+-+. ...-.|+.= -|...+..... ..++ -..+. +.+
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~--idqiR~l~~~~ 100 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLG--VDAVREVTEKL 100 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCC--HHHHHHHHHHH
Confidence 34578999999999999999999998432 111122210 11111110000 0011 12233 333
Q ss_pred hhcCCCCc--EEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeE
Q 004834 302 KRVGVCNP--VMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEV 379 (728)
Q Consensus 302 ~~a~~~~~--VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~v 379 (728)
...+..+. |++||++|++.... +|+||..|++- ..+++||.+|+.++.+.|.++|||..
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~~~A----aNaLLKtLEEP---------------p~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLTDAA----ANALLKTLEEP---------------PENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred hhccccCCceEEEEcchHhhCHHH----HHHHHHHhcCC---------------CCCeEEEEEECChhhChHHHHhcccc
Confidence 33343222 99999999998876 89999999863 35679999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHH
Q 004834 380 IELPGYTPEEKLRIAMR 396 (728)
Q Consensus 380 I~~~~~t~ee~~~Il~~ 396 (728)
+.|++++.++....+..
T Consensus 162 ~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 162 HYLAPPPEQYALTWLSR 178 (334)
T ss_pred ccCCCCCHHHHHHHHHH
Confidence 99999999887776654
No 222
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=99.02 E-value=2.9e-09 Score=119.29 Aligned_cols=226 Identities=23% Similarity=0.265 Sum_probs=132.6
Q ss_pred HHHhhhccccchHHHHHHHHHHHHhhccCCCCC------CCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchh
Q 004834 207 AKERLDSDHYGLVRVKQRIIEYLAVRKLKPDAR------GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA 280 (728)
Q Consensus 207 ~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~------~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s 280 (728)
+...+...+||++++|+.++-.+-........+ .-++||+|.||||||.+.+.+++.+.+..+. +.-| .+.
T Consensus 423 La~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yT-SGkG-sSa- 499 (804)
T KOG0478|consen 423 LARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYT-SGKG-SSA- 499 (804)
T ss_pred HHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceee-cCCc-cch-
Confidence 344566789999999999887664332211111 1389999999999999999999998664431 1111 000
Q ss_pred hhccCccccccCCcchHHHHHhhc----CCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCC-
Q 004834 281 DIRGHRRTYIGSMPGRLIDGLKRV----GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS- 355 (728)
Q Consensus 281 ~l~g~~~~yvG~~~g~l~~~~~~a----~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~- 355 (728)
.|.. .|+-..+ .-.+.+... -..++|-.|||+||+.... .+.|+++|+.. +......|+-..+.
T Consensus 500 --vGLT-ayVtrd~-dtkqlVLesGALVLSD~GiCCIDEFDKM~dSt----rSvLhEvMEQQ---TvSIAKAGII~sLNA 568 (804)
T KOG0478|consen 500 --VGLT-AYVTKDP-DTRQLVLESGALVLSDNGICCIDEFDKMSDST----RSVLHEVMEQQ---TLSIAKAGIIASLNA 568 (804)
T ss_pred --hcce-eeEEecC-ccceeeeecCcEEEcCCceEEchhhhhhhHHH----HHHHHHHHHHh---hhhHhhcceeeeccc
Confidence 0100 1221111 111122111 1245699999999997665 79999999853 23333334433332
Q ss_pred CcEEEEecCCCC-------------CCChhhhCCeeE--EEcCCCCHHHHHHHHHH----hhc----------h----HH
Q 004834 356 KVIFVATANRAQ-------------PIPPPLLDRMEV--IELPGYTPEEKLRIAMR----HLI----------P----RV 402 (728)
Q Consensus 356 ~vi~I~TtN~~~-------------~l~~~Ll~R~~v--I~~~~~t~ee~~~Il~~----~l~----------~----~~ 402 (728)
.+-+++++|+.. .+||.|++||+. +.++.+++..-+.+..+ |.. . +.
T Consensus 569 R~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~ 648 (804)
T KOG0478|consen 569 RCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRD 648 (804)
T ss_pred cceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHH
Confidence 457889999753 799999999993 66777766533333333 221 0 01
Q ss_pred HhhcCCCccccccCHHHHHHHHHHccc------ccc-hHHHHHHHHHHHHH
Q 004834 403 LDQHGLGSEFLQIPEAMVKLVIQRYTR------EAG-VRNLERNLAALARA 446 (728)
Q Consensus 403 ~~~~~~~~~~~~i~d~~l~~l~~~~~~------~~G-~R~L~~~I~~l~r~ 446 (728)
...+........+++++...+...|.. ..| .-...|.++.+.|.
T Consensus 649 yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRl 699 (804)
T KOG0478|consen 649 YIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRL 699 (804)
T ss_pred HHHHHhccCCccccHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHH
Confidence 111111234567889999988886653 233 33445666666653
No 223
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=1.6e-09 Score=117.06 Aligned_cols=69 Identities=20% Similarity=0.299 Sum_probs=61.5
Q ss_pred EEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHH
Q 004834 310 VMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEE 389 (728)
Q Consensus 310 VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee 389 (728)
|++||++|++.... +|+||..|++- ..+++||++|+.++.+.|.++|||..+.|++++.++
T Consensus 135 V~iI~~ae~m~~~A----aNaLLKtLEEP---------------p~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~ 195 (342)
T PRK06964 135 VVVLYPAEALNVAA----ANALLKTLEEP---------------PPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEA 195 (342)
T ss_pred EEEEechhhcCHHH----HHHHHHHhcCC---------------CcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHH
Confidence 99999999998776 89999999853 356799999999999999999999999999999998
Q ss_pred HHHHHHHh
Q 004834 390 KLRIAMRH 397 (728)
Q Consensus 390 ~~~Il~~~ 397 (728)
..+.+...
T Consensus 196 ~~~~L~~~ 203 (342)
T PRK06964 196 AAAWLAAQ 203 (342)
T ss_pred HHHHHHHc
Confidence 88877653
No 224
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.00 E-value=2.1e-09 Score=117.29 Aligned_cols=173 Identities=21% Similarity=0.292 Sum_probs=114.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecc
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEI 316 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEi 316 (728)
...++|+||+|.|||+|++++++... .+...+.++...-..+ ++-+....-.+.|+..- .-.+++||+|
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~-------~v~a~~~~~~~~Fk~~y-~~dlllIDDi 184 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTND-------FVKALRDNEMEKFKEKY-SLDLLLIDDI 184 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHH-------HHHHHHhhhHHHHHHhh-ccCeeeechH
Confidence 44688999999999999999998873 2223333332111000 11111112233444443 4469999999
Q ss_pred cccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecC-CCC---CCChhhhCCee---EEEcCCCCHHH
Q 004834 317 DKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATAN-RAQ---PIPPPLLDRME---VIELPGYTPEE 389 (728)
Q Consensus 317 dkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN-~~~---~l~~~Ll~R~~---vI~~~~~t~ee 389 (728)
+.+..+.+ .+..|+..+..-. +..+ .+|.|+. .|. .+.|.|.+||. ++.+.+|+.+.
T Consensus 185 q~l~gk~~--~qeefFh~FN~l~-------------~~~k-qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~ 248 (408)
T COG0593 185 QFLAGKER--TQEEFFHTFNALL-------------ENGK-QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDET 248 (408)
T ss_pred hHhcCChh--HHHHHHHHHHHHH-------------hcCC-EEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHH
Confidence 99987532 2666666664321 1222 3445554 443 46699999995 69999999999
Q ss_pred HHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHHHHH
Q 004834 390 KLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAA 448 (728)
Q Consensus 390 ~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~a~ 448 (728)
+..|+++.. + ..++.++++++.+++.+.. ..+|.|+..+.++...+.
T Consensus 249 r~aiL~kka-----~-----~~~~~i~~ev~~~la~~~~--~nvReLegaL~~l~~~a~ 295 (408)
T COG0593 249 RLAILRKKA-----E-----DRGIEIPDEVLEFLAKRLD--RNVRELEGALNRLDAFAL 295 (408)
T ss_pred HHHHHHHHH-----H-----hcCCCCCHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHH
Confidence 999998852 2 2357899999999999876 568899999988886543
No 225
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.99 E-value=3.7e-09 Score=107.71 Aligned_cols=89 Identities=28% Similarity=0.406 Sum_probs=70.2
Q ss_pred CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC-------------CCCChhhh
Q 004834 308 NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-------------QPIPPPLL 374 (728)
Q Consensus 308 ~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~-------------~~l~~~Ll 374 (728)
++|+||||++.+.-.+ +.-|.+.|+.. .+. ++|+++|++ ..+|+.|+
T Consensus 297 PGVLFIDEVhMLDiEc----FTyL~kalES~---------------iaP-ivifAsNrG~~~irGt~d~~sPhGip~dll 356 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIEC----FTYLHKALESP---------------IAP-IVIFASNRGMCTIRGTEDILSPHGIPPDLL 356 (456)
T ss_pred CcceEeeehhhhhhHH----HHHHHHHhcCC---------------CCc-eEEEecCCcceeecCCcCCCCCCCCCHHHh
Confidence 4499999999987776 77888888731 122 456677764 47999999
Q ss_pred CCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHH
Q 004834 375 DRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQR 426 (728)
Q Consensus 375 ~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~ 426 (728)
+|+-+|..-.|++++.++|++... ..+++.++++++..++.-
T Consensus 357 DRl~Iirt~~y~~~e~r~Ii~~Ra----------~~E~l~~~e~a~~~l~~~ 398 (456)
T KOG1942|consen 357 DRLLIIRTLPYDEEEIRQIIKIRA----------QVEGLQVEEEALDLLAEI 398 (456)
T ss_pred hheeEEeeccCCHHHHHHHHHHHH----------hhhcceecHHHHHHHHhh
Confidence 999999999999999999998762 234588999999999873
No 226
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.99 E-value=1.3e-09 Score=122.92 Aligned_cols=158 Identities=25% Similarity=0.290 Sum_probs=97.2
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCe--EEEecCCccchhhhccC-----c
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKF--IRISLGGVKDEADIRGH-----R 286 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~--~~i~~~~~~~~s~l~g~-----~ 286 (728)
+++|+..+++.+.-.+ ..+.+++|+||||+|||++++.++..+...- ..+..+..++.+..... .
T Consensus 192 ~v~Gq~~~~~al~laa--------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~ 263 (506)
T PRK09862 192 DVIGQEQGKRGLEITA--------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQ 263 (506)
T ss_pred EEECcHHHHhhhheec--------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCC
Confidence 6789887776643322 4578999999999999999999999885332 22333333322211110 0
Q ss_pred cc------------cccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeee-c
Q 004834 287 RT------------YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPF-D 353 (728)
Q Consensus 287 ~~------------yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~-d 353 (728)
+. .+|.....-...+..+ .++++||||++.+.+.. ++.|++.|+.++.. ....+... -
T Consensus 264 rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A--~gGvLfLDEi~e~~~~~----~~~L~~~LE~g~v~---I~r~g~~~~~ 334 (506)
T PRK09862 264 RPFRSPHHSASLTAMVGGGAIPGPGEISLA--HNGVLFLDELPEFERRT----LDALREPIESGQIH---LSRTRAKITY 334 (506)
T ss_pred CCccCCCccchHHHHhCCCceehhhHhhhc--cCCEEecCCchhCCHHH----HHHHHHHHHcCcEE---EecCCcceec
Confidence 11 1221100000122222 35799999999988766 89999999865431 11111111 1
Q ss_pred CCCcEEEEecCCCC---------------------CCChhhhCCee-EEEcCCCCHH
Q 004834 354 LSKVIFVATANRAQ---------------------PIPPPLLDRME-VIELPGYTPE 388 (728)
Q Consensus 354 ~~~vi~I~TtN~~~---------------------~l~~~Ll~R~~-vI~~~~~t~e 388 (728)
..++.+|+|+|... .++.+++|||+ .+.+++++.+
T Consensus 335 pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 335 PARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred cCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 24578999999852 48889999999 4888887544
No 227
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.99 E-value=3.9e-09 Score=125.44 Aligned_cols=149 Identities=29% Similarity=0.475 Sum_probs=113.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCcccc-----ccCCcchHHHHHhhcCCCCcEEEEe
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTY-----IGSMPGRLIDGLKRVGVCNPVMLLD 314 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~y-----vG~~~g~l~~~~~~a~~~~~VlllD 314 (728)
++.++|-|.||+|||+|..++|+..|...+||++++.++.-++.|+.-.. ...+...+..+++. ...++||
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~----G~WVlLD 1618 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD----GGWVLLD 1618 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc----CCEEEee
Confidence 45689999999999999999999999999999999999999988875221 11122345555554 4599999
Q ss_pred cccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCC-CcEEEEecCCCC------CCChhhhCCeeEEEcCCCCH
Q 004834 315 EIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS-KVIFVATANRAQ------PIPPPLLDRMEVIELPGYTP 387 (728)
Q Consensus 315 Eidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~-~vi~I~TtN~~~------~l~~~Ll~R~~vI~~~~~t~ 387 (728)
|+.-++.++ ..-|-..||.+. ..|.. -+...++.. |+.+++|-|+-+ .+|..+++||.+|.+..++.
T Consensus 1619 EiNLaSQSV----lEGLNacLDhR~-eayIP-Eld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsvV~~d~lt~ 1692 (4600)
T COG5271 1619 EINLASQSV----LEGLNACLDHRR-EAYIP-ELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKMDGLTT 1692 (4600)
T ss_pred hhhhhHHHH----HHHHHHHHhhcc-ccccc-cccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhheEEeccccc
Confidence 999987766 666777777432 22222 224456554 567778888754 79999999999999999999
Q ss_pred HHHHHHHHHhh
Q 004834 388 EEKLRIAMRHL 398 (728)
Q Consensus 388 ee~~~Il~~~l 398 (728)
+...+|+.+..
T Consensus 1693 dDi~~Ia~~~y 1703 (4600)
T COG5271 1693 DDITHIANKMY 1703 (4600)
T ss_pred chHHHHHHhhC
Confidence 99999998753
No 228
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=5.5e-09 Score=111.83 Aligned_cols=139 Identities=14% Similarity=0.176 Sum_probs=92.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeE-EEecCCccchhhh--ccCcccc-c-----cCCc--chHHH---HHhhc
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFI-RISLGGVKDEADI--RGHRRTY-I-----GSMP--GRLID---GLKRV 304 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~-~i~~~~~~~~s~l--~g~~~~y-v-----G~~~--g~l~~---~~~~a 304 (728)
-++.+||.||.|+||+++|+.+|+.+-+.-. .-.|+.-.+-..+ -.|+.-+ + |..- ..+.+ .+...
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~ 103 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQES 103 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhC
Confidence 3457999999999999999999999843211 0112111000000 0111100 1 1100 22332 22222
Q ss_pred CCCC--cEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEc
Q 004834 305 GVCN--PVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIEL 382 (728)
Q Consensus 305 ~~~~--~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~ 382 (728)
+..+ .|++||++|++.... +|+||..|++- ..+++||.+|+.++.+.|.++|||..+.|
T Consensus 104 ~~~~~~kV~iI~~ae~m~~~A----aNaLLKtLEEP---------------p~~t~fiL~t~~~~~lLpTI~SRCq~~~~ 164 (319)
T PRK06090 104 SQLNGYRLFVIEPADAMNESA----SNALLKTLEEP---------------APNCLFLLVTHNQKRLLPTIVSRCQQWVV 164 (319)
T ss_pred cccCCceEEEecchhhhCHHH----HHHHHHHhcCC---------------CCCeEEEEEECChhhChHHHHhcceeEeC
Confidence 3222 399999999998766 89999999863 35679999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH
Q 004834 383 PGYTPEEKLRIAMR 396 (728)
Q Consensus 383 ~~~t~ee~~~Il~~ 396 (728)
++++.++..+.+..
T Consensus 165 ~~~~~~~~~~~L~~ 178 (319)
T PRK06090 165 TPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999888776654
No 229
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=6.7e-09 Score=116.76 Aligned_cols=198 Identities=17% Similarity=0.205 Sum_probs=120.4
Q ss_pred ccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCC----eEEEecCCccchhhhccCccccc
Q 004834 215 HYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK----FIRISLGGVKDEADIRGHRRTYI 290 (728)
Q Consensus 215 i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~----~~~i~~~~~~~~s~l~g~~~~yv 290 (728)
++-...+++...+. .+.|-...++++|.||+|+|||.|+++++..+..+ +..++|+..+. .. .
T Consensus 410 ~i~~~s~kke~~n~----~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~------~~---~ 476 (952)
T KOG0735|consen 410 FIQVPSYKKENANQ----ELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDG------SS---L 476 (952)
T ss_pred eeecchhhhhhhhh----hcccccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccc------hh---H
Confidence 34444445444442 23334566789999999999999999999998643 34555554322 11 1
Q ss_pred cCCcchHHHHHhhcCCC-CcEEEEecccccCCCC--CCCH-------HHHHH-HhcCcccccccccCCCCeeecCCCcEE
Q 004834 291 GSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDV--RGDP-------ASALL-EVLDPEQNKTFNDHYLNVPFDLSKVIF 359 (728)
Q Consensus 291 G~~~g~l~~~~~~a~~~-~~VlllDEidkl~~~~--~~~~-------~~~Ll-~~Ld~~~~~~~~d~~~~~~~d~~~vi~ 359 (728)
......+...|..+-.. ++|++||.+|.+.... .+.+ .+.++ ++++. |.. +-+.+.|
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~-----y~~-------~~~~ia~ 544 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKI-----YLK-------RNRKIAV 544 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHH-----HHc-------cCcEEEE
Confidence 11112333444443322 3499999999987621 1111 12222 44432 111 1234689
Q ss_pred EEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHH
Q 004834 360 VATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 436 (728)
Q Consensus 360 I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L 436 (728)
|+|.+....++|-|.+ +|+ ++.+++|...+|.+|++..+.+.. ..+....++.++..+ ..+-+++|
T Consensus 545 Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~----------~~~~~~dLd~ls~~T-EGy~~~DL 613 (952)
T KOG0735|consen 545 IATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL----------SDITMDDLDFLSVKT-EGYLATDL 613 (952)
T ss_pred EEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhh----------hhhhhHHHHHHHHhc-CCccchhH
Confidence 9999999999999887 677 799999999999999998864332 233444455555443 33556666
Q ss_pred HHHHHHHHHHHH
Q 004834 437 ERNLAALARAAA 448 (728)
Q Consensus 437 ~~~I~~l~r~a~ 448 (728)
.-.+++++..|.
T Consensus 614 ~ifVeRai~~a~ 625 (952)
T KOG0735|consen 614 VIFVERAIHEAF 625 (952)
T ss_pred HHHHHHHHHHHH
Confidence 666666665444
No 230
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.97 E-value=6.6e-09 Score=117.39 Aligned_cols=163 Identities=17% Similarity=0.244 Sum_probs=108.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhc-----CCCCcEEE
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRV-----GVCNPVML 312 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a-----~~~~~Vll 312 (728)
++.+++||+||||-||||||..+|+..|...+.|+.+..++.+.+. .++..++... ...+..++
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~-----------~kI~~avq~~s~l~adsrP~CLV 392 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVK-----------EKIENAVQNHSVLDADSRPVCLV 392 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHH-----------HHHHHHHhhccccccCCCcceEE
Confidence 3445899999999999999999999999999999998876654432 2344444332 23333899
Q ss_pred EecccccCCCCCCCHHHHHHHhcCcccccccccCC--CC-----eeecCCCcEEEEecCCCCCCChhhhC-C--eeEEEc
Q 004834 313 LDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHY--LN-----VPFDLSKVIFVATANRAQPIPPPLLD-R--MEVIEL 382 (728)
Q Consensus 313 lDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~--~~-----~~~d~~~vi~I~TtN~~~~l~~~Ll~-R--~~vI~~ 382 (728)
+||||-..+.. .+.++.++............ .+ +.--+. --|||.||.... |+|+. | +.+|.|
T Consensus 393 iDEIDGa~~~~----Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~-RPIICICNdLYa--PaLR~Lr~~A~ii~f 465 (877)
T KOG1969|consen 393 IDEIDGAPRAA----VDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLT-RPIICICNDLYA--PALRPLRPFAEIIAF 465 (877)
T ss_pred EecccCCcHHH----HHHHHHHHHhhcchhhcCcccchhhhhhhcccccc-CCEEEEecCccc--hhhhhcccceEEEEe
Confidence 99999987544 77888887622111110000 00 000011 136788887764 66664 3 358999
Q ss_pred CCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcc
Q 004834 383 PGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT 428 (728)
Q Consensus 383 ~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~ 428 (728)
.+++.....+-++.. +.++++.++..++..|++.|.
T Consensus 466 ~~p~~s~Lv~RL~~I----------C~rE~mr~d~~aL~~L~el~~ 501 (877)
T KOG1969|consen 466 VPPSQSRLVERLNEI----------CHRENMRADSKALNALCELTQ 501 (877)
T ss_pred cCCChhHHHHHHHHH----------HhhhcCCCCHHHHHHHHHHhc
Confidence 999988777555443 234567899999999999765
No 231
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.95 E-value=1.1e-08 Score=118.55 Aligned_cols=223 Identities=16% Similarity=0.199 Sum_probs=117.6
Q ss_pred CCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 191 LPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 191 iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
.||.....+..++ +++|+++.++.+..++..... +..++..++|+||||||||++++.+|+.++..+..
T Consensus 72 ~pW~eKyrP~~ld----------el~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 72 EPWVEKYKPETQH----------ELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred CchHHHhCCCCHH----------HhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 4676555553332 688999988888887754332 23455679999999999999999999999765433
Q ss_pred -EecCC---ccchhhh-ccCcccccc--CCcchHHHHHhhcC-----------CCCcEEEEecccccCCCCCCCHHHHHH
Q 004834 271 -ISLGG---VKDEADI-RGHRRTYIG--SMPGRLIDGLKRVG-----------VCNPVMLLDEIDKTGSDVRGDPASALL 332 (728)
Q Consensus 271 -i~~~~---~~~~s~l-~g~~~~yvG--~~~g~l~~~~~~a~-----------~~~~VlllDEidkl~~~~~~~~~~~Ll 332 (728)
++... ..+.... ......+.. .....+...+..+. ....||||||++.+.... ...+.
T Consensus 141 w~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~----~~~lq 216 (637)
T TIGR00602 141 WSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD----TRALH 216 (637)
T ss_pred HhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh----HHHHH
Confidence 11110 0000000 000000000 00111112222111 123499999999876432 22333
Q ss_pred HhcC-cccccccccCCCCeeecCCCcEEEEecCCC------C-C------CChhhhC--CeeEEEcCCCCHHHHHHHHHH
Q 004834 333 EVLD-PEQNKTFNDHYLNVPFDLSKVIFVATANRA------Q-P------IPPPLLD--RMEVIELPGYTPEEKLRIAMR 396 (728)
Q Consensus 333 ~~Ld-~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~------~-~------l~~~Ll~--R~~vI~~~~~t~ee~~~Il~~ 396 (728)
.+|. .. ... + .-.+++|.|-|.. + . +.+++++ |+.+|.|++++.....+.+++
T Consensus 217 ~lLr~~~-----~e~--~----~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~r 285 (637)
T TIGR00602 217 EILRWKY-----VSI--G----RCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNR 285 (637)
T ss_pred HHHHHHh-----hcC--C----CceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHH
Confidence 3332 10 000 0 0112343342322 1 1 3488987 667899999999998888887
Q ss_pred hhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHH
Q 004834 397 HLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 397 ~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
.+..+... ........+++++..|+.... ..+|..-..++-.|
T Consensus 286 Il~~E~~~---~~~~~~~p~~~~l~~I~~~s~--GDiRsAIn~LQf~~ 328 (637)
T TIGR00602 286 IVTIEAKK---NGEKIKVPKKTSVELLCQGCS--GDIRSAINSLQFSS 328 (637)
T ss_pred HHHhhhhc---cccccccCCHHHHHHHHHhCC--ChHHHHHHHHHHHH
Confidence 76432111 111112236788888887433 34454444444433
No 232
>PRK08181 transposase; Validated
Probab=98.94 E-value=4.9e-09 Score=109.85 Aligned_cols=125 Identities=22% Similarity=0.333 Sum_probs=73.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccc-hhhhccCccccccCCcchHHHHHhhcCCCCcEEEEeccc
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKD-EADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEID 317 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~-~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEid 317 (728)
.+.+++|+||||||||+||.++|..+......+.+....+ ...+... ...+...+.+.... ..++|+|||++
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a------~~~~~~~~~l~~l~-~~dLLIIDDlg 177 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVA------RRELQLESAIAKLD-KFDLLILDDLA 177 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHH------HhCCcHHHHHHHHh-cCCEEEEeccc
Confidence 4568999999999999999999987743332222221111 1111110 11122223333222 24699999999
Q ss_pred ccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC----------CCChhhhCCe----eEEEcC
Q 004834 318 KTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ----------PIPPPLLDRM----EVIELP 383 (728)
Q Consensus 318 kl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~----------~l~~~Ll~R~----~vI~~~ 383 (728)
....+. .....|+++++..+.. .-+|.|||.+. .+..+++||+ .+|.|.
T Consensus 178 ~~~~~~--~~~~~Lf~lin~R~~~---------------~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~ 240 (269)
T PRK08181 178 YVTKDQ--AETSVLFELISARYER---------------RSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMN 240 (269)
T ss_pred cccCCH--HHHHHHHHHHHHHHhC---------------CCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecC
Confidence 876543 2367899999854321 12567888753 2334556665 478888
Q ss_pred CCCH
Q 004834 384 GYTP 387 (728)
Q Consensus 384 ~~t~ 387 (728)
+.+.
T Consensus 241 g~s~ 244 (269)
T PRK08181 241 VESY 244 (269)
T ss_pred Cccc
Confidence 8654
No 233
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.94 E-value=8.3e-09 Score=114.88 Aligned_cols=210 Identities=20% Similarity=0.238 Sum_probs=128.1
Q ss_pred HHHHHhhhccccchHHHHHHHHHHHHhhccC--C----CCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccc
Q 004834 205 KAAKERLDSDHYGLVRVKQRIIEYLAVRKLK--P----DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKD 278 (728)
Q Consensus 205 ~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~--~----~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~ 278 (728)
..+-..|...+||.+.+|.-|.-.+-..-.+ . -+.-.++|++|.||+|||.+.++.+..+.+..+. ++...+
T Consensus 337 ~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt--sGkaSS 414 (764)
T KOG0480|consen 337 KNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT--SGKASS 414 (764)
T ss_pred HHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe--cCcccc
Confidence 3445566778999999999887766432111 1 1223489999999999999999999998765442 111122
Q ss_pred hhhhccCccccccCCc-c-hHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCC-
Q 004834 279 EADIRGHRRTYIGSMP-G-RLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS- 355 (728)
Q Consensus 279 ~s~l~g~~~~yvG~~~-g-~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~- 355 (728)
.+.+-. ..+-..+ | -..++=...-..++|-.|||+||+.-+. +.++++.|+.. +......|+...+.
T Consensus 415 aAGLTa---aVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~d----qvAihEAMEQQ---tISIaKAGv~aTLnA 484 (764)
T KOG0480|consen 415 AAGLTA---AVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKD----QVAIHEAMEQQ---TISIAKAGVVATLNA 484 (764)
T ss_pred cccceE---EEEecCCCCceeeecCcEEEccCceEEechhcccChHh----HHHHHHHHHhh---eehheecceEEeecc
Confidence 111110 0000000 0 0111100111246799999999997654 89999999842 23333334443332
Q ss_pred CcEEEEecCCCC-------------CCChhhhCCee--EEEcCCCCHHHHHHHHHHhhc--------------------h
Q 004834 356 KVIFVATANRAQ-------------PIPPPLLDRME--VIELPGYTPEEKLRIAMRHLI--------------------P 400 (728)
Q Consensus 356 ~vi~I~TtN~~~-------------~l~~~Ll~R~~--vI~~~~~t~ee~~~Il~~~l~--------------------~ 400 (728)
.+-+++++|+.. .+++|+++||| +|-++.+++..-..|..+.+. .
T Consensus 485 RtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vr 564 (764)
T KOG0480|consen 485 RTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVR 564 (764)
T ss_pred hhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHH
Confidence 356788999864 78999999998 477888888766666655431 1
Q ss_pred HHHhhcCCCccccccCHHHHHHHHHHcc
Q 004834 401 RVLDQHGLGSEFLQIPEAMVKLVIQRYT 428 (728)
Q Consensus 401 ~~~~~~~~~~~~~~i~d~~l~~l~~~~~ 428 (728)
+.+.... ...+.++.++-+.+.+.|-
T Consensus 565 kYi~yAR--~~~P~ls~ea~~~lve~Y~ 590 (764)
T KOG0480|consen 565 KYIRYAR--NFKPKLSKEASEMLVEKYK 590 (764)
T ss_pred HHHHHHH--hcCccccHHHHHHHHHHHH
Confidence 1111111 3456788888888887664
No 234
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.93 E-value=5.1e-09 Score=110.26 Aligned_cols=199 Identities=23% Similarity=0.358 Sum_probs=113.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCC---eEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecc
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRK---FIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEI 316 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~---~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEi 316 (728)
+..+||+||+|||||++++..-..+... ...+.++...+...+...-....-...|. .+.-.....-|+|+|++
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~---~~gP~~~k~lv~fiDDl 109 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGR---VYGPPGGKKLVLFIDDL 109 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTE---EEEEESSSEEEEEEETT
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCC---CCCCCCCcEEEEEeccc
Confidence 4579999999999999998876655433 23566766554443322111111000011 01111112239999999
Q ss_pred cccCCCCCCC--HHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC---CCChhhhCCeeEEEcCCCCHHHHH
Q 004834 317 DKTGSDVRGD--PASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ---PIPPPLLDRMEVIELPGYTPEEKL 391 (728)
Q Consensus 317 dkl~~~~~~~--~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~---~l~~~Ll~R~~vI~~~~~t~ee~~ 391 (728)
+...++.-|. +.+.|.|++|. .+|.|..........++.||+++|+.. .++++|+++|.++.++.|+.+...
T Consensus 110 N~p~~d~ygtq~~iElLRQ~i~~---~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~~~~p~~~sl~ 186 (272)
T PF12775_consen 110 NMPQPDKYGTQPPIELLRQLIDY---GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILNIPYPSDESLN 186 (272)
T ss_dssp T-S---TTS--HHHHHHHHHHHC---SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE----TCCHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHh---cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEEecCCChHHHH
Confidence 9888776443 35777788874 356554322345677889999998754 589999999999999999999999
Q ss_pred HHHHHhhchHHHhhcCCCccccccCHHHHHHHH-------HHccc-------ccchHHHHHHHHHHHH
Q 004834 392 RIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVI-------QRYTR-------EAGVRNLERNLAALAR 445 (728)
Q Consensus 392 ~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~-------~~~~~-------~~G~R~L~~~I~~l~r 445 (728)
.|....+.. .++..+....-..+.+..+...+ ..+.. -...|+|-+.++.+++
T Consensus 187 ~If~~il~~-~l~~~~f~~~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlRDlsrv~qGil~ 253 (272)
T PF12775_consen 187 TIFSSILQS-HLKNGGFPEDVQKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLRDLSRVFQGILL 253 (272)
T ss_dssp HHHHHHHHH-HTCHTTSSGGGCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh-hcccCCCChHHHHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHHHHHHHHHHHHh
Confidence 998877632 22222222111123333333333 22221 3568888888888875
No 235
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.92 E-value=1.7e-08 Score=105.65 Aligned_cols=185 Identities=19% Similarity=0.297 Sum_probs=131.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccc---hhhhccCccccccCCcchHHHHHhhcCCCCcEEEEec
Q 004834 242 VLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKD---EADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 315 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~---~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDE 315 (728)
.+|+.|.+||||-.+|++-.... ..||.-++|.+.-+ .+++.|+.++--|. .| .|..+ +.+-+|+||
T Consensus 229 PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk-~G----ffE~A--ngGTVlLDe 301 (511)
T COG3283 229 PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGK-KG----FFEQA--NGGTVLLDE 301 (511)
T ss_pred CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCc-cc----hhhhc--cCCeEEeeh
Confidence 48999999999999999877666 35899999998744 78899988763222 22 23333 246999999
Q ss_pred ccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC-------CCCChhhhCCeeEEEcCCCCHH
Q 004834 316 IDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-------QPIPPPLLDRMEVIELPGYTPE 388 (728)
Q Consensus 316 idkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~-------~~l~~~Ll~R~~vI~~~~~t~e 388 (728)
|..+++.. +..||..|.++..++..... ++-+ +|-+||||... ..|...|..|+.++.+.-|...
T Consensus 302 IgEmSp~l----QaKLLRFL~DGtFRRVGee~-Ev~v---dVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLR 373 (511)
T COG3283 302 IGEMSPRL----QAKLLRFLNDGTFRRVGEDH-EVHV---DVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLR 373 (511)
T ss_pred hhhcCHHH----HHHHHHHhcCCceeecCCcc-eEEE---EEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccc
Confidence 99999987 89999999887665543322 2223 45688988764 3788889999986444444443
Q ss_pred HHH---HHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHH
Q 004834 389 EKL---RIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 389 e~~---~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
++. .-+..++..+...+.|+. ..+++++.+.++. .|.|..++|+|++.|-+.|
T Consensus 374 er~~di~pL~e~Fv~q~s~elg~p--~pkl~~~~~~~L~-~y~WpGNVRqL~N~iyRA~ 429 (511)
T COG3283 374 ERPQDIMPLAELFVQQFSDELGVP--RPKLAADLLTVLT-RYAWPGNVRQLKNAIYRAL 429 (511)
T ss_pred cCcccchHHHHHHHHHHHHHhCCC--CCccCHHHHHHHH-HcCCCccHHHHHHHHHHHH
Confidence 332 223344455666666654 4788999998885 4888899999988876665
No 236
>PRK06526 transposase; Provisional
Probab=98.92 E-value=3.3e-09 Score=110.47 Aligned_cols=127 Identities=24% Similarity=0.421 Sum_probs=73.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccc-hhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKD-EADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEI 316 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~-~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEi 316 (728)
..+.+++|+||||||||+||.+|+..+-....++.+....+ ..++... ...+.+...+.... ..++++|||+
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~------~~~~~~~~~l~~l~-~~dlLIIDD~ 168 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAA------HHAGRLQAELVKLG-RYPLLIVDEV 168 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHH------HhcCcHHHHHHHhc-cCCEEEEccc
Confidence 35678999999999999999999988743333333322111 1111110 11123333333322 2469999999
Q ss_pred cccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC-----CC-----ChhhhCCe----eEEEc
Q 004834 317 DKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-----PI-----PPPLLDRM----EVIEL 382 (728)
Q Consensus 317 dkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~-----~l-----~~~Ll~R~----~vI~~ 382 (728)
+....+. ...+.|+++++..+.. ..+|.|||.+. .+ -.+++||+ .+|.|
T Consensus 169 g~~~~~~--~~~~~L~~li~~r~~~---------------~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~ 231 (254)
T PRK06526 169 GYIPFEP--EAANLFFQLVSSRYER---------------ASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISL 231 (254)
T ss_pred ccCCCCH--HHHHHHHHHHHHHHhc---------------CCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEee
Confidence 9876432 2256788988754321 13567888763 22 22445555 47888
Q ss_pred CCCCHH
Q 004834 383 PGYTPE 388 (728)
Q Consensus 383 ~~~t~e 388 (728)
.+.+..
T Consensus 232 ~g~s~R 237 (254)
T PRK06526 232 KGDSYR 237 (254)
T ss_pred cCCCcc
Confidence 886654
No 237
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.88 E-value=5.4e-08 Score=116.20 Aligned_cols=219 Identities=21% Similarity=0.276 Sum_probs=155.4
Q ss_pred HHhcCCCCCCCchhHHHHHHHHcCCCCccchhHHhcHHHHHHhhhccccch-HHHHHHHHHHHHhhccCCCCCCCEEEEE
Q 004834 168 LKKMQPQQPGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGL-VRVKQRIIEYLAVRKLKPDARGPVLCFV 246 (728)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~l~~~~~~L~~~i~G~-~~vk~~i~~~l~~~~~~~~~~~~~lLL~ 246 (728)
+.+..|.+|+..-+.-...|+.+-|.....+. ||=. .-+-+.....+.... .+.-.+|+-
T Consensus 834 i~kq~p~~p~~~yi~f~hyw~~~g~~~veeq~---------------hyIiTPfVqkn~ln~~Ra~s----~~~fP~LiQ 894 (4600)
T COG5271 834 IEKQKPKVPDHSYIAFCHYWKHGGSFPVEEQE---------------HYIITPFVQKNYLNTMRAAS----LSNFPLLIQ 894 (4600)
T ss_pred hhhcCCCCCCccHHHHHHHHHhcCCCchhhcc---------------eeEecHHHHHHHHHHHHHHh----hcCCcEEEe
Confidence 44556667777656555667766554432222 1111 111122232222221 223358999
Q ss_pred cCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCc----cccccCCcchHHHHHhhcCCCCcEEEEecccccCCC
Q 004834 247 GPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR----RTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSD 322 (728)
Q Consensus 247 GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~----~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~ 322 (728)
||+-+|||++...+|+..|..|+||+-.+.++..+.+|.. .+-....+|.+.+++|+ .-.++|||..-++.+
T Consensus 895 GpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~----GyWIVLDELNLApTD 970 (4600)
T COG5271 895 GPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRR----GYWIVLDELNLAPTD 970 (4600)
T ss_pred cCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhc----CcEEEeeccccCcHH
Confidence 9999999999999999999999999999888888888743 12233455788999986 348999999999888
Q ss_pred CCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC------CCChhhhCCeeEEEcCCCCHHHHHHHHHH
Q 004834 323 VRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ------PIPPPLLDRMEVIELPGYTPEEKLRIAMR 396 (728)
Q Consensus 323 ~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~------~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~ 396 (728)
+ ..+|-.+||..+ .-|......+.+.-.++.+++|.|+|. .+..|+++||--++|....++|...|++.
T Consensus 971 V----LEaLNRLLDDNR-elfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddipedEle~ILh~ 1045 (4600)
T COG5271 971 V----LEALNRLLDDNR-ELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPEDELEEILHG 1045 (4600)
T ss_pred H----HHHHHHhhcccc-ceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhhcccCcHHHHHHHHhc
Confidence 7 999999999754 345565656666667788899999885 68899999999899999999999999876
Q ss_pred hhchHHHhhcCCCccccccCHHHHHHHHHHccc
Q 004834 397 HLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 429 (728)
Q Consensus 397 ~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~ 429 (728)
. -.+.+.....+++-|.+
T Consensus 1046 r---------------c~iapSyakKiVeVyr~ 1063 (4600)
T COG5271 1046 R---------------CEIAPSYAKKIVEVYRG 1063 (4600)
T ss_pred c---------------CccCHHHHHHHHHHHHH
Confidence 5 24566666667766654
No 238
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.87 E-value=7.2e-09 Score=95.98 Aligned_cols=133 Identities=29% Similarity=0.293 Sum_probs=71.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCC---eEEEecCCccchhhhc-----cCccccccCCcchHHHHHhhcCCCC-cE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRK---FIRISLGGVKDEADIR-----GHRRTYIGSMPGRLIDGLKRVGVCN-PV 310 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~---~~~i~~~~~~~~s~l~-----g~~~~yvG~~~g~l~~~~~~a~~~~-~V 310 (728)
+.+++|+||||||||++++.+|..+... .+.++.+......... .................+..+.... .+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 5689999999999999999999999775 5666555432211110 0000111111122333344444333 69
Q ss_pred EEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCC-CCCCChhhhCCee-EEEcC
Q 004834 311 MLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR-AQPIPPPLLDRME-VIELP 383 (728)
Q Consensus 311 lllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~-~~~l~~~Ll~R~~-vI~~~ 383 (728)
+++||++.+.... ............ .. .......+..+|+++|. ....+..+..|++ .+.+.
T Consensus 82 iiiDei~~~~~~~----~~~~~~~~~~~~-~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (148)
T smart00382 82 LILDEITSLLDAE----QEALLLLLEELR-LL------LLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLL 145 (148)
T ss_pred EEEECCcccCCHH----HHHHHHhhhhhH-HH------HHHHhcCCCEEEEEeCCCccCchhhhhhccceEEEec
Confidence 9999999997654 222222100000 00 00011345678889886 3344555555665 44443
No 239
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.85 E-value=2e-08 Score=113.48 Aligned_cols=192 Identities=18% Similarity=0.309 Sum_probs=123.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCccc---hhhhccCcccc-ccCCcchHHHHHhhcCCCCcE
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKD---EADIRGHRRTY-IGSMPGRLIDGLKRVGVCNPV 310 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~~---~s~l~g~~~~y-vG~~~g~l~~~~~~a~~~~~V 310 (728)
.....++++|.+||||+++|+++..... .+|+.++|+.... .+.+.|+..+. .|.... ....+..+ .+++
T Consensus 160 ~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~-~~g~~~~a--~~gt 236 (441)
T PRK10365 160 PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKR-REGRFVEA--DGGT 236 (441)
T ss_pred CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcC-CCCceeEC--CCCE
Confidence 3445788999999999999999987763 6899999987543 23445544321 111110 00112222 3579
Q ss_pred EEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC-------CCCChhhhCCee--EEE
Q 004834 311 MLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-------QPIPPPLLDRME--VIE 381 (728)
Q Consensus 311 lllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~-------~~l~~~Ll~R~~--vI~ 381 (728)
+|||||+.+++.. +..|++.++........+. ...++ ++.+|+||+.. ..+.+.|..|+. .|.
T Consensus 237 l~ldei~~l~~~~----q~~l~~~l~~~~~~~~~~~-~~~~~---~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~ 308 (441)
T PRK10365 237 LFLDEIGDISPMM----QVRLLRAIQEREVQRVGSN-QTISV---DVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIE 308 (441)
T ss_pred EEEeccccCCHHH----HHHHHHHHccCcEEeCCCC-ceeee---ceEEEEeCCCCHHHHHHcCCchHHHHHHhccceec
Confidence 9999999999877 8999999986543222211 12222 34567766654 358888888886 366
Q ss_pred cCCCCH--HHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHH
Q 004834 382 LPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 382 ~~~~t~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
+|++.. ++...++..++. +...+++ +....++++++..|.. |.+..++|.|++.|+..+
T Consensus 309 ~ppLreR~~Di~~l~~~~l~-~~~~~~~--~~~~~~~~~a~~~L~~-~~wpgN~reL~~~~~~~~ 369 (441)
T PRK10365 309 VPSLRQRREDIPLLAGHFLQ-RFAERNR--KAVKGFTPQAMDLLIH-YDWPGNIRELENAVERAV 369 (441)
T ss_pred CCChhhcchhHHHHHHHHHH-HHHHHhC--CCCCCcCHHHHHHHHh-CCCCCHHHHHHHHHHHHH
Confidence 666654 344555555543 3333333 2235689999988865 777888999998887766
No 240
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=7.2e-08 Score=101.47 Aligned_cols=127 Identities=17% Similarity=0.201 Sum_probs=83.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEec----CCcc-chhhhccCcc-ccccCCc-chHHHHHhhcCCCCc--E
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISL----GGVK-DEADIRGHRR-TYIGSMP-GRLIDGLKRVGVCNP--V 310 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~----~~~~-~~s~l~g~~~-~yvG~~~-g~l~~~~~~a~~~~~--V 310 (728)
++.+||+||+|+||+++|.++|+.+-+.-..-.| .+.| |...+..... ..++-.. ..+.+.+...+...+ |
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv 98 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKI 98 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceE
Confidence 4578999999999999999999998542111011 1111 1000100000 0011000 123333333443333 9
Q ss_pred EEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCC
Q 004834 311 MLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGY 385 (728)
Q Consensus 311 lllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~ 385 (728)
++||++|++.... +|+||..|++- ..+++||..|+.++.+.|.++|||..+.|+++
T Consensus 99 ~ii~~ad~mt~~A----aNaLLK~LEEP---------------p~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 99 YIIHEADRMTLDA----ISAFLKVLEDP---------------PQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred EEEechhhcCHHH----HHHHHHHhhcC---------------CCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 9999999998876 99999999852 35679999999999999999999999999875
No 241
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=1.5e-08 Score=109.37 Aligned_cols=139 Identities=24% Similarity=0.287 Sum_probs=88.9
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeE---EEecCCc-----------cchhhhccCc-cccccC-----CcchHH
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFI---RISLGGV-----------KDEADIRGHR-RTYIGS-----MPGRLI 298 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~---~i~~~~~-----------~~~s~l~g~~-~~yvG~-----~~g~l~ 298 (728)
-++.+||+||+|+|||++|+.+|+.+.+.-. ...|+.- .|...+.... ...-|. .-..+.
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 3456999999999999999999999853211 0011110 1110010000 000010 012233
Q ss_pred H---HHhhcCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhh
Q 004834 299 D---GLKRVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPL 373 (728)
Q Consensus 299 ~---~~~~a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~L 373 (728)
+ .+...+.. ..|+++|+++.+.+.. ++.|+..|++.. .++.||.+|+.++.+++.+
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a----~naLLk~LEep~---------------~~~~~Ilvth~~~~ll~ti 160 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNLQA----ANSLLKVLEEPP---------------PQVVFLLVSHAADKVLPTI 160 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCHHH----HHHHHHHHHhCc---------------CCCEEEEEeCChHhChHHH
Confidence 3 23333322 2399999999998876 899999998521 2356788888888999999
Q ss_pred hCCeeEEEcCCCCHHHHHHHHHH
Q 004834 374 LDRMEVIELPGYTPEEKLRIAMR 396 (728)
Q Consensus 374 l~R~~vI~~~~~t~ee~~~Il~~ 396 (728)
.+||..+.|++++.++..+.+..
T Consensus 161 ~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 161 KSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHHhhhhcCCCCCHHHHHHHHHh
Confidence 99999999999999987776654
No 242
>PRK09183 transposase/IS protein; Provisional
Probab=98.79 E-value=4.2e-09 Score=110.22 Aligned_cols=127 Identities=24% Similarity=0.365 Sum_probs=73.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchh-hhccCccccccCCcchHHHHHhhcCCCCcEEEEecc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA-DIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEI 316 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s-~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEi 316 (728)
..+.+++|+||||||||+|+.+++..+......+.+....+.. .+... ...+.+...+.......++++|||+
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a------~~~~~~~~~~~~~~~~~dlLiiDdl 173 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTA------QRQGRYKTTLQRGVMAPRLLIIDEI 173 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHH------HHCCcHHHHHHHHhcCCCEEEEccc
Confidence 4577899999999999999999987763333233221111111 11110 0112233333332223469999999
Q ss_pred cccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC-----CC------ChhhhCCe----eEEE
Q 004834 317 DKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-----PI------PPPLLDRM----EVIE 381 (728)
Q Consensus 317 dkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~-----~l------~~~Ll~R~----~vI~ 381 (728)
+....+. +..+.|+++++..+.. + -+|.|||.+. .+ ..+++||+ .+|.
T Consensus 174 g~~~~~~--~~~~~lf~li~~r~~~--------------~-s~iiTsn~~~~~w~~~~~~d~~~~~ai~dRl~~~~~~i~ 236 (259)
T PRK09183 174 GYLPFSQ--EEANLFFQVIAKRYEK--------------G-SMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQ 236 (259)
T ss_pred ccCCCCh--HHHHHHHHHHHHHHhc--------------C-cEEEecCCCHHHHHHHhcCchhHHHHHHHHHhcceEEEe
Confidence 8865443 2356899999754321 1 2566888753 22 23667765 3688
Q ss_pred cCCCCH
Q 004834 382 LPGYTP 387 (728)
Q Consensus 382 ~~~~t~ 387 (728)
|.+.+.
T Consensus 237 ~~g~s~ 242 (259)
T PRK09183 237 IKGESY 242 (259)
T ss_pred ecCCCC
Confidence 877553
No 243
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.79 E-value=2.5e-07 Score=97.27 Aligned_cols=185 Identities=15% Similarity=0.125 Sum_probs=102.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCC-eEEEec-CCccchh-------hhccCccccccCCc----chHHHHHhh--c
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRK-FIRISL-GGVKDEA-------DIRGHRRTYIGSMP----GRLIDGLKR--V 304 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~-~~~i~~-~~~~~~s-------~l~g~~~~yvG~~~----g~l~~~~~~--a 304 (728)
.+.++|+||||+||||+++.+++.+... .....+ ....+.. ...|.+. .+... ..+.+.+.. .
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~--~~~~~~~~~~~l~~~l~~~~~ 120 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLET--EGRDKAALLRELEDFLIEQFA 120 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999988632 222111 1111111 1122211 11111 122222211 1
Q ss_pred CCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC--CC----CChhhhCCee
Q 004834 305 GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA--QP----IPPPLLDRME 378 (728)
Q Consensus 305 ~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~--~~----l~~~Ll~R~~ 378 (728)
.....|+++||++.+.+.. ...|..+.+-.. +. ...+.|+++.... +. -..++.+|+.
T Consensus 121 ~~~~~vliiDe~~~l~~~~----~~~l~~l~~~~~-----~~-------~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~ 184 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPEL----LEELRMLSNFQT-----DN-------AKLLQIFLVGQPEFRETLQSPQLQQLRQRII 184 (269)
T ss_pred CCCCeEEEEECcccCCHHH----HHHHHHHhCccc-----CC-------CCeEEEEEcCCHHHHHHHcCchhHHHHhhee
Confidence 2223599999999986543 444444333110 00 1223344444321 11 1235677875
Q ss_pred -EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 379 -VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 379 -vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
.+.+++++.++...++...+. ..+. .....+++++++.|.+...+.. +.|..+|..+.......
T Consensus 185 ~~~~l~~l~~~e~~~~l~~~l~-----~~g~-~~~~~~~~~~~~~i~~~s~G~p------~~i~~l~~~~~~~a~~~ 249 (269)
T TIGR03015 185 ASCHLGPLDREETREYIEHRLE-----RAGN-RDAPVFSEGAFDAIHRFSRGIP------RLINILCDRLLLSAFLE 249 (269)
T ss_pred eeeeCCCCCHHHHHHHHHHHHH-----HcCC-CCCCCcCHHHHHHHHHHcCCcc------cHHHHHHHHHHHHHHHc
Confidence 799999999998888877652 2222 1234689999999988655443 45777777665554443
No 244
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.75 E-value=6.9e-08 Score=108.63 Aligned_cols=61 Identities=23% Similarity=0.444 Sum_probs=49.0
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC-CCeEEEec
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG-RKFIRISL 273 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~-~~~~~i~~ 273 (728)
++|||+++++++|.+++.........+++++||+||||+|||+||++||+.+. .+.+.+..
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 47999999999999999443333356778999999999999999999999984 35565543
No 245
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.72 E-value=2.4e-07 Score=95.02 Aligned_cols=112 Identities=24% Similarity=0.333 Sum_probs=78.2
Q ss_pred CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC------------CCCChhhhC
Q 004834 308 NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA------------QPIPPPLLD 375 (728)
Q Consensus 308 ~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~------------~~l~~~Ll~ 375 (728)
++|+|+||++.+.-.+ ++.|...++. |++.+ +|++||++ ..+|-.|++
T Consensus 289 pGVLFIDEvHMLDIEc----FsFlNrAlE~---------------d~~Pi-iimaTNrgit~iRGTn~~SphGiP~D~lD 348 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIEC----FSFLNRALEN---------------DMAPI-IIMATNRGITRIRGTNYRSPHGIPIDLLD 348 (454)
T ss_pred cceEEEeeehhhhhHH----HHHHHHHhhh---------------ccCcE-EEEEcCCceEEeecCCCCCCCCCcHHHhh
Confidence 4489999998887666 6777666663 34444 44566653 479999999
Q ss_pred CeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 376 RMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 376 R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
|+-+|.-.+|+.++..+|++.. +..+.+.+++++++.|..- ..+.+.|.-- .++..+++.+.+.
T Consensus 349 R~lII~t~py~~~d~~~IL~iR----------c~EEdv~m~~~A~d~Lt~i-~~~tsLRYai----~Lit~a~~~~~kr 412 (454)
T KOG2680|consen 349 RMLIISTQPYTEEDIKKILRIR----------CQEEDVEMNPDALDLLTKI-GEATSLRYAI----HLITAASLVCLKR 412 (454)
T ss_pred hhheeecccCcHHHHHHHHHhh----------hhhhccccCHHHHHHHHHh-hhhhhHHHHH----HHHHHHHHHHHHh
Confidence 9999999999999999999887 3345688999999998762 2234444322 2333444444444
No 246
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.72 E-value=1.2e-07 Score=109.56 Aligned_cols=179 Identities=17% Similarity=0.207 Sum_probs=113.7
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCC--CeEEEecCCccchhhhccCc-------cccccCCcchHHHHHhhcCCCCcEE
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGR--KFIRISLGGVKDEADIRGHR-------RTYIGSMPGRLIDGLKRVGVCNPVM 311 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~--~~~~i~~~~~~~~s~l~g~~-------~~yvG~~~g~l~~~~~~a~~~~~Vl 311 (728)
.++++.|++|+|||+++++++..+.. ||..+..+- +...+.|.- .+-....+|.+.. ..++|+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~--t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~------Ah~GvL 97 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGI--ADDRLLGGLDLAATLRAGRPVAQRGLLAE------ADGGVL 97 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCC--cHHHccCCchHHhHhhcCCcCCCCCceee------ccCCEE
Confidence 47999999999999999999999865 776665443 223333321 0000122333322 245699
Q ss_pred EEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecC-CCcEEEEecCCC---CCCChhhhCCee-EEEcCCCC
Q 004834 312 LLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDL-SKVIFVATANRA---QPIPPPLLDRME-VIELPGYT 386 (728)
Q Consensus 312 llDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~-~~vi~I~TtN~~---~~l~~~Ll~R~~-vI~~~~~t 386 (728)
|+||+..+.++. ++.|++.|+.+++..-.+ |..+.+ .++++|+|.|.. ..++++|+|||. .|.+++++
T Consensus 98 ~lDe~n~~~~~~----~~aLleame~G~vtIeR~---G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~ 170 (584)
T PRK13406 98 VLAMAERLEPGT----AARLAAALDTGEVRLERD---GLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLA 170 (584)
T ss_pred EecCcccCCHHH----HHHHHHHHhCCcEEEEEC---CcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCC
Confidence 999999999887 999999999876543222 333332 456888886543 469999999998 59999888
Q ss_pred HHHHHHH--HHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccc---hHHHHHHH
Q 004834 387 PEEKLRI--AMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAG---VRNLERNL 440 (728)
Q Consensus 387 ~ee~~~I--l~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G---~R~L~~~I 440 (728)
..+...- ....+. ...+. + .++.++++.+.++++.+.. .| .|..-..+
T Consensus 171 ~~~~~~~~~~~~~I~-~AR~r--l--~~v~v~~~~l~~i~~~~~~-~gv~S~Ra~i~ll 223 (584)
T PRK13406 171 LRDAREIPIDADDIA-AARAR--L--PAVGPPPEAIAALCAAAAA-LGIASLRAPLLAL 223 (584)
T ss_pred hHHhcccCCCHHHHH-HHHHH--H--ccCCCCHHHHHHHHHHHHH-hCCCCcCHHHHHH
Confidence 7654320 000011 01111 1 2578999999999875543 34 35543333
No 247
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=5.8e-08 Score=102.47 Aligned_cols=152 Identities=17% Similarity=0.244 Sum_probs=96.1
Q ss_pred chHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE--EEecCCccchhhh--ccCccc-cc-
Q 004834 217 GLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI--RISLGGVKDEADI--RGHRRT-YI- 290 (728)
Q Consensus 217 G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~--~i~~~~~~~~s~l--~g~~~~-yv- 290 (728)
+|..+++.+...+... .-++.+||+|| +||+++|+.+|+.+.+.-. .-.|+.-.+-..+ ..||.- ++
T Consensus 6 ~q~~~~~~L~~~~~~~-----rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~ 78 (290)
T PRK07276 6 KQPKVFQRFQTILEQD-----RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIE 78 (290)
T ss_pred HHHHHHHHHHHHHHcC-----CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeec
Confidence 3566667776666533 33567999996 6899999999998843221 0111111110000 011211 11
Q ss_pred --cCC--cchHHH---HHhhcCCCC--cEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEE
Q 004834 291 --GSM--PGRLID---GLKRVGVCN--PVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVA 361 (728)
Q Consensus 291 --G~~--~g~l~~---~~~~a~~~~--~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~ 361 (728)
|.. -..+.+ .+...+... .|++||++|++.... +|+||..|++- ..+++||.
T Consensus 79 p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~A----aNaLLKtLEEP---------------p~~t~~iL 139 (290)
T PRK07276 79 PQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNA----ANSLLKVIEEP---------------QSEIYIFL 139 (290)
T ss_pred CCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHH----HHHHHHHhcCC---------------CCCeEEEE
Confidence 111 123333 333333322 299999999998776 89999999863 34578999
Q ss_pred ecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHH
Q 004834 362 TANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAM 395 (728)
Q Consensus 362 TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~ 395 (728)
+|+.++.+.|.++|||..|.|+. +.++..+++.
T Consensus 140 ~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 140 LTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred EECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 99999999999999999999977 6666555554
No 248
>PRK08116 hypothetical protein; Validated
Probab=98.69 E-value=4.2e-08 Score=103.22 Aligned_cols=126 Identities=21% Similarity=0.265 Sum_probs=74.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecc
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEI 316 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEi 316 (728)
+.+++|+||||||||+||.++|+.+ +.+.+.+++....+ .+.. .|-+.......+.+.... ..++|+|||+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~--~i~~---~~~~~~~~~~~~~~~~l~-~~dlLviDDl 187 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLN--RIKS---TYKSSGKEDENEIIRSLV-NADLLILDDL 187 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH--HHHH---HHhccccccHHHHHHHhc-CCCEEEEecc
Confidence 4469999999999999999999987 44454444433211 1111 111111111112222221 2469999999
Q ss_pred cccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC-----CCChhhhCCe----eEEEcCCCCH
Q 004834 317 DKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-----PIPPPLLDRM----EVIELPGYTP 387 (728)
Q Consensus 317 dkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~-----~l~~~Ll~R~----~vI~~~~~t~ 387 (728)
..-.. ....+..|+++++.... .+..+|.|||... .+++++.+|+ ..|.+.+++.
T Consensus 188 g~e~~--t~~~~~~l~~iin~r~~--------------~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 188 GAERD--TEWAREKVYNIIDSRYR--------------KGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred cCCCC--CHHHHHHHHHHHHHHHH--------------CCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 65322 12236789999985432 1123667888753 3577888985 3588887764
No 249
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.68 E-value=1.1e-08 Score=111.02 Aligned_cols=177 Identities=26% Similarity=0.311 Sum_probs=93.8
Q ss_pred HHHhhhccccchHHHHHHHHHHHHhhccCCC------CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchh
Q 004834 207 AKERLDSDHYGLVRVKQRIIEYLAVRKLKPD------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA 280 (728)
Q Consensus 207 ~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~------~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s 280 (728)
+-..+-..++|.+.+|..|+-.+........ +..-|+||+|.||||||.|.+.+++...+ .+.++..+. +..
T Consensus 18 l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr-~v~~~g~~~-s~~ 95 (331)
T PF00493_consen 18 LANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPR-SVYTSGKGS-SAA 95 (331)
T ss_dssp CHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SS-EEEEECCGS-TCC
T ss_pred HHHHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCc-eEEECCCCc-ccC
Confidence 3445667899999988887654433221111 12338999999999999999988766533 334443331 111
Q ss_pred hhccCccc--ccc-C--CcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecC-
Q 004834 281 DIRGHRRT--YIG-S--MPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDL- 354 (728)
Q Consensus 281 ~l~g~~~~--yvG-~--~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~- 354 (728)
.+.....+ .-| + .+|.+. .+ .++|.+|||+|++..+. .+.|+++|+... ..-...|+...+
T Consensus 96 gLta~~~~d~~~~~~~leaGalv----la--d~GiccIDe~dk~~~~~----~~~l~eaMEqq~---isi~kagi~~~l~ 162 (331)
T PF00493_consen 96 GLTASVSRDPVTGEWVLEAGALV----LA--DGGICCIDEFDKMKEDD----RDALHEAMEQQT---ISIAKAGIVTTLN 162 (331)
T ss_dssp CCCEEECCCGGTSSECEEE-HHH----HC--TTSEEEECTTTT--CHH----HHHHHHHHHCSC---EEECTSSSEEEEE
T ss_pred CccceeccccccceeEEeCCchh----cc--cCceeeecccccccchH----HHHHHHHHHcCe---eccchhhhccccc
Confidence 12111000 001 0 113322 22 35799999999998755 899999998532 222233433322
Q ss_pred CCcEEEEecCCCC-------------CCChhhhCCeeEEE--cCCCCHHHHHHHHHHhh
Q 004834 355 SKVIFVATANRAQ-------------PIPPPLLDRMEVIE--LPGYTPEEKLRIAMRHL 398 (728)
Q Consensus 355 ~~vi~I~TtN~~~-------------~l~~~Ll~R~~vI~--~~~~t~ee~~~Il~~~l 398 (728)
.++-+++++|+.. .++++|++|||.|. .+.++.+.-..+..+.+
T Consensus 163 ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il 221 (331)
T PF00493_consen 163 ARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHIL 221 (331)
T ss_dssp ---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHH
T ss_pred chhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEE
Confidence 2567889999875 68999999999533 46666655555555443
No 250
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.67 E-value=8.5e-07 Score=93.08 Aligned_cols=221 Identities=20% Similarity=0.238 Sum_probs=123.7
Q ss_pred HhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC---------CCeEEEecCCccch
Q 004834 209 ERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---------RKFIRISLGGVKDE 279 (728)
Q Consensus 209 ~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~---------~~~~~i~~~~~~~~ 279 (728)
.+-....+|...+.+.+...-......+..+.|+++++|++|.|||++++..++.-. .|.+.+.+...-+.
T Consensus 30 ~i~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 30 YIRADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred HHhcCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 334556778777666554443333333345668999999999999999999987652 24555555443332
Q ss_pred hhh-------ccCcccc---ccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCC
Q 004834 280 ADI-------RGHRRTY---IGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLN 349 (728)
Q Consensus 280 s~l-------~g~~~~y---vG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~ 349 (728)
..+ .|.+-.- ...........++..+. .+++|||++.+.... ...+..++.+|. +..+-+.
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~v--rmLIIDE~H~lLaGs-~~~qr~~Ln~LK------~L~NeL~ 180 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGV--RMLIIDEFHNLLAGS-YRKQREFLNALK------FLGNELQ 180 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCC--cEEEeechHHHhccc-HHHHHHHHHHHH------HHhhccC
Confidence 221 2222110 11111223455555443 399999999975432 122666666664 2222222
Q ss_pred eeecCCCcEEEEecCCC--CCCChhhhCCeeEEEcCCCCHHH-HHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHH
Q 004834 350 VPFDLSKVIFVATANRA--QPIPPPLLDRMEVIELPGYTPEE-KLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQR 426 (728)
Q Consensus 350 ~~~d~~~vi~I~TtN~~--~~l~~~Ll~R~~vI~~~~~t~ee-~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~ 426 (728)
+++ +.++|.... -.-|+.|-+||+.+.++....++ -..++..+ .....+.+..--.+++...+|...
T Consensus 181 ipi-----V~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~-----e~~LPLr~~S~l~~~~la~~i~~~ 250 (302)
T PF05621_consen 181 IPI-----VGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASF-----ERALPLRKPSNLASPELARRIHER 250 (302)
T ss_pred CCe-----EEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHH-----HHhCCCCCCCCCCCHHHHHHHHHH
Confidence 221 333443222 25578999999999998877643 33344333 122222222222355666777666
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 427 YTREAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 427 ~~~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
..+..| .+.+++..||..++++
T Consensus 251 s~G~iG------~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 251 SEGLIG------ELSRLLNAAAIAAIRS 272 (302)
T ss_pred cCCchH------HHHHHHHHHHHHHHhc
Confidence 555554 6777888888888876
No 251
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.65 E-value=8.2e-08 Score=108.23 Aligned_cols=181 Identities=21% Similarity=0.334 Sum_probs=127.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhC--CCeEEEecCCccc---hhhhccCccccccCCcchHHHHHhhcCC------CC
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALG--RKFIRISLGGVKD---EADIRGHRRTYIGSMPGRLIDGLKRVGV------CN 308 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~--~~~~~i~~~~~~~---~s~l~g~~~~yvG~~~g~l~~~~~~a~~------~~ 308 (728)
.-.+++.|.|||||-.+++++..... .||+-++|..+.+ .+++ +||.+|..+.+.++-.. ..
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesEL-------FGy~~GafTga~~kG~~g~~~~A~g 408 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESEL-------FGYVAGAFTGARRKGYKGKLEQADG 408 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHH-------hccCccccccchhccccccceecCC
Confidence 34589999999999999999987764 5899999987532 4444 45555555544433211 23
Q ss_pred cEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC-------CCCChhhhCCee--E
Q 004834 309 PVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-------QPIPPPLLDRME--V 379 (728)
Q Consensus 309 ~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~-------~~l~~~Ll~R~~--v 379 (728)
..+|+|||..+.-.. ++.||++|.++......... +++|. -+|++|+.. ..|.+.|.-|+. +
T Consensus 409 GtlFldeIgd~p~~~----Qs~LLrVl~e~~v~p~g~~~--~~vdi---rvi~ath~dl~~lv~~g~fredLyyrL~~~~ 479 (606)
T COG3284 409 GTLFLDEIGDMPLAL----QSRLLRVLQEGVVTPLGGTR--IKVDI---RVIAATHRDLAQLVEQGRFREDLYYRLNAFV 479 (606)
T ss_pred CccHHHHhhhchHHH----HHHHHHHHhhCceeccCCcc--eeEEE---EEEeccCcCHHHHHHcCCchHHHHHHhcCee
Confidence 489999999998776 99999999976544333322 56665 478888765 478899999997 5
Q ss_pred EEcCCCCH-HHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHH
Q 004834 380 IELPGYTP-EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 380 I~~~~~t~-ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
|.+|++.+ .++...+.+++ .+++- ..+.++++++..|.. |.+-.++|+|.+.|+.++
T Consensus 480 i~lP~lr~R~d~~~~l~~~~-----~~~~~--~~~~l~~~~~~~l~~-~~WPGNirel~~v~~~~~ 537 (606)
T COG3284 480 ITLPPLRERSDRIPLLDRIL-----KREND--WRLQLDDDALARLLA-YRWPGNIRELDNVIERLA 537 (606)
T ss_pred eccCchhcccccHHHHHHHH-----HHccC--CCccCCHHHHHHHHh-CCCCCcHHHHHHHHHHHH
Confidence 77777654 23333444443 22221 458899999998865 778889999999988877
No 252
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.65 E-value=2e-07 Score=100.53 Aligned_cols=127 Identities=16% Similarity=0.202 Sum_probs=71.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccch-hhhccCccccccCCcchHHHHHhhcCCCCcEEEEecccc
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDE-ADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDK 318 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~-s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidk 318 (728)
..+++|+||||||||+|+.++|+.+-.....+-+-...+. ..+.... + ... ......+.... ..++|+||++..
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~--~-~~~-~~~~~~~~~l~-~~DLLIIDDlG~ 257 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIR--F-NND-KELEEVYDLLI-NCDLLIIDDLGT 257 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHH--h-ccc-hhHHHHHHHhc-cCCEEEEeccCC
Confidence 4789999999999999999999988433223322211111 1111100 0 000 01111122111 246999999987
Q ss_pred cCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC-----CCChhhhCCe----eEEEcCCCCH
Q 004834 319 TGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-----PIPPPLLDRM----EVIELPGYTP 387 (728)
Q Consensus 319 l~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~-----~l~~~Ll~R~----~vI~~~~~t~ 387 (728)
..... ...+.|+++++...... --+|.|||... .+++++.+|+ .+|.|.+.+.
T Consensus 258 e~~t~--~~~~~Lf~iin~R~~~~--------------k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~~G~d~ 319 (329)
T PRK06835 258 EKITE--FSKSELFNLINKRLLRQ--------------KKMIISTNLSLEELLKTYSERISSRLLGNFTLLKFYGEDI 319 (329)
T ss_pred CCCCH--HHHHHHHHHHHHHHHCC--------------CCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEecCcCh
Confidence 64322 23678999998643221 12556777642 4667888887 3577776553
No 253
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.64 E-value=2.1e-08 Score=99.00 Aligned_cols=114 Identities=27% Similarity=0.426 Sum_probs=58.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEe
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLD 314 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllD 314 (728)
..+.+++|+||||||||+||.+++..+ +.+...+++.... ..+... +.......+.+.+.. .++++||
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~--~~l~~~---~~~~~~~~~~~~l~~----~dlLilD 115 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLL--DELKQS---RSDGSYEELLKRLKR----VDLLILD 115 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH--HHHHCC---HCCTTHCHHHHHHHT----SSCEEEE
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCcee--cccccc---ccccchhhhcCcccc----ccEeccc
Confidence 356789999999999999999999877 3444444443321 122211 111112233444443 4699999
Q ss_pred cccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC----------CCChhhhCCe
Q 004834 315 EIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ----------PIPPPLLDRM 377 (728)
Q Consensus 315 Eidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~----------~l~~~Ll~R~ 377 (728)
|+.....+. ...+.|+++++...++ + -.|.|||... .+..++++|+
T Consensus 116 DlG~~~~~~--~~~~~l~~ii~~R~~~--------------~-~tIiTSN~~~~~l~~~~~d~~~a~aildRl 171 (178)
T PF01695_consen 116 DLGYEPLSE--WEAELLFEIIDERYER--------------K-PTIITSNLSPSELEEVLGDRALAEAILDRL 171 (178)
T ss_dssp TCTSS---H--HHHHCTHHHHHHHHHT----------------EEEEEESS-HHHHHT---------------
T ss_pred ccceeeecc--cccccchhhhhHhhcc--------------c-CeEeeCCCchhhHhhccccccccccccccc
Confidence 998654322 2356788888754321 1 2445888762 3456666665
No 254
>PRK12377 putative replication protein; Provisional
Probab=98.63 E-value=5.1e-08 Score=101.01 Aligned_cols=122 Identities=20% Similarity=0.279 Sum_probs=72.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCC---CeEEEecCCccchhhhccCcccccc-CCcchHHHHHhhcCCCCcEEEEec
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGR---KFIRISLGGVKDEADIRGHRRTYIG-SMPGRLIDGLKRVGVCNPVMLLDE 315 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~---~~~~i~~~~~~~~s~l~g~~~~yvG-~~~g~l~~~~~~a~~~~~VlllDE 315 (728)
..+++|+||||||||+||.+||+.+.. ....+++.... ..+.. .|.. .....+.+.+. ..++|+|||
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~--~~l~~---~~~~~~~~~~~l~~l~----~~dLLiIDD 171 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVM--SRLHE---SYDNGQSGEKFLQELC----KVDLLVLDE 171 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHH--HHHHH---HHhccchHHHHHHHhc----CCCEEEEcC
Confidence 357999999999999999999999843 33333332211 11111 1111 01112222222 356999999
Q ss_pred ccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC-----CCChhhhCCee-----EEEcCCC
Q 004834 316 IDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-----PIPPPLLDRME-----VIELPGY 385 (728)
Q Consensus 316 idkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~-----~l~~~Ll~R~~-----vI~~~~~ 385 (728)
++...... .....|+++++..+.. +.-.|.|||... .+.++++||+. .|.|.+.
T Consensus 172 lg~~~~s~--~~~~~l~~ii~~R~~~--------------~~ptiitSNl~~~~l~~~~~~ri~dRl~~~~~~~v~~~g~ 235 (248)
T PRK12377 172 IGIQRETK--NEQVVLNQIIDRRTAS--------------MRSVGMLTNLNHEAMSTLLGERVMDRMTMNGGRWVNFNWE 235 (248)
T ss_pred CCCCCCCH--HHHHHHHHHHHHHHhc--------------CCCEEEEcCCCHHHHHHHhhHHHHHHHhhCCCeEEEeCCc
Confidence 97654322 2378899999865432 112456888753 56677777761 3777765
Q ss_pred C
Q 004834 386 T 386 (728)
Q Consensus 386 t 386 (728)
+
T Consensus 236 s 236 (248)
T PRK12377 236 S 236 (248)
T ss_pred C
Confidence 4
No 255
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.61 E-value=1.7e-07 Score=101.99 Aligned_cols=178 Identities=25% Similarity=0.356 Sum_probs=107.3
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHhhccCCC-----CCC-CEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecC--C
Q 004834 204 LKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPD-----ARG-PVLCFVGPPGVGKTSLASSIASALGRKFIRISLG--G 275 (728)
Q Consensus 204 l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~-----~~~-~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~--~ 275 (728)
...+...+...+||.+++|+.++-.+...--+.. -+| -++||.|.||+.||.|.+.+.+...+..+.---+ |
T Consensus 333 yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSG 412 (721)
T KOG0482|consen 333 YEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSG 412 (721)
T ss_pred HHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCc
Confidence 3445666778899999999998877653221111 112 2899999999999999999998876544322100 0
Q ss_pred c-cchhhhccCccccccCCc---chHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCee
Q 004834 276 V-KDEADIRGHRRTYIGSMP---GRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVP 351 (728)
Q Consensus 276 ~-~~~s~l~g~~~~yvG~~~---g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~ 351 (728)
. .+.+-.+ ....|++. |.+ - -..++|-.|||+||+.... -.+++++|+.. +......|+.
T Consensus 413 VGLTAAVmk---DpvTgEM~LEGGAL----V--LAD~GICCIDEfDKM~e~D----RtAIHEVMEQQ---TISIaKAGI~ 476 (721)
T KOG0482|consen 413 VGLTAAVMK---DPVTGEMVLEGGAL----V--LADGGICCIDEFDKMDESD----RTAIHEVMEQQ---TISIAKAGIN 476 (721)
T ss_pred cccchhhhc---CCCCCeeEeccceE----E--EccCceEeehhhhhhhhhh----hHHHHHHHHhh---hhhhhhhccc
Confidence 0 0000000 00111110 111 0 1134588999999998754 57899999842 2222223333
Q ss_pred ecCC-CcEEEEecCCCC-------------CCChhhhCCeeE--EEcCCCCHHHHHHHHHHh
Q 004834 352 FDLS-KVIFVATANRAQ-------------PIPPPLLDRMEV--IELPGYTPEEKLRIAMRH 397 (728)
Q Consensus 352 ~d~~-~vi~I~TtN~~~-------------~l~~~Ll~R~~v--I~~~~~t~ee~~~Il~~~ 397 (728)
-.+. .+.+++++|+.. .+|++|++||++ +..+.|+.+.-..++++.
T Consensus 477 TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~Hi 538 (721)
T KOG0482|consen 477 TTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHI 538 (721)
T ss_pred cchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHh
Confidence 2222 356778999864 799999999984 556667766555555554
No 256
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.57 E-value=1.7e-06 Score=98.64 Aligned_cols=193 Identities=14% Similarity=0.182 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc-cc----hhhhccCccccccCC
Q 004834 219 VRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV-KD----EADIRGHRRTYIGSM 293 (728)
Q Consensus 219 ~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~-~~----~s~l~g~~~~yvG~~ 293 (728)
.+-.+.|..++..... +..+..+++|+|||||||||+++.+|+.++.......-... .. ..+..+....+..+.
T Consensus 25 kkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~ 103 (519)
T PF03215_consen 25 KKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFL 103 (519)
T ss_pred HHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccccccccccccccccccccc
Confidence 3334555556554332 33445689999999999999999999999876665421111 00 001111000000000
Q ss_pred c-chHHHHH--hhcCC------------CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcE
Q 004834 294 P-GRLIDGL--KRVGV------------CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 358 (728)
Q Consensus 294 ~-g~l~~~~--~~a~~------------~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi 358 (728)
. ...+..| +...+ ...|||++|+-.+.... ...|.++|... .... + ...++
T Consensus 104 sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~----~~~f~~~L~~~-----l~~~-~----~~PlV 169 (519)
T PF03215_consen 104 SQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD----TSRFREALRQY-----LRSS-R----CLPLV 169 (519)
T ss_pred chhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh----HHHHHHHHHHH-----HHcC-C----CCCEE
Confidence 0 0011111 11111 22399999988665433 25555555421 1110 0 01557
Q ss_pred EEEe--c-----CCC--------CCCChhhhCC--eeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHH
Q 004834 359 FVAT--A-----NRA--------QPIPPPLLDR--MEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVK 421 (728)
Q Consensus 359 ~I~T--t-----N~~--------~~l~~~Ll~R--~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~ 421 (728)
||.| . |.. .-|++.++.. +..|.|.+.+..-..+.+++.+........+. ....-..+.++
T Consensus 170 ~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~--~~~p~~~~~l~ 247 (519)
T PF03215_consen 170 FIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGK--NKVPDKQSVLD 247 (519)
T ss_pred EEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCC--ccCCChHHHHH
Confidence 7776 1 111 1477888874 46899999999877777777654322111121 11222345688
Q ss_pred HHHHHcc
Q 004834 422 LVIQRYT 428 (728)
Q Consensus 422 ~l~~~~~ 428 (728)
.|+....
T Consensus 248 ~I~~~s~ 254 (519)
T PF03215_consen 248 SIAESSN 254 (519)
T ss_pred HHHHhcC
Confidence 8877543
No 257
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=1.5e-07 Score=96.98 Aligned_cols=128 Identities=13% Similarity=0.084 Sum_probs=84.6
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhh--ccCccccc----c--CCcchHH---HHHhhcCCC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADI--RGHRRTYI----G--SMPGRLI---DGLKRVGVC 307 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l--~g~~~~yv----G--~~~g~l~---~~~~~a~~~ 307 (728)
.++.+||+||+|+||..+|.++|+.+-+.-..-.|+.-.+-..+ ..|+.-+. + -.-..+. +.+...+..
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 45679999999999999999999988432211122211111111 01111111 0 0011222 333322311
Q ss_pred ---CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCC
Q 004834 308 ---NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPG 384 (728)
Q Consensus 308 ---~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~ 384 (728)
.-|++||++|++.... +|+||..|++- ..+++||.+|+.++.+.|.++|||..+.|+.
T Consensus 86 ~~~~KV~II~~ae~m~~~A----aNaLLK~LEEP---------------p~~t~fiLit~~~~~lLpTI~SRCq~~~~~~ 146 (261)
T PRK05818 86 SNGKKIYIIYGIEKLNKQS----ANSLLKLIEEP---------------PKNTYGIFTTRNENNILNTILSRCVQYVVLS 146 (261)
T ss_pred cCCCEEEEeccHhhhCHHH----HHHHHHhhcCC---------------CCCeEEEEEECChHhCchHhhhheeeeecCC
Confidence 2499999999998876 89999999863 3567999999999999999999999998988
Q ss_pred C
Q 004834 385 Y 385 (728)
Q Consensus 385 ~ 385 (728)
+
T Consensus 147 ~ 147 (261)
T PRK05818 147 K 147 (261)
T ss_pred h
Confidence 7
No 258
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.53 E-value=5.9e-08 Score=101.22 Aligned_cols=116 Identities=27% Similarity=0.440 Sum_probs=70.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccc-hhhhccCccccccCCcchHHHHHhhcCCCCcEEEEeccc
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKD-EADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEID 317 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~-~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEid 317 (728)
.+.+++|+||||||||+||-+||+.+-...+++.+....+ ..++...... |.....+...+.. .+|++|||+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~--~~~~~~l~~~l~~----~dlLIiDDlG 177 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDE--GRLEEKLLRELKK----VDLLIIDDIG 177 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhc--CchHHHHHHHhhc----CCEEEEeccc
Confidence 6778999999999999999999998854334443322211 2233222111 3333344443433 4699999999
Q ss_pred ccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC-----CC-----ChhhhCCe
Q 004834 318 KTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-----PI-----PPPLLDRM 377 (728)
Q Consensus 318 kl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~-----~l-----~~~Ll~R~ 377 (728)
....+. ...+.++++++...+.. .. |.|+|.+. .+ ..++++|+
T Consensus 178 ~~~~~~--~~~~~~~q~I~~r~~~~--------------~~-~~tsN~~~~~~~~~~~~~~~~e~~~dRi 230 (254)
T COG1484 178 YEPFSQ--EEADLLFQLISRRYESR--------------SL-IITSNLSFGEWDELFGDDALTEALLDRI 230 (254)
T ss_pred CccCCH--HHHHHHHHHHHHHHhhc--------------cc-eeecCCChHHHHhhccCchhHHHHHHHH
Confidence 875542 12678888887543321 13 67888864 22 36777765
No 259
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.51 E-value=2.2e-06 Score=85.95 Aligned_cols=173 Identities=20% Similarity=0.285 Sum_probs=115.2
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCC---CeEEEecCCccchhhhccCccccc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR---KFIRISLGGVKDEADIRGHRRTYI 290 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~---~~~~i~~~~~~~~s~l~g~~~~yv 290 (728)
+++|.+..++.+.+....-. ...+..++||+|.-|||||+|+|++-..... ..+.|+-....+.
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~L----------- 127 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATL----------- 127 (287)
T ss_pred HHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhH-----------
Confidence 57899999999988665332 2245568999999999999999999888843 3444432222221
Q ss_pred cCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCC
Q 004834 291 GSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIP 370 (728)
Q Consensus 291 G~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~ 370 (728)
..+.+.++..+ ..-|+|+|+. +-+...+....|-.+||.+ +.--..||+|-+|+|+-..++
T Consensus 128 ----p~l~~~Lr~~~-~kFIlFcDDL---SFe~gd~~yK~LKs~LeG~-----------ve~rP~NVl~YATSNRRHLl~ 188 (287)
T COG2607 128 ----PDLVELLRARP-EKFILFCDDL---SFEEGDDAYKALKSALEGG-----------VEGRPANVLFYATSNRRHLLP 188 (287)
T ss_pred ----HHHHHHHhcCC-ceEEEEecCC---CCCCCchHHHHHHHHhcCC-----------cccCCCeEEEEEecCCccccc
Confidence 23455555443 2348888874 3333334477888888853 222357899999999865333
Q ss_pred h----------------------hhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHc
Q 004834 371 P----------------------PLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRY 427 (728)
Q Consensus 371 ~----------------------~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~ 427 (728)
. .|-+||- .+.|.+++.++-..|+..+. ++.+ +.++++.++.=+-.+
T Consensus 189 e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a-----~~~~-----l~~~~e~l~~eAl~W 258 (287)
T COG2607 189 EDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYA-----KHFG-----LDISDEELHAEALQW 258 (287)
T ss_pred HhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHH-----HHcC-----CCCCHHHHHHHHHHH
Confidence 1 2336886 69999999999999998884 4454 456666666555444
Q ss_pred c
Q 004834 428 T 428 (728)
Q Consensus 428 ~ 428 (728)
.
T Consensus 259 A 259 (287)
T COG2607 259 A 259 (287)
T ss_pred H
Confidence 3
No 260
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=1.2e-06 Score=93.42 Aligned_cols=135 Identities=10% Similarity=0.149 Sum_probs=89.5
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCe-EEEecCCccchhhhccCccccccCCc--chHHHHHhhcCC------CCc
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKF-IRISLGGVKDEADIRGHRRTYIGSMP--GRLIDGLKRVGV------CNP 309 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~-~~i~~~~~~~~s~l~g~~~~yvG~~~--g~l~~~~~~a~~------~~~ 309 (728)
-.+.+||+|+.|+||+++++.+++.+.+.. ..+.- +.+. ..+.-.. ..|... ..+.+.....+. ...
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~-~~~p-~n~~~~d--~~g~~i~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNE-QELP-ANIILFD--IFDKDLSKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCC-CCCC-cceEEec--cCCCcCCHHHHHHHHHHhccCCcccCCce
Confidence 346788999999999999999999983311 00000 0000 0000000 001111 244444443322 223
Q ss_pred EEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHH
Q 004834 310 VMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEE 389 (728)
Q Consensus 310 VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee 389 (728)
|++||++|++.... +|+|+..|++- ..+++||.+|+.++.+.|.+++||.++.|.+++.++
T Consensus 93 vvII~~~e~m~~~a----~NaLLK~LEEP---------------p~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~ 153 (299)
T PRK07132 93 ILIIKNIEKTSNSL----LNALLKTIEEP---------------PKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQK 153 (299)
T ss_pred EEEEecccccCHHH----HHHHHHHhhCC---------------CCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHH
Confidence 99999999997655 89999999852 345688888878899999999999999999999998
Q ss_pred HHHHHHH
Q 004834 390 KLRIAMR 396 (728)
Q Consensus 390 ~~~Il~~ 396 (728)
....+..
T Consensus 154 l~~~l~~ 160 (299)
T PRK07132 154 ILAKLLS 160 (299)
T ss_pred HHHHHHH
Confidence 8766654
No 261
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.50 E-value=3.3e-07 Score=83.93 Aligned_cols=76 Identities=21% Similarity=0.363 Sum_probs=60.3
Q ss_pred hcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCC-EEEEEcCCCCChhHHHHHHHHHh-----CCCeEEEecCC
Q 004834 202 LDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGP-VLCFVGPPGVGKTSLASSIASAL-----GRKFIRISLGG 275 (728)
Q Consensus 202 ~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~-~lLL~GPpGtGKT~LakalA~~l-----~~~~~~i~~~~ 275 (728)
.++..++..|.+.++||.-+.+.|..++......+.+..| ++-|+||||||||.+++.||+.+ ..+++...++.
T Consensus 14 ~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~ 93 (127)
T PF06309_consen 14 YNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIAT 93 (127)
T ss_pred CCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeeccc
Confidence 5677889999999999999999999988876655444444 67799999999999999999997 34566555554
Q ss_pred cc
Q 004834 276 VK 277 (728)
Q Consensus 276 ~~ 277 (728)
.+
T Consensus 94 ~h 95 (127)
T PF06309_consen 94 HH 95 (127)
T ss_pred cc
Confidence 33
No 262
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=1.4e-06 Score=94.79 Aligned_cols=211 Identities=18% Similarity=0.291 Sum_probs=132.6
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC---C--CeEEEecCCccchhhhccCc-
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---R--KFIRISLGGVKDEADIRGHR- 286 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~---~--~~~~i~~~~~~~~s~l~g~~- 286 (728)
..+.|.+.-...+.+|+....- ...+..+.+.|-||+|||.+..-+-..+. . ..+.++|........+.-.-
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 4567888888888888876542 24456788999999999988875554442 2 23566676655544332110
Q ss_pred ----cccccCCcc-hHHHHHhhcC--CCCc-EEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcE
Q 004834 287 ----RTYIGSMPG-RLIDGLKRVG--VCNP-VMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 358 (728)
Q Consensus 287 ----~~yvG~~~g-~l~~~~~~a~--~~~~-VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi 358 (728)
...+|...+ ...+.|...- ...+ |+++||+|.+.... +..|+.+++.-. ...+.++
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~----~~vLy~lFewp~------------lp~sr~i 291 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS----QTVLYTLFEWPK------------LPNSRII 291 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc----cceeeeehhccc------------CCcceee
Confidence 011121112 2223333221 1123 88899999998655 667777776321 1235678
Q ss_pred EEEecCCCC---CCChhhhCCe----eEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHccccc
Q 004834 359 FVATANRAQ---PIPPPLLDRM----EVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 431 (728)
Q Consensus 359 ~I~TtN~~~---~l~~~Ll~R~----~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~ 431 (728)
+|+-+|..+ .+-|.|..|. .++.|++||.++..+|++..+.. .....+-+.+++..++.....+
T Consensus 292 LiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~---------~~t~~~~~~Aie~~ArKvaa~S 362 (529)
T KOG2227|consen 292 LIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE---------ESTSIFLNAAIELCARKVAAPS 362 (529)
T ss_pred eeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc---------ccccccchHHHHHHHHHhccCc
Confidence 899999876 5666666655 37999999999999999988631 1223445578888888777666
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 004834 432 GVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 432 G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
| +|+.. -.+||. |+++++.
T Consensus 363 G--DlRka-Ldv~R~-aiEI~E~ 381 (529)
T KOG2227|consen 363 G--DLRKA-LDVCRR-AIEIAEI 381 (529)
T ss_pred h--hHHHH-HHHHHH-HHHHHHH
Confidence 6 44333 356664 5566654
No 263
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.49 E-value=1.9e-07 Score=96.55 Aligned_cols=121 Identities=19% Similarity=0.297 Sum_probs=72.6
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCccchhhhccCccccc--cCCcchHHHHHhhcCCCCcEEEEec
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKDEADIRGHRRTYI--GSMPGRLIDGLKRVGVCNPVMLLDE 315 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~~~s~l~g~~~~yv--G~~~g~l~~~~~~a~~~~~VlllDE 315 (728)
.+++|+||||||||+|+.+||..+. .....+++.... ..+.. .|. ......+.+.+. ...+|+|||
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~--~~l~~---~~~~~~~~~~~~l~~l~----~~dlLvIDD 170 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM--SAMKD---TFSNSETSEEQLLNDLS----NVDLLVIDE 170 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH--HHHHH---HHhhccccHHHHHHHhc----cCCEEEEeC
Confidence 4799999999999999999999983 344444332211 11111 111 111122333332 346999999
Q ss_pred ccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC-----CCChhhhCCe-----eEEEcCCC
Q 004834 316 IDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-----PIPPPLLDRM-----EVIELPGY 385 (728)
Q Consensus 316 idkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~-----~l~~~Ll~R~-----~vI~~~~~ 385 (728)
++...... .....|+++++.++.. +.-+|.|||... .+++.+++|+ .+|.|...
T Consensus 171 ig~~~~s~--~~~~~l~~Ii~~Ry~~--------------~~~tiitSNl~~~~l~~~~g~ri~sRl~~~~~~~i~f~~~ 234 (244)
T PRK07952 171 IGVQTESR--YEKVIINQIVDRRSSS--------------KRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWD 234 (244)
T ss_pred CCCCCCCH--HHHHHHHHHHHHHHhC--------------CCCEEEeCCCCHHHHHHHhChHHHHHHHHCCceEEEeeCC
Confidence 99875321 1245788899854321 124567888753 5677777776 25777765
Q ss_pred C
Q 004834 386 T 386 (728)
Q Consensus 386 t 386 (728)
+
T Consensus 235 s 235 (244)
T PRK07952 235 S 235 (244)
T ss_pred c
Confidence 4
No 264
>PF13173 AAA_14: AAA domain
Probab=98.44 E-value=1.2e-06 Score=81.74 Aligned_cols=118 Identities=24% Similarity=0.325 Sum_probs=74.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhC--CCeEEEecCCccchhhhccCccccccCCcchHHHHHhhc-CCCCcEEEEecc
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALG--RKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRV-GVCNPVMLLDEI 316 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~--~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a-~~~~~VlllDEi 316 (728)
++.+++.||.||||||+++.+++.+. .....+++......... ... +.+.+... .....++|||||
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~~~i~iDEi 70 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA----------DPD-LLEYFLELIKPGKKYIFIDEI 70 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh----------hhh-hHHHHHHhhccCCcEEEEehh
Confidence 46789999999999999999998876 66777777654331100 000 22333332 113469999999
Q ss_pred cccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEE-ecCCCC---CCChhhhCCeeEEEcCCCCHHH
Q 004834 317 DKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVA-TANRAQ---PIPPPLLDRMEVIELPGYTPEE 389 (728)
Q Consensus 317 dkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~-TtN~~~---~l~~~Ll~R~~vI~~~~~t~ee 389 (728)
..+. +. ...+-.+.|.. .++-||+ +++... .....|..|...+.+.|++..|
T Consensus 71 q~~~-~~----~~~lk~l~d~~----------------~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 71 QYLP-DW----EDALKFLVDNG----------------PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred hhhc-cH----HHHHHHHHHhc----------------cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 9984 22 34444444421 2233444 444332 4567788899999999998876
No 265
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.41 E-value=4.4e-06 Score=94.96 Aligned_cols=202 Identities=24% Similarity=0.325 Sum_probs=125.9
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC--------CCeEEEecCC--ccchhhh-
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG--------RKFIRISLGG--VKDEADI- 282 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~--------~~~~~i~~~~--~~~~s~l- 282 (728)
.+-+.+.-...|..++...... ...+..+.+.|-||||||.++..+-+.|- ++|..+.+.| +..+.++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHH
Confidence 3445666667777777654432 34455788899999999999999988662 3444444333 3333222
Q ss_pred -------ccCccccccCCcchHHHHHhh--cCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeec
Q 004834 283 -------RGHRRTYIGSMPGRLIDGLKR--VGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD 353 (728)
Q Consensus 283 -------~g~~~~yvG~~~g~l~~~~~~--a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d 353 (728)
.|++-++.-+. ..+...|.. ......|++|||.|.+.... +..|+.+||.-. ..
T Consensus 476 ~~I~~~lsg~~~~~~~al-~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~----QdVlYn~fdWpt------------~~ 538 (767)
T KOG1514|consen 476 EKIWEALSGERVTWDAAL-EALNFRFTVPKPKRSTTVVLIDELDILVTRS----QDVLYNIFDWPT------------LK 538 (767)
T ss_pred HHHHHhcccCcccHHHHH-HHHHHhhccCCCCCCCEEEEeccHHHHhccc----HHHHHHHhcCCc------------CC
Confidence 22222211110 112222221 11122399999999998766 899999999532 12
Q ss_pred CCCcEEEEecCCCCCCChhhh-----CCee--EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHH
Q 004834 354 LSKVIFVATANRAQPIPPPLL-----DRME--VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQR 426 (728)
Q Consensus 354 ~~~vi~I~TtN~~~~l~~~Ll-----~R~~--vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~ 426 (728)
-++.++|+-+|..+ +|+.++ +|+. .|.|.+|+.+++.+|+...|. ++ ..++.++++.+++.
T Consensus 539 ~sKLvvi~IaNTmd-lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~-------~~----~~f~~~aielvark 606 (767)
T KOG1514|consen 539 NSKLVVIAIANTMD-LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLK-------GL----DAFENKAIELVARK 606 (767)
T ss_pred CCceEEEEeccccc-CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhc-------ch----hhcchhHHHHHHHH
Confidence 46778999898887 455554 4764 699999999999999988763 12 35688888888875
Q ss_pred cccccchHHHHHHHHHHHHHHH
Q 004834 427 YTREAGVRNLERNLAALARAAA 448 (728)
Q Consensus 427 ~~~~~G~R~L~~~I~~l~r~a~ 448 (728)
...-+| .. |..-.+|++|+
T Consensus 607 VAavSG--Da-Rraldic~RA~ 625 (767)
T KOG1514|consen 607 VAAVSG--DA-RRALDICRRAA 625 (767)
T ss_pred HHhccc--cH-HHHHHHHHHHH
Confidence 544444 22 34446776544
No 266
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.41 E-value=2.2e-07 Score=87.84 Aligned_cols=125 Identities=26% Similarity=0.418 Sum_probs=75.9
Q ss_pred chHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCC---CeEEEecCCccchhhhccCccccccCC
Q 004834 217 GLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR---KFIRISLGGVKDEADIRGHRRTYIGSM 293 (728)
Q Consensus 217 G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~---~~~~i~~~~~~~~s~l~g~~~~yvG~~ 293 (728)
|.....+++.+.+.... .....++|+|+|||||+++|+.|....+. +|+.+++.. .
T Consensus 2 G~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~-----------------~ 60 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCAS-----------------L 60 (138)
T ss_dssp -SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHC-----------------T
T ss_pred CCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhh-----------------C
Confidence 44444555555444332 23446899999999999999999987754 333333222 1
Q ss_pred cchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC-------
Q 004834 294 PGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA------- 366 (728)
Q Consensus 294 ~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~------- 366 (728)
+ .+.+..+ .++.++|+|+|.+.+.. +..|++.|+... ..++-+|+|+...
T Consensus 61 ~---~~~l~~a--~~gtL~l~~i~~L~~~~----Q~~L~~~l~~~~--------------~~~~RlI~ss~~~l~~l~~~ 117 (138)
T PF14532_consen 61 P---AELLEQA--KGGTLYLKNIDRLSPEA----QRRLLDLLKRQE--------------RSNVRLIASSSQDLEELVEE 117 (138)
T ss_dssp C---HHHHHHC--TTSEEEEECGCCS-HHH----HHHHHHHHHHCT--------------TTTSEEEEEECC-CCCHHHH
T ss_pred c---HHHHHHc--CCCEEEECChHHCCHHH----HHHHHHHHHhcC--------------CCCeEEEEEeCCCHHHHhhc
Confidence 1 2333333 46799999999999877 888888887421 1233555655443
Q ss_pred CCCChhhhCCee--EEEcCCC
Q 004834 367 QPIPPPLLDRME--VIELPGY 385 (728)
Q Consensus 367 ~~l~~~Ll~R~~--vI~~~~~ 385 (728)
..+.+.|..|+. .|.+|++
T Consensus 118 ~~~~~~L~~~l~~~~i~lPpL 138 (138)
T PF14532_consen 118 GRFSPDLYYRLSQLEIHLPPL 138 (138)
T ss_dssp STHHHHHHHHCSTCEEEE---
T ss_pred cchhHHHHHHhCCCEEeCCCC
Confidence 267888888885 5777764
No 267
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.35 E-value=5.7e-07 Score=100.08 Aligned_cols=157 Identities=20% Similarity=0.315 Sum_probs=90.4
Q ss_pred hhhccccchHHHHHHHHHHHHhhccCCCC-----CC-CEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhc
Q 004834 210 RLDSDHYGLVRVKQRIIEYLAVRKLKPDA-----RG-PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIR 283 (728)
Q Consensus 210 ~L~~~i~G~~~vk~~i~~~l~~~~~~~~~-----~~-~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~ 283 (728)
.+...+||.+.+|..+.-.+....-+... +| -++||+|.||||||.+.|.+++...+..+.--.+. +...+.
T Consensus 446 SiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGA--SavGLT 523 (854)
T KOG0477|consen 446 SIAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGA--SAVGLT 523 (854)
T ss_pred hhCchhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCc--ccccee
Confidence 34567899999999887766543221111 11 28999999999999999999998876554322111 100000
Q ss_pred cCccccccCCcchHHHHHhhcC----CCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecC-CCcE
Q 004834 284 GHRRTYIGSMPGRLIDGLKRVG----VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDL-SKVI 358 (728)
Q Consensus 284 g~~~~yvG~~~g~l~~~~~~a~----~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~-~~vi 358 (728)
. |+-..| -..++...++ ...+|-+|||+||+.... -..+.+.|+.. .......|+.-.+ ..|.
T Consensus 524 a----~v~KdP-vtrEWTLEaGALVLADkGvClIDEFDKMndqD----RtSIHEAMEQQ---SISISKAGIVtsLqArct 591 (854)
T KOG0477|consen 524 A----YVRKDP-VTREWTLEAGALVLADKGVCLIDEFDKMNDQD----RTSIHEAMEQQ---SISISKAGIVTSLQARCT 591 (854)
T ss_pred E----EEeeCC-ccceeeeccCeEEEccCceEEeehhhhhcccc----cchHHHHHHhc---chhhhhhhHHHHHHhhhh
Confidence 0 000000 0011111111 134699999999997644 34566666631 1212222322222 2468
Q ss_pred EEEecCCCC-------------CCChhhhCCeeEE
Q 004834 359 FVATANRAQ-------------PIPPPLLDRMEVI 380 (728)
Q Consensus 359 ~I~TtN~~~-------------~l~~~Ll~R~~vI 380 (728)
+|+|+|+.. .+.+++++||+++
T Consensus 592 vIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiL 626 (854)
T KOG0477|consen 592 VIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDIL 626 (854)
T ss_pred hheecCCCCCccCCccchhhccccccchhhhccee
Confidence 899999842 6789999999963
No 268
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.34 E-value=8.1e-07 Score=91.19 Aligned_cols=133 Identities=21% Similarity=0.286 Sum_probs=77.8
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecccccC
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTG 320 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~ 320 (728)
..-.+.||+|||||++++.+|+.+|+..+.++|+...+...+ +++...+.. ....+.+||++++.
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l------------~ril~G~~~---~GaW~cfdefnrl~ 97 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSL------------SRILKGLAQ---SGAWLCFDEFNRLS 97 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHH------------HHHHHHHHH---HT-EEEEETCCCSS
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHH------------HHHHHHHhh---cCchhhhhhhhhhh
Confidence 345689999999999999999999999999999986653322 233333333 34599999999998
Q ss_pred CCCCCCHHHHHHHhcCccc------ccccccCCCCeeecCC-CcEEEEecCCC----CCCChhhhCCeeEEEcCCCCHHH
Q 004834 321 SDVRGDPASALLEVLDPEQ------NKTFNDHYLNVPFDLS-KVIFVATANRA----QPIPPPLLDRMEVIELPGYTPEE 389 (728)
Q Consensus 321 ~~~~~~~~~~Ll~~Ld~~~------~~~~~d~~~~~~~d~~-~vi~I~TtN~~----~~l~~~Ll~R~~vI~~~~~t~ee 389 (728)
.+. .+.+.+.+..-+ ...+. +.+..+... ++-++.|.|+. ..+|+.|..-|..|.+..|+..-
T Consensus 98 ~~v----LS~i~~~i~~i~~al~~~~~~~~--~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~~PD~~~ 171 (231)
T PF12774_consen 98 EEV----LSVISQQIQSIQDALRAKQKSFT--LEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMMVPDLSL 171 (231)
T ss_dssp HHH----HHHHHHHHHHHHHHHHCTSSEEE--ETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--S--HHH
T ss_pred HHH----HHHHHHHHHHHHHhhcccccccc--cCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeEEeCCCHHH
Confidence 765 444433332111 11111 223333333 34455688865 37999999999888888888776
Q ss_pred HHHHH
Q 004834 390 KLRIA 394 (728)
Q Consensus 390 ~~~Il 394 (728)
..++.
T Consensus 172 I~ei~ 176 (231)
T PF12774_consen 172 IAEIL 176 (231)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 269
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=4.3e-06 Score=91.89 Aligned_cols=140 Identities=23% Similarity=0.312 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcc----hHHHHHhhcCCC-CcEEE
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPG----RLIDGLKRVGVC-NPVML 312 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g----~l~~~~~~a~~~-~~Vll 312 (728)
.+-..+||.||||+|||+||-.+|...+-||+++--. . ..+|..+. .+...|..+-.+ -++++
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSp-----e-------~miG~sEsaKc~~i~k~F~DAYkS~lsiiv 603 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISP-----E-------DMIGLSESAKCAHIKKIFEDAYKSPLSIIV 603 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeCh-----H-------HccCccHHHHHHHHHHHHHHhhcCcceEEE
Confidence 3444899999999999999999999999999988432 2 34555542 455566655432 24999
Q ss_pred EecccccCCCCCCCH--HHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCC-hhhhCCee-EEEcCCCCH-
Q 004834 313 LDEIDKTGSDVRGDP--ASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIP-PPLLDRME-VIELPGYTP- 387 (728)
Q Consensus 313 lDEidkl~~~~~~~~--~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~-~~Ll~R~~-vI~~~~~t~- 387 (728)
+|+|+.+..-..=.| .|.++|.|-- +.. ..|-.-++.++++||...+.+. -.+++-|+ .+.+|.++.
T Consensus 604 vDdiErLiD~vpIGPRfSN~vlQaL~V-----llK---~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 604 VDDIERLLDYVPIGPRFSNLVLQALLV-----LLK---KQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTG 675 (744)
T ss_pred EcchhhhhcccccCchhhHHHHHHHHH-----Hhc---cCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCch
Confidence 999998743221001 4555554420 110 1111223456777776544222 23455665 799999887
Q ss_pred HHHHHHHHHh
Q 004834 388 EEKLRIAMRH 397 (728)
Q Consensus 388 ee~~~Il~~~ 397 (728)
++..+++...
T Consensus 676 ~~~~~vl~~~ 685 (744)
T KOG0741|consen 676 EQLLEVLEEL 685 (744)
T ss_pred HHHHHHHHHc
Confidence 6666666553
No 270
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=98.30 E-value=1.3e-05 Score=85.79 Aligned_cols=59 Identities=25% Similarity=0.506 Sum_probs=50.1
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCC-CeEEE
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR-KFIRI 271 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~-~~~~i 271 (728)
.++||++++++++.+++............+++|.||+|+||||+++.|-+.+.. +.+.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l 120 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTL 120 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEe
Confidence 479999999999999998877666778889999999999999999999988842 34443
No 271
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.26 E-value=4.2e-06 Score=85.77 Aligned_cols=189 Identities=17% Similarity=0.258 Sum_probs=109.4
Q ss_pred CEEEEEcCCCCChhHHHHHHHHH------hCCCeEEEecCCc---cchhhhccCccc-cccCCcchHHHHHhhcCCCCcE
Q 004834 241 PVLCFVGPPGVGKTSLASSIASA------LGRKFIRISLGGV---KDEADIRGHRRT-YIGSMPGRLIDGLKRVGVCNPV 310 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~------l~~~~~~i~~~~~---~~~s~l~g~~~~-yvG~~~g~l~~~~~~a~~~~~V 310 (728)
..+||.||+|.|||.||+-|-+. +.-+|+.++|... ...+.+.||-.+ +.|+...+ ...++.+ ..+.
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r-~gllrsa--dggm 285 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESR-EGLLRSA--DGGM 285 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhh-hhhhccC--CCce
Confidence 34889999999999999988654 3578999998754 446777787643 33333211 1223332 3569
Q ss_pred EEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEE-ecCCC------CCCChhhhCCeeEEEcC
Q 004834 311 MLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVA-TANRA------QPIPPPLLDRMEVIELP 383 (728)
Q Consensus 311 lllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~-TtN~~------~~l~~~Ll~R~~vI~~~ 383 (728)
+|+|||..+..+. +..||..+++. +|......+.+. +.+-+|+ |.... ..|.+.|.-|+....|.
T Consensus 286 lfldeigelgade----qamllkaieek---rf~pfgsdr~v~-sdfqliagtvrdlrq~vaeg~fredl~arinlwtf~ 357 (531)
T COG4650 286 LFLDEIGELGADE----QAMLLKAIEEK---RFYPFGSDRQVS-SDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFT 357 (531)
T ss_pred EehHhhhhcCccH----HHHHHHHHHhh---ccCCCCCccccc-cchHHhhhhHHHHHHHHhccchHHHHHHhhheeeee
Confidence 9999999998766 89999999864 454443344432 2233444 43332 36778888888754444
Q ss_pred CCCHHHHHHHHHHhhc---hHHHhhcCCCccccccCHHHHHHHHH-----HcccccchHHHHHHHHHH
Q 004834 384 GYTPEEKLRIAMRHLI---PRVLDQHGLGSEFLQIPEAMVKLVIQ-----RYTREAGVRNLERNLAAL 443 (728)
Q Consensus 384 ~~t~ee~~~Il~~~l~---~~~~~~~~~~~~~~~i~d~~l~~l~~-----~~~~~~G~R~L~~~I~~l 443 (728)
-|...++.+=+.-.+. .+....+ ...+.+.-++-..... ...+..+.|.|...+.++
T Consensus 358 lpgl~qr~ediepnldyelerha~~~---g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrm 422 (531)
T COG4650 358 LPGLRQRQEDIEPNLDYELERHASLT---GDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRM 422 (531)
T ss_pred ccccccCccccCCCccHHHHHHHHhh---CceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHH
Confidence 4444443332222221 1222222 3456666666544433 222344556655544433
No 272
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.25 E-value=1.4e-06 Score=78.61 Aligned_cols=107 Identities=19% Similarity=0.342 Sum_probs=57.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecccccCCC
Q 004834 243 LCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSD 322 (728)
Q Consensus 243 lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~ 322 (728)
++|+||||+|||++++.||..+...+..-.-.. -|............. ..+++++||+......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~------------vy~~~~~~~~w~gY~----~q~vvi~DD~~~~~~~ 64 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDS------------VYTRNPGDKFWDGYQ----GQPVVIIDDFGQDNDG 64 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCc------------EEeCCCccchhhccC----CCcEEEEeecCccccc
Confidence 479999999999999999988853331000000 011111111111111 2469999999988754
Q ss_pred CCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCC
Q 004834 323 VRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR 365 (728)
Q Consensus 323 ~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~ 365 (728)
......+.|+++++......-.....+...-+...+||+|||.
T Consensus 65 ~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 65 YNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred cchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 2112367788888753322111111111112333478889984
No 273
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=98.22 E-value=6.2e-06 Score=91.40 Aligned_cols=163 Identities=25% Similarity=0.299 Sum_probs=100.4
Q ss_pred HHHhhhccccchHHHHHHHHHHHHhhc---cCCC--CCC-CEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccc--
Q 004834 207 AKERLDSDHYGLVRVKQRIIEYLAVRK---LKPD--ARG-PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKD-- 278 (728)
Q Consensus 207 ~~~~L~~~i~G~~~vk~~i~~~l~~~~---~~~~--~~~-~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~-- 278 (728)
+.+.|...++|.+.+|+.|+-.+.... +.+. -+| -++||+|.|-|.||.|.|.+-+...+. |.-+|--+
T Consensus 295 La~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplA---I~TTGRGSSG 371 (818)
T KOG0479|consen 295 LARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLA---IATTGRGSSG 371 (818)
T ss_pred HhhccCcccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhccccc---ccccCCCCCC
Confidence 344567789999999999987664321 1111 112 279999999999999999987765322 11111000
Q ss_pred --------hhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCe
Q 004834 279 --------EADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNV 350 (728)
Q Consensus 279 --------~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~ 350 (728)
...-.|.++--.| ++-. ...+|+.|||+||++.-. --+++++|+.. +.+....|+
T Consensus 372 VGLTAAVTtD~eTGERRLEAG--------AMVL--ADRGVVCIDEFDKMsDiD----RvAIHEVMEQq---tVTIaKAGI 434 (818)
T KOG0479|consen 372 VGLTAAVTTDQETGERRLEAG--------AMVL--ADRGVVCIDEFDKMSDID----RVAIHEVMEQQ---TVTIAKAGI 434 (818)
T ss_pred ccceeEEeeccccchhhhhcC--------ceEE--ccCceEEehhcccccchh----HHHHHHHHhcc---eEEeEeccc
Confidence 0000111111111 1111 134699999999998643 57899999853 333334454
Q ss_pred eecCC-CcEEEEecCCCC-------------CCChhhhCCee--EEEcCCCCHHH
Q 004834 351 PFDLS-KVIFVATANRAQ-------------PIPPPLLDRME--VIELPGYTPEE 389 (728)
Q Consensus 351 ~~d~~-~vi~I~TtN~~~-------------~l~~~Ll~R~~--vI~~~~~t~ee 389 (728)
...+. .|-+++++|+.. .+|+.||+||+ +|.+...+.+.
T Consensus 435 HasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~ 489 (818)
T KOG0479|consen 435 HASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADI 489 (818)
T ss_pred hhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchH
Confidence 44333 578999999975 68999999998 35565555543
No 274
>PRK06921 hypothetical protein; Provisional
Probab=98.22 E-value=2.5e-06 Score=89.66 Aligned_cols=28 Identities=39% Similarity=0.638 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
.+.+++|+||||||||+|+.+||+.+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 4668999999999999999999998743
No 275
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.13 E-value=5.8e-06 Score=84.21 Aligned_cols=183 Identities=20% Similarity=0.253 Sum_probs=88.3
Q ss_pred cchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE-EEecCC--ccchh---hh-------
Q 004834 216 YGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI-RISLGG--VKDEA---DI------- 282 (728)
Q Consensus 216 ~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~-~i~~~~--~~~~s---~l------- 282 (728)
+|.++..+.+.+++.. .+..+++++||.|+|||+|++.+...+..... .+.+.. ..... ..
T Consensus 2 ~gR~~el~~l~~~l~~------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 2 FGREKELEKLKELLES------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLA 75 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHH
Confidence 5666767777776542 24568999999999999999999998843221 111111 11100 00
Q ss_pred ------ccCc-cccc---------cCCcc---hHHHHHhhcCCCCcEEEEecccccC-CCCC-CCHHHHHHHhcCccccc
Q 004834 283 ------RGHR-RTYI---------GSMPG---RLIDGLKRVGVCNPVMLLDEIDKTG-SDVR-GDPASALLEVLDPEQNK 341 (728)
Q Consensus 283 ------~g~~-~~yv---------G~~~g---~l~~~~~~a~~~~~VlllDEidkl~-~~~~-~~~~~~Ll~~Ld~~~~~ 341 (728)
.+.. +... ..... .+.+.+.... ...|++|||++.+. .... .+-...|...++...
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~-- 152 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKG-KKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL-- 152 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCH-CCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcC-CcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc--
Confidence 0000 0000 00111 2223333322 23699999999998 2211 111344555554210
Q ss_pred ccccCCCCeeecCCCc-EEEEecCC-----CCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCcccccc
Q 004834 342 TFNDHYLNVPFDLSKV-IFVATANR-----AQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQI 415 (728)
Q Consensus 342 ~~~d~~~~~~~d~~~v-i~I~TtN~-----~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i 415 (728)
...++ +++++++. ...-..++.+|+..+.+++++.++..++++..+. +. ..+..
T Consensus 153 -----------~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~-----~~----~~~~~ 212 (234)
T PF01637_consen 153 -----------SQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFK-----EL----IKLPF 212 (234)
T ss_dssp -------------TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHH-----CC---------
T ss_pred -----------ccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHH-----Hh----hcccC
Confidence 01222 34444432 1234566888998899999999999998888642 11 11245
Q ss_pred CHHHHHHHHHHc
Q 004834 416 PEAMVKLVIQRY 427 (728)
Q Consensus 416 ~d~~l~~l~~~~ 427 (728)
+++.++.+..-+
T Consensus 213 ~~~~~~~i~~~~ 224 (234)
T PF01637_consen 213 SDEDIEEIYSLT 224 (234)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHHHh
Confidence 888888887644
No 276
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.13 E-value=1.6e-05 Score=87.05 Aligned_cols=175 Identities=22% Similarity=0.254 Sum_probs=98.5
Q ss_pred HhhhccccchHHHHHHHHHHHHhh--ccCCC---CCC-CEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc-cchhh
Q 004834 209 ERLDSDHYGLVRVKQRIIEYLAVR--KLKPD---ARG-PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV-KDEAD 281 (728)
Q Consensus 209 ~~L~~~i~G~~~vk~~i~~~l~~~--~~~~~---~~~-~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~-~~~s~ 281 (728)
+.+...+||.+++|+.|.=.+-.. +..|+ .+| -++||.|.|||.||.|.+-+-+.... -+.-+|. .+.+.
T Consensus 327 ~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPI---aVYTSGKGSSAAG 403 (729)
T KOG0481|consen 327 KSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPI---AVYTSGKGSSAAG 403 (729)
T ss_pred hccCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCce---EEEecCCCccccc
Confidence 445567899999999886555322 11121 112 28999999999999999988765422 2222332 11111
Q ss_pred hcc----CccccccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeee-cCCC
Q 004834 282 IRG----HRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPF-DLSK 356 (728)
Q Consensus 282 l~g----~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~-d~~~ 356 (728)
+-. .+.+.-=+++|. ++-. ..++|+.|||+||+-.+. --++++.|+.. +......|++- =.+.
T Consensus 404 LTASV~RD~~tReFylEGG---AMVL--ADgGVvCIDEFDKMre~D----RVAIHEAMEQQ---TISIAKAGITT~LNSR 471 (729)
T KOG0481|consen 404 LTASVIRDPSTREFYLEGG---AMVL--ADGGVVCIDEFDKMREDD----RVAIHEAMEQQ---TISIAKAGITTTLNSR 471 (729)
T ss_pred ceeeEEecCCcceEEEecc---eEEE--ecCCEEEeehhhccCchh----hhHHHHHHHhh---hHHHhhhcceeeecch
Confidence 100 000000011111 1111 235699999999997765 57788888742 22222334332 2345
Q ss_pred cEEEEecCCCC-------------CCChhhhCCeeEEE-cCCCCHHHHHHHHHHhh
Q 004834 357 VIFVATANRAQ-------------PIPPPLLDRMEVIE-LPGYTPEEKLRIAMRHL 398 (728)
Q Consensus 357 vi~I~TtN~~~-------------~l~~~Ll~R~~vI~-~~~~t~ee~~~Il~~~l 398 (728)
+-+++++|+.. .|-+.+|+||+.|+ +..-..+++-..+.+|.
T Consensus 472 tSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHV 527 (729)
T KOG0481|consen 472 TSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHV 527 (729)
T ss_pred hhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHh
Confidence 67889999864 57799999999544 44433344444444443
No 277
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.12 E-value=9.5e-06 Score=88.86 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=54.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHH-hCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASA-LGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEI 316 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~-l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEi 316 (728)
..+.++++.||||||||+++.+++.. .-.. ++..+.+.+...-.. ..+... ....+++|||+
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~s------G~f~T~a~Lf~~L~~----------~~lg~v-~~~DlLI~DEv 269 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILIS------GGTITVAKLFYNIST----------RQIGLV-GRWDVVAFDEV 269 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHc------CCcCcHHHHHHHHHH----------HHHhhh-ccCCEEEEEcC
Confidence 35678999999999999999998876 2111 134444444321111 111111 12359999999
Q ss_pred cccCCCCCCCHHHHHHHhcCccccc
Q 004834 317 DKTGSDVRGDPASALLEVLDPEQNK 341 (728)
Q Consensus 317 dkl~~~~~~~~~~~Ll~~Ld~~~~~ 341 (728)
..+..+...+..+.|..-|+.++..
T Consensus 270 gylp~~~~~~~v~imK~yMesg~fs 294 (449)
T TIGR02688 270 ATLKFAKPKELIGILKNYMESGSFT 294 (449)
T ss_pred CCCcCCchHHHHHHHHHHHHhCcee
Confidence 9977665445567777777765443
No 278
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.09 E-value=3e-06 Score=78.72 Aligned_cols=90 Identities=28% Similarity=0.406 Sum_probs=52.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHh--------CCCeEEEecCCccchhhh-------ccCccccccCCc----chHHHH
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASAL--------GRKFIRISLGGVKDEADI-------RGHRRTYIGSMP----GRLIDG 300 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l--------~~~~~~i~~~~~~~~s~l-------~g~~~~yvG~~~----g~l~~~ 300 (728)
+..++++||||+|||++++.+++.+ ..+.+.+.+....+...+ .+.+... +... ..+.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-RQTSDELRSLLIDA 82 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-cCCHHHHHHHHHHH
Confidence 4578899999999999999999988 556677776654433322 1211111 1112 233444
Q ss_pred HhhcCCCCcEEEEeccccc-CCCCCCCHHHHHHHhcC
Q 004834 301 LKRVGVCNPVMLLDEIDKT-GSDVRGDPASALLEVLD 336 (728)
Q Consensus 301 ~~~a~~~~~VlllDEidkl-~~~~~~~~~~~Ll~~Ld 336 (728)
+..... .+++|||+|.+ ... ..+.|..+++
T Consensus 83 l~~~~~--~~lviDe~~~l~~~~----~l~~l~~l~~ 113 (131)
T PF13401_consen 83 LDRRRV--VLLVIDEADHLFSDE----FLEFLRSLLN 113 (131)
T ss_dssp HHHCTE--EEEEEETTHHHHTHH----HHHHHHHHTC
T ss_pred HHhcCC--eEEEEeChHhcCCHH----HHHHHHHHHh
Confidence 444332 48999999998 422 2566666655
No 279
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.07 E-value=3.3e-06 Score=85.91 Aligned_cols=38 Identities=29% Similarity=0.476 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++++||||||||||.+.||.........+.+.|
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g 64 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDG 64 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 57889999999999999999999999876666665544
No 280
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2.5e-05 Score=89.75 Aligned_cols=177 Identities=27% Similarity=0.384 Sum_probs=123.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCC-cEEEEecc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCN-PVMLLDEI 316 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~-~VlllDEi 316 (728)
.+...++++||||+|||++++++|.. +..+ ....+.... .+|.|.....+...+..+.... +++++||+
T Consensus 16 ~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~ 85 (494)
T COG0464 16 EPPKGVLLHGPPGTGKTLLARALANE-GAEF--LSINGPEIL-------SKYVGESELRLRELFEEAEKLAPSIIFIDEI 85 (494)
T ss_pred CCCCCceeeCCCCCchhHHHHHHHhc-cCcc--cccCcchhh-------hhhhhHHHHHHHHHHHHHHHhCCCeEeechh
Confidence 45668999999999999999999998 4433 332222221 2567776777777777665554 49999999
Q ss_pred cccCCCCCCC-------HHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCC
Q 004834 317 DKTGSDVRGD-------PASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYT 386 (728)
Q Consensus 317 dkl~~~~~~~-------~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t 386 (728)
|.+.+..... ..+.|+..++... ... +++++.+|.+..++++++. ||+ .+.+..++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-------------~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (494)
T COG0464 86 DALAPKRSSDQGEVERRVVAQLLALMDGLK-------------RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPD 151 (494)
T ss_pred hhcccCccccccchhhHHHHHHHHhccccc-------------CCc-eEEEeecCCccccChhHhCccccceeeecCCCC
Confidence 9998876431 1466676666421 223 6778899999999999986 887 68899888
Q ss_pred HHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 387 PEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 387 ~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
...+.+|...+... . ..-.+.....++....+..| +.+..+|++++...++.
T Consensus 152 ~~~~~ei~~~~~~~-------~----~~~~~~~~~~~a~~~~~~~~-----~~~~~l~~~~~~~~~~r 203 (494)
T COG0464 152 EAGRLEILQIHTRL-------M----FLGPPGTGKTLAARTVGKSG-----ADLGALAKEAALRELRR 203 (494)
T ss_pred HHHHHHHHHHHHhc-------C----CCcccccHHHHHHhcCCccH-----HHHHHHHHHHHHHHHHh
Confidence 88888888776321 1 11114455666665555555 78888888888877776
No 281
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.6e-05 Score=94.25 Aligned_cols=153 Identities=23% Similarity=0.299 Sum_probs=101.5
Q ss_pred cccch-HHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC----------CCeEEEecCCccchhhh
Q 004834 214 DHYGL-VRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG----------RKFIRISLGGVKDEADI 282 (728)
Q Consensus 214 ~i~G~-~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~----------~~~~~i~~~~~~~~s~l 282 (728)
.++|. ++-.+++.+.+.... +.+-+|+|.||+|||.++.-+|+... ..++.++++....
T Consensus 187 Pvigr~deeirRvi~iL~Rrt------k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~a---- 256 (898)
T KOG1051|consen 187 PVIGRHDEEIRRVIEILSRKT------KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVA---- 256 (898)
T ss_pred CccCCchHHHHHHHHHHhccC------CCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhccc----
Confidence 46666 777888888775432 24668999999999999999998872 3455566654222
Q ss_pred ccCccccccCCcchHHHHHhhcCCC--CcEEEEecccccCCCCCC----CHHHHHHHhcCcccccccccCCCCeeecCCC
Q 004834 283 RGHRRTYIGSMPGRLIDGLKRVGVC--NPVMLLDEIDKTGSDVRG----DPASALLEVLDPEQNKTFNDHYLNVPFDLSK 356 (728)
Q Consensus 283 ~g~~~~yvG~~~g~l~~~~~~a~~~--~~VlllDEidkl~~~~~~----~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~ 356 (728)
-..|-|..++++....+..... +-|+|+||++-+...... +..+.|-..+.. .+
T Consensus 257 ---Ga~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~r-----------------g~ 316 (898)
T KOG1051|consen 257 ---GAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLAR-----------------GG 316 (898)
T ss_pred ---CcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhc-----------------CC
Confidence 1256677778888877765432 228899999998765533 223333333331 12
Q ss_pred cEEEEecC-CCC----CCChhhhCCeeEEEcCCCCHHHHHHHHHH
Q 004834 357 VIFVATAN-RAQ----PIPPPLLDRMEVIELPGYTPEEKLRIAMR 396 (728)
Q Consensus 357 vi~I~TtN-~~~----~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~ 396 (728)
+.+|+||. ... .-+|+|-+||+.+.++-|+.+....|+..
T Consensus 317 l~~IGatT~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~ 361 (898)
T KOG1051|consen 317 LWCIGATTLETYRKCIEKDPALERRWQLVLVPIPSVENLSLILPG 361 (898)
T ss_pred eEEEecccHHHHHHHHhhCcchhhCcceeEeccCcccchhhhhhh
Confidence 45777554 221 46799999999888888887765555544
No 282
>PHA00729 NTP-binding motif containing protein
Probab=98.04 E-value=7.8e-06 Score=82.98 Aligned_cols=119 Identities=15% Similarity=0.172 Sum_probs=63.4
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhc---CCCCcEEEEeccc
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRV---GVCNPVMLLDEID 317 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a---~~~~~VlllDEid 317 (728)
.+++++||||||||++|.+||..++..+..+... +... ..+....++. ...+.+.+..+ ....+++++||+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~--~~~~-d~~~~~~fid--~~~Ll~~L~~a~~~~~~~dlLIIDd~G 92 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTK--DDAW-QYVQNSYFFE--LPDALEKIQDAIDNDYRIPLIIFDDAG 92 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccch--hhHH-hcCCcEEEEE--HHHHHHHHHHHHhcCCCCCEEEEeCCc
Confidence 3799999999999999999999886333222211 0000 0011000110 11222222211 1223688888853
Q ss_pred ccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHh
Q 004834 318 KTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRH 397 (728)
Q Consensus 318 kl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~ 397 (728)
--.... .+...+ + .....+.+++++|++++.|..+++++....++..
T Consensus 93 ~~~~~~------------------~wh~~~-----------~----~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 93 IWLSKY------------------VWYEDY-----------M----KTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred hhhccc------------------chhhhc-----------c----chHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 321110 000000 0 0112466888889998888888998888887764
No 283
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.02 E-value=1.3e-05 Score=85.84 Aligned_cols=74 Identities=24% Similarity=0.372 Sum_probs=45.0
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEec
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 315 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDE 315 (728)
.+.+++|+||||||||+|+.++|+.+ |.+...+.+..+. .++... + + .+.+.+.+.... ..+||+|||
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~--~~lk~~---~-~--~~~~~~~l~~l~-~~dlLiIDD 225 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFI--RELKNS---I-S--DGSVKEKIDAVK-EAPVLMLDD 225 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHH--HHHHHH---H-h--cCcHHHHHHHhc-CCCEEEEec
Confidence 45689999999999999999999998 4444444443321 112111 1 1 112222332222 346999999
Q ss_pred ccccCC
Q 004834 316 IDKTGS 321 (728)
Q Consensus 316 idkl~~ 321 (728)
+..-..
T Consensus 226 iG~e~~ 231 (306)
T PRK08939 226 IGAEQM 231 (306)
T ss_pred CCCccc
Confidence 987543
No 284
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.99 E-value=3.1e-05 Score=73.42 Aligned_cols=26 Identities=46% Similarity=0.684 Sum_probs=23.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCC
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRK 267 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~ 267 (728)
.+.+.||||+||||+++-+++.|...
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 58899999999999999999988433
No 285
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.98 E-value=9.8e-05 Score=82.13 Aligned_cols=38 Identities=29% Similarity=0.580 Sum_probs=32.3
Q ss_pred CCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 235 KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 235 ~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
.+.-+..++||+||+||||||+++.|++.+|..+....
T Consensus 105 ~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 105 TPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred ccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 34456678999999999999999999999998777655
No 286
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.96 E-value=2.9e-05 Score=97.52 Aligned_cols=147 Identities=23% Similarity=0.290 Sum_probs=109.6
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCc----cccccCCcchHHHHHhhcCCCCcEEEEecc
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR----RTYIGSMPGRLIDGLKRVGVCNPVMLLDEI 316 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~----~~yvG~~~g~l~~~~~~a~~~~~VlllDEi 316 (728)
..+||-||.|+|||++++-+|+.++..+++++--+..+..+++|.+ .+-.-...|.+.+++++ ...+++||+
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~----G~~~vlD~l 516 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRN----GDWIVLDEL 516 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHh----CCEEEeccc
Confidence 4589999999999999999999999999999998888888877732 12222344678888875 459999999
Q ss_pred cccCCCCCCCHHHHHHHhcCcccccccccCCCCeeec-CCCcEEEEecCCCC------CCChhhhCCeeEEEcCCCCHHH
Q 004834 317 DKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD-LSKVIFVATANRAQ------PIPPPLLDRMEVIELPGYTPEE 389 (728)
Q Consensus 317 dkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d-~~~vi~I~TtN~~~------~l~~~Ll~R~~vI~~~~~t~ee 389 (728)
+.++.++ .++|.+++|..+. -|.... .+.+. -.+.++++|-|.+. .+..+|++||..++|....+++
T Consensus 517 nla~~dv----L~aLnrllddnRe-l~ipe~-~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~rf~e~~f~~~~e~e 590 (1856)
T KOG1808|consen 517 NLAPHDV----LEALNRLLDDNRE-LFIPET-QRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNRFIELHFDDIGEEE 590 (1856)
T ss_pred cccchHH----HHHHHhhhhhhcc-cccccc-ceeeccCcchhhhhhccCccccchhhhhhhcccccchhhhhhhcCchh
Confidence 9998887 9999999997322 122221 22222 22456678989884 5778899999888888888887
Q ss_pred HHHHHHHh
Q 004834 390 KLRIAMRH 397 (728)
Q Consensus 390 ~~~Il~~~ 397 (728)
...|+...
T Consensus 591 ~~~i~~~~ 598 (1856)
T KOG1808|consen 591 LEEILEHR 598 (1856)
T ss_pred hhhhhccc
Confidence 77776554
No 287
>PF05729 NACHT: NACHT domain
Probab=97.90 E-value=7.9e-05 Score=71.64 Aligned_cols=141 Identities=20% Similarity=0.255 Sum_probs=71.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCC-------eE--EEecCCccchh------hhc-cCccccccCCcchHHHHHhhcC
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRK-------FI--RISLGGVKDEA------DIR-GHRRTYIGSMPGRLIDGLKRVG 305 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~-------~~--~i~~~~~~~~s------~l~-g~~~~yvG~~~g~l~~~~~~a~ 305 (728)
.++++|+||+|||++++.++..+... .+ .+.+....... ++. .......+.....+.......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~- 80 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN- 80 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC-
Confidence 57899999999999999999887221 11 22222221111 111 000000000001111112211
Q ss_pred CCCcEEEEecccccCCCCCC----CHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCC-ChhhhCCeeEE
Q 004834 306 VCNPVMLLDEIDKTGSDVRG----DPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPI-PPPLLDRMEVI 380 (728)
Q Consensus 306 ~~~~VlllDEidkl~~~~~~----~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l-~~~Ll~R~~vI 380 (728)
..-+++||-+|.+...... .....|.+++... -..++-++.|++....- ....+.....+
T Consensus 81 -~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~--------------~~~~~~liit~r~~~~~~~~~~~~~~~~~ 145 (166)
T PF05729_consen 81 -KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQA--------------LPPGVKLIITSRPRAFPDLRRRLKQAQIL 145 (166)
T ss_pred -CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhc--------------cCCCCeEEEEEcCChHHHHHHhcCCCcEE
Confidence 2238889999998874321 1122333444310 02334455555443320 11222222579
Q ss_pred EcCCCCHHHHHHHHHHhh
Q 004834 381 ELPGYTPEEKLRIAMRHL 398 (728)
Q Consensus 381 ~~~~~t~ee~~~Il~~~l 398 (728)
.+.+++.++..+++++++
T Consensus 146 ~l~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 146 ELEPFSEEDIKQYLRKYF 163 (166)
T ss_pred EECCCCHHHHHHHHHHHh
Confidence 999999999999998885
No 288
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=7.7e-05 Score=75.80 Aligned_cols=138 Identities=14% Similarity=0.062 Sum_probs=92.7
Q ss_pred CCEEEEEcCCC-CChhHHHHHHHHHhCCCeEEEecCCccchhhhccCc-----cccccCCc-chHHHHHhhcCCCCc--E
Q 004834 240 GPVLCFVGPPG-VGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR-----RTYIGSMP-GRLIDGLKRVGVCNP--V 310 (728)
Q Consensus 240 ~~~lLL~GPpG-tGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~-----~~yvG~~~-g~l~~~~~~a~~~~~--V 310 (728)
...+||.|..+ +||..++..++..+.... +..+...|...+.... ...++-.. ..+.+.+...+..++ |
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~--i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNS--IPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccC--cccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEE
Confidence 34689999998 999999999998884431 2222211211111000 01111000 123333333443323 9
Q ss_pred EEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHH
Q 004834 311 MLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEK 390 (728)
Q Consensus 311 lllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~ 390 (728)
++|+++|++.... +|+||..|++- ..+++||.+|..+..+.|.++|||..+.|+.+....-
T Consensus 93 iII~~ae~mt~~A----ANALLKtLEEP---------------P~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~~ 153 (263)
T PRK06581 93 AIIYSAELMNLNA----ANSCLKILEDA---------------PKNSYIFLITSRAASIISTIRSRCFKINVRSSILHAY 153 (263)
T ss_pred EEEechHHhCHHH----HHHHHHhhcCC---------------CCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHHH
Confidence 9999999998876 89999999863 3567888988899999999999999999999998777
Q ss_pred HHHHHHhh
Q 004834 391 LRIAMRHL 398 (728)
Q Consensus 391 ~~Il~~~l 398 (728)
.+.....+
T Consensus 154 ~e~~~~~~ 161 (263)
T PRK06581 154 NELYSQFI 161 (263)
T ss_pred HHHHHHhc
Confidence 77666654
No 289
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.001 Score=73.40 Aligned_cols=82 Identities=26% Similarity=0.330 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhC-------CCeEEEecCCccc--------hhhhccCccccccCCcchHHHHHhh
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALG-------RKFIRISLGGVKD--------EADIRGHRRTYIGSMPGRLIDGLKR 303 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~-------~~~~~i~~~~~~~--------~s~l~g~~~~yvG~~~g~l~~~~~~ 303 (728)
.+.+++|+||+|+||||++..+|..+. .....+++..++. ..++.|-+ -.+......+...+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp-v~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP-VKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc-eEeeCcHHHHHHHHHH
Confidence 356899999999999999999997763 3444455544321 22233332 1233334455555555
Q ss_pred cCCCCcEEEEecccccCCC
Q 004834 304 VGVCNPVMLLDEIDKTGSD 322 (728)
Q Consensus 304 a~~~~~VlllDEidkl~~~ 322 (728)
.. ...++++|++...+.+
T Consensus 252 ~~-~~DlVLIDTaGr~~~~ 269 (388)
T PRK12723 252 SK-DFDLVLVDTIGKSPKD 269 (388)
T ss_pred hC-CCCEEEEcCCCCCccC
Confidence 42 3469999999988653
No 290
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.75 E-value=0.0011 Score=70.44 Aligned_cols=75 Identities=31% Similarity=0.490 Sum_probs=44.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHh----C-CCeEEEecCCccc--------hhhhccCccccccCCcchHHHHHhhcC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASAL----G-RKFIRISLGGVKD--------EADIRGHRRTYIGSMPGRLIDGLKRVG 305 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l----~-~~~~~i~~~~~~~--------~s~l~g~~~~yvG~~~g~l~~~~~~a~ 305 (728)
.+.+++|+||+|+||||++..+|..+ + .....+++..+.. ..++.|.+ -++...+..+.+.+....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p-~~~~~~~~~l~~~l~~~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVP-VKVARDPKELRKALDRLR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCc-eeccCCHHHHHHHHHHcc
Confidence 45689999999999999999999876 2 3444555544321 11122221 122333445555555543
Q ss_pred CCCcEEEEec
Q 004834 306 VCNPVMLLDE 315 (728)
Q Consensus 306 ~~~~VlllDE 315 (728)
. ..++|+|.
T Consensus 272 ~-~d~vliDt 280 (282)
T TIGR03499 272 D-KDLILIDT 280 (282)
T ss_pred C-CCEEEEeC
Confidence 2 35777775
No 291
>PHA02774 E1; Provisional
Probab=97.71 E-value=0.00038 Score=79.10 Aligned_cols=120 Identities=23% Similarity=0.281 Sum_probs=69.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE-EEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFI-RISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEI 316 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~-~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEi 316 (728)
++...++|+||||||||++|.+|++.++...+ .++.. + .+ -.+.+.. ..+++|||+
T Consensus 432 PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~---s---------~F-------wLqpl~d----~ki~vlDD~ 488 (613)
T PHA02774 432 PKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSK---S---------HF-------WLQPLAD----AKIALLDDA 488 (613)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECc---c---------cc-------ccchhcc----CCEEEEecC
Confidence 44458999999999999999999999964332 23321 1 01 0111221 249999998
Q ss_pred cccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCCh---hhhCCeeEEEcCCC
Q 004834 317 DKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPP---PLLDRMEVIELPGY 385 (728)
Q Consensus 317 dkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~---~Ll~R~~vI~~~~~ 385 (728)
-...-+. ....|..+||.... -.|....-++.....-+|.|||..-.-++ .|.+|+..+.|+.+
T Consensus 489 t~~~w~y---~d~~Lrn~LdG~~v--~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~f~F~n~ 555 (613)
T PHA02774 489 THPCWDY---IDTYLRNALDGNPV--SIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITVFEFPNP 555 (613)
T ss_pred cchHHHH---HHHHHHHHcCCCcc--eeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEEEECCCC
Confidence 2221111 13467788886421 12221122333333456679996544333 45569988888865
No 292
>PRK10536 hypothetical protein; Provisional
Probab=97.70 E-value=0.0003 Score=72.78 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=43.0
Q ss_pred HHHcCCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHH-h-
Q 004834 187 LIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASA-L- 264 (728)
Q Consensus 187 ~~~~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~-l- 264 (728)
...++|+..+..+ ..+. ..+.+.......+..++. ....+++.||+|||||+||.++|.. +
T Consensus 38 ~~~~~p~~~~~~~-~~~~--------~~i~p~n~~Q~~~l~al~--------~~~lV~i~G~aGTGKT~La~a~a~~~l~ 100 (262)
T PRK10536 38 QMGGVEAIGMARD-SRDT--------SPILARNEAQAHYLKAIE--------SKQLIFATGEAGCGKTWISAAKAAEALI 100 (262)
T ss_pred hhccCCccccchh-hcCC--------ccccCCCHHHHHHHHHHh--------cCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4578898774443 3332 123444444444444442 1357899999999999999999984 3
Q ss_pred CCCeEEEec
Q 004834 265 GRKFIRISL 273 (728)
Q Consensus 265 ~~~~~~i~~ 273 (728)
...+-++.+
T Consensus 101 ~~~~~kIiI 109 (262)
T PRK10536 101 HKDVDRIIV 109 (262)
T ss_pred cCCeeEEEE
Confidence 433444443
No 293
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.67 E-value=5.3e-05 Score=82.99 Aligned_cols=125 Identities=24% Similarity=0.273 Sum_probs=69.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCC-CeEEEecCCccch--hhhccCccccccCCcchHHHHHhhcCCCCcEEEEe
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGR-KFIRISLGGVKDE--ADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLD 314 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~-~~~~i~~~~~~~~--s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllD 314 (728)
..+.++.|+||+|+|||+|.-.....+.. .-.++-+..+... ..+. .+.|. ...+............||+||
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~----~~~~~-~~~l~~va~~l~~~~~lLcfD 134 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLH----QLRGQ-DDPLPQVADELAKESRLLCFD 134 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHH----HHhCC-CccHHHHHHHHHhcCCEEEEe
Confidence 45679999999999999999999988854 2233332221110 0111 01111 112223322222234599999
Q ss_pred cccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC--------------CCChhhhCCeeEE
Q 004834 315 EIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ--------------PIPPPLLDRMEVI 380 (728)
Q Consensus 315 Eidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~--------------~l~~~Ll~R~~vI 380 (728)
|+.--.... .-.|-.+|+. +. -.++++|+|||.+- .+-+.|-+||+++
T Consensus 135 EF~V~DiaD----Amil~rLf~~-----l~---------~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv 196 (362)
T PF03969_consen 135 EFQVTDIAD----AMILKRLFEA-----LF---------KRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVV 196 (362)
T ss_pred eeeccchhH----HHHHHHHHHH-----HH---------HCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEE
Confidence 987653321 2222333331 11 14678999999862 1223345688888
Q ss_pred EcCCC
Q 004834 381 ELPGY 385 (728)
Q Consensus 381 ~~~~~ 385 (728)
.+.+.
T Consensus 197 ~ld~~ 201 (362)
T PF03969_consen 197 ELDGG 201 (362)
T ss_pred EecCC
Confidence 88876
No 294
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.60 E-value=0.00016 Score=69.20 Aligned_cols=38 Identities=26% Similarity=0.477 Sum_probs=32.6
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+++.||+|||||+|.|++|.........+.+.|
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~G 64 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEG 64 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcC
Confidence 57889999999999999999999999877766666554
No 295
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.60 E-value=0.0021 Score=72.14 Aligned_cols=94 Identities=27% Similarity=0.390 Sum_probs=55.3
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhC-----CCeEEEecCCccc--------hhhhccCccccccCCcchHHHHHhhcC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALG-----RKFIRISLGGVKD--------EADIRGHRRTYIGSMPGRLIDGLKRVG 305 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~-----~~~~~i~~~~~~~--------~s~l~g~~~~yvG~~~g~l~~~~~~a~ 305 (728)
.+.+++|+||+||||||++..||..+. .....+++..+.. ..++.|.+ -++...+..+...+....
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp-~~~~~~~~~l~~~l~~~~ 298 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIP-VEVVYDPKELAKALEQLR 298 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCc-eEccCCHHhHHHHHHHhC
Confidence 356899999999999999999886652 3445555554321 12222222 233344455666665543
Q ss_pred CCCcEEEEecccccCCCCCCCHHHHHHHhcC
Q 004834 306 VCNPVMLLDEIDKTGSDVRGDPASALLEVLD 336 (728)
Q Consensus 306 ~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld 336 (728)
...++|+|-....+.+. .....|.++++
T Consensus 299 -~~DlVlIDt~G~~~~d~--~~~~~L~~ll~ 326 (424)
T PRK05703 299 -DCDVILIDTAGRSQRDK--RLIEELKALIE 326 (424)
T ss_pred -CCCEEEEeCCCCCCCCH--HHHHHHHHHHh
Confidence 24699999876654332 11345555554
No 296
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.56 E-value=0.00041 Score=73.53 Aligned_cols=154 Identities=22% Similarity=0.256 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHH--hCCCe---EEEecCCccchhhh-------ccCc
Q 004834 219 VRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASA--LGRKF---IRISLGGVKDEADI-------RGHR 286 (728)
Q Consensus 219 ~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~--l~~~~---~~i~~~~~~~~s~l-------~g~~ 286 (728)
+.-+++|.+.+.... .....+.++|++|+|||+||+.+++. ....| +-++++...+...+ .+..
T Consensus 2 e~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 344566666665322 45668999999999999999999977 44433 23344433221111 1111
Q ss_pred -ccc-ccCCcchHHHHHhhc-CCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEec
Q 004834 287 -RTY-IGSMPGRLIDGLKRV-GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA 363 (728)
Q Consensus 287 -~~y-vG~~~g~l~~~~~~a-~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~Tt 363 (728)
... .......+...+... ...+.+++||.++.... ...+...+-. ...++-+|.||
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~------~~~l~~~~~~---------------~~~~~kilvTT 136 (287)
T PF00931_consen 78 DSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEED------LEELREPLPS---------------FSSGSKILVTT 136 (287)
T ss_dssp -STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHH------H-------HC---------------HHSS-EEEEEE
T ss_pred ccccccccccccccccchhhhccccceeeeeeeccccc------cccccccccc---------------ccccccccccc
Confidence 001 111112222333222 22245899999876430 1112221110 11234566777
Q ss_pred CCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhh
Q 004834 364 NRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHL 398 (728)
Q Consensus 364 N~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l 398 (728)
.... +...+-.....+.+.+++.++-.+++.++.
T Consensus 137 R~~~-v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 170 (287)
T PF00931_consen 137 RDRS-VAGSLGGTDKVIELEPLSEEEALELFKKRA 170 (287)
T ss_dssp SCGG-GGTTHHSCEEEEECSS--HHHHHHHHHHHH
T ss_pred cccc-cccccccccccccccccccccccccccccc
Confidence 6543 222222235689999999999999988874
No 297
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.54 E-value=7.2e-05 Score=68.48 Aligned_cols=30 Identities=43% Similarity=0.778 Sum_probs=25.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRI 271 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i 271 (728)
++++.||||+||||+|+.||+.++.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~ 30 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISM 30 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEe
Confidence 478999999999999999999997665443
No 298
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.53 E-value=0.00023 Score=71.45 Aligned_cols=104 Identities=25% Similarity=0.345 Sum_probs=55.3
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcC----------
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVG---------- 305 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~---------- 305 (728)
.....++.||||||||++++.+...+. ...+-+..++. ....+.. ..|.....+...+....
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~-Aa~~L~~----~~~~~a~Ti~~~l~~~~~~~~~~~~~~ 91 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNK-AAKELRE----KTGIEAQTIHSFLYRIPNGDDEGRPEL 91 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHH-HHHHHHH----HHTS-EEEHHHHTTEECCEECCSSCC-
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHH-HHHHHHH----hhCcchhhHHHHHhcCCcccccccccC
Confidence 345788999999999999999988773 34444444331 1111110 11212223333332221
Q ss_pred CCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC
Q 004834 306 VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA 366 (728)
Q Consensus 306 ~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~ 366 (728)
....|+++||+..+.... ...|+...... -.+++|++..+..
T Consensus 92 ~~~~vliVDEasmv~~~~----~~~ll~~~~~~---------------~~klilvGD~~QL 133 (196)
T PF13604_consen 92 PKKDVLIVDEASMVDSRQ----LARLLRLAKKS---------------GAKLILVGDPNQL 133 (196)
T ss_dssp TSTSEEEESSGGG-BHHH----HHHHHHHS-T----------------T-EEEEEE-TTSH
T ss_pred CcccEEEEecccccCHHH----HHHHHHHHHhc---------------CCEEEEECCcchh
Confidence 123499999999987543 55566655421 1346777777653
No 299
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=97.53 E-value=4.9e-05 Score=64.87 Aligned_cols=78 Identities=24% Similarity=0.396 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHhhch--HHHhhcCCCccccccCHHHHHHHHH-HcccccchHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 004834 385 YTPEEKLRIAMRHLIP--RVLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAALARAAAVKVAEQEQEQALP 461 (728)
Q Consensus 385 ~t~ee~~~Il~~~l~~--~~~~~~~~~~~~~~i~d~~l~~l~~-~~~~~~G~R~L~~~I~~l~r~a~~~~~~~~~~~~~~ 461 (728)
++.+...+|+...+.. +.+.++|+ .+.++++++++|++ .|..++|+|+|++.|++.+.
T Consensus 1 L~~~~l~~I~~~~l~~l~~~l~~~~i---~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~---------------- 61 (81)
T PF10431_consen 1 LSEEDLEKIADLQLKKLNERLKEKGI---ELEFDDAVVDYLAEKGYDPEYGARPLRRIIEREIE---------------- 61 (81)
T ss_dssp --HHHHHHHHHSHHHHHHHHHHHTTE---EEEE-HHHHHHHHHHHHHTTTTTTCHHHHHHHHHH----------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCC---eEEecHHHHHHHHHhCcccCCCHHHHHHHHHHHHH----------------
Confidence 4667888888887742 34444654 58999999999998 68899999999999999884
Q ss_pred CCccccccCCccccccccCCCceeE
Q 004834 462 SSKDVHRLGSPLLDNRLADGAEVEM 486 (728)
Q Consensus 462 ~~~~~~~~~~~~l~~~~~~~~~v~~ 486 (728)
+|+|+.++.|...+|++|.|
T Consensus 62 -----~~la~~il~~~~~~g~~v~v 81 (81)
T PF10431_consen 62 -----PPLADAILSGKIKEGDTVRV 81 (81)
T ss_dssp -----HHHHHHHHHSCSCTTCEEEE
T ss_pred -----HHHHHHHHcCCCCCcCEeeC
Confidence 46667778888888877654
No 300
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.52 E-value=6.4e-05 Score=81.28 Aligned_cols=46 Identities=33% Similarity=0.468 Sum_probs=38.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhcc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRG 284 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g 284 (728)
.+|..++|.|||||||||+.|+||.+.......|.++| .+...+..
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G-~~i~~lpp 74 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDG-EDITDVPP 74 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EECCCCCh
Confidence 56788999999999999999999999988889998888 34444433
No 301
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.51 E-value=0.00057 Score=72.10 Aligned_cols=166 Identities=23% Similarity=0.408 Sum_probs=97.2
Q ss_pred cchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHH-H--HHHhCCCeEEEecCCccch--hhhccCccc--
Q 004834 216 YGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASS-I--ASALGRKFIRISLGGVKDE--ADIRGHRRT-- 288 (728)
Q Consensus 216 ~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~Laka-l--A~~l~~~~~~i~~~~~~~~--s~l~g~~~~-- 288 (728)
+|..+-.+.+.+++...... ..+..++++||-|+|||.+.-. + ++..+.+++.+.+.|..-. -.+.|-.++
T Consensus 27 ~g~~~~~~~l~~~lkqt~~~--gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~ 104 (408)
T KOG2228|consen 27 FGVQDEQKHLSELLKQTILH--GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLA 104 (408)
T ss_pred eehHHHHHHHHHHHHHHHHh--cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHH
Confidence 34444455555555444332 3455799999999999987633 3 3366889988888774221 112222211
Q ss_pred --------cccCCcc---hHHHHHhhcCC--CCcE-EEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecC
Q 004834 289 --------YIGSMPG---RLIDGLKRVGV--CNPV-MLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDL 354 (728)
Q Consensus 289 --------yvG~~~g---~l~~~~~~a~~--~~~V-lllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~ 354 (728)
-.|.... .+.+++..... ..+| +++||+|-..+..+ +..|+.++|-.|..+
T Consensus 105 ~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~r---QtllYnlfDisqs~r------------ 169 (408)
T KOG2228|consen 105 LELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSR---QTLLYNLFDISQSAR------------ 169 (408)
T ss_pred HHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchh---hHHHHHHHHHHhhcC------------
Confidence 1232222 23334433221 2224 55789998876543 788899998654321
Q ss_pred CCcEEEEecCCCC---CCChhhhCCee--EEE-cCCCCHHHHHHHHHHhh
Q 004834 355 SKVIFVATANRAQ---PIPPPLLDRME--VIE-LPGYTPEEKLRIAMRHL 398 (728)
Q Consensus 355 ~~vi~I~TtN~~~---~l~~~Ll~R~~--vI~-~~~~t~ee~~~Il~~~l 398 (728)
..+.+|+.|.+.+ .+-...-+||. +|+ +++...++-..+.+..+
T Consensus 170 ~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 170 APICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred CCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 2346667555544 56677778993 455 45566688888888765
No 302
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.50 E-value=0.00025 Score=69.31 Aligned_cols=23 Identities=43% Similarity=0.813 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 004834 242 VLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l 264 (728)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 57899999999999999999988
No 303
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.48 E-value=0.00043 Score=83.01 Aligned_cols=154 Identities=23% Similarity=0.287 Sum_probs=101.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCC--cchHHHHHhhc------CCCCcEEEE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSM--PGRLIDGLKRV------GVCNPVMLL 313 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~--~g~l~~~~~~a------~~~~~Vlll 313 (728)
.++++||||+|||+.+...|..++...+.++.+..++...+... +|.. ...+...+... ....-||++
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~----~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~ 434 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNK----LGNATSSHSIKGSKKKKGNRQSLNSDHFLILM 434 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhh----hhccccccchhhhhcccccccccccceeEEEE
Confidence 36899999999999999999999999999987765543332211 1110 01122222110 011229999
Q ss_pred ecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCe-eEEEcCCCCHHHHHH
Q 004834 314 DEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRM-EVIELPGYTPEEKLR 392 (728)
Q Consensus 314 DEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~-~vI~~~~~t~ee~~~ 392 (728)
||+|-+....+| .+..+-++... +..=+|+|+|....-+...+.|. ..+.|+.|+.+.+..
T Consensus 435 devD~~~~~dRg-~v~~l~~l~~k-----------------s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ 496 (871)
T KOG1968|consen 435 DEVDGMFGEDRG-GVSKLSSLCKK-----------------SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRS 496 (871)
T ss_pred eccccccchhhh-hHHHHHHHHHh-----------------ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHh
Confidence 999999873332 24555555431 22346789998887666566665 469999999888776
Q ss_pred HHHHhhchHHHhhcCCCccccccCHHHHHHHHHHc
Q 004834 393 IAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRY 427 (728)
Q Consensus 393 Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~ 427 (728)
-+... +....+.+++..++.++..+
T Consensus 497 ri~si----------~~se~~ki~~~~l~~~s~~~ 521 (871)
T KOG1968|consen 497 RIMSI----------CKSEGIKISDDVLEEISKLS 521 (871)
T ss_pred hhhhh----------hcccceecCcHHHHHHHHhc
Confidence 55555 33456789999999999866
No 304
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.46 E-value=0.0029 Score=69.05 Aligned_cols=82 Identities=17% Similarity=0.321 Sum_probs=52.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccc--hhhh------ccCccccccCCcchHHHHHhhcC-
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKD--EADI------RGHRRTYIGSMPGRLIDGLKRVG- 305 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~--~s~l------~g~~~~yvG~~~g~l~~~~~~a~- 305 (728)
.++.+++|+||+||||||++..+|..+ +.+...+++..+.. ..++ .+. +-++...+..+..++....
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgv-pv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV-ELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCC-CEEecCCHHHHHHHHHHHHh
Confidence 356789999999999999999999776 34455566554433 1122 222 2234455566666665543
Q ss_pred -CCCcEEEEecccccC
Q 004834 306 -VCNPVMLLDEIDKTG 320 (728)
Q Consensus 306 -~~~~VlllDEidkl~ 320 (728)
....++|+|=....+
T Consensus 283 ~~~~D~VLIDTAGr~~ 298 (407)
T PRK12726 283 VNCVDHILIDTVGRNY 298 (407)
T ss_pred cCCCCEEEEECCCCCc
Confidence 223689998766654
No 305
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.45 E-value=0.00026 Score=72.10 Aligned_cols=39 Identities=28% Similarity=0.446 Sum_probs=33.6
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 276 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~ 276 (728)
..|..++|+|||||||||+.|.|-+.+......+.+.|.
T Consensus 25 ~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~ 63 (309)
T COG1125 25 EEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGE 63 (309)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCe
Confidence 567889999999999999999999999887777776653
No 306
>PRK07261 topology modulation protein; Provisional
Probab=97.45 E-value=0.00092 Score=65.60 Aligned_cols=30 Identities=20% Similarity=0.462 Sum_probs=25.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRI 271 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i 271 (728)
.++++|+||+||||+|+.|+..++.+.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~ 31 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHL 31 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEec
Confidence 478999999999999999999887765543
No 307
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.0034 Score=68.85 Aligned_cols=82 Identities=26% Similarity=0.347 Sum_probs=47.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh----C-CCeEEEecCCcc--------chhhhccCccccccCCcchHHHHHhhc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL----G-RKFIRISLGGVK--------DEADIRGHRRTYIGSMPGRLIDGLKRV 304 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l----~-~~~~~i~~~~~~--------~~s~l~g~~~~yvG~~~g~l~~~~~~a 304 (728)
..+.+++|+||||+||||++..||..+ + .....+....+. ...++.|.+- +.-...+.+...+...
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~-~~~~~~~~l~~~l~~l 213 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPV-HAVKDGGDLQLALAEL 213 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCce-EecCCcccHHHHHHHh
Confidence 456799999999999999999999764 2 123334333321 1112223221 1222234455555443
Q ss_pred CCCCcEEEEecccccCC
Q 004834 305 GVCNPVMLLDEIDKTGS 321 (728)
Q Consensus 305 ~~~~~VlllDEidkl~~ 321 (728)
. ...++|||.......
T Consensus 214 ~-~~DlVLIDTaG~~~~ 229 (374)
T PRK14722 214 R-NKHMVLIDTIGMSQR 229 (374)
T ss_pred c-CCCEEEEcCCCCCcc
Confidence 3 236999999876544
No 308
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.00045 Score=75.47 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCcc--chhhhccC-----ccccccCCcchHHHHHhhcCC--
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVK--DEADIRGH-----RRTYIGSMPGRLIDGLKRVGV-- 306 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~--~~s~l~g~-----~~~yvG~~~g~l~~~~~~a~~-- 306 (728)
.+..++|+||+|+||||++..||..+. .....+++..++ ...++... .+-++...+..+.+++.....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 346899999999999999999998773 345555554433 22222221 112223445566666655432
Q ss_pred CCcEEEEecccccCC
Q 004834 307 CNPVMLLDEIDKTGS 321 (728)
Q Consensus 307 ~~~VlllDEidkl~~ 321 (728)
...++|+|-....+.
T Consensus 320 ~~DvVLIDTaGRs~k 334 (436)
T PRK11889 320 RVDYILIDTAGKNYR 334 (436)
T ss_pred CCCEEEEeCccccCc
Confidence 236899997776553
No 309
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.39 E-value=0.001 Score=66.88 Aligned_cols=115 Identities=20% Similarity=0.314 Sum_probs=69.8
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecccccC
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTG 320 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~ 320 (728)
..++|.|+-|+|||+..+.|+....... ... ...+.....+.. +-++.+||++.+.
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~~~d~----~~~----------------~~~kd~~~~l~~----~~iveldEl~~~~ 108 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEYFSDS----IND----------------FDDKDFLEQLQG----KWIVELDELDGLS 108 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHhccCc----ccc----------------CCCcHHHHHHHH----hHheeHHHHhhcc
Confidence 3788999999999999999965421100 000 001122223322 2488999999987
Q ss_pred CCCCCCHHHHHHHhcCcccccccccCCCCeeec-CCCcEEEEecCCCCCCChhh-hCCeeEEEcCC
Q 004834 321 SDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD-LSKVIFVATANRAQPIPPPL-LDRMEVIELPG 384 (728)
Q Consensus 321 ~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d-~~~vi~I~TtN~~~~l~~~L-l~R~~vI~~~~ 384 (728)
... .+.|-.++-.. ...+...|.....+ .+.++||+|||..+.+.++- -+||-+|++..
T Consensus 109 k~~----~~~lK~~iT~~-~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 109 KKD----VEALKSFITRR-TDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred hhh----HHHHHHHhccc-ceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 544 56666666532 23333344333333 34578999999988665543 35887777766
No 310
>PHA02624 large T antigen; Provisional
Probab=97.37 E-value=0.00067 Score=77.48 Aligned_cols=124 Identities=18% Similarity=0.204 Sum_probs=69.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEeccc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEID 317 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEid 317 (728)
++...++|+||||||||+++.+|++.++.....++.....+...+ +. +. ..-+.+||++-
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~FwL------------~p----l~----D~~~~l~dD~t 488 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFEL------------GC----AI----DQFMVVFEDVK 488 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHHh------------hh----hh----hceEEEeeecc
Confidence 556689999999999999999999999655544543321111111 01 11 12388899885
Q ss_pred ccCC-------CCCCCHHHHHHHhcCcc-cccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCee-EEEcCC
Q 004834 318 KTGS-------DVRGDPASALLEVLDPE-QNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRME-VIELPG 384 (728)
Q Consensus 318 kl~~-------~~~~~~~~~Ll~~Ld~~-~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~-vI~~~~ 384 (728)
...- ...-|...-|...||+. ...-=..|..-+..-+. -.|.|+|.- .||..+.-||. ++.|..
T Consensus 489 ~~~~~~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~P--PlliT~Ney-~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 489 GQPADNKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFP--PGIVTMNEY-LIPQTVKARFAKVLDFKP 561 (647)
T ss_pred ccccccccCCcccccchhhHHHhhcCCCCccccchhccCchhccCC--CeEEeecCc-ccchhHHHHHHHhccccc
Confidence 4332 11112235677777753 11100111111111122 234588865 48888999996 677764
No 311
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.37 E-value=0.00018 Score=70.07 Aligned_cols=33 Identities=33% Similarity=0.683 Sum_probs=29.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEE
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRI 271 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i 271 (728)
++..++|+|||||||||+|+.+|+.++.+++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 456899999999999999999999998877743
No 312
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.36 E-value=0.00034 Score=70.34 Aligned_cols=25 Identities=20% Similarity=0.541 Sum_probs=22.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
.++++||+|+||||++++++..+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5889999999999999999988853
No 313
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.31 E-value=0.00031 Score=70.37 Aligned_cols=24 Identities=46% Similarity=0.652 Sum_probs=22.3
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHh
Q 004834 241 PVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.+.|+.|||||||||+.+-||+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHh
Confidence 368999999999999999999988
No 314
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.0002 Score=66.99 Aligned_cols=34 Identities=35% Similarity=0.672 Sum_probs=30.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEE
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRI 271 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i 271 (728)
..+|++|++|-|||||||++..||..++.+++.+
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 5678999999999999999999999998877654
No 315
>PRK04296 thymidine kinase; Provisional
Probab=97.28 E-value=0.0012 Score=65.99 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
|...+++||||+||||++..++..+
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 3467899999999999998888766
No 316
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.28 E-value=0.00033 Score=66.72 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=32.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|.++++.||+|+|||||+++++..+...-..+.+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~ 61 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS 61 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECC
Confidence 57789999999999999999999998876666666655
No 317
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.27 E-value=0.002 Score=69.24 Aligned_cols=155 Identities=16% Similarity=0.180 Sum_probs=84.3
Q ss_pred HhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccc
Q 004834 209 ERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRT 288 (728)
Q Consensus 209 ~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~ 288 (728)
+-|++-.-|.++.++.+.+++.............++|+|+.|+|||++...|...+|.....+..+- ...++-+++
T Consensus 45 ~~L~~~~~~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~--~~~~~~~~~-- 120 (304)
T TIGR01613 45 GFLLETFGGDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASL--KMNEFQEHR-- 120 (304)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcch--hhhhccCCC--
Confidence 3444434455667788888877655443445567889999999999999999999976542211110 001110000
Q ss_pred cccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCC-CcEEEEecCCCC
Q 004834 289 YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS-KVIFVATANRAQ 367 (728)
Q Consensus 289 yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~-~vi~I~TtN~~~ 367 (728)
. .+ ..+. ...+++.||++.-.... .+.|-.+....... ......-++++. ...+|.+||..-
T Consensus 121 -----f-~~-a~l~----gk~l~~~~E~~~~~~~~----~~~lK~lt~gd~i~--~~~k~k~~~~~~~~~~~i~~tN~~P 183 (304)
T TIGR01613 121 -----F-GL-ARLE----GKRAVIGDEVQKGYRDD----ESTFKSLTGGDTIT--ARFKNKDPFEFTPKFTLVQSTNHLP 183 (304)
T ss_pred -----c-hh-hhhc----CCEEEEecCCCCCcccc----HHhhhhhhcCCeEE--eecccCCcEEEEEeeEEEEEcCCCC
Confidence 0 01 1111 12488999987532221 45555554321111 011111122222 345667777754
Q ss_pred CC---ChhhhCCeeEEEcCC
Q 004834 368 PI---PPPLLDRMEVIELPG 384 (728)
Q Consensus 368 ~l---~~~Ll~R~~vI~~~~ 384 (728)
.+ +.++.+|+-+|+|+.
T Consensus 184 ~~~~~~~a~~RR~~vi~f~~ 203 (304)
T TIGR01613 184 RIRGFDGGIKRRLRIIPFTK 203 (304)
T ss_pred ccCCCChhheeeEEEEeccC
Confidence 44 578999999888864
No 318
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.26 E-value=0.00045 Score=83.73 Aligned_cols=153 Identities=15% Similarity=0.134 Sum_probs=88.1
Q ss_pred CCCEEEEEcCCCCChhHHH-HHHHHHhCCCeEEEecCCc-cchhhh---ccCccccccCCcchHHHHHhhcCCCCcEEEE
Q 004834 239 RGPVLCFVGPPGVGKTSLA-SSIASALGRKFIRISLGGV-KDEADI---RGHRRTYIGSMPGRLIDGLKRVGVCNPVMLL 313 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~La-kalA~~l~~~~~~i~~~~~-~~~s~l---~g~~~~yvG~~~g~l~~~~~~a~~~~~Vlll 313 (728)
....++++||||+|||.|. -++-..+...+.-++++-- .+++.+ ..+.. |+-.. | ......+.-..+.|+|.
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~-yy~~t-g-~~~l~PK~~vK~lVLFc 1569 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETE-YYPNT-G-VVRLYPKPVVKDLVLFC 1569 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhce-eeccC-C-eEEEccCcchhheEEEe
Confidence 3457999999999999853 4454555556666665542 222222 11111 11111 1 11111222223449999
Q ss_pred ecccccCCCCC---CCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC-----CCChhhhCCeeEEEcCCC
Q 004834 314 DEIDKTGSDVR---GDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-----PIPPPLLDRMEVIELPGY 385 (728)
Q Consensus 314 DEidkl~~~~~---~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~-----~l~~~Ll~R~~vI~~~~~ 385 (728)
|||+ +..... .+..--|.++++. .+|........+...++++.+++|++. .++..|++|--++.+..|
T Consensus 1570 DeIn-Lp~~~~y~~~~vI~FlR~l~e~---QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~v~vf~~yp 1645 (3164)
T COG5245 1570 DEIN-LPYGFEYYPPTVIVFLRPLVER---QGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKPVFVFCCYP 1645 (3164)
T ss_pred eccC-CccccccCCCceEEeeHHHHHh---cccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCceEEEecCc
Confidence 9999 443321 1112223355553 345544444556677889999999986 466788888777888888
Q ss_pred CHHHHHHHHHHhh
Q 004834 386 TPEEKLRIAMRHL 398 (728)
Q Consensus 386 t~ee~~~Il~~~l 398 (728)
....+..|...++
T Consensus 1646 e~~SL~~Iyea~l 1658 (3164)
T COG5245 1646 ELASLRNIYEAVL 1658 (3164)
T ss_pred chhhHHHHHHHHH
Confidence 7777777766544
No 319
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.00031 Score=67.67 Aligned_cols=39 Identities=33% Similarity=0.529 Sum_probs=33.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 276 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~ 276 (728)
.++..++++||+|+|||||+++|+..+.....++.+.+.
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~ 61 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGK 61 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCE
Confidence 567899999999999999999999988776777777663
No 320
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.23 E-value=0.00045 Score=67.17 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|.||+|+|||||.+.|+.........+.+.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g 61 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG 61 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 57889999999999999999999998866666676665
No 321
>PRK08118 topology modulation protein; Reviewed
Probab=97.23 E-value=0.00029 Score=68.91 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=27.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
.++++||||+||||+|+.|++.++.+++.++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 4889999999999999999999998877654
No 322
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.22 E-value=0.00053 Score=67.67 Aligned_cols=38 Identities=32% Similarity=0.388 Sum_probs=32.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.++..+.|.||+|+|||||++.|+..+......+.+.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 60 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG 60 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC
Confidence 57889999999999999999999998876667776655
No 323
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.20 E-value=0.0083 Score=67.95 Aligned_cols=26 Identities=42% Similarity=0.795 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.+.+++|+||+|+||||++..||..+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHH
Confidence 46789999999999999999999876
No 324
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.20 E-value=0.017 Score=59.27 Aligned_cols=186 Identities=19% Similarity=0.240 Sum_probs=99.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEE-ecCCccc----------hhhhccCccccccCCc----chHHHHHhh
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRI-SLGGVKD----------EADIRGHRRTYIGSMP----GRLIDGLKR 303 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i-~~~~~~~----------~s~l~g~~~~yvG~~~----g~l~~~~~~ 303 (728)
....+.++|+.|+|||.+.|++...++..-+.+ .... +. .+++...++.-+.... ..+.+.+.+
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~-~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~ 128 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDK-PTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKK 128 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecC-cchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHh
Confidence 344788999999999999998888876543322 2111 11 1122221111111110 112222222
Q ss_pred cCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCC-C---hhhhCCeeE
Q 004834 304 VGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPI-P---PPLLDRMEV 379 (728)
Q Consensus 304 a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l-~---~~Ll~R~~v 379 (728)
+....++++||.+-+..+. ...|.-+.+-. . .+.+ .-.++.|+-...-..+ . ..+-.|+++
T Consensus 129 -g~r~v~l~vdEah~L~~~~----le~Lrll~nl~-~-~~~~--------~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~i 193 (269)
T COG3267 129 -GKRPVVLMVDEAHDLNDSA----LEALRLLTNLE-E-DSSK--------LLSIVLIGQPKLRPRLRLPVLRELEQRIDI 193 (269)
T ss_pred -CCCCeEEeehhHhhhChhH----HHHHHHHHhhc-c-cccC--------ceeeeecCCcccchhhchHHHHhhhheEEE
Confidence 2233589999999987664 44433332211 0 1111 1123343311111111 1 223359997
Q ss_pred -EEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHH
Q 004834 380 -IELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAE 453 (728)
Q Consensus 380 -I~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~a~~~~~~ 453 (728)
|.+++++.++-...++..|.. .+ ....-++++++..+....-+ .-+.|..+|..|......
T Consensus 194 r~~l~P~~~~~t~~yl~~~Le~-----a~--~~~~l~~~~a~~~i~~~sqg------~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 194 RIELPPLTEAETGLYLRHRLEG-----AG--LPEPLFSDDALLLIHEASQG------IPRLINNLATLALDAAYS 255 (269)
T ss_pred EEecCCcChHHHHHHHHHHHhc-----cC--CCcccCChhHHHHHHHHhcc------chHHHHHHHHHHHHHHHH
Confidence 999999999888888777532 22 23356789999888764322 227888888876554443
No 325
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.20 E-value=0.00028 Score=69.39 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=37.4
Q ss_pred ccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCC---eEEEecCC
Q 004834 215 HYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK---FIRISLGG 275 (728)
Q Consensus 215 i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~---~~~i~~~~ 275 (728)
++|.++..+++..++. . .....+++++++||||+|||++++.+...+..+ ++.+.+..
T Consensus 2 fvgR~~e~~~l~~~l~-~--~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~ 62 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-A--AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDD 62 (185)
T ss_dssp -TT-HHHHHHHHHTTG-G--TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEET
T ss_pred CCCHHHHHHHHHHHHH-H--HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 5788888898888875 2 223556789999999999999999988877443 55555544
No 326
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.17 E-value=0.0047 Score=66.76 Aligned_cols=117 Identities=16% Similarity=0.329 Sum_probs=68.8
Q ss_pred EEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC---------------CCChhhh
Q 004834 310 VMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ---------------PIPPPLL 374 (728)
Q Consensus 310 VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~---------------~l~~~Ll 374 (728)
|++|||+|++.++. ...+++.+. .+ +++.+++||.+.+... ......+
T Consensus 175 ViiIDdLDR~~~~~----i~~~l~~ik-----~~--------~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yL 237 (325)
T PF07693_consen 175 VIIIDDLDRCSPEE----IVELLEAIK-----LL--------LDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYL 237 (325)
T ss_pred EEEEcchhcCCcHH----HHHHHHHHH-----Hh--------cCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHH
Confidence 88999999998765 555666553 12 2457888888877531 2345667
Q ss_pred CCe-e-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCcccccc----------CHHHHHHHHHHcc-cccchHHHHHHHH
Q 004834 375 DRM-E-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQI----------PEAMVKLVIQRYT-REAGVRNLERNLA 441 (728)
Q Consensus 375 ~R~-~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i----------~d~~l~~l~~~~~-~~~G~R~L~~~I~ 441 (728)
++| + .+.+|+++..+....+...+.. ...........-.+ ....+..+...+. .....|.++|.+.
T Consensus 238 eKiiq~~~~lP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~npR~ikr~iN 316 (325)
T PF07693_consen 238 EKIIQVPFSLPPPSPSDLERYLNELLES-LESETNESDDIETLSNSASNENLRIDEILNDIIDSIDFSIGNPRDIKRFIN 316 (325)
T ss_pred HhhcCeEEEeCCCCHHHHHHHHHHHHHH-hhhccccccchhhhhhcchhhhhhHHHHHHHHHHhhhhcCCCHHHHHHHHH
Confidence 776 4 4999999998888777776421 11111110000001 1234444444443 2356788888877
Q ss_pred HHH
Q 004834 442 ALA 444 (728)
Q Consensus 442 ~l~ 444 (728)
.+.
T Consensus 317 ~~~ 319 (325)
T PF07693_consen 317 SLS 319 (325)
T ss_pred HHH
Confidence 664
No 327
>PRK13947 shikimate kinase; Provisional
Probab=97.13 E-value=0.00039 Score=67.82 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=28.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
+++++|+|||||||+++.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999987654
No 328
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.13 E-value=0.0033 Score=79.58 Aligned_cols=52 Identities=25% Similarity=0.442 Sum_probs=40.9
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKF 268 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~ 268 (728)
.+.+|.+...+.+...+... ...+..+.++||+|+||||||+++++.+...|
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F 235 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFSRLSRQF 235 (1153)
T ss_pred ccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHHHHhhcC
Confidence 35789998888888766432 24567899999999999999999988875543
No 329
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.13 E-value=0.00035 Score=67.82 Aligned_cols=32 Identities=28% Similarity=0.493 Sum_probs=29.2
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
+++.|+|++|+||||+.+.+|+.|+.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46889999999999999999999999998665
No 330
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.13 E-value=0.00052 Score=67.33 Aligned_cols=38 Identities=37% Similarity=0.572 Sum_probs=31.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.++||+|+|||||++.|+..+......+.+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g 63 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDG 63 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECC
Confidence 46789999999999999999999998866556666555
No 331
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.12 E-value=0.001 Score=69.20 Aligned_cols=31 Identities=42% Similarity=0.621 Sum_probs=27.6
Q ss_pred CCCCCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 236 PDARGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 236 ~~~~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
|-.+|..++++||+|||||||++.+++.+..
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 4467889999999999999999999998865
No 332
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.12 E-value=0.00033 Score=75.44 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=35.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
..|..+.|+||+||||||+.+.||......-..|.++|
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g 64 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDG 64 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 56788999999999999999999999988889998887
No 333
>PRK00625 shikimate kinase; Provisional
Probab=97.12 E-value=0.00042 Score=68.13 Aligned_cols=31 Identities=32% Similarity=0.507 Sum_probs=28.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
+++|+|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5889999999999999999999998887665
No 334
>PRK03839 putative kinase; Provisional
Probab=97.11 E-value=0.00042 Score=68.41 Aligned_cols=30 Identities=33% Similarity=0.801 Sum_probs=26.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRI 271 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i 271 (728)
.++|.|+||+||||+++.+|+.++.+++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~ 31 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDL 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 478999999999999999999999887654
No 335
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.10 E-value=0.00045 Score=67.95 Aligned_cols=34 Identities=24% Similarity=0.542 Sum_probs=29.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEec
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 273 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~ 273 (728)
+..++|.||||+||||+|+.+++.++.+++.+..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 5689999999999999999999998877765543
No 336
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.09 E-value=0.0016 Score=64.75 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=28.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEec
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 273 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~ 273 (728)
..+..++++||+|+||||++++++..+......+.+
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~i 58 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITI 58 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEE
Confidence 356789999999999999999999988654444443
No 337
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.09 E-value=0.00055 Score=64.46 Aligned_cols=30 Identities=43% Similarity=0.785 Sum_probs=25.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEEec
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRISL 273 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~ 273 (728)
.++++||||+||||+|+.+++.++ ...++.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~--~~~i~~ 30 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG--AVVISQ 30 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST--EEEEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC--CEEEeH
Confidence 478999999999999999999987 444443
No 338
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.09 E-value=0.00068 Score=64.69 Aligned_cols=33 Identities=30% Similarity=0.574 Sum_probs=25.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecC
Q 004834 242 VLCFVGPPGVGKTSLASSIASALG---RKFIRISLG 274 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~ 274 (728)
+++++||||+|||+++..++..+. .+...+++.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 368999999999999999998874 344444443
No 339
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.08 E-value=0.00059 Score=66.83 Aligned_cols=38 Identities=26% Similarity=0.419 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+++.||+|+|||||.+.|+..+......+.+.+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g 63 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDG 63 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECC
Confidence 57889999999999999999999998866566666655
No 340
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.04 E-value=0.00052 Score=65.51 Aligned_cols=31 Identities=32% Similarity=0.609 Sum_probs=27.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
+++|+||||+||||+|+.+|+.++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3789999999999999999999988877543
No 341
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.00 E-value=0.0015 Score=71.42 Aligned_cols=28 Identities=21% Similarity=0.466 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
++..++++||+|+||||+++++.+.+..
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 3567999999999999999999988754
No 342
>PRK14530 adenylate kinase; Provisional
Probab=96.99 E-value=0.00066 Score=69.11 Aligned_cols=30 Identities=30% Similarity=0.666 Sum_probs=26.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
++.++|+||||+||||+++.||+.++.+++
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i 32 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHV 32 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 457999999999999999999999986655
No 343
>PRK14974 cell division protein FtsY; Provisional
Probab=96.99 E-value=0.0071 Score=65.67 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
++..++|+||||+||||++..+|..+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999998874
No 344
>PRK13695 putative NTPase; Provisional
Probab=96.97 E-value=0.003 Score=61.97 Aligned_cols=23 Identities=52% Similarity=0.829 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 004834 242 VLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l 264 (728)
.++|.|+||+||||+++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988776
No 345
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.96 E-value=0.001 Score=67.68 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHH
Q 004834 240 GPVLCFVGPPGVGKTSLASSIA 261 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA 261 (728)
+..+||||+||+||||+|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 4569999999999999999986
No 346
>PHA01747 putative ATP-dependent protease
Probab=96.96 E-value=0.0019 Score=69.30 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccc-cccCCcchHHHHHhhcCCCCcEEEEeccc
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRT-YIGSMPGRLIDGLKRVGVCNPVMLLDEID 317 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~-yvG~~~g~l~~~~~~a~~~~~VlllDEid 317 (728)
++-+++=.||.|||||++-+-+....+... .+|..+.+.+....++ -+|.. ....++.+|||.
T Consensus 189 ~NyNliELgPRGTGKS~~f~eis~fsp~~i----SGG~~TvA~LFyN~~t~~~GLV------------g~~D~VaFDEVa 252 (425)
T PHA01747 189 RPVHIIELSNRGTGKTTTFVILQELFNFRY----YTEPPTYANLVYDAKTNALGLV------------FLSNGLIFDEIQ 252 (425)
T ss_pred CCeeEEEecCCCCChhhHHHHhhhcCCcee----eCCCCchHHheEecCCCceeEE------------eeccEEEEEccc
Confidence 344888899999999999998876543222 5666676666533211 11110 013599999999
Q ss_pred ccCCCCCCCHHHHHHHhcCccc
Q 004834 318 KTGSDVRGDPASALLEVLDPEQ 339 (728)
Q Consensus 318 kl~~~~~~~~~~~Ll~~Ld~~~ 339 (728)
....+...+..+.|..-|+.+.
T Consensus 253 ~i~f~~~kdiv~IMKdYMesG~ 274 (425)
T PHA01747 253 TWKDSNMRAINSTLSTGMENCV 274 (425)
T ss_pred cccCCCHHHHHHHHHHHhhcce
Confidence 9876442334566666666544
No 347
>PRK06696 uridine kinase; Validated
Probab=96.95 E-value=0.0019 Score=66.21 Aligned_cols=43 Identities=28% Similarity=0.437 Sum_probs=34.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccchh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEA 280 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~~s 280 (728)
..+..|.+.|+||+||||+|+.|++.+ +.+.+.+.+.++....
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~ 65 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPR 65 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCH
Confidence 345689999999999999999999999 5566777777765433
No 348
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.94 E-value=0.0007 Score=70.22 Aligned_cols=38 Identities=32% Similarity=0.534 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
++|..+++.||+|||||||.|++++.+......|.+.|
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g 63 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDG 63 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECC
Confidence 56889999999999999999999999988777777776
No 349
>PRK13949 shikimate kinase; Provisional
Probab=96.94 E-value=0.00072 Score=66.25 Aligned_cols=31 Identities=39% Similarity=0.648 Sum_probs=27.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
.++|+||||+||||+++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5889999999999999999999998877644
No 350
>PRK08233 hypothetical protein; Provisional
Probab=96.93 E-value=0.0018 Score=63.65 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
+..+.+.|+||+||||+|+.|+..++
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35788999999999999999999985
No 351
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.93 E-value=0.0014 Score=64.68 Aligned_cols=38 Identities=32% Similarity=0.532 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++|.||+|+|||||++.|+..+...-..+.+.+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g 60 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 57889999999999999999999998765555665554
No 352
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.012 Score=69.93 Aligned_cols=82 Identities=26% Similarity=0.380 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHh----CC-CeEEEecCCcc--------chhhhccCccccccCCcchHHHHHhhcC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASAL----GR-KFIRISLGGVK--------DEADIRGHRRTYIGSMPGRLIDGLKRVG 305 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l----~~-~~~~i~~~~~~--------~~s~l~g~~~~yvG~~~g~l~~~~~~a~ 305 (728)
++.+++|+||+|+||||++..||..+ +. ....+....+. ...++.|.+ -++...+..+.+++....
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvp-v~~~~~~~~l~~al~~~~ 262 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVP-VHAVKDAADLRFALAALG 262 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCC-ccccCCHHHHHHHHHHhc
Confidence 45689999999999999999999765 22 22333333322 122333432 234445666777776655
Q ss_pred CCCcEEEEecccccCCC
Q 004834 306 VCNPVMLLDEIDKTGSD 322 (728)
Q Consensus 306 ~~~~VlllDEidkl~~~ 322 (728)
. ..++|||=....+.+
T Consensus 263 ~-~D~VLIDTAGRs~~d 278 (767)
T PRK14723 263 D-KHLVLIDTVGMSQRD 278 (767)
T ss_pred C-CCEEEEeCCCCCccC
Confidence 3 369999977665543
No 353
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.90 E-value=0.0016 Score=63.58 Aligned_cols=37 Identities=32% Similarity=0.414 Sum_probs=30.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLG 274 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~ 274 (728)
.+|..+++.||+|+|||||++.++..+......+.+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 61 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMP 61 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 5678999999999999999999999876555555443
No 354
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.88 E-value=0.001 Score=65.69 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=25.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKF 268 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~ 268 (728)
.+.+++.||||+||||+++.+++.++...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~ 31 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTH 31 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 46899999999999999999999986543
No 355
>PRK13948 shikimate kinase; Provisional
Probab=96.87 E-value=0.0011 Score=65.66 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=31.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
.++..++|+|++|+||||+++.+|+.++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45668999999999999999999999999998665
No 356
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.87 E-value=0.0038 Score=65.68 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
+...+++.||+|+||||+++++...+..
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 3457999999999999999999887754
No 357
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.042 Score=61.04 Aligned_cols=26 Identities=38% Similarity=0.675 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
++.+++|+||+|+||||++..+|..+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999999754
No 358
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.024 Score=64.58 Aligned_cols=83 Identities=23% Similarity=0.356 Sum_probs=46.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhC-----CCeEEEecCCccc--hhhhccCcc--c---cccCCcchHHHHHhhcC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALG-----RKFIRISLGGVKD--EADIRGHRR--T---YIGSMPGRLIDGLKRVG 305 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~-----~~~~~i~~~~~~~--~s~l~g~~~--~---yvG~~~g~l~~~~~~a~ 305 (728)
..+.+++|+||+|+||||++..||..+. .....++...+.. ...+..... + +.-.....+...+....
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 4578999999999999999999987652 2333444433221 111111000 0 11112234555555443
Q ss_pred CCCcEEEEecccccCC
Q 004834 306 VCNPVMLLDEIDKTGS 321 (728)
Q Consensus 306 ~~~~VlllDEidkl~~ 321 (728)
...+||||.......
T Consensus 428 -~~DLVLIDTaG~s~~ 442 (559)
T PRK12727 428 -DYKLVLIDTAGMGQR 442 (559)
T ss_pred -cCCEEEecCCCcchh
Confidence 246999998876543
No 359
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.85 E-value=0.0028 Score=68.24 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=26.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
..+.+++++||+|+||||++++++..+.....
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~ 173 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDER 173 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCcccc
Confidence 35678999999999999999999988854433
No 360
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.84 E-value=0.0025 Score=59.70 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=26.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRK 267 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~ 267 (728)
.++..++|.|+.|+||||+++.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 467789999999999999999999999743
No 361
>PF14516 AAA_35: AAA-like domain
Probab=96.84 E-value=0.018 Score=62.70 Aligned_cols=167 Identities=22% Similarity=0.285 Sum_probs=86.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccc-----hhh-----------hccCcc---ccccC---
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKD-----EAD-----------IRGHRR---TYIGS--- 292 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~-----~s~-----------l~g~~~---~yvG~--- 292 (728)
.+|..+.+.||..+|||++...+.+.+ +...+.+++....+ ... -.+... .|...
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 457789999999999999999888776 45566777665311 110 011110 11110
Q ss_pred CcchHHHHHhh---cCCCCc-EEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEec-CCCC
Q 004834 293 MPGRLIDGLKR---VGVCNP-VMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA-NRAQ 367 (728)
Q Consensus 293 ~~g~l~~~~~~---a~~~~~-VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~Tt-N~~~ 367 (728)
........+.. .....| |++|||||.+.... .....|+.+|-..+..+-.. + ...+..+|.+. ....
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~--~~~~dF~~~LR~~~~~~~~~-----~-~~~~L~li~~~~t~~~ 180 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP--QIADDFFGLLRSWYEQRKNN-----P-IWQKLRLILAGSTEDY 180 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc--chHHHHHHHHHHHHHhcccC-----c-ccceEEEEEecCcccc
Confidence 11122222222 112234 88999999997632 11345555553222211100 0 11223333322 2211
Q ss_pred CC----ChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHc
Q 004834 368 PI----PPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRY 427 (728)
Q Consensus 368 ~l----~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~ 427 (728)
.. ..++ +-..-|.++++|.++...+++.+ ...+++..++.+...+
T Consensus 181 ~~~~~~~SPF-NIg~~i~L~~Ft~~ev~~L~~~~--------------~~~~~~~~~~~l~~~t 229 (331)
T PF14516_consen 181 IILDINQSPF-NIGQPIELPDFTPEEVQELAQRY--------------GLEFSQEQLEQLMDWT 229 (331)
T ss_pred cccCCCCCCc-ccccceeCCCCCHHHHHHHHHhh--------------hccCCHHHHHHHHHHH
Confidence 11 1122 22235899999999988887765 1456676677776543
No 362
>PRK06762 hypothetical protein; Provisional
Probab=96.83 E-value=0.0013 Score=63.97 Aligned_cols=32 Identities=31% Similarity=0.560 Sum_probs=26.7
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
..++|+|+||+||||+|+.+++.++.....++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 46889999999999999999999865555554
No 363
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.83 E-value=0.0016 Score=68.58 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=29.4
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+++++||||+||||+.++++..+......+.+.|
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g 146 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRG 146 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECC
Confidence 68999999999999999999999976655555544
No 364
>PRK14532 adenylate kinase; Provisional
Probab=96.83 E-value=0.00098 Score=66.21 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=24.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
.++|+||||+||||+|+.||+.++..++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i 29 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL 29 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 4789999999999999999999876554
No 365
>PRK06217 hypothetical protein; Validated
Probab=96.80 E-value=0.0012 Score=65.55 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=26.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRI 271 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i 271 (728)
.+++.|+||+||||+++.|++.++.+++..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~ 32 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDT 32 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEc
Confidence 488999999999999999999998876544
No 366
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.79 E-value=0.00098 Score=65.78 Aligned_cols=31 Identities=29% Similarity=0.552 Sum_probs=25.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 243 LCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 243 lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
++++||||+||||+|+.||+.++. ..++++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d 32 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGD 32 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECCh
Confidence 789999999999999999999864 4455543
No 367
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.79 E-value=0.001 Score=62.74 Aligned_cols=30 Identities=30% Similarity=0.629 Sum_probs=26.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 243 LCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 243 lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
+++.|+|||||||+|+.||+.++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999988876554
No 368
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.79 E-value=0.0014 Score=71.88 Aligned_cols=31 Identities=39% Similarity=0.513 Sum_probs=27.1
Q ss_pred CCCCCEEEEEcCCCCChhHHHHHHHHHhCCC
Q 004834 237 DARGPVLCFVGPPGVGKTSLASSIASALGRK 267 (728)
Q Consensus 237 ~~~~~~lLL~GPpGtGKT~LakalA~~l~~~ 267 (728)
-.+|..++++||||+|||++++.+++.+...
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 3678889999999999999999999987543
No 369
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.78 E-value=0.0012 Score=62.82 Aligned_cols=29 Identities=41% Similarity=0.716 Sum_probs=25.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
.+.+.|||||||||+|+.||+.+|.+++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceee
Confidence 36789999999999999999999988863
No 370
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.78 E-value=0.0011 Score=63.32 Aligned_cols=27 Identities=33% Similarity=0.701 Sum_probs=23.7
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 243 LCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 243 lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
++|+||||+||||+|+.+++.++..++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 689999999999999999999866543
No 371
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.74 E-value=0.002 Score=67.99 Aligned_cols=91 Identities=22% Similarity=0.281 Sum_probs=47.5
Q ss_pred HHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCC-eEEEecCCccchhhhccCcccccc--CCcchHHH
Q 004834 223 QRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK-FIRISLGGVKDEADIRGHRRTYIG--SMPGRLID 299 (728)
Q Consensus 223 ~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~-~~~i~~~~~~~~s~l~g~~~~yvG--~~~g~l~~ 299 (728)
+.+.+++.... ..+.++++.||+|+||||+++++...+... ...+.+.+ ..+..+.+.....+. .......+
T Consensus 114 ~~~~~~l~~~v----~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd-~~E~~l~~~~~~~~~~~~~~~~~~~ 188 (270)
T PF00437_consen 114 EEIAEFLRSAV----RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIED-PPELRLPGPNQIQIQTRRDEISYED 188 (270)
T ss_dssp HHHHHHHHHCH----HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEES-SS-S--SCSSEEEEEEETTTBSHHH
T ss_pred HHHHHHHhhcc----ccceEEEEECCCccccchHHHHHhhhccccccceEEecc-ccceeecccceEEEEeecCcccHHH
Confidence 44555544321 235689999999999999999999998655 33333322 111122111101010 11223344
Q ss_pred HHhhcCCCCc-EEEEecccc
Q 004834 300 GLKRVGVCNP-VMLLDEIDK 318 (728)
Q Consensus 300 ~~~~a~~~~~-VlllDEidk 318 (728)
+++.+-..+| +++++||..
T Consensus 189 ~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 189 LLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp HHHHHTTS--SEEEESCE-S
T ss_pred HHHHHhcCCCCcccccccCC
Confidence 4444333334 999999865
No 372
>PRK14531 adenylate kinase; Provisional
Probab=96.73 E-value=0.0015 Score=64.74 Aligned_cols=29 Identities=38% Similarity=0.738 Sum_probs=25.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
.++++||||+||||+++.||+.++.+++.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 58899999999999999999999766543
No 373
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.73 E-value=0.01 Score=62.51 Aligned_cols=165 Identities=18% Similarity=0.231 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchH
Q 004834 218 LVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRL 297 (728)
Q Consensus 218 ~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l 297 (728)
.+++.+.|.....+-. .++.+.+|+|.+|+||+++++..|...+..++.+.++..-+..+ ....+
T Consensus 13 f~~ai~hi~ri~RvL~----~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~-----------f~~dL 77 (268)
T PF12780_consen 13 FDEAIEHIARISRVLS----QPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKD-----------FKEDL 77 (268)
T ss_dssp -HHHHHHHHHHHHHHC----STTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHH-----------HHHHH
T ss_pred HHHHHHHHHHHHHHHc----CCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHH-----------HHHHH
Confidence 4555665555444332 45678999999999999999988888877777666543111111 11345
Q ss_pred HHHHhhcCCCC-c-EEEEecccccCCCC-----------------CCCHHHHHHHhcCcc-ccccccc-------CCCCe
Q 004834 298 IDGLKRVGVCN-P-VMLLDEIDKTGSDV-----------------RGDPASALLEVLDPE-QNKTFND-------HYLNV 350 (728)
Q Consensus 298 ~~~~~~a~~~~-~-VlllDEidkl~~~~-----------------~~~~~~~Ll~~Ld~~-~~~~~~d-------~~~~~ 350 (728)
..++.+++..+ + ++++++-+-..... ..+....+.+-+.+. +..++.+ .+..+
T Consensus 78 k~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~r 157 (268)
T PF12780_consen 78 KKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIER 157 (268)
T ss_dssp HHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHH
Confidence 56666666543 3 66676643322211 122233333222110 0011110 01000
Q ss_pred eecCCCcEEEEec-CCCCCC------ChhhhCCeeEEEcCCCCHHHHHHHHHHhhc
Q 004834 351 PFDLSKVIFVATA-NRAQPI------PPPLLDRMEVIELPGYTPEEKLRIAMRHLI 399 (728)
Q Consensus 351 ~~d~~~vi~I~Tt-N~~~~l------~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~ 399 (728)
+ ..|.-||.+. ...+.+ -|+|.++|.+.-|.+-+.+.+..+...++.
T Consensus 158 -v-r~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~ 211 (268)
T PF12780_consen 158 -V-RKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLS 211 (268)
T ss_dssp -H-CCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCC
T ss_pred -H-HhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHH
Confidence 0 1233333333 333333 377888889999999999999999998864
No 374
>PF13245 AAA_19: Part of AAA domain
Probab=96.73 E-value=0.0023 Score=53.87 Aligned_cols=25 Identities=52% Similarity=0.923 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCChh-HHHHHHHHHh
Q 004834 240 GPVLCFVGPPGVGKT-SLASSIASAL 264 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT-~LakalA~~l 264 (728)
.+.+++.|||||||| +++..++..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456777999999999 5556666665
No 375
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.73 E-value=0.0013 Score=66.77 Aligned_cols=39 Identities=36% Similarity=0.423 Sum_probs=35.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 276 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~ 276 (728)
.+|..+-++||+|||||||+++++.........|.+.|.
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~ 69 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGK 69 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCc
Confidence 578899999999999999999999999888888888773
No 376
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.72 E-value=0.0016 Score=63.98 Aligned_cols=33 Identities=27% Similarity=0.522 Sum_probs=28.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
...++|+||||+||||+++.+|+.++.+++..+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 346899999999999999999999988876554
No 377
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.72 E-value=0.0091 Score=66.60 Aligned_cols=120 Identities=21% Similarity=0.269 Sum_probs=73.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhc-CCCCcEEEEecccccC
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRV-GVCNPVMLLDEIDKTG 320 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a-~~~~~VlllDEidkl~ 320 (728)
.++++||-+|||||+++.+.+.+....+.++..+.... ..........+... ......+|||||.++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~-----------~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~ 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLD-----------RIELLDLLRAYIELKEREKSYIFLDEIQNVP 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcc-----------hhhHHHHHHHHHHhhccCCceEEEecccCch
Confidence 89999999999999999888887555444444332110 00011112222111 1134599999999975
Q ss_pred CCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC---CCCChhhhCCeeEEEcCCCCHHHHHHH
Q 004834 321 SDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA---QPIPPPLLDRMEVIELPGYTPEEKLRI 393 (728)
Q Consensus 321 ~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~---~~l~~~Ll~R~~vI~~~~~t~ee~~~I 393 (728)
. - ...+-.+.|.... -++|.++|.. ....+.|-.|...+.+.|+|..|-...
T Consensus 108 ~-W----~~~lk~l~d~~~~----------------~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 108 D-W----ERALKYLYDRGNL----------------DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred h-H----HHHHHHHHccccc----------------eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 3 1 3444445542210 1455655554 356677788988899999999888653
No 378
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.71 E-value=0.0012 Score=69.02 Aligned_cols=174 Identities=20% Similarity=0.272 Sum_probs=92.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc--cchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEec
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV--KDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 315 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~--~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDE 315 (728)
..|..+-|+||+|+|||||.|.||......-.+|.+++. .|.+.+. .+...+|...+... .|+.......|-|==.
T Consensus 26 ~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~-~~~R~VGfvFQ~YA-LF~HmtVa~NIAFGl~ 103 (345)
T COG1118 26 KSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA-VRDRKVGFVFQHYA-LFPHMTVADNIAFGLK 103 (345)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc-hhhcceeEEEechh-hcccchHHhhhhhccc
Confidence 467789999999999999999999999888888888874 2444422 23345777665533 4554443333433222
Q ss_pred ccccCCCC--CCCHHHHHHHhcCcccccccccCCCCeeecCCCc--EEEEecCCCCCCChhhhCCeeEEE----cCCCCH
Q 004834 316 IDKTGSDV--RGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV--IFVATANRAQPIPPPLLDRMEVIE----LPGYTP 387 (728)
Q Consensus 316 idkl~~~~--~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v--i~I~TtN~~~~l~~~Ll~R~~vI~----~~~~t~ 387 (728)
+.+..++. .......||+++. ...+.+.| |.++|+- --|+-+.... ..| .++- |..++.
T Consensus 104 ~~~~~p~~~~~r~rv~elL~lvq---L~~la~ry---P~QLSGGQrQRVALARALA-~eP------~vLLLDEPf~ALDa 170 (345)
T COG1118 104 VRKERPSEAEIRARVEELLRLVQ---LEGLADRY---PAQLSGGQRQRVALARALA-VEP------KVLLLDEPFGALDA 170 (345)
T ss_pred ccccCCChhhHHHHHHHHHHHhc---ccchhhcC---chhcChHHHHHHHHHHHhh-cCC------CeEeecCCchhhhH
Confidence 22222211 0011455666654 33344433 3333321 0001011000 111 1222 233344
Q ss_pred HHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcc
Q 004834 388 EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT 428 (728)
Q Consensus 388 ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~ 428 (728)
.-+.+ +++. +.+...+.+++...++.+.+....++++..
T Consensus 171 ~vr~~-lr~w-Lr~~~~~~~~ttvfVTHD~eea~~ladrvv 209 (345)
T COG1118 171 KVRKE-LRRW-LRKLHDRLGVTTVFVTHDQEEALELADRVV 209 (345)
T ss_pred HHHHH-HHHH-HHHHHHhhCceEEEEeCCHHHHHhhcceEE
Confidence 33333 2333 245566778888888888888877777543
No 379
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.71 E-value=0.0039 Score=62.05 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
++..+.|+||||+|||+|++.+.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45678999999999999999998865
No 380
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.71 E-value=0.0011 Score=64.20 Aligned_cols=26 Identities=42% Similarity=0.797 Sum_probs=22.9
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCe
Q 004834 243 LCFVGPPGVGKTSLASSIASALGRKF 268 (728)
Q Consensus 243 lLL~GPpGtGKT~LakalA~~l~~~~ 268 (728)
++++||||+||||+|+.+++.++..+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~ 26 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKF 26 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 46899999999999999999997544
No 381
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0065 Score=59.51 Aligned_cols=38 Identities=32% Similarity=0.433 Sum_probs=33.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.+.||+|+|||||.|.||..+.+...+|.+.+
T Consensus 26 ~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~ 63 (209)
T COG4133 26 NAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQG 63 (209)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecC
Confidence 46778999999999999999999999988777777664
No 382
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.69 E-value=0.0099 Score=59.47 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=56.4
Q ss_pred EEEEEcCCCCChhHHHHHH-HHH-h--CCCeEEEecCCccc--hhhhccCccc--c------ccCCcchHHHHHhhcCCC
Q 004834 242 VLCFVGPPGVGKTSLASSI-ASA-L--GRKFIRISLGGVKD--EADIRGHRRT--Y------IGSMPGRLIDGLKRVGVC 307 (728)
Q Consensus 242 ~lLL~GPpGtGKT~Lakal-A~~-l--~~~~~~i~~~~~~~--~s~l~g~~~~--y------vG~~~g~l~~~~~~a~~~ 307 (728)
+.+++|.||+|||+.|-.. ... + |++.+. ++.|+.- .....+.... + .+.....-.......+ .
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 79 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLP-K 79 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSG-T
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccC-C
Confidence 4689999999999988555 332 3 455444 5554321 1111010000 0 0000011112222222 4
Q ss_pred CcEEEEecccccCCCCCCC--HHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCee-EEEcC
Q 004834 308 NPVMLLDEIDKTGSDVRGD--PASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRME-VIELP 383 (728)
Q Consensus 308 ~~VlllDEidkl~~~~~~~--~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~-vI~~~ 383 (728)
+++++|||+....+..... ......+.|...+ | .+.-+|++|-.+..+++.+++..+ .+.+.
T Consensus 80 ~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hR------h--------~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 80 GSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHR------H--------YGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp T-EEEETTGGGTSB---T-T----HHHHGGGGCC------C--------TT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred CcEEEEECChhhcCCCccccccchHHHHHHHHhC------c--------CCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 6799999999998876432 2233446664221 1 123566778888899999998776 45444
No 383
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.68 E-value=0.0015 Score=65.26 Aligned_cols=38 Identities=26% Similarity=0.510 Sum_probs=32.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|.+++++||||+||||+.|+|...-......|.+.|
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g 63 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDG 63 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECC
Confidence 57889999999999999999999987767777777766
No 384
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.64 E-value=0.0019 Score=63.00 Aligned_cols=31 Identities=39% Similarity=0.690 Sum_probs=27.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
.++|+|+||+||||+++.+|+.++.+++..+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5788999999999999999999999887554
No 385
>PRK14527 adenylate kinase; Provisional
Probab=96.63 E-value=0.0017 Score=64.85 Aligned_cols=32 Identities=41% Similarity=0.750 Sum_probs=27.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
..+..++++||||+||||+|+.+|+.++...+
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 45678999999999999999999998875443
No 386
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.62 E-value=0.0039 Score=63.54 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=34.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 276 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~ 276 (728)
.+|..+-|+|++|+|||||.+.||..+.+.-..+.+.|.
T Consensus 51 ~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~ 89 (249)
T COG1134 51 YKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK 89 (249)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce
Confidence 567899999999999999999999999888877776663
No 387
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.62 E-value=0.051 Score=60.73 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=44.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh----C-CCeEEEecCCcc--------chhhhccCccccccCCcchHHHHHhhc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL----G-RKFIRISLGGVK--------DEADIRGHRRTYIGSMPGRLIDGLKRV 304 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l----~-~~~~~i~~~~~~--------~~s~l~g~~~~yvG~~~g~l~~~~~~a 304 (728)
..+..++|+||+|+||||++..||..+ + .....+....+. ...++.|.+. +..+.+..+...+...
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~-~~v~~~~dl~~al~~l 267 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV-RSIKDIADLQLMLHEL 267 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce-ecCCCHHHHHHHHHHh
Confidence 456789999999999999999998753 2 223333333321 1223333321 2223333444444433
Q ss_pred CCCCcEEEEecccc
Q 004834 305 GVCNPVMLLDEIDK 318 (728)
Q Consensus 305 ~~~~~VlllDEidk 318 (728)
. ...++++|....
T Consensus 268 ~-~~d~VLIDTaGr 280 (420)
T PRK14721 268 R-GKHMVLIDTVGM 280 (420)
T ss_pred c-CCCEEEecCCCC
Confidence 2 235899998533
No 388
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.61 E-value=0.0019 Score=70.65 Aligned_cols=31 Identities=35% Similarity=0.535 Sum_probs=27.0
Q ss_pred CCCCCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 236 PDARGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 236 ~~~~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
|-.+|...+++||||||||+|++.|++....
T Consensus 165 PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 165 PIGKGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred ccccCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 4567788999999999999999999988743
No 389
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.60 E-value=0.002 Score=63.64 Aligned_cols=27 Identities=41% Similarity=0.773 Sum_probs=23.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCe
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKF 268 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~ 268 (728)
.+++.||||+||||+|+.||+.++.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~h 28 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPH 28 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 478999999999999999999965443
No 390
>PRK13946 shikimate kinase; Provisional
Probab=96.59 E-value=0.0019 Score=64.15 Aligned_cols=33 Identities=27% Similarity=0.521 Sum_probs=29.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
...++|+|+|||||||+++.+|+.++.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 347999999999999999999999999987655
No 391
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.59 E-value=0.0029 Score=52.17 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=20.7
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 004834 243 LCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 243 lLL~GPpGtGKT~LakalA~~l 264 (728)
+++.|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987
No 392
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.59 E-value=0.003 Score=68.36 Aligned_cols=122 Identities=23% Similarity=0.239 Sum_probs=66.2
Q ss_pred CCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEec
Q 004834 236 PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 315 (728)
Q Consensus 236 ~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDE 315 (728)
..++..-++|+|||.||||+++.++-+.++...+ ++.. +...--.+-+.. ..|.+||+
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkVi--Sf~N----------------s~ShFWLqPL~d----~Ki~llDD 315 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVI--SFVN----------------SKSHFWLQPLAD----AKIALLDD 315 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE---GGG----------------TTSCGGGGGGCT-----SSEEEEE
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEE--EecC----------------CCCcccccchhc----CcEEEEcC
Confidence 3466678999999999999999999999965443 3222 111111122222 23889998
Q ss_pred ccccCCCCCCCHH-HHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCC---hhhhCCeeEEEcCCC
Q 004834 316 IDKTGSDVRGDPA-SALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIP---PPLLDRMEVIELPGY 385 (728)
Q Consensus 316 idkl~~~~~~~~~-~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~---~~Ll~R~~vI~~~~~ 385 (728)
+-...=+. . .-|...||+.. ...|..-.-|+..+---++.|||..-.-+ .-|.+|+.++.|+.+
T Consensus 316 AT~~cW~Y----~D~ylRNaLDGN~--vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhSRi~~f~F~n~ 383 (432)
T PF00519_consen 316 ATYPCWDY----IDTYLRNALDGNP--VSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHSRITCFEFPNP 383 (432)
T ss_dssp E-HHHHHH----HHHHTHHHHCTSE--EEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCTTEEEEE--S-
T ss_pred CcccHHHH----HHHHHHhccCCCe--eeeeccCCCceEeecCceEEecCCCCCcchhhhhhhheEEEEEcCCc
Confidence 76543222 2 22456777532 22332223333333234556888754333 445689999999864
No 393
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.57 E-value=0.033 Score=60.18 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
.++.+++|+||||+||||++..+|..+..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 35678999999999999999999998843
No 394
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.57 E-value=0.00026 Score=72.80 Aligned_cols=39 Identities=21% Similarity=0.423 Sum_probs=35.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 276 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~ 276 (728)
++|..+.|+||+|.||||+.|.+...+-+....+...|.
T Consensus 48 P~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~ 86 (325)
T COG4586 48 PKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGK 86 (325)
T ss_pred CCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCc
Confidence 678899999999999999999999999888888888774
No 395
>PTZ00202 tuzin; Provisional
Probab=96.57 E-value=0.016 Score=64.03 Aligned_cols=162 Identities=16% Similarity=0.210 Sum_probs=87.8
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccc----hhhhccCcccc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKD----EADIRGHRRTY 289 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~----~s~l~g~~~~y 289 (728)
+++|.+....++...+..... ..+..+.|+||+|||||++++.+...++.+.+.++..+..+ ...-.|-++..
T Consensus 263 ~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~LL~ALGV~p~~ 339 (550)
T PTZ00202 263 QFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRSVVKALGVPNVE 339 (550)
T ss_pred CCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHHHHHHcCCCCcc
Confidence 567888878888776653222 22348899999999999999999999987666666654321 11112322211
Q ss_pred c-cCCcchHHHHHhhcC---CCCcEEEE--ecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEec
Q 004834 290 I-GSMPGRLIDGLKRVG---VCNPVMLL--DEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA 363 (728)
Q Consensus 290 v-G~~~g~l~~~~~~a~---~~~~Vlll--DEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~Tt 363 (728)
. +.....+.+.+.... ...||++| -|-+.+..- .|....+- .|.+-|-++.--
T Consensus 340 ~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rv-----yne~v~la----------------~drr~ch~v~ev 398 (550)
T PTZ00202 340 ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRV-----YNEVVALA----------------CDRRLCHVVIEV 398 (550)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHH-----HHHHHHHH----------------ccchhheeeeee
Confidence 1 222233444443332 23455554 232222110 11111111 111222222211
Q ss_pred CCCC--CCChhhhCCeeEEEcCCCCHHHHHHHHHHhhch
Q 004834 364 NRAQ--PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIP 400 (728)
Q Consensus 364 N~~~--~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~ 400 (728)
+.+ ++....+-|+|+..+|+++.++-.+...+.+.+
T Consensus 399 -pleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~da 436 (550)
T PTZ00202 399 -PLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAIDA 436 (550)
T ss_pred -hHhhcchhcccCccceeEecCCCCHHHHHHHHhhccch
Confidence 111 234455679999999999999988877776543
No 396
>PRK06547 hypothetical protein; Provisional
Probab=96.56 E-value=0.0022 Score=62.96 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=27.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
.+...+++.||||+||||+++.+++.++.+++.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~ 45 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVH 45 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeec
Confidence 344578888999999999999999998766543
No 397
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.56 E-value=0.0018 Score=64.37 Aligned_cols=29 Identities=28% Similarity=0.595 Sum_probs=24.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKF 268 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~ 268 (728)
+..++|+||||+||||+++.|+..++.++
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~ 30 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQL 30 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeE
Confidence 35788999999999999999998876543
No 398
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.54 E-value=0.0019 Score=64.15 Aligned_cols=27 Identities=37% Similarity=0.693 Sum_probs=24.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 243 LCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 243 lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
++++||||+||||+|+.||+.++..++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i 28 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI 28 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 789999999999999999999876554
No 399
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.52 E-value=0.077 Score=59.72 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccch--------hhhccCccccccCCc----chHHHHHhh
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDE--------ADIRGHRRTYIGSMP----GRLIDGLKR 303 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~~--------s~l~g~~~~yvG~~~----g~l~~~~~~ 303 (728)
++.+++|+||||+||||++..+|..+ +....-+++..+... .+..|.+ -|..... ..+.+++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp-~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVP-FYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCc-EEecCCccCHHHHHHHHHHH
Confidence 45689999999999999999999888 344455555544321 1111211 1221111 123345554
Q ss_pred cCCCCcEEEEecccccCC
Q 004834 304 VGVCNPVMLLDEIDKTGS 321 (728)
Q Consensus 304 a~~~~~VlllDEidkl~~ 321 (728)
+.. ..++++|.....+.
T Consensus 173 ~~~-~DvVIIDTAGr~~~ 189 (437)
T PRK00771 173 FKK-ADVIIVDTAGRHAL 189 (437)
T ss_pred hhc-CCEEEEECCCcccc
Confidence 443 37999999877654
No 400
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.0054 Score=71.02 Aligned_cols=39 Identities=38% Similarity=0.563 Sum_probs=34.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 276 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~ 276 (728)
++|.++.|+||+|.||||+|..+-+...+...+|.++|.
T Consensus 492 ~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~ 530 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGV 530 (716)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCe
Confidence 467899999999999999999999999887777776663
No 401
>PRK14700 recombination factor protein RarA; Provisional
Probab=96.51 E-value=0.0099 Score=62.68 Aligned_cols=82 Identities=15% Similarity=0.223 Sum_probs=61.1
Q ss_pred CCcEEEE--ecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccc
Q 004834 355 SKVIFVA--TANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAG 432 (728)
Q Consensus 355 ~~vi~I~--TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G 432 (728)
+.+++|+ |-|+...+.++|++||.++.|.+++.++...++++.+... .++....+.++++++.+|+....+.
T Consensus 7 G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~----~~~~~~~~~i~~~al~~ia~~a~GD-- 80 (300)
T PRK14700 7 GKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQD----EVLAKHKFKIDDGLYNAMHNYNEGD-- 80 (300)
T ss_pred CcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhh----hccCCcCCCcCHHHHHHHHHhcCCH--
Confidence 4467777 4478889999999999999999999999999999987431 1222335789999999999876643
Q ss_pred hHHHHHHHHH
Q 004834 433 VRNLERNLAA 442 (728)
Q Consensus 433 ~R~L~~~I~~ 442 (728)
+|..-+.++.
T Consensus 81 aR~aLN~LE~ 90 (300)
T PRK14700 81 CRKILNLLER 90 (300)
T ss_pred HHHHHHHHHH
Confidence 3443333333
No 402
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=96.51 E-value=0.054 Score=60.24 Aligned_cols=133 Identities=20% Similarity=0.180 Sum_probs=79.8
Q ss_pred HHHHHhhcCCCCcEEEEecccccCC---CC-CCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC-----
Q 004834 297 LIDGLKRVGVCNPVMLLDEIDKTGS---DV-RGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ----- 367 (728)
Q Consensus 297 l~~~~~~a~~~~~VlllDEidkl~~---~~-~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~----- 367 (728)
+...++.+++..-+|+|||++.+.. +. +....+.|++++|..-... +.++.|+.|..+..
T Consensus 229 L~~~lr~aGy~GLlI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~~G~-----------~~gL~~~~~gTPef~eD~r 297 (416)
T PF10923_consen 229 LARFLRDAGYKGLLILLDELENLYKLRNDQAREKNYEALRQLIDDIDQGR-----------APGLYFVFAGTPEFFEDGR 297 (416)
T ss_pred HHHHHHHcCCCceEEEEechHHHHhcCChHHHHHHHHHHHHHHHHHhcCC-----------CCceEEEEeeCHHHhhCcc
Confidence 3455667777666999999997743 22 3344788999988533221 23444444433211
Q ss_pred -----------------CCChhhhCCe-eEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHccc
Q 004834 368 -----------------PIPPPLLDRM-EVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 429 (728)
Q Consensus 368 -----------------~l~~~Ll~R~-~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~ 429 (728)
.-++.+.+-. .+|.+++++.++...++.+.. .-....++ ....++++.+..+++.+.+
T Consensus 298 rGv~sY~AL~~RL~~~~~~~~~~~n~~~pvIrL~~l~~eel~~l~~klr-~i~a~~~~---~~~~v~d~~l~~~~~~~~~ 373 (416)
T PF10923_consen 298 RGVYSYEALAQRLAEEFFADDGFDNLRAPVIRLQPLTPEELLELLEKLR-DIYAEAYG---YESRVDDEELKAFAQHVAG 373 (416)
T ss_pred ccccccHHHHHHHhccccccccccCccCceecCCCCCHHHHHHHHHHHH-HHHHhhCC---CCCCCCHHHHHHHHHHHHh
Confidence 1123333322 379999999999987776642 11222222 2368999999999998887
Q ss_pred ccchHHH---HHHHHHHH
Q 004834 430 EAGVRNL---ERNLAALA 444 (728)
Q Consensus 430 ~~G~R~L---~~~I~~l~ 444 (728)
..|.... +..|...+
T Consensus 374 r~G~~~~~tPR~~ik~fv 391 (416)
T PF10923_consen 374 RLGGDVFVTPREFIKDFV 391 (416)
T ss_pred ccCcccccCHHHHHHHHH
Confidence 7665321 44454444
No 403
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.50 E-value=0.0037 Score=68.79 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
...++++||+|+||||+++++...+.
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999998874
No 404
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.50 E-value=0.0019 Score=62.41 Aligned_cols=29 Identities=38% Similarity=0.759 Sum_probs=24.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRI 271 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i 271 (728)
.++++|.|||||||+++.|+ .++.+.+.+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l 30 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIEL 30 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeH
Confidence 58999999999999999999 777666533
No 405
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.49 E-value=0.0041 Score=67.00 Aligned_cols=35 Identities=31% Similarity=0.622 Sum_probs=30.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
.++..++|+|+||||||++++.+|+.++.+++.++
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 45668999999999999999999999999998443
No 406
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.49 E-value=0.002 Score=59.16 Aligned_cols=22 Identities=41% Similarity=0.699 Sum_probs=20.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 004834 243 LCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 243 lLL~GPpGtGKT~LakalA~~l 264 (728)
++|.|+|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999987
No 407
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.48 E-value=0.0025 Score=64.87 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++++||+|+|||||+++|+..+......+.+.+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g 65 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDG 65 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECC
Confidence 57789999999999999999999998876667776655
No 408
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.46 E-value=0.0029 Score=65.09 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=25.3
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
..++|+||||+||||+|+.+|+.++.+++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~i 35 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHI 35 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 35899999999999999999999976554
No 409
>PLN02200 adenylate kinase family protein
Probab=96.45 E-value=0.0028 Score=65.45 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=27.1
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
..++++||||+||||+|+.||+.++.. .++++.
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gd 76 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGD 76 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccH
Confidence 478899999999999999999998754 455544
No 410
>PRK02496 adk adenylate kinase; Provisional
Probab=96.45 E-value=0.0027 Score=62.90 Aligned_cols=28 Identities=43% Similarity=0.659 Sum_probs=24.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
.+++.||||+||||+++.||+.++.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i 30 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHI 30 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4789999999999999999999876554
No 411
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.43 E-value=0.011 Score=64.16 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=25.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRK 267 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~ 267 (728)
.+.+++++||+|+||||+++++...+...
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~ 187 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAI 187 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 45679999999999999999999988654
No 412
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.42 E-value=0.0033 Score=63.59 Aligned_cols=38 Identities=32% Similarity=0.532 Sum_probs=29.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCC-CeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGR-KFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~-~~~~i~~~~ 275 (728)
+++..+.+.||||+||||++++|+..+.. ....+....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~ 42 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDN 42 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccc
Confidence 45668999999999999999999998864 344444443
No 413
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.42 E-value=0.033 Score=57.44 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=71.9
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCeEEEec-CCccchhhhc-cCccccccCCc-----ch--------HHHHHhhcC
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKFIRISL-GGVKDEADIR-GHRRTYIGSMP-----GR--------LIDGLKRVG 305 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~-~~~~~~s~l~-g~~~~yvG~~~-----g~--------l~~~~~~a~ 305 (728)
-.++++||+|+|||++++.+-..+...+-.+-+ +.... ...- .-.+.++.... .. +.+...+..
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n-~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYN-NEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCc-hhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 378999999999999999998877654432222 22111 1110 00111111110 00 111222111
Q ss_pred CC----CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCee-EE
Q 004834 306 VC----NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRME-VI 380 (728)
Q Consensus 306 ~~----~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~-vI 380 (728)
.. ..++++|++..- ..+ ...+.+++.. |+. +++.+|..+-....+|+.++.-++ ++
T Consensus 93 ~~k~~~~~LiIlDD~~~~--~~k---~~~l~~~~~~-----------gRH---~~is~i~l~Q~~~~lp~~iR~n~~y~i 153 (241)
T PF04665_consen 93 QKKNNPRFLIILDDLGDK--KLK---SKILRQFFNN-----------GRH---YNISIIFLSQSYFHLPPNIRSNIDYFI 153 (241)
T ss_pred ccCCCCCeEEEEeCCCCc--hhh---hHHHHHHHhc-----------ccc---cceEEEEEeeecccCCHHHhhcceEEE
Confidence 11 238889986431 111 3445555542 222 245566777777889999987777 44
Q ss_pred EcCCCCHHHHHHHHHHh
Q 004834 381 ELPGYTPEEKLRIAMRH 397 (728)
Q Consensus 381 ~~~~~t~ee~~~Il~~~ 397 (728)
-++ .+......|++.+
T Consensus 154 ~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 154 IFN-NSKRDLENIYRNM 169 (241)
T ss_pred Eec-CcHHHHHHHHHhc
Confidence 454 5666666666554
No 414
>PRK14528 adenylate kinase; Provisional
Probab=96.42 E-value=0.003 Score=62.80 Aligned_cols=28 Identities=36% Similarity=0.615 Sum_probs=24.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
.+++.||||+||||+++.+|+.++.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~i 30 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQI 30 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 5889999999999999999999976654
No 415
>PRK04040 adenylate kinase; Provisional
Probab=96.42 E-value=0.0034 Score=62.58 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=26.8
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
..++++|+|||||||+++.+++.+...+..++++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~ 37 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGD 37 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecch
Confidence 46899999999999999999999942233344443
No 416
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.41 E-value=0.0036 Score=62.55 Aligned_cols=31 Identities=42% Similarity=0.673 Sum_probs=25.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
.++++||+|||||.+|-.+|+.++.+.+..+
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~D 33 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLD 33 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEec
Confidence 5789999999999999999999999888776
No 417
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.40 E-value=0.013 Score=63.16 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=46.2
Q ss_pred hhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc
Q 004834 211 LDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 276 (728)
Q Consensus 211 L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~ 276 (728)
+...+.+.+..+..+...+.- ....-+.++.++|-+|||||.+.+.+-+.++.+.+-+++-+-
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~---~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ec 66 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGN---NSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVEC 66 (438)
T ss_pred cccCccchHHHHHHHHHHhCC---CCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHh
Confidence 344566677777776665531 122234567999999999999999999999999988887654
No 418
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.39 E-value=0.0027 Score=62.43 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.2
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
..++++||||+||||++++|+..++.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 46889999999999999999998754
No 419
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.37 E-value=0.0066 Score=66.27 Aligned_cols=31 Identities=39% Similarity=0.547 Sum_probs=26.7
Q ss_pred CCCCCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 236 PDARGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 236 ~~~~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
+-.+|...+++||||||||+|++.+++.+..
T Consensus 129 PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 129 PIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred ecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4456778999999999999999999998843
No 420
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.37 E-value=0.0043 Score=60.40 Aligned_cols=38 Identities=29% Similarity=0.473 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
..+..+-+.||+|+|||||...||.+..+....+.+.+
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g 60 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILING 60 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcC
Confidence 56778999999999999999999999977766666554
No 421
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.37 E-value=0.0086 Score=64.19 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
+.+++++||+|+||||+++++...+.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 45799999999999999999999874
No 422
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.36 E-value=0.0035 Score=61.60 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=25.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
.++..++|.|+||+||||+++.+++.+..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46678999999999999999999999853
No 423
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.36 E-value=0.0033 Score=63.91 Aligned_cols=38 Identities=24% Similarity=0.414 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.++||+|+|||||++.|+..+......+.+.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 64 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNG 64 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 57789999999999999999999998866667776665
No 424
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.35 E-value=0.0057 Score=61.76 Aligned_cols=38 Identities=37% Similarity=0.676 Sum_probs=29.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~ 275 (728)
+++..++++||||+|||+++..++... +.+...++..+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 567799999999999999999988655 44566666644
No 425
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.34 E-value=0.0037 Score=61.66 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=25.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
.|..++++||||+||||++++++..++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4668999999999999999999999876
No 426
>PRK04182 cytidylate kinase; Provisional
Probab=96.31 E-value=0.0036 Score=61.27 Aligned_cols=29 Identities=41% Similarity=0.780 Sum_probs=26.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
.+++.|+||+||||+++.+|+.++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 58899999999999999999999887654
No 427
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.30 E-value=0.0072 Score=72.47 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=22.3
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
+.+++.|+|||||||+++++...+.
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~ 363 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAE 363 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999988774
No 428
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.29 E-value=0.0036 Score=64.53 Aligned_cols=38 Identities=32% Similarity=0.570 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||+++|+..+......+.+.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g 61 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDG 61 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 57889999999999999999999988866667776655
No 429
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.27 E-value=0.0086 Score=64.10 Aligned_cols=122 Identities=26% Similarity=0.290 Sum_probs=67.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCe-EEEecCC----ccc-hhhhccCccccccCCc-chHHHHHhhcCCCCcE
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKF-IRISLGG----VKD-EADIRGHRRTYIGSMP-GRLIDGLKRVGVCNPV 310 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~-~~i~~~~----~~~-~s~l~g~~~~yvG~~~-g~l~~~~~~a~~~~~V 310 (728)
..+.++.|+||-|+|||.|.-+.-..+..+- .++-+.. .|. ...+.|.. .+ ..+...+.. ...|
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~------dpl~~iA~~~~~---~~~v 133 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT------DPLPPIADELAA---ETRV 133 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC------CccHHHHHHHHh---cCCE
Confidence 4566899999999999999999888874322 3333221 111 22222222 11 112222221 2349
Q ss_pred EEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC-----------CCChh---hhCC
Q 004834 311 MLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-----------PIPPP---LLDR 376 (728)
Q Consensus 311 lllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~-----------~l~~~---Ll~R 376 (728)
++|||+.--.... .-..+.|++.|= -++|++++|||..- .|-|. +-+|
T Consensus 134 LCfDEF~VtDI~D-AMiL~rL~~~Lf-----------------~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~ 195 (367)
T COG1485 134 LCFDEFEVTDIAD-AMILGRLLEALF-----------------ARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSH 195 (367)
T ss_pred EEeeeeeecChHH-HHHHHHHHHHHH-----------------HCCcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHh
Confidence 9999987543211 000223333221 14688999999862 23332 3368
Q ss_pred eeEEEcCCCC
Q 004834 377 MEVIELPGYT 386 (728)
Q Consensus 377 ~~vI~~~~~t 386 (728)
|+++.++++.
T Consensus 196 ~~v~~vD~~~ 205 (367)
T COG1485 196 FEVVNVDGPV 205 (367)
T ss_pred eEEEEecCCc
Confidence 8888888774
No 430
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.27 E-value=0.0023 Score=66.67 Aligned_cols=23 Identities=35% Similarity=0.741 Sum_probs=21.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHhC
Q 004834 243 LCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 243 lLL~GPpGtGKT~LakalA~~l~ 265 (728)
++|+|+||+||||+|+.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999884
No 431
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.26 E-value=0.0039 Score=62.08 Aligned_cols=38 Identities=29% Similarity=0.496 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|.||+|+|||||+++|+.........+.+.+
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g 53 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDG 53 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECC
Confidence 56789999999999999999999988765556666554
No 432
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.0036 Score=64.40 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=32.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++|+||+|+|||||+++|+..+...-..+.+.+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 66 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDG 66 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 57889999999999999999999998866666666655
No 433
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.26 E-value=0.0064 Score=61.20 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
+..++|+||+|+||||+.++|+...
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH
Confidence 4789999999999999999998644
No 434
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.25 E-value=0.006 Score=61.71 Aligned_cols=38 Identities=29% Similarity=0.437 Sum_probs=29.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCC-CeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGR-KFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~-~~~~i~~~~ 275 (728)
.++..+.+.||||||||||++.|++.++. ....+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~ 42 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDS 42 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCc
Confidence 35568999999999999999999999843 344455444
No 435
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.25 E-value=0.0042 Score=62.96 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=31.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++++||+|+|||||++.|+..+......+.+.+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 62 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNG 62 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 57789999999999999999999998766666666655
No 436
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.004 Score=62.98 Aligned_cols=38 Identities=24% Similarity=0.431 Sum_probs=32.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.++||+|+|||||++.|+..+...-..+.+.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 61 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG 61 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 57789999999999999999999988766666666655
No 437
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.24 E-value=0.0041 Score=61.15 Aligned_cols=38 Identities=37% Similarity=0.545 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.++..+.+.||+|||||||...+|....+.-.++...+
T Consensus 29 a~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~ 66 (259)
T COG4525 29 ASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG 66 (259)
T ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECC
Confidence 46778999999999999999999999877777776655
No 438
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.24 E-value=0.0038 Score=63.28 Aligned_cols=28 Identities=43% Similarity=0.712 Sum_probs=24.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 243 LCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 243 lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
++++||||+||||+|+.||+.++.+.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 6899999999999999999988765543
No 439
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.24 E-value=0.0039 Score=63.10 Aligned_cols=38 Identities=29% Similarity=0.523 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|.||+|+|||||++.|+..+...-..+.+.+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 62 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDG 62 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 46789999999999999999999988766566666655
No 440
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.23 E-value=0.0042 Score=62.46 Aligned_cols=28 Identities=29% Similarity=0.584 Sum_probs=25.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
.++..++|+||||+|||||++.+++.+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4677899999999999999999999875
No 441
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.23 E-value=0.0026 Score=59.42 Aligned_cols=38 Identities=32% Similarity=0.535 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.++||+|+|||||.++|+.........+.+.+
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~ 46 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILING 46 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETT
T ss_pred cCCCEEEEEccCCCccccceeeeccccccccccccccc
Confidence 46789999999999999999999988766666666554
No 442
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.23 E-value=0.0068 Score=72.04 Aligned_cols=39 Identities=31% Similarity=0.426 Sum_probs=33.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 276 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~ 276 (728)
++|..+.++|++|||||||+|.+.+...+.-+++.++|.
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~ 535 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV 535 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 467789999999999999999999999887777777664
No 443
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.23 E-value=0.004 Score=63.08 Aligned_cols=38 Identities=29% Similarity=0.475 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++|.||+|+|||||.+.|+..+......+.+.+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 61 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDG 61 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 57889999999999999999999988766666666655
No 444
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.23 E-value=0.0041 Score=64.36 Aligned_cols=38 Identities=29% Similarity=0.482 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++|+||+|+|||||+++|+..+...-..+.+.+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 63 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEG 63 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECC
Confidence 56789999999999999999999988765556666555
No 445
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.22 E-value=0.0057 Score=62.68 Aligned_cols=38 Identities=24% Similarity=0.465 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh-----CCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL-----GRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l-----~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||+++|+..+ ...-..+.+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 66 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDG 66 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECC
Confidence 578899999999999999999999998 55556666655
No 446
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.22 E-value=0.0042 Score=62.53 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=32.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.++||+|+|||||++.++..+...-..+.+.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 59 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNG 59 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC
Confidence 46789999999999999999999998766666666655
No 447
>PLN02165 adenylate isopentenyltransferase
Probab=96.22 E-value=0.0042 Score=66.87 Aligned_cols=32 Identities=25% Similarity=0.535 Sum_probs=28.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
.++++++|+||+|+|||+||..||..++..++
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eII 72 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEII 72 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCcee
Confidence 56778999999999999999999999876544
No 448
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.22 E-value=0.0044 Score=62.01 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=31.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++|.||+|+|||||+++|+..+...-..+.+.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 61 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKN 61 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 56789999999999999999999998766666666555
No 449
>PF13479 AAA_24: AAA domain
Probab=96.22 E-value=0.011 Score=60.13 Aligned_cols=74 Identities=22% Similarity=0.207 Sum_probs=39.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc-cchhhhccCccccccCCcchHHHHHhh---cCCCCcEEEEec
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV-KDEADIRGHRRTYIGSMPGRLIDGLKR---VGVCNPVMLLDE 315 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~-~~~s~l~g~~~~yvG~~~g~l~~~~~~---a~~~~~VlllDE 315 (728)
+-.++++||||+|||++|..+ + +...+++.+- .....+.....-.+- ....+.+++.. ....-.+|+||-
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~-k~l~id~E~g~~~~~~~~~~~~i~i~-s~~~~~~~~~~l~~~~~~y~tiVIDs 76 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----P-KPLFIDTENGSDSLKFLDDGDVIPIT-SWEDFLEALDELEEDEADYDTIVIDS 76 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----C-CeEEEEeCCCccchhhhcCCCeeCcC-CHHHHHHHHHHHHhccCCCCEEEEEC
Confidence 346899999999999999888 3 3334554332 111111011100011 22344444422 222334999998
Q ss_pred cccc
Q 004834 316 IDKT 319 (728)
Q Consensus 316 idkl 319 (728)
++.+
T Consensus 77 is~~ 80 (213)
T PF13479_consen 77 ISWL 80 (213)
T ss_pred HHHH
Confidence 8887
No 450
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.21 E-value=0.0034 Score=61.55 Aligned_cols=48 Identities=25% Similarity=0.465 Sum_probs=39.5
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 286 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~ 286 (728)
.+|..+.++||||.||||+.|.|.......-..+.+.+ ++.+.+.+..
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~-~dl~~l~~~~ 73 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNG-HDLSRLKGRE 73 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECC-eecccccccc
Confidence 56778889999999999999999999988888888887 5556555443
No 451
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.0047 Score=60.90 Aligned_cols=38 Identities=29% Similarity=0.491 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+++.||+|+|||||+++|+..+...-..+.+.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 61 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDG 61 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 56789999999999999999999988765556666554
No 452
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.20 E-value=0.015 Score=63.47 Aligned_cols=29 Identities=28% Similarity=0.536 Sum_probs=25.6
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRK 267 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~ 267 (728)
.+.+++++||+|+||||+++++...+...
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~ 189 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQ 189 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCC
Confidence 56689999999999999999999988653
No 453
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.19 E-value=0.0035 Score=63.84 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.+.||+|||||||...++....+....+.+.+
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g 66 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLING 66 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 57889999999999999999999988877767766655
No 454
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.19 E-value=0.0046 Score=63.70 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=32.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++|.||+|+|||||+++|+..+...-..+.+.+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 70 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNG 70 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 56789999999999999999999998766667776655
No 455
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.19 E-value=0.0043 Score=62.90 Aligned_cols=38 Identities=32% Similarity=0.540 Sum_probs=31.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||++.|+..+...-.++.+.+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g 63 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAG 63 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 56789999999999999999999988766566666655
No 456
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.19 E-value=0.0046 Score=62.32 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=32.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.+.||+|+|||||++.|+..+...-..+.+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 61 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 56789999999999999999999998766666666655
No 457
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=96.18 E-value=0.038 Score=54.97 Aligned_cols=68 Identities=15% Similarity=0.303 Sum_probs=56.3
Q ss_pred EEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeE----------
Q 004834 310 VMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEV---------- 379 (728)
Q Consensus 310 VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~v---------- 379 (728)
.+++|++|++.... +|+||..|++- ..+++||..|+.+..+.|.+++||.+
T Consensus 57 k~iI~~a~~l~~~A----~NaLLK~LEEP---------------p~~~~fiL~t~~~~~llpTI~SRc~~~~~~~~~~~~ 117 (206)
T PRK08485 57 KIIVIAAPSYGIEA----QNALLKILEEP---------------PKNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPVK 117 (206)
T ss_pred EEEEEchHhhCHHH----HHHHHHHhcCC---------------CCCeEEEEEeCChHhCchHHHhhheecccccccccc
Confidence 45688999998766 89999999852 45678999999999999999999986
Q ss_pred ---EEcCCCCHHHHHHHHHH
Q 004834 380 ---IELPGYTPEEKLRIAMR 396 (728)
Q Consensus 380 ---I~~~~~t~ee~~~Il~~ 396 (728)
+.+..++.++....++.
T Consensus 118 ~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 118 PLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred ccccccCCCCHHHHHHHHHH
Confidence 66788888888777665
No 458
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.18 E-value=0.0043 Score=64.09 Aligned_cols=38 Identities=21% Similarity=0.476 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++|+||+|+|||||++.|+..+...-..+.+.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 62 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDG 62 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECC
Confidence 57889999999999999999999988765556665554
No 459
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.17 E-value=0.0035 Score=61.66 Aligned_cols=27 Identities=30% Similarity=0.594 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
|..++|+||||+||||+++.|++....
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcc
Confidence 356899999999999999999987644
No 460
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.17 E-value=0.0039 Score=63.58 Aligned_cols=38 Identities=29% Similarity=0.504 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++|+||+|+|||||++.|+..+...-..+.+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 61 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDG 61 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 57789999999999999999999988766556666555
No 461
>PLN02674 adenylate kinase
Probab=96.17 E-value=0.0073 Score=62.55 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
+.+.++|.||||+||||+++.||+.++.. .++++.
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~--his~Gd 64 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLC--HLATGD 64 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCc--EEchhH
Confidence 34679999999999999999999998754 444444
No 462
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.17 E-value=0.014 Score=62.95 Aligned_cols=88 Identities=20% Similarity=0.268 Sum_probs=47.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhC--CCeEEEecCCccchhhhccCccccccC---CcchHHHHHhhcCCCCc-EEEE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALG--RKFIRISLGGVKDEADIRGHRRTYIGS---MPGRLIDGLKRVGVCNP-VMLL 313 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~--~~~~~i~~~~~~~~s~l~g~~~~yvG~---~~g~l~~~~~~a~~~~~-Vlll 313 (728)
+.+++++||+|+||||+++++...+. .+-.++-. ..+..++....+..+.. ..-...++++.+-..+| .+++
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivt--iEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~Iiv 221 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVI--LEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIV 221 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEE--ecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEE
Confidence 45799999999999999999998873 22223221 12233333211111111 11123344444333444 8999
Q ss_pred ecccccCCCCCCCHHHHHHHhcC
Q 004834 314 DEIDKTGSDVRGDPASALLEVLD 336 (728)
Q Consensus 314 DEidkl~~~~~~~~~~~Ll~~Ld 336 (728)
.|+-.- ....+++.+.
T Consensus 222 GEiRg~-------ea~~~l~a~~ 237 (323)
T PRK13833 222 GEVRDG-------AALTLLKAWN 237 (323)
T ss_pred eecCCH-------HHHHHHHHHc
Confidence 998532 1344566654
No 463
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.16 E-value=0.0049 Score=62.47 Aligned_cols=38 Identities=37% Similarity=0.540 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++|.||+|+|||||++.|+..+......+.+.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g 61 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGG 61 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 57889999999999999999999998766666666655
No 464
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.15 E-value=0.0045 Score=63.09 Aligned_cols=38 Identities=21% Similarity=0.410 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.+.||+|+|||||++.|+..+......+.+.+
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g 66 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNG 66 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 57889999999999999999999998866666666655
No 465
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.15 E-value=0.0051 Score=61.79 Aligned_cols=38 Identities=32% Similarity=0.369 Sum_probs=32.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++|.||+|+|||||++.|+.........+.+.+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g 62 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER 62 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECC
Confidence 57889999999999999999999998766666676655
No 466
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.15 E-value=0.0046 Score=62.98 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||+++|+......-..+.+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 63 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYING 63 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 56789999999999999999999998766566666554
No 467
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.14 E-value=0.0052 Score=60.55 Aligned_cols=38 Identities=26% Similarity=0.479 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.+.||+|+|||||++.++.........+.+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g 63 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDG 63 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECC
Confidence 57789999999999999999999998866566666655
No 468
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.14 E-value=0.005 Score=62.68 Aligned_cols=29 Identities=41% Similarity=0.633 Sum_probs=24.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
.++++||||+||||+++.||+.++...+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 37899999999999999999999755443
No 469
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.14 E-value=0.012 Score=64.55 Aligned_cols=82 Identities=27% Similarity=0.345 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCCCChhHHH-HHHHHHh----CCCeEEEecCCccc--------hhhhccCccccccCCcchHHHHHhhcC
Q 004834 239 RGPVLCFVGPPGVGKTSLA-SSIASAL----GRKFIRISLGGVKD--------EADIRGHRRTYIGSMPGRLIDGLKRVG 305 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~La-kalA~~l----~~~~~~i~~~~~~~--------~s~l~g~~~~yvG~~~g~l~~~~~~a~ 305 (728)
++.++.|+||+|+||||+. |.-|+.. .....-|....++- .+++.|-+- -+-+.+..+.+++....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~-~vv~~~~el~~ai~~l~ 280 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL-EVVYSPKELAEAIEALR 280 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce-EEecCHHHHHHHHHHhh
Confidence 4779999999999999655 4444444 12334444444321 223333331 13333445555555443
Q ss_pred CCCcEEEEecccccCCC
Q 004834 306 VCNPVMLLDEIDKTGSD 322 (728)
Q Consensus 306 ~~~~VlllDEidkl~~~ 322 (728)
. ..+||+|=+.+-+.+
T Consensus 281 ~-~d~ILVDTaGrs~~D 296 (407)
T COG1419 281 D-CDVILVDTAGRSQYD 296 (407)
T ss_pred c-CCEEEEeCCCCCccC
Confidence 3 268888877665444
No 470
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.14 E-value=0.0049 Score=60.47 Aligned_cols=28 Identities=39% Similarity=0.672 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
.++..+.|.|+||+||||+++.++..+.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999884
No 471
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=96.13 E-value=0.0038 Score=63.10 Aligned_cols=38 Identities=32% Similarity=0.554 Sum_probs=34.5
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|.++++.||+|+||||+.++|+......-.+|.+.|
T Consensus 27 ~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G 64 (237)
T COG0410 27 ERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDG 64 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECC
Confidence 57889999999999999999999999987778888877
No 472
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.005 Score=63.66 Aligned_cols=38 Identities=34% Similarity=0.524 Sum_probs=32.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++|.||+|+|||||++.|+..+...-..+.+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 63 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGG 63 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 57789999999999999999999998766666676655
No 473
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.0048 Score=62.94 Aligned_cols=38 Identities=29% Similarity=0.463 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||++.|+..+...-..+.+.+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 65 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDG 65 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 46789999999999999999999988766666666655
No 474
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.13 E-value=0.0048 Score=67.67 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=33.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++|+||+|||||||.++||.........+.+.+
T Consensus 30 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g 67 (351)
T PRK11432 30 KQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDG 67 (351)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECC
Confidence 56789999999999999999999999877778887776
No 475
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.12 E-value=0.014 Score=66.74 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
+...++++||+|+||||+..++-..+..
T Consensus 241 ~~GlilitGptGSGKTTtL~a~L~~l~~ 268 (486)
T TIGR02533 241 PHGIILVTGPTGSGKTTTLYAALSRLNT 268 (486)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHhccCC
Confidence 3447899999999999999988777754
No 476
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.12 E-value=0.0044 Score=63.64 Aligned_cols=38 Identities=39% Similarity=0.610 Sum_probs=32.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++|+||+|+|||||+++|+..+...-..+.+.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 61 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDG 61 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECC
Confidence 57889999999999999999999998866666666655
No 477
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.12 E-value=0.0058 Score=58.50 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 004834 242 VLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l 264 (728)
+++|+|+||+||||+|+.++..+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999998
No 478
>PRK10867 signal recognition particle protein; Provisional
Probab=96.12 E-value=0.12 Score=58.21 Aligned_cols=40 Identities=28% Similarity=0.396 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHh----CCCeEEEecCCccc
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASAL----GRKFIRISLGGVKD 278 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l----~~~~~~i~~~~~~~ 278 (728)
++..++|+||||+||||++-.+|..+ +.....+++..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 34589999999999999988888766 44556677665543
No 479
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.12 E-value=0.012 Score=57.68 Aligned_cols=78 Identities=21% Similarity=0.255 Sum_probs=46.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccch---hhhccC----cccccc-CCcchHHHHHhhcCCCCcEEEE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDE---ADIRGH----RRTYIG-SMPGRLIDGLKRVGVCNPVMLL 313 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~---s~l~g~----~~~yvG-~~~g~l~~~~~~a~~~~~Vlll 313 (728)
.+++.||||+|||++|..++..++.+.+.+.-+...+. ..+..| +..|.- ..+..+.+.+........++++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~VlI 82 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVLV 82 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEEe
Confidence 58899999999999999999998776665554333222 122111 112211 1223455655542223448888
Q ss_pred eccccc
Q 004834 314 DEIDKT 319 (728)
Q Consensus 314 DEidkl 319 (728)
|-+..+
T Consensus 83 D~Lt~~ 88 (170)
T PRK05800 83 DCLTTW 88 (170)
T ss_pred hhHHHH
Confidence 876665
No 480
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.11 E-value=0.0082 Score=60.44 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=19.0
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHh
Q 004834 241 PVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l 264 (728)
+.+.+.||.|||||.||-+.|..+
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999999988655
No 481
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.11 E-value=0.0045 Score=63.79 Aligned_cols=38 Identities=29% Similarity=0.447 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++|+||+|+|||||+++|+..+......+.+.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 61 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDG 61 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECC
Confidence 56789999999999999999999988766566666655
No 482
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.10 E-value=0.005 Score=62.10 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.+.||+|+|||||++.|+..+......+.+.+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g 62 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQG 62 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 57789999999999999999999998876666666655
No 483
>PRK13764 ATPase; Provisional
Probab=96.10 E-value=0.0092 Score=69.32 Aligned_cols=29 Identities=28% Similarity=0.523 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRK 267 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~ 267 (728)
.+.+++++||||+||||++++++..+...
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~ 284 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADM 284 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhC
Confidence 34579999999999999999999998644
No 484
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.09 E-value=0.0044 Score=62.82 Aligned_cols=38 Identities=34% Similarity=0.476 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||++.|+..+...-..+.+.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g 60 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECC
Confidence 57789999999999999999999988765556666554
No 485
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.08 E-value=0.0048 Score=63.17 Aligned_cols=38 Identities=34% Similarity=0.488 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.++||+|+|||||.+.|+..+......+.+.+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 66 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDG 66 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 57889999999999999999999998766666666655
No 486
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.08 E-value=0.0057 Score=62.69 Aligned_cols=38 Identities=29% Similarity=0.449 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|.||+|+|||||++.|+..+...-..+.+.+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g 71 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVG 71 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECC
Confidence 57889999999999999999999998766666666655
No 487
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.07 E-value=0.0056 Score=63.37 Aligned_cols=38 Identities=26% Similarity=0.465 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|.||+|+|||||++.|+......-..+.+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 63 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAG 63 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 57889999999999999999999988766667777665
No 488
>PF02190 LON: ATP-dependent protease La (LON) domain; InterPro: IPR003111 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature defines the N-terminal domain of the archael, bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). In the eukaryotes the majority of the proteins are located in the mitochondrial matrix [, ]. In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response [].; GO: 0004176 ATP-dependent peptidase activity, 0006508 proteolysis; PDB: 3LJC_A 2ANE_G 1ZBO_A 3M65_A.
Probab=96.07 E-value=0.018 Score=57.60 Aligned_cols=54 Identities=26% Similarity=0.238 Sum_probs=42.1
Q ss_pred chHHHHHHHccCChhHHHHHHHhcCCCCHHHHHHhhhccCHHHHHHHHHHHHHH
Q 004834 39 TGGRTKVLLETVPIHKLADIFVASFEISFEEQLVMLDSVDLKVRLSKATELVDR 92 (728)
Q Consensus 39 ~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~lLd~~~~~~r~~~~~~~l~~ 92 (728)
+.+....+.+.++|..|+|.+++.++++++++|.+|++.++.+|++..+++|++
T Consensus 152 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ek~~lL~~~~~~~Rl~~l~~~L~~ 205 (205)
T PF02190_consen 152 PWDLLLKINNPDNPPELADFVASLLPLSPEEKQELLETDDLKERLKLLIELLKK 205 (205)
T ss_dssp CHHHHHHTTTHHHHHHHHHHHHHHS---HHHHHHHHC--SHHHHHHHHHHHHH-
T ss_pred chhhhhhhhccCCHHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 345555567788889999999999999999999999999999999999998874
No 489
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.07 E-value=0.016 Score=62.62 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.+.+++++||+|+||||++++++..+
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999999874
No 490
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.07 E-value=0.0057 Score=62.35 Aligned_cols=38 Identities=29% Similarity=0.530 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||++.|+..+......+.+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g 61 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAG 61 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 46789999999999999999999988766566666655
No 491
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.06 E-value=0.0057 Score=62.67 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.++||+|+|||||++.|+......-..+.+.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 68 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEG 68 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECC
Confidence 57889999999999999999999987765556666554
No 492
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.05 E-value=0.0054 Score=64.23 Aligned_cols=38 Identities=37% Similarity=0.579 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.++||+|+|||||+++|+..+......+.+.|
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 62 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDG 62 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 56889999999999999999999988766566666655
No 493
>PRK05439 pantothenate kinase; Provisional
Probab=96.05 E-value=0.048 Score=58.54 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCC-----CeEEEecCCccch
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGR-----KFIRISLGGVKDE 279 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~-----~~~~i~~~~~~~~ 279 (728)
.+-.+.+.||||+||||+|+.|+..++. ....+.+.+++-.
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~ 130 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYP 130 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccC
Confidence 3447889999999999999999998743 4567777776543
No 494
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.05 E-value=0.011 Score=62.33 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
..|.++++.|-+|+|||||+|++-+........+.+.+
T Consensus 52 ~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g 89 (386)
T COG4175 52 EEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDG 89 (386)
T ss_pred cCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECC
Confidence 56789999999999999999999998877666665554
No 495
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.05 E-value=0.0059 Score=63.03 Aligned_cols=38 Identities=29% Similarity=0.468 Sum_probs=31.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.++||+|+|||||++.|+......-..+.+.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g 62 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAG 62 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC
Confidence 57889999999999999999999988766666666655
No 496
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.04 E-value=0.0063 Score=62.35 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 004834 243 LCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 243 lLL~GPpGtGKT~LakalA~~l 264 (728)
+++.|+||+|||++++.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 3689999999999999999874
No 497
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.006 Score=61.85 Aligned_cols=38 Identities=34% Similarity=0.483 Sum_probs=32.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.++||+|+|||||++.|+..+...-..+.+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g 61 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDG 61 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 56789999999999999999999998766666666655
No 498
>PRK14526 adenylate kinase; Provisional
Probab=96.04 E-value=0.0063 Score=61.84 Aligned_cols=27 Identities=37% Similarity=0.709 Sum_probs=23.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCe
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKF 268 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~ 268 (728)
.++|+||||+||||+++.+|+.++.++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~ 28 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYH 28 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 478999999999999999999886544
No 499
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.03 E-value=0.0061 Score=59.16 Aligned_cols=29 Identities=41% Similarity=0.751 Sum_probs=25.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
.+++.|+||+||||+|+.+++.++.+++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 57899999999999999999999877643
No 500
>PLN02199 shikimate kinase
Probab=96.03 E-value=0.0065 Score=64.19 Aligned_cols=34 Identities=29% Similarity=0.530 Sum_probs=30.7
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
++.+++|+|++|+|||++++.+|+.++.+|+..+
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 4678999999999999999999999999988654
Done!