Query 004834
Match_columns 728
No_of_seqs 626 out of 5311
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 07:17:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m6a_A ATP-dependent protease 100.0 2.5E-87 8.5E-92 769.1 41.3 531 138-723 7-537 (543)
2 3k1j_A LON protease, ATP-depen 100.0 5.3E-54 1.8E-58 499.7 20.0 351 308-718 202-579 (604)
3 1rre_A ATP-dependent protease 100.0 1.1E-42 3.7E-47 345.7 19.7 186 530-719 5-190 (200)
4 2x36_A LON protease homolog, m 100.0 5.7E-42 1.9E-46 341.8 17.6 186 530-719 4-198 (207)
5 1xhk_A Putative protease LA ho 100.0 1.7E-37 5.9E-42 306.3 18.0 176 533-717 3-185 (187)
6 1z0w_A Putative protease LA ho 100.0 2.1E-37 7.3E-42 309.4 16.4 176 532-718 8-188 (207)
7 1qvr_A CLPB protein; coiled co 100.0 4.4E-29 1.5E-33 301.2 21.9 393 65-489 376-840 (854)
8 3pxi_A Negative regulator of g 100.0 5.9E-28 2E-32 288.1 26.9 352 65-491 369-747 (758)
9 1r6b_X CLPA protein; AAA+, N-t 100.0 8.8E-28 3E-32 286.8 26.9 310 146-489 387-736 (758)
10 4b4t_K 26S protease regulatory 99.9 2E-28 6.8E-33 270.1 10.1 230 187-454 146-397 (428)
11 1g41_A Heat shock protein HSLU 99.9 4.2E-27 1.4E-31 260.1 19.9 235 203-452 5-412 (444)
12 4b4t_J 26S protease regulatory 99.9 6.8E-27 2.3E-31 254.4 16.7 209 208-454 143-372 (405)
13 4b4t_I 26S protease regulatory 99.9 3.7E-26 1.3E-30 249.2 17.9 208 209-454 178-406 (437)
14 4b4t_M 26S protease regulatory 99.9 7.7E-26 2.6E-30 249.6 17.6 207 210-454 178-405 (434)
15 4b4t_H 26S protease regulatory 99.9 1.4E-25 4.6E-30 247.0 15.9 209 208-454 204-433 (467)
16 4b4t_L 26S protease subunit RP 99.9 2E-25 7E-30 246.5 16.8 208 209-454 177-405 (437)
17 4fcw_A Chaperone protein CLPB; 99.9 1E-23 3.5E-28 224.3 23.0 260 201-492 5-302 (311)
18 3hws_A ATP-dependent CLP prote 99.9 5E-24 1.7E-28 232.5 15.4 238 204-449 6-324 (363)
19 1xwi_A SKD1 protein; VPS4B, AA 99.9 2.7E-22 9.3E-27 215.3 20.7 207 213-455 12-234 (322)
20 3cf2_A TER ATPase, transitiona 99.9 6.3E-24 2.2E-28 250.0 7.9 264 212-525 476-762 (806)
21 1um8_A ATP-dependent CLP prote 99.9 6.7E-22 2.3E-26 216.7 20.6 240 203-450 11-342 (376)
22 1ofh_A ATP-dependent HSL prote 99.9 1.1E-21 3.9E-26 207.9 17.7 233 202-450 4-276 (310)
23 3eie_A Vacuolar protein sortin 99.9 5.6E-22 1.9E-26 212.8 15.3 207 213-455 18-239 (322)
24 2zan_A Vacuolar protein sortin 99.9 4.8E-21 1.7E-25 214.4 20.4 207 213-455 134-356 (444)
25 2qp9_X Vacuolar protein sortin 99.9 1.6E-21 5.5E-26 212.1 15.9 206 213-454 51-271 (355)
26 3cf2_A TER ATPase, transitiona 99.9 1.7E-21 5.9E-26 229.3 14.8 208 210-455 201-426 (806)
27 3syl_A Protein CBBX; photosynt 99.8 1.2E-20 4.1E-25 200.5 14.5 226 192-453 10-268 (309)
28 3t15_A Ribulose bisphosphate c 99.8 4.3E-20 1.5E-24 195.5 18.0 215 214-454 8-241 (293)
29 3vfd_A Spastin; ATPase, microt 99.8 6.6E-20 2.3E-24 201.8 17.8 206 214-454 116-336 (389)
30 3cf0_A Transitional endoplasmi 99.8 2.1E-20 7.3E-25 198.6 12.3 204 213-454 15-239 (301)
31 3d8b_A Fidgetin-like protein 1 99.8 8.6E-20 2.9E-24 198.6 16.6 207 213-454 84-305 (357)
32 3b9p_A CG5977-PA, isoform A; A 99.8 8.8E-20 3E-24 192.9 16.1 208 213-454 21-243 (297)
33 2qz4_A Paraplegin; AAA+, SPG7, 99.8 1.4E-19 4.8E-24 187.3 15.1 205 213-454 6-232 (262)
34 3hu3_A Transitional endoplasmi 99.8 7E-20 2.4E-24 206.6 12.3 205 212-454 203-425 (489)
35 3h4m_A Proteasome-activating n 99.8 2.7E-19 9.4E-24 187.8 15.9 207 213-454 17-241 (285)
36 1lv7_A FTSH; alpha/beta domain 99.8 1.1E-18 3.7E-23 180.8 19.7 203 213-454 12-235 (257)
37 2ce7_A Cell division protein F 99.8 6.3E-19 2.2E-23 197.4 18.8 204 213-454 16-239 (476)
38 2x8a_A Nuclear valosin-contain 99.8 1.2E-18 4.3E-23 182.4 15.8 207 212-454 9-236 (274)
39 1ypw_A Transitional endoplasmi 99.8 2.4E-20 8.1E-25 222.8 -1.3 206 211-454 475-701 (806)
40 2dhr_A FTSH; AAA+ protein, hex 99.8 7.4E-18 2.5E-22 189.8 17.4 202 213-453 31-253 (499)
41 3pfi_A Holliday junction ATP-d 99.8 1.4E-17 4.9E-22 179.2 18.9 199 214-445 30-232 (338)
42 2r62_A Cell division protease 99.7 5.9E-19 2E-23 183.7 2.4 201 213-450 11-232 (268)
43 1ixz_A ATP-dependent metallopr 99.7 4.1E-17 1.4E-21 168.6 16.2 202 214-454 17-239 (254)
44 2r44_A Uncharacterized protein 99.7 1.5E-16 5.1E-21 170.8 18.6 203 204-427 18-239 (331)
45 3uk6_A RUVB-like 2; hexameric 99.7 1.2E-16 4.3E-21 173.7 17.1 199 214-443 45-306 (368)
46 1iy2_A ATP-dependent metallopr 99.7 2.4E-16 8.2E-21 165.2 17.5 203 213-454 40-263 (278)
47 1hqc_A RUVB; extended AAA-ATPa 99.7 2.6E-16 9E-21 167.9 17.3 198 214-443 13-214 (324)
48 3pvs_A Replication-associated 99.7 1.8E-16 6.3E-21 177.0 15.2 187 214-444 27-219 (447)
49 3u61_B DNA polymerase accessor 99.7 2.1E-16 7E-21 169.2 12.7 187 214-443 27-219 (324)
50 2bjv_A PSP operon transcriptio 99.7 4.2E-16 1.4E-20 162.0 14.4 213 214-444 7-237 (265)
51 1qzm_A ATP-dependent protease 99.7 2.1E-16 7.3E-21 135.8 10.0 93 383-524 1-94 (94)
52 1ojl_A Transcriptional regulat 99.7 5.4E-16 1.8E-20 164.9 15.4 213 213-444 2-232 (304)
53 1d2n_A N-ethylmaleimide-sensit 99.7 1.6E-16 5.6E-21 165.8 10.3 195 212-445 32-247 (272)
54 3ljc_A ATP-dependent protease 99.7 1.3E-15 4.3E-20 157.5 16.5 121 12-134 131-251 (252)
55 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 3.5E-16 1.2E-20 176.4 12.4 207 202-427 11-238 (500)
56 2c9o_A RUVB-like 1; hexameric 99.6 2E-15 6.9E-20 169.5 18.1 63 212-275 36-100 (456)
57 3te6_A Regulatory protein SIR3 99.6 1.2E-15 4.2E-20 162.1 14.7 213 215-451 22-286 (318)
58 2chg_A Replication factor C sm 99.6 3E-15 1E-19 149.3 15.8 183 214-444 18-208 (226)
59 2chq_A Replication factor C sm 99.6 2.3E-15 7.8E-20 159.7 14.6 196 191-444 5-208 (319)
60 3pxg_A Negative regulator of g 99.6 3.5E-15 1.2E-19 168.0 16.7 186 214-448 181-382 (468)
61 1g8p_A Magnesium-chelatase 38 99.6 4.3E-15 1.5E-19 160.1 16.2 212 214-443 25-298 (350)
62 1iqp_A RFCS; clamp loader, ext 99.6 4E-15 1.4E-19 158.4 14.1 196 189-442 11-214 (327)
63 1sxj_D Activator 1 41 kDa subu 99.6 3E-15 1E-19 161.4 11.0 208 189-443 23-238 (353)
64 1ypw_A Transitional endoplasmi 99.6 3.3E-15 1.1E-19 178.4 12.2 205 212-454 203-425 (806)
65 1l8q_A Chromosomal replication 99.6 7.5E-15 2.6E-19 157.1 11.3 170 239-446 36-214 (324)
66 3pxi_A Negative regulator of g 99.5 2.8E-14 9.6E-19 170.1 16.3 164 214-426 181-360 (758)
67 2qby_B CDC6 homolog 3, cell di 99.5 4.2E-14 1.4E-18 154.2 16.3 201 213-442 20-247 (384)
68 1njg_A DNA polymerase III subu 99.5 7.1E-14 2.4E-18 140.9 16.5 191 214-440 24-228 (250)
69 1sxj_B Activator 1 37 kDa subu 99.5 1.8E-14 6.2E-19 153.0 12.7 182 214-444 22-213 (323)
70 3f9v_A Minichromosome maintena 99.5 2.8E-15 9.6E-20 173.2 6.0 221 206-441 288-561 (595)
71 1jbk_A CLPB protein; beta barr 99.5 1.3E-14 4.6E-19 141.1 8.8 153 212-394 21-194 (195)
72 1sxj_C Activator 1 40 kDa subu 99.5 5.2E-14 1.8E-18 151.7 13.2 182 190-428 12-202 (340)
73 1sxj_E Activator 1 40 kDa subu 99.5 3.4E-14 1.1E-18 153.6 11.6 204 192-444 3-241 (354)
74 1jr3_A DNA polymerase III subu 99.5 2.4E-13 8.1E-18 147.7 17.6 194 214-443 17-224 (373)
75 1in4_A RUVB, holliday junction 99.5 3.2E-13 1.1E-17 145.4 17.9 198 214-444 26-227 (334)
76 2v1u_A Cell division control p 99.5 1E-13 3.4E-18 150.9 14.0 206 213-440 19-249 (387)
77 1qvr_A CLPB protein; coiled co 99.5 5.4E-14 1.8E-18 169.6 12.9 200 213-448 170-389 (854)
78 1sxj_A Activator 1 95 kDa subu 99.5 1.8E-13 6.2E-18 155.9 16.1 199 214-444 40-256 (516)
79 2z4s_A Chromosomal replication 99.5 6.4E-14 2.2E-18 156.4 9.2 171 240-446 130-312 (440)
80 1a5t_A Delta prime, HOLB; zinc 99.5 1E-12 3.5E-17 141.4 17.4 169 219-428 8-195 (334)
81 3bos_A Putative DNA replicatio 99.5 8.7E-13 3E-17 133.6 15.9 176 219-445 37-222 (242)
82 1r6b_X CLPA protein; AAA+, N-t 99.4 3E-13 1E-17 161.3 14.3 200 213-448 186-406 (758)
83 3dzd_A Transcriptional regulat 99.4 8.3E-13 2.8E-17 143.9 15.2 212 214-444 130-358 (368)
84 2p65_A Hypothetical protein PF 99.4 8.6E-14 3E-18 135.1 6.5 145 212-386 21-187 (187)
85 1fnn_A CDC6P, cell division co 99.4 1.5E-12 5.1E-17 141.9 17.0 192 213-428 17-228 (389)
86 1ny5_A Transcriptional regulat 99.4 2.1E-12 7.1E-17 141.8 16.1 212 214-444 138-367 (387)
87 3n70_A Transport activator; si 99.4 5.2E-13 1.8E-17 125.9 9.3 131 214-385 2-144 (145)
88 2gno_A DNA polymerase III, gam 99.4 1.2E-12 4E-17 139.0 10.8 143 217-398 1-152 (305)
89 2qby_A CDC6 homolog 1, cell di 99.3 6.7E-12 2.3E-16 136.2 14.8 208 213-449 20-250 (386)
90 3f8t_A Predicted ATPase involv 99.3 3.2E-12 1.1E-16 140.4 11.4 197 205-428 206-428 (506)
91 3co5_A Putative two-component 99.3 3.4E-13 1.2E-17 126.8 2.2 131 214-385 5-142 (143)
92 4akg_A Glutathione S-transfera 99.2 1.8E-11 6.2E-16 159.7 11.3 197 240-446 1267-1488(2695)
93 1w5s_A Origin recognition comp 99.0 8.7E-10 3E-14 121.0 10.7 195 213-428 22-250 (412)
94 3vkg_A Dynein heavy chain, cyt 98.9 4.3E-10 1.5E-14 147.5 6.7 196 240-446 1304-1526(3245)
95 4akg_A Glutathione S-transfera 98.7 3.5E-08 1.2E-12 129.2 14.2 136 241-395 646-790 (2695)
96 2kjq_A DNAA-related protein; s 98.7 2.3E-08 8E-13 94.4 8.2 100 239-378 35-140 (149)
97 3ec2_A DNA replication protein 98.7 1.6E-08 5.4E-13 98.2 6.6 123 218-368 19-145 (180)
98 1jr3_D DNA polymerase III, del 98.6 1.2E-07 4E-12 101.9 10.8 160 239-444 17-189 (343)
99 1u0j_A DNA replication protein 98.6 2.2E-07 7.5E-12 95.7 12.1 152 209-395 77-248 (267)
100 1tue_A Replication protein E1; 98.6 1E-07 3.5E-12 94.0 8.7 139 216-386 39-180 (212)
101 3m65_A ATP-dependent protease 98.5 1.6E-07 5.5E-12 93.8 9.3 88 11-100 121-208 (209)
102 2fna_A Conserved hypothetical 98.5 6.4E-07 2.2E-11 95.6 13.1 159 214-398 14-222 (357)
103 2qen_A Walker-type ATPase; unk 98.5 8.8E-07 3E-11 94.4 12.9 180 214-429 13-237 (350)
104 3vkg_A Dynein heavy chain, cyt 98.4 2.5E-06 8.6E-11 112.6 16.5 135 242-395 606-750 (3245)
105 2w58_A DNAI, primosome compone 98.3 7.8E-07 2.7E-11 87.7 8.1 90 220-320 36-128 (202)
106 2qgz_A Helicase loader, putati 98.3 2.1E-07 7.3E-12 98.6 3.8 89 220-320 135-227 (308)
107 2r2a_A Uncharacterized protein 98.3 1.8E-06 6.3E-11 85.4 10.3 131 241-385 6-153 (199)
108 1zbo_A Hypothetical protein BP 98.0 7.3E-06 2.5E-10 81.7 8.0 80 11-98 120-204 (210)
109 1ye8_A Protein THEP1, hypothet 98.0 6.6E-06 2.3E-10 79.9 6.9 25 242-266 2-26 (178)
110 2vhj_A Ntpase P4, P4; non- hyd 98.0 4E-06 1.4E-10 88.4 4.5 73 238-323 121-198 (331)
111 2r8r_A Sensor protein; KDPD, P 97.8 9.3E-05 3.2E-09 74.2 10.7 132 241-393 7-172 (228)
112 3cmw_A Protein RECA, recombina 97.7 3.2E-05 1.1E-09 97.6 8.2 82 239-322 1081-1175(1706)
113 2i3b_A HCR-ntpase, human cance 97.7 4.4E-05 1.5E-09 74.8 6.0 24 241-264 2-25 (189)
114 2orw_A Thymidine kinase; TMTK, 97.6 2.2E-05 7.7E-10 76.5 3.7 26 239-264 2-27 (184)
115 1svm_A Large T antigen; AAA+ f 97.5 0.00021 7.3E-09 77.5 9.1 30 238-267 167-196 (377)
116 2pnl_A Protease VP4; acyl-enzy 97.4 0.00041 1.4E-08 65.5 8.6 72 604-679 101-173 (203)
117 1qhx_A CPT, protein (chloramph 97.3 0.00015 5.3E-09 69.3 5.2 35 240-274 3-37 (178)
118 2eyu_A Twitching motility prot 97.3 8.9E-05 3E-09 76.4 3.2 35 238-272 23-58 (261)
119 2gef_A Protease VP4; birnaviru 97.3 0.00029 9.9E-09 66.5 6.3 58 619-683 131-188 (217)
120 3vaa_A Shikimate kinase, SK; s 97.3 0.0002 6.8E-09 70.3 5.0 33 238-270 23-55 (199)
121 3trf_A Shikimate kinase, SK; a 97.2 0.00021 7.1E-09 68.9 4.9 32 240-271 5-36 (185)
122 3upu_A ATP-dependent DNA helic 97.2 0.0012 4E-08 73.6 11.6 41 217-264 29-69 (459)
123 3jvv_A Twitching mobility prot 97.1 0.00026 8.8E-09 76.3 4.5 28 239-266 122-149 (356)
124 1kag_A SKI, shikimate kinase I 97.1 0.00028 9.6E-09 67.1 4.1 30 240-269 4-33 (173)
125 3kb2_A SPBC2 prophage-derived 97.0 0.00043 1.5E-08 65.5 4.7 29 242-270 3-31 (173)
126 2p5t_B PEZT; postsegregational 97.0 0.00064 2.2E-08 69.4 6.2 36 238-273 30-65 (253)
127 1zp6_A Hypothetical protein AT 97.0 0.00028 9.6E-09 68.3 3.2 35 238-272 7-41 (191)
128 1knq_A Gluconate kinase; ALFA/ 97.0 0.00045 1.6E-08 65.9 4.5 31 238-268 6-36 (175)
129 2iyv_A Shikimate kinase, SK; t 97.0 0.00045 1.5E-08 66.5 4.3 30 241-270 3-32 (184)
130 3iij_A Coilin-interacting nucl 97.0 0.00047 1.6E-08 66.2 4.4 31 239-269 10-40 (180)
131 4eun_A Thermoresistant glucoki 97.0 0.00051 1.8E-08 67.3 4.6 30 238-267 27-56 (200)
132 1via_A Shikimate kinase; struc 97.0 0.00043 1.5E-08 66.2 3.9 29 242-270 6-34 (175)
133 2ewv_A Twitching motility prot 96.9 0.00044 1.5E-08 75.0 4.2 29 238-266 134-162 (372)
134 2rhm_A Putative kinase; P-loop 96.9 0.00053 1.8E-08 66.3 4.4 32 239-270 4-35 (193)
135 2b8t_A Thymidine kinase; deoxy 96.9 0.0029 9.9E-08 63.4 9.9 34 238-271 10-46 (223)
136 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.00057 1.9E-08 72.9 4.8 78 239-318 170-251 (330)
137 1y63_A LMAJ004144AAA protein; 96.9 0.0006 2.1E-08 65.9 4.5 32 238-269 8-40 (184)
138 3c8u_A Fructokinase; YP_612366 96.9 0.0013 4.3E-08 65.0 6.7 39 238-276 20-61 (208)
139 2c95_A Adenylate kinase 1; tra 96.9 0.00064 2.2E-08 65.8 4.5 31 239-269 8-38 (196)
140 2cdn_A Adenylate kinase; phosp 96.9 0.00087 3E-08 65.6 5.4 33 238-270 18-50 (201)
141 1zuh_A Shikimate kinase; alpha 96.9 0.00071 2.4E-08 64.1 4.6 32 240-271 7-38 (168)
142 2vli_A Antibiotic resistance p 96.9 0.00062 2.1E-08 65.3 4.1 31 239-269 4-34 (183)
143 2cvh_A DNA repair and recombin 96.8 0.0017 5.7E-08 64.0 7.3 38 238-275 18-55 (220)
144 2px0_A Flagellar biosynthesis 96.8 0.028 9.4E-07 58.7 16.8 28 238-265 103-130 (296)
145 3cm0_A Adenylate kinase; ATP-b 96.8 0.00055 1.9E-08 65.9 3.4 30 240-269 4-33 (186)
146 1gvn_B Zeta; postsegregational 96.8 0.0016 5.6E-08 67.8 7.2 36 238-273 31-66 (287)
147 1aky_A Adenylate kinase; ATP:A 96.8 0.00083 2.8E-08 66.8 4.7 31 239-269 3-33 (220)
148 3lw7_A Adenylate kinase relate 96.8 0.00076 2.6E-08 63.6 4.2 29 241-270 2-30 (179)
149 3t61_A Gluconokinase; PSI-biol 96.8 0.00096 3.3E-08 65.3 4.8 30 240-269 18-47 (202)
150 1kht_A Adenylate kinase; phosp 96.8 0.00075 2.6E-08 65.0 3.9 26 240-265 3-28 (192)
151 3e1s_A Exodeoxyribonuclease V, 96.8 0.0022 7.6E-08 73.4 8.4 25 240-264 204-228 (574)
152 1z6t_A APAF-1, apoptotic prote 96.7 0.012 4.1E-07 67.4 14.3 45 214-262 125-169 (591)
153 2pez_A Bifunctional 3'-phospho 96.7 0.0012 4.1E-08 63.3 5.0 35 238-272 3-40 (179)
154 1tev_A UMP-CMP kinase; ploop, 96.7 0.00087 3E-08 64.7 4.0 30 240-269 3-32 (196)
155 3uie_A Adenylyl-sulfate kinase 96.7 0.0013 4.3E-08 64.5 5.1 28 238-265 23-50 (200)
156 1e6c_A Shikimate kinase; phosp 96.7 0.00095 3.3E-08 63.3 3.9 29 242-270 4-32 (173)
157 2ze6_A Isopentenyl transferase 96.7 0.00097 3.3E-08 68.2 4.2 30 242-271 3-32 (253)
158 2bwj_A Adenylate kinase 5; pho 96.7 0.0011 3.7E-08 64.4 4.2 30 240-269 12-41 (199)
159 3umf_A Adenylate kinase; rossm 96.7 0.001 3.5E-08 66.4 4.0 31 238-268 27-57 (217)
160 3be4_A Adenylate kinase; malar 96.6 0.001 3.5E-08 66.1 3.9 32 239-270 4-35 (217)
161 1zd8_A GTP:AMP phosphotransfer 96.6 0.0012 3.9E-08 66.1 4.2 31 239-269 6-36 (227)
162 2ga8_A Hypothetical 39.9 kDa p 96.6 0.0013 4.4E-08 70.3 4.6 54 216-271 2-55 (359)
163 3tif_A Uncharacterized ABC tra 96.6 0.0011 3.9E-08 67.0 4.0 38 238-275 29-66 (235)
164 1ak2_A Adenylate kinase isoenz 96.6 0.0015 5.1E-08 65.7 4.8 32 239-270 15-46 (233)
165 1qf9_A UMP/CMP kinase, protein 96.6 0.0014 4.9E-08 63.0 4.4 30 240-269 6-35 (194)
166 2pt5_A Shikimate kinase, SK; a 96.6 0.0016 5.5E-08 61.4 4.6 29 242-270 2-30 (168)
167 1zak_A Adenylate kinase; ATP:A 96.6 0.0011 3.7E-08 66.1 3.5 31 239-269 4-34 (222)
168 3tr0_A Guanylate kinase, GMP k 96.5 0.0014 4.7E-08 64.0 4.1 27 239-265 6-32 (205)
169 3nwj_A ATSK2; P loop, shikimat 96.5 0.0014 4.8E-08 66.9 4.2 31 240-270 48-78 (250)
170 1ukz_A Uridylate kinase; trans 96.5 0.0017 5.7E-08 63.5 4.6 31 239-269 14-44 (203)
171 2bbw_A Adenylate kinase 4, AK4 96.5 0.0017 6E-08 65.7 4.9 30 239-268 26-55 (246)
172 1htw_A HI0065; nucleotide-bind 96.5 0.0011 3.8E-08 62.7 3.2 37 238-275 31-67 (158)
173 3sr0_A Adenylate kinase; phosp 96.5 0.0015 5.2E-08 64.6 4.2 28 242-269 2-29 (206)
174 1cke_A CK, MSSA, protein (cyti 96.5 0.0016 5.5E-08 64.7 4.5 30 240-269 5-34 (227)
175 3fvq_A Fe(3+) IONS import ATP- 96.5 0.0014 4.8E-08 70.4 4.3 39 238-276 28-66 (359)
176 3dl0_A Adenylate kinase; phosp 96.5 0.0017 5.9E-08 64.1 4.5 30 242-271 2-31 (216)
177 1ly1_A Polynucleotide kinase; 96.5 0.00095 3.2E-08 63.6 2.5 22 242-263 4-25 (181)
178 3cmu_A Protein RECA, recombina 96.5 0.0024 8.2E-08 81.7 6.9 39 238-276 1425-1466(2050)
179 1b0u_A Histidine permease; ABC 96.5 0.0014 4.8E-08 67.4 3.9 38 238-275 30-67 (262)
180 2pcj_A ABC transporter, lipopr 96.5 0.0013 4.3E-08 66.1 3.5 38 238-275 28-65 (224)
181 3tau_A Guanylate kinase, GMP k 96.5 0.0017 5.7E-08 64.2 4.3 29 238-266 6-34 (208)
182 3fb4_A Adenylate kinase; psych 96.5 0.0018 6.2E-08 63.9 4.6 29 242-270 2-30 (216)
183 2a5y_B CED-4; apoptosis; HET: 96.5 0.011 3.8E-07 67.3 11.8 150 216-397 131-305 (549)
184 2og2_A Putative signal recogni 96.5 0.0041 1.4E-07 66.8 7.6 36 238-273 155-190 (359)
185 3dm5_A SRP54, signal recogniti 96.5 0.031 1E-06 61.6 14.6 83 239-321 99-196 (443)
186 1kgd_A CASK, peripheral plasma 96.5 0.0016 5.4E-08 62.7 3.9 27 239-265 4-30 (180)
187 4e22_A Cytidylate kinase; P-lo 96.5 0.0019 6.6E-08 65.9 4.7 32 238-269 25-56 (252)
188 3kl4_A SRP54, signal recogniti 96.4 0.068 2.3E-06 58.7 17.2 81 239-320 96-192 (433)
189 3tlx_A Adenylate kinase 2; str 96.4 0.0021 7.2E-08 65.2 4.7 31 239-269 28-58 (243)
190 2v54_A DTMP kinase, thymidylat 96.4 0.0019 6.6E-08 62.9 4.3 35 239-273 3-38 (204)
191 3rlf_A Maltose/maltodextrin im 96.4 0.0018 6.3E-08 70.0 4.5 38 238-275 27-64 (381)
192 2jaq_A Deoxyguanosine kinase; 96.4 0.0019 6.5E-08 62.8 4.1 28 242-269 2-29 (205)
193 1mv5_A LMRA, multidrug resista 96.4 0.0012 4E-08 67.2 2.6 38 238-275 26-63 (243)
194 3gfo_A Cobalt import ATP-bindi 96.4 0.0017 5.7E-08 67.3 3.7 38 238-275 32-69 (275)
195 1znw_A Guanylate kinase, GMP k 96.4 0.0019 6.5E-08 63.6 4.0 28 238-265 18-45 (207)
196 2olj_A Amino acid ABC transpor 96.4 0.0018 6.3E-08 66.6 3.9 38 238-275 48-85 (263)
197 2wwf_A Thymidilate kinase, put 96.4 0.0012 4.1E-08 64.9 2.4 32 239-270 9-40 (212)
198 1g6h_A High-affinity branched- 96.4 0.0018 6.1E-08 66.4 3.8 38 238-275 31-68 (257)
199 2yyz_A Sugar ABC transporter, 96.4 0.0021 7.2E-08 69.1 4.5 38 238-275 27-64 (359)
200 1nn5_A Similar to deoxythymidy 96.4 0.0014 4.7E-08 64.5 2.8 31 239-269 8-38 (215)
201 2it1_A 362AA long hypothetical 96.4 0.0022 7.4E-08 69.1 4.5 38 238-275 27-64 (362)
202 2plr_A DTMP kinase, probable t 96.3 0.0018 6.3E-08 63.3 3.6 28 240-267 4-31 (213)
203 1ji0_A ABC transporter; ATP bi 96.3 0.0019 6.6E-08 65.4 3.8 38 238-275 30-67 (240)
204 2ixe_A Antigen peptide transpo 96.3 0.002 6.9E-08 66.6 4.0 38 238-275 43-80 (271)
205 2j41_A Guanylate kinase; GMP, 96.3 0.0018 6.2E-08 63.2 3.4 27 238-264 4-30 (207)
206 2qor_A Guanylate kinase; phosp 96.3 0.0018 6.3E-08 63.5 3.5 28 238-265 10-37 (204)
207 2ff7_A Alpha-hemolysin translo 96.3 0.002 6.9E-08 65.6 3.8 38 238-275 33-70 (247)
208 3b9q_A Chloroplast SRP recepto 96.3 0.0041 1.4E-07 65.3 6.3 36 238-273 98-133 (302)
209 1sgw_A Putative ABC transporte 96.3 0.0018 6.2E-08 64.5 3.4 38 238-275 33-70 (214)
210 3r20_A Cytidylate kinase; stru 96.3 0.0026 8.9E-08 64.2 4.5 30 240-269 9-38 (233)
211 1vpl_A ABC transporter, ATP-bi 96.3 0.0021 7.3E-08 65.8 3.9 38 238-275 39-76 (256)
212 1v43_A Sugar-binding transport 96.3 0.0024 8.1E-08 69.0 4.5 38 238-275 35-72 (372)
213 2pbr_A DTMP kinase, thymidylat 96.3 0.0032 1.1E-07 60.6 5.0 31 242-272 2-35 (195)
214 1z47_A CYSA, putative ABC-tran 96.3 0.0023 8E-08 68.6 4.3 38 238-275 39-76 (355)
215 2cbz_A Multidrug resistance-as 96.3 0.0015 5E-08 66.2 2.6 38 238-275 29-66 (237)
216 1jjv_A Dephospho-COA kinase; P 96.3 0.0023 7.7E-08 62.8 3.9 27 242-269 4-30 (206)
217 1e4v_A Adenylate kinase; trans 96.3 0.0026 9E-08 62.9 4.4 29 242-270 2-30 (214)
218 3ake_A Cytidylate kinase; CMP 96.3 0.0031 1.1E-07 61.5 4.9 29 242-270 4-32 (208)
219 1odf_A YGR205W, hypothetical 3 96.3 0.0044 1.5E-07 64.6 6.2 29 238-266 29-57 (290)
220 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0029 9.8E-08 64.8 4.7 33 240-272 4-39 (260)
221 2pze_A Cystic fibrosis transme 96.3 0.0023 7.7E-08 64.4 3.8 38 238-275 32-69 (229)
222 2onk_A Molybdate/tungstate ABC 96.3 0.0026 9E-08 64.5 4.3 37 238-275 23-59 (240)
223 2ihy_A ABC transporter, ATP-bi 96.2 0.0023 7.8E-08 66.5 3.8 38 238-275 45-82 (279)
224 1g29_1 MALK, maltose transport 96.2 0.0026 8.9E-08 68.8 4.3 38 238-275 27-64 (372)
225 1rz3_A Hypothetical protein rb 96.2 0.0072 2.4E-07 59.2 7.2 27 238-264 20-46 (201)
226 3d31_A Sulfate/molybdate ABC t 96.2 0.002 6.8E-08 69.0 3.3 38 238-275 24-61 (348)
227 2qi9_C Vitamin B12 import ATP- 96.2 0.002 6.9E-08 65.7 3.2 37 238-275 24-60 (249)
228 1nks_A Adenylate kinase; therm 96.2 0.0019 6.5E-08 62.1 2.9 24 242-265 3-26 (194)
229 2fz4_A DNA repair protein RAD2 96.2 0.012 4E-07 59.3 8.9 31 242-272 110-140 (237)
230 4g1u_C Hemin import ATP-bindin 96.2 0.0019 6.5E-08 66.6 3.0 38 238-275 35-72 (266)
231 2yz2_A Putative ABC transporte 96.2 0.0026 8.9E-08 65.5 4.0 38 238-275 31-68 (266)
232 1rj9_A FTSY, signal recognitio 96.2 0.0024 8.2E-08 67.2 3.7 37 239-275 101-137 (304)
233 3a00_A Guanylate kinase, GMP k 96.2 0.0024 8.1E-08 61.8 3.3 25 241-265 2-26 (186)
234 2if2_A Dephospho-COA kinase; a 96.2 0.0027 9.3E-08 62.0 3.8 27 242-269 3-29 (204)
235 3hr8_A Protein RECA; alpha and 96.2 0.0081 2.8E-07 64.4 7.7 37 238-274 59-98 (356)
236 2gza_A Type IV secretion syste 96.2 0.0039 1.3E-07 67.2 5.2 38 238-275 173-210 (361)
237 2xb4_A Adenylate kinase; ATP-b 96.2 0.0032 1.1E-07 62.9 4.2 27 242-268 2-28 (223)
238 2pjz_A Hypothetical protein ST 96.1 0.0035 1.2E-07 64.5 4.6 35 240-275 30-64 (263)
239 2zr9_A Protein RECA, recombina 96.1 0.01 3.5E-07 63.5 8.4 38 238-275 59-99 (349)
240 3crm_A TRNA delta(2)-isopenten 96.1 0.0025 8.7E-08 67.3 3.6 32 241-272 6-37 (323)
241 1lvg_A Guanylate kinase, GMP k 96.1 0.0025 8.6E-08 62.4 3.3 27 239-265 3-29 (198)
242 1oxx_K GLCV, glucose, ABC tran 96.1 0.002 6.9E-08 69.2 2.6 38 238-275 29-66 (353)
243 3ney_A 55 kDa erythrocyte memb 96.1 0.0045 1.5E-07 60.8 4.9 28 238-265 17-44 (197)
244 1z6g_A Guanylate kinase; struc 96.1 0.0028 9.7E-08 63.1 3.5 27 238-264 21-47 (218)
245 3sfz_A APAF-1, apoptotic pepti 96.1 0.03 1E-06 69.5 13.6 46 214-263 125-170 (1249)
246 3asz_A Uridine kinase; cytidin 96.1 0.0026 9E-08 62.5 3.3 35 238-272 4-38 (211)
247 1uf9_A TT1252 protein; P-loop, 96.1 0.0033 1.1E-07 61.1 3.9 31 238-269 6-36 (203)
248 1vma_A Cell division protein F 96.1 0.032 1.1E-06 58.5 11.6 28 238-265 102-129 (306)
249 2bdt_A BH3686; alpha-beta prot 96.1 0.0026 8.8E-08 61.4 2.9 24 241-264 3-26 (189)
250 2yvu_A Probable adenylyl-sulfa 96.1 0.0037 1.3E-07 60.2 4.0 29 238-266 11-39 (186)
251 2z0h_A DTMP kinase, thymidylat 96.0 0.005 1.7E-07 59.5 4.9 30 242-271 2-34 (197)
252 3tui_C Methionine import ATP-b 96.0 0.0041 1.4E-07 66.9 4.5 38 238-275 52-89 (366)
253 1q3t_A Cytidylate kinase; nucl 96.0 0.005 1.7E-07 61.9 4.8 32 238-269 14-45 (236)
254 3a8t_A Adenylate isopentenyltr 96.0 0.0023 7.7E-08 68.0 2.3 33 239-271 39-71 (339)
255 1s96_A Guanylate kinase, GMP k 96.0 0.0039 1.3E-07 62.2 3.9 28 238-265 14-41 (219)
256 1xx6_A Thymidine kinase; NESG, 96.0 0.019 6.5E-07 56.0 8.7 35 238-272 6-43 (191)
257 2v3c_C SRP54, signal recogniti 96.0 0.12 4.2E-06 56.7 16.2 35 240-274 99-136 (432)
258 2yhs_A FTSY, cell division pro 96.0 0.0097 3.3E-07 66.3 7.3 36 238-273 291-326 (503)
259 1p9r_A General secretion pathw 96.0 0.0051 1.8E-07 67.5 5.0 35 238-272 165-199 (418)
260 1g5t_A COB(I)alamin adenosyltr 96.0 0.021 7.1E-07 55.8 8.8 119 240-379 28-173 (196)
261 2ghi_A Transport protein; mult 95.9 0.004 1.4E-07 63.9 3.8 37 238-275 44-80 (260)
262 2oap_1 GSPE-2, type II secreti 95.9 0.0057 1.9E-07 68.9 5.3 35 239-273 259-293 (511)
263 3nh6_A ATP-binding cassette SU 95.9 0.0031 1E-07 66.4 2.8 38 238-275 78-115 (306)
264 4a74_A DNA repair and recombin 95.9 0.0037 1.3E-07 62.0 3.2 27 238-264 23-49 (231)
265 3gd7_A Fusion complex of cysti 95.9 0.0036 1.2E-07 68.1 3.3 37 238-275 45-81 (390)
266 4gp7_A Metallophosphoesterase; 95.9 0.0046 1.6E-07 59.0 3.8 23 238-260 7-29 (171)
267 2d2e_A SUFC protein; ABC-ATPas 95.9 0.0035 1.2E-07 64.0 2.9 38 238-275 27-66 (250)
268 2w0m_A SSO2452; RECA, SSPF, un 95.8 0.005 1.7E-07 60.9 4.0 27 238-264 21-47 (235)
269 1vht_A Dephospho-COA kinase; s 95.8 0.0053 1.8E-07 60.7 4.1 29 240-269 4-32 (218)
270 2ehv_A Hypothetical protein PH 95.8 0.0045 1.5E-07 62.2 3.6 25 238-262 28-52 (251)
271 2grj_A Dephospho-COA kinase; T 95.8 0.0061 2.1E-07 59.6 4.2 30 241-270 13-42 (192)
272 2bbs_A Cystic fibrosis transme 95.8 0.004 1.4E-07 65.0 3.0 37 238-274 62-98 (290)
273 3lnc_A Guanylate kinase, GMP k 95.7 0.0038 1.3E-07 62.5 2.6 28 238-265 25-53 (231)
274 1m7g_A Adenylylsulfate kinase; 95.7 0.0052 1.8E-07 60.6 3.6 35 238-272 23-61 (211)
275 1uj2_A Uridine-cytidine kinase 95.7 0.0054 1.9E-07 62.3 3.8 28 240-267 22-49 (252)
276 3e70_C DPA, signal recognition 95.7 0.0065 2.2E-07 64.5 4.5 35 238-272 127-161 (328)
277 1vt4_I APAF-1 related killer D 95.7 0.025 8.5E-07 68.2 9.8 60 214-278 129-194 (1221)
278 2v9p_A Replication protein E1; 95.7 0.0059 2E-07 64.1 4.1 27 238-264 124-150 (305)
279 2zu0_C Probable ATP-dependent 95.7 0.0045 1.5E-07 63.8 3.1 38 238-275 44-83 (267)
280 2jeo_A Uridine-cytidine kinase 95.7 0.0057 1.9E-07 61.9 3.8 30 238-267 23-52 (245)
281 2h92_A Cytidylate kinase; ross 95.7 0.0067 2.3E-07 59.9 4.1 31 240-270 3-33 (219)
282 2qt1_A Nicotinamide riboside k 95.7 0.0041 1.4E-07 61.0 2.5 36 238-274 19-54 (207)
283 2iut_A DNA translocase FTSK; n 95.7 0.024 8.2E-07 64.2 9.0 72 310-395 346-420 (574)
284 3fdi_A Uncharacterized protein 95.6 0.0079 2.7E-07 59.1 4.4 31 240-270 6-36 (201)
285 1w36_D RECD, exodeoxyribonucle 95.6 0.012 4.2E-07 67.7 6.7 25 240-264 164-188 (608)
286 3foz_A TRNA delta(2)-isopenten 95.6 0.0057 2E-07 64.1 3.4 32 239-270 9-40 (316)
287 1u94_A RECA protein, recombina 95.6 0.026 8.8E-07 60.6 8.6 38 238-275 61-101 (356)
288 2nq2_C Hypothetical ABC transp 95.6 0.0061 2.1E-07 62.2 3.6 35 238-272 29-63 (253)
289 3aez_A Pantothenate kinase; tr 95.5 0.0066 2.3E-07 64.0 3.7 29 238-266 88-116 (312)
290 4f4c_A Multidrug resistance pr 95.5 0.023 7.9E-07 71.3 9.0 38 238-275 442-479 (1321)
291 3cmu_A Protein RECA, recombina 95.5 0.0072 2.5E-07 77.4 4.4 83 238-321 1079-1173(2050)
292 1n0w_A DNA repair protein RAD5 95.5 0.0068 2.3E-07 60.6 3.3 26 238-263 22-47 (243)
293 3b85_A Phosphate starvation-in 95.5 0.0081 2.8E-07 59.5 3.8 25 239-263 21-45 (208)
294 3exa_A TRNA delta(2)-isopenten 95.5 0.0056 1.9E-07 64.3 2.7 29 240-268 3-31 (322)
295 3tqc_A Pantothenate kinase; bi 95.4 0.02 7E-07 60.4 7.1 37 240-276 92-133 (321)
296 2ged_A SR-beta, signal recogni 95.4 0.013 4.4E-07 56.2 5.1 27 238-264 46-72 (193)
297 1sq5_A Pantothenate kinase; P- 95.4 0.0082 2.8E-07 63.1 3.7 28 238-265 78-105 (308)
298 1cr0_A DNA primase/helicase; R 95.3 0.0095 3.2E-07 61.9 3.9 28 238-265 33-60 (296)
299 1xp8_A RECA protein, recombina 95.3 0.033 1.1E-06 60.0 8.2 38 238-275 72-112 (366)
300 2j9r_A Thymidine kinase; TK1, 95.2 0.079 2.7E-06 52.4 10.0 35 238-272 26-63 (214)
301 2f1r_A Molybdopterin-guanine d 95.2 0.0062 2.1E-07 58.3 1.9 35 241-275 3-40 (171)
302 2dr3_A UPF0273 protein PH0284; 95.2 0.017 5.7E-07 57.7 5.2 27 238-264 21-47 (247)
303 1ex7_A Guanylate kinase; subst 95.2 0.013 4.5E-07 56.9 4.2 26 243-268 4-29 (186)
304 4eaq_A DTMP kinase, thymidylat 95.2 0.011 3.8E-07 59.3 3.8 29 238-266 24-52 (229)
305 3sop_A Neuronal-specific septi 95.2 0.0097 3.3E-07 61.3 3.4 34 242-275 4-37 (270)
306 2dpy_A FLII, flagellum-specifi 95.2 0.014 4.7E-07 64.5 4.9 39 238-276 155-193 (438)
307 1a7j_A Phosphoribulokinase; tr 95.2 0.012 4.2E-07 61.3 4.2 39 239-277 4-45 (290)
308 1gtv_A TMK, thymidylate kinase 95.2 0.0048 1.6E-07 60.5 1.0 28 242-269 2-29 (214)
309 3d3q_A TRNA delta(2)-isopenten 95.1 0.01 3.4E-07 63.2 3.3 33 241-275 8-40 (340)
310 3zvl_A Bifunctional polynucleo 95.1 0.0088 3E-07 65.7 2.9 29 239-267 257-285 (416)
311 2f6r_A COA synthase, bifunctio 95.1 0.013 4.4E-07 60.8 4.0 27 241-268 76-102 (281)
312 2xxa_A Signal recognition part 95.0 0.42 1.4E-05 52.5 16.2 38 239-276 99-140 (433)
313 1ltq_A Polynucleotide kinase; 95.0 0.01 3.6E-07 61.6 3.2 24 241-264 3-26 (301)
314 1nlf_A Regulatory protein REPA 95.0 0.013 4.3E-07 60.5 3.7 27 238-264 28-54 (279)
315 2obl_A ESCN; ATPase, hydrolase 95.0 0.018 6E-07 61.6 5.0 38 238-275 69-106 (347)
316 2qmh_A HPR kinase/phosphorylas 94.9 0.011 3.9E-07 57.8 2.9 27 239-265 33-59 (205)
317 1x6v_B Bifunctional 3'-phospho 94.9 0.02 6.8E-07 65.8 5.1 75 605-684 445-523 (630)
318 3eph_A TRNA isopentenyltransfe 94.8 0.011 3.9E-07 64.0 3.0 29 240-268 2-30 (409)
319 3vkw_A Replicase large subunit 94.8 0.055 1.9E-06 59.4 8.2 91 238-335 159-258 (446)
320 3b60_A Lipid A export ATP-bind 94.7 0.016 5.4E-07 66.5 4.0 38 238-275 367-404 (582)
321 2ius_A DNA translocase FTSK; n 94.7 0.057 2E-06 60.5 8.3 25 239-263 166-190 (512)
322 3gmt_A Adenylate kinase; ssgci 94.7 0.02 6.8E-07 57.5 4.1 29 241-269 9-37 (230)
323 2yl4_A ATP-binding cassette SU 94.7 0.016 5.6E-07 66.6 3.9 38 238-275 368-405 (595)
324 3b5x_A Lipid A export ATP-bind 94.7 0.017 5.9E-07 66.2 4.0 38 238-275 367-404 (582)
325 2krk_A 26S protease regulatory 94.6 0.036 1.2E-06 46.6 4.9 57 382-454 8-64 (86)
326 2j37_W Signal recognition part 94.6 0.087 3E-06 59.0 9.6 37 239-275 100-139 (504)
327 3kta_A Chromosome segregation 94.6 0.021 7.2E-07 54.4 3.8 25 242-266 28-52 (182)
328 1xjc_A MOBB protein homolog; s 94.6 0.015 5.1E-07 55.6 2.7 33 240-272 4-39 (169)
329 2z43_A DNA repair and recombin 94.5 0.029 9.9E-07 59.3 5.2 27 238-264 105-131 (324)
330 3qf4_B Uncharacterized ABC tra 94.5 0.019 6.5E-07 66.1 4.0 38 238-275 379-416 (598)
331 1tq4_A IIGP1, interferon-induc 94.5 0.014 4.8E-07 63.8 2.6 49 219-271 52-100 (413)
332 3hdt_A Putative kinase; struct 94.5 0.021 7.2E-07 57.1 3.7 31 240-270 14-44 (223)
333 1j8m_F SRP54, signal recogniti 94.4 0.41 1.4E-05 49.7 13.5 36 239-274 97-135 (297)
334 2qm8_A GTPase/ATPase; G protei 94.4 0.033 1.1E-06 59.2 5.2 28 238-265 53-80 (337)
335 2zts_A Putative uncharacterize 94.4 0.039 1.3E-06 55.1 5.4 36 238-273 28-67 (251)
336 3io5_A Recombination and repai 94.4 0.071 2.4E-06 56.0 7.4 26 238-264 27-52 (333)
337 3kw6_A 26S protease regulatory 94.4 0.061 2.1E-06 44.1 5.7 55 383-454 1-56 (78)
338 1pzn_A RAD51, DNA repair and r 94.3 0.018 6.2E-07 61.6 2.8 27 238-264 129-155 (349)
339 4a82_A Cystic fibrosis transme 94.3 0.015 5.2E-07 66.6 2.4 38 238-275 365-402 (578)
340 1np6_A Molybdopterin-guanine d 94.3 0.026 9E-07 54.1 3.7 25 240-264 6-30 (174)
341 1v5w_A DMC1, meiotic recombina 94.2 0.041 1.4E-06 58.6 5.3 27 238-264 120-146 (343)
342 2npi_A Protein CLP1; CLP1-PCF1 94.1 0.021 7.1E-07 63.5 2.9 27 238-264 136-162 (460)
343 1lw7_A Transcriptional regulat 94.1 0.021 7.2E-07 61.3 2.9 29 240-268 170-198 (365)
344 3p32_A Probable GTPase RV1496/ 94.0 0.11 3.7E-06 55.6 8.3 36 238-273 77-115 (355)
345 3qf4_A ABC transporter, ATP-bi 94.0 0.022 7.5E-07 65.4 2.9 39 238-276 367-405 (587)
346 4b3f_X DNA-binding protein smu 94.0 0.041 1.4E-06 63.8 5.2 24 241-264 206-230 (646)
347 1m8p_A Sulfate adenylyltransfe 93.9 0.056 1.9E-06 61.7 6.1 34 239-272 395-432 (573)
348 4edh_A DTMP kinase, thymidylat 93.9 0.026 8.8E-07 56.0 2.9 28 239-266 5-32 (213)
349 3euj_A Chromosome partition pr 93.9 0.024 8.2E-07 63.2 2.9 35 241-275 30-64 (483)
350 1u0l_A Probable GTPase ENGC; p 93.8 0.022 7.6E-07 59.5 2.4 34 240-273 169-202 (301)
351 3cr8_A Sulfate adenylyltranfer 93.8 0.02 6.9E-07 65.0 2.1 29 238-266 367-395 (552)
352 1w4r_A Thymidine kinase; type 93.8 0.17 6E-06 49.2 8.5 34 239-272 19-55 (195)
353 2f9l_A RAB11B, member RAS onco 93.7 0.034 1.2E-06 53.7 3.4 23 242-264 7-29 (199)
354 1nrj_B SR-beta, signal recogni 93.7 0.041 1.4E-06 53.8 4.0 27 238-264 10-36 (218)
355 3cmw_A Protein RECA, recombina 93.7 0.1 3.5E-06 66.2 8.3 37 238-274 730-769 (1706)
356 2yv5_A YJEQ protein; hydrolase 93.7 0.025 8.5E-07 59.2 2.5 32 239-271 164-195 (302)
357 1tf7_A KAIC; homohexamer, hexa 93.7 0.026 8.8E-07 63.9 2.8 28 238-265 37-66 (525)
358 1oix_A RAS-related protein RAB 93.6 0.031 1.1E-06 53.8 2.9 23 242-264 31-53 (191)
359 3v9p_A DTMP kinase, thymidylat 93.6 0.04 1.4E-06 55.2 3.7 28 238-265 23-50 (227)
360 1zu4_A FTSY; GTPase, signal re 93.6 0.037 1.3E-06 58.5 3.6 27 238-264 103-129 (320)
361 1g8f_A Sulfate adenylyltransfe 93.6 0.04 1.4E-06 61.8 4.0 28 239-266 394-421 (511)
362 3lda_A DNA repair protein RAD5 93.6 0.034 1.2E-06 60.6 3.3 27 238-264 176-202 (400)
363 3ozx_A RNAse L inhibitor; ATP 93.5 0.029 1E-06 63.5 2.9 36 238-273 292-327 (538)
364 2axn_A 6-phosphofructo-2-kinas 93.5 0.047 1.6E-06 61.6 4.5 28 241-268 36-63 (520)
365 3tmk_A Thymidylate kinase; pho 93.5 0.073 2.5E-06 52.8 5.3 30 239-268 4-33 (216)
366 3thx_A DNA mismatch repair pro 93.4 0.097 3.3E-06 63.0 7.3 24 240-263 662-685 (934)
367 2ocp_A DGK, deoxyguanosine kin 93.4 0.037 1.3E-06 55.6 3.2 26 240-265 2-27 (241)
368 2rcn_A Probable GTPase ENGC; Y 93.4 0.029 1E-06 60.1 2.5 27 239-265 214-240 (358)
369 3tqf_A HPR(Ser) kinase; transf 93.3 0.038 1.3E-06 52.8 2.9 25 239-263 15-39 (181)
370 2dyk_A GTP-binding protein; GT 93.2 0.043 1.5E-06 50.4 3.0 23 241-263 2-24 (161)
371 2vp4_A Deoxynucleoside kinase; 93.2 0.028 9.7E-07 56.1 1.8 26 238-263 18-43 (230)
372 2wsm_A Hydrogenase expression/ 93.2 0.078 2.7E-06 51.9 5.0 28 239-266 29-56 (221)
373 3lv8_A DTMP kinase, thymidylat 93.1 0.054 1.8E-06 54.6 3.8 28 238-265 25-52 (236)
374 2lkc_A Translation initiation 93.1 0.066 2.2E-06 50.1 4.2 25 238-262 6-30 (178)
375 3bh0_A DNAB-like replicative h 93.1 0.058 2E-06 56.7 4.1 27 238-264 66-92 (315)
376 2wji_A Ferrous iron transport 93.0 0.05 1.7E-06 50.8 3.2 22 241-262 4-25 (165)
377 1bif_A 6-phosphofructo-2-kinas 93.0 0.035 1.2E-06 61.8 2.4 29 240-268 39-67 (469)
378 2q6t_A DNAB replication FORK h 93.0 0.15 5E-06 56.3 7.4 27 238-264 198-224 (444)
379 2zej_A Dardarin, leucine-rich 92.9 0.041 1.4E-06 52.5 2.4 21 242-262 4-24 (184)
380 1yqt_A RNAse L inhibitor; ATP- 92.9 0.045 1.5E-06 62.1 3.2 29 238-266 45-73 (538)
381 1pui_A ENGB, probable GTP-bind 92.8 0.029 9.8E-07 54.5 1.2 25 238-262 24-48 (210)
382 2qag_B Septin-6, protein NEDD5 92.8 0.051 1.7E-06 59.5 3.2 26 238-263 38-65 (427)
383 1p5z_B DCK, deoxycytidine kina 92.7 0.024 8.3E-07 57.8 0.6 28 238-265 22-49 (263)
384 2i1q_A DNA repair and recombin 92.7 0.042 1.5E-06 57.8 2.5 27 238-264 96-122 (322)
385 4tmk_A Protein (thymidylate ki 92.7 0.068 2.3E-06 52.9 3.8 27 239-265 2-28 (213)
386 2www_A Methylmalonic aciduria 92.7 0.06 2.1E-06 57.5 3.6 27 238-264 72-98 (349)
387 3ld9_A DTMP kinase, thymidylat 92.7 0.067 2.3E-06 53.4 3.7 29 238-266 19-47 (223)
388 2gj8_A MNME, tRNA modification 92.6 0.052 1.8E-06 51.2 2.8 25 239-263 3-27 (172)
389 2wjg_A FEOB, ferrous iron tran 92.6 0.06 2.1E-06 51.0 3.2 22 241-262 8-29 (188)
390 1svi_A GTP-binding protein YSX 92.6 0.071 2.4E-06 50.8 3.7 25 238-262 21-45 (195)
391 1z2a_A RAS-related protein RAB 92.6 0.066 2.3E-06 49.4 3.4 23 241-263 6-28 (168)
392 1t9h_A YLOQ, probable GTPase E 92.6 0.018 6.2E-07 60.4 -0.6 33 239-271 172-204 (307)
393 1vec_A ATP-dependent RNA helic 92.6 0.49 1.7E-05 45.5 9.8 18 241-258 41-58 (206)
394 1kao_A RAP2A; GTP-binding prot 92.5 0.069 2.4E-06 49.1 3.4 22 242-263 5-26 (167)
395 1ls1_A Signal recognition part 92.4 0.065 2.2E-06 55.8 3.4 27 239-265 97-123 (295)
396 1tf7_A KAIC; homohexamer, hexa 92.4 0.066 2.3E-06 60.5 3.7 27 238-264 279-305 (525)
397 2aka_B Dynamin-1; fusion prote 92.4 0.11 3.7E-06 53.6 5.1 42 222-263 8-49 (299)
398 2ce2_X GTPase HRAS; signaling 92.4 0.068 2.3E-06 49.0 3.2 22 242-263 5-26 (166)
399 1yqt_A RNAse L inhibitor; ATP- 92.4 0.046 1.6E-06 62.0 2.3 33 238-270 310-342 (538)
400 3ice_A Transcription terminati 92.4 0.089 3E-06 56.7 4.3 29 236-264 170-198 (422)
401 2p67_A LAO/AO transport system 92.3 0.17 5.7E-06 53.8 6.5 27 238-264 54-80 (341)
402 3pqc_A Probable GTP-binding pr 92.3 0.082 2.8E-06 50.2 3.7 26 238-263 21-46 (195)
403 1qde_A EIF4A, translation init 92.3 0.36 1.2E-05 47.2 8.5 24 241-264 52-76 (224)
404 2r6a_A DNAB helicase, replicat 92.3 0.081 2.8E-06 58.6 4.1 27 238-264 201-227 (454)
405 1u8z_A RAS-related protein RAL 92.2 0.079 2.7E-06 48.7 3.4 23 241-263 5-27 (168)
406 3j16_B RLI1P; ribosome recycli 92.2 0.062 2.1E-06 61.7 3.2 31 238-268 101-131 (608)
407 3ozx_A RNAse L inhibitor; ATP 92.2 0.055 1.9E-06 61.3 2.7 30 238-267 23-52 (538)
408 1ek0_A Protein (GTP-binding pr 92.2 0.079 2.7E-06 48.9 3.4 22 242-263 5-26 (170)
409 2nzj_A GTP-binding protein REM 92.2 0.074 2.5E-06 49.5 3.2 22 241-262 5-26 (175)
410 1f2t_A RAD50 ABC-ATPase; DNA d 92.2 0.084 2.9E-06 49.0 3.5 25 240-264 23-47 (149)
411 3thx_B DNA mismatch repair pro 92.1 0.13 4.3E-06 61.8 5.7 25 239-263 672-696 (918)
412 1z0j_A RAB-22, RAS-related pro 92.1 0.082 2.8E-06 48.9 3.4 23 242-264 8-30 (170)
413 3iuy_A Probable ATP-dependent 92.1 0.32 1.1E-05 47.8 7.9 19 240-258 57-75 (228)
414 2fn4_A P23, RAS-related protei 92.1 0.074 2.5E-06 49.8 3.0 24 240-263 9-32 (181)
415 1wms_A RAB-9, RAB9, RAS-relate 92.1 0.083 2.8E-06 49.3 3.4 23 241-263 8-30 (177)
416 1g16_A RAS-related protein SEC 92.0 0.081 2.8E-06 48.9 3.2 22 242-263 5-26 (170)
417 4a1f_A DNAB helicase, replicat 92.0 0.13 4.4E-06 54.7 5.0 27 238-264 44-70 (338)
418 1z08_A RAS-related protein RAB 92.0 0.086 2.9E-06 48.8 3.3 23 241-263 7-29 (170)
419 1qhl_A Protein (cell division 92.0 0.018 6.2E-07 57.7 -1.5 31 243-273 30-60 (227)
420 3q85_A GTP-binding protein REM 91.9 0.078 2.7E-06 49.1 3.0 20 242-261 4-23 (169)
421 1ky3_A GTP-binding protein YPT 91.9 0.088 3E-06 49.3 3.4 24 240-263 8-31 (182)
422 1upt_A ARL1, ADP-ribosylation 91.9 0.089 3.1E-06 48.7 3.4 23 240-262 7-29 (171)
423 3bk7_A ABC transporter ATP-bin 91.9 0.054 1.9E-06 62.2 2.2 31 238-268 380-410 (607)
424 1c1y_A RAS-related protein RAP 91.8 0.093 3.2E-06 48.3 3.4 22 242-263 5-26 (167)
425 1r8s_A ADP-ribosylation factor 91.8 0.094 3.2E-06 48.3 3.4 23 242-264 2-24 (164)
426 1r2q_A RAS-related protein RAB 91.8 0.095 3.3E-06 48.3 3.4 22 242-263 8-29 (170)
427 2erx_A GTP-binding protein DI- 91.7 0.092 3.1E-06 48.5 3.2 21 242-262 5-25 (172)
428 3q72_A GTP-binding protein RAD 91.7 0.075 2.6E-06 49.0 2.6 20 242-261 4-23 (166)
429 3bc1_A RAS-related protein RAB 91.7 0.097 3.3E-06 49.5 3.4 23 241-263 12-34 (195)
430 2hf9_A Probable hydrogenase ni 91.7 0.095 3.2E-06 51.5 3.4 28 239-266 37-64 (226)
431 2gk6_A Regulator of nonsense t 91.6 0.095 3.3E-06 60.5 3.8 24 241-264 196-219 (624)
432 1m2o_B GTP-binding protein SAR 91.5 0.099 3.4E-06 50.1 3.3 24 239-262 22-45 (190)
433 2ffh_A Protein (FFH); SRP54, s 91.5 0.082 2.8E-06 58.0 2.9 28 239-266 97-124 (425)
434 1c9k_A COBU, adenosylcobinamid 91.4 0.11 3.6E-06 50.1 3.3 31 243-274 2-32 (180)
435 2fwr_A DNA repair protein RAD2 91.4 0.67 2.3E-05 51.0 10.4 32 241-272 109-140 (472)
436 1yrb_A ATP(GTP)binding protein 91.4 0.2 6.9E-06 50.4 5.7 35 239-273 13-49 (262)
437 2hxs_A RAB-26, RAS-related pro 91.4 0.095 3.3E-06 49.0 2.9 22 241-262 7-28 (178)
438 3con_A GTPase NRAS; structural 91.4 0.11 3.7E-06 49.4 3.4 22 242-263 23-44 (190)
439 2y8e_A RAB-protein 6, GH09086P 91.3 0.1 3.6E-06 48.6 3.2 23 241-263 15-37 (179)
440 2oil_A CATX-8, RAS-related pro 91.3 0.11 3.8E-06 49.5 3.4 22 242-263 27-48 (193)
441 1m7b_A RND3/RHOE small GTP-bin 91.3 0.096 3.3E-06 49.6 2.9 23 241-263 8-30 (184)
442 3bk7_A ABC transporter ATP-bin 91.3 0.078 2.7E-06 60.9 2.6 29 238-266 115-143 (607)
443 1mky_A Probable GTP-binding pr 91.3 0.22 7.4E-06 54.8 6.1 24 240-263 180-203 (439)
444 1z0f_A RAB14, member RAS oncog 91.3 0.11 3.9E-06 48.3 3.4 24 241-264 16-39 (179)
445 4dsu_A GTPase KRAS, isoform 2B 91.3 0.11 3.9E-06 48.9 3.4 22 242-263 6-27 (189)
446 3tw8_B RAS-related protein RAB 91.1 0.11 3.6E-06 48.6 3.0 22 241-262 10-31 (181)
447 4dzz_A Plasmid partitioning pr 91.1 0.38 1.3E-05 46.3 7.1 74 242-315 3-83 (206)
448 3g5u_A MCG1178, multidrug resi 91.1 0.095 3.3E-06 65.6 3.4 38 238-275 414-451 (1284)
449 2a9k_A RAS-related protein RAL 91.1 0.12 4.1E-06 48.5 3.4 23 241-263 19-41 (187)
450 4ag6_A VIRB4 ATPase, type IV s 91.1 0.19 6.5E-06 54.3 5.4 35 239-273 34-71 (392)
451 3e2i_A Thymidine kinase; Zn-bi 91.1 0.29 9.8E-06 48.4 6.1 35 238-272 26-63 (219)
452 2bme_A RAB4A, RAS-related prot 91.1 0.11 3.9E-06 48.9 3.2 23 241-263 11-33 (186)
453 3clv_A RAB5 protein, putative; 91.1 0.13 4.5E-06 48.9 3.6 24 240-263 7-30 (208)
454 2g6b_A RAS-related protein RAB 91.1 0.12 4.2E-06 48.3 3.4 23 241-263 11-33 (180)
455 2efe_B Small GTP-binding prote 91.0 0.12 4.1E-06 48.4 3.3 23 241-263 13-35 (181)
456 3t1o_A Gliding protein MGLA; G 91.0 0.12 4.2E-06 49.0 3.4 23 242-264 16-38 (198)
457 3bwd_D RAC-like GTP-binding pr 91.0 0.14 5E-06 47.9 3.8 24 239-262 7-30 (182)
458 3kkq_A RAS-related protein M-R 90.9 0.13 4.3E-06 48.5 3.4 23 241-263 19-41 (183)
459 2fh5_B SR-beta, signal recogni 90.9 0.13 4.4E-06 50.0 3.5 25 239-263 6-30 (214)
460 1mh1_A RAC1; GTP-binding, GTPa 90.9 0.13 4.4E-06 48.3 3.4 22 242-263 7-28 (186)
461 2cxx_A Probable GTP-binding pr 90.9 0.12 4E-06 48.9 3.0 21 242-262 3-23 (190)
462 1fzq_A ADP-ribosylation factor 90.9 0.11 3.9E-06 49.2 2.9 24 239-262 15-38 (181)
463 2bov_A RAla, RAS-related prote 90.9 0.12 4E-06 49.7 3.1 24 240-263 14-37 (206)
464 3k53_A Ferrous iron transport 90.8 0.11 3.6E-06 53.2 2.8 23 241-263 4-26 (271)
465 2iw3_A Elongation factor 3A; a 90.8 0.079 2.7E-06 63.8 2.1 38 238-275 697-734 (986)
466 3ihw_A Centg3; RAS, centaurin, 90.8 0.12 4.1E-06 49.2 3.1 22 242-263 22-43 (184)
467 3j16_B RLI1P; ribosome recycli 90.8 0.11 3.8E-06 59.6 3.2 27 240-266 378-404 (608)
468 1nij_A Hypothetical protein YJ 90.7 0.057 1.9E-06 56.9 0.7 25 240-264 4-28 (318)
469 3t5g_A GTP-binding protein RHE 90.7 0.087 3E-06 49.5 2.0 22 241-262 7-28 (181)
470 2gf9_A RAS-related protein RAB 90.7 0.14 4.6E-06 48.8 3.4 22 242-263 24-45 (189)
471 3bgw_A DNAB-like replicative h 90.7 0.18 6E-06 55.7 4.7 27 238-264 195-221 (444)
472 2iwr_A Centaurin gamma 1; ANK 90.7 0.095 3.3E-06 49.1 2.2 23 241-263 8-30 (178)
473 3g5u_A MCG1178, multidrug resi 90.7 0.13 4.4E-06 64.4 4.0 39 238-276 1057-1095(1284)
474 1w1w_A Structural maintenance 90.7 0.16 5.6E-06 55.6 4.4 29 239-267 25-53 (430)
475 4i1u_A Dephospho-COA kinase; s 90.6 0.16 5.4E-06 50.2 3.8 30 242-272 11-40 (210)
476 3c5c_A RAS-like protein 12; GD 90.6 0.13 4.4E-06 49.1 3.1 22 242-263 23-44 (187)
477 3lxx_A GTPase IMAP family memb 90.6 0.11 3.7E-06 51.9 2.6 25 239-263 28-52 (239)
478 3tkl_A RAS-related protein RAB 90.5 0.14 4.9E-06 48.6 3.4 23 241-263 17-39 (196)
479 3bor_A Human initiation factor 90.5 0.38 1.3E-05 47.8 6.6 17 241-257 68-84 (237)
480 4bas_A ADP-ribosylation factor 90.5 0.11 3.7E-06 49.6 2.4 23 240-262 17-39 (199)
481 1moz_A ARL1, ADP-ribosylation 90.4 0.093 3.2E-06 49.4 1.9 24 238-261 16-39 (183)
482 2atv_A RERG, RAS-like estrogen 90.4 0.15 5.1E-06 48.9 3.4 24 240-263 28-51 (196)
483 2gf0_A GTP-binding protein DI- 90.4 0.15 5.1E-06 48.6 3.4 25 239-263 7-31 (199)
484 1x3s_A RAS-related protein RAB 90.4 0.15 5.2E-06 48.3 3.4 23 241-263 16-38 (195)
485 2qnr_A Septin-2, protein NEDD5 90.3 0.11 3.9E-06 54.1 2.6 22 242-263 20-41 (301)
486 3qks_A DNA double-strand break 90.3 0.16 5.3E-06 49.7 3.5 26 241-266 24-49 (203)
487 2fg5_A RAB-22B, RAS-related pr 90.3 0.14 4.9E-06 48.9 3.1 23 241-263 24-46 (192)
488 2cjw_A GTP-binding protein GEM 90.3 0.14 4.9E-06 49.1 3.2 22 242-263 8-29 (192)
489 1zd9_A ADP-ribosylation factor 90.3 0.16 5.3E-06 48.4 3.4 22 242-263 24-45 (188)
490 3oes_A GTPase rhebl1; small GT 90.3 0.12 4.1E-06 49.8 2.6 24 240-263 24-47 (201)
491 1f6b_A SAR1; gtpases, N-termin 90.3 0.13 4.6E-06 49.5 2.9 23 240-262 25-47 (198)
492 3dz8_A RAS-related protein RAB 90.3 0.14 4.6E-06 48.9 2.9 23 242-264 25-47 (191)
493 3reg_A RHO-like small GTPase; 90.3 0.16 5.4E-06 48.5 3.4 23 241-263 24-46 (194)
494 1ksh_A ARF-like protein 2; sma 90.3 0.14 4.7E-06 48.4 3.0 24 239-262 17-40 (186)
495 2a5j_A RAS-related protein RAB 90.2 0.16 5.4E-06 48.4 3.4 22 242-263 23-44 (191)
496 1vg8_A RAS-related protein RAB 90.2 0.16 5.3E-06 48.9 3.4 24 241-264 9-32 (207)
497 1z06_A RAS-related protein RAB 90.2 0.16 5.4E-06 48.3 3.4 23 241-263 21-43 (189)
498 2p5s_A RAS and EF-hand domain 90.2 0.16 5.5E-06 48.8 3.4 24 240-263 28-51 (199)
499 2gks_A Bifunctional SAT/APS ki 90.1 0.19 6.6E-06 56.9 4.5 26 240-265 372-397 (546)
500 2wjy_A Regulator of nonsense t 90.1 0.15 5.2E-06 60.5 3.8 24 241-264 372-395 (800)
No 1
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=100.00 E-value=2.5e-87 Score=769.06 Aligned_cols=531 Identities=49% Similarity=0.840 Sum_probs=469.0
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCccchhHHhcHHHHHHhhhccccc
Q 004834 138 EDDLVALERKMQSAGMPSNIWKHVQKELRRLKKMQPQQPGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYG 217 (728)
Q Consensus 138 ~~~~~~~~~~l~~~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~l~~~~~~L~~~i~G 217 (728)
.+++++++++++++++|+++.+.+++++++++.+.+.++++.++++|++|++++||+..+.+ ..++..+++.|+++++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~~~~~~e~~~~~~~l~~~~~lp~~~~~~~-~~~~~~~~~~l~~di~G 85 (543)
T 3m6a_A 7 TGEVQTLTEKIEEAGMPDHVKETALKELNRYEKIPSSSAESSVIRNYIDWLVALPWTDETDD-KLDLKEAGRLLDEEHHG 85 (543)
T ss_dssp CCTTTHHHHHHHSSSCCCHHHHHHHHHHHSSCCCSSSCTTTTHHHHHHHHHHHSCSSCCCCC-CCCTTTGGGTHHHHCSS
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCCCchHhHHHHHHHHHhcCCCCccccc-cccHHHHHHHHHHHhcc
Confidence 45788999999999999999999999999999999999999999999999999999998887 78888899999999999
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchH
Q 004834 218 LVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRL 297 (728)
Q Consensus 218 ~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l 297 (728)
++++++++.+++....+....+++++||+||||||||++|+++|..++.+++.+++++..+.+++.|+.+.|+|+.++.+
T Consensus 86 ~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~ 165 (543)
T 3m6a_A 86 LEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRI 165 (543)
T ss_dssp CHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CH
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHH
Confidence 99999999999888777666788899999999999999999999999999999999998889999999999999999999
Q ss_pred HHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCe
Q 004834 298 IDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRM 377 (728)
Q Consensus 298 ~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~ 377 (728)
.+.+..+...++|+||||||++.++.++++++.|+++||+.++..|.+++.+.++++++++||+|||.++.++|+|++||
T Consensus 166 ~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~ 245 (543)
T 3m6a_A 166 IQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRM 245 (543)
T ss_dssp HHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHE
T ss_pred HHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhc
Confidence 99999888788899999999999988788899999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 004834 378 EVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQEQE 457 (728)
Q Consensus 378 ~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~a~~~~~~~~~~ 457 (728)
++|.|++|+.+++..|++.++.+++.+++++....+.++++++..+++.|+++.|+|+|++.|+++|+.++.++++.
T Consensus 246 ~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~--- 322 (543)
T 3m6a_A 246 EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAE--- 322 (543)
T ss_dssp EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTT---
T ss_pred ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhc---
Confidence 99999999999999999999999999999998888999999999999999999999999999999999988887754
Q ss_pred hcCCCCccccccCCccccccccCCCceeEeeccCCCcccccccccccCCceeechhhhhhhcCCCccCchHHHhhhcCCc
Q 004834 458 QALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRITSPLVVDEAMLEKVLGPPRFDDREAAERVAAPG 537 (728)
Q Consensus 458 ~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~It~~~L~~~Lg~~~~~~~~~~~~~~~~G 537 (728)
. ...+.||.+++++++|++.|.. +...+.+.+|
T Consensus 323 ~----------------------------------------------~~~~~It~~~l~~~Lg~~~~~~-e~~~~~~~~g 355 (543)
T 3m6a_A 323 E----------------------------------------------RKRITVTEKNLQDFIGKRIFRY-GQAETEDQVG 355 (543)
T ss_dssp C----------------------------------------------CSCCEECTTTTHHHHCSCCSCC-STTTCCCBSS
T ss_pred C----------------------------------------------CcceecCHHHHHHHhCCcccCc-hhhhcccccc
Confidence 1 1246799999999999999998 6655677899
Q ss_pred eeEeeEEeecCceeEEEEEEEecCCceEEEeeccchHHHHHHHHHHHHHHHHhhhccchhcccCCCCCcccEEEEccCCC
Q 004834 538 ISVGLVWTNFGGEVQFVEATAMRGKGELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMNLLQGRDIHIHFPAGA 617 (728)
Q Consensus 538 ~~~gl~~~~~gg~~~~iE~~~~~G~~~~~~tG~~~~~~kES~~~a~~~~~~~~~~l~~~~~~~~~~~~~~di~i~~~~g~ 617 (728)
+++|++|+++||.+++|||.+++|.|++++||++|++||||+++|++|+++++..+|+ ...+|+++|||||+++|+
T Consensus 356 ~v~g~a~~~~~g~~~~ve~~~~~g~~~~~~~G~~~~~~~es~~~a~~~v~~~~~~~g~----~~~~~~~~di~v~~~~g~ 431 (543)
T 3m6a_A 356 VVTGLAYTTVGGDTLSIEVSLSPGKGKLILTGKLGDVMRESAQAAFSYVRSKTEELGI----EPDFHEKYDIHIHVPEGA 431 (543)
T ss_dssp EEEEEEEETTEEEEEEEEEEEESSCSCEEEEESCCHHHHHHHHHHHHHHTSSCGGGSS----CSSCTTTCEEEEEECTTB
T ss_pred ccccccccCCCccceeeEEEeeCCCCceEEecCchHHHHHHHHHHHHHHHHHHHHcCC----CccccCCcceEEEeCCCC
Confidence 9999999999999999999999999999999999999999999999999999988887 345588999999999999
Q ss_pred CCCCCchhHHHHHHHHHHhccCCCCCCCeEEEeeeCCCceeeecCCHHHHHHHHHHcCCCeeeccccCccccccchHhhh
Q 004834 618 VPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVL 697 (728)
Q Consensus 618 ~~kdGpsaglaia~allSa~~~~~v~~~~a~tGEi~L~G~V~~Vggi~~ki~~A~~~G~~~viiP~~n~~d~~~ip~~~~ 697 (728)
+||+|||||||||+||+|+++++|++++++|||||+|+|+|+||||+++|+.+|+++|+++||+|.+|.+++.++|+.+.
T Consensus 432 ~~k~gpsa~l~ia~ai~s~~~~~~~~~~~~~~GEi~L~G~v~~v~g~~~~~~~a~~~g~~~~iiP~~n~~~~~~~~~~~~ 511 (543)
T 3m6a_A 432 VPKDGPAAGITMATALVSALTGRAVSREVGMTGEITLRGRVLPIGGLKEKALGAHRAGLTTIIAPKDNEKDIEDIPESVR 511 (543)
T ss_dssp CGGGGGGGHHHHHHHHHHHHTSCCBCTTCEECCEECTTCBEECCSCHHHHHHHHHHTTCSBEEEEGGGGGGGGGSCHHHH
T ss_pred CCCCCchhHHHHHHHHHHHccCCCCCCCEEEEEEEcCCceEEeeCCHHHHHHHHHHCCCCEEEECHHHHHHHHhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCHHHHHHHHHcCCCCCC
Q 004834 698 ASLEIILAKRMEDVLEQAFEGGCPWR 723 (728)
Q Consensus 698 ~~i~i~~v~~~~e~~~~~~~~~~~~~ 723 (728)
.+++|++|+|+.||++++|...+...
T Consensus 512 ~~~~i~~v~~l~e~~~~~~~~~~~~~ 537 (543)
T 3m6a_A 512 EGLTFILASHLDEVLEHALVGEKKLE 537 (543)
T ss_dssp TSCBCCEESBHHHHHHHHBC------
T ss_pred CCCEEEEeCCHHHHHHHHHhccCccc
Confidence 99999999999999999987665443
No 2
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=100.00 E-value=5.3e-54 Score=499.67 Aligned_cols=351 Identities=23% Similarity=0.341 Sum_probs=274.6
Q ss_pred CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccC---------CCCeeecCCCcEEEEecCCC--CCCChhhhCC
Q 004834 308 NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDH---------YLNVPFDLSKVIFVATANRA--QPIPPPLLDR 376 (728)
Q Consensus 308 ~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~---------~~~~~~d~~~vi~I~TtN~~--~~l~~~Ll~R 376 (728)
++++||||++.+.+.. ++.|+++|+..+....... ....+ .++.+|+|+|.. ..++++|++|
T Consensus 202 ~gvL~LDEi~~l~~~~----q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p---~~~~vI~atn~~~~~~l~~~l~~R 274 (604)
T 3k1j_A 202 KGVLFIDEIATLSLKM----QQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVP---CDFVLVAAGNLDTVDKMHPALRSR 274 (604)
T ss_dssp TSEEEETTGGGSCHHH----HHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEE---CCCEEEEEECHHHHHHSCHHHHHH
T ss_pred CCEEEEechhhCCHHH----HHHHHHHHHcCcEEecccccccccccCCCCccc---eeEEEEEecCHHHHhhcCHHHHHH
Confidence 4599999999997765 8999999986553322110 11122 245799999986 6899999999
Q ss_pred ee----EEEcCCC---CHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHH----HHHHHHHHHH
Q 004834 377 ME----VIELPGY---TPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN----LERNLAALAR 445 (728)
Q Consensus 377 ~~----vI~~~~~---t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~----L~~~I~~l~r 445 (728)
|. .+.|+.. +.+....+++.. . +.....+ ....++++++..+++.|+++.|.|. ..|.+.+++|
T Consensus 275 ~~v~~i~i~l~~~~~~~~~~~~~~l~~~-~-~~~~~~~---~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr 349 (604)
T 3k1j_A 275 IRGYGYEVYMRTTMPDTIENRRKLVQFV-A-QEVKRDG---KIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVR 349 (604)
T ss_dssp HHHHSEEEECCSEEECCHHHHHHHHHHH-H-HHHHHHC---SSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHH
T ss_pred hhccceEeeccccccCCHHHHHHHHHHH-H-HHHhhcc---CcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHH
Confidence 95 3566543 445555555332 2 2222221 1357999999999999998888776 4678888888
Q ss_pred HHHHHHHHHhhhhcCCCCccccccCCccccccccCCCceeEeeccCCCcccccccccccCCceeechhhhhhhcCCCccC
Q 004834 446 AAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRITSPLVVDEAMLEKVLGPPRFD 525 (728)
Q Consensus 446 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~It~~~L~~~Lg~~~~~ 525 (728)
.|...+... .. ..++.+|+..++. ....++.+.++.|+|.+++.
T Consensus 350 ~A~~~A~~~--~~--------------------------------~~I~~edv~~A~~--~~~~i~~~~~e~~l~~~~~~ 393 (604)
T 3k1j_A 350 AAGDIAVKK--GK--------------------------------KYVEREDVIEAVK--MAKPLEKQLADWYIERKKEY 393 (604)
T ss_dssp HHHHHHHHT--TC--------------------------------SSBCHHHHHHHHH--HTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc--Cc--------------------------------ccccHHHHHHHHH--hhhhhHHHHHHHHhcccccc
Confidence 764433221 00 0112223333321 12457788999999998766
Q ss_pred chHHHhhhcCCceeEeeEEeecC-ceeEEEEEEEecCC----ceEEEeeccchHHHHHHHHHHHHHHHHhhhccchhccc
Q 004834 526 DREAAERVAAPGISVGLVWTNFG-GEVQFVEATAMRGK----GELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDG 600 (728)
Q Consensus 526 ~~~~~~~~~~~G~~~gl~~~~~g-g~~~~iE~~~~~G~----~~~~~tG~~~~~~kES~~~a~~~~~~~~~~l~~~~~~~ 600 (728)
. ....+...+|+++|++|++.+ |.+++||+.+++|. |++++||++|++||||++++.+++++++ +..
T Consensus 394 ~-~i~~~~~~~g~v~gla~~~~~~g~~~~ie~~~~~~~~~~~g~~~~~g~~~~~~~es~~~~~~~l~~~~---~~~---- 465 (604)
T 3k1j_A 394 Q-VIKTEGSEIGRVNGLAVIGEQSGIVLPIEAVVAPAASKEEGKIIVTGKLGEIAKEAVQNVSAIIKRYK---GED---- 465 (604)
T ss_dssp C-CCCCSSEETTEEEEEEEETTTEEEEEEEEEEEEECSSSSBCCEEEESCBCHHHHHHHHHHHHHHHHHH---CGG----
T ss_pred c-hhhccCcccEEEEEEEEECCCccEEEEEEEEEEeCCCCCCCEEEEecChHHHHHHHHHHHHHHHHhhh---ccC----
Confidence 5 444456788999999999998 99999999998843 5799999999999999999999998753 322
Q ss_pred CCCCCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCeEEEeeeCCCceeeecCCHHHHHHHHHHcCCCeee
Q 004834 601 MNLLQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVI 680 (728)
Q Consensus 601 ~~~~~~~di~i~~~~g~~~kdGpsaglaia~allSa~~~~~v~~~~a~tGEi~L~G~V~~Vggi~~ki~~A~~~G~~~vi 680 (728)
|+++|||||+++|+++|||||||+|+|+||+|+++++|+++++||||||+|+|+|+||||+++|+.+|++.|+++||
T Consensus 466 ---~~~~~i~i~~~~~~~~~~gpsa~l~~~~ai~sa~~~~~~~~~~~~~Gei~l~G~v~~v~g~~~k~~~a~~~G~~~~i 542 (604)
T 3k1j_A 466 ---ISRYDIHVQFLQTYEGVEGDAASISVATAVISALEGIPIRQDVAMTGSLSVRGEVLPIGGATPAIEAAIEAGIKMVI 542 (604)
T ss_dssp ---GGGEEEEEEETTCTTCBCSSTTHHHHHHHHHHHHHTCCEETTEEECCEECTTSBEECCSCHHHHHHHHHHHTCCEEE
T ss_pred ---CCCCcEEEEEcCCcccCCCccchHHHHHHHHHHcCCCCCCCCeEEEEEecCCceEEeeCCHHHHHHHHHHcCCCEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccchHhhhCCcEEEEeCCHHHHHHHHHcC
Q 004834 681 LPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEG 718 (728)
Q Consensus 681 iP~~n~~d~~~ip~~~~~~i~i~~v~~~~e~~~~~~~~ 718 (728)
||++|.+++. +|+++..+++|++|+|++||++++|..
T Consensus 543 iP~~n~~~~~-~~~~~~~~~~i~~v~~~~e~~~~~~~~ 579 (604)
T 3k1j_A 543 IPKSNEKDVF-LSKDKAEKIQIFPVETIDEVLEIALEE 579 (604)
T ss_dssp EEGGGGGGCC-CCHHHHTTCEEEEESBHHHHHHHHBCC
T ss_pred ECHHHhhhhc-ccccccCCcEEEEeCCHHHHHHHHHhc
Confidence 9999999997 888888999999999999999999863
No 3
>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET: MSE; 1.75A {Escherichia coli} SCOP: d.14.1.10 PDB: 1rr9_A*
Probab=100.00 E-value=1.1e-42 Score=345.75 Aligned_cols=186 Identities=51% Similarity=0.824 Sum_probs=173.5
Q ss_pred HhhhcCCceeEeeEEeecCceeEEEEEEEecCCceEEEeeccchHHHHHHHHHHHHHHHHhhhccchhcccCCCCCcccE
Q 004834 530 AERVAAPGISVGLVWTNFGGEVQFVEATAMRGKGELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMNLLQGRDI 609 (728)
Q Consensus 530 ~~~~~~~G~~~gl~~~~~gg~~~~iE~~~~~G~~~~~~tG~~~~~~kES~~~a~~~~~~~~~~l~~~~~~~~~~~~~~di 609 (728)
..+..++|+++|++|+++||.+++||+.+++|+|.+++||+++++||||+++|++|+++++.++++. ..+|+++||
T Consensus 5 ~~~~~~~G~v~gla~~~~~g~~v~IE~~~~~G~g~~~itG~~~~~~kES~~~a~s~~~~~~~~~g~~----~~~~~~~di 80 (200)
T 1rre_A 5 ADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGIN----PDFYEKRDI 80 (200)
T ss_dssp -----CCEEEEEEEEETTEEEEEEEEEEEEECSSCEEEESSBCHHHHHHHHHHHHHHHHTHHHHTCC----TTTTTSEEE
T ss_pred cccCCCcEEEEEEEEecCCCEEEEEEEEEeCCCceEEEecCchHHHHHHHHHHHHHHHHhHHhcCCC----cccCCcceE
Confidence 4456789999999999999999999999999999999999999999999999999999998888873 346899999
Q ss_pred EEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCeEEEeeeCCCceeeecCCHHHHHHHHHHcCCCeeeccccCcccc
Q 004834 610 HIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDL 689 (728)
Q Consensus 610 ~i~~~~g~~~kdGpsaglaia~allSa~~~~~v~~~~a~tGEi~L~G~V~~Vggi~~ki~~A~~~G~~~viiP~~n~~d~ 689 (728)
|||+++|+.+|+|||+|||||+||+|+++++|++++++|||||+|+|+|+||||+.+|+.+|++.|++++|+|.+|..++
T Consensus 81 ~vnl~~g~~~k~GpsadLaia~AilSa~~~~p~~~~~a~tGEl~L~G~VrpV~Gi~~ki~~A~~~G~~~vivP~~N~~e~ 160 (200)
T 1rre_A 81 HVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDL 160 (200)
T ss_dssp EEECSSTTSCEESSTTHHHHHHHHHHHHHTCCBCTTEEECCEECTTCBEECCSCHHHHHHHHHHTTCCEEEEEGGGGGGG
T ss_pred EEEeCCccccCCCCcchHHHHHHHHHHcCCCCCCCCEEEEEEEcCCceEEeeCCHHHHHHHHHHcCCCEEEechHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHhhhCCcEEEEeCCHHHHHHHHHcCC
Q 004834 690 VEVPAAVLASLEIILAKRMEDVLEQAFEGG 719 (728)
Q Consensus 690 ~~ip~~~~~~i~i~~v~~~~e~~~~~~~~~ 719 (728)
.++|+.+..++++++|+|++|+++++|...
T Consensus 161 ~~~~~~~~~gi~v~~v~~l~ea~~~l~~~~ 190 (200)
T 1rre_A 161 EEIPDNVIADLDIHPVKRIEEVLTLALQNE 190 (200)
T ss_dssp GGSCHHHHHHSEEEEESBHHHHHHHHBSSC
T ss_pred hhhHHhhcCCCEEEEcCCHHHHHHHHhhcc
Confidence 888988888999999999999999998644
No 4
>2x36_A LON protease homolog, mitochondrial; hydrolase, catalytic DYAD, transit peptide; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.7e-42 Score=341.77 Aligned_cols=186 Identities=44% Similarity=0.729 Sum_probs=170.5
Q ss_pred HhhhcCCceeEeeEEeecCceeEEEEEEEe---------cCCceEEEeeccchHHHHHHHHHHHHHHHHhhhccchhccc
Q 004834 530 AERVAAPGISVGLVWTNFGGEVQFVEATAM---------RGKGELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDG 600 (728)
Q Consensus 530 ~~~~~~~G~~~gl~~~~~gg~~~~iE~~~~---------~G~~~~~~tG~~~~~~kES~~~a~~~~~~~~~~l~~~~~~~ 600 (728)
.++.++||+++||+||++||.+++||++++ +|+|.+++||+++++||||+++|++|++++...++. +
T Consensus 4 ~~~~~~~G~v~GLa~t~~gg~~l~iE~~~~~~~~~~~~~~g~g~~~itG~~~~~~kES~~~a~s~~~~~~~~~~~----~ 79 (207)
T 2x36_A 4 MYDVTPPGVVMGLAWTAMGGSTLFVETSLRRPQDKDAKGDKDGSLEVTGQLGEVMKESARIAYTFARAFLMQHAP----A 79 (207)
T ss_dssp CCSSCCTTEEEEEEEBSSSEEEEEEEEEESSCCC--------CEEEEESCCCHHHHHHHHHHHHHHHHHHHHHST----T
T ss_pred ccCCCCCeEEEEeEEEccCCeEEEEEEEEEecccccccCCCCCeEEEEeCchHHHHHHHHHHHHHHHhccccccc----c
Confidence 345678999999999999999999999999 899999999999999999999999999988766653 2
Q ss_pred CCCCCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCeEEEeeeCCCceeeecCCHHHHHHHHHHcCCCeee
Q 004834 601 MNLLQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVI 680 (728)
Q Consensus 601 ~~~~~~~di~i~~~~g~~~kdGpsaglaia~allSa~~~~~v~~~~a~tGEi~L~G~V~~Vggi~~ki~~A~~~G~~~vi 680 (728)
...|+++|||||+++|+.+|+|||+|||||+||+|+++++|++++++|||||+|+|+|+||||+.+|+.+|+++|++++|
T Consensus 80 ~~~~~~~di~vnl~~g~~~K~GpsadLaia~AilSa~~~~p~~~~~a~tGEl~L~G~VrpV~Gi~~ki~~A~~~G~~~vi 159 (207)
T 2x36_A 80 NDYLVTSHIHLHVPEGATPKDGPSAGCTIVTALLSLAMGRPVRQNLAMTGEVSLTGKILPVGGIKEKTIAAKRAGVTCIV 159 (207)
T ss_dssp CCHHHHCEEEEECCSCBCTTTGGGGHHHHHHHHHHHHHTCCCCTTEEECCEECTTSBEECCSCHHHHHHHHHHTTCCEEE
T ss_pred cccCccceEEEEeCCcccCCCCCcchHHHHHHHHHHcCCCCCCCCEEEEEEECCCceEEeecCHHHHHHHHHHcCCCeEE
Confidence 22378999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccchHhhhCCcEEEEeCCHHHHHHHHHcCC
Q 004834 681 LPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGG 719 (728)
Q Consensus 681 iP~~n~~d~~~ip~~~~~~i~i~~v~~~~e~~~~~~~~~ 719 (728)
+|.+|..++..+|++++.+++|++|+|++|+++++|...
T Consensus 160 vP~~N~~e~~~~~~~~~~gi~v~~v~~l~e~~~~l~~~~ 198 (207)
T 2x36_A 160 LPAENKKDFYDLAAFITEGLEVHFVEHYREIFDIAFPDE 198 (207)
T ss_dssp EEGGGHHHHHTSCHHHHTTCEEEEESBHHHHHHHHCTTS
T ss_pred ecchhHHHHhhhhHhhcCCCEEEECCCHHHHHHHHhccc
Confidence 999999999889999999999999999999999988643
No 5
>1xhk_A Putative protease LA homolog; LON protease, ATP dependent, catalytic DYAD, hydrolase; HET: MES; 1.90A {Methanocaldococcus jannaschii} SCOP: d.14.1.10
Probab=100.00 E-value=1.7e-37 Score=306.32 Aligned_cols=176 Identities=32% Similarity=0.530 Sum_probs=158.3
Q ss_pred hcCCceeEeeEEeecC--ceeEEEEEEEec----CCceEEEeeccchHHHHHHHHHHHHHHHHhhhccchhcccCCC-CC
Q 004834 533 VAAPGISVGLVWTNFG--GEVQFVEATAMR----GKGELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMNL-LQ 605 (728)
Q Consensus 533 ~~~~G~~~gl~~~~~g--g~~~~iE~~~~~----G~~~~~~tG~~~~~~kES~~~a~~~~~~~~~~l~~~~~~~~~~-~~ 605 (728)
.+++|+++|++|++++ |.+++||+.+++ |+|.+.+|| ++||||++++++|+++++...+.... ..++ |+
T Consensus 3 ~~~~g~v~gla~~g~~~~g~~v~IEa~v~~~~~~g~g~~~~tG---~~~res~~~~~a~l~~~~~~~~~~~~-~~g~~~~ 78 (187)
T 1xhk_A 3 EPKVGVIYGLAVLGAGGIGDVTKIIVQILESKNPGTHLLNISG---DIAKHSITLASALSKKLVAEKKLPLP-KKDIDLN 78 (187)
T ss_dssp CCBTTEEEEEECCSSSSCCEEEEEEEEEEECSSCEEEEESSCH---HHHHHHHHHHHHHHHHHHHTTSSCCC-SSCCCST
T ss_pred CCceEEEEEEEEECCCCceEEEEEEEEEEcCCCCCCCceEEec---HHHHHHHHHHHHHHhhhhhccccccc-ccCCCCC
Confidence 4678999999999996 899999999988 457777787 99999999999999998776543211 2344 89
Q ss_pred cccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCeEEEeeeCCCceeeecCCHHHHHHHHHHcCCCeeeccccC
Q 004834 606 GRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERN 685 (728)
Q Consensus 606 ~~di~i~~~~g~~~kdGpsaglaia~allSa~~~~~v~~~~a~tGEi~L~G~V~~Vggi~~ki~~A~~~G~~~viiP~~n 685 (728)
++|||||+++|++||||||||||||+||+|++.++|++++++|||||+|+|+|+||||+++|+.+|+++|++++|||++|
T Consensus 79 ~~di~vn~~~g~~~k~GpsadLaia~AilSa~~~~p~~~~~a~tGEl~L~G~V~pV~Gi~~ki~~A~~~G~~~viiP~~N 158 (187)
T 1xhk_A 79 NKEIYIQFSQSYSKIDGDSATAAVCLAIISALLDIPLKQDFAITGSLDLSGNVLAIGGVNEKIEAAKRYGFKRVIIPEAN 158 (187)
T ss_dssp TEEEEEEESSCCCTTTGGGGHHHHHHHHHHHHHTCCBCSSEEECCEECTTCBEECCSCHHHHHHHHHHTTCSEEEEEGGG
T ss_pred CeeEEEEECCCCcCCcCchHHHHHHHHHHHHccCCCCCCCEEEEEEECCCceEEeeCCHHHHHHHHHHcCCCEEEeccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHhhhCCcEEEEeCCHHHHHHHHHc
Q 004834 686 LKDLVEVPAAVLASLEIILAKRMEDVLEQAFE 717 (728)
Q Consensus 686 ~~d~~~ip~~~~~~i~i~~v~~~~e~~~~~~~ 717 (728)
.+|+.. ..+++|++|+|++||++++|.
T Consensus 159 ~~e~~~-----~~~i~v~~v~~l~ea~~~l~~ 185 (187)
T 1xhk_A 159 MIDVIE-----TEGIEIIPVKTLDEIVPLVFD 185 (187)
T ss_dssp GGGCCC-----CCSSEEEEESBHHHHHHHHBC
T ss_pred hhhhcc-----cCCcEEEEcCCHHHHHHHHhc
Confidence 998763 349999999999999999864
No 6
>1z0w_A Putative protease LA homolog type; ATP-dependent protease, catalytic Ser-Lys DYAD, B-type LON, hydrolase; 1.20A {Archaeoglobus fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A 1z0g_A 1z0t_A 1z0v_A
Probab=100.00 E-value=2.1e-37 Score=309.36 Aligned_cols=176 Identities=31% Similarity=0.452 Sum_probs=160.2
Q ss_pred hhcCCceeEeeEEeecC-ceeEEEEEEEec--CC--ceEEEeeccchHHHHHHHHHHHHHHHHhhhccchhcccCCCCCc
Q 004834 532 RVAAPGISVGLVWTNFG-GEVQFVEATAMR--GK--GELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMNLLQG 606 (728)
Q Consensus 532 ~~~~~G~~~gl~~~~~g-g~~~~iE~~~~~--G~--~~~~~tG~~~~~~kES~~~a~~~~~~~~~~l~~~~~~~~~~~~~ 606 (728)
+.+++|+++|++|++.+ |.+++||+.+.+ |. |++++||+++++|+||+++++++++.+. ++. |++
T Consensus 8 ~~~~vg~v~gla~~g~~~g~~l~Iev~v~~s~g~~~p~~~~~G~~~~~~~es~~~v~a~l~~~~---g~~-------~~~ 77 (207)
T 1z0w_A 8 EGYEVGRVNGLAVIGESAGIVLPIIAEVTPSMSKSEGRVIATGRLQEIAREAVMNVSAIIKKYT---GRD-------ISN 77 (207)
T ss_dssp SSEETTEEEEEEEETTTEEEEEEEEEEEEECC---CCCEECCSTTHHHHHHHHHHHHHHHHHHH---CCC-------GGG
T ss_pred CCCceEEEEEEEEECCCCcEEEEEEEEEEecCCCCCCeEEEeCCchhhhHHHHHHHHHHHHHhc---CCC-------CCC
Confidence 35678999999999995 998888777655 66 8999999999999999999999996543 321 789
Q ss_pred ccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCeEEEeeeCCCceeeecCCHHHHHHHHHHcCCCeeeccccCc
Q 004834 607 RDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNL 686 (728)
Q Consensus 607 ~di~i~~~~g~~~kdGpsaglaia~allSa~~~~~v~~~~a~tGEi~L~G~V~~Vggi~~ki~~A~~~G~~~viiP~~n~ 686 (728)
+|||||+++|+++|+|||+|||+|+|++|++.++|++++++|||||+|+|+|+||||+.+|+.+|++.|++++|+|.+|.
T Consensus 78 ~di~vnl~~g~~~k~GpsadLaia~AilSa~~~~p~~~~~a~tGEl~L~G~VrpV~Gi~~ki~~A~~~G~~~viiP~~N~ 157 (207)
T 1z0w_A 78 MDVHIQFVGTYEGVEGDSASISIATAVISAIEGIPVDQSVAMTGSLSVKGEVLPVGGVTQKIEAAIQAGLKKVIIPKDNI 157 (207)
T ss_dssp EEEEEEESSCCTTEECCTTBHHHHHHHHHHHHTCCEETTEEECCEECTTSBEECCSCHHHHHHHHHHTTCSEEEEEGGGG
T ss_pred ceEEEEEecccccccCCcchHHHHHHHHHHcCCCCCCCCEEEEEEECCCceEEeeCCHHHHHHHHHHcCCCEEEechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHhhhCCcEEEEeCCHHHHHHHHHcC
Q 004834 687 KDLVEVPAAVLASLEIILAKRMEDVLEQAFEG 718 (728)
Q Consensus 687 ~d~~~ip~~~~~~i~i~~v~~~~e~~~~~~~~ 718 (728)
.++. +|+++..++++++|+|++||++++|.+
T Consensus 158 ~e~~-~~~~~~~~i~v~~v~~l~ea~~~l~~~ 188 (207)
T 1z0w_A 158 DDVL-LDAEHEGKIEVIPVSRINEVLEHVLED 188 (207)
T ss_dssp GGCC-CCTTTTTSSEEEEESBHHHHHHHHBCC
T ss_pred hhhc-cchhccCCcEEEEcCCHHHHHHHHhhc
Confidence 9987 888888899999999999999998764
No 7
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.96 E-value=4.4e-29 Score=301.17 Aligned_cols=393 Identities=20% Similarity=0.286 Sum_probs=266.1
Q ss_pred CCHHHHHHhhhccCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH-----hhhc-hHHHHHHHHHHHHHHHHHhCC
Q 004834 65 ISFEEQLVMLDSVDLKVRLSK-----ATELVDRHLQSIRVAEKITQKVE-----GQLS-KSQKEFLLRQQMRAIKEELGD 133 (728)
Q Consensus 65 ~~~~~~~~lLd~~~~~~r~~~-----~~~~l~~~~~~~~~e~~~~~~~~-----~~~~-~~~r~~~l~eql~~i~~el~~ 133 (728)
.-|+++++++|+++++.|+.. .++.+++++.+++.+.....+.+ +++. -.+....++++++.+...|..
T Consensus 376 ~lp~kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (854)
T 1qvr_A 376 RLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWER 455 (854)
T ss_dssp CTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 349999999999999999974 78889999998888876443321 1111 122334555666666666543
Q ss_pred CCCCHHHHHHHHHHHHH-------cCC-C---------HHHHHHHHHHHHHHHhcCCC---C---CCCchhHHHHHHHHc
Q 004834 134 NDDDEDDLVALERKMQS-------AGM-P---------SNIWKHVQKELRRLKKMQPQ---Q---PGYTSSRVYLELIAD 190 (728)
Q Consensus 134 ~~~~~~~~~~~~~~l~~-------~~~-~---------~~~~~~~~~el~~l~~~~~~---~---~~~~~~~~~~~~~~~ 190 (728)
....-.++..++..+.. +.- . ...+..+++++..++..... . .....+...+..+++
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~v~~~~~ 535 (854)
T 1qvr_A 456 EREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTG 535 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccccccCCcCHHHHHHHHHHHhC
Confidence 22212223333333321 110 0 01233344455554332111 1 122245667777888
Q ss_pred CCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccC---CCCCCCEEEEEcCCCCChhHHHHHHHHHh---
Q 004834 191 LPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLK---PDARGPVLCFVGPPGVGKTSLASSIASAL--- 264 (728)
Q Consensus 191 iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~---~~~~~~~lLL~GPpGtGKT~LakalA~~l--- 264 (728)
+|+......+...+..+...+..+++|++.+++.+...+...... +..+..+++|+||||||||++|+++|+.+
T Consensus 536 ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~ 615 (854)
T 1qvr_A 536 IPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 615 (854)
T ss_dssp CHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS
T ss_pred CChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 888776655455566677788889999999999999988765431 22233489999999999999999999999
Q ss_pred CCCeEEEecCCcc---chhhhccCccccccCCc-chHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccc
Q 004834 265 GRKFIRISLGGVK---DEADIRGHRRTYIGSMP-GRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQN 340 (728)
Q Consensus 265 ~~~~~~i~~~~~~---~~s~l~g~~~~yvG~~~-g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~ 340 (728)
+.+++.++|+.+. ..+.+.|.+++|+|+.. |.++.+++..+ ..|+|||||++++++. ++.|+++|+.+.
T Consensus 616 ~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~--~~vl~lDEi~~l~~~~----~~~Ll~~l~~~~- 688 (854)
T 1qvr_A 616 EEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRP--YSVILFDEIEKAHPDV----FNILLQILDDGR- 688 (854)
T ss_dssp GGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCS--SEEEEESSGGGSCHHH----HHHHHHHHTTTE-
T ss_pred CCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCC--CeEEEEecccccCHHH----HHHHHHHhccCc-
Confidence 6789999998764 36778899999999987 78888888765 3599999999998877 999999999754
Q ss_pred cccccCCCCeeecCCCcEEEEecCCC--------------------------CCCChhhhCCee-EEEcCCCCHHHHHHH
Q 004834 341 KTFNDHYLNVPFDLSKVIFVATANRA--------------------------QPIPPPLLDRME-VIELPGYTPEEKLRI 393 (728)
Q Consensus 341 ~~~~d~~~~~~~d~~~vi~I~TtN~~--------------------------~~l~~~Ll~R~~-vI~~~~~t~ee~~~I 393 (728)
+.+. .++++|+++++||+|||.+ ..|.|+|++||+ ++.|.+|+.+++..|
T Consensus 689 --~~~~-~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i 765 (854)
T 1qvr_A 689 --LTDS-HGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQI 765 (854)
T ss_dssp --ECCS-SSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHH
T ss_pred --eECC-CCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHH
Confidence 4443 4789999999999999972 368999999996 788999999999999
Q ss_pred HHHhhchHHHhhcCCCccccccCHHHHHHHHH-HcccccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCc
Q 004834 394 AMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSP 472 (728)
Q Consensus 394 l~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~-~~~~~~G~R~L~~~I~~l~r~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (728)
+..++..- ....+-....+.++++++++|++ .|.+.+|+|.|++.|++.+..+ ++..
T Consensus 766 ~~~~l~~~-~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~---------------------~~~~ 823 (854)
T 1qvr_A 766 VEIQLSYL-RARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP---------------------LAQK 823 (854)
T ss_dssp HHHHHHHH-HHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHH---------------------HHHH
T ss_pred HHHHHHHH-HHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHH---------------------HHHH
Confidence 99887431 11111112247899999999997 5666899999999998877432 2334
Q ss_pred cccccccCCCceeEeec
Q 004834 473 LLDNRLADGAEVEMEVI 489 (728)
Q Consensus 473 ~l~~~~~~~~~v~~~~~ 489 (728)
++.|...+|++|.|+++
T Consensus 824 i~~~~~~~~~~~~~~~~ 840 (854)
T 1qvr_A 824 ILAGEVKEGDRVQVDVG 840 (854)
T ss_dssp HHHTSSCSSCEEEEECC
T ss_pred HHhCcCCCCCEEEEEEE
Confidence 55667778888888765
No 8
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.96 E-value=5.9e-28 Score=288.12 Aligned_cols=352 Identities=20% Similarity=0.309 Sum_probs=246.3
Q ss_pred CCHHHHHHhhhccCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCCCCCHH
Q 004834 65 ISFEEQLVMLDSVDLKVRLSK-----ATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDED 139 (728)
Q Consensus 65 ~~~~~~~~lLd~~~~~~r~~~-----~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~r~~~l~eql~~i~~el~~~~~~~~ 139 (728)
..|++++++++++|++.++.. .++.++++++.++.+.+..... ...++...++.++..+++++.....
T Consensus 369 ~~p~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~l~~~~~--- 441 (758)
T 3pxi_A 369 FLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQS----QEFEKAASLRDTEQRLREQVEDTKK--- 441 (758)
T ss_dssp CTTHHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHH----CCSHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred cCCcHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhC----cCHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 349999999999999999885 5677888888877776532221 2234445555555555554421100
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCccchhHHhcHHHHHHhhhccccchH
Q 004834 140 DLVALERKMQSAGMPSNIWKHVQKELRRLKKMQPQQPGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLV 219 (728)
Q Consensus 140 ~~~~~~~~l~~~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~ 219 (728)
.. .+.............+..++..++++|+......+...+..+...+...++|++
T Consensus 442 -------~~-----------------~~~~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~ 497 (758)
T 3pxi_A 442 -------SW-----------------KEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQD 497 (758)
T ss_dssp -------GG-----------------GHHHHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCH
T ss_pred -------HH-----------------HHhhcccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChH
Confidence 00 000111222234456777888899999999888877777888899999999999
Q ss_pred HHHHHHHHHHHhhccC---CCCCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccchhhhccCccccccCC
Q 004834 220 RVKQRIIEYLAVRKLK---PDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSM 293 (728)
Q Consensus 220 ~vk~~i~~~l~~~~~~---~~~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~~s~l~g~~~~yvG~~ 293 (728)
.+++.+...+...... +..+..++||+||||||||++|+++|+.+ +.++++++|+.+.+.. ...
T Consensus 498 ~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~---------~~~- 567 (758)
T 3pxi_A 498 EAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKH---------STS- 567 (758)
T ss_dssp HHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSC---------CCC-
T ss_pred HHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccc---------ccc-
Confidence 9999999988765432 12222379999999999999999999998 5789999998865522 121
Q ss_pred cchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCC-----
Q 004834 294 PGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQP----- 368 (728)
Q Consensus 294 ~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~----- 368 (728)
.+.++.+++..+ .+|+|||||++++++. ++.|+++||.++ +.+. .|..+++.+++||+|||.+..
T Consensus 568 ~~~l~~~~~~~~--~~vl~lDEi~~~~~~~----~~~Ll~~le~g~---~~~~-~g~~~~~~~~~iI~ttn~~~~~~~~~ 637 (758)
T 3pxi_A 568 GGQLTEKVRRKP--YSVVLLDAIEKAHPDV----FNILLQVLEDGR---LTDS-KGRTVDFRNTILIMTSNVGASEKDKV 637 (758)
T ss_dssp ---CHHHHHHCS--SSEEEEECGGGSCHHH----HHHHHHHHHHSB---CC------CCBCTTCEEEEEESSSTTCCHHH
T ss_pred cchhhHHHHhCC--CeEEEEeCccccCHHH----HHHHHHHhccCe---EEcC-CCCEeccCCeEEEEeCCCChhhHHHH
Confidence 456677777665 3599999999998877 999999999743 3333 367788999999999997654
Q ss_pred -------CChhhhCCee-EEEcCCCCHHHHHHHHHHhhch--HHHhhcCCCccccccCHHHHHHHHH-HcccccchHHHH
Q 004834 369 -------IPPPLLDRME-VIELPGYTPEEKLRIAMRHLIP--RVLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLE 437 (728)
Q Consensus 369 -------l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~--~~~~~~~~~~~~~~i~d~~l~~l~~-~~~~~~G~R~L~ 437 (728)
|+|+|++||+ +|.|++|+.+++..|++.++.. +.+.+. ...+.++++++++|++ .|.+.+|+|+|+
T Consensus 638 ~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~---~~~~~~~~~a~~~l~~~~~~~~~~~R~L~ 714 (758)
T 3pxi_A 638 MGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQ---DLSIELTDAAKAKVAEEGVDLEYGARPLR 714 (758)
T ss_dssp HHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTT---TCEEEECHHHHHHHHGGGCCTTTTTTTHH
T ss_pred HHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhC---CCeEEECHHHHHHHHHhCCCCCCCChHHH
Confidence 8999999995 8999999999999999988743 222322 2357899999999997 599999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCceeEeeccC
Q 004834 438 RNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPM 491 (728)
Q Consensus 438 ~~I~~l~r~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ 491 (728)
+.|++.+.. ++++.+++|...+|++|.|+++..
T Consensus 715 ~~i~~~v~~---------------------~l~~~~l~~~~~~~~~~~~~~~~~ 747 (758)
T 3pxi_A 715 RAIQKHVED---------------------RLSEELLRGNIHKGQHIVLDVEDG 747 (758)
T ss_dssp HHHHHHTHH---------------------HHHHHHHTTCSCSSSEEEEEESSS
T ss_pred HHHHHHHHH---------------------HHHHHHHcCCCCCCCEEEEEEECC
Confidence 999987743 344456777888888888887643
No 9
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.96 E-value=8.8e-28 Score=286.78 Aligned_cols=310 Identities=23% Similarity=0.359 Sum_probs=244.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcCC----CCCCCchhHHHHHHHHcCCCCccchhHHhcHHHHHHhhhccccchHHH
Q 004834 146 RKMQSAGMPSNIWKHVQKELRRLKKMQP----QQPGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRV 221 (728)
Q Consensus 146 ~~l~~~~~~~~~~~~~~~el~~l~~~~~----~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~v 221 (728)
.++....+|+++.+.+++.......... .......+..+++.++++||.....++...+..+.+.|...++|++.+
T Consensus 387 ~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~ 466 (758)
T 1r6b_X 387 KYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKA 466 (758)
T ss_dssp HHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHH
T ss_pred hhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHH
Confidence 3444556788888888766655443211 112234567788889999999887776777888899999999999999
Q ss_pred HHHHHHHHHhhccC---CCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc---cchhhhccCccccccCCc-
Q 004834 222 KQRIIEYLAVRKLK---PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV---KDEADIRGHRRTYIGSMP- 294 (728)
Q Consensus 222 k~~i~~~l~~~~~~---~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~---~~~s~l~g~~~~yvG~~~- 294 (728)
++.+...+...... +..+..++||+||||||||++|+++|+.++.++++++|+++ +..+.+.|++++|+|+..
T Consensus 467 ~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~ 546 (758)
T 1r6b_X 467 IEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG 546 (758)
T ss_dssp HHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHT
T ss_pred HHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCcccc
Confidence 99999887654321 22333479999999999999999999999999999999876 457889999999999866
Q ss_pred chHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC-------
Q 004834 295 GRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ------- 367 (728)
Q Consensus 295 g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~------- 367 (728)
+.+...++.++ .+|+|||||++++++. ++.|+++||.+ .+.+.. ++.+|+++++||+|||.+.
T Consensus 547 ~~l~~~~~~~~--~~vl~lDEi~~~~~~~----~~~Ll~~le~~---~~~~~~-g~~~~~~~~~iI~tsN~~~~~~~~~~ 616 (758)
T 1r6b_X 547 GLLTDAVIKHP--HAVLLLDEIEKAHPDV----FNILLQVMDNG---TLTDNN-GRKADFRNVVLVMTTNAGVRETERKS 616 (758)
T ss_dssp THHHHHHHHCS--SEEEEEETGGGSCHHH----HHHHHHHHHHS---EEEETT-TEEEECTTEEEEEEECSSCC------
T ss_pred chHHHHHHhCC--CcEEEEeCccccCHHH----HHHHHHHhcCc---EEEcCC-CCEEecCCeEEEEecCcchhhhhhcc
Confidence 45677887765 4699999999998876 99999999964 344443 8899999999999999864
Q ss_pred ------------------CCChhhhCCee-EEEcCCCCHHHHHHHHHHhhch--HHHhhcCCCccccccCHHHHHHHHH-
Q 004834 368 ------------------PIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIP--RVLDQHGLGSEFLQIPEAMVKLVIQ- 425 (728)
Q Consensus 368 ------------------~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~--~~~~~~~~~~~~~~i~d~~l~~l~~- 425 (728)
.|+|+|++||+ +|.|++|+.+++..|++.++.. ..+...+ ..+.+++++++++++
T Consensus 617 ~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~---~~~~~~~~a~~~l~~~ 693 (758)
T 1r6b_X 617 IGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKG---VSLEVSQEARNWLAEK 693 (758)
T ss_dssp -----------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTT---EEEEECHHHHHHHHHH
T ss_pred cCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCC---cEEEeCHHHHHHHHHh
Confidence 68999999995 8999999999999999998752 2233332 247899999999997
Q ss_pred HcccccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCceeEeec
Q 004834 426 RYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVI 489 (728)
Q Consensus 426 ~~~~~~G~R~L~~~I~~l~r~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~ 489 (728)
.|.+..|+|.|++.|++.+.. +++..+++|....|++|.|+++
T Consensus 694 ~~~~~~g~R~l~~~i~~~~~~---------------------~l~~~~l~~~~~~~~~~~~~~~ 736 (758)
T 1r6b_X 694 GYDRAMGARPMARVIQDNLKK---------------------PLANELLFGSLVDGGQVTVALD 736 (758)
T ss_dssp HCBTTTBTTTHHHHHHHHHTH---------------------HHHHHHHHSTTTTCEEEEEEEE
T ss_pred CCCcCCCchHHHHHHHHHHHH---------------------HHHHHHHcCcCCCCCEEEEEEe
Confidence 788899999999999998854 3334456677777888887765
No 10
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2e-28 Score=270.12 Aligned_cols=230 Identities=25% Similarity=0.326 Sum_probs=174.8
Q ss_pred HHHcCCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccC-------CCCCCCEEEEEcCCCCChhHHHHH
Q 004834 187 LIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLK-------PDARGPVLCFVGPPGVGKTSLASS 259 (728)
Q Consensus 187 ~~~~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~-------~~~~~~~lLL~GPpGtGKT~Laka 259 (728)
++.-+||.....-..+.+.+..++...+|+|++++|+.|.+.+..+..+ +-.++.++||+||||||||++|++
T Consensus 146 ~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakA 225 (428)
T 4b4t_K 146 LVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKA 225 (428)
T ss_dssp EEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHH
T ss_pred HHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHH
Confidence 3445676544332233333445566779999999999999988765433 235667999999999999999999
Q ss_pred HHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCC-----CC-----HH
Q 004834 260 IASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVR-----GD-----PA 328 (728)
Q Consensus 260 lA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~-----~~-----~~ 328 (728)
+|+.++.+|+.++++...+ .|+|..+..+.+.|..+....| |+||||+|.+.+.+. ++ ..
T Consensus 226 iA~~~~~~~~~v~~~~l~~---------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l 296 (428)
T 4b4t_K 226 VANSTKAAFIRVNGSEFVH---------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRIL 296 (428)
T ss_dssp HHHHHTCEEEEEEGGGTCC---------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHH
T ss_pred HHHHhCCCeEEEecchhhc---------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHH
Confidence 9999999999999887654 7899999899999888765544 999999999977541 11 14
Q ss_pred HHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhC--Cee-EEEcC-CCCHHHHHHHHHHhhchHHHh
Q 004834 329 SALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELP-GYTPEEKLRIAMRHLIPRVLD 404 (728)
Q Consensus 329 ~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~-~~t~ee~~~Il~~~l~~~~~~ 404 (728)
+.||..||.. . ...+++||+|||+++.+||+|++ ||+ .|+|| .|+.++|..|++.++.+
T Consensus 297 ~~lL~~ldg~-----~--------~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~---- 359 (428)
T 4b4t_K 297 IELLTQMDGF-----D--------QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK---- 359 (428)
T ss_dssp HHHHHHHHHS-----C--------SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHS----
T ss_pred HHHHHHhhCC-----C--------CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcC----
Confidence 5677777632 1 13568999999999999999998 998 69997 68999999999988531
Q ss_pred hcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 405 QHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 405 ~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
..+. ++..++.++..+.+.+| ++|.++|+.|++.++++
T Consensus 360 -~~l~------~~~dl~~lA~~t~G~sg-----adi~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 360 -MSLA------PEADLDSLIIRNDSLSG-----AVIAAIMQEAGLRAVRK 397 (428)
T ss_dssp -SCBC------TTCCHHHHHHHTTTCCH-----HHHHHHHHHHHHHHHHT
T ss_pred -CCCC------cccCHHHHHHHCCCCCH-----HHHHHHHHHHHHHHHHC
Confidence 1111 11226777777777777 89999999999999876
No 11
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.95 E-value=4.2e-27 Score=260.14 Aligned_cols=235 Identities=20% Similarity=0.289 Sum_probs=182.1
Q ss_pred cHHHHHHhhhccccchHHHHHHHHHHHHhhcc--------CCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecC
Q 004834 203 DLKAAKERLDSDHYGLVRVKQRIIEYLAVRKL--------KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLG 274 (728)
Q Consensus 203 ~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~--------~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~ 274 (728)
...++...|+++++||+++|+.+..++..... ....++.++||+||||||||++|+++|+.++.+|+.++++
T Consensus 5 tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~ 84 (444)
T 1g41_A 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84 (444)
T ss_dssp CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecch
Confidence 34567788999999999999999888754311 1113456899999999999999999999999999999875
Q ss_pred CccchhhhccCccccccCC-cch---------------------------------------------------------
Q 004834 275 GVKDEADIRGHRRTYIGSM-PGR--------------------------------------------------------- 296 (728)
Q Consensus 275 ~~~~~s~l~g~~~~yvG~~-~g~--------------------------------------------------------- 296 (728)
...+. +|+|.. +..
T Consensus 85 ~~~~~--------g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~ 156 (444)
T 1g41_A 85 KFTEV--------GYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTR 156 (444)
T ss_dssp GGC------------CCCCTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------
T ss_pred hhccc--------ceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCH
Confidence 43321 111110 000
Q ss_pred --------------------------------------------------------------------------------
Q 004834 297 -------------------------------------------------------------------------------- 296 (728)
Q Consensus 297 -------------------------------------------------------------------------------- 296 (728)
T Consensus 157 ~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~ 236 (444)
T 1g41_A 157 QAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLIN 236 (444)
T ss_dssp ---------------------------------------------------------------------CCGGGSCSSCC
T ss_pred HHHHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccC
Confidence
Q ss_pred ----HHHHHhhcCCCCcEEEEecccccCCC---CCCCH-----HHHHHHhcCcccccccccCCCCeeecCCCcEEEEec-
Q 004834 297 ----LIDGLKRVGVCNPVMLLDEIDKTGSD---VRGDP-----ASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA- 363 (728)
Q Consensus 297 ----l~~~~~~a~~~~~VlllDEidkl~~~---~~~~~-----~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~Tt- 363 (728)
..+++..+ ..++++++|||||++.+ ..+|+ +.+||++||+.++.. +| .++|.++++||||.
T Consensus 237 ~~~~~~~ai~~a-e~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~---~~--~~~d~~~ilfI~~ga 310 (444)
T 1g41_A 237 PEELKQKAIDAV-EQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST---KH--GMVKTDHILFIASGA 310 (444)
T ss_dssp HHHHHHHHHHHH-HHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEE---TT--EEEECTTCEEEEEEC
T ss_pred HHHHHHHHHHHh-ccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccc---cc--ceecCCcEEEEeccc
Confidence 00111111 12569999999999876 34554 459999999987764 45 68999999999997
Q ss_pred ----CCCCCCChhhhCCeeE-EEcCCCCHHHHHHHH---HHhhchHHHhhcCCCccccccCHHHHHHHHHH------ccc
Q 004834 364 ----NRAQPIPPPLLDRMEV-IELPGYTPEEKLRIA---MRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQR------YTR 429 (728)
Q Consensus 364 ----N~~~~l~~~Ll~R~~v-I~~~~~t~ee~~~Il---~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~------~~~ 429 (728)
|..+ +.|+|++||++ |.|++|+.+++.+|+ +.++.+++.+.++.....+.++++++.+|++. |++
T Consensus 311 f~~~~~~d-lipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~ 389 (444)
T 1g41_A 311 FQVARPSD-LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTE 389 (444)
T ss_dssp CSSCCGGG-SCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSC
T ss_pred cccCChhh-cchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCc
Confidence 6555 55899999985 999999999999999 68888888888888888899999999999984 668
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH
Q 004834 430 EAGVRNLERNLAALARAAAVKVA 452 (728)
Q Consensus 430 ~~G~R~L~~~I~~l~r~a~~~~~ 452 (728)
+.|+|.|++.|+++|+++++++.
T Consensus 390 ~~GaR~L~~~ie~~~~~~~~~~~ 412 (444)
T 1g41_A 390 NIGARRLHTVMERLMDKISFSAS 412 (444)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHGG
T ss_pred cCCchHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999887754
No 12
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.8e-27 Score=254.38 Aligned_cols=209 Identities=24% Similarity=0.326 Sum_probs=166.0
Q ss_pred HHhhhccccchHHHHHHHHHHHHhhccCC-------CCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchh
Q 004834 208 KERLDSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA 280 (728)
Q Consensus 208 ~~~L~~~i~G~~~vk~~i~~~l~~~~~~~-------~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s 280 (728)
+++-..++.|++++++.+.+.+..+..+| -.++.++||+||||||||++|+++|+.++.+|+.++.+...+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s-- 220 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ-- 220 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC--
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhc--
Confidence 34456789999999999999988754432 255678999999999999999999999999999999887654
Q ss_pred hhccCccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCCC-----C-----HHHHHHHhcCcccccccccCCCC
Q 004834 281 DIRGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRG-----D-----PASALLEVLDPEQNKTFNDHYLN 349 (728)
Q Consensus 281 ~l~g~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~~-----~-----~~~~Ll~~Ld~~~~~~~~d~~~~ 349 (728)
.|+|..+..+.+.|..+....| ||||||||.+.+.+.. + ..+.||..||.. .
T Consensus 221 -------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~-----~----- 283 (405)
T 4b4t_J 221 -------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF-----E----- 283 (405)
T ss_dssp -------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT-----T-----
T ss_pred -------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc-----C-----
Confidence 7999999999999988765544 9999999999876521 1 134566666531 1
Q ss_pred eeecCCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHH
Q 004834 350 VPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQR 426 (728)
Q Consensus 350 ~~~d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~ 426 (728)
...++++|+|||+++.+||+|++ ||+ .|+|+.|+.++|.+|++.++.+ ..+. ++..+..+++.
T Consensus 284 ---~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-----~~l~------~dvdl~~lA~~ 349 (405)
T 4b4t_J 284 ---TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK-----MNLT------RGINLRKVAEK 349 (405)
T ss_dssp ---CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT-----SBCC------SSCCHHHHHHH
T ss_pred ---CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC-----CCCC------ccCCHHHHHHH
Confidence 13568999999999999999998 998 7999999999999999988532 1111 11126778887
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 427 YTREAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 427 ~~~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
+.+.+| ++|..+|+.|++.++++
T Consensus 350 t~G~SG-----ADi~~l~~eA~~~Air~ 372 (405)
T 4b4t_J 350 MNGCSG-----ADVKGVCTEAGMYALRE 372 (405)
T ss_dssp CCSCCH-----HHHHHHHHHHHHHHHHT
T ss_pred CCCCCH-----HHHHHHHHHHHHHHHHc
Confidence 777788 89999999999998876
No 13
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.7e-26 Score=249.15 Aligned_cols=208 Identities=24% Similarity=0.313 Sum_probs=163.4
Q ss_pred HhhhccccchHHHHHHHHHHHHhhccCC-------CCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhh
Q 004834 209 ERLDSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEAD 281 (728)
Q Consensus 209 ~~L~~~i~G~~~vk~~i~~~l~~~~~~~-------~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~ 281 (728)
.+-..++.|++++++.|.+.+..+..++ -.++.++||+||||||||++|+++|..++.+|+.++.+.+.+
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s--- 254 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ--- 254 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC---
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh---
Confidence 3445689999999999999988755433 256679999999999999999999999999999999877654
Q ss_pred hccCccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCCC-----C--H---HHHHHHhcCcccccccccCCCCe
Q 004834 282 IRGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRG-----D--P---ASALLEVLDPEQNKTFNDHYLNV 350 (728)
Q Consensus 282 l~g~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~~-----~--~---~~~Ll~~Ld~~~~~~~~d~~~~~ 350 (728)
.|+|..+..+...|..+....| ||||||+|.+.+.+.. + . .+.||..||.. .
T Consensus 255 ------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~-----~------ 317 (437)
T 4b4t_I 255 ------KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF-----D------ 317 (437)
T ss_dssp ------SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC-----C------
T ss_pred ------ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc-----C------
Confidence 7899988888888887765444 9999999999876521 1 1 34455555521 1
Q ss_pred eecCCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHc
Q 004834 351 PFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRY 427 (728)
Q Consensus 351 ~~d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~ 427 (728)
...++++|+|||+++.+||+|++ ||+ .|+|+.|+.++|.+|++.|+.+ ..+. -.+ .++.+++..
T Consensus 318 --~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~-----~~l~---~dv---dl~~LA~~T 384 (437)
T 4b4t_I 318 --DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK-----MNLS---EDV---NLETLVTTK 384 (437)
T ss_dssp --CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT-----SCBC---SCC---CHHHHHHHC
T ss_pred --CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC-----CCCC---CcC---CHHHHHHhC
Confidence 13568999999999999999998 998 7999999999999999988632 1111 112 256777777
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 428 TREAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 428 ~~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
.+.+| ++|+++|+.|++.++++
T Consensus 385 ~GfSG-----ADI~~l~~eA~~~Air~ 406 (437)
T 4b4t_I 385 DDLSG-----ADIQAMCTEAGLLALRE 406 (437)
T ss_dssp CSCCH-----HHHHHHHHHHHHHHHHT
T ss_pred CCCCH-----HHHHHHHHHHHHHHHHc
Confidence 67777 89999999999999876
No 14
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.7e-26 Score=249.62 Aligned_cols=207 Identities=23% Similarity=0.299 Sum_probs=163.2
Q ss_pred hhhccccchHHHHHHHHHHHHhhccCC-------CCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhh
Q 004834 210 RLDSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADI 282 (728)
Q Consensus 210 ~L~~~i~G~~~vk~~i~~~l~~~~~~~-------~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l 282 (728)
.-..++.|++++++.+.+.+..+..++ -.++.++|||||||||||++|+++|+.++.+|+.++.+...+
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~---- 253 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ---- 253 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS----
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh----
Confidence 345689999999999999887654433 255679999999999999999999999999999999877654
Q ss_pred ccCccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCCC-----C-----HHHHHHHhcCcccccccccCCCCee
Q 004834 283 RGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRG-----D-----PASALLEVLDPEQNKTFNDHYLNVP 351 (728)
Q Consensus 283 ~g~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~~-----~-----~~~~Ll~~Ld~~~~~~~~d~~~~~~ 351 (728)
.|+|..+..+...|..+....| ||||||+|.+.+.+.+ + ..+.||..||...
T Consensus 254 -----~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~------------ 316 (434)
T 4b4t_M 254 -----MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS------------ 316 (434)
T ss_dssp -----SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC------------
T ss_pred -----cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC------------
Confidence 7899988888888877654444 9999999999776521 1 1345677776321
Q ss_pred ecCCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcc
Q 004834 352 FDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT 428 (728)
Q Consensus 352 ~d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~ 428 (728)
...++++|+|||+++.+||+|++ ||+ .|+|+.|+.++|.+|++.++.+ ..+. -.++ +..+++.+.
T Consensus 317 -~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-----~~~~---~dvd---l~~lA~~t~ 384 (434)
T 4b4t_M 317 -SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRK-----MTTD---DDIN---WQELARSTD 384 (434)
T ss_dssp -SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHH-----SCBC---SCCC---HHHHHHHCS
T ss_pred -CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcC-----CCCC---CcCC---HHHHHHhCC
Confidence 12468999999999999999998 998 7999999999999999988632 1111 1122 566777777
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 429 REAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 429 ~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
+.+| ++|.++|+.|++.++++
T Consensus 385 G~sG-----ADi~~l~~eA~~~a~r~ 405 (434)
T 4b4t_M 385 EFNG-----AQLKAVTVEAGMIALRN 405 (434)
T ss_dssp SCCH-----HHHHHHHHHHHHHHHHH
T ss_pred CCCH-----HHHHHHHHHHHHHHHHc
Confidence 7777 89999999999999886
No 15
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.4e-25 Score=246.97 Aligned_cols=209 Identities=21% Similarity=0.278 Sum_probs=163.3
Q ss_pred HHhhhccccchHHHHHHHHHHHHhhccC-------CCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchh
Q 004834 208 KERLDSDHYGLVRVKQRIIEYLAVRKLK-------PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA 280 (728)
Q Consensus 208 ~~~L~~~i~G~~~vk~~i~~~l~~~~~~-------~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s 280 (728)
.++-..++.|++++++.|.+.+..+..+ .-.++.++||+||||||||++|+++|+.++.+|+.++++.+.+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s-- 281 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-- 281 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC--
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc--
Confidence 3345568999999999999988764432 2256779999999999999999999999999999999887654
Q ss_pred hhccCccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCCCC----------HHHHHHHhcCcccccccccCCCC
Q 004834 281 DIRGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRGD----------PASALLEVLDPEQNKTFNDHYLN 349 (728)
Q Consensus 281 ~l~g~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~~~----------~~~~Ll~~Ld~~~~~~~~d~~~~ 349 (728)
.|+|..+..+...|..+....| |+||||+|.+...+..+ ..+.||..||. +.
T Consensus 282 -------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg-----~~----- 344 (467)
T 4b4t_H 282 -------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDG-----FD----- 344 (467)
T ss_dssp -------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHS-----SC-----
T ss_pred -------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhc-----cC-----
Confidence 7899998888888888765555 99999999998765221 12445555542 11
Q ss_pred eeecCCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHH
Q 004834 350 VPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQR 426 (728)
Q Consensus 350 ~~~d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~ 426 (728)
...++++|+|||+++.+||+|++ ||+ .|+|+.|+.++|.+|++.++.. ..+. -.++ ++.|++.
T Consensus 345 ---~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~-----~~l~---~dvd---l~~LA~~ 410 (467)
T 4b4t_H 345 ---PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS-----MSVE---RGIR---WELISRL 410 (467)
T ss_dssp ---CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT-----SCBC---SSCC---HHHHHHH
T ss_pred ---CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC-----CCCC---CCCC---HHHHHHH
Confidence 23568999999999999999998 998 7999999999999999988632 1111 1222 5667776
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 427 YTREAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 427 ~~~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
..+.+| ++|.++|+.|++.++++
T Consensus 411 T~GfSG-----ADI~~l~~eAa~~Air~ 433 (467)
T 4b4t_H 411 CPNSTG-----AELRSVCTEAGMFAIRA 433 (467)
T ss_dssp CCSCCH-----HHHHHHHHHHHHHHHHH
T ss_pred CCCCCH-----HHHHHHHHHHHHHHHHc
Confidence 666677 89999999999999887
No 16
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2e-25 Score=246.47 Aligned_cols=208 Identities=23% Similarity=0.319 Sum_probs=163.7
Q ss_pred HhhhccccchHHHHHHHHHHHHhhccCC-------CCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhh
Q 004834 209 ERLDSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEAD 281 (728)
Q Consensus 209 ~~L~~~i~G~~~vk~~i~~~l~~~~~~~-------~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~ 281 (728)
++-..++.|++++++.+.+.+..+..++ -.++.++|||||||||||++|+++|+.++.+|+.++++...+
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s--- 253 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD--- 253 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC---
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc---
Confidence 3445689999999999999988754432 356679999999999999999999999999999999887654
Q ss_pred hccCccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCCC-----C-----HHHHHHHhcCcccccccccCCCCe
Q 004834 282 IRGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRG-----D-----PASALLEVLDPEQNKTFNDHYLNV 350 (728)
Q Consensus 282 l~g~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~~-----~-----~~~~Ll~~Ld~~~~~~~~d~~~~~ 350 (728)
.|+|..+..+...|..+....| ||||||+|.+.+.+.. + ..+.||..||...
T Consensus 254 ------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~----------- 316 (437)
T 4b4t_L 254 ------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD----------- 316 (437)
T ss_dssp ------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS-----------
T ss_pred ------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc-----------
Confidence 7899888888888887765544 9999999999876521 1 1345666666321
Q ss_pred eecCCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHc
Q 004834 351 PFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRY 427 (728)
Q Consensus 351 ~~d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~ 427 (728)
...+++||+|||+++.+||+|++ ||+ .|+|+.|+.++|.+|++.|+.+ ..+. -.+ .+..+++..
T Consensus 317 --~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-----~~~~---~d~---dl~~lA~~t 383 (437)
T 4b4t_L 317 --NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK-----VKKT---GEF---DFEAAVKMS 383 (437)
T ss_dssp --CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT-----SCBC---SCC---CHHHHHHTC
T ss_pred --CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcC-----CCCC---ccc---CHHHHHHhC
Confidence 13568999999999999999997 698 7999999999999999988632 1111 112 256777766
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 428 TREAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 428 ~~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
.+.+| ++|.++|+.|++.++++
T Consensus 384 ~G~sG-----ADi~~l~~eA~~~air~ 405 (437)
T 4b4t_L 384 DGFNG-----ADIRNCATEAGFFAIRD 405 (437)
T ss_dssp CSCCH-----HHHHHHHHHHHHHHHHT
T ss_pred CCCCH-----HHHHHHHHHHHHHHHHc
Confidence 67777 89999999999998876
No 17
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.92 E-value=1e-23 Score=224.32 Aligned_cols=260 Identities=23% Similarity=0.357 Sum_probs=201.5
Q ss_pred HhcHHHHHHhhhccccchHHHHHHHHHHHHhhcc---CCCCCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecC
Q 004834 201 DLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKL---KPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLG 274 (728)
Q Consensus 201 ~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~---~~~~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~ 274 (728)
...+..+.+.|.+.++|++.+++.+...+..... .+..+..+++|+||||||||++|+++|+.+ +.+++.++++
T Consensus 5 ~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~ 84 (311)
T 4fcw_A 5 REKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 84 (311)
T ss_dssp HHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence 4557778889999999999999999998876532 222333479999999999999999999998 4568899987
Q ss_pred Cccc---hhhhccCccccccCCc-chHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCe
Q 004834 275 GVKD---EADIRGHRRTYIGSMP-GRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNV 350 (728)
Q Consensus 275 ~~~~---~s~l~g~~~~yvG~~~-g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~ 350 (728)
.... .+.+.|..++|+|+.. +.+..++..++ ..|+||||+|++++.. ++.|+++|+.... .+ ..+.
T Consensus 85 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--~~vl~lDEi~~l~~~~----~~~Ll~~le~~~~---~~-~~~~ 154 (311)
T 4fcw_A 85 EYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRP--YSVILFDAIEKAHPDV----FNILLQMLDDGRL---TD-SHGR 154 (311)
T ss_dssp GCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCS--SEEEEEETGGGSCHHH----HHHHHHHHHHSEE---EC-TTSC
T ss_pred cccccccHHHhcCCCCccccccccchHHHHHHhCC--CeEEEEeChhhcCHHH----HHHHHHHHhcCEE---Ec-CCCC
Confidence 6543 5678888888999876 67778877655 3599999999998776 8999999986542 22 2367
Q ss_pred eecCCCcEEEEecCC--------------------------CCCCChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHH
Q 004834 351 PFDLSKVIFVATANR--------------------------AQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVL 403 (728)
Q Consensus 351 ~~d~~~vi~I~TtN~--------------------------~~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~ 403 (728)
.+++++++||+|||. ...++++|++||+ ++.|++|+.+++..|++.++... .
T Consensus 155 ~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~-~ 233 (311)
T 4fcw_A 155 TVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYL-R 233 (311)
T ss_dssp EEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHH-H
T ss_pred EEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHH-H
Confidence 889999999999999 3478999999995 89999999999999999887432 2
Q ss_pred hhcCCCccccccCHHHHHHHHH-HcccccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCC
Q 004834 404 DQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGA 482 (728)
Q Consensus 404 ~~~~~~~~~~~i~d~~l~~l~~-~~~~~~G~R~L~~~I~~l~r~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 482 (728)
...+.....+.+++++++++++ .|....|+|.|++.+++.|..+..+.+.. +...++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~---------------------~~~~~~~ 292 (311)
T 4fcw_A 234 ARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILA---------------------GEVKEGD 292 (311)
T ss_dssp HHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHH---------------------TSSCTTC
T ss_pred HHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHHh---------------------CCCCCCC
Confidence 2211112347899999999998 45557899999999999987666555443 3455667
Q ss_pred ceeEeeccCC
Q 004834 483 EVEMEVIPMG 492 (728)
Q Consensus 483 ~v~~~~~~~~ 492 (728)
+|.+++++..
T Consensus 293 ~i~i~~~~~~ 302 (311)
T 4fcw_A 293 RVQVDVGPAG 302 (311)
T ss_dssp EEEEEECSSS
T ss_pred EEEEEEECCe
Confidence 7777766543
No 18
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.91 E-value=5e-24 Score=232.54 Aligned_cols=238 Identities=18% Similarity=0.255 Sum_probs=170.4
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHhhcc---------CCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecC
Q 004834 204 LKAAKERLDSDHYGLVRVKQRIIEYLAVRKL---------KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLG 274 (728)
Q Consensus 204 l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~---------~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~ 274 (728)
...+...|++.++|++.+++.+...+..... ....++.++||+||||||||++|+++|+.++.+|+.++++
T Consensus 6 ~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~ 85 (363)
T 3hws_A 6 PHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADAT 85 (363)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechH
Confidence 4456777888899999999999988743211 1112456899999999999999999999999999999987
Q ss_pred CccchhhhccCccccccCC-cchHHHHHhhcC-----CCCcEEEEecccccCCCCCCC----------HHHHHHHhcCcc
Q 004834 275 GVKDEADIRGHRRTYIGSM-PGRLIDGLKRVG-----VCNPVMLLDEIDKTGSDVRGD----------PASALLEVLDPE 338 (728)
Q Consensus 275 ~~~~~s~l~g~~~~yvG~~-~g~l~~~~~~a~-----~~~~VlllDEidkl~~~~~~~----------~~~~Ll~~Ld~~ 338 (728)
.... ..|+|.. .+.+...+..+. ..++|+||||||++++...+. .++.|+++||..
T Consensus 86 ~l~~--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~ 157 (363)
T 3hws_A 86 TLTE--------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT 157 (363)
T ss_dssp HHTT--------CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC
T ss_pred Hhcc--------cccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCc
Confidence 5432 2466665 345555555432 124599999999999874332 589999999822
Q ss_pred c------ccccccCCCCeeecCCCcEEEEecCCC----------CC----------------------------------
Q 004834 339 Q------NKTFNDHYLNVPFDLSKVIFVATANRA----------QP---------------------------------- 368 (728)
Q Consensus 339 ~------~~~~~d~~~~~~~d~~~vi~I~TtN~~----------~~---------------------------------- 368 (728)
. .....+....+.+..+|++||+|+|.. ..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~ 237 (363)
T 3hws_A 158 VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 237 (363)
T ss_dssp ----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHH
T ss_pred eeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHc
Confidence 1 112222233345667788888888753 11
Q ss_pred -CChhhhCCee-EEEcCCCCHHHHHHHHHHh---hchHHHhhcCCCccccccCHHHHHHHHH-HcccccchHHHHHHHHH
Q 004834 369 -IPPPLLDRME-VIELPGYTPEEKLRIAMRH---LIPRVLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAA 442 (728)
Q Consensus 369 -l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~---l~~~~~~~~~~~~~~~~i~d~~l~~l~~-~~~~~~G~R~L~~~I~~ 442 (728)
|+|+|++||+ ++.|.+|+.+++.+|+... +..+.....+.....+.++++++++|++ .|.+..|+|.|++.|++
T Consensus 238 ~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~ 317 (363)
T 3hws_A 238 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEA 317 (363)
T ss_dssp TCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHH
T ss_pred CCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHH
Confidence 8999999998 6779999999999999872 3333332222223457899999999998 69999999999999999
Q ss_pred HHHHHHH
Q 004834 443 LARAAAV 449 (728)
Q Consensus 443 l~r~a~~ 449 (728)
.+..+..
T Consensus 318 ~~~~~l~ 324 (363)
T 3hws_A 318 ALLDTMY 324 (363)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9976543
No 19
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.89 E-value=2.7e-22 Score=215.28 Aligned_cols=207 Identities=19% Similarity=0.259 Sum_probs=161.8
Q ss_pred ccccchHHHHHHHHHHHHhhccCC------CCCCCEEEEEcCCCCChhHHHHHHHHHh-CCCeEEEecCCccchhhhccC
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKP------DARGPVLCFVGPPGVGKTSLASSIASAL-GRKFIRISLGGVKDEADIRGH 285 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~------~~~~~~lLL~GPpGtGKT~LakalA~~l-~~~~~~i~~~~~~~~s~l~g~ 285 (728)
++++|++++++.+.+.+..+..++ ..++.++||+||||||||++|+++|+.+ +.+++.++++....
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~------- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS------- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC-------
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh-------
Confidence 479999999999999886543221 2345689999999999999999999999 88899998876543
Q ss_pred ccccccCCcchHHHHHhhcCCCC-cEEEEecccccCCCCCCC-------HHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 286 RRTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVRGD-------PASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 286 ~~~yvG~~~g~l~~~~~~a~~~~-~VlllDEidkl~~~~~~~-------~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
.|+|.....+...|..+.... .||||||+|.+.+..... ..+.|+..|+.. ..+..++
T Consensus 85 --~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~------------~~~~~~v 150 (322)
T 1xwi_A 85 --KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV------------GVDNDGI 150 (322)
T ss_dssp --SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCS------------SSCCTTE
T ss_pred --hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcc------------cccCCCE
Confidence 577877777777776654333 499999999997754321 135566666531 1123568
Q ss_pred EEEEecCCCCCCChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHH
Q 004834 358 IFVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 436 (728)
Q Consensus 358 i~I~TtN~~~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L 436 (728)
+||+|||.++.++++|++||+ .+.++.|+.+++.+|++.++. .....+++..+..+++...+..|
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~----------~~~~~l~~~~l~~la~~t~G~sg---- 216 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLG----------TTQNSLTEADFRELGRKTDGYSG---- 216 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT----------TCCBCCCHHHHHHHHHTCTTCCH----
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHh----------cCCCCCCHHHHHHHHHHcCCCCH----
Confidence 999999999999999999996 799999999999999998852 12245789999999987766677
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 004834 437 ERNLAALARAAAVKVAEQE 455 (728)
Q Consensus 437 ~~~I~~l~r~a~~~~~~~~ 455 (728)
++|..+|++|++..+++.
T Consensus 217 -adl~~l~~~A~~~a~r~~ 234 (322)
T 1xwi_A 217 -ADISIIVRDALMQPVRKV 234 (322)
T ss_dssp -HHHHHHHHHHHTHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 899999999999988873
No 20
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.89 E-value=6.3e-24 Score=249.96 Aligned_cols=264 Identities=19% Similarity=0.261 Sum_probs=152.9
Q ss_pred hccccchHHHHHHHHHHHHhhccCC-------CCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhcc
Q 004834 212 DSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRG 284 (728)
Q Consensus 212 ~~~i~G~~~vk~~i~~~l~~~~~~~-------~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g 284 (728)
..++.|++++++.+.+.+..+..++ ..++.++||+||||||||++|+++|..++.+|+.++.+...+
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s------ 549 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT------ 549 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT------
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc------
Confidence 3578999999999999887654332 245568999999999999999999999999999887655433
Q ss_pred CccccccCCcchHHHHHhhcCCCC-cEEEEecccccCCCCCC---C-------HHHHHHHhcCcccccccccCCCCeeec
Q 004834 285 HRRTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVRG---D-------PASALLEVLDPEQNKTFNDHYLNVPFD 353 (728)
Q Consensus 285 ~~~~yvG~~~g~l~~~~~~a~~~~-~VlllDEidkl~~~~~~---~-------~~~~Ll~~Ld~~~~~~~~d~~~~~~~d 353 (728)
.|+|..+..+.+.|..+.... +||||||||.+.+.+.. + ..+.||..||... .
T Consensus 550 ---~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~-------------~ 613 (806)
T 3cf2_A 550 ---MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-------------T 613 (806)
T ss_dssp ---TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC-------------S
T ss_pred ---cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC-------------C
Confidence 799999999999998886544 49999999999876521 1 2577888887421 1
Q ss_pred CCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccc
Q 004834 354 LSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTRE 430 (728)
Q Consensus 354 ~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~ 430 (728)
..++++|+|||+++.+|++|++ ||+ .|+|+.|+.++|.+|++.++.+.. + -++.-+..|++...+.
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~-----~------~~~~dl~~la~~t~g~ 682 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP-----V------AKDVDLEFLAKMTNGF 682 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC-------------CCC-------------
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCC-----C------CCCCCHHHHHHhCCCC
Confidence 3468999999999999999999 998 799999999999999998863211 1 1122356666666666
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCceeEe--eccCCCcccccccccccCCce
Q 004834 431 AGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEME--VIPMGESTHEVSNTFRITSPL 508 (728)
Q Consensus 431 ~G~R~L~~~I~~l~r~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~ 508 (728)
+| ++|+.+|+.|++.++++......... . .... ........ .....++.+||..++...++
T Consensus 683 SG-----adi~~l~~~A~~~a~r~~~~~~~~~~---------~-~~~~-~~~~~~~~~~~~~~~i~~~df~~al~~~~p- 745 (806)
T 3cf2_A 683 SG-----ADLTEICQRACKLAIRESIESEIRRE---------R-ERQT-NPSAMEVEEDDPVPEIRRDHFEEAMRFARR- 745 (806)
T ss_dssp --------CHHHHHHHHHHHHHHHHHC----------------------------------CCC----CCTTTC------
T ss_pred CH-----HHHHHHHHHHHHHHHHHHHHhhhhhh---------h-hhcc-CccccccccccccCccCHHHHHHHHHhCCC-
Confidence 77 89999999999999987321100000 0 0000 00001111 11124677889888876655
Q ss_pred eechhhhhhhcCCCccC
Q 004834 509 VVDEAMLEKVLGPPRFD 525 (728)
Q Consensus 509 ~It~~~L~~~Lg~~~~~ 525 (728)
.++.++++.|-.-.+-+
T Consensus 746 Svs~~~l~~y~~~~~~f 762 (806)
T 3cf2_A 746 SVSDNDIRKYEMFAQTL 762 (806)
T ss_dssp ----------CCCC---
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 78999999886644433
No 21
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.88 E-value=6.7e-22 Score=216.66 Aligned_cols=240 Identities=19% Similarity=0.239 Sum_probs=161.1
Q ss_pred cHHHHHHhhhccccchHHHHHHHHHHHHh----hcc--------------------CCCCCCCEEEEEcCCCCChhHHHH
Q 004834 203 DLKAAKERLDSDHYGLVRVKQRIIEYLAV----RKL--------------------KPDARGPVLCFVGPPGVGKTSLAS 258 (728)
Q Consensus 203 ~l~~~~~~L~~~i~G~~~vk~~i~~~l~~----~~~--------------------~~~~~~~~lLL~GPpGtGKT~Lak 258 (728)
+...+.+.|++.++||+.+++.+...+.. ... .......+++|+||||||||++|+
T Consensus 11 ~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 11 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHH
T ss_pred CHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHH
Confidence 45677888999999999999999987731 110 012345679999999999999999
Q ss_pred HHHHHhCCCeEEEecCCccchhhhccCccccccCCc-chHHHHHhhcC-----CCCcEEEEecccccCCCCCCC------
Q 004834 259 SIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMP-GRLIDGLKRVG-----VCNPVMLLDEIDKTGSDVRGD------ 326 (728)
Q Consensus 259 alA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~-g~l~~~~~~a~-----~~~~VlllDEidkl~~~~~~~------ 326 (728)
++|+.++.+++.++++.... .+|+|... +.+...+.... ..++|+||||+|++.....+.
T Consensus 91 ~la~~l~~~~~~~~~~~~~~--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~ 162 (376)
T 1um8_A 91 TLAKHLDIPIAISDATSLTE--------AGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDV 162 (376)
T ss_dssp HHHHHTTCCEEEEEGGGCC----------------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-------------
T ss_pred HHHHHhCCCEEEecchhhhh--------cCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceeccc
Confidence 99999999999998876432 24666553 33444443322 135699999999998762111
Q ss_pred ----HHHHHHHhcCccc------ccccccCCCCeeecCCCcEEEEecCC-------------------------------
Q 004834 327 ----PASALLEVLDPEQ------NKTFNDHYLNVPFDLSKVIFVATANR------------------------------- 365 (728)
Q Consensus 327 ----~~~~Ll~~Ld~~~------~~~~~d~~~~~~~d~~~vi~I~TtN~------------------------------- 365 (728)
.++.|+++|+..+ ...+.++...+.++.+|++||+|+|.
T Consensus 163 ~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~ 242 (376)
T 1um8_A 163 SGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAI 242 (376)
T ss_dssp -CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTS
T ss_pred chHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHH
Confidence 4899999998532 11222223334467788899998873
Q ss_pred ----------CCCCChhhhCCee-EEEcCCCCHHHHHHHHHH---hhchHHHhhcCCCccccccCHHHHHHHHHH-cccc
Q 004834 366 ----------AQPIPPPLLDRME-VIELPGYTPEEKLRIAMR---HLIPRVLDQHGLGSEFLQIPEAMVKLVIQR-YTRE 430 (728)
Q Consensus 366 ----------~~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~---~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~-~~~~ 430 (728)
...+.|+|++||+ ++.|++++.++...|+.. ++..+...........+.++++++.+|++. |...
T Consensus 243 ~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 322 (376)
T 1um8_A 243 LHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERK 322 (376)
T ss_dssp GGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTT
T ss_pred HhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccc
Confidence 1147899999995 899999999999999974 333322222211223578999999999985 6667
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 004834 431 AGVRNLERNLAALARAAAVK 450 (728)
Q Consensus 431 ~G~R~L~~~I~~l~r~a~~~ 450 (728)
.|+|.|++.|++++..+..+
T Consensus 323 ~~~R~L~~~le~~~~~~~~~ 342 (376)
T 1um8_A 323 TGARGLRAIIEDFCLDIMFD 342 (376)
T ss_dssp CTGGGHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHhh
Confidence 99999999999998766544
No 22
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.87 E-value=1.1e-21 Score=207.86 Aligned_cols=233 Identities=21% Similarity=0.311 Sum_probs=167.2
Q ss_pred hcHHHHHHhhhccccchHHHHHHHHHHHHhhccC--------CCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEec
Q 004834 202 LDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLK--------PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 273 (728)
Q Consensus 202 ~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~--------~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~ 273 (728)
.+...+...+++.++|++.+++.+...+...... ....+.+++|+||||||||++|+++|+.++.+++.+++
T Consensus 4 ~~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~ 83 (310)
T 1ofh_A 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (310)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CCHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 3456778889999999999999999887652111 11345689999999999999999999999999999998
Q ss_pred CCccchhhhccCccccccCCcc-hHHHHHhhcC------CCCcEEEEecccccCCCCCCC--------HHHHHHHhcCcc
Q 004834 274 GGVKDEADIRGHRRTYIGSMPG-RLIDGLKRVG------VCNPVMLLDEIDKTGSDVRGD--------PASALLEVLDPE 338 (728)
Q Consensus 274 ~~~~~~s~l~g~~~~yvG~~~g-~l~~~~~~a~------~~~~VlllDEidkl~~~~~~~--------~~~~Ll~~Ld~~ 338 (728)
+...+. +|+|...+ .+...+..++ ..++|+||||+|++.++..+. .++.|+++|+..
T Consensus 84 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~ 155 (310)
T 1ofh_A 84 TKFTEV--------GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGS 155 (310)
T ss_dssp GGGSSC--------CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCC
T ss_pred hhcccC--------CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCC
Confidence 775432 46665443 2333333221 124699999999998765211 167899999853
Q ss_pred cccccccCCCCeeecCCCcEEEEec----CCCCCCChhhhCCee-EEEcCCCCHHHHHHHHHH---hhchHH---HhhcC
Q 004834 339 QNKTFNDHYLNVPFDLSKVIFVATA----NRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMR---HLIPRV---LDQHG 407 (728)
Q Consensus 339 ~~~~~~d~~~~~~~d~~~vi~I~Tt----N~~~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~---~l~~~~---~~~~~ 407 (728)
. +.... + ..+.++++||+|+ +.+..++++|++||+ +|.|++|+.+++.+|++. .+..+. ....+
T Consensus 156 ~---~~~~~-~-~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~ 230 (310)
T 1ofh_A 156 T---VSTKH-G-MVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEG 230 (310)
T ss_dssp E---EEETT-E-EEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTT
T ss_pred e---Eeccc-c-cccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 2 11111 1 3456788999984 566789999999997 699999999999999985 222221 22222
Q ss_pred CCccccccCHHHHHHHHHHccc------ccchHHHHHHHHHHHHHHHHH
Q 004834 408 LGSEFLQIPEAMVKLVIQRYTR------EAGVRNLERNLAALARAAAVK 450 (728)
Q Consensus 408 ~~~~~~~i~d~~l~~l~~~~~~------~~G~R~L~~~I~~l~r~a~~~ 450 (728)
..+.+++++++++++.+.. ..++|.+.+.++++++.++.+
T Consensus 231 ---~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~ 276 (310)
T 1ofh_A 231 ---VNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFS 276 (310)
T ss_dssp ---CEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHH
T ss_pred ---CeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcC
Confidence 2468999999999985533 589999999999988765543
No 23
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.87 E-value=5.6e-22 Score=212.79 Aligned_cols=207 Identities=15% Similarity=0.183 Sum_probs=160.6
Q ss_pred ccccchHHHHHHHHHHHHhhccC------CCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLK------PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 286 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~------~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~ 286 (728)
.+++|++.+++.+.+++..+... ...++.++||+||||||||++|+++|+.++.+++.++++....
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~-------- 89 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS-------- 89 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT--------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh--------
Confidence 37999999999999988654322 2234568999999999999999999999999999998755322
Q ss_pred cccccCCcchHHHHHhhcCCCC-cEEEEecccccCCCCCCC-------HHHHHHHhcCcccccccccCCCCeeecCCCcE
Q 004834 287 RTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVRGD-------PASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 358 (728)
Q Consensus 287 ~~yvG~~~g~l~~~~~~a~~~~-~VlllDEidkl~~~~~~~-------~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi 358 (728)
.|+|.....+...|..+.... .||||||||.+.+..... ..+.|+..|+... ....+++
T Consensus 90 -~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~------------~~~~~v~ 156 (322)
T 3eie_A 90 -KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG------------NDSQGVL 156 (322)
T ss_dssp -TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG------------TSCCCEE
T ss_pred -cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc------------ccCCceE
Confidence 567777777777776655444 499999999998754211 1466777776321 1234689
Q ss_pred EEEecCCCCCCChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHH
Q 004834 359 FVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 437 (728)
Q Consensus 359 ~I~TtN~~~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~ 437 (728)
||+|||.++.++++|++||+ .+.++.|+.+++.+|++.++. .....+++..+..+++...+..|
T Consensus 157 vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~----------~~~~~~~~~~l~~la~~t~g~sg----- 221 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVG----------DTPCVLTKEDYRTLGAMTEGYSG----- 221 (322)
T ss_dssp EEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHT----------TCCCCCCHHHHHHHHHTTTTCCH-----
T ss_pred EEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhc----------cCCCCCCHHHHHHHHHHcCCCCH-----
Confidence 99999999999999999997 799999999999999998752 12346789999999987666666
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004834 438 RNLAALARAAAVKVAEQE 455 (728)
Q Consensus 438 ~~I~~l~r~a~~~~~~~~ 455 (728)
++|..+|+.|++..+++.
T Consensus 222 ~di~~l~~~a~~~a~r~~ 239 (322)
T 3eie_A 222 SDIAVVVKDALMQPIRKI 239 (322)
T ss_dssp HHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 889999999999888874
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.86 E-value=4.8e-21 Score=214.38 Aligned_cols=207 Identities=19% Similarity=0.244 Sum_probs=155.9
Q ss_pred ccccchHHHHHHHHHHHHhhccCC------CCCCCEEEEEcCCCCChhHHHHHHHHHh-CCCeEEEecCCccchhhhccC
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKP------DARGPVLCFVGPPGVGKTSLASSIASAL-GRKFIRISLGGVKDEADIRGH 285 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~------~~~~~~lLL~GPpGtGKT~LakalA~~l-~~~~~~i~~~~~~~~s~l~g~ 285 (728)
.+++|++.+++.+.+.+..+...+ ..++.++||+||||||||++|+++|+.+ +.+|+.++++...+
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~------- 206 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS------- 206 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh-------
Confidence 368999999999999886543222 1345689999999999999999999999 88898888776432
Q ss_pred ccccccCCcchHHHHHhhcCCC-CcEEEEecccccCCCCCCC-------HHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 286 RRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRGD-------PASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 286 ~~~yvG~~~g~l~~~~~~a~~~-~~VlllDEidkl~~~~~~~-------~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
.|+|.....+...|..+... ..||||||||.+.+..... ..+.|+..|+.. ..+..++
T Consensus 207 --~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~------------~~~~~~v 272 (444)
T 2zan_A 207 --KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV------------GVDNDGI 272 (444)
T ss_dssp -------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCS------------SCCCSSC
T ss_pred --hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCc------------ccCCCCE
Confidence 46777777777777655433 3499999999997654221 245666666532 1123568
Q ss_pred EEEEecCCCCCCChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHH
Q 004834 358 IFVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 436 (728)
Q Consensus 358 i~I~TtN~~~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L 436 (728)
+||+|||.++.++++|++||+ ++.++.|+.+++..|++.++. .....+++..+..|++...+..|
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~----------~~~~~l~~~~l~~la~~t~G~sg---- 338 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLG----------STQNSLTEADFQELGRKTDGYSG---- 338 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT----------TSCEECCHHHHHHHHHHTTTCCH----
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHh----------cCCCCCCHHHHHHHHHHcCCCCH----
Confidence 999999999999999999997 799999999999999998852 12346789999999987777777
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 004834 437 ERNLAALARAAAVKVAEQE 455 (728)
Q Consensus 437 ~~~I~~l~r~a~~~~~~~~ 455 (728)
++|..+|+.|++..+++.
T Consensus 339 -adl~~l~~~a~~~a~r~~ 356 (444)
T 2zan_A 339 -ADISIIVRDALMQPVRKV 356 (444)
T ss_dssp -HHHHHHHHHHHTHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 899999999999998874
No 25
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.86 E-value=1.6e-21 Score=212.07 Aligned_cols=206 Identities=15% Similarity=0.185 Sum_probs=153.8
Q ss_pred ccccchHHHHHHHHHHHHhhccC------CCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLK------PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 286 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~------~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~ 286 (728)
.+++|++.+++.+.+.+...... ...++.++||+||||||||++|+++|+.++.+++.++++....
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~-------- 122 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS-------- 122 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS--------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh--------
Confidence 36899999999999887654221 1234567999999999999999999999999999988764322
Q ss_pred cccccCCcchHHHHHhhcCCC-CcEEEEecccccCCCCCCC-------HHHHHHHhcCcccccccccCCCCeeecCCCcE
Q 004834 287 RTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRGD-------PASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 358 (728)
Q Consensus 287 ~~yvG~~~g~l~~~~~~a~~~-~~VlllDEidkl~~~~~~~-------~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi 358 (728)
.|+|.....+...|..+... ..||||||+|.+.+..... ..+.|+..|+... ....+++
T Consensus 123 -~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~------------~~~~~v~ 189 (355)
T 2qp9_X 123 -KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG------------NDSQGVL 189 (355)
T ss_dssp -CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---------------CCEE
T ss_pred -hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc------------ccCCCeE
Confidence 46777766666666655433 3499999999998754211 1466777666321 1235689
Q ss_pred EEEecCCCCCCChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHH
Q 004834 359 FVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 437 (728)
Q Consensus 359 ~I~TtN~~~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~ 437 (728)
||+|||.++.+++++++||+ .+.++.|+.+++.+|++.++. .....+++..+..|++...+..|
T Consensus 190 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~----------~~~~~~~~~~l~~la~~t~G~sg----- 254 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVG----------DTPSVLTKEDYRTLGAMTEGYSG----- 254 (355)
T ss_dssp EEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT----------TSCBCCCHHHHHHHHHHTTTCCH-----
T ss_pred EEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHh----------hCCCCCCHHHHHHHHHHcCCCCH-----
Confidence 99999999999999999996 799999999999999998753 11245788999999987766666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004834 438 RNLAALARAAAVKVAEQ 454 (728)
Q Consensus 438 ~~I~~l~r~a~~~~~~~ 454 (728)
++|..+|++|++.++++
T Consensus 255 ~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 255 SDIAVVVKDALMQPIRK 271 (355)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88999999999998876
No 26
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.85 E-value=1.7e-21 Score=229.27 Aligned_cols=208 Identities=23% Similarity=0.307 Sum_probs=163.6
Q ss_pred hhhccccchHHHHHHHHHHHHhhccCCC-------CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhh
Q 004834 210 RLDSDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADI 282 (728)
Q Consensus 210 ~L~~~i~G~~~vk~~i~~~l~~~~~~~~-------~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l 282 (728)
+-.+++.|++++++.|.+.+..+..++. .++.++||+||||||||+||+++|+.++.+++.+++....+
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s---- 276 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS---- 276 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS----
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc----
Confidence 3456899999999999998877544332 45679999999999999999999999999999998765433
Q ss_pred ccCccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCCC---C----HHHHHHHhcCcccccccccCCCCeeecC
Q 004834 283 RGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRG---D----PASALLEVLDPEQNKTFNDHYLNVPFDL 354 (728)
Q Consensus 283 ~g~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~~---~----~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~ 354 (728)
.|+|..+..+...|..+....| ||||||+|.+.+.+.+ + ..+.|+..||... ..
T Consensus 277 -----k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~-------------~~ 338 (806)
T 3cf2_A 277 -----KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-------------QR 338 (806)
T ss_dssp -----SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC-------------GG
T ss_pred -----ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccc-------------cc
Confidence 6888888899999988875544 9999999999886522 1 1456777776421 12
Q ss_pred CCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHccccc
Q 004834 355 SKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 431 (728)
Q Consensus 355 ~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~ 431 (728)
.++++|+|||+++.++++|++ ||+ .|+++.|+.++|.+|++.++.... ..++..+..++..+.+..
T Consensus 339 ~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~-----------~~~dvdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-----------LADDVDLEQVANETHGHV 407 (806)
T ss_dssp GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE-----------ECTTCCHHHHHHHCCSCC
T ss_pred CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC-----------CCcccCHHHHHHhcCCCC
Confidence 468999999999999999998 998 799999999999999998853210 112233677888777777
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHh
Q 004834 432 GVRNLERNLAALARAAAVKVAEQE 455 (728)
Q Consensus 432 G~R~L~~~I~~l~r~a~~~~~~~~ 455 (728)
| ++|..+|++|++.++++.
T Consensus 408 g-----aDL~~Lv~eA~~~A~~r~ 426 (806)
T 3cf2_A 408 G-----ADLAALCSEAALQAIRKK 426 (806)
T ss_dssp H-----HHHHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHHHHhc
Confidence 7 889999999999988763
No 27
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.84 E-value=1.2e-20 Score=200.48 Aligned_cols=226 Identities=23% Similarity=0.292 Sum_probs=167.5
Q ss_pred CCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhc---------cCCCCCCCEEEEEcCCCCChhHHHHHHHH
Q 004834 192 PWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRK---------LKPDARGPVLCFVGPPGVGKTSLASSIAS 262 (728)
Q Consensus 192 P~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~---------~~~~~~~~~lLL~GPpGtGKT~LakalA~ 262 (728)
||+.........+.++...++++++|++.+++.+.+++.... +....++.+++|+||||||||++|+++|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 10 SIDLRAEYEGSGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCHHHHHHHTTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCChhhccccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 333333333456777888889899999999999998776432 12234566899999999999999999999
Q ss_pred HhCC-------CeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecccccCCCCC-----CCHHHH
Q 004834 263 ALGR-------KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVR-----GDPASA 330 (728)
Q Consensus 263 ~l~~-------~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~-----~~~~~~ 330 (728)
.++. +++.++++.... .|+|...+.+...+..+. ++|+||||+|.+..... .+.++.
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~l~~---------~~~g~~~~~~~~~~~~~~--~~vl~iDEid~l~~~~~~~~~~~~~~~~ 158 (309)
T 3syl_A 90 LLHRLGYVRKGHLVSVTRDDLVG---------QYIGHTAPKTKEVLKRAM--GGVLFIDEAYYLYRPDNERDYGQEAIEI 158 (309)
T ss_dssp HHHHTTSSSSCCEEEECGGGTCC---------SSTTCHHHHHHHHHHHHT--TSEEEEETGGGSCCCC---CCTHHHHHH
T ss_pred HHHhcCCcCCCcEEEEcHHHhhh---------hcccccHHHHHHHHHhcC--CCEEEEEChhhhccCCCcccccHHHHHH
Confidence 9843 677776554321 466666666677776663 46999999999965431 123688
Q ss_pred HHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC-----CCChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHh
Q 004834 331 LLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-----PIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLD 404 (728)
Q Consensus 331 Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~-----~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~ 404 (728)
|++.|+.. ..+++||+|+|... .++|+|++||+ +|.|++|+.+++..|++.++..
T Consensus 159 Ll~~l~~~---------------~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~---- 219 (309)
T 3syl_A 159 LLQVMENN---------------RDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD---- 219 (309)
T ss_dssp HHHHHHHC---------------TTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH----
T ss_pred HHHHHhcC---------------CCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH----
Confidence 88888742 13568889998753 35799999995 8999999999999999988632
Q ss_pred hcCCCccccccCHHHHHHHHHHc------ccccchHHHHHHHHHHHHHHHHHHHH
Q 004834 405 QHGLGSEFLQIPEAMVKLVIQRY------TREAGVRNLERNLAALARAAAVKVAE 453 (728)
Q Consensus 405 ~~~~~~~~~~i~d~~l~~l~~~~------~~~~G~R~L~~~I~~l~r~a~~~~~~ 453 (728)
. .+.++++++..+++.+ .+..++|.+++.++..+..++.+++.
T Consensus 220 -~-----~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~ 268 (309)
T 3syl_A 220 -Q-----NYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFT 268 (309)
T ss_dssp -T-----TCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -c-----CCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 2 3678999999998753 33445999999999999888777775
No 28
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.83 E-value=4.3e-20 Score=195.47 Aligned_cols=215 Identities=15% Similarity=0.180 Sum_probs=133.5
Q ss_pred cccchHHHHHHHHHHHHhhccC--CCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCcccccc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLK--PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIG 291 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~--~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG 291 (728)
++|.-+...+.+...+....+. ....+.++||+||||||||++|+++|+.++.+++.+++++..+ .|+|
T Consensus 8 ~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~---------~~~g 78 (293)
T 3t15_A 8 GFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELES---------GNAG 78 (293)
T ss_dssp TEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHC---------C---
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhh---------ccCc
Confidence 3444444444444444333221 1234458999999999999999999999999999999876543 5788
Q ss_pred CCcchHHHHHhhc-----CCCCcEEEEecccccCCCCCCCH---------HHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 292 SMPGRLIDGLKRV-----GVCNPVMLLDEIDKTGSDVRGDP---------ASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 292 ~~~g~l~~~~~~a-----~~~~~VlllDEidkl~~~~~~~~---------~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
..++.+.+.|..+ ...++|+||||||++.+...+++ ++.|+++||..+...+... ....+.+++
T Consensus 79 ~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~--~~~~~~~~v 156 (293)
T 3t15_A 79 EPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM--YNKQENARV 156 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-------------CCCCC
T ss_pred hhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccc--cccccCCCc
Confidence 8888888888776 34456999999999988554332 3899999986543322221 123356789
Q ss_pred EEEEecCCCCCCChhhhC--CeeE-EEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchH
Q 004834 358 IFVATANRAQPIPPPLLD--RMEV-IELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVR 434 (728)
Q Consensus 358 i~I~TtN~~~~l~~~Ll~--R~~v-I~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R 434 (728)
+||+|||.++.++++|++ ||+. |.+ |+.+++.+|++.++.+ -.++.+.+..++..|++. .+.
T Consensus 157 ~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~~~r~~Il~~~~~~------------~~~~~~~l~~~~~~~~~~-~l~ 221 (293)
T 3t15_A 157 PIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCTGIFRT------------DNVPAEDVVKIVDNFPGQ-SID 221 (293)
T ss_dssp CEEEECSSCCC--CHHHHHHHEEEEEEC--CCHHHHHHHHHHHHGG------------GCCCHHHHHHHHHHSCSC-CHH
T ss_pred EEEEecCCcccCCHHHhCCCCCceeEeC--cCHHHHHHHHHHhccC------------CCCCHHHHHHHhCCCCcc-cHH
Confidence 999999999999999996 9984 654 5999999999987531 245677788888888652 222
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004834 435 NLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 435 ~L~~~I~~l~r~a~~~~~~~ 454 (728)
.+...-.+++......+++.
T Consensus 222 ~~~~l~~~~~~~~i~~~~~~ 241 (293)
T 3t15_A 222 FFGALRARVYDDEVRKWVSG 241 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 22222233444444455554
No 29
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.83 E-value=6.6e-20 Score=201.80 Aligned_cols=206 Identities=22% Similarity=0.302 Sum_probs=151.5
Q ss_pred cccchHHHHHHHHHHHHhhccCCC------CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCcc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPD------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRR 287 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~------~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~ 287 (728)
+++|++.+++.+.+++......+. .++.++||+||||||||++|+++|..++.+++.++++....
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~--------- 186 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS--------- 186 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-----------
T ss_pred HhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc---------
Confidence 689999999999998866543222 34579999999999999999999999999999999876543
Q ss_pred ccccCCcchHHHHHhhcCCCC-cEEEEecccccCCCCCCC-------HHHHHHHhcCcccccccccCCCCeeecCCCcEE
Q 004834 288 TYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVRGD-------PASALLEVLDPEQNKTFNDHYLNVPFDLSKVIF 359 (728)
Q Consensus 288 ~yvG~~~g~l~~~~~~a~~~~-~VlllDEidkl~~~~~~~-------~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~ 359 (728)
.|+|.....+...|..+.... .||||||||.+....... .++.|+..|+..... ...+++|
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----------~~~~v~v 255 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA-----------GDDRVLV 255 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----------------CEEE
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc-----------CCCCEEE
Confidence 467777766666666554434 499999999996654211 145666666532110 1245789
Q ss_pred EEecCCCCCCChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHH
Q 004834 360 VATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLER 438 (728)
Q Consensus 360 I~TtN~~~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~ 438 (728)
|+|||.++.+++++++||. ++.|+.|+.+++.+|++.++. . ....++++.+..++....+..| +
T Consensus 256 I~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~-----~-----~~~~l~~~~~~~la~~~~g~~~-----~ 320 (389)
T 3vfd_A 256 MGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLC-----K-----QGSPLTQKELAQLARMTDGYSG-----S 320 (389)
T ss_dssp EEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT-----T-----SCCCSCHHHHHHHHHHTTTCCH-----H
T ss_pred EEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHH-----h-----cCCCCCHHHHHHHHHHcCCCCH-----H
Confidence 9999999999999999997 799999999999999988742 1 2356889999999987766665 7
Q ss_pred HHHHHHHHHHHHHHHH
Q 004834 439 NLAALARAAAVKVAEQ 454 (728)
Q Consensus 439 ~I~~l~r~a~~~~~~~ 454 (728)
.|..+|+.++...+++
T Consensus 321 ~l~~L~~~a~~~~~re 336 (389)
T 3vfd_A 321 DLTALAKDAALGPIRE 336 (389)
T ss_dssp HHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888999888887776
No 30
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.82 E-value=2.1e-20 Score=198.57 Aligned_cols=204 Identities=21% Similarity=0.299 Sum_probs=148.7
Q ss_pred ccccchHHHHHHHHHHHHhhccC-------CCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccC
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLK-------PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGH 285 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~-------~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~ 285 (728)
.+++|++.+++.+.+++.....+ .-.++.+++|+||||||||++|+++|+.++.+++.++++...+
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~------- 87 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT------- 87 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH-------
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh-------
Confidence 36999999999999988754221 1245678999999999999999999999999999887654322
Q ss_pred ccccccCCcchHHHHHhhcCCC-CcEEEEecccccCCCCC----------CCHHHHHHHhcCcccccccccCCCCeeecC
Q 004834 286 RRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVR----------GDPASALLEVLDPEQNKTFNDHYLNVPFDL 354 (728)
Q Consensus 286 ~~~yvG~~~g~l~~~~~~a~~~-~~VlllDEidkl~~~~~----------~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~ 354 (728)
.|+|.....+...|..+... ..|+||||+|.+.+... ...++.|+..|+... ..
T Consensus 88 --~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~-------------~~ 152 (301)
T 3cf0_A 88 --MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-------------TK 152 (301)
T ss_dssp --HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-------------TT
T ss_pred --hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-------------CC
Confidence 45676666677777665433 35999999999865321 112577888876311 12
Q ss_pred CCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHccccc
Q 004834 355 SKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 431 (728)
Q Consensus 355 ~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~ 431 (728)
.+++||+|||.++.+++++++ ||+ .|+++.|+.+++.+|++.++.. .++. ..++. ..++....+..
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~-----~~~~---~~~~~---~~la~~~~g~s 221 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK-----SPVA---KDVDL---EFLAKMTNGFS 221 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT-----SCBC---SSCCH---HHHHHTCSSCC
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHcc-----CCCC---ccchH---HHHHHHcCCCC
Confidence 468999999999999999998 997 7999999999999999887632 2211 22333 34554444445
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 004834 432 GVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 432 G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
| ++|.++|++|++.++++
T Consensus 222 g-----~dl~~l~~~a~~~a~~~ 239 (301)
T 3cf0_A 222 G-----ADLTEICQRACKLAIRE 239 (301)
T ss_dssp H-----HHHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHHHHH
Confidence 5 58888888888877765
No 31
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.82 E-value=8.6e-20 Score=198.62 Aligned_cols=207 Identities=22% Similarity=0.307 Sum_probs=155.4
Q ss_pred ccccchHHHHHHHHHHHHhhccCCC------CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPD------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 286 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~------~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~ 286 (728)
.+++|++.+++.+.+.+......+. ..+.++||+||||||||++|+++|+.++.+++.++++....
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~-------- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-------- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC--------
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc--------
Confidence 3689999999999998876432221 34568999999999999999999999999999998875432
Q ss_pred cccccCCcchHHHHHhhcCCC-CcEEEEecccccCCCCCCC-------HHHHHHHhcCcccccccccCCCCeeecCCCcE
Q 004834 287 RTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRGD-------PASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 358 (728)
Q Consensus 287 ~~yvG~~~g~l~~~~~~a~~~-~~VlllDEidkl~~~~~~~-------~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi 358 (728)
.|+|.....+...+..+... ..||||||||.+.+..... .++.|+..++.... ....+++
T Consensus 156 -~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~-----------~~~~~v~ 223 (357)
T 3d8b_A 156 -KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATT-----------SSEDRIL 223 (357)
T ss_dssp -SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC---------------CCCCEE
T ss_pred -cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccc-----------cCCCCEE
Confidence 45665555555555544322 3599999999997654211 13556666653210 0124678
Q ss_pred EEEecCCCCCCChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHH
Q 004834 359 FVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 437 (728)
Q Consensus 359 ~I~TtN~~~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~ 437 (728)
||+|||.++.+++++++||. .+.++.|+.+++.+|++.++. .. ...++++.+..+++...+..|
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~-----~~-----~~~l~~~~l~~la~~t~G~s~----- 288 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMS-----KE-----QCCLSEEEIEQIVQQSDAFSG----- 288 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHH-----TS-----CBCCCHHHHHHHHHHTTTCCH-----
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHh-----hc-----CCCccHHHHHHHHHHcCCCCH-----
Confidence 99999999999999999997 799999999999999988742 11 256889999999987766666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004834 438 RNLAALARAAAVKVAEQ 454 (728)
Q Consensus 438 ~~I~~l~r~a~~~~~~~ 454 (728)
++|..+|+.|+...+++
T Consensus 289 ~dl~~l~~~a~~~~ir~ 305 (357)
T 3d8b_A 289 ADMTQLCREASLGPIRS 305 (357)
T ss_dssp HHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88999999999888876
No 32
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.82 E-value=8.8e-20 Score=192.88 Aligned_cols=208 Identities=22% Similarity=0.290 Sum_probs=153.1
Q ss_pred ccccchHHHHHHHHHHHHhhccCC------CCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKP------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 286 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~------~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~ 286 (728)
.+++|++.+++.+.+.+.....++ ..++.+++|+||||||||++|+++|+.++.+++.++++....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~-------- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS-------- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS--------
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh--------
Confidence 368999999999999876543211 134678999999999999999999999999999998866432
Q ss_pred cccccCCcchHHHHHhhcCCC-CcEEEEecccccCCCCCC-------CHHHHHHHhcCcccccccccCCCCeeecCCCcE
Q 004834 287 RTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRG-------DPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 358 (728)
Q Consensus 287 ~~yvG~~~g~l~~~~~~a~~~-~~VlllDEidkl~~~~~~-------~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi 358 (728)
.|.|.....+...+..+... ..|+||||+|.+...... ...+.|+..++..... ....+++
T Consensus 93 -~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~----------~~~~~v~ 161 (297)
T 3b9p_A 93 -KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN----------PDGDRIV 161 (297)
T ss_dssp -SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----------------CEE
T ss_pred -cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc----------CCCCcEE
Confidence 35555444455555444322 359999999999765421 1134566666532110 0124578
Q ss_pred EEEecCCCCCCChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHH
Q 004834 359 FVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 437 (728)
Q Consensus 359 ~I~TtN~~~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~ 437 (728)
||+|||.++.+++++++||+ .+.++.|+.+++..|++.++. .. ...++++.+..+++...+..|
T Consensus 162 vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~-----~~-----~~~~~~~~~~~la~~~~g~~~----- 226 (297)
T 3b9p_A 162 VLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQ-----KQ-----GSPLDTEALRRLAKITDGYSG----- 226 (297)
T ss_dssp EEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHG-----GG-----SCCSCHHHHHHHHHHTTTCCH-----
T ss_pred EEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHH-----hc-----CCCCCHHHHHHHHHHcCCCCH-----
Confidence 99999999999999999996 799999999999999988753 11 245789999999987666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004834 438 RNLAALARAAAVKVAEQ 454 (728)
Q Consensus 438 ~~I~~l~r~a~~~~~~~ 454 (728)
++|..+|+.|+...+++
T Consensus 227 ~~l~~l~~~a~~~a~r~ 243 (297)
T 3b9p_A 227 SDLTALAKDAALEPIRE 243 (297)
T ss_dssp HHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78889999988888776
No 33
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=187.26 Aligned_cols=205 Identities=22% Similarity=0.277 Sum_probs=135.1
Q ss_pred ccccchHHHHHHHHHHHHhhccC------CCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLK------PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 286 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~------~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~ 286 (728)
++++|++.+++.+.+++...... ....+.+++|+||||||||++|+++|+.++.+++.++++...+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~-------- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVE-------- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSS--------
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHh--------
Confidence 47899999999998877652211 1145568999999999999999999999999999999876533
Q ss_pred cccccCCcchHHHHHhhcCCC-CcEEEEecccccCCCCCC--------CH---HHHHHHhcCcccccccccCCCCeeecC
Q 004834 287 RTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRG--------DP---ASALLEVLDPEQNKTFNDHYLNVPFDL 354 (728)
Q Consensus 287 ~~yvG~~~g~l~~~~~~a~~~-~~VlllDEidkl~~~~~~--------~~---~~~Ll~~Ld~~~~~~~~d~~~~~~~d~ 354 (728)
.|.|.....+...+..+... +.|+||||+|.+...... .. .+.|++.++... ..
T Consensus 78 -~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-------------~~ 143 (262)
T 2qz4_A 78 -VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG-------------TT 143 (262)
T ss_dssp -SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC-------------TT
T ss_pred -hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC-------------CC
Confidence 34444444555555554322 359999999999654311 11 233444443210 12
Q ss_pred CCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHH-HHHHHHHHcccc
Q 004834 355 SKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEA-MVKLVIQRYTRE 430 (728)
Q Consensus 355 ~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~-~l~~l~~~~~~~ 430 (728)
.++++|+|+|.++.+++++++ ||+ .+.++.|+.+++.+|++.++. ..+ +..+++ ....++....+.
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~-----~~~-----~~~~~~~~~~~l~~~~~g~ 213 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLK-----SLK-----LTQSSTFYSQRLAELTPGF 213 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHH-----HTT-----CCBTHHHHHHHHHHTCTTC
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHH-----hCC-----CCcchhhHHHHHHHHCCCC
Confidence 467999999999999999999 996 799999999999999998853 222 233443 345666655444
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q 004834 431 AGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 431 ~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
.| +.|..+|+.|+..+.+.
T Consensus 214 ~~-----~~l~~l~~~a~~~a~~~ 232 (262)
T 2qz4_A 214 SG-----ADIANICNEAALHAARE 232 (262)
T ss_dssp CH-----HHHHHHHHHHHTC----
T ss_pred CH-----HHHHHHHHHHHHHHHHc
Confidence 55 67778888777665543
No 34
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.80 E-value=7e-20 Score=206.62 Aligned_cols=205 Identities=22% Similarity=0.296 Sum_probs=155.2
Q ss_pred hccccchHHHHHHHHHHHHhhccC-------CCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhcc
Q 004834 212 DSDHYGLVRVKQRIIEYLAVRKLK-------PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRG 284 (728)
Q Consensus 212 ~~~i~G~~~vk~~i~~~l~~~~~~-------~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g 284 (728)
..+++|++.+++.+.+++...... ...++.++||+||||||||++|+++|+.++.+|+.++++...+
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~------ 276 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS------ 276 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHT------
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhh------
Confidence 347999999999999988654221 1245668999999999999999999999999999999866432
Q ss_pred CccccccCCcchHHHHHhhcCCCC-cEEEEecccccCCCCCC-------CHHHHHHHhcCcccccccccCCCCeeecCCC
Q 004834 285 HRRTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVRG-------DPASALLEVLDPEQNKTFNDHYLNVPFDLSK 356 (728)
Q Consensus 285 ~~~~yvG~~~g~l~~~~~~a~~~~-~VlllDEidkl~~~~~~-------~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~ 356 (728)
.|.|...+.+...|..+.... .+|||||||.+.++... ..++.|+.+|+... ...+
T Consensus 277 ---~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-------------~~~~ 340 (489)
T 3hu3_A 277 ---KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-------------QRAH 340 (489)
T ss_dssp ---SCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-------------TTSC
T ss_pred ---hhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc-------------cCCc
Confidence 466777777777777665433 49999999999876531 12577888887421 1246
Q ss_pred cEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccch
Q 004834 357 VIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGV 433 (728)
Q Consensus 357 vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~ 433 (728)
++||+|||.++.+++++++ ||+ .|.|+.|+.+++.+|++.++.. .. +. .+..+..++....+..|
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~-----~~-----l~-~~~~l~~la~~t~g~s~- 408 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN-----MK-----LA-DDVDLEQVANETHGHVG- 408 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT-----SC-----BC-TTCCHHHHHHTCTTCCH-
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc-----CC-----Cc-chhhHHHHHHHccCCcH-
Confidence 7999999999999999998 896 7999999999999999987521 11 11 22235566665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004834 434 RNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 434 R~L~~~I~~l~r~a~~~~~~~ 454 (728)
++|..+|++|+...+++
T Consensus 409 ----~dL~~L~~~A~~~a~r~ 425 (489)
T 3hu3_A 409 ----ADLAALCSEAALQAIRK 425 (489)
T ss_dssp ----HHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHHHHh
Confidence 78999999999988876
No 35
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.80 E-value=2.7e-19 Score=187.84 Aligned_cols=207 Identities=23% Similarity=0.348 Sum_probs=147.1
Q ss_pred ccccchHHHHHHHHHHHHhhccC-------CCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccC
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLK-------PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGH 285 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~-------~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~ 285 (728)
.+++|++.+++.+.+++...... ....+.+++|+||||||||++|+++|+.++.+++.+++.....
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~------- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK------- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC-------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH-------
Confidence 36899999999999887654221 1245678999999999999999999999999999998765432
Q ss_pred ccccccCCcchHHHHHhhcCCCC-cEEEEecccccCCCCCC-------CHHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 286 RRTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVRG-------DPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 286 ~~~yvG~~~g~l~~~~~~a~~~~-~VlllDEidkl~~~~~~-------~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
.+.|.....+...+..+.... .|+||||+|.+.++..+ ..+..|+++++.... +. ...++
T Consensus 90 --~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~~--------~~~~~ 157 (285)
T 3h4m_A 90 --KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG--FD--------ARGDV 157 (285)
T ss_dssp --CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT--TC--------SSSSE
T ss_pred --hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC--CC--------CCCCE
Confidence 456665556666665554333 49999999999654321 124566666543210 00 12367
Q ss_pred EEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchH
Q 004834 358 IFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVR 434 (728)
Q Consensus 358 i~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R 434 (728)
+||+|||.++.+++++++ ||+ ++.++.|+.+++.+|++.++. ..++. .+..+..++....+..|
T Consensus 158 ~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~-----~~~~~------~~~~~~~l~~~~~g~~~-- 224 (285)
T 3h4m_A 158 KIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTR-----KMNLA------EDVNLEEIAKMTEGCVG-- 224 (285)
T ss_dssp EEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHT-----TSCBC------TTCCHHHHHHHCTTCCH--
T ss_pred EEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHh-----cCCCC------CcCCHHHHHHHcCCCCH--
Confidence 899999999999999999 997 799999999999999988742 11111 12224556555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004834 435 NLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 435 ~L~~~I~~l~r~a~~~~~~~ 454 (728)
+.|..+|+.|...++..
T Consensus 225 ---~~i~~l~~~a~~~a~~~ 241 (285)
T 3h4m_A 225 ---AELKAICTEAGMNAIRE 241 (285)
T ss_dssp ---HHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHHh
Confidence 77888899888877765
No 36
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.80 E-value=1.1e-18 Score=180.76 Aligned_cols=203 Identities=23% Similarity=0.317 Sum_probs=141.7
Q ss_pred ccccchHHHHHHHHHHHHhhcc---C---CCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKL---K---PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 286 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~---~---~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~ 286 (728)
++++|++.+++.+.+.+..... . ....+.+++|+||||||||++|+++|+.++.+++.++++...+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~-------- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE-------- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT--------
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH--------
Confidence 3799999999998876653211 0 1133557999999999999999999999999998888765432
Q ss_pred cccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCCC----------CHHHHHHHhcCcccccccccCCCCeeecCC
Q 004834 287 RTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRG----------DPASALLEVLDPEQNKTFNDHYLNVPFDLS 355 (728)
Q Consensus 287 ~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~~----------~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~ 355 (728)
.+.|.....+...+..+....+ ++|+||+|.+...... ...+.++..++.. . ...
T Consensus 84 -~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----~--------~~~ 149 (257)
T 1lv7_A 84 -MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF-----E--------GNE 149 (257)
T ss_dssp -SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC-----C--------SSS
T ss_pred -HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCc-----c--------cCC
Confidence 3566666666666666543334 9999999999875421 1134455555421 0 124
Q ss_pred CcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHH-HHHHHHHHccccc
Q 004834 356 KVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEA-MVKLVIQRYTREA 431 (728)
Q Consensus 356 ~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~-~l~~l~~~~~~~~ 431 (728)
++++|+|||.++.+++++++ ||+ .+.++.|+.+++.+|++.++. ... ++++ .+..++..+.+..
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~-----~~~-------l~~~~~~~~la~~~~G~~ 217 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR-----RVP-------LAPDIDAAIIARGTPGFS 217 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT-----TSC-------BCTTCCHHHHHHTCTTCC
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHh-----cCC-------CCccccHHHHHHHcCCCC
Confidence 57899999999999999998 997 799999999999999988752 111 2222 2445555554434
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 004834 432 GVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 432 G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
+ ++|.++|++|+..+...
T Consensus 218 ~-----~dl~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 218 G-----ADLANLVNEAALFAARG 235 (257)
T ss_dssp H-----HHHHHHHHHHHHHHHHT
T ss_pred H-----HHHHHHHHHHHHHHHHh
Confidence 4 67777888877766554
No 37
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.80 E-value=6.3e-19 Score=197.44 Aligned_cols=204 Identities=24% Similarity=0.321 Sum_probs=147.4
Q ss_pred ccccchHHHHHHHHHHHHhhcc------CCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKL------KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 286 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~------~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~ 286 (728)
++++|++++++.+.+.+..... .....+.+++|+||||||||++|+++|..++.+|+.++++....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~-------- 87 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVE-------- 87 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTT--------
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHH--------
Confidence 3799999999999887654211 01133457999999999999999999999999999998766433
Q ss_pred cccccCCcchHHHHHhhcCCC-CcEEEEecccccCCCCCC-----C-----HHHHHHHhcCcccccccccCCCCeeecCC
Q 004834 287 RTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRG-----D-----PASALLEVLDPEQNKTFNDHYLNVPFDLS 355 (728)
Q Consensus 287 ~~yvG~~~g~l~~~~~~a~~~-~~VlllDEidkl~~~~~~-----~-----~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~ 355 (728)
.|+|.....+...|..+... +.||||||+|.+.+.+.. + .++.|+..||. |. ...
T Consensus 88 -~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~-----~~--------~~~ 153 (476)
T 2ce7_A 88 -LFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDG-----FD--------SKE 153 (476)
T ss_dssp -CCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHH-----SC--------GGG
T ss_pred -HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhc-----cC--------CCC
Confidence 35665555666666665433 349999999999876421 1 24566666652 11 123
Q ss_pred CcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccc
Q 004834 356 KVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAG 432 (728)
Q Consensus 356 ~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G 432 (728)
++++|+|||.++.+++++++ ||+ .|.++.|+.++|.+|++.++.. ..+. ++..+..++..+.+..|
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~-----~~l~------~~v~l~~la~~t~G~sg 222 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN-----KPLA------EDVNLEIIAKRTPGFVG 222 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT-----SCBC------TTCCHHHHHHTCTTCCH
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHh-----CCCc------chhhHHHHHHhcCCCcH
Confidence 67999999999999999997 998 7999999999999999887532 1111 11125667777766676
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 004834 433 VRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 433 ~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
++|.++|++|+..+.+.
T Consensus 223 -----adL~~lv~~Aal~A~~~ 239 (476)
T 2ce7_A 223 -----ADLENLVNEAALLAARE 239 (476)
T ss_dssp -----HHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHHHHc
Confidence 78889999988877654
No 38
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=182.44 Aligned_cols=207 Identities=21% Similarity=0.274 Sum_probs=142.7
Q ss_pred hccccchHHHHHHHHHHHHhhccC-------CCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhcc
Q 004834 212 DSDHYGLVRVKQRIIEYLAVRKLK-------PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRG 284 (728)
Q Consensus 212 ~~~i~G~~~vk~~i~~~l~~~~~~-------~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g 284 (728)
..++.|++++++.+.+.+..+... .-..+.+++|+||||||||+|++++|..++.+++.++.....+
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~------ 82 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN------ 82 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS------
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh------
Confidence 457999999999998876543221 1133456999999999999999999999998888777654322
Q ss_pred CccccccCCcchHHHHHhhcC-CCCcEEEEecccccCCCCC-------CCHHHHHHHhcCcccccccccCCCCeeecCCC
Q 004834 285 HRRTYIGSMPGRLIDGLKRVG-VCNPVMLLDEIDKTGSDVR-------GDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 356 (728)
Q Consensus 285 ~~~~yvG~~~g~l~~~~~~a~-~~~~VlllDEidkl~~~~~-------~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~ 356 (728)
.|+|.....+...|..+. ....++|+||+|.+..... ....+.++..|+.++. .+.
T Consensus 83 ---~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~-------------~~~ 146 (274)
T 2x8a_A 83 ---MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA-------------RQQ 146 (274)
T ss_dssp ---STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS-------------TTC
T ss_pred ---hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc-------------cCC
Confidence 344544445555665542 2335999999999765321 1224556666654321 235
Q ss_pred cEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCcccccc-CHHHHHHHHHH--cccc
Q 004834 357 VIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQI-PEAMVKLVIQR--YTRE 430 (728)
Q Consensus 357 vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i-~d~~l~~l~~~--~~~~ 430 (728)
+++++++|.++.+|+++++ ||+ .|.++.|+.+++.+|++.++... . ...+ ++..+..++.. +.+.
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~----~-----~~~~~~~~~~~~la~~~~~~g~ 217 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNG----T-----KPPLDADVNLEAIAGDLRCDCY 217 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTT----B-----TTBBCTTCCHHHHHTCSGGGSC
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcc----c-----CCCCccccCHHHHHHhhccCCc
Confidence 6888999999999999998 998 79999999999999999875310 0 0111 12235556653 2356
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q 004834 431 AGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 431 ~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
.| ++|..+|++|++.++++
T Consensus 218 sg-----adl~~l~~~a~~~a~~~ 236 (274)
T 2x8a_A 218 TG-----ADLSALVREASICALRQ 236 (274)
T ss_dssp CH-----HHHHHHHHHHHHHHHHH
T ss_pred CH-----HHHHHHHHHHHHHHHHH
Confidence 66 89999999999998876
No 39
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.76 E-value=2.4e-20 Score=222.84 Aligned_cols=206 Identities=22% Similarity=0.337 Sum_probs=153.7
Q ss_pred hhccccchHHHHHHHHHHHHhhccCC-------CCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhc
Q 004834 211 LDSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIR 283 (728)
Q Consensus 211 L~~~i~G~~~vk~~i~~~l~~~~~~~-------~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~ 283 (728)
...+++|++++++.+.+++.....++ ..++.++||+||||||||++|+++|+.++.+++.++++...+
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~----- 549 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT----- 549 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT-----
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh-----
Confidence 34578999999999999876543322 145668999999999999999999999999999888776543
Q ss_pred cCccccccCCcchHHHHHhhcCCCCc-EEEEecccccCCCCCCC----------HHHHHHHhcCcccccccccCCCCeee
Q 004834 284 GHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRGD----------PASALLEVLDPEQNKTFNDHYLNVPF 352 (728)
Q Consensus 284 g~~~~yvG~~~g~l~~~~~~a~~~~~-VlllDEidkl~~~~~~~----------~~~~Ll~~Ld~~~~~~~~d~~~~~~~ 352 (728)
.|+|..++.+...|..+....| |+||||||.+...+.++ ..+.|++.||...
T Consensus 550 ----~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~------------- 612 (806)
T 1ypw_A 550 ----MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS------------- 612 (806)
T ss_dssp ----CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC----------------
T ss_pred ----hhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc-------------
Confidence 6889888888888877654444 99999999998765432 1467777777421
Q ss_pred cCCCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHccc
Q 004834 353 DLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 429 (728)
Q Consensus 353 d~~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~ 429 (728)
+..+++||+|||.++.+++++++ ||+ .|+|+.|+.+++.+|++.++....... .+. +..+++...+
T Consensus 613 ~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~------~~~-----l~~la~~t~g 681 (806)
T 1ypw_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK------DVD-----LEFLAKMTNG 681 (806)
T ss_dssp ---CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----------CCC-----CSCSCGGGSS
T ss_pred ccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCc------ccC-----HHHHHHhccc
Confidence 23578999999999999999999 997 899999999999999998864221110 111 2334444444
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 430 EAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 430 ~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
.+| ++|..+|+.|+..++++
T Consensus 682 ~sg-----adi~~l~~~a~~~a~~~ 701 (806)
T 1ypw_A 682 FSG-----ADLTEICQRACKLAIRE 701 (806)
T ss_dssp SCC-----HHHHHHHHHHHHHHHSC
T ss_pred cCH-----HHHHHHHHHHHHHHHHH
Confidence 556 78889999999888765
No 40
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.76 E-value=7.4e-18 Score=189.82 Aligned_cols=202 Identities=25% Similarity=0.314 Sum_probs=146.4
Q ss_pred ccccchHHHHHHHHHHHHhhcc---C---CCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKL---K---PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 286 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~---~---~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~ 286 (728)
++++|++++++.+.+.+..... . .-..+++++|+||||||||+||+++|..++.+++.++++.+.+
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~-------- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE-------- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTS--------
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHH--------
Confidence 4799999999998887654211 0 0123456999999999999999999999999999988765432
Q ss_pred cccccCCcchHHHHHhhcCC-CCcEEEEecccccCCCCCC-----C-----HHHHHHHhcCcccccccccCCCCeeecCC
Q 004834 287 RTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVRG-----D-----PASALLEVLDPEQNKTFNDHYLNVPFDLS 355 (728)
Q Consensus 287 ~~yvG~~~g~l~~~~~~a~~-~~~VlllDEidkl~~~~~~-----~-----~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~ 355 (728)
.|+|.....+...|..+.. ...++||||||.+...... + ..+.|+..|+..+. ..
T Consensus 103 -~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~-------------~~ 168 (499)
T 2dhr_A 103 -MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-------------DT 168 (499)
T ss_dssp -SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS-------------SC
T ss_pred -hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc-------------Cc
Confidence 3555555566677776653 3359999999998765421 1 13566666653221 23
Q ss_pred CcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHH-HHHHHHHHccccc
Q 004834 356 KVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEA-MVKLVIQRYTREA 431 (728)
Q Consensus 356 ~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~-~l~~l~~~~~~~~ 431 (728)
.+++++++|.++.++++|++ ||+ .|.++.|+.+++.+|++.++. .+.++++ .+..++..+.+..
T Consensus 169 ~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~------------~~~l~~dv~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 169 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR------------GKPLAEDVDLALLAKRTPGFV 236 (499)
T ss_dssp CCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS------------SSCCCCSSTTHHHHTTSCSCC
T ss_pred cEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh------------cCCCChHHHHHHHHHhcCCCC
Confidence 57899999999999999998 887 799999999999999987742 1233333 3667777777777
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 004834 432 GVRNLERNLAALARAAAVKVAE 453 (728)
Q Consensus 432 G~R~L~~~I~~l~r~a~~~~~~ 453 (728)
| ++|+++|++|+..+.+
T Consensus 237 g-----adL~~lv~~Aa~~A~~ 253 (499)
T 2dhr_A 237 G-----ADLENLLNEAALLAAR 253 (499)
T ss_dssp H-----HHHHHHHHHHHHHHTT
T ss_pred H-----HHHHHHHHHHHHHHHH
Confidence 7 7888888888776554
No 41
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.75 E-value=1.4e-17 Score=179.18 Aligned_cols=199 Identities=20% Similarity=0.259 Sum_probs=147.4
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCC
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSM 293 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~ 293 (728)
+++|++.+++.+..++..... ...+.++++|+||||||||++|+++|+.++.+++.+++.....
T Consensus 30 ~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~--------------- 93 (338)
T 3pfi_A 30 GYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK--------------- 93 (338)
T ss_dssp GCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS---------------
T ss_pred HhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc---------------
Confidence 689999999999988876532 1234557999999999999999999999999999998765321
Q ss_pred cchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccC---CCCeeecCCCcEEEEecCCCCCCC
Q 004834 294 PGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDH---YLNVPFDLSKVIFVATANRAQPIP 370 (728)
Q Consensus 294 ~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~---~~~~~~d~~~vi~I~TtN~~~~l~ 370 (728)
.+.+...+.... ...++|||||+.+.+.. ++.|++.|+.......... .....++..++++|++||....++
T Consensus 94 ~~~~~~~~~~~~-~~~vl~lDEi~~l~~~~----~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~ 168 (338)
T 3pfi_A 94 SGDLAAILTNLS-EGDILFIDEIHRLSPAI----EEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLS 168 (338)
T ss_dssp HHHHHHHHHTCC-TTCEEEEETGGGCCHHH----HHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSC
T ss_pred hhHHHHHHHhcc-CCCEEEEechhhcCHHH----HHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccC
Confidence 234444444322 35699999999998765 8999999986543221111 012334555789999999999999
Q ss_pred hhhhCCe-eEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHH
Q 004834 371 PPLLDRM-EVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALAR 445 (728)
Q Consensus 371 ~~Ll~R~-~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r 445 (728)
++|++|| .++.|++|+.+++..+++.++. .. .+.++++++..+++.+. ..+|.+.+.++.++.
T Consensus 169 ~~L~~R~~~~i~l~~~~~~e~~~il~~~~~-----~~-----~~~~~~~~~~~l~~~~~--G~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 169 NPLRDRFGMQFRLEFYKDSELALILQKAAL-----KL-----NKTCEEKAALEIAKRSR--STPRIALRLLKRVRD 232 (338)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHHH-----HT-----TCEECHHHHHHHHHTTT--TCHHHHHHHHHHHHH
T ss_pred HHHHhhcCEEeeCCCcCHHHHHHHHHHHHH-----hc-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 9999999 5899999999999999987742 22 25789999999998443 456777766665543
No 42
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.72 E-value=5.9e-19 Score=183.72 Aligned_cols=201 Identities=23% Similarity=0.313 Sum_probs=128.7
Q ss_pred ccccchHHHHHHHHHHHHhhcc------CCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKL------KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 286 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~------~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~ 286 (728)
.+++|++.+++.+.+.+..... .....+.+++|+||||||||++|+++|+.++.+++.++++...+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~-------- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE-------- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT--------
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH--------
Confidence 3688999888888876653110 01133456899999999999999999999999998887765433
Q ss_pred cccccCCcchHHHHHhhcCC-CCcEEEEecccccCCCCCC-----------CHHHHHHHhcCcccccccccCCCCeeecC
Q 004834 287 RTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVRG-----------DPASALLEVLDPEQNKTFNDHYLNVPFDL 354 (728)
Q Consensus 287 ~~yvG~~~g~l~~~~~~a~~-~~~VlllDEidkl~~~~~~-----------~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~ 354 (728)
.|.|.....+...|..+.. ...|+||||+|.+...... ..++.|+..++.. ....
T Consensus 83 -~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~------------~~~~ 149 (268)
T 2r62_A 83 -MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF------------GSEN 149 (268)
T ss_dssp -SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCS------------SCSC
T ss_pred -hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCc------------ccCC
Confidence 2334333222222322221 2359999999999765311 1123344444321 1123
Q ss_pred CCcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHccccc
Q 004834 355 SKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 431 (728)
Q Consensus 355 ~~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~ 431 (728)
.++++|+|||.++.+++++++ ||+ .+.|+.|+.+++.+|++.++.. ..+. ++..+..++....+..
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~-----~~~~------~~~~~~~la~~~~g~~ 218 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG-----VKLA------NDVNLQEVAKLTAGLA 218 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS-----SCCC------SSCCTTTTTSSSCSSC
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc-----CCCC------CccCHHHHHHHcCCCC
Confidence 457999999999999999998 896 7999999999999999887531 1111 1111334444333344
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 004834 432 GVRNLERNLAALARAAAVK 450 (728)
Q Consensus 432 G~R~L~~~I~~l~r~a~~~ 450 (728)
| ++|.++|+.|+..
T Consensus 219 g-----~dl~~l~~~a~~~ 232 (268)
T 2r62_A 219 G-----ADLANIINEAALL 232 (268)
T ss_dssp H-----HHHHHHHHHHHHT
T ss_pred H-----HHHHHHHHHHHHH
Confidence 5 6677777776654
No 43
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.72 E-value=4.1e-17 Score=168.57 Aligned_cols=202 Identities=25% Similarity=0.339 Sum_probs=134.3
Q ss_pred cccchHHHHHHHHHHHHhhcc------CCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCcc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKL------KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRR 287 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~------~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~ 287 (728)
+++|+++++..+.+....... ..-..+++++|+||||||||||++++|+.++.+++.++......
T Consensus 17 ~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~--------- 87 (254)
T 1ixz_A 17 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE--------- 87 (254)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH---------
T ss_pred HhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH---------
Confidence 678888888877765543110 01123446999999999999999999999988887776543211
Q ss_pred ccccCCcchHHHHHhhcCC-CCcEEEEecccccCCCCCC-----C-----HHHHHHHhcCcccccccccCCCCeeecCCC
Q 004834 288 TYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVRG-----D-----PASALLEVLDPEQNKTFNDHYLNVPFDLSK 356 (728)
Q Consensus 288 ~yvG~~~g~l~~~~~~a~~-~~~VlllDEidkl~~~~~~-----~-----~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~ 356 (728)
.+.|.....+...+..+.. ...++++||+|.+...... + ..+.++..|+..+. -+.
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~-------------~~~ 154 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-------------DTA 154 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT-------------TCC
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC-------------CCC
Confidence 1233333345555655542 3359999999988654321 1 13455555553221 134
Q ss_pred cEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHH-HHHHHHHHcccccc
Q 004834 357 VIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEA-MVKLVIQRYTREAG 432 (728)
Q Consensus 357 vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~-~l~~l~~~~~~~~G 432 (728)
+++++++|.++.+++++++ ||+ .+.++.|+.+++.+|++.+.. + ..++++ .+..++..+.+..|
T Consensus 155 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~-------~-----~~~~~~~~~~~la~~~~G~~~ 222 (254)
T 1ixz_A 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR-------G-----KPLAEDVDLALLAKRTPGFVG 222 (254)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT-------T-----SCBCTTCCHHHHHHTCTTCCH
T ss_pred EEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc-------C-----CCCCcccCHHHHHHHcCCCCH
Confidence 6888999999999999998 887 799999999999999987641 1 123322 26677777766666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 004834 433 VRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 433 ~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
++|.++|++|+..+.+.
T Consensus 223 -----~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 223 -----ADLENLLNEAALLAARE 239 (254)
T ss_dssp -----HHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHHHHh
Confidence 77888888887766553
No 44
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.71 E-value=1.5e-16 Score=170.83 Aligned_cols=203 Identities=22% Similarity=0.295 Sum_probs=141.3
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhc
Q 004834 204 LKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIR 283 (728)
Q Consensus 204 l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~ 283 (728)
+......+..+++|++++++.+...+.. +.+++|+||||||||++|+++|+.++.++.+++++.....+++.
T Consensus 18 ~~~~~~~~~~~i~g~~~~~~~l~~~l~~--------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 18 IKEVIDEVGKVVVGQKYMINRLLIGICT--------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HHHHHHHHTTTCCSCHHHHHHHHHHHHH--------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred HHHHHHHhccceeCcHHHHHHHHHHHHc--------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 4455667778999999999988877653 34799999999999999999999999999999987655556665
Q ss_pred cCccccccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecC-CCcEEEEe
Q 004834 284 GHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDL-SKVIFVAT 362 (728)
Q Consensus 284 g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~-~~vi~I~T 362 (728)
|... .+...+.. .+........|+||||++.+.++. ++.|++.|+..+... .+..+.. .++++|+|
T Consensus 90 g~~~--~~~~~~~~--~~~~g~l~~~vl~iDEi~~~~~~~----~~~Ll~~l~~~~~~~-----~g~~~~~~~~~~viat 156 (331)
T 2r44_A 90 GTMI--YNQHKGNF--EVKKGPVFSNFILADEVNRSPAKV----QSALLECMQEKQVTI-----GDTTYPLDNPFLVLAT 156 (331)
T ss_dssp EEEE--EETTTTEE--EEEECTTCSSEEEEETGGGSCHHH----HHHHHHHHHHSEEEE-----TTEEEECCSSCEEEEE
T ss_pred Ccee--ecCCCCce--EeccCcccccEEEEEccccCCHHH----HHHHHHHHhcCceee-----CCEEEECCCCEEEEEe
Confidence 5431 01001110 011111123699999999998766 899999998654322 1333332 25688889
Q ss_pred cCCCC-----CCChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHH------------hhcCCCccccccCHHHHHHHH
Q 004834 363 ANRAQ-----PIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVL------------DQHGLGSEFLQIPEAMVKLVI 424 (728)
Q Consensus 363 tN~~~-----~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~------------~~~~~~~~~~~i~d~~l~~l~ 424 (728)
+|+.+ .++++|++||. .+.++.|+.+++.+|++.++..... ....-...++.++++++++++
T Consensus 157 ~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~ 236 (331)
T 2r44_A 157 QNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYII 236 (331)
T ss_dssp ECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHH
T ss_pred cCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 99654 38999999998 5999999999999999887532100 000000125778999999998
Q ss_pred HHc
Q 004834 425 QRY 427 (728)
Q Consensus 425 ~~~ 427 (728)
+.+
T Consensus 237 ~~~ 239 (331)
T 2r44_A 237 ELV 239 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
No 45
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.70 E-value=1.2e-16 Score=173.66 Aligned_cols=199 Identities=19% Similarity=0.264 Sum_probs=128.4
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCC--CeEEEecCCccch----hhh-----
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR--KFIRISLGGVKDE----ADI----- 282 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~--~~~~i~~~~~~~~----s~l----- 282 (728)
+++|++.+++.+......... ...++.+++|+||||||||++|+++|+.++. +++.+++...... .+.
T Consensus 45 ~ivG~~~~~~~l~~l~~~~~~-~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEMIRE-GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAF 123 (368)
T ss_dssp TEESCHHHHHHHHHHHHHHHT-TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHH
T ss_pred hccChHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHH
Confidence 689999998886655443322 2234579999999999999999999999975 6777775442110 000
Q ss_pred -------------------------------ccCccccccCCcchHHHHHhhc-------CC---CCcEEEEecccccCC
Q 004834 283 -------------------------------RGHRRTYIGSMPGRLIDGLKRV-------GV---CNPVMLLDEIDKTGS 321 (728)
Q Consensus 283 -------------------------------~g~~~~yvG~~~g~l~~~~~~a-------~~---~~~VlllDEidkl~~ 321 (728)
.+...++.|.....+.+.+..+ +. .++|+||||+|.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~ 203 (368)
T 3uk6_A 124 RRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI 203 (368)
T ss_dssp HHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH
T ss_pred HHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh
Confidence 0011112222223333333221 10 135999999999987
Q ss_pred CCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEec-----------CCCCCCChhhhCCeeEEEcCCCCHHHH
Q 004834 322 DVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA-----------NRAQPIPPPLLDRMEVIELPGYTPEEK 390 (728)
Q Consensus 322 ~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~Tt-----------N~~~~l~~~Ll~R~~vI~~~~~t~ee~ 390 (728)
.. ++.|+..++... ..+++++|. |.+..++++|++||.++.|++|+.+++
T Consensus 204 ~~----~~~L~~~le~~~---------------~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~ 264 (368)
T 3uk6_A 204 ES----FSFLNRALESDM---------------APVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDT 264 (368)
T ss_dssp HH----HHHHHHHTTCTT---------------CCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHH
T ss_pred HH----HHHHHHHhhCcC---------------CCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHH
Confidence 65 889999987421 122333333 456789999999999999999999999
Q ss_pred HHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHH
Q 004834 391 LRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAAL 443 (728)
Q Consensus 391 ~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l 443 (728)
.+|++.++. .. .+.++++++..+++...+ .++|.+.+.++..
T Consensus 265 ~~il~~~~~-----~~-----~~~~~~~~l~~l~~~~~~-G~~r~~~~ll~~a 306 (368)
T 3uk6_A 265 KQILRIRCE-----EE-----DVEMSEDAYTVLTRIGLE-TSLRYAIQLITAA 306 (368)
T ss_dssp HHHHHHHHH-----HT-----TCCBCHHHHHHHHHHHHH-SCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----Hc-----CCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHH
Confidence 999988753 12 357899999999885432 4455554444433
No 46
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.70 E-value=2.4e-16 Score=165.18 Aligned_cols=203 Identities=25% Similarity=0.325 Sum_probs=133.6
Q ss_pred ccccchHHHHHHHHHHHHhhcc------CCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKL------KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 286 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~------~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~ 286 (728)
++++|++++++.+.+....... ..-..+++++|+||||||||||+++++..++.+++.++......
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~-------- 111 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE-------- 111 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH--------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH--------
Confidence 3688999888888765543210 01123345999999999999999999999988888776543211
Q ss_pred cccccCCcchHHHHHhhcC-CCCcEEEEecccccCCCCCC-----C-----HHHHHHHhcCcccccccccCCCCeeecCC
Q 004834 287 RTYIGSMPGRLIDGLKRVG-VCNPVMLLDEIDKTGSDVRG-----D-----PASALLEVLDPEQNKTFNDHYLNVPFDLS 355 (728)
Q Consensus 287 ~~yvG~~~g~l~~~~~~a~-~~~~VlllDEidkl~~~~~~-----~-----~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~ 355 (728)
.+.+.....+...+..+. ....++++||+|.+...... + ..+.++..|+..+. -.
T Consensus 112 -~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~-------------~~ 177 (278)
T 1iy2_A 112 -MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-------------DT 177 (278)
T ss_dssp -STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT-------------TC
T ss_pred -HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC-------------CC
Confidence 122322333444455443 22359999999988654311 0 12345555553221 13
Q ss_pred CcEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHH-HHHHHHHHccccc
Q 004834 356 KVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEA-MVKLVIQRYTREA 431 (728)
Q Consensus 356 ~vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~-~l~~l~~~~~~~~ 431 (728)
.+++++++|.++.+++++++ ||+ .|.|+.|+.+++.+|++.++. . ..++++ .+..++..+.+..
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~-----~-------~~~~~~~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR-----G-------KPLAEDVDLALLAKRTPGFV 245 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT-----T-------SCBCTTCCHHHHHHTCTTCC
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc-----c-------CCCCcccCHHHHHHHcCCCC
Confidence 46888999999999999998 887 799999999999999987642 1 223332 3666777666666
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 004834 432 GVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 432 G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
| ++|.++|++|+..+.+.
T Consensus 246 ~-----~dl~~l~~~a~~~a~~~ 263 (278)
T 1iy2_A 246 G-----ADLENLLNEAALLAARE 263 (278)
T ss_dssp H-----HHHHHHHHHHHHHHHHT
T ss_pred H-----HHHHHHHHHHHHHHHHh
Confidence 6 77888888877765543
No 47
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.69 E-value=2.6e-16 Score=167.93 Aligned_cols=198 Identities=25% Similarity=0.322 Sum_probs=143.3
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCC
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSM 293 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~ 293 (728)
+++|++.+++.+..++...... .....+++|+||||||||++|+++++.++.+++.++++.....
T Consensus 13 ~~ig~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~-------------- 77 (324)
T 1hqc_A 13 EYIGQERLKQKLRVYLEAAKAR-KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP-------------- 77 (324)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHH-CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH--------------
T ss_pred HhhCHHHHHHHHHHHHHHHHcc-CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh--------------
Confidence 6899999999988877643221 1234579999999999999999999999999988887664332
Q ss_pred cchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCC---CCeeecCCCcEEEEecCCCCCCC
Q 004834 294 PGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHY---LNVPFDLSKVIFVATANRAQPIP 370 (728)
Q Consensus 294 ~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~---~~~~~d~~~vi~I~TtN~~~~l~ 370 (728)
+.+...+........++||||++.+.... ++.|+.+++........+.. .....+..++.+|++||....++
T Consensus 78 -~~l~~~l~~~~~~~~~l~lDEi~~l~~~~----~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~ 152 (324)
T 1hqc_A 78 -GDLAAILANSLEEGDILFIDEIHRLSRQA----EEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLIT 152 (324)
T ss_dssp -HHHHHHHTTTCCTTCEEEETTTTSCCHHH----HHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCS
T ss_pred -HHHHHHHHHhccCCCEEEEECCcccccch----HHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCC
Confidence 23344444422345699999999998655 78899998865432221111 12233445789999999999999
Q ss_pred hhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHH
Q 004834 371 PPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAAL 443 (728)
Q Consensus 371 ~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l 443 (728)
++|++||. ++.+++|+.+++.+++..++. .. .+.++++++..++..+. ...|.+.+.++.+
T Consensus 153 ~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~-----~~-----~~~~~~~~~~~l~~~~~--G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 153 APLLSRFGIVEHLEYYTPEELAQGVMRDAR-----LL-----GVRITEEAALEIGRRSR--GTMRVAKRLFRRV 214 (324)
T ss_dssp CSTTTTCSCEEECCCCCHHHHHHHHHHHHH-----TT-----TCCCCHHHHHHHHHHSC--SCHHHHHHHHHHH
T ss_pred HHHHhcccEEEecCCCCHHHHHHHHHHHHH-----hc-----CCCCCHHHHHHHHHHcc--CCHHHHHHHHHHH
Confidence 99999995 899999999999988887642 22 35689999999988653 3455555555444
No 48
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.68 E-value=1.8e-16 Score=176.96 Aligned_cols=187 Identities=19% Similarity=0.295 Sum_probs=130.7
Q ss_pred cccchHHHH---HHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccc
Q 004834 214 DHYGLVRVK---QRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYI 290 (728)
Q Consensus 214 ~i~G~~~vk---~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yv 290 (728)
+++|++.++ +.+...+... ..++++|+||||||||++|++||+.++.+|+.++.... ...++.
T Consensus 27 ~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-~~~~ir------- 92 (447)
T 3pvs_A 27 QYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-GVKEIR------- 92 (447)
T ss_dssp TCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-CHHHHH-------
T ss_pred HhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-CHHHHH-------
Confidence 689999988 6677666543 23689999999999999999999999999999886542 111110
Q ss_pred cCCcchHHHHHhh-cCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEec--CCCC
Q 004834 291 GSMPGRLIDGLKR-VGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA--NRAQ 367 (728)
Q Consensus 291 G~~~g~l~~~~~~-a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~Tt--N~~~ 367 (728)
+.+..+... ......|+||||||.+.... ++.|+..|+. ..++||++| |...
T Consensus 93 ----~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~----q~~LL~~le~-----------------~~v~lI~att~n~~~ 147 (447)
T 3pvs_A 93 ----EAIERARQNRNAGRRTILFVDEVHRFNKSQ----QDAFLPHIED-----------------GTITFIGATTENPSF 147 (447)
T ss_dssp ----HHHHHHHHHHHTTCCEEEEEETTTCC----------CCHHHHHT-----------------TSCEEEEEESSCGGG
T ss_pred ----HHHHHHHHhhhcCCCcEEEEeChhhhCHHH----HHHHHHHHhc-----------------CceEEEecCCCCccc
Confidence 111111111 11234699999999998765 7888888874 124566644 6666
Q ss_pred CCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHH
Q 004834 368 PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 368 ~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
.++++|++||.++.|++|+.+++..++++.+... ..++....+.+++++++.+++.+ ..++|.+.+.++.++
T Consensus 148 ~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~---~~~~~~~~~~i~~~al~~L~~~~--~Gd~R~lln~Le~a~ 219 (447)
T 3pvs_A 148 ELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK---TRGYGGQDIVLPDETRRAIAELV--NGDARRALNTLEMMA 219 (447)
T ss_dssp SSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCT---TTSSTTSSEECCHHHHHHHHHHH--CSCHHHHHHHHHHHH
T ss_pred ccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHH---hhhhccccCcCCHHHHHHHHHHC--CCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999886321 12233356789999999999874 356777777776665
No 49
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.67 E-value=2.1e-16 Score=169.17 Aligned_cols=187 Identities=18% Similarity=0.257 Sum_probs=134.9
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCC
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSM 293 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~ 293 (728)
+++|++++++.+..++... ..+..++++||||||||++|+++|+.++.+++.++++... ...+.
T Consensus 27 ~ivg~~~~~~~l~~~l~~~-----~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-~~~i~---------- 90 (324)
T 3u61_B 27 ECILPAFDKETFKSITSKG-----KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-IDFVR---------- 90 (324)
T ss_dssp TSCCCHHHHHHHHHHHHTT-----CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-HHHHH----------
T ss_pred HHhCcHHHHHHHHHHHHcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-HHHHH----------
Confidence 6899999999998887622 3345678889999999999999999999999988865522 11111
Q ss_pred cchHHHHHhhcCC--CCcEEEEecccccC-CCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCC
Q 004834 294 PGRLIDGLKRVGV--CNPVMLLDEIDKTG-SDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIP 370 (728)
Q Consensus 294 ~g~l~~~~~~a~~--~~~VlllDEidkl~-~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~ 370 (728)
..+.+.....+. ...|+||||+|.+. .+. ++.|+..++... .++.||+|+|....++
T Consensus 91 -~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~----~~~L~~~le~~~---------------~~~~iI~~~n~~~~l~ 150 (324)
T 3u61_B 91 -GPLTNFASAASFDGRQKVIVIDEFDRSGLAES----QRHLRSFMEAYS---------------SNCSIIITANNIDGII 150 (324)
T ss_dssp -THHHHHHHBCCCSSCEEEEEEESCCCGGGHHH----HHHHHHHHHHHG---------------GGCEEEEEESSGGGSC
T ss_pred -HHHHHHHhhcccCCCCeEEEEECCcccCcHHH----HHHHHHHHHhCC---------------CCcEEEEEeCCccccC
Confidence 112222222221 23499999999997 554 788999887421 3468899999999999
Q ss_pred hhhhCCeeEEEcCCCCHHHHHHHHHHhhc--hHHHhhcCCCccccccCH-HHHHHHHHHcccccchHHHHHHHHHH
Q 004834 371 PPLLDRMEVIELPGYTPEEKLRIAMRHLI--PRVLDQHGLGSEFLQIPE-AMVKLVIQRYTREAGVRNLERNLAAL 443 (728)
Q Consensus 371 ~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~--~~~~~~~~~~~~~~~i~d-~~l~~l~~~~~~~~G~R~L~~~I~~l 443 (728)
++|++||.++.|++|+.+++.+|+...+. ....... ++.+++ +++..+++.+. .++|.+.+.++..
T Consensus 151 ~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~--gd~R~a~~~L~~~ 219 (324)
T 3u61_B 151 KPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHE-----GIAIADMKVVAALVKKNF--PDFRKTIGELDSY 219 (324)
T ss_dssp TTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH-----TCCBSCHHHHHHHHHHTC--SCTTHHHHHHHHH
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHc-----CCCCCcHHHHHHHHHhCC--CCHHHHHHHHHHH
Confidence 99999999999999999999888776542 2223333 367888 99999998654 4556655554443
No 50
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.66 E-value=4.2e-16 Score=161.95 Aligned_cols=213 Identities=18% Similarity=0.253 Sum_probs=139.0
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCccc---hhhhccCcc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKD---EADIRGHRR 287 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~~---~s~l~g~~~ 287 (728)
+++|++...+.+.+.+.... ..+.+++|+||||||||++|+++++.+. .+++.++++.... .+.+.|+.+
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~----~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~ 82 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLA----PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEA 82 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHT----TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC-
T ss_pred cceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcc
Confidence 47888888888877665432 2245789999999999999999999885 5799999887533 234555432
Q ss_pred c-cccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC
Q 004834 288 T-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA 366 (728)
Q Consensus 288 ~-yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~ 366 (728)
+ |.|.... ....+..+ .++++|||||+.++++. ++.|+++|+..+.. ... +......++.+|+|||..
T Consensus 83 ~~~~g~~~~-~~~~l~~a--~~~~l~lDEi~~l~~~~----q~~Ll~~l~~~~~~---~~g-~~~~~~~~~~iI~atn~~ 151 (265)
T 2bjv_A 83 GAFTGAQKR-HPGRFERA--DGGTLFLDELATAPMMV----QEKLLRVIEYGELE---RVG-GSQPLQVNVRLVCATNAD 151 (265)
T ss_dssp --------C-CCCHHHHT--TTSEEEEESGGGSCHHH----HHHHHHHHHHCEEC---CCC-C--CEECCCEEEEEESSC
T ss_pred ccccccccc-ccchhhhc--CCcEEEEechHhcCHHH----HHHHHHHHHhCCee---cCC-CcccccCCeEEEEecCcC
Confidence 2 2232210 01122222 24699999999998765 89999999864321 111 111112356889999985
Q ss_pred -------CCCChhhhCCee--EEEcCCCCH--HHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHH
Q 004834 367 -------QPIPPPLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 435 (728)
Q Consensus 367 -------~~l~~~Ll~R~~--vI~~~~~t~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~ 435 (728)
..++++|++||. .|.+|++.. ++...+++.++. +.....+.. ....++++++..+.. |.+..++|.
T Consensus 152 ~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~-~~~~~~~~~-~~~~~~~~a~~~L~~-~~~~gn~re 228 (265)
T 2bjv_A 152 LPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAI-QMCREIKLP-LFPGFTERARETLLN-YRWPGNIRE 228 (265)
T ss_dssp HHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHH-HHHHHTTCS-SCCCBCHHHHHHHHH-SCCTTHHHH
T ss_pred HHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHH-HHHHHhCCC-cccCcCHHHHHHHHh-CCCCCCHHH
Confidence 368899999995 488888876 667777776653 333334431 013689999999875 555678899
Q ss_pred HHHHHHHHH
Q 004834 436 LERNLAALA 444 (728)
Q Consensus 436 L~~~I~~l~ 444 (728)
|++.++.++
T Consensus 229 L~~~l~~~~ 237 (265)
T 2bjv_A 229 LKNVVERSV 237 (265)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888776
No 51
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=99.66 E-value=2.1e-16 Score=135.81 Aligned_cols=93 Identities=37% Similarity=0.609 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHH-HhhhhcCC
Q 004834 383 PGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAE-QEQEQALP 461 (728)
Q Consensus 383 ~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~a~~~~~~-~~~~~~~~ 461 (728)
++||.+|+.+|+++||+|++++++|+....+.++++++..+++.||+++|||+|+|.|.++||+++.+++. + .
T Consensus 1 sGYt~~EK~~IAk~~LiPkql~~~GL~~~~~~i~d~al~~iI~~YTREaGVRnLer~i~~i~RK~a~~i~~~~---~--- 74 (94)
T 1qzm_A 1 SGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDK---S--- 74 (94)
T ss_dssp CCCCHHHHHHHHHHTHHHHHHHHTTCCTTTEEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTCT---T---
T ss_pred CCCCHHHHHHHHHHhccHHHHHHhCCChhhceECHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHcC---C---
Confidence 58999999999999999999999999999999999999999999999999999999999999999999875 2 1
Q ss_pred CCccccccCCccccccccCCCceeEeeccCCCcccccccccccCCceeechhhhhhhcCCCcc
Q 004834 462 SSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRITSPLVVDEAMLEKVLGPPRF 524 (728)
Q Consensus 462 ~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~It~~~L~~~Lg~~~~ 524 (728)
..++.||.++|++|||+|+|
T Consensus 75 -------------------------------------------~~~v~v~~~~l~~~LG~~~f 94 (94)
T 1qzm_A 75 -------------------------------------------LKHIEINGDNLHDYLGVQRF 94 (94)
T ss_dssp -------------------------------------------CCCEEECTTTTHHHHCSCCC
T ss_pred -------------------------------------------CCCeeECHHHHHHHcCCCCC
Confidence 13478999999999999987
No 52
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.66 E-value=5.4e-16 Score=164.86 Aligned_cols=213 Identities=18% Similarity=0.309 Sum_probs=146.0
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccc---hhhhccCc
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKD---EADIRGHR 286 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~---~s~l~g~~ 286 (728)
.+++|.+...+.+.+.+.... ....+++|+||||||||++|++++... +.+|+.++|+.... .+++.|+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~ 77 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHE 77 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCC
T ss_pred CCcEECCHHHHHHHHHHHHHh----CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCcc
Confidence 357888888888887775442 234579999999999999999999987 46899999987643 45667765
Q ss_pred cc-cccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCC
Q 004834 287 RT-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR 365 (728)
Q Consensus 287 ~~-yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~ 365 (728)
++ |.|.... ....+..+. ++++|||||+.+..+. +..|+++|+......... ..+. ..++.+|+|||.
T Consensus 78 ~g~~tg~~~~-~~g~~~~a~--~g~L~LDEi~~l~~~~----q~~Ll~~l~~~~~~~~g~---~~~~-~~~~riI~atn~ 146 (304)
T 1ojl_A 78 KGAFTGADKR-REGRFVEAD--GGTLFLDEIGDISPLM----QVRLLRAIQEREVQRVGS---NQTI-SVDVRLIAATHR 146 (304)
T ss_dssp SSCCC---CC-CCCHHHHHT--TSEEEEESCTTCCHHH----HHHHHHHHHSSBCCBTTB---CCCC-BCCCEEEEEESS
T ss_pred ccccCchhhh-hcCHHHhcC--CCEEEEeccccCCHHH----HHHHHHHHhcCEeeecCC---cccc-cCCeEEEEecCc
Confidence 42 3333221 111222222 4699999999998765 899999998643221111 1111 235678899998
Q ss_pred C-------CCCChhhhCCee--EEEcCCCC--HHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchH
Q 004834 366 A-------QPIPPPLLDRME--VIELPGYT--PEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVR 434 (728)
Q Consensus 366 ~-------~~l~~~Ll~R~~--vI~~~~~t--~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R 434 (728)
. ..|++.|.+||. .|.+|++. .++...++..++ .+....++. ....++++++..+.. |.+..++|
T Consensus 147 ~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l-~~~~~~~~~--~~~~~s~~a~~~L~~-~~wpGnvR 222 (304)
T 1ojl_A 147 DLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFL-RRFAERNRK--VVKGFTPQAMDLLIH-YDWPGNIR 222 (304)
T ss_dssp CHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHH-HHHHHHTTC--CCCCBCHHHHHHHHH-CCCSSHHH
T ss_pred cHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHH-HHHHHHhcc--CccCCCHHHHHHHHc-CCCCCCHH
Confidence 6 368899999995 37788887 466777777665 333344432 246799999998876 66667888
Q ss_pred HHHHHHHHHH
Q 004834 435 NLERNLAALA 444 (728)
Q Consensus 435 ~L~~~I~~l~ 444 (728)
.|++.++..+
T Consensus 223 eL~~~l~~~~ 232 (304)
T 1ojl_A 223 ELENAIERAV 232 (304)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887766
No 53
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.66 E-value=1.6e-16 Score=165.80 Aligned_cols=195 Identities=18% Similarity=0.189 Sum_probs=125.1
Q ss_pred hccccchHHHHHHHHHH----HHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCcc
Q 004834 212 DSDHYGLVRVKQRIIEY----LAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRR 287 (728)
Q Consensus 212 ~~~i~G~~~vk~~i~~~----l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~ 287 (728)
...++|++...+.+... ..........++.+++|+||||||||++|+++|+.++.+++.++++.
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~------------ 99 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD------------ 99 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG------------
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH------------
Confidence 34567776665555552 21111112345568999999999999999999999999999987654
Q ss_pred ccccCCc----chHHHHHhhcC-CCCcEEEEecccccCCCCC------CCHHHHHHHhcCcccccccccCCCCeeecCCC
Q 004834 288 TYIGSMP----GRLIDGLKRVG-VCNPVMLLDEIDKTGSDVR------GDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 356 (728)
Q Consensus 288 ~yvG~~~----g~l~~~~~~a~-~~~~VlllDEidkl~~~~~------~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~ 356 (728)
.+.|... +.+...+..+. ....++||||+|.+..... ....+.|+..++.. .-...+
T Consensus 100 ~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~------------~~~~~~ 167 (272)
T 1d2n_A 100 KMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKA------------PPQGRK 167 (272)
T ss_dssp GCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCC------------CSTTCE
T ss_pred HhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCc------------cCCCCC
Confidence 2233322 23444454432 2345999999999843321 11134444444421 111245
Q ss_pred cEEEEecCCCCCCCh-hhhCCee-EEEcCCCCH-HHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcc---cc
Q 004834 357 VIFVATANRAQPIPP-PLLDRME-VIELPGYTP-EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT---RE 430 (728)
Q Consensus 357 vi~I~TtN~~~~l~~-~Ll~R~~-vI~~~~~t~-ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~---~~ 430 (728)
+++|+|||.++.+++ .+++||. .|.+|+++. ++...++... ..++++.+..+++... ..
T Consensus 168 ~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~---------------~~~~~~~~~~l~~~~~g~~~~ 232 (272)
T 1d2n_A 168 LLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELL---------------GNFKDKERTTIAQQVKGKKVW 232 (272)
T ss_dssp EEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH---------------TCSCHHHHHHHHHHHTTSEEE
T ss_pred EEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhc---------------CCCCHHHHHHHHHHhcCCCcc
Confidence 689999999988877 7889986 799999887 5555555432 2467888888887443 35
Q ss_pred cchHHHHHHHHHHHH
Q 004834 431 AGVRNLERNLAALAR 445 (728)
Q Consensus 431 ~G~R~L~~~I~~l~r 445 (728)
.++|.+.+.++....
T Consensus 233 g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 233 IGIKKLLMLIEMSLQ 247 (272)
T ss_dssp ECHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHhh
Confidence 578887777766543
No 54
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=99.65 E-value=1.3e-15 Score=157.52 Aligned_cols=121 Identities=23% Similarity=0.347 Sum_probs=112.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHccCChhHHHHHHHhcCCCCHHHHHHhhhccCHHHHHHHHHHHHH
Q 004834 12 DPDFIALSRQFKATAMELISVLEQKQKTGGRTKVLLETVPIHKLADIFVASFEISFEEQLVMLDSVDLKVRLSKATELVD 91 (728)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~lLd~~~~~~r~~~~~~~l~ 91 (728)
+.+.+++.+.+++.|.+|+...+ ..+.+....+.+++||+.|+|++|++++++++++|++|++.+...|++..+..|+
T Consensus 131 ~~e~~al~~~l~~~~~~~~~l~~--~~~~e~~~~~~~~~dp~~Lad~ia~~l~l~~~eKQ~LLe~~d~~~Rl~~l~~lL~ 208 (252)
T 3ljc_A 131 EREQEVLVRTAISQFEGYIKLNK--KIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMME 208 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--SSCHHHHHHTTSCCCHHHHHHHHHHTSCCCHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhcc--cCCHHHHHHHHccCCHHHHHHHHHHhCCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 35789999999999999998763 3456677778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCC
Q 004834 92 RHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDN 134 (728)
Q Consensus 92 ~~~~~~~~e~~~~~~~~~~~~~~~r~~~l~eql~~i~~el~~~ 134 (728)
++++.++++++|.++++++++++||+|||||||++||+|||+.
T Consensus 209 ~e~e~~~l~~~I~~~v~~~~~k~Qrey~LrEQlk~IqkELGe~ 251 (252)
T 3ljc_A 209 SEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEM 251 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999964
No 55
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.65 E-value=3.5e-16 Score=176.42 Aligned_cols=207 Identities=16% Similarity=0.181 Sum_probs=133.4
Q ss_pred hcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCC--CeEEEecCCccch
Q 004834 202 LDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR--KFIRISLGGVKDE 279 (728)
Q Consensus 202 ~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~--~~~~i~~~~~~~~ 279 (728)
..+..+...+...++|++++++.+...+.. +.++||+||||||||++|+++|..++. +|..+.+. +.++
T Consensus 11 ~~~~~l~~~l~~~ivGq~~~i~~l~~al~~--------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~-~~t~ 81 (500)
T 3nbx_X 11 ERISRLSSSLEKGLYERSHAIRLCLLAALS--------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTR-FSTP 81 (500)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHHHHHH--------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCT-TCCH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHh-cCCH
Confidence 345667788889999999999988776642 358999999999999999999999854 44444443 2456
Q ss_pred hhhccCccccccCCcchHHHHHhhcCC-CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcE
Q 004834 280 ADIRGHRRTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 358 (728)
Q Consensus 280 s~l~g~~~~yvG~~~g~l~~~~~~a~~-~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi 358 (728)
+++.|....+.....|.+.. +..... ..+|+|||||+++.++. ++.|+++|++++... .|........+
T Consensus 82 ~dL~G~~~~~~~~~~g~~~~-~~~g~l~~~~IL~IDEI~r~~~~~----q~~LL~~lee~~v~i-----~G~~~~~~~~~ 151 (500)
T 3nbx_X 82 EEVFGPLSIQALKDEGRYER-LTSGYLPEAEIVFLDEIWKAGPAI----LNTLLTAINERQFRN-----GAHVEKIPMRL 151 (500)
T ss_dssp HHHHCCBC----------CB-CCTTSGGGCSEEEEESGGGCCHHH----HHHHHHHHHSSEEEC-----SSSEEECCCCE
T ss_pred HHhcCcccHHHHhhchhHHh-hhccCCCcceeeeHHhHhhhcHHH----HHHHHHHHHHHhccC-----CCCcCCcchhh
Confidence 77776432111000111110 111110 24599999999988776 899999998654322 23344444446
Q ss_pred EEEecCCCC---CCChhhhCCee-EEEcCCCCH-HHHHHHHHHhhch-------------HHHhhcCCCccccccCHHHH
Q 004834 359 FVATANRAQ---PIPPPLLDRME-VIELPGYTP-EEKLRIAMRHLIP-------------RVLDQHGLGSEFLQIPEAMV 420 (728)
Q Consensus 359 ~I~TtN~~~---~l~~~Ll~R~~-vI~~~~~t~-ee~~~Il~~~l~~-------------~~~~~~~~~~~~~~i~d~~l 420 (728)
+|+|||... .+.+++++||. .+.+++|+. +++..|++.+... ..+....-....+.++++++
T Consensus 152 iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~ 231 (500)
T 3nbx_X 152 LVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVF 231 (500)
T ss_dssp EEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHH
T ss_pred hhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHH
Confidence 677888643 35679999997 599999987 6788888765310 00000000012477899999
Q ss_pred HHHHHHc
Q 004834 421 KLVIQRY 427 (728)
Q Consensus 421 ~~l~~~~ 427 (728)
+++++.+
T Consensus 232 e~i~~l~ 238 (500)
T 3nbx_X 232 ELIFMLR 238 (500)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 56
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.64 E-value=2e-15 Score=169.47 Aligned_cols=63 Identities=29% Similarity=0.375 Sum_probs=50.6
Q ss_pred hccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC--CCeEEEecCC
Q 004834 212 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG--RKFIRISLGG 275 (728)
Q Consensus 212 ~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~--~~~~~i~~~~ 275 (728)
.++++|++++++.+..++..... ...++.++||+||||||||++|+++|+.++ .+|+.++++.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~ 100 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKS-KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSE 100 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHT-TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGG
T ss_pred hhhccCHHHHHHHHHHHHHHHHh-CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHH
Confidence 35799999999988877654332 234567899999999999999999999998 7788777654
No 57
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.2e-15 Score=162.09 Aligned_cols=213 Identities=12% Similarity=0.033 Sum_probs=136.5
Q ss_pred ccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC----------CCeEEEecCCccchh----
Q 004834 215 HYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG----------RKFIRISLGGVKDEA---- 280 (728)
Q Consensus 215 i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~----------~~~~~i~~~~~~~~s---- 280 (728)
+.|.++-.+.+..++..... ..++++++|+||||||||++++.+++.+. ..++.+++....+..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 45677777777776654432 35678999999999999999999999983 245667766654432
Q ss_pred ----hhccCccccccCCcchHHHHHhhc---CCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeec
Q 004834 281 ----DIRGHRRTYIGSMPGRLIDGLKRV---GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD 353 (728)
Q Consensus 281 ----~l~g~~~~yvG~~~g~l~~~~~~a---~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d 353 (728)
++.|+... .|.....+...|... .....|++|||+|.+. . ++.|+.+++..+ .+
T Consensus 100 ~I~~~L~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~----q~~L~~l~~~~~------------~~ 160 (318)
T 3te6_A 100 KIWFAISKENLC-GDISLEALNFYITNVPKAKKRKTLILIQNPENLL--S----EKILQYFEKWIS------------SK 160 (318)
T ss_dssp HHHHHHSCCC---CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--C----THHHHHHHHHHH------------CS
T ss_pred HHHHHhcCCCCC-chHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--c----chHHHHHHhccc------------cc
Confidence 34454322 122233455555542 2223499999999998 2 577877775321 13
Q ss_pred CCCcEEEEecCCCCC----CChhhhCCe--eEEEcCCCCHHHHHHHHHHhhchHHHhh----------------------
Q 004834 354 LSKVIFVATANRAQP----IPPPLLDRM--EVIELPGYTPEEKLRIAMRHLIPRVLDQ---------------------- 405 (728)
Q Consensus 354 ~~~vi~I~TtN~~~~----l~~~Ll~R~--~vI~~~~~t~ee~~~Il~~~l~~~~~~~---------------------- 405 (728)
.+++++|+++|..+. +++++++|| .+|.|++|+.+++.+|++..+.......
T Consensus 161 ~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 240 (318)
T 3te6_A 161 NSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQ 240 (318)
T ss_dssp SCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC------
T ss_pred CCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 457899999999863 455667888 4799999999999999999874311000
Q ss_pred ---cCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHH
Q 004834 406 ---HGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKV 451 (728)
Q Consensus 406 ---~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~a~~~~ 451 (728)
.++.+..+.+++++++.+++......| ++++.| .+||.|+..+
T Consensus 241 ~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G--D~R~Al-~ilr~A~~~a 286 (318)
T 3te6_A 241 KIPDNVIVINHKINNKITQLIAKNVANVSG--STEKAF-KICEAAVEIS 286 (318)
T ss_dssp --CTTEEEECEECCHHHHHHHHHHHHHHHC--SHHHHH-HHHHHHHHHH
T ss_pred cccccccccccccCHHHHHHHHHHHHhhCC--hHHHHH-HHHHHHHHHH
Confidence 011112346899999999985444333 233333 4556555433
No 58
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.63 E-value=3e-15 Score=149.26 Aligned_cols=183 Identities=23% Similarity=0.306 Sum_probs=129.4
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC-----CCeEEEecCCccchhhhccCccc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG-----RKFIRISLGGVKDEADIRGHRRT 288 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~-----~~~~~i~~~~~~~~s~l~g~~~~ 288 (728)
+++|++.+++.+..++... ..++++|+||||||||++++++++.+. ..++.++++.......+
T Consensus 18 ~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 85 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVV------ 85 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHH------
T ss_pred HHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHH------
Confidence 6889999999998887532 234599999999999999999999862 34566665442221111
Q ss_pred cccCCcchHHHHHhhc---CCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCC
Q 004834 289 YIGSMPGRLIDGLKRV---GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR 365 (728)
Q Consensus 289 yvG~~~g~l~~~~~~a---~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~ 365 (728)
...+....... .....|++|||++.+.+.. ++.|+++++.. ..++.+|+|+|.
T Consensus 86 -----~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~----~~~l~~~l~~~---------------~~~~~~i~~~~~ 141 (226)
T 2chg_A 86 -----RHKIKEFARTAPIGGAPFKIIFLDEADALTADA----QAALRRTMEMY---------------SKSCRFILSCNY 141 (226)
T ss_dssp -----HHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHH----HHHHHHHHHHT---------------TTTEEEEEEESC
T ss_pred -----HHHHHHHhcccCCCccCceEEEEeChhhcCHHH----HHHHHHHHHhc---------------CCCCeEEEEeCC
Confidence 01111222211 1234599999999997654 78888888642 134678899999
Q ss_pred CCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHH
Q 004834 366 AQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 366 ~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
...+++++.+||..+.|++++.++..+++..++. ..+ ..++++++..+++.+. ...|.+.+.++.++
T Consensus 142 ~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~-----~~~-----~~~~~~~~~~l~~~~~--g~~r~l~~~l~~~~ 208 (226)
T 2chg_A 142 VSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE-----KEG-----VKITEDGLEALIYISG--GDFRKAINALQGAA 208 (226)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH-----HHT-----CCBCHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred hhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHH-----HcC-----CCCCHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 9999999999999999999999999998887642 222 4689999999987553 45566666555554
No 59
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.62 E-value=2.3e-15 Score=159.74 Aligned_cols=196 Identities=22% Similarity=0.277 Sum_probs=135.5
Q ss_pred CCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC-----
Q 004834 191 LPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG----- 265 (728)
Q Consensus 191 iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~----- 265 (728)
.||.....+..++ +++|++.+++.+..++.. ...++++|+||||||||++|+++++.+.
T Consensus 5 ~~~~~k~~p~~~~----------~~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~ 68 (319)
T 2chq_A 5 EIWVEKYRPRTLD----------EVVGQDEVIQRLKGYVER------KNIPHLLFSGPPGTGKTATAIALARDLFGENWR 68 (319)
T ss_dssp -CTTTTTSCSSGG----------GSCSCHHHHHHHHTTTTT------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHhcCCCCHH----------HHhCCHHHHHHHHHHHhC------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCccc
Confidence 4787665553332 689999999888776532 2334599999999999999999999872
Q ss_pred CCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcC---CCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccc
Q 004834 266 RKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVG---VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKT 342 (728)
Q Consensus 266 ~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~---~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~ 342 (728)
.+++.++++..... ......+.......+ ....|++|||+|.+.... ++.|+..++..
T Consensus 69 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~----~~~L~~~le~~---- 129 (319)
T 2chq_A 69 DNFIEMNASDERGI-----------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADA----QAALRRTMEMY---- 129 (319)
T ss_dssp HHCEEEETTSTTCT-----------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHH----HHTTGGGTSSS----
T ss_pred CCeEEEeCccccCh-----------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHH----HHHHHHHHHhc----
Confidence 34566665542111 111112222222222 123599999999997654 67788887631
Q ss_pred cccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHH
Q 004834 343 FNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKL 422 (728)
Q Consensus 343 ~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~ 422 (728)
..++.||+++|....+.+++.+||.++.|++++.++..+++...+ ... ++.++++++..
T Consensus 130 -----------~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~-----~~~-----~~~i~~~~l~~ 188 (319)
T 2chq_A 130 -----------SKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEIC-----EKE-----GVKITEDGLEA 188 (319)
T ss_dssp -----------SSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHH-----HTT-----CCCBCHHHHHH
T ss_pred -----------CCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHH
Confidence 245688899999999999999999999999999999998887764 222 35789999999
Q ss_pred HHHHcccccchHHHHHHHHHHH
Q 004834 423 VIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 423 l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
++..+. ..+|.+.+.++.++
T Consensus 189 l~~~~~--G~~r~~~~~l~~~~ 208 (319)
T 2chq_A 189 LIYISG--GDFRKAINALQGAA 208 (319)
T ss_dssp HHHTTT--TCHHHHHHHHHHHH
T ss_pred HHHHcC--CCHHHHHHHHHHHH
Confidence 996543 45666555555443
No 60
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.62 E-value=3.5e-15 Score=167.96 Aligned_cols=186 Identities=20% Similarity=0.305 Sum_probs=122.9
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh----------CCCeEEEecCCccchhhhc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEADIR 283 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l----------~~~~~~i~~~~~~~~s~l~ 283 (728)
.++|++..++++.+.+.. ....++||+||||||||++|+++|..+ +.+++.++++
T Consensus 181 ~iiGr~~~i~~l~~~l~r------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--------- 245 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSR------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------- 245 (468)
T ss_dssp CCCCCHHHHHHHHHHHHC------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CccCcHHHHHHHHHHHhc------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---------
Confidence 699999999999987753 345689999999999999999999997 5566666665
Q ss_pred cCccccccCCcchHHHHHhhcCC-CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEe
Q 004834 284 GHRRTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVAT 362 (728)
Q Consensus 284 g~~~~yvG~~~g~l~~~~~~a~~-~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~T 362 (728)
..|.|.....+...+..+.. .+.|+||| .. .+.++.|+..|+. ..+.+|++
T Consensus 246 ---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~----~~a~~~L~~~L~~-----------------g~v~vI~a 297 (468)
T 3pxg_A 246 ---TKYRGEFEDRLKKVMDEIRQAGNIILFID----AA----IDASNILKPSLAR-----------------GELQCIGA 297 (468)
T ss_dssp ----------CTTHHHHHHHHHTCCCCEEEEC----C------------CCCTTS-----------------SSCEEEEE
T ss_pred ---ccccchHHHHHHHHHHHHHhcCCeEEEEe----Cc----hhHHHHHHHhhcC-----------------CCEEEEec
Confidence 14666666665555554432 24599999 11 2236667777652 24678999
Q ss_pred cCCCC-----CCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHH
Q 004834 363 ANRAQ-----PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 437 (728)
Q Consensus 363 tN~~~-----~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~ 437 (728)
||... .++++|++||.+|.|+.|+.+++..|++.++. +....+ .+.++++++.+++....+..+-|.+-
T Consensus 298 t~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~-~~~~~~-----~~~i~~~al~~l~~~s~~~~~~~~lp 371 (468)
T 3pxg_A 298 TTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRD-RYEAHH-----RVSITDDAIEAAVKLSDRYISDRFLP 371 (468)
T ss_dssp CCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT-TSGGGS-----SCSCCHHHHHHHHHHHHHSSCCSCTT
T ss_pred CCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHH-HHHHhc-----CCCCCHHHHHHHHHHHHHHhccCcCC
Confidence 99887 69999999999999999999999999987642 222223 36789999998887544444433333
Q ss_pred HHHHHHHHHHH
Q 004834 438 RNLAALARAAA 448 (728)
Q Consensus 438 ~~I~~l~r~a~ 448 (728)
+..-.++..++
T Consensus 372 ~~ai~ll~~a~ 382 (468)
T 3pxg_A 372 DKAIDLIDEAG 382 (468)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 33444444444
No 61
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.61 E-value=4.3e-15 Score=160.10 Aligned_cols=212 Identities=17% Similarity=0.188 Sum_probs=123.8
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE----EEecCCcc------------
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI----RISLGGVK------------ 277 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~----~i~~~~~~------------ 277 (728)
+++|++.+++.+...... ....++||+||||||||++|+++++.++.... .+++....
T Consensus 25 ~i~G~~~~~~~l~~~~~~------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVD------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTN 98 (350)
T ss_dssp GSCSCHHHHHHHHHHHHC------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCC
T ss_pred hccChHHHHHHHHHHhhC------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccc
Confidence 589999877764433221 12335999999999999999999999864110 01221110
Q ss_pred ---------------chhhhccCc---c----ccccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhc
Q 004834 278 ---------------DEADIRGHR---R----TYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVL 335 (728)
Q Consensus 278 ---------------~~s~l~g~~---~----~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~L 335 (728)
+..++.|.. . +.....+|.+.. + .+.|+||||++++.++. ++.|+++|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~----a--~~~vl~iDEi~~l~~~~----~~~Ll~~l 168 (350)
T 1g8p_A 99 VIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLAR----A--NRGYLYIDECNLLEDHI----VDLLLDVA 168 (350)
T ss_dssp EEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHH----H--TTEEEEETTGGGSCHHH----HHHHHHHH
T ss_pred cccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeee----c--CCCEEEEeChhhCCHHH----HHHHHHHH
Confidence 011111110 0 000000111111 1 24699999999998766 89999999
Q ss_pred CcccccccccCCCCeeecCCCcEEEEecCCCC-CCChhhhCCeeE-EEcCCC-CHHHHHHHHHHhhch------------
Q 004834 336 DPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-PIPPPLLDRMEV-IELPGY-TPEEKLRIAMRHLIP------------ 400 (728)
Q Consensus 336 d~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~-~l~~~Ll~R~~v-I~~~~~-t~ee~~~Il~~~l~~------------ 400 (728)
+..... +.......+. ..++++|+|+|... .++++|++||.+ +.+++| +.+++.+|++..+..
T Consensus 169 e~~~~~-~~~~g~~~~~-~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~ 246 (350)
T 1g8p_A 169 QSGENV-VERDGLSIRH-PARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWR 246 (350)
T ss_dssp HHSEEE-ECCTTCCEEE-ECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hcCceE-EEecceEEee-CCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccc
Confidence 864211 2111111222 23678999999855 899999999985 999999 567777888763210
Q ss_pred -------HHHhhcCCCccccccCHHHHHHHHHHccccc--chHHHHHHHHHH
Q 004834 401 -------RVLDQHGLGSEFLQIPEAMVKLVIQRYTREA--GVRNLERNLAAL 443 (728)
Q Consensus 401 -------~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~--G~R~L~~~I~~l 443 (728)
+...........+.+++++++++++.+.+.. +.|.+.+.++..
T Consensus 247 ~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a 298 (350)
T 1g8p_A 247 PKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSA 298 (350)
T ss_dssp HHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 0000000011246899999999998654422 456665544433
No 62
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.60 E-value=4e-15 Score=158.42 Aligned_cols=196 Identities=21% Similarity=0.299 Sum_probs=135.7
Q ss_pred HcCCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCC--
Q 004834 189 ADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR-- 266 (728)
Q Consensus 189 ~~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~-- 266 (728)
...||.....+..+ .+++|++++++.+..++... ..++++|+||||||||++|+++++.+..
T Consensus 11 ~~~~~~~k~~p~~~----------~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~ 74 (327)
T 1iqp_A 11 LEKPWVEKYRPQRL----------DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELFGEN 74 (327)
T ss_dssp TTSCHHHHTCCCST----------TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHHGGG
T ss_pred cCCchhhccCCCCH----------HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCCc
Confidence 45677654444222 26899999999998877542 3456999999999999999999998742
Q ss_pred ---CeEEEecCCccchhhhccCccccccCCcchHHHHHhhcC---CCCcEEEEecccccCCCCCCCHHHHHHHhcCcccc
Q 004834 267 ---KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVG---VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQN 340 (728)
Q Consensus 267 ---~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~---~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~ 340 (728)
.++.++++....... ....+.......+ ....|++|||+|.+.++. ++.|+..++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~----~~~L~~~le~~-- 137 (327)
T 1iqp_A 75 WRHNFLELNASDERGINV-----------IREKVKEFARTKPIGGASFKIIFLDEADALTQDA----QQALRRTMEMF-- 137 (327)
T ss_dssp HHHHEEEEETTCHHHHHT-----------THHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHH----HHHHHHHHHHT--
T ss_pred ccCceEEeeccccCchHH-----------HHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHH----HHHHHHHHHhc--
Confidence 245555443211110 1112222222222 124599999999997655 88999988742
Q ss_pred cccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHH
Q 004834 341 KTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMV 420 (728)
Q Consensus 341 ~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l 420 (728)
..++.||+|+|.+..+++++.+||..+.|++++.++..+++...+. .. ++.++++++
T Consensus 138 -------------~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~-----~~-----~~~~~~~~~ 194 (327)
T 1iqp_A 138 -------------SSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE-----NE-----GLELTEEGL 194 (327)
T ss_dssp -------------TTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHH-----TT-----TCEECHHHH
T ss_pred -------------CCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHH-----hc-----CCCCCHHHH
Confidence 1346788899999999999999999999999999999988877642 22 367999999
Q ss_pred HHHHHHcccccchHHHHHHHHH
Q 004834 421 KLVIQRYTREAGVRNLERNLAA 442 (728)
Q Consensus 421 ~~l~~~~~~~~G~R~L~~~I~~ 442 (728)
+.+++.+. .+.|.+.+.++.
T Consensus 195 ~~l~~~~~--g~~r~~~~~l~~ 214 (327)
T 1iqp_A 195 QAILYIAE--GDMRRAINILQA 214 (327)
T ss_dssp HHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHCC--CCHHHHHHHHHH
Confidence 99998653 345555544443
No 63
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=3e-15 Score=161.43 Aligned_cols=208 Identities=17% Similarity=0.217 Sum_probs=132.9
Q ss_pred HcCCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCC--
Q 004834 189 ADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR-- 266 (728)
Q Consensus 189 ~~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~-- 266 (728)
...||.....+..+ .+++|++++++.+..++.. ...++++|+||||||||++|+++|+.++.
T Consensus 23 ~~~~~~~k~~p~~~----------~~i~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~ 86 (353)
T 1sxj_D 23 AQQPWVEKYRPKNL----------DEVTAQDHAVTVLKKTLKS------ANLPHMLFYGPPGTGKTSTILALTKELYGPD 86 (353)
T ss_dssp ---CHHHHTCCSST----------TTCCSCCTTHHHHHHHTTC------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHH
T ss_pred cCccHHHhcCCCCH----------HHhhCCHHHHHHHHHHHhc------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 44677654444222 3689999999888876632 22345999999999999999999998742
Q ss_pred ----CeEEEecCCccchhhhccCccccccCCc-chHHHHHhhcC-CCCcEEEEecccccCCCCCCCHHHHHHHhcCcccc
Q 004834 267 ----KFIRISLGGVKDEADIRGHRRTYIGSMP-GRLIDGLKRVG-VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQN 340 (728)
Q Consensus 267 ----~~~~i~~~~~~~~s~l~g~~~~yvG~~~-g~l~~~~~~a~-~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~ 340 (728)
.+..++++.......+......+..... +.........+ ....|+||||+|.+.+.. ++.|++.|+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~----~~~Ll~~le~~~- 161 (353)
T 1sxj_D 87 LMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADA----QSALRRTMETYS- 161 (353)
T ss_dssp HHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHH----HHHHHHHHHHTT-
T ss_pred ccccceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHH----HHHHHHHHHhcC-
Confidence 4555655442221111100000000000 00000000111 122499999999998765 789999987531
Q ss_pred cccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHH
Q 004834 341 KTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMV 420 (728)
Q Consensus 341 ~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l 420 (728)
.++.||+++|.+..+++++++||..+.|++++.++...++...+. . .++.++++++
T Consensus 162 --------------~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~-----~-----~~~~i~~~~l 217 (353)
T 1sxj_D 162 --------------GVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISE-----Q-----ENVKCDDGVL 217 (353)
T ss_dssp --------------TTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHH-----T-----TTCCCCHHHH
T ss_pred --------------CCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHH-----H-----hCCCCCHHHH
Confidence 245677888999999999999999999999999999998887642 1 2367899999
Q ss_pred HHHHHHcccccchHHHHHHHHHH
Q 004834 421 KLVIQRYTREAGVRNLERNLAAL 443 (728)
Q Consensus 421 ~~l~~~~~~~~G~R~L~~~I~~l 443 (728)
.++++... ..+|.+.+.++..
T Consensus 218 ~~l~~~~~--G~~r~~~~~l~~~ 238 (353)
T 1sxj_D 218 ERILDISA--GDLRRGITLLQSA 238 (353)
T ss_dssp HHHHHHTS--SCHHHHHHHHHHT
T ss_pred HHHHHHcC--CCHHHHHHHHHHH
Confidence 99998654 3455555544443
No 64
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.58 E-value=3.3e-15 Score=178.43 Aligned_cols=205 Identities=23% Similarity=0.309 Sum_probs=147.4
Q ss_pred hccccchHHHHHHHHHHHHhhccCC-------CCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhcc
Q 004834 212 DSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRG 284 (728)
Q Consensus 212 ~~~i~G~~~vk~~i~~~l~~~~~~~-------~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g 284 (728)
.++++|++.+++.+.+++.....++ -.++.+++|+||||||||++|+++|..++.+++.+++.....
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~------ 276 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS------ 276 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS------
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh------
Confidence 3579999999999999887643321 256678999999999999999999999999998888644322
Q ss_pred CccccccCCcchHHHHHhhcCCC-CcEEEEecccccCCCCCCC-------HHHHHHHhcCcccccccccCCCCeeecCCC
Q 004834 285 HRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRGD-------PASALLEVLDPEQNKTFNDHYLNVPFDLSK 356 (728)
Q Consensus 285 ~~~~yvG~~~g~l~~~~~~a~~~-~~VlllDEidkl~~~~~~~-------~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~ 356 (728)
.|.|.....+...|..+... ..++|+||+|.+.+..... ..+.|+++++... ...+
T Consensus 277 ---~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-------------~~~~ 340 (806)
T 1ypw_A 277 ---KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-------------QRAH 340 (806)
T ss_dssp ---SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-------------TTSC
T ss_pred ---hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-------------cccc
Confidence 34555555555555554322 3499999999998764221 1456777776321 1245
Q ss_pred cEEEEecCCCCCCChhhhC--Cee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccch
Q 004834 357 VIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGV 433 (728)
Q Consensus 357 vi~I~TtN~~~~l~~~Ll~--R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~ 433 (728)
+++|+|||.++.+++++.+ ||+ .+.++.|+.+++.+|++.+... ..+ ..+..+..++..+.+..|
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~-----~~l------~~~~~l~~la~~t~g~~g- 408 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN-----MKL------ADDVDLEQVANETHGHVG- 408 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT-----SCC------CTTCCTHHHHHSCSSCCH-
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhc-----CCC------cccchhHHHHHhhcCcch-
Confidence 7899999999999999998 996 7999999999999999877421 111 122224556665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004834 434 RNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 434 R~L~~~I~~l~r~a~~~~~~~ 454 (728)
+.+..+|+.++...++.
T Consensus 409 ----~dl~~l~~ea~~~a~r~ 425 (806)
T 1ypw_A 409 ----ADLAALCSEAALQAIRK 425 (806)
T ss_dssp ----HHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHhh
Confidence 67888888888887765
No 65
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.56 E-value=7.5e-15 Score=157.13 Aligned_cols=170 Identities=16% Similarity=0.265 Sum_probs=118.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEec
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 315 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDE 315 (728)
.+.+++|+||||||||++|+++++.+ +.+++.+++..... ++. +.........+...-....|+||||
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~vL~iDE 106 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ--AMV-------EHLKKGTINEFRNMYKSVDLLLLDD 106 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH--HHH-------HHHHHTCHHHHHHHHHTCSEEEEEC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH--HHH-------HHHHcCcHHHHHHHhcCCCEEEEcC
Confidence 45679999999999999999999998 78888887654311 111 1111011111211111246999999
Q ss_pred ccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC---CCChhhhCCe---eEEEcCCCCHHH
Q 004834 316 IDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ---PIPPPLLDRM---EVIELPGYTPEE 389 (728)
Q Consensus 316 idkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~---~l~~~Ll~R~---~vI~~~~~t~ee 389 (728)
++.+..+. ..+..|+.+++... +....++++++|.+. .++++|++|| .++.+++ +.++
T Consensus 107 i~~l~~~~--~~~~~l~~~l~~~~-------------~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e 170 (324)
T 1l8q_A 107 VQFLSGKE--RTQIEFFHIFNTLY-------------LLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKT 170 (324)
T ss_dssp GGGGTTCH--HHHHHHHHHHHHHH-------------HTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHH
T ss_pred cccccCCh--HHHHHHHHHHHHHH-------------HCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHH
Confidence 99987632 12667777775321 112245666666655 6899999999 5799999 9999
Q ss_pred HHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHHH
Q 004834 390 KLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARA 446 (728)
Q Consensus 390 ~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~ 446 (728)
+.+|++.++. .. ++.++++++.++++.+ .++|.+...++.++..
T Consensus 171 ~~~il~~~~~-----~~-----~~~l~~~~l~~l~~~~---g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 171 RFKIIKEKLK-----EF-----NLELRKEVIDYLLENT---KNVREIEGKIKLIKLK 214 (324)
T ss_dssp HHHHHHHHHH-----HT-----TCCCCHHHHHHHHHHC---SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----hc-----CCCCCHHHHHHHHHhC---CCHHHHHHHHHHHHHc
Confidence 9999988752 22 3578999999999876 6789999988888764
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.55 E-value=2.8e-14 Score=170.08 Aligned_cols=164 Identities=20% Similarity=0.345 Sum_probs=114.7
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh----------CCCeEEEecCCccchhhhc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEADIR 283 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l----------~~~~~~i~~~~~~~~s~l~ 283 (728)
.++|+++.++++.+.+.. ....++||+||||||||++|+++|+.+ +.+++.++++
T Consensus 181 ~iiG~~~~i~~l~~~l~~------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g--------- 245 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSR------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------- 245 (758)
T ss_dssp CCCCCHHHHHHHHHHHHC------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CccCchHHHHHHHHHHhC------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccc---------
Confidence 699999999999988753 345689999999999999999999997 5666666651
Q ss_pred cCccccccCCcchHHHHHhhcCCC-CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEe
Q 004834 284 GHRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVAT 362 (728)
Q Consensus 284 g~~~~yvG~~~g~l~~~~~~a~~~-~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~T 362 (728)
..|.|.....+...+..+... +.|+||| .. .+.++.|+..|+. ..+.+|+|
T Consensus 246 ---~~~~G~~e~~l~~~~~~~~~~~~~iLfiD----~~----~~~~~~L~~~l~~-----------------~~v~~I~a 297 (758)
T 3pxi_A 246 ---TKYRGEFEDRLKKVMDEIRQAGNIILFID----AA----IDASNILKPSLAR-----------------GELQCIGA 297 (758)
T ss_dssp ----------CTTHHHHHHHHHTCCCCEEEEC----C------------CCCTTS-----------------SSCEEEEE
T ss_pred ---ccccchHHHHHHHHHHHHHhcCCEEEEEc----Cc----hhHHHHHHHHHhc-----------------CCEEEEeC
Confidence 146777777777666654433 3599999 11 2236677777652 24688999
Q ss_pred cCCCC-----CCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHH
Q 004834 363 ANRAQ-----PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQR 426 (728)
Q Consensus 363 tN~~~-----~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~ 426 (728)
||... .++++|++||.+|.|+.|+.+++..|++... ++....+ .+.++++++..+++.
T Consensus 298 t~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~-~~~~~~~-----~~~i~~~al~~~~~~ 360 (758)
T 3pxi_A 298 TTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLR-DRYEAHH-----RVSITDDAIEAAVKL 360 (758)
T ss_dssp CCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT-TTSGGGS-----SCSCCHHHHHHHHHH
T ss_pred CChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH-HHHHHhc-----CCCCCHHHHHHHHHH
Confidence 99888 7999999999999999999999999998654 2222222 367899998888763
No 67
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.55 E-value=4.2e-14 Score=154.22 Aligned_cols=201 Identities=16% Similarity=0.154 Sum_probs=137.4
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh-----------CCCeEEEecCCcc-c--
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL-----------GRKFIRISLGGVK-D-- 278 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l-----------~~~~~~i~~~~~~-~-- 278 (728)
.+++|.++..+.+..++..... ...+.+++|+||||||||++|+++++.+ +.+++.+++.... +
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 5789999999999887765332 2345689999999999999999999988 7788888876543 2
Q ss_pred ------hhhhccCccccccCCcchHHHHHhh-cCCCCcEEEEecccccCCCCCCCHHHH-HHHhcCcccccccccCCCCe
Q 004834 279 ------EADIRGHRRTYIGSMPGRLIDGLKR-VGVCNPVMLLDEIDKTGSDVRGDPASA-LLEVLDPEQNKTFNDHYLNV 350 (728)
Q Consensus 279 ------~s~l~g~~~~yvG~~~g~l~~~~~~-a~~~~~VlllDEidkl~~~~~~~~~~~-Ll~~Ld~~~~~~~~d~~~~~ 350 (728)
...+.|....+.|.....+...+.. .....+|++|||+|.+..... .+. +..++...
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~---~~~~l~~l~~~~------------ 162 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRG---GDIVLYQLLRSD------------ 162 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTT---SHHHHHHHHTSS------------
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCC---CceeHHHHhcCC------------
Confidence 2223344444445544444443332 222233999999999975421 344 55554421
Q ss_pred eecCCCcEEEEecCCC---CCCChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHH
Q 004834 351 PFDLSKVIFVATANRA---QPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQR 426 (728)
Q Consensus 351 ~~d~~~vi~I~TtN~~---~~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~ 426 (728)
.++.||+|+|.. ..+++++++||. .+.|++|+.++..+|++.++.. +. ....+++++++.+++.
T Consensus 163 ----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~------~~--~~~~~~~~~~~~i~~~ 230 (384)
T 2qby_B 163 ----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY------GL--IKGTYDDEILSYIAAI 230 (384)
T ss_dssp ----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH------TS--CTTSCCSHHHHHHHHH
T ss_pred ----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh------hc--ccCCcCHHHHHHHHHH
Confidence 456889999987 678999999984 8999999999999999987521 11 1246889999998886
Q ss_pred cccc-cchHHHHHHHHH
Q 004834 427 YTRE-AGVRNLERNLAA 442 (728)
Q Consensus 427 ~~~~-~G~R~L~~~I~~ 442 (728)
+... ..+|.+.+.++.
T Consensus 231 ~~~~~G~~r~a~~~l~~ 247 (384)
T 2qby_B 231 SAKEHGDARKAVNLLFR 247 (384)
T ss_dssp HHTTCCCHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHH
Confidence 5422 335544444433
No 68
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.54 E-value=7.1e-14 Score=140.90 Aligned_cols=191 Identities=21% Similarity=0.191 Sum_probs=124.4
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEe--cCCccchhhhcc-Cccccc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS--LGGVKDEADIRG-HRRTYI 290 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~--~~~~~~~s~l~g-~~~~yv 290 (728)
+++|.+..++.+..++... ..++.++|+||||||||++++.+++.+........ +........+.. ....+.
T Consensus 24 ~~~g~~~~~~~l~~~l~~~-----~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSLG-----RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLI 98 (250)
T ss_dssp GCCSCHHHHHHHHHHHHHT-----CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEE
T ss_pred HHhCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceE
Confidence 6899999999998887542 22357999999999999999999998854321111 000000000000 000000
Q ss_pred c------CCcchHHHHHhhcC-----CCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEE
Q 004834 291 G------SMPGRLIDGLKRVG-----VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIF 359 (728)
Q Consensus 291 G------~~~g~l~~~~~~a~-----~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~ 359 (728)
+ .....+.+.+.... ....+++|||++.+.+.. ++.|+..++.. ..++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~----~~~l~~~l~~~---------------~~~~~~ 159 (250)
T 1njg_A 99 EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS----FNALLKTLEEP---------------PEHVKF 159 (250)
T ss_dssp EEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHH----HHHHHHHHHSC---------------CTTEEE
T ss_pred EecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHH----HHHHHHHHhcC---------------CCceEE
Confidence 0 00122333333321 123499999999987654 78888887531 235688
Q ss_pred EEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHH
Q 004834 360 VATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERN 439 (728)
Q Consensus 360 I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~ 439 (728)
|+|+|....+++++++|+..+.+++++.++..+++..++. .. ...++++++..+++.+.+ ..|.+.+.
T Consensus 160 i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~-----~~-----~~~~~~~~~~~l~~~~~G--~~~~~~~~ 227 (250)
T 1njg_A 160 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN-----EE-----HIAHEPRALQLLARAAEG--SLRDALSL 227 (250)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH-----HT-----TCCBCHHHHHHHHHHHTT--CHHHHHHH
T ss_pred EEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHH-----hc-----CCCCCHHHHHHHHHHcCC--CHHHHHHH
Confidence 8999998899999999999999999999999999888752 22 357889999999886533 34444433
Q ss_pred H
Q 004834 440 L 440 (728)
Q Consensus 440 I 440 (728)
+
T Consensus 228 ~ 228 (250)
T 1njg_A 228 T 228 (250)
T ss_dssp H
T ss_pred H
Confidence 3
No 69
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=1.8e-14 Score=153.04 Aligned_cols=182 Identities=16% Similarity=0.239 Sum_probs=127.3
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC-----CCeEEEecCCccchhhhccCccc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG-----RKFIRISLGGVKDEADIRGHRRT 288 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~-----~~~~~i~~~~~~~~s~l~g~~~~ 288 (728)
+++|++.+++.+..++.. ...++++|+||||+|||++|+++++.+. ..++.++.+.......+
T Consensus 22 ~~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i------ 89 (323)
T 1sxj_B 22 DIVGNKETIDRLQQIAKD------GNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV------ 89 (323)
T ss_dssp GCCSCTHHHHHHHHHHHS------CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH------
T ss_pred HHHCCHHHHHHHHHHHHc------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH------
Confidence 688999999998887752 2334599999999999999999999873 23455544332111111
Q ss_pred cccCCcchHHHHHh--hcCC---CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEec
Q 004834 289 YIGSMPGRLIDGLK--RVGV---CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA 363 (728)
Q Consensus 289 yvG~~~g~l~~~~~--~a~~---~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~Tt 363 (728)
..+.+.+. ..+. ...|++|||+|.+.... ++.|+..++.. ..++.||+++
T Consensus 90 ------~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~----~~~L~~~le~~---------------~~~~~~il~~ 144 (323)
T 1sxj_B 90 ------RNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGA----QQALRRTMELY---------------SNSTRFAFAC 144 (323)
T ss_dssp ------HTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHH----HHTTHHHHHHT---------------TTTEEEEEEE
T ss_pred ------HHHHHHHHhccccCCCCCceEEEEECcccCCHHH----HHHHHHHHhcc---------------CCCceEEEEe
Confidence 11122222 1111 13599999999997654 77888888642 1346788899
Q ss_pred CCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHH
Q 004834 364 NRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAAL 443 (728)
Q Consensus 364 N~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l 443 (728)
|....+++++.+||.++.|++|+.++..+++..++. .. ++.++++++..+++.+. ...|.+.+.++..
T Consensus 145 ~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~-----~~-----~~~~~~~~~~~l~~~~~--G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 145 NQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIK-----LE-----DVKYTNDGLEAIIFTAE--GDMRQAINNLQST 212 (323)
T ss_dssp SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH-----HH-----TCCBCHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred CChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 999999999999999999999999999999887642 22 25689999999988653 3455555555544
Q ss_pred H
Q 004834 444 A 444 (728)
Q Consensus 444 ~ 444 (728)
+
T Consensus 213 ~ 213 (323)
T 1sxj_B 213 V 213 (323)
T ss_dssp H
T ss_pred H
Confidence 4
No 70
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=2.8e-15 Score=173.21 Aligned_cols=221 Identities=16% Similarity=0.161 Sum_probs=131.0
Q ss_pred HHHHhhhccccchHHHHHHHHHHHHhhcc-----CCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchh
Q 004834 206 AAKERLDSDHYGLVRVKQRIIEYLAVRKL-----KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA 280 (728)
Q Consensus 206 ~~~~~L~~~i~G~~~vk~~i~~~l~~~~~-----~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s 280 (728)
.+...+...++|++.+++.+...+..... .......++||+||||||||++|+++|+.+++.++.... ..+.+
T Consensus 288 ~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~--~~~~~ 365 (595)
T 3f9v_A 288 RIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGK--GSTAA 365 (595)
T ss_dssp THHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTT--CSTTT
T ss_pred HHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCC--ccccc
Confidence 45566778899999998887554432110 000122379999999999999999999999776543211 11222
Q ss_pred hhccCcc--cccc---CCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeec-C
Q 004834 281 DIRGHRR--TYIG---SMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD-L 354 (728)
Q Consensus 281 ~l~g~~~--~yvG---~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d-~ 354 (728)
.+.+... .+.| ..+|.+..+ .++|+||||||++.++. ++.|+++|+.... .....|.... .
T Consensus 366 ~l~~~~~~~~~~g~~~~~~G~l~~A------~~gil~IDEid~l~~~~----q~~Ll~~le~~~i---~i~~~g~~~~~~ 432 (595)
T 3f9v_A 366 GLTAAVVREKGTGEYYLEAGALVLA------DGGIAVIDEIDKMRDED----RVAIHEAMEQQTV---SIAKAGIVAKLN 432 (595)
T ss_dssp TSEEECSSGGGTSSCSEEECHHHHH------SSSEECCTTTTCCCSHH----HHHHHHHHHSSSE---EEESSSSEEEEC
T ss_pred cccceeeeccccccccccCCeeEec------CCCcEEeehhhhCCHhH----hhhhHHHHhCCEE---EEecCCcEEEec
Confidence 2222110 0111 122333332 34699999999998876 8999999986432 1111122222 2
Q ss_pred CCcEEEEecCCCC-------------CCChhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHh--hcCCC---------
Q 004834 355 SKVIFVATANRAQ-------------PIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLD--QHGLG--------- 409 (728)
Q Consensus 355 ~~vi~I~TtN~~~-------------~l~~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~--~~~~~--------- 409 (728)
.++.+|+|+|+.. .++++|++||+ ++.+.++..++...|+++.+...... ...+.
T Consensus 433 ~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~ 512 (595)
T 3f9v_A 433 ARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIA 512 (595)
T ss_dssp CCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHH
T ss_pred CceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHH
Confidence 4678999999986 89999999997 44444444434666666554211000 00000
Q ss_pred ----ccccccCHHHHHHHHHHcc-------------cccchHHHHHHHH
Q 004834 410 ----SEFLQIPEAMVKLVIQRYT-------------REAGVRNLERNLA 441 (728)
Q Consensus 410 ----~~~~~i~d~~l~~l~~~~~-------------~~~G~R~L~~~I~ 441 (728)
.....+++++.+.|.+.|. ....+|.|.+.+.
T Consensus 513 ~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lir 561 (595)
T 3f9v_A 513 YARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIR 561 (595)
T ss_dssp HHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHH
Confidence 0023678888888887654 2455666655543
No 71
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.52 E-value=1.3e-14 Score=141.08 Aligned_cols=153 Identities=20% Similarity=0.297 Sum_probs=103.3
Q ss_pred hccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh----------CCCeEEEecCCccchhh
Q 004834 212 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEAD 281 (728)
Q Consensus 212 ~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l----------~~~~~~i~~~~~~~~s~ 281 (728)
..+++|.++..+.+.+.+.. ..+.+++|+||||||||++++++++.+ +.+++.+++......
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 92 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQR------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAG-- 92 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTS------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTT--
T ss_pred ccccccchHHHHHHHHHHhc------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhcc--
Confidence 34689999998888887642 345679999999999999999999987 455555554332110
Q ss_pred hccCccccccCCcchHHHHHhhc--CCCCcEEEEecccccCCCC----CCCHHHHHHHhcCcccccccccCCCCeeecCC
Q 004834 282 IRGHRRTYIGSMPGRLIDGLKRV--GVCNPVMLLDEIDKTGSDV----RGDPASALLEVLDPEQNKTFNDHYLNVPFDLS 355 (728)
Q Consensus 282 l~g~~~~yvG~~~g~l~~~~~~a--~~~~~VlllDEidkl~~~~----~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~ 355 (728)
..+.|.....+.+.+... .....|++|||+|.+.+.. ..+..+.|..+++. .
T Consensus 93 -----~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~-----------------~ 150 (195)
T 1jbk_A 93 -----AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-----------------G 150 (195)
T ss_dssp -----TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT-----------------T
T ss_pred -----CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc-----------------C
Confidence 112222222333333322 1123389999999997432 12235666665532 3
Q ss_pred CcEEEEecCCCC-----CCChhhhCCeeEEEcCCCCHHHHHHHH
Q 004834 356 KVIFVATANRAQ-----PIPPPLLDRMEVIELPGYTPEEKLRIA 394 (728)
Q Consensus 356 ~vi~I~TtN~~~-----~l~~~Ll~R~~vI~~~~~t~ee~~~Il 394 (728)
++.+|+|+|... .+++++++||..+.+++|+.+++.+|+
T Consensus 151 ~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 151 ELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp SCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 457888888775 789999999999999999999988764
No 72
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=5.2e-14 Score=151.72 Aligned_cols=182 Identities=24% Similarity=0.338 Sum_probs=125.1
Q ss_pred cCCCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCC--
Q 004834 190 DLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK-- 267 (728)
Q Consensus 190 ~iP~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~-- 267 (728)
..||........++ +++|++.+++.+...+... ..++++|+|||||||||+++++|+.+..+
T Consensus 12 ~~~~~~k~rp~~~~----------~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 12 NLPWVEKYRPETLD----------EVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CCCHHHHTCCSSGG----------GCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred CCchHHHhCCCcHH----------HhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 46776655443332 5889999999888877532 23459999999999999999999998432
Q ss_pred ---eEEEecCCccchhhhccCccccccCCcchHHHHHhh--cCC--CCcEEEEecccccCCCCCCCHHHHHHHhcCcccc
Q 004834 268 ---FIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKR--VGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQN 340 (728)
Q Consensus 268 ---~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~--a~~--~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~ 340 (728)
+..++.+.......+ ......+.. .+. ...|+++||+|.+..+. +++|+..++..
T Consensus 76 ~~~~~~~~~~~~~~~~~i------------r~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~----~~~L~~~le~~-- 137 (340)
T 1sxj_C 76 SNMVLELNASDDRGIDVV------------RNQIKDFASTRQIFSKGFKLIILDEADAMTNAA----QNALRRVIERY-- 137 (340)
T ss_dssp HHHEEEECTTSCCSHHHH------------HTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHH----HHHHHHHHHHT--
T ss_pred cceEEEEcCcccccHHHH------------HHHHHHHHhhcccCCCCceEEEEeCCCCCCHHH----HHHHHHHHhcC--
Confidence 233332221111000 011111221 111 23599999999997654 88999988742
Q ss_pred cccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHH
Q 004834 341 KTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMV 420 (728)
Q Consensus 341 ~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l 420 (728)
..++.||+++|....+.+++++||..+.|.+++.++..+++...+. . ..+.++++++
T Consensus 138 -------------~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~-----~-----~~~~i~~~~~ 194 (340)
T 1sxj_C 138 -------------TKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLV-----H-----EKLKLSPNAE 194 (340)
T ss_dssp -------------TTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH-----T-----TTCCBCHHHH
T ss_pred -------------CCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHH-----H-----cCCCCCHHHH
Confidence 1345788889999999999999999999999999998888876642 1 2367899999
Q ss_pred HHHHHHcc
Q 004834 421 KLVIQRYT 428 (728)
Q Consensus 421 ~~l~~~~~ 428 (728)
..++....
T Consensus 195 ~~i~~~s~ 202 (340)
T 1sxj_C 195 KALIELSN 202 (340)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcC
Confidence 98887543
No 73
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=3.4e-14 Score=153.58 Aligned_cols=204 Identities=16% Similarity=0.221 Sum_probs=128.7
Q ss_pred CCCccchhHHhcHHHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh-CCCeEE
Q 004834 192 PWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL-GRKFIR 270 (728)
Q Consensus 192 P~~~~~~~~~~~l~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l-~~~~~~ 270 (728)
||.....+..++ +++|++.+++.+..++. .....++++|+||||+||||+++++|+.+ +.....
T Consensus 3 ~w~~kyrP~~~~----------~~vg~~~~~~~l~~~~~-----~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~ 67 (354)
T 1sxj_E 3 LWVDKYRPKSLN----------ALSHNEELTNFLKSLSD-----QPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYR 67 (354)
T ss_dssp -CTTTTCCCSGG----------GCCSCHHHHHHHHTTTT-----CTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC
T ss_pred cchhccCCCCHH----------HhcCCHHHHHHHHHHHh-----hCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCe
Confidence 777666553333 68899998887776541 12334459999999999999999999965 322221
Q ss_pred EecCCc--c-------------c--hhhhccCccccccCCcc-hHHHHHhhc----C-----------CCCcEEEEeccc
Q 004834 271 ISLGGV--K-------------D--EADIRGHRRTYIGSMPG-RLIDGLKRV----G-----------VCNPVMLLDEID 317 (728)
Q Consensus 271 i~~~~~--~-------------~--~s~l~g~~~~yvG~~~g-~l~~~~~~a----~-----------~~~~VlllDEid 317 (728)
+.+.+. . . ...+.+ ...+...+ .+.+.+... + ....|++|||++
T Consensus 68 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~ 144 (354)
T 1sxj_E 68 LKIDVRQFVTASNRKLELNVVSSPYHLEITP---SDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEAN 144 (354)
T ss_dssp ------------------CCEECSSEEEECC---C----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTT
T ss_pred EEecceeecccccccceeeeecccceEEecH---hhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcc
Confidence 111110 0 0 000000 00011110 122222211 1 123499999999
Q ss_pred ccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHh
Q 004834 318 KTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRH 397 (728)
Q Consensus 318 kl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~ 397 (728)
.+.+.. ++.|++.|+.. ..++.||++||.+..+.+++++||..+.|++|+.++..++++..
T Consensus 145 ~L~~~~----~~~L~~~le~~---------------~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~ 205 (354)
T 1sxj_E 145 SLTKDA----QAALRRTMEKY---------------SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDV 205 (354)
T ss_dssp SSCHHH----HHHHHHHHHHS---------------TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred ccCHHH----HHHHHHHHHhh---------------cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHH
Confidence 976554 78899988742 13457888999999999999999999999999999999988876
Q ss_pred hchHHHhhcCCCccccccC-HHHHHHHHHHcccccchHHHHHHHHHHH
Q 004834 398 LIPRVLDQHGLGSEFLQIP-EAMVKLVIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 398 l~~~~~~~~~~~~~~~~i~-d~~l~~l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
+. .. ++.++ ++++..+++.+. .++|.+.+.+++++
T Consensus 206 ~~-----~~-----~~~~~~~~~l~~i~~~~~--G~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 206 VT-----NE-----RIQLETKDILKRIAQASN--GNLRVSLLMLESMA 241 (354)
T ss_dssp HH-----HH-----TCEECCSHHHHHHHHHHT--TCHHHHHHHHTHHH
T ss_pred HH-----Hc-----CCCCCcHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 42 22 35788 999999987653 45666666665544
No 74
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.50 E-value=2.4e-13 Score=147.67 Aligned_cols=194 Identities=21% Similarity=0.201 Sum_probs=127.6
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE--EecCCccchhhhc-cCccccc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR--ISLGGVKDEADIR-GHRRTYI 290 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~--i~~~~~~~~s~l~-g~~~~yv 290 (728)
+++|++.+++.+...+... ..++.++|+||||||||++|+++|+.++..... ..|+.......+. +..+.++
T Consensus 17 ~~vg~~~~~~~L~~~l~~~-----~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLG-----RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLI 91 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHT-----CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCE
T ss_pred hccCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceE
Confidence 6899999999998887542 234578999999999999999999998653211 1111100000000 0000000
Q ss_pred ---c---CCcchHHHHHhh---cCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEE
Q 004834 291 ---G---SMPGRLIDGLKR---VGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIF 359 (728)
Q Consensus 291 ---G---~~~g~l~~~~~~---a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~ 359 (728)
+ .....+.+.+.. .+.. ..|++|||+|.+.... ++.|+..++.. ..+++|
T Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~----~~~Ll~~le~~---------------~~~~~~ 152 (373)
T 1jr3_A 92 EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS----FNALLKTLEEP---------------PEHVKF 152 (373)
T ss_dssp EEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHH----HHHHHHHHHSC---------------CSSEEE
T ss_pred EecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHH----HHHHHHHHhcC---------------CCceEE
Confidence 0 011223333332 2221 2499999999997654 78899888631 235688
Q ss_pred EEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHH
Q 004834 360 VATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERN 439 (728)
Q Consensus 360 I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~ 439 (728)
|+++|....+.+.+++|+..+.|++++.++..+++..++. .. ++.++++++..+++... ...|.+.+.
T Consensus 153 Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~-----~~-----~~~~~~~a~~~l~~~~~--G~~r~~~~~ 220 (373)
T 1jr3_A 153 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN-----EE-----HIAHEPRALQLLARAAE--GSLRDALSL 220 (373)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH-----HH-----TCCBCHHHHHHHHHHSS--SCHHHHHHH
T ss_pred EEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHHHHCC--CCHHHHHHH
Confidence 8888888899999999999999999999999998887742 22 25789999999987653 355555555
Q ss_pred HHHH
Q 004834 440 LAAL 443 (728)
Q Consensus 440 I~~l 443 (728)
++++
T Consensus 221 l~~~ 224 (373)
T 1jr3_A 221 TDQA 224 (373)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 75
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.50 E-value=3.2e-13 Score=145.37 Aligned_cols=198 Identities=23% Similarity=0.284 Sum_probs=128.5
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCC
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSM 293 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~ 293 (728)
+++|++.+++.+...+...... ..+..+++|+||||||||||++++|+.++.++...+......
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~-~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--------------- 89 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMR-GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--------------- 89 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHH-TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---------------
T ss_pred HccCcHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---------------
Confidence 5789998888887766543221 234467999999999999999999999988776544322111
Q ss_pred cchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccc---cCCCCeeecCCCcEEEEecCCCCCCC
Q 004834 294 PGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFN---DHYLNVPFDLSKVIFVATANRAQPIP 370 (728)
Q Consensus 294 ~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~---d~~~~~~~d~~~vi~I~TtN~~~~l~ 370 (728)
.+.+...+... ....|+|+||++.+.+.. .+.|+..++......+. .........+..+.+++++|.+..++
T Consensus 90 ~~~l~~~~~~~-~~~~v~~iDE~~~l~~~~----~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls 164 (334)
T 1in4_A 90 QGDMAAILTSL-ERGDVLFIDEIHRLNKAV----EELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLS 164 (334)
T ss_dssp HHHHHHHHHHC-CTTCEEEEETGGGCCHHH----HHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSC
T ss_pred HHHHHHHHHHc-cCCCEEEEcchhhcCHHH----HHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCC
Confidence 12222222221 124699999999987643 66776665432111000 00001112344567888899999999
Q ss_pred hhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHH
Q 004834 371 PPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 371 ~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
+++++||. .+.|++++.+++.+|+++... .. .+.++++++.++++...+ ..|.+.+.++.+.
T Consensus 165 ~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~-----~~-----~~~~~~~~~~~ia~~~~G--~~R~a~~ll~~~~ 227 (334)
T 1in4_A 165 SPLRSRFGIILELDFYTVKELKEIIKRAAS-----LM-----DVEIEDAAAEMIAKRSRG--TPRIAIRLTKRVR 227 (334)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHHH-----HT-----TCCBCHHHHHHHHHTSTT--CHHHHHHHHHHHH
T ss_pred HHHHHhcCceeeCCCCCHHHHHHHHHHHHH-----Hc-----CCCcCHHHHHHHHHhcCC--ChHHHHHHHHHHH
Confidence 99999997 689999999999999987632 12 367899999999986543 4455555554443
No 76
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.50 E-value=1e-13 Score=150.88 Aligned_cols=206 Identities=19% Similarity=0.133 Sum_probs=133.3
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh---------CCCeEEEecCCccchhhh-
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---------GRKFIRISLGGVKDEADI- 282 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l---------~~~~~~i~~~~~~~~s~l- 282 (728)
.+++|.+...+.+..++.... ....+.+++|+||||||||++++.+++.+ +.+++.+++....+...+
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 468999999999888764321 12455689999999999999999999998 667788887765443221
Q ss_pred ------ccCccccccCCcchHHHHHhhc-CC--CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeec
Q 004834 283 ------RGHRRTYIGSMPGRLIDGLKRV-GV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD 353 (728)
Q Consensus 283 ------~g~~~~yvG~~~g~l~~~~~~a-~~--~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d 353 (728)
.|......|...+.+.+.+... .. ...|++|||++.+.... ..+..|+.+++..... +.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--~~~~~l~~l~~~~~~~---------~~- 164 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--GGQDLLYRITRINQEL---------GD- 164 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST--THHHHHHHHHHGGGCC------------
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC--CCChHHHhHhhchhhc---------CC-
Confidence 1222222333333333332221 11 12399999999997641 1256677666532110 00
Q ss_pred CCCcEEEEecCCC---CCCChhhhCCe--eEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcc
Q 004834 354 LSKVIFVATANRA---QPIPPPLLDRM--EVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT 428 (728)
Q Consensus 354 ~~~vi~I~TtN~~---~~l~~~Ll~R~--~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~ 428 (728)
..++.+|+++|.. ..+++++.+|| ..+.|++|+.++..+|++.++... . ....+++++++.+++.+.
T Consensus 165 ~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~----~----~~~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 165 RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEA----F----NPGVLDPDVVPLCAALAA 236 (387)
T ss_dssp ---CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHH----B----CTTTBCSSHHHHHHHHHH
T ss_pred CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhh----c----cCCCCCHHHHHHHHHHHH
Confidence 2456889999987 68999999999 589999999999999998875311 0 125678889998887554
Q ss_pred cc-cchHHHHHHH
Q 004834 429 RE-AGVRNLERNL 440 (728)
Q Consensus 429 ~~-~G~R~L~~~I 440 (728)
.. ..+|.+.+.+
T Consensus 237 ~~~G~~r~~~~~l 249 (387)
T 2v1u_A 237 REHGDARRALDLL 249 (387)
T ss_dssp SSSCCHHHHHHHH
T ss_pred HhccCHHHHHHHH
Confidence 22 3344444333
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.50 E-value=5.4e-14 Score=169.64 Aligned_cols=200 Identities=20% Similarity=0.293 Sum_probs=125.0
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh----------CCCeEEEecCCccchhhh
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEADI 282 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l----------~~~~~~i~~~~~~~~s~l 282 (728)
..++|+++.++++.+.+.. ...++++|+||||||||++|+++|+.+ +.+++.++++.....
T Consensus 170 d~viGr~~~i~~l~~~l~~------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g--- 240 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLR------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAG--- 240 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHC------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhc------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhcc---
Confidence 4689999999999887742 234568999999999999999999988 667777777654321
Q ss_pred ccCccccccCCcchHHHHHhhcCC--CCcEEEEecccccCCCCC----CCHHHHHHHhcCcccccccccCCCCeeecCCC
Q 004834 283 RGHRRTYIGSMPGRLIDGLKRVGV--CNPVMLLDEIDKTGSDVR----GDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 356 (728)
Q Consensus 283 ~g~~~~yvG~~~g~l~~~~~~a~~--~~~VlllDEidkl~~~~~----~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~ 356 (728)
..|.|.....+...+..+.. .+.|+||||++.+.+... .+..+.|..+++. .+
T Consensus 241 ----~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~-----------------~~ 299 (854)
T 1qvr_A 241 ----AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-----------------GE 299 (854)
T ss_dssp ---------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT-----------------TC
T ss_pred ----CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC-----------------CC
Confidence 13555555556666554432 234999999999874321 1224556666542 24
Q ss_pred cEEEEecCCCC----CCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccc
Q 004834 357 VIFVATANRAQ----PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAG 432 (728)
Q Consensus 357 vi~I~TtN~~~----~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G 432 (728)
+.+|+++|... .++++|++||+.|.|++|+.+++.+|++..+ ++....++ +.++++++..+++...+...
T Consensus 300 i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~-~~~~~~~~-----~~i~~~al~~~~~ls~r~i~ 373 (854)
T 1qvr_A 300 LRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK-EKYEVHHG-----VRISDSAIIAAATLSHRYIT 373 (854)
T ss_dssp CCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH-HHHHHHTT-----CEECHHHHHHHHHHHHHHCC
T ss_pred eEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh-hhhhhhcC-----CCCCHHHHHHHHHHHhhhcc
Confidence 56888888764 5799999999999999999999999997754 33333333 67899999988875444333
Q ss_pred hHHHHHHHHHHHHHHH
Q 004834 433 VRNLERNLAALARAAA 448 (728)
Q Consensus 433 ~R~L~~~I~~l~r~a~ 448 (728)
-|.+-.....++..++
T Consensus 374 ~~~lp~kai~lldea~ 389 (854)
T 1qvr_A 374 ERRLPDKAIDLIDEAA 389 (854)
T ss_dssp SSCTHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHH
Confidence 3333333444444433
No 78
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=1.8e-13 Score=155.87 Aligned_cols=199 Identities=16% Similarity=0.205 Sum_probs=128.5
Q ss_pred cccchHHHHHHHHHHHHhhccC-----------CCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhh
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLK-----------PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADI 282 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~-----------~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l 282 (728)
+++|++.+++.+..++...... +....+.++|+||||||||++|+++|+.++.+++.++++.......+
T Consensus 40 dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~ 119 (516)
T 1sxj_A 40 QVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLL 119 (516)
T ss_dssp GCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHH
Confidence 6899999999999988652210 01234689999999999999999999999999999988775442211
Q ss_pred ccCccccccCCcchHHHHHhhc------CCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCC
Q 004834 283 RGHRRTYIGSMPGRLIDGLKRV------GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 356 (728)
Q Consensus 283 ~g~~~~yvG~~~g~l~~~~~~a------~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~ 356 (728)
...-....+. ..+...+..+ .....|+||||+|.+..... ...+.|+++++.. +
T Consensus 120 ~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~-~~l~~L~~~l~~~-----------------~ 179 (516)
T 1sxj_A 120 NAGVKNALDN--MSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR-GGVGQLAQFCRKT-----------------S 179 (516)
T ss_dssp HHTGGGGTTB--CCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST-THHHHHHHHHHHC-----------------S
T ss_pred HHHHHHHhcc--ccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH-HHHHHHHHHHHhc-----------------C
Confidence 1000000000 0011111111 12345999999999987542 2357777777531 1
Q ss_pred cEEEEecCCCC-CCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHH
Q 004834 357 VIFVATANRAQ-PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 435 (728)
Q Consensus 357 vi~I~TtN~~~-~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~ 435 (728)
+.||+++|... ...+++.+|+..+.|++|+.+++.+++...+. .. ++.++++++..+++.+. ..+|.
T Consensus 180 ~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~-----~~-----~~~i~~~~l~~la~~s~--GdiR~ 247 (516)
T 1sxj_A 180 TPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAI-----RE-----KFKLDPNVIDRLIQTTR--GDIRQ 247 (516)
T ss_dssp SCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHH-----HH-----TCCCCTTHHHHHHHHTT--TCHHH
T ss_pred CCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHHHHcC--CcHHH
Confidence 12334334332 23356888889999999999999998877642 22 35688999999987653 44777
Q ss_pred HHHHHHHHH
Q 004834 436 LERNLAALA 444 (728)
Q Consensus 436 L~~~I~~l~ 444 (728)
+.+.++.++
T Consensus 248 ~i~~L~~~~ 256 (516)
T 1sxj_A 248 VINLLSTIS 256 (516)
T ss_dssp HHHHHTHHH
T ss_pred HHHHHHHHH
Confidence 766666554
No 79
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.46 E-value=6.4e-14 Score=156.37 Aligned_cols=171 Identities=19% Similarity=0.245 Sum_probs=115.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHh-----CCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCC-CCcEEEE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASAL-----GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGV-CNPVMLL 313 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l-----~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~-~~~Vlll 313 (728)
+.+++|+||||||||+||+++++.+ +.+++.+++.... .++. +.........+..... ...|+||
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~vL~I 200 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL--NDLV-------DSMKEGKLNEFREKYRKKVDILLI 200 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH--HHHH-------HHHHTTCHHHHHHHHTTTCSEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH--HHHH-------HHHHcccHHHHHHHhcCCCCEEEE
Confidence 5679999999999999999999988 6667777655431 1111 1111001112222111 3469999
Q ss_pred ecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC---CCChhhhCCe---eEEEcCCCCH
Q 004834 314 DEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ---PIPPPLLDRM---EVIELPGYTP 387 (728)
Q Consensus 314 DEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~---~l~~~Ll~R~---~vI~~~~~t~ 387 (728)
||++.+..+. ..+..|+..|+.... ....++|+|.|.+. .++++|++|| .++.+++|+.
T Consensus 201 DEi~~l~~~~--~~q~~l~~~l~~l~~-------------~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~ 265 (440)
T 2z4s_A 201 DDVQFLIGKT--GVQTELFHTFNELHD-------------SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_dssp ECGGGGSSCH--HHHHHHHHHHHHHHT-------------TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCH
T ss_pred eCcccccCCh--HHHHHHHHHHHHHHH-------------CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCH
Confidence 9999997631 126778887753211 12235555555554 3889999999 4799999999
Q ss_pred HHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHHH
Q 004834 388 EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARA 446 (728)
Q Consensus 388 ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~ 446 (728)
+++..|++..+. .. ++.++++++.+++..+. ..+|.+.+.++.++..
T Consensus 266 e~r~~iL~~~~~-----~~-----~~~i~~e~l~~la~~~~--gn~R~l~~~L~~~~~~ 312 (440)
T 2z4s_A 266 ETRKSIARKMLE-----IE-----HGELPEEVLNFVAENVD--DNLRRLRGAIIKLLVY 312 (440)
T ss_dssp HHHHHHHHHHHH-----HH-----TCCCCTTHHHHHHHHCC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHHHhcC--CCHHHHHHHHHHHHHH
Confidence 999999988752 22 35789999999998664 5778888887777654
No 80
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.45 E-value=1e-12 Score=141.35 Aligned_cols=169 Identities=13% Similarity=0.143 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE--EecCCc-----------cchhhhccC
Q 004834 219 VRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR--ISLGGV-----------KDEADIRGH 285 (728)
Q Consensus 219 ~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~--i~~~~~-----------~~~s~l~g~ 285 (728)
+++.+.+...+.. ...++.+||+||||+|||++|+++|+.+...... ..|+.- .+...+.+.
T Consensus 8 ~~~~~~l~~~i~~-----~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~ 82 (334)
T 1a5t_A 8 RPDFEKLVASYQA-----GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPE 82 (334)
T ss_dssp HHHHHHHHHHHHT-----TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCC
T ss_pred HHHHHHHHHHHHc-----CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc
Confidence 3444555554432 1334569999999999999999999998643211 001100 000001000
Q ss_pred c-cccccCCcchHHHH---HhhcCC--CCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEE
Q 004834 286 R-RTYIGSMPGRLIDG---LKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIF 359 (728)
Q Consensus 286 ~-~~yvG~~~g~l~~~---~~~a~~--~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~ 359 (728)
. ...++ ...+.+. +...+. ...|++|||+|.+.... +++|+..|++. ..+++|
T Consensus 83 ~~~~~~~--i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a----~naLLk~lEep---------------~~~~~~ 141 (334)
T 1a5t_A 83 KGKNTLG--VDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAA----ANALLKTLEEP---------------PAETWF 141 (334)
T ss_dssp TTCSSBC--HHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHH----HHHHHHHHTSC---------------CTTEEE
T ss_pred ccCCCCC--HHHHHHHHHHHhhccccCCcEEEEECchhhcCHHH----HHHHHHHhcCC---------------CCCeEE
Confidence 0 00011 1223333 332332 23499999999998765 89999999842 245788
Q ss_pred EEecCCCCCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcc
Q 004834 360 VATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT 428 (728)
Q Consensus 360 I~TtN~~~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~ 428 (728)
|++||.++.+++++++||..+.|++|+.++..+++.... .++++++..+++...
T Consensus 142 Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---------------~~~~~~~~~l~~~s~ 195 (334)
T 1a5t_A 142 FLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---------------TMSQDALLAALRLSA 195 (334)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---------------CCCHHHHHHHHHHTT
T ss_pred EEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---------------CCCHHHHHHHHHHcC
Confidence 899999999999999999999999999999998887652 567888888887543
No 81
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.45 E-value=8.7e-13 Score=133.56 Aligned_cols=176 Identities=19% Similarity=0.242 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCccchhhhccCccccccCCcc
Q 004834 219 VRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKDEADIRGHRRTYIGSMPG 295 (728)
Q Consensus 219 ~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g 295 (728)
..+.+.+..++.. ..+.+++|+||||||||++|+++++.+. .++..+++...... + .
T Consensus 37 ~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~---------~----~- 96 (242)
T 3bos_A 37 DELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI---------S----T- 96 (242)
T ss_dssp HHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS---------C----G-
T ss_pred HHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH---------H----H-
Confidence 4555655555431 2567899999999999999999999885 45566665442210 0 0
Q ss_pred hHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCC-CC---CCCh
Q 004834 296 RLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR-AQ---PIPP 371 (728)
Q Consensus 296 ~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~-~~---~l~~ 371 (728)
+.+... ....+++|||++.+..+. ..++.|+.+++.... ...+.+|+|+|. +. .+.+
T Consensus 97 ---~~~~~~-~~~~vliiDe~~~~~~~~--~~~~~l~~~l~~~~~-------------~~~~~ii~~~~~~~~~~~~~~~ 157 (242)
T 3bos_A 97 ---ALLEGL-EQFDLICIDDVDAVAGHP--LWEEAIFDLYNRVAE-------------QKRGSLIVSASASPMEAGFVLP 157 (242)
T ss_dssp ---GGGTTG-GGSSEEEEETGGGGTTCH--HHHHHHHHHHHHHHH-------------HCSCEEEEEESSCTTTTTCCCH
T ss_pred ---HHHHhc-cCCCEEEEeccccccCCH--HHHHHHHHHHHHHHH-------------cCCCeEEEEcCCCHHHHHHhhh
Confidence 011111 124699999999986542 115677777763211 112324455553 33 4669
Q ss_pred hhhCCe---eEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHH
Q 004834 372 PLLDRM---EVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALAR 445 (728)
Q Consensus 372 ~Ll~R~---~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r 445 (728)
++.+|| .++.|++|+.+++.+++..++. ..+ +.+++++++++++.+. ..+|.+.+.++.++.
T Consensus 158 ~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~-----~~~-----~~~~~~~~~~l~~~~~--g~~r~l~~~l~~~~~ 222 (242)
T 3bos_A 158 DLVSRMHWGLTYQLQPMMDDEKLAALQRRAA-----MRG-----LQLPEDVGRFLLNRMA--RDLRTLFDVLDRLDK 222 (242)
T ss_dssp HHHHHHHHSEEEECCCCCGGGHHHHHHHHHH-----HTT-----CCCCHHHHHHHHHHTT--TCHHHHHHHHHHHHH
T ss_pred hhhhHhhcCceEEeCCCCHHHHHHHHHHHHH-----HcC-----CCCCHHHHHHHHHHcc--CCHHHHHHHHHHHHH
Confidence 999999 7899999999999999988752 222 5789999999998664 467777777776664
No 82
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.45 E-value=3e-13 Score=161.28 Aligned_cols=200 Identities=20% Similarity=0.266 Sum_probs=133.6
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh----------CCCeEEEecCCccchhhh
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEADI 282 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l----------~~~~~~i~~~~~~~~s~l 282 (728)
.+++|++..++++.+.+.. ..+.+++|+||||||||++|+++|..+ +..++.++++....
T Consensus 186 d~~iGr~~~i~~l~~~l~~------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~---- 255 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCR------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA---- 255 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTS------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C----
T ss_pred CCccCCHHHHHHHHHHHhc------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc----
Confidence 4789999999998887742 345689999999999999999999987 33344444433221
Q ss_pred ccCccccccCCcchHHHHHhhcCCC-CcEEEEecccccCCCCCC--CH---HHHHHHhcCcccccccccCCCCeeecCCC
Q 004834 283 RGHRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRG--DP---ASALLEVLDPEQNKTFNDHYLNVPFDLSK 356 (728)
Q Consensus 283 ~g~~~~yvG~~~g~l~~~~~~a~~~-~~VlllDEidkl~~~~~~--~~---~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~ 356 (728)
| ..|.|.....+...+...... +.|+||||++.+.+.... .. .+.|..+++ ..+
T Consensus 256 -~--~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-----------------~~~ 315 (758)
T 1r6b_X 256 -G--TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-----------------SGK 315 (758)
T ss_dssp -C--CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-----------------SCC
T ss_pred -c--ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-----------------CCC
Confidence 1 146666666666666555432 459999999999654321 11 223333332 234
Q ss_pred cEEEEecCCC-----CCCChhhhCCeeEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHccccc
Q 004834 357 VIFVATANRA-----QPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 431 (728)
Q Consensus 357 vi~I~TtN~~-----~~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~ 431 (728)
+.+|+++|.. ..++++|.+||..+.|+.|+.+++.+|++... ......+ .+.++++++..++....+..
T Consensus 316 ~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~-~~~~~~~-----~v~~~~~al~~~~~~s~~~i 389 (758)
T 1r6b_X 316 IRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK-PKYEAHH-----DVRYTAKAVRAAVELAVKYI 389 (758)
T ss_dssp CEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH-HHHHHHH-----TCCCCHHHHHHHHHHHHHHC
T ss_pred eEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH-HHHHHhc-----CCCCCHHHHHHHHHHhhhhc
Confidence 6788888864 35789999999999999999999999998754 2222233 36789999998887544444
Q ss_pred chHHHHHHHHHHHHHHH
Q 004834 432 GVRNLERNLAALARAAA 448 (728)
Q Consensus 432 G~R~L~~~I~~l~r~a~ 448 (728)
+.|.+-..+..++.+++
T Consensus 390 ~~~~lp~~~i~lld~a~ 406 (758)
T 1r6b_X 390 NDRHLPDKAIDVIDEAG 406 (758)
T ss_dssp TTSCTTHHHHHHHHHHH
T ss_pred ccccCchHHHHHHHHHH
Confidence 44433344445555544
No 83
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.43 E-value=8.3e-13 Score=143.94 Aligned_cols=212 Identities=17% Similarity=0.300 Sum_probs=146.2
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCC--eEEEecCCccc---hhhhccCccc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK--FIRISLGGVKD---EADIRGHRRT 288 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~--~~~i~~~~~~~---~s~l~g~~~~ 288 (728)
.++|.......+...+.... .....+++.|++||||+.+|+++....++. |+.++|+.... .+++.|+..+
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a----~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g 205 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA----KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKG 205 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH----TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSC
T ss_pred cccccchHHHHHHhhhhhhh----ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCcccc
Confidence 35566655555555443322 223458899999999999999999988654 99999987533 5678887653
Q ss_pred -cccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC-
Q 004834 289 -YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA- 366 (728)
Q Consensus 289 -yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~- 366 (728)
|.|+...+ ...+..+ .++.+|||||+.+++.. +..|+++|+.++........ .+++ ++.+|+|||..
T Consensus 206 ~~tga~~~~-~g~~~~a--~~gtlfldei~~l~~~~----Q~~Ll~~l~~~~~~~~g~~~-~~~~---~~rii~at~~~l 274 (368)
T 3dzd_A 206 AFTGALTRK-KGKLELA--DQGTLFLDEVGELDQRV----QAKLLRVLETGSFTRLGGNQ-KIEV---DIRVISATNKNL 274 (368)
T ss_dssp SSSSCCCCE-ECHHHHT--TTSEEEEETGGGSCHHH----HHHHHHHHHHSEECCBTCCC-BEEC---CCEEEEEESSCH
T ss_pred ccCCccccc-CChHhhc--CCCeEEecChhhCCHHH----HHHHHHHHHhCCcccCCCCc-ceee---eeEEEEecCCCH
Confidence 33433211 1122222 35699999999999877 99999999875543322221 2233 45688888864
Q ss_pred ------CCCChhhhCCee--EEEcCCCCH--HHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHH
Q 004834 367 ------QPIPPPLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 436 (728)
Q Consensus 367 ------~~l~~~Ll~R~~--vI~~~~~t~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L 436 (728)
..|.+.|..|+. .|.+|++.+ ++...++..++ .+...+++ .....+++++++.|.. |.+..++|+|
T Consensus 275 ~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l-~~~~~~~~--~~~~~~~~~a~~~L~~-~~wpGNvreL 350 (368)
T 3dzd_A 275 EEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFL-KKFAKEYK--KNCFELSEETKEYLMK-QEWKGNVREL 350 (368)
T ss_dssp HHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHH-HHHHHHTT--CCCCCBCHHHHHHHHT-CCCTTHHHHH
T ss_pred HHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHH-HHHHHHcC--CCCCCcCHHHHHHHHh-CCCCcHHHHH
Confidence 478999999996 478998877 67777776665 33334443 2346799999998865 7788889999
Q ss_pred HHHHHHHH
Q 004834 437 ERNLAALA 444 (728)
Q Consensus 437 ~~~I~~l~ 444 (728)
++.|+..|
T Consensus 351 ~n~i~~~~ 358 (368)
T 3dzd_A 351 KNLIERAV 358 (368)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998877
No 84
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.43 E-value=8.6e-14 Score=135.05 Aligned_cols=145 Identities=23% Similarity=0.291 Sum_probs=96.7
Q ss_pred hccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh----------CCCeEEEecCCccchhh
Q 004834 212 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEAD 281 (728)
Q Consensus 212 ~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l----------~~~~~~i~~~~~~~~s~ 281 (728)
..+++|++...+.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.+++......
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 92 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSR------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAG-- 92 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTS------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHH--
T ss_pred cchhhcchHHHHHHHHHHhC------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcC--
Confidence 34789999988888887642 345688999999999999999999988 445555544332110
Q ss_pred hccCccccccCCcchHHHHHhhcCC--CCcEEEEecccccCCCC-----CCCHHHHHHHhcCcccccccccCCCCeeecC
Q 004834 282 IRGHRRTYIGSMPGRLIDGLKRVGV--CNPVMLLDEIDKTGSDV-----RGDPASALLEVLDPEQNKTFNDHYLNVPFDL 354 (728)
Q Consensus 282 l~g~~~~yvG~~~g~l~~~~~~a~~--~~~VlllDEidkl~~~~-----~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~ 354 (728)
..+.|.....+...+..... ...|++|||++.+.+.. ..+..+.|...++.
T Consensus 93 -----~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~----------------- 150 (187)
T 2p65_A 93 -----AKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR----------------- 150 (187)
T ss_dssp -----CCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT-----------------
T ss_pred -----CCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc-----------------
Confidence 01222222233333332211 23499999999997432 23345666666542
Q ss_pred CCcEEEEecCCCC-----CCChhhhCCeeEEEcCCCC
Q 004834 355 SKVIFVATANRAQ-----PIPPPLLDRMEVIELPGYT 386 (728)
Q Consensus 355 ~~vi~I~TtN~~~-----~l~~~Ll~R~~vI~~~~~t 386 (728)
.++.+|+++|... .++++|++||..+.++.|+
T Consensus 151 ~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 151 GELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp TCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred CCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 3467889998765 6899999999999998875
No 85
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.43 E-value=1.5e-12 Score=141.94 Aligned_cols=192 Identities=15% Similarity=0.136 Sum_probs=127.3
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh----CCCeEEEecCCccchhhh------
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----GRKFIRISLGGVKDEADI------ 282 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l----~~~~~~i~~~~~~~~s~l------ 282 (728)
.+++|.+...+.+..++...........++++|+||||||||++++++++.+ +..++.+++....+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHH
Confidence 4689999999999888765432222223489999999999999999999998 345677777654432221
Q ss_pred -ccCccccccCCcchHHH----HHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCc
Q 004834 283 -RGHRRTYIGSMPGRLID----GLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 357 (728)
Q Consensus 283 -~g~~~~yvG~~~g~l~~----~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~v 357 (728)
.|......|.....+.+ .+... ....|++|||++.+.... +..|+.+++..... ...++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vlilDE~~~l~~~~----~~~L~~~~~~~~~~-----------~~~~~ 160 (389)
T 1fnn_A 97 SLNIPFPRRGLSRDEFLALLVEHLRER-DLYMFLVLDDAFNLAPDI----LSTFIRLGQEADKL-----------GAFRI 160 (389)
T ss_dssp HTTCCCCSSCCCHHHHHHHHHHHHHHT-TCCEEEEEETGGGSCHHH----HHHHHHHTTCHHHH-----------SSCCE
T ss_pred HhCccCCCCCCCHHHHHHHHHHHHhhc-CCeEEEEEECccccchHH----HHHHHHHHHhCCCC-----------CcCCE
Confidence 12111111222222222 22221 123499999999994433 67777877632100 01356
Q ss_pred EEEEecCCC---CCCChhhhCCee--EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcc
Q 004834 358 IFVATANRA---QPIPPPLLDRME--VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT 428 (728)
Q Consensus 358 i~I~TtN~~---~~l~~~Ll~R~~--vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~ 428 (728)
.||+++|.. ..+.+++.+||. .+.|++|+.++..+++...+... + ....++++++..+++...
T Consensus 161 ~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~-----~---~~~~~~~~~~~~l~~~~~ 228 (389)
T 1fnn_A 161 ALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAG-----L---AEGSYSEDILQMIADITG 228 (389)
T ss_dssp EEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHH-----B---CTTSSCHHHHHHHHHHHS
T ss_pred EEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhh-----c---CCCCCCHHHHHHHHHHHh
Confidence 788888887 678999999996 79999999999999998875311 0 013689999999988653
No 86
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.41 E-value=2.1e-12 Score=141.77 Aligned_cols=212 Identities=18% Similarity=0.267 Sum_probs=145.7
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCccc---hhhhccCcc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKD---EADIRGHRR 287 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~~---~s~l~g~~~ 287 (728)
.++|.....+.+.+.+.... .....++++|++|||||++|+++..... .+|+.++|+.... .+++.|+.+
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a----~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~ 213 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKIS----CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEK 213 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHT----TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCT
T ss_pred hhhhccHHhhHHHHHHHHhc----CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCC
Confidence 35555555555555444321 2234579999999999999999998875 5899999998644 567888764
Q ss_pred c-cccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC
Q 004834 288 T-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA 366 (728)
Q Consensus 288 ~-yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~ 366 (728)
+ |.|..... ...+..+ .++++|||||+.++++. +..|+++|+.++....... ... ..++.+|+|||..
T Consensus 214 g~~tga~~~~-~g~~~~a--~~gtlfldei~~l~~~~----q~~Ll~~l~~~~~~~~g~~-~~~---~~~~rii~at~~~ 282 (387)
T 1ny5_A 214 GAFTGAVSSK-EGFFELA--DGGTLFLDEIGELSLEA----QAKLLRVIESGKFYRLGGR-KEI---EVNVRILAATNRN 282 (387)
T ss_dssp TSSTTCCSCB-CCHHHHT--TTSEEEEESGGGCCHHH----HHHHHHHHHHSEECCBTCC-SBE---ECCCEEEEEESSC
T ss_pred CCCCCccccc-CCceeeC--CCcEEEEcChhhCCHHH----HHHHHHHHhcCcEEeCCCC-cee---eccEEEEEeCCCC
Confidence 3 44443211 1122223 35799999999999877 9999999987543322221 122 2356788999974
Q ss_pred -------CCCChhhhCCee--EEEcCCCCH--HHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHH
Q 004834 367 -------QPIPPPLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 435 (728)
Q Consensus 367 -------~~l~~~Ll~R~~--vI~~~~~t~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~ 435 (728)
..|.+.|..|+. .|.+|++.. ++...++..++ .+...+++. ....++++++..+.. |.+..++|+
T Consensus 283 l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l-~~~~~~~~~--~~~~~~~~a~~~l~~-~~wpGNvre 358 (387)
T 1ny5_A 283 IKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFL-KKFSRKYAK--EVEGFTKSAQELLLS-YPWYGNVRE 358 (387)
T ss_dssp HHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHH-HHHHHHTTC--CCCEECHHHHHHHHH-SCCTTHHHH
T ss_pred HHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHH-HHHHHHcCC--CCCCCCHHHHHHHHh-CCCCcHHHH
Confidence 478999999996 477888765 66666666654 444444442 235699999998865 888889999
Q ss_pred HHHHHHHHH
Q 004834 436 LERNLAALA 444 (728)
Q Consensus 436 L~~~I~~l~ 444 (728)
|++.|++.|
T Consensus 359 L~~~i~~~~ 367 (387)
T 1ny5_A 359 LKNVIERAV 367 (387)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988877
No 87
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.40 E-value=5.2e-13 Score=125.88 Aligned_cols=131 Identities=12% Similarity=0.099 Sum_probs=94.8
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccchhhhccCccccc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYI 290 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~~s~l~g~~~~yv 290 (728)
+++|.+...+.+.+.+.... ..+.+++|+||||||||++|+++++.. +.+|+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----------
T ss_pred CceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----------
Confidence 46788888888887765432 234568999999999999999999987 56888 988764432
Q ss_pred cCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC----
Q 004834 291 GSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA---- 366 (728)
Q Consensus 291 G~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~---- 366 (728)
......+..+. ++++||||||.+.++. +..|+++|... ..++.+|+|||..
T Consensus 66 ----~~~~~~~~~a~--~g~l~ldei~~l~~~~----q~~Ll~~l~~~---------------~~~~~~I~~t~~~~~~~ 120 (145)
T 3n70_A 66 ----PQLNDFIALAQ--GGTLVLSHPEHLTREQ----QYHLVQLQSQE---------------HRPFRLIGIGDTSLVEL 120 (145)
T ss_dssp ----SCHHHHHHHHT--TSCEEEECGGGSCHHH----HHHHHHHHHSS---------------SCSSCEEEEESSCHHHH
T ss_pred ----hhhhcHHHHcC--CcEEEEcChHHCCHHH----HHHHHHHHhhc---------------CCCEEEEEECCcCHHHH
Confidence 12223333332 4699999999998766 88899988321 1234688888875
Q ss_pred ---CCCChhhhCCee--EEEcCCC
Q 004834 367 ---QPIPPPLLDRME--VIELPGY 385 (728)
Q Consensus 367 ---~~l~~~Ll~R~~--vI~~~~~ 385 (728)
..+.+.|..|+. .|.+|++
T Consensus 121 ~~~~~~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 121 AASNHIIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp HHHSCCCHHHHHHHHHHEEECCCC
T ss_pred HHcCCCCHHHHHHhcCCEEeCCCC
Confidence 368899999985 5888876
No 88
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=1.2e-12 Score=138.98 Aligned_cols=143 Identities=14% Similarity=0.171 Sum_probs=101.5
Q ss_pred chHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh------CCCeEEEecCCccchhhhccCccccc
Q 004834 217 GLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL------GRKFIRISLGGVKDEADIRGHRRTYI 290 (728)
Q Consensus 217 G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l------~~~~~~i~~~~~~~~s~l~g~~~~yv 290 (728)
|++++.+.+..++... ..+++||+||||+|||++|+++|+.+ ...+..++..+. ..
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~------------~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE------------NI 62 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS------------CB
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC------------CC
Confidence 6777788887776532 25799999999999999999999864 234555543220 11
Q ss_pred cCC-cchHHHHHhhcCCC--CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC
Q 004834 291 GSM-PGRLIDGLKRVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ 367 (728)
Q Consensus 291 G~~-~g~l~~~~~~a~~~--~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~ 367 (728)
|-. -..+.+.+...+.. ..|+||||+|.+.... +++|+..|++. ..+++||++||.+.
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a----~naLLk~LEep---------------~~~t~fIl~t~~~~ 123 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQA----ANAFLKALEEP---------------PEYAVIVLNTRRWH 123 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHH----HHHTHHHHHSC---------------CTTEEEEEEESCGG
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHH----HHHHHHHHhCC---------------CCCeEEEEEECChH
Confidence 100 01233444444432 2499999999998765 89999999742 24568888888899
Q ss_pred CCChhhhCCeeEEEcCCCCHHHHHHHHHHhh
Q 004834 368 PIPPPLLDRMEVIELPGYTPEEKLRIAMRHL 398 (728)
Q Consensus 368 ~l~~~Ll~R~~vI~~~~~t~ee~~~Il~~~l 398 (728)
.+.|++++| ++.|++++.++..++++..+
T Consensus 124 kl~~tI~SR--~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 124 YLLPTIKSR--VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp GSCHHHHTT--SEEEECCCCHHHHHHHHHHH
T ss_pred hChHHHHce--eEeCCCCCHHHHHHHHHHHh
Confidence 999999999 99999999999998887763
No 89
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=6.7e-12 Score=136.21 Aligned_cols=208 Identities=20% Similarity=0.228 Sum_probs=131.6
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh------CCCeEEEecCCccchhhhc---
Q 004834 213 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL------GRKFIRISLGGVKDEADIR--- 283 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l------~~~~~~i~~~~~~~~s~l~--- 283 (728)
.+++|.++..+.+..++..... ...+..++|+||||||||++++.+++.+ +.+++.+++....+...+.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 4689999998888886653221 2456689999999999999999999988 6777888765433322111
Q ss_pred ----cCccccccCCcchHH----HHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCC
Q 004834 284 ----GHRRTYIGSMPGRLI----DGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS 355 (728)
Q Consensus 284 ----g~~~~yvG~~~g~l~----~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~ 355 (728)
|......|.....+. +.+... ....|++|||++.+......+....|+..++.. ...
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~--------------~~~ 162 (386)
T 2qby_A 98 LESLDVKVPFTGLSIAELYRRLVKAVRDY-GSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV--------------NKS 162 (386)
T ss_dssp TTTTSCCCCSSSCCHHHHHHHHHHHHHTC-CSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC--------------CC-
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhcc-CCeEEEEEcChhhhhccCcCHHHHHHhhchhhc--------------CCC
Confidence 111111222222222 223221 123489999999987543233456666665421 123
Q ss_pred CcEEEEecCCC---CCCChhhhCCe--eEEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccc
Q 004834 356 KVIFVATANRA---QPIPPPLLDRM--EVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTRE 430 (728)
Q Consensus 356 ~vi~I~TtN~~---~~l~~~Ll~R~--~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~ 430 (728)
++.+|+++|.. ..+++.+.+|| ..+.|++|+.++..+++..++.. .. ....++++++..+++.....
T Consensus 163 ~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~----~~----~~~~~~~~~~~~l~~~~~~~ 234 (386)
T 2qby_A 163 KISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQM----AF----KPGVLPDNVIKLCAALAARE 234 (386)
T ss_dssp -EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHH----HB----CSSCSCHHHHHHHHHHHHHT
T ss_pred eEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHh----hc----cCCCCCHHHHHHHHHHHHHh
Confidence 56788888876 46888999999 58999999999999999886521 11 12468899999888754322
Q ss_pred -cchHHHHHHHHHHHHHHHH
Q 004834 431 -AGVRNLERNLAALARAAAV 449 (728)
Q Consensus 431 -~G~R~L~~~I~~l~r~a~~ 449 (728)
..+|.+. ++|+.++.
T Consensus 235 ~G~~r~~~----~ll~~a~~ 250 (386)
T 2qby_A 235 HGDARRAL----DLLRVSGE 250 (386)
T ss_dssp TCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHH----HHHHHHHH
Confidence 3344433 35554443
No 90
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.33 E-value=3.2e-12 Score=140.41 Aligned_cols=197 Identities=14% Similarity=0.118 Sum_probs=117.4
Q ss_pred HHHHHhhhccccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHH-HHHhCCCeEEEecCCccchhhhc
Q 004834 205 KAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSI-ASALGRKFIRISLGGVKDEADIR 283 (728)
Q Consensus 205 ~~~~~~L~~~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~Lakal-A~~l~~~~~~i~~~~~~~~s~l~ 283 (728)
..+...+.. ++|++.+|+.+.-.+....-+ ....-++||.|+||| ||++|+++ ++.+.+..+. ...+ .+...+.
T Consensus 206 ~~l~~sIap-I~G~e~vK~aLll~L~GG~~k-~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft-~g~~-ss~~gLt 280 (506)
T 3f8t_A 206 TTFARAIAP-LPGAEEVGKMLALQLFSCVGK-NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYV-DLRR-TELTDLT 280 (506)
T ss_dssp HHHHHHHCC-STTCHHHHHHHHHHHTTCCSS-GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEE-EGGG-CCHHHHS
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHcCCccc-cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEe-cCCC-CCccCce
Confidence 455667788 999999988877666422100 111228999999999 99999999 7776553322 1111 1122222
Q ss_pred cCc---cccccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEE
Q 004834 284 GHR---RTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFV 360 (728)
Q Consensus 284 g~~---~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I 360 (728)
+.- .+ ....+|.+..+ .++++|+|||+++.++. +++|++.|++.+.... |.++ ..++.+|
T Consensus 281 ~s~r~~tG-~~~~~G~l~LA------dgGvl~lDEIn~~~~~~----qsaLlEaMEe~~VtI~-----G~~l-parf~VI 343 (506)
T 3f8t_A 281 AVLKEDRG-WALRAGAAVLA------DGGILAVDHLEGAPEPH----RWALMEAMDKGTVTVD-----GIAL-NARCAVL 343 (506)
T ss_dssp EEEEESSS-EEEEECHHHHT------TTSEEEEECCTTCCHHH----HHHHHHHHHHSEEEET-----TEEE-ECCCEEE
T ss_pred EEEEcCCC-cccCCCeeEEc------CCCeeehHhhhhCCHHH----HHHHHHHHhCCcEEEC-----CEEc-CCCeEEE
Confidence 210 11 11223444332 35799999999998877 8999999997654322 3333 2356899
Q ss_pred EecCCCC-----------CCChhhhCCeeE--EEcCCCCHHHHH---------HHHHHhhchHHHhhcCCCccccccCHH
Q 004834 361 ATANRAQ-----------PIPPPLLDRMEV--IELPGYTPEEKL---------RIAMRHLIPRVLDQHGLGSEFLQIPEA 418 (728)
Q Consensus 361 ~TtN~~~-----------~l~~~Ll~R~~v--I~~~~~t~ee~~---------~Il~~~l~~~~~~~~~~~~~~~~i~d~ 418 (728)
+|+|+.. .++++++|||+. +.++.++.++-. +.++.++. ..++.. ..+.++++
T Consensus 344 AA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~--~ar~~~---~~p~ls~e 418 (506)
T 3f8t_A 344 AAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL--YAIREH---PAPELTEE 418 (506)
T ss_dssp EEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHH--HHHHHC---SCCEECHH
T ss_pred EEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH--HHHhcC---CCceeCHH
Confidence 9999875 899999999974 334444433211 11222211 111011 14789999
Q ss_pred HHHHHHHHcc
Q 004834 419 MVKLVIQRYT 428 (728)
Q Consensus 419 ~l~~l~~~~~ 428 (728)
+.+++.+.|.
T Consensus 419 a~~yI~~~y~ 428 (506)
T 3f8t_A 419 ARKRLEHWYE 428 (506)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988554
No 91
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.31 E-value=3.4e-13 Score=126.84 Aligned_cols=131 Identities=12% Similarity=0.172 Sum_probs=91.6
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCC
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSM 293 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~ 293 (728)
+++|.+...+.+.+.+.... ..+.+++|+||||||||++|++++.... +++.++++...+. +
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~---------~---- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID---------M---- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH---------C----
T ss_pred CceeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH---------h----
Confidence 47888888888888775433 2345699999999999999999998887 7877777653221 0
Q ss_pred cchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC-CC----
Q 004834 294 PGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-QP---- 368 (728)
Q Consensus 294 ~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~-~~---- 368 (728)
....+..+. +.++||||+|.+.++. +..|+++++..+ ..++.+|+|||.. ..
T Consensus 67 ---~~~~~~~a~--~~~l~lDei~~l~~~~----q~~Ll~~l~~~~--------------~~~~~iI~~tn~~~~~~~~~ 123 (143)
T 3co5_A 67 ---PMELLQKAE--GGVLYVGDIAQYSRNI----QTGITFIIGKAE--------------RCRVRVIASCSYAAGSDGIS 123 (143)
T ss_dssp ---HHHHHHHTT--TSEEEEEECTTCCHHH----HHHHHHHHHHHT--------------TTTCEEEEEEEECTTTC--C
T ss_pred ---hhhHHHhCC--CCeEEEeChHHCCHHH----HHHHHHHHHhCC--------------CCCEEEEEecCCCHHHHHhC
Confidence 223333332 4699999999998766 888999998532 2345788888864 22
Q ss_pred CChhhhCCee--EEEcCCC
Q 004834 369 IPPPLLDRME--VIELPGY 385 (728)
Q Consensus 369 l~~~Ll~R~~--vI~~~~~ 385 (728)
+++.|.+|+. .|.+|++
T Consensus 124 ~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 124 CEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp HHHHHHHHSSSEEEEECCC
T ss_pred ccHHHHHHhcCcEEeCCCC
Confidence 5677788875 4778775
No 92
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.22 E-value=1.8e-11 Score=159.66 Aligned_cols=197 Identities=18% Similarity=0.197 Sum_probs=122.1
Q ss_pred CCEEEEEcCCCCChhHHHHH-HHHHhCCCeEEEecCCccchhhhccCccccccCCc---chHHHHHhhc-CCCCcEEEEe
Q 004834 240 GPVLCFVGPPGVGKTSLASS-IASALGRKFIRISLGGVKDEADIRGHRRTYIGSMP---GRLIDGLKRV-GVCNPVMLLD 314 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~Laka-lA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~---g~l~~~~~~a-~~~~~VlllD 314 (728)
+.++||+||||||||++|+. ++...+..+..++++...+...+.+.-..+..... |.+ +.-. .....|+|||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~---~~P~~~gk~~VlFiD 1343 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT---LLPKSDIKNLVLFCD 1343 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE---EEEBSSSSCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc---ccCCCCCceEEEEec
Confidence 46899999999999999954 44444667788888876655443221111100000 000 0000 1122499999
Q ss_pred cccccCCCCCC--CHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC-----CCChhhhCCeeEEEcCCCCH
Q 004834 315 EIDKTGSDVRG--DPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-----PIPPPLLDRMEVIELPGYTP 387 (728)
Q Consensus 315 Eidkl~~~~~~--~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~-----~l~~~Ll~R~~vI~~~~~t~ 387 (728)
|++....+.-| .+...|.+.+|. .++.+...+......++.||+|+|++. .++++|++||.++.++.|+.
T Consensus 1344 Einmp~~d~yg~q~~lelLRq~le~---gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~ 1420 (2695)
T 4akg_A 1344 EINLPKLDKYGSQNVVLFLRQLMEK---QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSG 1420 (2695)
T ss_dssp TTTCSCCCSSSCCHHHHHHHHHHHT---SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTT
T ss_pred ccccccccccCchhHHHHHHHHHhc---CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCCH
Confidence 99986655422 356778888864 234443333344557889999999984 89999999999999999999
Q ss_pred HHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcc-------------cccchHHHHHHHHHHHHH
Q 004834 388 EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT-------------REAGVRNLERNLAALARA 446 (728)
Q Consensus 388 ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~-------------~~~G~R~L~~~I~~l~r~ 446 (728)
+++..|+..++.... . ....-..+.+......++-|. -..+.|+|-|.++.+++.
T Consensus 1421 ~~l~~I~~~il~~~l-~---~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~~ 1488 (2695)
T 4akg_A 1421 KSLSQIYEIYYKAIF-K---LVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTA 1488 (2695)
T ss_dssp THHHHHHHHHHHHHT-T---SSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-c---cCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHhc
Confidence 999999988764221 1 111111223333333332221 136788888888888763
No 93
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.00 E-value=8.7e-10 Score=120.99 Aligned_cols=195 Identities=16% Similarity=0.130 Sum_probs=115.0
Q ss_pred ccccchHHHHHHHHHHH-HhhccCCCCCCCEEEE--EcCCCCChhHHHHHHHHHhC---------CCeEEEecCCccchh
Q 004834 213 SDHYGLVRVKQRIIEYL-AVRKLKPDARGPVLCF--VGPPGVGKTSLASSIASALG---------RKFIRISLGGVKDEA 280 (728)
Q Consensus 213 ~~i~G~~~vk~~i~~~l-~~~~~~~~~~~~~lLL--~GPpGtGKT~LakalA~~l~---------~~~~~i~~~~~~~~s 280 (728)
..++|.+...+.+..++ ..........+.++++ +||||||||++++.+++.+. ..++.+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 46889998888888877 4332111123457888 99999999999999998873 345566654433322
Q ss_pred hhc-------cCccccccCCcchHH----HHHhhcCCCCcEEEEecccccCCCCCC--CHHHHHHHhcCcccccccccCC
Q 004834 281 DIR-------GHRRTYIGSMPGRLI----DGLKRVGVCNPVMLLDEIDKTGSDVRG--DPASALLEVLDPEQNKTFNDHY 347 (728)
Q Consensus 281 ~l~-------g~~~~yvG~~~g~l~----~~~~~a~~~~~VlllDEidkl~~~~~~--~~~~~Ll~~Ld~~~~~~~~d~~ 347 (728)
.+. |......|.....+. ..+... ....|++|||++.+....+. +....|+..++..
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~--------- 171 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVE-NHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEI--------- 171 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHH-TCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHS---------
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhc---------
Confidence 221 211111121122222 233211 12348999999998653111 1123333433211
Q ss_pred CCeeecC--CCcEEEEecCCCC---CCC---hhhhCCee-EEEcCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHH
Q 004834 348 LNVPFDL--SKVIFVATANRAQ---PIP---PPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEA 418 (728)
Q Consensus 348 ~~~~~d~--~~vi~I~TtN~~~---~l~---~~Ll~R~~-vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~ 418 (728)
+.+. +++.+|+|+|..+ .+. +.+.+|+. .+.+++++.++..+++...+... +. ...++++
T Consensus 172 ---~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~-----~~---~~~~~~~ 240 (412)
T 1w5s_A 172 ---PSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELG-----LR---DTVWEPR 240 (412)
T ss_dssp ---CCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH-----BC---TTSCCHH
T ss_pred ---ccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhc-----CC---CCCCChH
Confidence 0012 4567888887654 334 66777774 59999999999999998764211 11 1357899
Q ss_pred HHHHHHHHcc
Q 004834 419 MVKLVIQRYT 428 (728)
Q Consensus 419 ~l~~l~~~~~ 428 (728)
++..+.+.+.
T Consensus 241 ~~~~i~~~~~ 250 (412)
T 1w5s_A 241 HLELISDVYG 250 (412)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9998888665
No 94
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.94 E-value=4.3e-10 Score=147.50 Aligned_cols=196 Identities=16% Similarity=0.158 Sum_probs=125.8
Q ss_pred CCEEEEEcCCCCChhHHHHHH-HHHhCCCeEEEecCCccchhhhccCccccccCCc----chHHHHHhhcC--CCCcEEE
Q 004834 240 GPVLCFVGPPGVGKTSLASSI-ASALGRKFIRISLGGVKDEADIRGHRRTYIGSMP----GRLIDGLKRVG--VCNPVML 312 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~Lakal-A~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~----g~l~~~~~~a~--~~~~Vll 312 (728)
+.++||+||||||||.++... ++..+.++..++++..++...+.+.-..+..... |.+. ..+ ...-|+|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~----~p~~~Gk~~VlF 1379 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVL----RPTQLGKWLVVF 1379 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEE----EESSTTCEEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCccc----CCCcCCceEEEE
Confidence 456899999999999877554 4443556788999988876665442211110000 1110 010 1123999
Q ss_pred EecccccCCCCCCC--HHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC-----CCCChhhhCCeeEEEcCCC
Q 004834 313 LDEIDKTGSDVRGD--PASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-----QPIPPPLLDRMEVIELPGY 385 (728)
Q Consensus 313 lDEidkl~~~~~~~--~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~-----~~l~~~Ll~R~~vI~~~~~ 385 (728)
+||++...++.-|. +.+.|.++||.+ +|.+...+......++.||+|+|++ ..++++|++||.++.++.|
T Consensus 1380 iDDiNmp~~D~yGtQ~~ielLrqlld~~---g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~i~~p 1456 (3245)
T 3vkg_A 1380 CDEINLPSTDKYGTQRVITFIRQMVEKG---GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFP 1456 (3245)
T ss_dssp ETTTTCCCCCTTSCCHHHHHHHHHHHHS---EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEECCCC
T ss_pred ecccCCCCccccccccHHHHHHHHHHcC---CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEEeCCC
Confidence 99999887765444 578888999853 4555433344556788999999987 3699999999999999999
Q ss_pred CHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcc-------------cccchHHHHHHHHHHHHH
Q 004834 386 TPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT-------------REAGVRNLERNLAALARA 446 (728)
Q Consensus 386 t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~-------------~~~G~R~L~~~I~~l~r~ 446 (728)
+.++...|...++.. ..+ ....-..+.+......++-|. -..+.|+|-|.++.+++.
T Consensus 1457 s~esL~~If~til~~-~l~---~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~~ 1526 (3245)
T 3vkg_A 1457 STSSLTQIYGTFNRA-LMK---LLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEA 1526 (3245)
T ss_dssp CHHHHHHHHHHHHHH-HTT---SCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-HHh---hChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHHh
Confidence 999999998765421 111 111111223444444443221 135889999998888863
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.74 E-value=3.5e-08 Score=129.15 Aligned_cols=136 Identities=21% Similarity=0.269 Sum_probs=96.8
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecccccC
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTG 320 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~ 320 (728)
...++.||||||||++++.+|+.+|+++++++|+...+..++ |++...+... +.++++||++++.
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~l------------g~~~~g~~~~---Gaw~~~DE~nr~~ 710 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVL------------SRLLVGITQI---GAWGCFDEFNRLD 710 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHH------------HHHHHHHHHH---TCEEEEETTTSSC
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHh------------hHHHHHHHhc---CCEeeehhhhhcC
Confidence 457899999999999999999999999999999987776554 3333333332 4699999999998
Q ss_pred CCCCCCHHHHHHHhcCccc----ccccccCCCCeeecCC-CcEEEEecCCC----CCCChhhhCCeeEEEcCCCCHHHHH
Q 004834 321 SDVRGDPASALLEVLDPEQ----NKTFNDHYLNVPFDLS-KVIFVATANRA----QPIPPPLLDRMEVIELPGYTPEEKL 391 (728)
Q Consensus 321 ~~~~~~~~~~Ll~~Ld~~~----~~~~~d~~~~~~~d~~-~vi~I~TtN~~----~~l~~~Ll~R~~vI~~~~~t~ee~~ 391 (728)
++. .+.+-+.++..+ .....-...|..+... ++.+++|.|+. ..+|++|.+||..|.+..|+.+...
T Consensus 711 ~ev----Ls~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ 786 (2695)
T 4akg_A 711 EKV----LSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIA 786 (2695)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCCHHHHH
T ss_pred hHH----HHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEEeeCCCHHHHH
Confidence 876 666633332111 1110111224344333 45677899965 3799999999999999999998888
Q ss_pred HHHH
Q 004834 392 RIAM 395 (728)
Q Consensus 392 ~Il~ 395 (728)
+|+-
T Consensus 787 ei~l 790 (2695)
T 4akg_A 787 EMIL 790 (2695)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7753
No 96
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.71 E-value=2.3e-08 Score=94.43 Aligned_cols=100 Identities=18% Similarity=0.291 Sum_probs=64.3
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEec
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 315 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDE 315 (728)
++..++|+||||+|||+|+++++..+ +...+.++....... .+.. ..++++|||
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~--------------------~~~~---~~~lLilDE 91 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT--------------------DAAF---EAEYLAVDQ 91 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC--------------------GGGG---GCSEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH--------------------HHHh---CCCEEEEeC
Confidence 57789999999999999999999988 433444443322110 1111 246999999
Q ss_pred ccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecC-CCCCCC--hhhhCCee
Q 004834 316 IDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATAN-RAQPIP--PPLLDRME 378 (728)
Q Consensus 316 idkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN-~~~~l~--~~Ll~R~~ 378 (728)
++.+.... +..|+++++..... ...++|.|+| .+..+. +.|.+|+.
T Consensus 92 ~~~~~~~~----~~~l~~li~~~~~~-------------g~~~iiits~~~p~~l~~~~~L~SRl~ 140 (149)
T 2kjq_A 92 VEKLGNEE----QALLFSIFNRFRNS-------------GKGFLLLGSEYTPQQLVIREDLRTRMA 140 (149)
T ss_dssp TTCCCSHH----HHHHHHHHHHHHHH-------------TCCEEEEEESSCTTTSSCCHHHHHHGG
T ss_pred ccccChHH----HHHHHHHHHHHHHc-------------CCcEEEEECCCCHHHccccHHHHHHHh
Confidence 99865543 67788888643211 1222445666 444222 89999984
No 97
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.69 E-value=1.6e-08 Score=98.21 Aligned_cols=123 Identities=20% Similarity=0.200 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh----CCCeEEEecCCccchhhhccCccccccCC
Q 004834 218 LVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----GRKFIRISLGGVKDEADIRGHRRTYIGSM 293 (728)
Q Consensus 218 ~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l----~~~~~~i~~~~~~~~s~l~g~~~~yvG~~ 293 (728)
+..+.+.+.+++..... .++.+++|+||||||||||++++++.+ +.....+++..... .+.. .+....
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~--~~~~---~~~~~~ 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF--RLKH---LMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH--HHHH---HHHHTC
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH--HHHH---HhcCch
Confidence 45566666666543322 347789999999999999999999987 33444444333211 1110 000011
Q ss_pred cchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCC
Q 004834 294 PGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQP 368 (728)
Q Consensus 294 ~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~ 368 (728)
...+...+. ..++++|||++....+. .....|+++++.... .+..+|.|||....
T Consensus 91 ~~~~~~~~~----~~~llilDE~~~~~~~~--~~~~~l~~ll~~~~~--------------~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 91 DTKFLKTVL----NSPVLVLDDLGSERLSD--WQRELISYIITYRYN--------------NLKSTIITTNYSLQ 145 (180)
T ss_dssp CSHHHHHHH----TCSEEEEETCSSSCCCH--HHHHHHHHHHHHHHH--------------TTCEEEEECCCCSC
T ss_pred HHHHHHHhc----CCCEEEEeCCCCCcCCH--HHHHHHHHHHHHHHH--------------cCCCEEEEcCCChh
Confidence 112233333 24699999998543221 114567777764221 12456778887643
No 98
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.60 E-value=1.2e-07 Score=101.93 Aligned_cols=160 Identities=11% Similarity=0.099 Sum_probs=110.9
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCC----CeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCC--CcEEE
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGR----KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVC--NPVML 312 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~----~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~--~~Vll 312 (728)
-.+.++|+||+|+||++.++.+++.+.. ++..+.+.+.. ....+.+.+...+.. ..|++
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~plf~~~kvvi 81 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNT---------------DWNAIFSLCQAMSLFASRQTLL 81 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTC---------------CHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCC---------------CHHHHHHHhcCcCCccCCeEEE
Confidence 4578999999999999999999987631 22223332211 113344444333322 34999
Q ss_pred Eecccc-cCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC------CCCChhhhCCeeEEEcCCC
Q 004834 313 LDEIDK-TGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA------QPIPPPLLDRMEVIELPGY 385 (728)
Q Consensus 313 lDEidk-l~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~------~~l~~~Ll~R~~vI~~~~~ 385 (728)
+||++. +..+. +++|+..++.- ..+++||.+++.. ..+.+++.+|+.++.|.++
T Consensus 82 i~~~~~kl~~~~----~~aLl~~le~p---------------~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l 142 (343)
T 1jr3_D 82 LLLPENGPNAAI----NEQLLTLTGLL---------------HDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTP 142 (343)
T ss_dssp EECCSSCCCTTH----HHHHHHHHTTC---------------BTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCC
T ss_pred EECCCCCCChHH----HHHHHHHHhcC---------------CCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCC
Confidence 999998 76554 89999999742 1234555554442 3577899999999999999
Q ss_pred CHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHH
Q 004834 386 TPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 444 (728)
Q Consensus 386 t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~ 444 (728)
+.++....++..+ +.. ++.++++++..+++... .+.|.+.+.+++++
T Consensus 143 ~~~~l~~~l~~~~-----~~~-----g~~i~~~a~~~l~~~~~--gdl~~~~~elekl~ 189 (343)
T 1jr3_D 143 EQAQLPRWVAARA-----KQL-----NLELDDAANQVLCYCYE--GNLLALAQALERLS 189 (343)
T ss_dssp CTTHHHHHHHHHH-----HHT-----TCEECHHHHHHHHHSST--TCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHHhc--hHHHHHHHHHHHHH
Confidence 9999888777764 233 37899999999998654 46777777887776
No 99
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.60 E-value=2.2e-07 Score=95.70 Aligned_cols=152 Identities=18% Similarity=0.201 Sum_probs=87.9
Q ss_pred HhhhccccchHHHHHHHHHHHHhhccCCC-CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCcc
Q 004834 209 ERLDSDHYGLVRVKQRIIEYLAVRKLKPD-ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRR 287 (728)
Q Consensus 209 ~~L~~~i~G~~~vk~~i~~~l~~~~~~~~-~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~ 287 (728)
+.|.-.-|..-.+...+..++. .. ++..+++|+||||||||++|++||+.+.. .+.++.+..
T Consensus 77 ~~l~~qg~~~~~~~~~l~~~l~-----~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~~----------- 139 (267)
T 1u0j_A 77 KILELNGYDPQYAASVFLGWAT-----KKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTNE----------- 139 (267)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHT-----TCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTCS-----------
T ss_pred HHHHHcCCCHHHHHHHHHHHHh-----CCCCCCcEEEEECCCCCCHHHHHHHHHhhhcc-cceeecccc-----------
Confidence 3343333444444455554443 22 33457999999999999999999998654 343333210
Q ss_pred ccccCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC-
Q 004834 288 TYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA- 366 (728)
Q Consensus 288 ~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~- 366 (728)
.+ .+.... ..-+++.||..... +. +..+-.+++.... ..|....-+.....+-+|.|||..
T Consensus 140 ~f----------~l~~~~-~k~i~l~Ee~~~~~-d~----~~~lr~i~~G~~~--~id~K~k~~~~v~~tPvIitsN~~i 201 (267)
T 1u0j_A 140 NF----------PFNDCV-DKMVIWWEEGKMTA-KV----VESAKAILGGSKV--RVDQKCKSSAQIDPTPVIVTSNTNM 201 (267)
T ss_dssp SC----------TTGGGS-SCSEEEECSCCEET-TT----HHHHHHHHTTCCE--EC------CCEECCCCEEEEESSCT
T ss_pred cc----------cccccc-ccEEEEeccccchh-HH----HHHHHHHhCCCcE--EEecCcCCcccccCCCEEEEecCCc
Confidence 11 011111 12366667665543 33 6777777764321 112111222334556778888871
Q ss_pred ----------CCCChhhhCCeeEEEcC--------CCCHHHHHHHHH
Q 004834 367 ----------QPIPPPLLDRMEVIELP--------GYTPEEKLRIAM 395 (728)
Q Consensus 367 ----------~~l~~~Ll~R~~vI~~~--------~~t~ee~~~Il~ 395 (728)
+...++|.+|+.++.|+ +++.++....+.
T Consensus 202 ~~~~~g~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 202 CAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp TCEEETTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHH
T ss_pred ccccccCccchhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHH
Confidence 25568899999999998 678877777665
No 100
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.58 E-value=1e-07 Score=93.98 Aligned_cols=139 Identities=19% Similarity=0.201 Sum_probs=73.9
Q ss_pred cchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcc
Q 004834 216 YGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPG 295 (728)
Q Consensus 216 ~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g 295 (728)
+..-.....+..++. ..++..+++|+||||||||++|.++|+.+.... +.+....+ .+
T Consensus 39 ~~~~~f~~~l~~~~~-----~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i--~~fans~s---------~f------ 96 (212)
T 1tue_A 39 IEFITFLGALKSFLK-----GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV--ISFVNSTS---------HF------ 96 (212)
T ss_dssp CCHHHHHHHHHHHHH-----TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE--CCCCCSSS---------CG------
T ss_pred cCHHHHHHHHHHHHh-----cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCe--eeEEeccc---------hh------
Confidence 333444455555543 123345799999999999999999999984322 11111000 00
Q ss_pred hHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC---CCCChh
Q 004834 296 RLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA---QPIPPP 372 (728)
Q Consensus 296 ~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~---~~l~~~ 372 (728)
.+.... ...+++|||+|...... ....+..+||.... ..|.....+......-+|.|||.. +..-+.
T Consensus 97 ----~l~~l~-~~kIiiLDEad~~~~~~---~d~~lrn~ldG~~~--~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~ 166 (212)
T 1tue_A 97 ----WLEPLT-DTKVAMLDDATTTCWTY---FDTYMRNALDGNPI--SIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPY 166 (212)
T ss_dssp ----GGGGGT-TCSSEEEEEECHHHHHH---HHHHCHHHHHTCCE--EEC----CCEEECCCCEEEEESSCTTSSSSCHH
T ss_pred ----hhcccC-CCCEEEEECCCchhHHH---HHHHHHHHhCCCcc--cHHHhhcCccccCCCCEEEecCCCcccccchhh
Confidence 011111 13499999998542111 01234555554210 011111111222233567788873 344478
Q ss_pred hhCCeeEEEcCCCC
Q 004834 373 LLDRMEVIELPGYT 386 (728)
Q Consensus 373 Ll~R~~vI~~~~~t 386 (728)
|.+|+.++.|+.+-
T Consensus 167 L~SRi~~f~F~~~~ 180 (212)
T 1tue_A 167 LESRITVFEFPNAF 180 (212)
T ss_dssp HHTSCEEEECCSCC
T ss_pred hhhhEEEEEcCCCC
Confidence 99999999988553
No 101
>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis}
Probab=98.54 E-value=1.6e-07 Score=93.82 Aligned_cols=88 Identities=16% Similarity=0.298 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHccCChhHHHHHHHhcCCCCHHHHHHhhhccCHHHHHHHHHHHH
Q 004834 11 QDPDFIALSRQFKATAMELISVLEQKQKTGGRTKVLLETVPIHKLADIFVASFEISFEEQLVMLDSVDLKVRLSKATELV 90 (728)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~lLd~~~~~~r~~~~~~~l 90 (728)
.+.+.+++.+.+++.|++|++..+ ..+.+....+.+++||++|+|++|++++++++++|++|++.+...|+++.++.|
T Consensus 121 ~~~e~~al~~~l~~~~~~~~~~~~--~~~~e~~~~~~~~~dp~~lad~ia~~l~l~~~ekQ~lLe~~d~~~Rl~~l~~~L 198 (209)
T 3m65_A 121 KDTEDEALMRTLLDHFDQYIKISK--KISAETYAAVTDIEEPGRMADIVASHLPLKLKDKQDILETADVKDRLNKVIDFI 198 (209)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHTCCCHHHHHHHHHHHSCCCHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHccCCHHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455789999999999999998764 234566667789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 004834 91 DRHLQSIRVA 100 (728)
Q Consensus 91 ~~~~~~~~~e 100 (728)
+++++.++++
T Consensus 199 ~~E~e~~~l~ 208 (209)
T 3m65_A 199 NNEKEVLEIE 208 (209)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhhc
Confidence 9999999875
No 102
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.50 E-value=6.4e-07 Score=95.60 Aligned_cols=159 Identities=19% Similarity=0.265 Sum_probs=94.5
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc-----cchhhh------
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV-----KDEADI------ 282 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~-----~~~s~l------ 282 (728)
.++|.++..+.+.. +. . +.++++||+|+|||+|++.+++.++...+.+++.+. .+....
T Consensus 14 ~~~gR~~el~~L~~-l~-------~--~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (357)
T 2fna_A 14 DFFDREKEIEKLKG-LR-------A--PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQK 83 (357)
T ss_dssp GSCCCHHHHHHHHH-TC-------S--SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHH
T ss_pred HhcChHHHHHHHHH-hc-------C--CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHH
Confidence 57898887777766 42 1 589999999999999999999998777777777653 111110
Q ss_pred -------------------ccCccccc----------cCCcchHHHHHhhcCCCCcEEEEecccccCCCCCCCHHHHHHH
Q 004834 283 -------------------RGHRRTYI----------GSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLE 333 (728)
Q Consensus 283 -------------------~g~~~~yv----------G~~~g~l~~~~~~a~~~~~VlllDEidkl~~~~~~~~~~~Ll~ 333 (728)
.|...... ......+.+.+........+++|||++.+......+....|..
T Consensus 84 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~ 163 (357)
T 2fna_A 84 EINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAY 163 (357)
T ss_dssp HHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHH
T ss_pred HHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHH
Confidence 00000000 0111234444444321234889999999864211111344433
Q ss_pred hcCcccccccccCCCCeeecCCCcEEEEecCCC---------CCCChhhhCCe-eEEEcCCCCHHHHHHHHHHhh
Q 004834 334 VLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA---------QPIPPPLLDRM-EVIELPGYTPEEKLRIAMRHL 398 (728)
Q Consensus 334 ~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~---------~~l~~~Ll~R~-~vI~~~~~t~ee~~~Il~~~l 398 (728)
+++. ..++.+|+|++.. .....++..|+ ..+.+.+++.++..+++...+
T Consensus 164 ~~~~----------------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~ 222 (357)
T 2fna_A 164 AYDN----------------LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGF 222 (357)
T ss_dssp HHHH----------------CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHH
T ss_pred HHHc----------------CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHH
Confidence 4331 1234555655532 12334566676 589999999999998887754
No 103
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.46 E-value=8.8e-07 Score=94.37 Aligned_cols=180 Identities=14% Similarity=0.174 Sum_probs=101.8
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCcc------chhhh-----
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVK------DEADI----- 282 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~------~~s~l----- 282 (728)
.++|.+...+.+.+.+.. ++.++++||+|+|||+|++.+++..+ .+.+++.+.. +...+
T Consensus 13 ~~~gR~~el~~L~~~l~~--------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (350)
T 2qen_A 13 DIFDREEESRKLEESLEN--------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQ 82 (350)
T ss_dssp GSCSCHHHHHHHHHHHHH--------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHhc--------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHH
Confidence 578999988888887652 26899999999999999999998875 5556654321 11111
Q ss_pred --ccC-----------------ccccccCCcchHHHHHhhcC--CCCcEEEEecccccCCC---CCCCHHHHHHHhcCcc
Q 004834 283 --RGH-----------------RRTYIGSMPGRLIDGLKRVG--VCNPVMLLDEIDKTGSD---VRGDPASALLEVLDPE 338 (728)
Q Consensus 283 --~g~-----------------~~~yvG~~~g~l~~~~~~a~--~~~~VlllDEidkl~~~---~~~~~~~~Ll~~Ld~~ 338 (728)
.+. ...........+.+.+.... ....+++|||++.+... ...+....|..+++.
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~- 161 (350)
T 2qen_A 83 STISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS- 161 (350)
T ss_dssp HHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-
Confidence 000 00000011122333332211 01348999999998641 100012222223221
Q ss_pred cccccccCCCCeeecCCCcEEEEecCCC---------CCCChhhhCCe-eEEEcCCCCHHHHHHHHHHhhchHHHhhcCC
Q 004834 339 QNKTFNDHYLNVPFDLSKVIFVATANRA---------QPIPPPLLDRM-EVIELPGYTPEEKLRIAMRHLIPRVLDQHGL 408 (728)
Q Consensus 339 ~~~~~~d~~~~~~~d~~~vi~I~TtN~~---------~~l~~~Ll~R~-~vI~~~~~t~ee~~~Il~~~l~~~~~~~~~~ 408 (728)
..++.+|.|+... .....++..|+ ..+.+.+++.++..+++...+ ...+
T Consensus 162 ---------------~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~-----~~~~- 220 (350)
T 2qen_A 162 ---------------LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGF-----REVN- 220 (350)
T ss_dssp ---------------CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHH-----HTTT-
T ss_pred ---------------cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHH-----HHcC-
Confidence 1234555554332 12334566666 489999999999998887653 1222
Q ss_pred CccccccCHHHHHHHHHHccc
Q 004834 409 GSEFLQIPEAMVKLVIQRYTR 429 (728)
Q Consensus 409 ~~~~~~i~d~~l~~l~~~~~~ 429 (728)
..++++.+..+...+.+
T Consensus 221 ----~~~~~~~~~~i~~~tgG 237 (350)
T 2qen_A 221 ----LDVPENEIEEAVELLDG 237 (350)
T ss_dssp ----CCCCHHHHHHHHHHHTT
T ss_pred ----CCCCHHHHHHHHHHhCC
Confidence 34677777777665433
No 104
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.38 E-value=2.5e-06 Score=112.59 Aligned_cols=135 Identities=20% Similarity=0.241 Sum_probs=95.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCCcchHHHHHhhcCCCCcEEEEecccccCC
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGS 321 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~l~~~~~~a~~~~~VlllDEidkl~~ 321 (728)
+..+.||+|||||++++.+|+.+|++.+.++|+...+...+ |++...+.. .+...++||++++..
T Consensus 606 gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~------------g~i~~G~~~---~GaW~cfDEfNrl~~ 670 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAM------------SRIFVGLCQ---CGAWGCFDEFNRLEE 670 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHH------------HHHHHHHHH---HTCEEEEETTTSSCH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHH------------HHHHhhHhh---cCcEEEehhhhcCCH
Confidence 45789999999999999999999999999999886654321 333333333 245889999999987
Q ss_pred CCCCCHHHHHHHhcCcccc----cccccCCC-CeeecCC-CcEEEEecCCC----CCCChhhhCCeeEEEcCCCCHHHHH
Q 004834 322 DVRGDPASALLEVLDPEQN----KTFNDHYL-NVPFDLS-KVIFVATANRA----QPIPPPLLDRMEVIELPGYTPEEKL 391 (728)
Q Consensus 322 ~~~~~~~~~Ll~~Ld~~~~----~~~~d~~~-~~~~d~~-~vi~I~TtN~~----~~l~~~Ll~R~~vI~~~~~t~ee~~ 391 (728)
+. .+.+.+.+..-+. ..-.-.+. |..+.+. ++.|++|.|++ ..+|+.|.+||..|.+..|+.+...
T Consensus 671 ~v----LSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ 746 (3245)
T 3vkg_A 671 RI----LSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIA 746 (3245)
T ss_dssp HH----HHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHH
T ss_pred HH----HHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHHH
Confidence 66 6666665442111 00011122 3333333 46778899975 4899999999999999999998888
Q ss_pred HHHH
Q 004834 392 RIAM 395 (728)
Q Consensus 392 ~Il~ 395 (728)
+|+-
T Consensus 747 ei~L 750 (3245)
T 3vkg_A 747 QVML 750 (3245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 105
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.34 E-value=7.8e-07 Score=87.66 Aligned_cols=90 Identities=20% Similarity=0.279 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccchhhhccCccccccCCcch
Q 004834 220 RVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSMPGR 296 (728)
Q Consensus 220 ~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g~ 296 (728)
.+.+.+..++..... ...+.+++|+||||||||++|++++..+ +.++..+++.... ..+... +.......
T Consensus 36 ~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~ 108 (202)
T 2w58_A 36 KAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF--RELKHS---LQDQTMNE 108 (202)
T ss_dssp HHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH--HHHHHC------CCCHH
T ss_pred HHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH--HHHHHH---hccchHHH
Confidence 344555555443211 1123689999999999999999999988 4455555554321 111111 10001122
Q ss_pred HHHHHhhcCCCCcEEEEecccccC
Q 004834 297 LIDGLKRVGVCNPVMLLDEIDKTG 320 (728)
Q Consensus 297 l~~~~~~a~~~~~VlllDEidkl~ 320 (728)
+...+.. .++++|||++...
T Consensus 109 ~~~~~~~----~~~lilDei~~~~ 128 (202)
T 2w58_A 109 KLDYIKK----VPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHH----SSEEEEEEECCC-
T ss_pred HHHHhcC----CCEEEEcCCCCCc
Confidence 3333332 3599999997754
No 106
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.32 E-value=2.1e-07 Score=98.61 Aligned_cols=89 Identities=25% Similarity=0.403 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhC----CCeEEEecCCccchhhhccCccccccCCcc
Q 004834 220 RVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG----RKFIRISLGGVKDEADIRGHRRTYIGSMPG 295 (728)
Q Consensus 220 ~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~----~~~~~i~~~~~~~~s~l~g~~~~yvG~~~g 295 (728)
.+.+.+..++... +...+.+++|+||||||||+||.++|..+. .++..+++... ..++..... -|.. .
T Consensus 135 ~~~~~~~~~i~~~---~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l--~~~l~~~~~--~~~~-~ 206 (308)
T 2qgz_A 135 EAFSAILDFVEQY---PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF--AIDVKNAIS--NGSV-K 206 (308)
T ss_dssp HHHHHHHHHHHHC---SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH--HHHHHCCCC-------C
T ss_pred HHHHHHHHHHHhc---cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH--HHHHHHHhc--cchH-H
Confidence 3444444555432 112357899999999999999999998775 44444554322 112221110 0111 1
Q ss_pred hHHHHHhhcCCCCcEEEEecccccC
Q 004834 296 RLIDGLKRVGVCNPVMLLDEIDKTG 320 (728)
Q Consensus 296 ~l~~~~~~a~~~~~VlllDEidkl~ 320 (728)
.+...+.. .++|+|||++...
T Consensus 207 ~~~~~~~~----~~lLiiDdig~~~ 227 (308)
T 2qgz_A 207 EEIDAVKN----VPVLILDDIGAEQ 227 (308)
T ss_dssp CTTHHHHT----SSEEEEETCCC--
T ss_pred HHHHHhcC----CCEEEEcCCCCCC
Confidence 12223332 3599999997654
No 107
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.32 E-value=1.8e-06 Score=85.41 Aligned_cols=131 Identities=13% Similarity=0.170 Sum_probs=73.1
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHh--------C-CCeEEEecCCccchhhhccCcc-cc---ccC--CcchHHHHHhhcC
Q 004834 241 PVLCFVGPPGVGKTSLASSIASAL--------G-RKFIRISLGGVKDEADIRGHRR-TY---IGS--MPGRLIDGLKRVG 305 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l--------~-~~~~~i~~~~~~~~s~l~g~~~-~y---vG~--~~g~l~~~~~~a~ 305 (728)
.+.+++|+||+|||++|..++... | ++.+..++.+............ .+ .+. ....+.+.+..+.
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 478999999999999998875443 3 5665666665432110000000 11 111 1123333321122
Q ss_pred CCCcEEEEecccccCCCCC-CCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChhhhCCee-EEEcC
Q 004834 306 VCNPVMLLDEIDKTGSDVR-GDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRME-VIELP 383 (728)
Q Consensus 306 ~~~~VlllDEidkl~~~~~-~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~Ll~R~~-vI~~~ 383 (728)
..++|++|||++.+.+... +-....++..|+... -.+.-+|++++....++.++++|++ .+.+.
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r--------------~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~ 151 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR--------------HQGIDIFVLTQGPKLLDQNLRTLVRKHYHIA 151 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT--------------TTTCEEEEEESCGGGBCHHHHTTEEEEEEEE
T ss_pred cCceEEEEEChhhhccCccccchhHHHHHHHHhcC--------------cCCeEEEEECCCHHHHhHHHHHHhheEEEEc
Confidence 2357999999999954321 111123444443211 1233566777779999999999997 46666
Q ss_pred CC
Q 004834 384 GY 385 (728)
Q Consensus 384 ~~ 385 (728)
++
T Consensus 152 ~~ 153 (199)
T 2r2a_A 152 SN 153 (199)
T ss_dssp EC
T ss_pred Cc
Confidence 53
No 108
>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10
Probab=98.04 E-value=7.3e-06 Score=81.74 Aligned_cols=80 Identities=9% Similarity=0.022 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHh-----hccCCchHHHHHHHccCChhHHHHHHHhcCCCCHHHHHHhhhccCHHHHHHH
Q 004834 11 QDPDFIALSRQFKATAMELISVL-----EQKQKTGGRTKVLLETVPIHKLADIFVASFEISFEEQLVMLDSVDLKVRLSK 85 (728)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~lLd~~~~~~r~~~ 85 (728)
.+.+.+++++.+++.|++|.+.. +.. +. +.+++||++|+|.+|++++++++++|++|++ +...|++.
T Consensus 120 ~~~e~~al~~~l~~~~~~~~~~~~~~~~~~l--~~-----~~~~~dp~~lad~ia~~l~l~~~ekQ~lLe~-d~~~Rl~~ 191 (210)
T 1zbo_A 120 VPPELARSASALGRLIARLQREGVPPHIMPM--AA-----PFRLDDCGWVADRWAEMLSLPPADKARLLLL-PPLDRLRE 191 (210)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHTTCCTTTCSB--CS-----CCCTTCHHHHHHHHHHHSCCCHHHHHHHHHS-CHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhccccccccC--CC-----cCCCCCHHHHHHHHHHhCCCCHHHHHHHHhC-CHHHHHHH
Confidence 45688999999999999999875 211 11 4577899999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHH
Q 004834 86 ATELVDRHLQSIR 98 (728)
Q Consensus 86 ~~~~l~~~~~~~~ 98 (728)
.+..|++++..++
T Consensus 192 l~~~L~~e~~~~~ 204 (210)
T 1zbo_A 192 IDAVLAADGHALE 204 (210)
T ss_dssp HHHHHHC------
T ss_pred HHHHHHHHhhhhh
Confidence 9999999887764
No 109
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.01 E-value=6.6e-06 Score=79.88 Aligned_cols=25 Identities=44% Similarity=0.797 Sum_probs=22.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
.++|+||||+|||||++.|+..++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999999863
No 110
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.96 E-value=4e-06 Score=88.45 Aligned_cols=73 Identities=18% Similarity=0.303 Sum_probs=42.6
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCC--eEEEecCCccchhhhccCccccccCCcch---HHHHHhhcCCCCcEEE
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRK--FIRISLGGVKDEADIRGHRRTYIGSMPGR---LIDGLKRVGVCNPVML 312 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~--~~~i~~~~~~~~s~l~g~~~~yvG~~~g~---l~~~~~~a~~~~~Vll 312 (728)
+++..++|+||||||||+||.++|...+.+ |+.+...+..+ .|....... +.+.+.. .+ +++
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~---------~~~~~le~~l~~i~~~l~~---~~-LLV 187 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS---------GYNTDFNVFVDDIARAMLQ---HR-VIV 187 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSST---------TCBCCHHHHHHHHHHHHHH---CS-EEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhh---------hhhcCHHHHHHHHHHHHhh---CC-EEE
Confidence 345678999999999999999999875544 44442232211 111111112 2223332 22 999
Q ss_pred EecccccCCCC
Q 004834 313 LDEIDKTGSDV 323 (728)
Q Consensus 313 lDEidkl~~~~ 323 (728)
||+++.+....
T Consensus 188 IDsI~aL~~~~ 198 (331)
T 2vhj_A 188 IDSLKNVIGAA 198 (331)
T ss_dssp EECCTTTC---
T ss_pred Eeccccccccc
Confidence 99999986543
No 111
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.79 E-value=9.3e-05 Score=74.15 Aligned_cols=132 Identities=24% Similarity=0.235 Sum_probs=75.0
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCc--cc-hhhhccCc---cc---cccC--CcchHHHHHhhcCC
Q 004834 241 PVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGV--KD-EADIRGHR---RT---YIGS--MPGRLIDGLKRVGV 306 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~--~~-~s~l~g~~---~~---yvG~--~~g~l~~~~~~a~~ 306 (728)
..+++.|+|||||||++-.+|..+ |.....+++... .+ ...+.|.. +. |-|. .+..+..++..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~--- 83 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKA--- 83 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHH---
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHhc---
Confidence 368899999999999999999887 445444454321 11 11122211 11 1111 12345554543
Q ss_pred CCcEEEEecccccCCCC-C-CCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCC------------------
Q 004834 307 CNPVMLLDEIDKTGSDV-R-GDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA------------------ 366 (728)
Q Consensus 307 ~~~VlllDEidkl~~~~-~-~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~------------------ 366 (728)
...++++||+....... + ...+..+..+++ +++=++.|+|..
T Consensus 84 ~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~------------------sgidVitT~Nlqh~esl~d~v~~itg~~v~ 145 (228)
T 2r8r_A 84 APSLVLVDELAHTNAPGSRHTKRWQDIQELLA------------------AGIDVYTTVNVQHLESLNDQVRGITGVQVR 145 (228)
T ss_dssp CCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH------------------TTCEEEEEEEGGGBGGGHHHHHHHHSCCCC
T ss_pred CCCEEEEeCCCCCCcccchhHHHHHHHHHHHc------------------CCCCEEEEccccccccHHHHHHHHcCCCcC
Confidence 23599999988753321 1 111333333222 222355666632
Q ss_pred CCCChhhhCCeeEEEcCCCCHHHHHHH
Q 004834 367 QPIPPPLLDRMEVIELPGYTPEEKLRI 393 (728)
Q Consensus 367 ~~l~~~Ll~R~~vI~~~~~t~ee~~~I 393 (728)
+.+|+.++++.+-|.+-..+++++.+-
T Consensus 146 e~vpd~~~~~a~~v~lvD~~p~~l~~r 172 (228)
T 2r8r_A 146 ETLPDWVLQEAFDLVLIDLPPRELLER 172 (228)
T ss_dssp SCBCHHHHHTCSEEEEBCCCHHHHHHH
T ss_pred CcCccHHHhhCCeEEEecCCHHHHHHH
Confidence 488999999997677767778775544
No 112
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.75 E-value=3.2e-05 Score=97.59 Aligned_cols=82 Identities=21% Similarity=0.203 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccchhhhc----cC-ccccccC----CcchHHHHHhhcCC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIR----GH-RRTYIGS----MPGRLIDGLKRVGV 306 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~~s~l~----g~-~~~yvG~----~~g~l~~~~~~a~~ 306 (728)
+|..++++||||||||+||++++... +.+...|++.+..+ ++. |. ...|++. .+..+...+..+..
T Consensus 1081 ~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~--~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~ 1158 (1706)
T 3cmw_A 1081 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD--PIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1158 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC--HHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchH--HHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHh
Confidence 55679999999999999999998765 56677777765321 222 11 1345666 33445555543332
Q ss_pred -CCcEEEEecccccCCC
Q 004834 307 -CNPVMLLDEIDKTGSD 322 (728)
Q Consensus 307 -~~~VlllDEidkl~~~ 322 (728)
...++|+||++.+.|.
T Consensus 1159 ~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1159 GAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp TCCSEEEESCGGGCCCH
T ss_pred cCCeEEEeCchHhcCcc
Confidence 2349999999998886
No 113
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.66 E-value=4.4e-05 Score=74.76 Aligned_cols=24 Identities=42% Similarity=0.742 Sum_probs=22.3
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHh
Q 004834 241 PVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l 264 (728)
..++|+||+|+|||||++.++..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 468899999999999999999987
No 114
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.65 E-value=2.2e-05 Score=76.51 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
++...+++||||+||||++..++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999996666544
No 115
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.49 E-value=0.00021 Score=77.46 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=26.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRK 267 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~ 267 (728)
+++..++|+||||+||||++++++..++..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~ 196 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGGK 196 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCCc
Confidence 567799999999999999999999987543
No 116
>2pnl_A Protease VP4; acyl-enzyme, Ser/Lys DYAD, viral protease, substrate complex, product complex, hydrolase; 2.21A {Infectious pancreatic necrosis virus} PDB: 2pnm_A 3rbp_A 3r0b_A
Probab=97.42 E-value=0.00041 Score=65.52 Aligned_cols=72 Identities=26% Similarity=0.296 Sum_probs=55.7
Q ss_pred CCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCeEEEeeeCCCce-eeecCCHHHHHHHHHHcCCCee
Q 004834 604 LQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGL-VLPVGGVKDKILAAHRYGIKRV 679 (728)
Q Consensus 604 ~~~~di~i~~~~g~~~kdGpsaglaia~allSa~~~~~v~~~~a~tGEi~L~G~-V~~Vggi~~ki~~A~~~G~~~v 679 (728)
|.+.+|.|.= .-+-+..|+|+.+|+|++. ......+| +++|||||.=+|+ |.||-|+..|..+|++.|.+-|
T Consensus 101 ~~~~~i~v~~-~~~p~~~G~S~~LAial~~--~~i~k~IP-~~aFTGeI~edG~~I~pV~~i~~K~~iA~~~gL~LI 173 (203)
T 2pnl_A 101 KRNGNIVVEK-IFAGPIMGPSAQLGLSLLV--NDIEDGVP-RMVFTGEIADDEETIIPICGVDIAAIAAHEQGLPLI 173 (203)
T ss_dssp CTTSCEEEEE-CSSCCBCSSTTHHHHHHHH--HTCCSBCC-SSEECCEECTTSCBEECCSCHHHHHHHHHHTTCCEE
T ss_pred hcCCceEEee-ccCCcccCchHHHHHHHHH--hhhcccCC-CeEEEeEecCCCcEEEecCchhHHHHHHHHcCCeee
Confidence 4455555543 2223478999999999986 33333556 9999999999999 9999999999999999998644
No 117
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.35 E-value=0.00015 Score=69.31 Aligned_cols=35 Identities=14% Similarity=0.360 Sum_probs=30.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecC
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLG 274 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~ 274 (728)
+..++|+||||+||||+++.+++.++.+++.++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 45789999999999999999999999888776654
No 118
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.31 E-value=8.9e-05 Score=76.43 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=28.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCC-eEEEe
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRK-FIRIS 272 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~-~~~i~ 272 (728)
.++..++++||+|+||||++++++..+... ...+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~ 58 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII 58 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE
Confidence 567789999999999999999999988543 34443
No 119
>2gef_A Protease VP4; birnavirus, serine/lysine DYAD mechamism, lysine general base, hydrolase; 2.20A {Blotched snakehead virus}
Probab=97.31 E-value=0.00029 Score=66.55 Aligned_cols=58 Identities=29% Similarity=0.256 Sum_probs=49.0
Q ss_pred CCCCchhHHHHHHHHHHhccCCCCCCCeEEEeeeCCCceeeecCCHHHHHHHHHHcCCCeeeccc
Q 004834 619 PKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPE 683 (728)
Q Consensus 619 ~kdGpsaglaia~allSa~~~~~v~~~~a~tGEi~L~G~V~~Vggi~~ki~~A~~~G~~~viiP~ 683 (728)
+..|+|+.||+|++ +.+. .+| ++||||||+= |+|.||.|+..|..+|++.|.+ .|=|.
T Consensus 131 ~f~G~S~~LAIAl~--~~ik--~VP-~~AFTGeI~e-G~I~pV~gi~lK~eiA~knGL~-LIgp~ 188 (217)
T 2gef_A 131 AVAGQSSSIALALA--SSLP--FVP-KAAYTGCLSG-TNVQPVQFGNLKARAAHKIGLP-LVGMT 188 (217)
T ss_dssp CEESSTTHHHHHHH--HHCS--SCC-SSEEECEEET-TEEECBSCHHHHHHHHHTTTCC-EEECB
T ss_pred ccccchhHHHHHHH--Hhcc--CCC-CeeEeeeccc-ceEEecCchhHHHHHHHHcCCe-eeccc
Confidence 47799999999998 3333 555 9999999999 9999999999999999999975 44464
No 120
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.27 E-value=0.0002 Score=70.28 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=28.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
.++..++|+|||||||||+++.||+.++.+++.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~ 55 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFID 55 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 356789999999999999999999999887754
No 121
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.25 E-value=0.00021 Score=68.91 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=28.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeEEE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFIRI 271 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i 271 (728)
++.++|+|||||||||+++.+|+.++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 56899999999999999999999998887643
No 122
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.24 E-value=0.0012 Score=73.61 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 217 GLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 217 G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
+|..+...+..++.. ..+++++.||||||||+++..++..+
T Consensus 29 ~Q~~av~~~~~~i~~-------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 29 GQKNAFNIVMKAIKE-------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHHS-------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456666666665532 22389999999999999999999887
No 123
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.13 E-value=0.00026 Score=76.26 Aligned_cols=28 Identities=21% Similarity=0.423 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
++..++++||+|+||||+.++++..+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 4458999999999999999999998854
No 124
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.10 E-value=0.00028 Score=67.12 Aligned_cols=30 Identities=30% Similarity=0.592 Sum_probs=26.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
+..++|+||||+||||+++.+|..++.+++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 357899999999999999999999986544
No 125
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.04 E-value=0.00043 Score=65.49 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=26.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
.++|.||||+||||+++.|++.++.+++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~ 31 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIK 31 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeec
Confidence 58899999999999999999999877654
No 126
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.03 E-value=0.00064 Score=69.44 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=29.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEec
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 273 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~ 273 (728)
..+..++|+||||+||||+++.|++.++...+.++.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~ 65 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDG 65 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEec
Confidence 445689999999999999999999999765555543
No 127
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.01 E-value=0.00028 Score=68.28 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=28.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
.+|..++|+||||+||||+++.|+..++...+.++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~ 41 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFH 41 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEc
Confidence 45678999999999999999999987655554444
No 128
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.00 E-value=0.00045 Score=65.91 Aligned_cols=31 Identities=29% Similarity=0.502 Sum_probs=26.6
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKF 268 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~ 268 (728)
.++..++|+||||+||||+++.++..+|..+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~ 36 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAF 36 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEE
Confidence 4566899999999999999999999886543
No 129
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.99 E-value=0.00045 Score=66.54 Aligned_cols=30 Identities=37% Similarity=0.700 Sum_probs=26.8
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
+.++|+|+||+||||+|+.|++.++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 468999999999999999999999987654
No 130
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.98 E-value=0.00047 Score=66.19 Aligned_cols=31 Identities=45% Similarity=0.716 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
.++.++|+||||+||||+++.+++.++.+++
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~ 40 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYI 40 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEE
Confidence 4567999999999999999999999976654
No 131
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.97 E-value=0.00051 Score=67.34 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=26.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRK 267 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~ 267 (728)
.++..++|+||||+||||+++.|++.+|..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~ 56 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLE 56 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCe
Confidence 467799999999999999999999998643
No 132
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.96 E-value=0.00043 Score=66.17 Aligned_cols=29 Identities=34% Similarity=0.592 Sum_probs=25.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
.++|.||||+||||+++.||+.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58899999999999999999999876653
No 133
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.94 E-value=0.00044 Score=75.00 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=25.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
.++..++++||+|+||||++++++..+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 45678999999999999999999998854
No 134
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.94 E-value=0.00053 Score=66.27 Aligned_cols=32 Identities=25% Similarity=0.500 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
.+..++|.|+||+||||+++.+++.++.+++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 34578999999999999999999999866543
No 135
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.93 E-value=0.0029 Score=63.40 Aligned_cols=34 Identities=24% Similarity=0.210 Sum_probs=25.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEE
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRI 271 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i 271 (728)
.++..++++||||+||||++..++..+ +.....+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 456788999999999999998888666 3444444
No 136
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.92 E-value=0.00057 Score=72.85 Aligned_cols=78 Identities=22% Similarity=0.236 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCccccccCC--c-chHHHHHhhcCCC-CcEEEEe
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSM--P-GRLIDGLKRVGVC-NPVMLLD 314 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~~yvG~~--~-g~l~~~~~~a~~~-~~VlllD 314 (728)
++..++++||+|+|||||+++++..+......+.+.+.... .+..++ ..++.. . .....++..+-.. ++++++|
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~-~~~~~~-~~i~~~~ggg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI-VFKHHK-NYTQLFFGGNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCC-CCSSCS-SEEEEECBTTBCHHHHHHHHTTSCCSEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecc-ccccch-hEEEEEeCCChhHHHHHHHHhhhCCCEEEEc
Confidence 45689999999999999999999998766666665553211 111111 222221 1 1223334333333 3499999
Q ss_pred cccc
Q 004834 315 EIDK 318 (728)
Q Consensus 315 Eidk 318 (728)
|...
T Consensus 248 E~~~ 251 (330)
T 2pt7_A 248 ELRS 251 (330)
T ss_dssp CCCS
T ss_pred CCCh
Confidence 9764
No 137
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.91 E-value=0.0006 Score=65.93 Aligned_cols=32 Identities=38% Similarity=0.600 Sum_probs=27.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHH-hCCCeE
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASA-LGRKFI 269 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~-l~~~~~ 269 (728)
.++..++|+|+|||||||+++.+|+. ++.+++
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 35678999999999999999999998 665554
No 138
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.88 E-value=0.0013 Score=64.97 Aligned_cols=39 Identities=26% Similarity=0.504 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGV 276 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~ 276 (728)
.++..+.+.||||+|||||++.|+..+. .....+.+.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 5677899999999999999999999985 34667776654
No 139
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.88 E-value=0.00064 Score=65.85 Aligned_cols=31 Identities=26% Similarity=0.521 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
++..++|.||||+||||+++.+|+.++.+++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 38 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHL 38 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 4568999999999999999999999987654
No 140
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.88 E-value=0.00087 Score=65.59 Aligned_cols=33 Identities=33% Similarity=0.516 Sum_probs=28.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
..+..++|.||||+||||+++.|++.++.+++.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~ 50 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 445589999999999999999999999877543
No 141
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.87 E-value=0.00071 Score=64.12 Aligned_cols=32 Identities=31% Similarity=0.389 Sum_probs=27.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeEEE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFIRI 271 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i 271 (728)
-.+++|.|+|||||||+++.||+.++.+++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 35799999999999999999999999887643
No 142
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.86 E-value=0.00062 Score=65.26 Aligned_cols=31 Identities=39% Similarity=0.694 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
++..++|.|+||+||||+++.+++.++.+++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 3568999999999999999999999988765
No 143
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.84 E-value=0.0017 Score=64.02 Aligned_cols=38 Identities=32% Similarity=0.395 Sum_probs=30.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++++||||+|||++++.++...+.+...++...
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 56789999999999999999999984455555555443
No 144
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.83 E-value=0.028 Score=58.74 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
.++.+++|+||+|+||||++..+|..+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567999999999999999999998873
No 145
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.82 E-value=0.00055 Score=65.88 Aligned_cols=30 Identities=47% Similarity=0.811 Sum_probs=25.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
+..++|.||||+||||+++.+++.++.+++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 457899999999999999999999875543
No 146
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.81 E-value=0.0016 Score=67.80 Aligned_cols=36 Identities=33% Similarity=0.385 Sum_probs=28.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEec
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 273 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~ 273 (728)
..+..++|.||||+||||+++.++..++..+..++.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 345578999999999999999999988555555653
No 147
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.80 E-value=0.00083 Score=66.77 Aligned_cols=31 Identities=23% Similarity=0.532 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
++..++|.||||+||||+++.||+.++.+++
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i 33 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHL 33 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEE
Confidence 4568999999999999999999999986554
No 148
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.80 E-value=0.00076 Score=63.61 Aligned_cols=29 Identities=34% Similarity=0.557 Sum_probs=24.8
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
+.++|+||||+||||+++.+ +.++.+++.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 46899999999999999999 888776553
No 149
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.78 E-value=0.00096 Score=65.33 Aligned_cols=30 Identities=37% Similarity=0.566 Sum_probs=26.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
+..++|+||||+||||+++.|++.++..++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i 47 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFI 47 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEE
Confidence 457999999999999999999999976554
No 150
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.77 E-value=0.00075 Score=64.97 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
+..++|.||||+||||+++.|++.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999887
No 151
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.76 E-value=0.0022 Score=73.43 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.+.+++.||||||||+++.+++..+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999876
No 152
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.73 E-value=0.012 Score=67.36 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=36.0
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHH
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAS 262 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~ 262 (728)
.++|.+...+.+.+.+... ......++++||+|+|||+||+.+++
T Consensus 125 ~~vGR~~~l~~L~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKL----KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTS----TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred eecccHHHHHHHHHHHhcc----cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 5789999889888877532 13355899999999999999999864
No 153
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.72 E-value=0.0012 Score=63.27 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=29.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEe
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRIS 272 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~ 272 (728)
.++..++|.|++|+||||+++.++..+ |.+++.++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 346688999999999999999999998 77777665
No 154
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.72 E-value=0.00087 Score=64.65 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=25.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
+..++|.|+||+||||+++.+++.++.+++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 447899999999999999999999876543
No 155
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.71 E-value=0.0013 Score=64.50 Aligned_cols=28 Identities=32% Similarity=0.524 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
.++..+.|.||||+||||+++.|+..++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999999984
No 156
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.69 E-value=0.00095 Score=63.28 Aligned_cols=29 Identities=34% Similarity=0.650 Sum_probs=25.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
.++|.|+||+||||+++.+++.++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 58899999999999999999999876553
No 157
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.68 E-value=0.00097 Score=68.19 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=26.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRI 271 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i 271 (728)
.++++||||+||||+|+.||+.++..++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~ 32 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVAL 32 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEec
Confidence 578999999999999999999998766544
No 158
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.66 E-value=0.0011 Score=64.36 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=26.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
+..++|.||||+||||+++.+++.++.+++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i 41 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHL 41 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 457999999999999999999999985443
No 159
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.65 E-value=0.001 Score=66.42 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=26.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKF 268 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~ 268 (728)
.++++++|.||||+||+|.|+.||+.++.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h 57 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH 57 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCce
Confidence 3456888999999999999999999986543
No 160
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.64 E-value=0.001 Score=66.14 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
++..++|.||||+||||+++.||+.++.+++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 35 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLS 35 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEe
Confidence 34678999999999999999999999865543
No 161
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.62 E-value=0.0012 Score=66.12 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
++..++|.||||+||||+++.||+.++.+++
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i 36 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHL 36 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEE
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 4467999999999999999999999876554
No 162
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.61 E-value=0.0013 Score=70.29 Aligned_cols=54 Identities=20% Similarity=0.415 Sum_probs=39.1
Q ss_pred cchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEE
Q 004834 216 YGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRI 271 (728)
Q Consensus 216 ~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i 271 (728)
++.+.+.+.+...+..... ....++++|+||||+||||++++||+.++.+|+.+
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l 55 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTF 55 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeeee
Confidence 3456666777766654321 22345799999999999999999999998777543
No 163
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.60 E-value=0.0011 Score=66.96 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=34.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.++||+|+|||||+++|+..+......+.+.|
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 66 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDN 66 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECC
Confidence 57889999999999999999999999888888888776
No 164
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.60 E-value=0.0015 Score=65.67 Aligned_cols=32 Identities=28% Similarity=0.526 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
.+..++|.|+||+||||+++.||+.++.+++.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 44589999999999999999999999865543
No 165
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.58 E-value=0.0014 Score=62.99 Aligned_cols=30 Identities=27% Similarity=0.498 Sum_probs=26.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
+..++|.|+||+||||+++.+++.++.+++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i 35 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHL 35 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 347899999999999999999999986554
No 166
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.57 E-value=0.0016 Score=61.43 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=25.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
.++|.|+||+||||+++.+++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 57899999999999999999999877653
No 167
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.56 E-value=0.0011 Score=66.07 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
.+..++|.||||+||||+++.||+.++..++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 3457899999999999999999999986443
No 168
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.54 E-value=0.0014 Score=64.03 Aligned_cols=27 Identities=33% Similarity=0.613 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
+|..+.|+||+|+||||+++.|+..+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 577899999999999999999999863
No 169
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.54 E-value=0.0014 Score=66.94 Aligned_cols=31 Identities=35% Similarity=0.609 Sum_probs=28.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
+..+.|+||||+||||+++.||+.++.+++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 6689999999999999999999999887664
No 170
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.53 E-value=0.0017 Score=63.50 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=26.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
.+..++|.||||+||||+++.+++.++.+++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i 44 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHL 44 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEE
Confidence 3447899999999999999999999876444
No 171
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.53 E-value=0.0017 Score=65.68 Aligned_cols=30 Identities=30% Similarity=0.552 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKF 268 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~ 268 (728)
++..++|+||||+||||+++.|++.++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 457899999999999999999999987644
No 172
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.53 E-value=0.0011 Score=62.75 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=29.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++|.||+|+|||||+++|+..+ ..-..+.+.+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g 67 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPT 67 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECC
Confidence 567789999999999999999999998 4434444433
No 173
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.52 E-value=0.0015 Score=64.65 Aligned_cols=28 Identities=43% Similarity=0.763 Sum_probs=24.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
+++|.||||+||+|.|+.||+.++.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 5789999999999999999999876543
No 174
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.52 E-value=0.0016 Score=64.69 Aligned_cols=30 Identities=37% Similarity=0.705 Sum_probs=25.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
+..+.|.||||+||||+++.+++.++.+++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999999875443
No 175
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.52 E-value=0.0014 Score=70.36 Aligned_cols=39 Identities=33% Similarity=0.457 Sum_probs=35.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 276 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~ 276 (728)
.+|..+.|+||+|||||||.++||..+......|.+.|.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~ 66 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGK 66 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCE
Confidence 567899999999999999999999999888888888773
No 176
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.51 E-value=0.0017 Score=64.13 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=25.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRI 271 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i 271 (728)
.++|.||||+||||+++.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999987665543
No 177
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.50 E-value=0.00095 Score=63.58 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~ 263 (728)
.++|.||||+||||+++.+++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 6889999999999999999983
No 178
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.50 E-value=0.0024 Score=81.72 Aligned_cols=39 Identities=26% Similarity=0.395 Sum_probs=30.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGV 276 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~ 276 (728)
.++.+++|+||||||||+||.+++... |.....+++.+.
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 467799999999999999999998776 344555555543
No 179
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.50 E-value=0.0014 Score=67.44 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=33.5
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||+++|+..+......+.+.|
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g 67 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNG 67 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 57889999999999999999999998877778887766
No 180
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.50 E-value=0.0013 Score=66.08 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=33.5
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||+++|+..+......+.+.|
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 65 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEG 65 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 46789999999999999999999998877778887766
No 181
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.49 E-value=0.0017 Score=64.17 Aligned_cols=29 Identities=28% Similarity=0.566 Sum_probs=25.6
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
.+|..++|+||||+||||+++.|+..+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 46778999999999999999999988753
No 182
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.49 E-value=0.0018 Score=63.91 Aligned_cols=29 Identities=28% Similarity=0.427 Sum_probs=25.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
.++|.||||+||||+++.+++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIS 30 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEee
Confidence 47899999999999999999999766553
No 183
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.49 E-value=0.011 Score=67.25 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=82.2
Q ss_pred cchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHH----HhCCCe---EEEecCCcc--chhhh----
Q 004834 216 YGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAS----ALGRKF---IRISLGGVK--DEADI---- 282 (728)
Q Consensus 216 ~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~----~l~~~~---~~i~~~~~~--~~s~l---- 282 (728)
+|.+..++.|.+.+.... .....++.++|++|+|||+||+.+++ .....| .-+++++.. +...+
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 588888888888875331 22346889999999999999999996 333333 233444421 11111
Q ss_pred ---ccCccc--cccCC----cchHHHHHhhc-CCC-CcEEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCee
Q 004834 283 ---RGHRRT--YIGSM----PGRLIDGLKRV-GVC-NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVP 351 (728)
Q Consensus 283 ---~g~~~~--yvG~~----~g~l~~~~~~a-~~~-~~VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~ 351 (728)
.+.... ..... ...+...++.. ... .-+|+||.++... .+ .+..
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~---------~~--~~~~-------------- 262 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE---------TI--RWAQ-------------- 262 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH---------HH--HHHH--------------
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch---------hh--cccc--------------
Confidence 111100 00000 11223333332 122 3488899987731 11 1111
Q ss_pred ecCCCcEEEEecCCCCCCChhhhCCe-eEEEcCCCCHHHHHHHHHHh
Q 004834 352 FDLSKVIFVATANRAQPIPPPLLDRM-EVIELPGYTPEEKLRIAMRH 397 (728)
Q Consensus 352 ~d~~~vi~I~TtN~~~~l~~~Ll~R~-~vI~~~~~t~ee~~~Il~~~ 397 (728)
..+..+|.||...... . ..... .++.+++++.++-.+++..+
T Consensus 263 --~~gs~ilvTTR~~~v~-~-~~~~~~~~~~l~~L~~~ea~~Lf~~~ 305 (549)
T 2a5y_B 263 --ELRLRCLVTTRDVEIS-N-AASQTCEFIEVTSLEIDECYDFLEAY 305 (549)
T ss_dssp --HTTCEEEEEESBGGGG-G-GCCSCEEEEECCCCCHHHHHHHHHHT
T ss_pred --cCCCEEEEEcCCHHHH-H-HcCCCCeEEECCCCCHHHHHHHHHHH
Confidence 0234566777653311 1 11112 46999999999988888876
No 184
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.48 E-value=0.0041 Score=66.81 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=28.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEec
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 273 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~ 273 (728)
.+|.+++|+||+|+||||+++.||..+.....++.+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l 190 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 190 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEE
Confidence 356689999999999999999999988543334433
No 185
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.47 E-value=0.031 Score=61.58 Aligned_cols=83 Identities=17% Similarity=0.180 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccchh--------hhccCc--cccccCCcch-HHHHHhhc
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEA--------DIRGHR--RTYIGSMPGR-LIDGLKRV 304 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~~s--------~l~g~~--~~yvG~~~g~-l~~~~~~a 304 (728)
++.+++++||||+||||++..+|..+ +....-+.+..+...+ +..|.+ ..+.+..+.. +.+++..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999888 4445555554432211 111211 0111222212 23444444
Q ss_pred CC-CCcEEEEecccccCC
Q 004834 305 GV-CNPVMLLDEIDKTGS 321 (728)
Q Consensus 305 ~~-~~~VlllDEidkl~~ 321 (728)
.. ...++++|.....+.
T Consensus 179 ~~~~~DvVIIDTaGrl~~ 196 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKE 196 (443)
T ss_dssp HHTTCSEEEEECCCCSSC
T ss_pred HhCCCCEEEEECCCcccc
Confidence 32 245999998876553
No 186
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.47 E-value=0.0016 Score=62.72 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
++..+.|+||||+|||||++.|+..+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 466899999999999999999999864
No 187
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.47 E-value=0.0019 Score=65.86 Aligned_cols=32 Identities=34% Similarity=0.677 Sum_probs=27.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
.++..+.|.||+|+||||+++.||+.+|..++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 45678999999999999999999999986554
No 188
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.44 E-value=0.068 Score=58.73 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccch--------hhhccCccccc---cCCcch-HHHHHhh
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDE--------ADIRGHRRTYI---GSMPGR-LIDGLKR 303 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~~--------s~l~g~~~~yv---G~~~g~-l~~~~~~ 303 (728)
++.+++|+||||+||||++..+|..+ +....-+.+..+... .+..|.+ -|. +..+.. ...++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~-~~~~~~~~dp~~i~~~al~~ 174 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQ-VYGEPNNQNPIEIAKKGVDI 174 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCC-EECCTTCSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCc-eeeccccCCHHHHHHHHHHH
Confidence 45689999999999999999999888 444444444432211 1111211 111 111111 2344444
Q ss_pred cCC-CCcEEEEecccccC
Q 004834 304 VGV-CNPVMLLDEIDKTG 320 (728)
Q Consensus 304 a~~-~~~VlllDEidkl~ 320 (728)
+.. ...++++|.....+
T Consensus 175 a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 175 FVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp TTTTTCSEEEEEECCCSS
T ss_pred HHhcCCCEEEEECCCCcc
Confidence 442 23599999987665
No 189
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.43 E-value=0.0021 Score=65.16 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
++..++|.||||+||||+++.|++.++.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i 58 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL 58 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 4558999999999999999999999876554
No 190
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.43 E-value=0.0019 Score=62.89 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHh-CCCeEEEec
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASAL-GRKFIRISL 273 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l-~~~~~~i~~ 273 (728)
++..++|.||||+||||+++.+++.+ +.+++.+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 45689999999999999999999998 466665543
No 191
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.42 E-value=0.0018 Score=69.99 Aligned_cols=38 Identities=32% Similarity=0.471 Sum_probs=34.6
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|||||||.++||..+......+.+.|
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G 64 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE 64 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECC
Confidence 56789999999999999999999999988888888877
No 192
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.41 E-value=0.0019 Score=62.80 Aligned_cols=28 Identities=25% Similarity=0.585 Sum_probs=25.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
.++|.|+||+||||+++.|++.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 5789999999999999999999987544
No 193
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.40 E-value=0.0012 Score=67.19 Aligned_cols=38 Identities=24% Similarity=0.454 Sum_probs=32.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.++||+|+|||||+++|+..+......+.+.|
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 63 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDG 63 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 56778999999999999999999998876666676665
No 194
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.39 E-value=0.0017 Score=67.32 Aligned_cols=38 Identities=32% Similarity=0.437 Sum_probs=33.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||+++|+..+......+.+.|
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G 69 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDN 69 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECC
Confidence 46789999999999999999999998877778887766
No 195
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.38 E-value=0.0019 Score=63.60 Aligned_cols=28 Identities=29% Similarity=0.577 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
.+|..+.|+||+|+|||||+++|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5678999999999999999999999884
No 196
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.38 E-value=0.0018 Score=66.59 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=33.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||+++|+..+......+.+.|
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 85 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDG 85 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC
Confidence 57889999999999999999999998877778887766
No 197
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.37 E-value=0.0012 Score=64.86 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
++..++|.|+||+||||+++.+++.++.+++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~ 40 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVE 40 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCc
Confidence 46689999999999999999999988655443
No 198
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.37 E-value=0.0018 Score=66.39 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=33.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||.++|+..+......+.+.|
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g 68 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN 68 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 46789999999999999999999999877778887766
No 199
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.37 E-value=0.0021 Score=69.11 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=34.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|||||||.++||..+......+.+.|
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 64 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDD 64 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECC
Confidence 56789999999999999999999999888888888876
No 200
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.36 E-value=0.0014 Score=64.49 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=26.3
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
++..++|.|+||+||||+++.+++.++..++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~ 38 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGH 38 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4668999999999999999999998864433
No 201
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.35 E-value=0.0022 Score=69.11 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=34.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|||||||.++||..+......+.+.|
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 64 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDE 64 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECC
Confidence 56789999999999999999999999887788888876
No 202
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.35 E-value=0.0018 Score=63.31 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=25.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCC
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRK 267 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~ 267 (728)
+..++|.||||+||||+++.|++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4578999999999999999999998764
No 203
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.34 E-value=0.0019 Score=65.42 Aligned_cols=38 Identities=32% Similarity=0.541 Sum_probs=33.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||.+.|+..+......+.+.|
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 67 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 46789999999999999999999998877778888766
No 204
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.33 E-value=0.002 Score=66.58 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=33.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++|+||+|+|||||++.|+..+......|.+.|
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g 80 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDG 80 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECC
Confidence 57789999999999999999999999877778887766
No 205
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.33 E-value=0.0018 Score=63.21 Aligned_cols=27 Identities=30% Similarity=0.591 Sum_probs=24.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.+|..++|+||||+||||+++.|+..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999999887
No 206
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.32 E-value=0.0018 Score=63.52 Aligned_cols=28 Identities=43% Similarity=0.657 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
.++..++|+||||+||||+++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4567899999999999999999999884
No 207
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.32 E-value=0.002 Score=65.61 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=33.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||+++|+..+......+.+.|
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g 70 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG 70 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 46789999999999999999999999877778887766
No 208
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.31 E-value=0.0041 Score=65.26 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=28.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEec
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 273 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~ 273 (728)
.+|.+++|+||+|+||||+++.||..+.....++.+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l 133 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 133 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 456689999999999999999999988543344433
No 209
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.31 E-value=0.0018 Score=64.50 Aligned_cols=38 Identities=37% Similarity=0.563 Sum_probs=33.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||+++|+..+......+.+.+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 70 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG 70 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC
Confidence 46778999999999999999999998877778887766
No 210
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.31 E-value=0.0026 Score=64.17 Aligned_cols=30 Identities=37% Similarity=0.741 Sum_probs=26.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
+..+.+.||||+||||+++.||+.++.+++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 458999999999999999999999986543
No 211
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.30 E-value=0.0021 Score=65.79 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=33.6
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||.++|+..+...-..+.+.|
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 76 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG 76 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 57889999999999999999999998877778887766
No 212
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.30 E-value=0.0024 Score=69.03 Aligned_cols=38 Identities=34% Similarity=0.462 Sum_probs=34.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|||||||.++||..+......+.+.|
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 72 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGD 72 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECC
Confidence 56789999999999999999999999887888888876
No 213
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.30 E-value=0.0032 Score=60.57 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=26.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---CCCeEEEe
Q 004834 242 VLCFVGPPGVGKTSLASSIASAL---GRKFIRIS 272 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~ 272 (728)
.++|.|+||+||||+++.+++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999988 77766543
No 214
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.30 E-value=0.0023 Score=68.62 Aligned_cols=38 Identities=29% Similarity=0.467 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|||||||.++||..+......+.+.+
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 76 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGG 76 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Confidence 46789999999999999999999999887888888776
No 215
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.29 E-value=0.0015 Score=66.19 Aligned_cols=38 Identities=26% Similarity=0.503 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||+++|+..+......+.+.|
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 66 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG 66 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 57789999999999999999999988755555665543
No 216
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.29 E-value=0.0023 Score=62.76 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=23.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
.+.|+||||+||||+++.+++ +|.+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i 30 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV 30 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc
Confidence 588999999999999999998 776654
No 217
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.29 E-value=0.0026 Score=62.85 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=25.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
.++|.||||+||||+++.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~ 30 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS 30 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 47899999999999999999999766543
No 218
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.28 E-value=0.0031 Score=61.50 Aligned_cols=29 Identities=34% Similarity=0.674 Sum_probs=26.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
.+.+.||||+||||+++.+|+.++.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 78999999999999999999999876654
No 219
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.27 E-value=0.0044 Score=64.63 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=25.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
.++..+.+.||+|+||||+++.|+..+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45568999999999999999999999853
No 220
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.27 E-value=0.0029 Score=64.82 Aligned_cols=33 Identities=24% Similarity=0.432 Sum_probs=26.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHH---hCCCeEEEe
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASA---LGRKFIRIS 272 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~---l~~~~~~i~ 272 (728)
+..++|+|+||+||||+|+.++.. .|.+++.++
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 457899999999999999999998 455555333
No 221
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.26 E-value=0.0023 Score=64.43 Aligned_cols=38 Identities=37% Similarity=0.488 Sum_probs=32.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.++||+|+|||||.++|+..+...-..+.+.+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 69 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 69 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC
Confidence 46789999999999999999999999877777776654
No 222
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.25 E-value=0.0026 Score=64.47 Aligned_cols=37 Identities=27% Similarity=0.441 Sum_probs=32.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+ ..+.|+||+|+|||||.++|+..+......+.+.|
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 59 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG 59 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 45 78999999999999999999999877778888776
No 223
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.24 E-value=0.0023 Score=66.46 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=33.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++|+||+|+|||||++.|+..+......+.+.|
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 82 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFG 82 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECC
Confidence 46789999999999999999999999877778888766
No 224
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.23 E-value=0.0026 Score=68.76 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=34.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|||||||.++||..+......+.+.|
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 64 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGD 64 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECC
Confidence 46789999999999999999999999887788888876
No 225
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.23 E-value=0.0072 Score=59.16 Aligned_cols=27 Identities=37% Similarity=0.425 Sum_probs=24.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.++..+.+.||+|+||||+++.++..+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999999987
No 226
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.22 E-value=0.002 Score=69.02 Aligned_cols=38 Identities=34% Similarity=0.427 Sum_probs=34.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|||||||.++||.........+.+.+
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g 61 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDG 61 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECC
Confidence 56789999999999999999999999888888888876
No 227
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.22 E-value=0.002 Score=65.70 Aligned_cols=37 Identities=35% Similarity=0.605 Sum_probs=33.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++|+||+|+|||||.++|+..+... ..+.+.|
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g 60 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAG 60 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECC
Confidence 467899999999999999999999998777 8888776
No 228
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.22 E-value=0.0019 Score=62.13 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=22.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 004834 242 VLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
.++|.||||+||||+++.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999886
No 229
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.22 E-value=0.012 Score=59.35 Aligned_cols=31 Identities=29% Similarity=0.405 Sum_probs=25.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
.++++||+|+|||.++..++..++.+.+.+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~ 140 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 4889999999999999999888866555544
No 230
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.21 E-value=0.0019 Score=66.60 Aligned_cols=38 Identities=29% Similarity=0.488 Sum_probs=33.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||+++|+..+......+.+.|
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 72 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLG 72 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence 56889999999999999999999998877777777766
No 231
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.20 E-value=0.0026 Score=65.52 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=33.6
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||+++|+..+...-..+.+.|
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g 68 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG 68 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECC
Confidence 57789999999999999999999998877778887766
No 232
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.19 E-value=0.0024 Score=67.15 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
++..++|+||+|+||||+++.||..+.....++.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 5679999999999999999999999865555554444
No 233
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.18 E-value=0.0024 Score=61.80 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=22.8
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
..+.|+||+|+||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999999875
No 234
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.18 E-value=0.0027 Score=62.00 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=23.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
.+.++||||+||||+++.|++ ++.+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i 29 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVL 29 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEE
Confidence 588999999999999999999 765444
No 235
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.16 E-value=0.0081 Score=64.41 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=29.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLG 274 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~ 274 (728)
+++..++++||||+|||||+..++..+ +.+...++..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 567789999999999999999999876 3444455543
No 236
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.16 E-value=0.0039 Score=67.16 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=31.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..++++||+|+|||||+++++..+......+.+.+
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~ 210 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIED 210 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEES
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECC
Confidence 35678999999999999999999999876656665554
No 237
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.15 E-value=0.0032 Score=62.87 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=23.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCe
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKF 268 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~ 268 (728)
.++|.||||+||||+++.|++.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~ 28 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAH 28 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 478999999999999999999997544
No 238
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.15 E-value=0.0035 Score=64.49 Aligned_cols=35 Identities=34% Similarity=0.511 Sum_probs=32.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
|..+.++||+|+|||||.++|+..+ .....+.+.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g 64 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFING 64 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECC
Confidence 7899999999999999999999998 7788888876
No 239
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.14 E-value=0.01 Score=63.55 Aligned_cols=38 Identities=29% Similarity=0.350 Sum_probs=29.6
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~ 275 (728)
+++..++++||||+|||+|+..++..+ +.+...++...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 567899999999999999999998665 44555555543
No 240
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.14 E-value=0.0025 Score=67.30 Aligned_cols=32 Identities=38% Similarity=0.688 Sum_probs=27.2
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
..++++||||||||++++.||+.++..++..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEecc
Confidence 47899999999999999999999986555543
No 241
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.14 E-value=0.0025 Score=62.42 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
++..+.|+||+|+|||||++.|+..+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456789999999999999999999874
No 242
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.11 E-value=0.002 Score=69.17 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=34.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|||||||.++||.........+.+.|
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 66 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD 66 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Confidence 56789999999999999999999999887788888776
No 243
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.11 E-value=0.0045 Score=60.76 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
.++..++|+||+|+|||||++.|++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4677899999999999999999998864
No 244
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.10 E-value=0.0028 Score=63.09 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=24.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.+|..+.|+||+|+|||||++.|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 467789999999999999999999987
No 245
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.10 E-value=0.03 Score=69.47 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=36.8
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHH
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
.++|.++..+.+.+.+... ......+.++|++|+|||+||+.+++.
T Consensus 125 ~~vgR~~~~~~l~~~l~~~----~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKL----NGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTT----TTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred eeccHHHHHHHHHHHHhhc----cCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 5789999999998877532 133457889999999999999988764
No 246
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.10 E-value=0.0026 Score=62.48 Aligned_cols=35 Identities=29% Similarity=0.464 Sum_probs=27.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
.++..+.|.||+|+||||+++.|+..++.....+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 45668999999999999999999999864333333
No 247
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.09 E-value=0.0033 Score=61.11 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=25.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
.++..+.|.|+||+||||+++.|++. |.+++
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~~i 36 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-GYPVL 36 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-CCEEE
Confidence 34557999999999999999999997 65554
No 248
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.08 E-value=0.032 Score=58.54 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
.++.+++|+||+|+||||++..+|..+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 3456899999999999999999998873
No 249
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.06 E-value=0.0026 Score=61.44 Aligned_cols=24 Identities=33% Similarity=0.661 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHh
Q 004834 241 PVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l 264 (728)
..++|+||||+||||+++.|+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 468899999999999999999854
No 250
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.06 E-value=0.0037 Score=60.20 Aligned_cols=29 Identities=38% Similarity=0.700 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
.++..++|.|+||+||||+++.++..++.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 45668999999999999999999998853
No 251
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.05 E-value=0.005 Score=59.49 Aligned_cols=30 Identities=33% Similarity=0.494 Sum_probs=25.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---CCCeEEE
Q 004834 242 VLCFVGPPGVGKTSLASSIASAL---GRKFIRI 271 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l---~~~~~~i 271 (728)
.+.|.||||+||||+++.+++.+ |.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 47899999999999999999998 7776544
No 252
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.02 E-value=0.0041 Score=66.90 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=34.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||+++|+..+......+.+.|
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G 89 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG 89 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECC
Confidence 57889999999999999999999999888888888776
No 253
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.99 E-value=0.005 Score=61.86 Aligned_cols=32 Identities=25% Similarity=0.490 Sum_probs=27.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
.++..+.|.|+||+||||+++.+++.+|.+++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~ 45 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYL 45 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 45668999999999999999999999986554
No 254
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.99 E-value=0.0023 Score=67.99 Aligned_cols=33 Identities=24% Similarity=0.473 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEE
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRI 271 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i 271 (728)
+++.++|+||+|||||+|+..||+.++..++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~ 71 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINS 71 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEEC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcc
Confidence 445899999999999999999999987655543
No 255
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.98 E-value=0.0039 Score=62.24 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
.+|..++|+||+|+|||||.+.|+....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 5678999999999999999999999875
No 256
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.98 E-value=0.019 Score=55.97 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=26.5
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEe
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRIS 272 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~ 272 (728)
.++...+++||+|+||||.+..++..+ +.....+.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 446688999999999999988887765 45544443
No 257
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.97 E-value=0.12 Score=56.74 Aligned_cols=35 Identities=34% Similarity=0.421 Sum_probs=27.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecC
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLG 274 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~ 274 (728)
+.+++|+||||+||||++..+|..+ |.....+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4589999999999999999999887 3455555544
No 258
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.97 E-value=0.0097 Score=66.31 Aligned_cols=36 Identities=28% Similarity=0.340 Sum_probs=28.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEec
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 273 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~ 273 (728)
.+|.+++|+||+|+|||||++.||..+.....++.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l 326 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 326 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence 456689999999999999999999988543334433
No 259
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.95 E-value=0.0051 Score=67.50 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=28.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
.++..++++||+|+||||++++++..+......+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~ 199 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNIL 199 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEE
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEE
Confidence 45668999999999999999999999865443333
No 260
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.95 E-value=0.021 Score=55.79 Aligned_cols=119 Identities=15% Similarity=0.157 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCc---c----chhhhcc-----CccccccCCcc------h--
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGV---K----DEADIRG-----HRRTYIGSMPG------R-- 296 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~---~----~~s~l~g-----~~~~yvG~~~g------~-- 296 (728)
...+++++++|.||||+|-.+|-.. |.+...+.+--. . -...+ + ...+|.-..+. .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L-~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH-GVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG-TCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC-CcEEEEcccccccCCCCcHHHHHHHH
Confidence 3568899999999999999998554 455555543211 0 11111 1 00111111110 1
Q ss_pred --HHHHHhhc-CCCCcEEEEecccccCC-CCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCCCCChh
Q 004834 297 --LIDGLKRV-GVCNPVMLLDEIDKTGS-DVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPP 372 (728)
Q Consensus 297 --l~~~~~~a-~~~~~VlllDEidkl~~-~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~~l~~~ 372 (728)
+..+.+.. .....+|+|||+..+.+ +.- +.+.+++++... ..+.-+|.|+|.. |++
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l--~~~ev~~~l~~R---------------p~~~~vIlTGr~a---p~~ 166 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYL--PLEEVISALNAR---------------PGHQTVIITGRGC---HRD 166 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSS--CHHHHHHHHHTS---------------CTTCEEEEECSSC---CHH
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCC--CHHHHHHHHHhC---------------cCCCEEEEECCCC---cHH
Confidence 11111111 11235999999976422 111 156677777532 2334678898875 688
Q ss_pred hhCCeeE
Q 004834 373 LLDRMEV 379 (728)
Q Consensus 373 Ll~R~~v 379 (728)
|+...|.
T Consensus 167 l~e~AD~ 173 (196)
T 1g5t_A 167 ILDLADT 173 (196)
T ss_dssp HHHHCSE
T ss_pred HHHhCcc
Confidence 8887763
No 261
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.93 E-value=0.004 Score=63.93 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.++||+|+|||||+++|+..+. +...+.+.|
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~G~I~i~g 80 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGDIKIGG 80 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC-CEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC-CCeEEEECC
Confidence 5778999999999999999999998875 467777766
No 262
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.92 E-value=0.0057 Score=68.95 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=28.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEec
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 273 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~ 273 (728)
.+.+++++||+|+||||++++++..+......+.+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giiti 293 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSI 293 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEE
Confidence 45679999999999999999999988654444444
No 263
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.90 E-value=0.0031 Score=66.36 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=34.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||++.|+..+...-..|.+.|
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G 115 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDG 115 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECC
Confidence 57889999999999999999999999888888888776
No 264
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.88 E-value=0.0037 Score=61.95 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.++..++|+||||+|||||++.++..+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 567789999999999999999999865
No 265
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.88 E-value=0.0036 Score=68.06 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|||||||.++|+..+. ....|.+.+
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G 81 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDG 81 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECC
Confidence 5788999999999999999999999876 667777766
No 266
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.87 E-value=0.0046 Score=58.95 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=20.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHH
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSI 260 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~Lakal 260 (728)
.+|..++|+||||+|||||++++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 35778999999999999999973
No 267
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.86 E-value=0.0035 Score=63.95 Aligned_cols=38 Identities=32% Similarity=0.518 Sum_probs=30.5
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHH--hCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASA--LGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~--l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||++.|+.. +......+.+.|
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g 66 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDG 66 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECC
Confidence 46789999999999999999999986 333456666655
No 268
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.84 E-value=0.005 Score=60.89 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.+|..++|+||||+|||||++.++..+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999999665
No 269
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.83 E-value=0.0053 Score=60.72 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=24.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
+..+.|.|++|+||||+++.+++ +|.+++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~i 32 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVI 32 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEE
Confidence 35789999999999999999998 766544
No 270
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.82 E-value=0.0045 Score=62.19 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHH
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIAS 262 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~ 262 (728)
.+|..++|+||||+|||||+++++.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 5678999999999999999999993
No 271
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.79 E-value=0.0061 Score=59.56 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=25.9
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
..+.|+|++||||||+++.+++.+|.+++.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 368899999999999999999988866554
No 272
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.76 E-value=0.004 Score=64.98 Aligned_cols=37 Identities=35% Similarity=0.442 Sum_probs=30.6
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLG 274 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~ 274 (728)
.+|..+.|+||+|+|||||.++|+..+...-..+.+.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 98 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 98 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC
Confidence 5788999999999999999999998876555555544
No 273
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.74 E-value=0.0038 Score=62.49 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=18.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHH-HHhC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIA-SALG 265 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA-~~l~ 265 (728)
.+|..+.|+||+|+||||+++.|+ ..+.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 467789999999999999999999 8763
No 274
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.74 E-value=0.0052 Score=60.59 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=28.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhC----CCeEEEe
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALG----RKFIRIS 272 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~----~~~~~i~ 272 (728)
.++..++|.|+||+||||+++.+++.++ .+++.++
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 3566899999999999999999999875 3355444
No 275
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.73 E-value=0.0054 Score=62.32 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=25.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCC
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRK 267 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~ 267 (728)
+..+.+.||||+||||+|+.|++.++.+
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 3478999999999999999999998865
No 276
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.72 E-value=0.0065 Score=64.52 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=28.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
.+|..++|+||+|+||||+++.||..+.....++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~ 161 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVV 161 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEE
Confidence 45679999999999999999999998854333333
No 277
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.72 E-value=0.025 Score=68.19 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=42.4
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHH------hCCCeEEEecCCccc
Q 004834 214 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASA------LGRKFIRISLGGVKD 278 (728)
Q Consensus 214 ~i~G~~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~------l~~~~~~i~~~~~~~ 278 (728)
..+|.+..++.+.+.+... ...+.+.++||+|+|||+||+.+++. +.....-++++...+
T Consensus 129 ~~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d 194 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSS
T ss_pred CCCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCC
Confidence 3478888888888877531 23568999999999999999999853 233345556655433
No 278
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.71 E-value=0.0059 Score=64.09 Aligned_cols=27 Identities=37% Similarity=0.726 Sum_probs=25.5
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
++|..+.|+||+|+|||||+++|++.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 678899999999999999999999998
No 279
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.70 E-value=0.0045 Score=63.78 Aligned_cols=38 Identities=26% Similarity=0.429 Sum_probs=30.6
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh--CCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL--GRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l--~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||++.|+..+ ......+.+.|
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g 83 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 83 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC
Confidence 578899999999999999999999874 23346666655
No 280
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.70 E-value=0.0057 Score=61.90 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=26.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRK 267 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~ 267 (728)
.++..+.|.||+|+||||+++.|+..+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 456689999999999999999999988643
No 281
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.66 E-value=0.0067 Score=59.87 Aligned_cols=31 Identities=26% Similarity=0.509 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
+..+.|.|+||+||||+++.+++.++.+++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 3468999999999999999999999866543
No 282
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.66 E-value=0.0041 Score=60.98 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=27.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLG 274 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~ 274 (728)
.++..+.++||||+||||+++.|++.+. .+..++..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~-~~~~i~~D 54 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLP-NCSVISQD 54 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTST-TEEEEEGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC-CcEEEeCC
Confidence 3455889999999999999999998762 23344433
No 283
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.65 E-value=0.024 Score=64.23 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=45.0
Q ss_pred EEEEecccccCCCCCCCHHHHHHHhcCcccccccccCCCCeeecCCCcEEEEecCCCC--CCChhhhCCee-EEEcCCCC
Q 004834 310 VMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ--PIPPPLLDRME-VIELPGYT 386 (728)
Q Consensus 310 VlllDEidkl~~~~~~~~~~~Ll~~Ld~~~~~~~~d~~~~~~~d~~~vi~I~TtN~~~--~l~~~Ll~R~~-vI~~~~~t 386 (728)
|+++||+..+......+....|.++...+. .-++.+|++|.++. .++..+++-|. .|.|.-.+
T Consensus 346 vvVIDE~~~L~~~~~~~~~~~L~~Iar~GR--------------a~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s 411 (574)
T 2iut_A 346 VVVVDEFADMMMIVGKKVEELIARIAQKAR--------------AAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSS 411 (574)
T ss_dssp EEEESCCTTHHHHTCHHHHHHHHHHHHHCT--------------TTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSC
T ss_pred EEEEeCHHHHhhhhhHHHHHHHHHHHHHHh--------------hCCeEEEEEecCcccccccHHHHhhhccEEEEEcCC
Confidence 889999987754221112334444443221 12455666666665 78888888886 57888778
Q ss_pred HHHHHHHHH
Q 004834 387 PEEKLRIAM 395 (728)
Q Consensus 387 ~ee~~~Il~ 395 (728)
..+...|+.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 877766663
No 284
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.64 E-value=0.0079 Score=59.15 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=28.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
.+++.+.||+|||||++++.+|+.+|.+|+.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 4689999999999999999999999998873
No 285
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.62 E-value=0.012 Score=67.73 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
++.+++.||||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 4679999999999999988887665
No 286
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.61 E-value=0.0057 Score=64.07 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
.++.++++||+|+|||+|+..+|+.++..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis 40 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELIS 40 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEE
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEe
Confidence 34578899999999999999999998654433
No 287
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.60 E-value=0.026 Score=60.58 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=30.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~ 275 (728)
+++..++++||||+|||++|..+|..+ +.+...++...
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 467789999999999999999998765 45566666543
No 288
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.60 E-value=0.0061 Score=62.25 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=30.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
.+|..+.|+||+|+|||||.++|+..+......+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 63 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 46789999999999999999999998876666665
No 289
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.53 E-value=0.0066 Score=63.99 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=25.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
.+|..+.+.||+|+|||||++.|+..+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 56678999999999999999999999853
No 290
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.50 E-value=0.023 Score=71.32 Aligned_cols=38 Identities=24% Similarity=0.415 Sum_probs=33.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
++|..+.++||+|+|||||++.|.+.....-+.+.++|
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG 479 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDG 479 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCC
Confidence 35678999999999999999999999988878777665
No 291
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.49 E-value=0.0072 Score=77.44 Aligned_cols=83 Identities=24% Similarity=0.354 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCCccchhhhc--cCc-ccc------ccCCcchHHHHHhhcC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIR--GHR-RTY------IGSMPGRLIDGLKRVG 305 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~~s~l~--g~~-~~y------vG~~~g~l~~~~~~a~ 305 (728)
+++.+++|+||||||||+||.+++... |.+...+++.+..+.-... |-. ..+ .+.....+...+.+..
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~~ 1158 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1158 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHhC
Confidence 567799999999999999999998654 5566666666532211100 000 000 1111233444444332
Q ss_pred CCCcEEEEecccccCC
Q 004834 306 VCNPVMLLDEIDKTGS 321 (728)
Q Consensus 306 ~~~~VlllDEidkl~~ 321 (728)
...++++|++..+.+
T Consensus 1159 -~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1159 -AVDVIVVDSVAALTP 1173 (2050)
T ss_dssp -CCSEEEESCGGGCCC
T ss_pred -CCCEEEECCcccccc
Confidence 245999999999965
No 292
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.47 E-value=0.0068 Score=60.57 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHH
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
+++..++|+||||+|||+|++.++..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 56789999999999999999999985
No 293
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.46 E-value=0.0081 Score=59.46 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHH
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
+|..+.|+||+|+|||||+++|+..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999987
No 294
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.45 E-value=0.0056 Score=64.26 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=24.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKF 268 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~ 268 (728)
++.+++.||+|+|||+|+..+|+.++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~i 31 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEV 31 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEE
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccce
Confidence 45788999999999999999999886433
No 295
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.45 E-value=0.02 Score=60.42 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=28.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCC-----CeEEEecCCc
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGR-----KFIRISLGGV 276 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~-----~~~~i~~~~~ 276 (728)
+..+.+.||+||||||+++.|+..+.. ....+.+.++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 347889999999999999999999863 3445555553
No 296
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.013 Score=56.19 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.+...++++|++|+|||+|+.++...-
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455689999999999999999998643
No 297
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.38 E-value=0.0082 Score=63.09 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
.++..+.|+||+|+||||+++.|+..+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4566899999999999999999999886
No 298
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.31 E-value=0.0095 Score=61.93 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=25.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
.+|..++|+||||+|||||++.+|..+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5778999999999999999999998873
No 299
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.29 E-value=0.033 Score=60.00 Aligned_cols=38 Identities=32% Similarity=0.398 Sum_probs=30.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~ 275 (728)
+++..++++||||+|||++|..+|..+ +.+...++...
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 567789999999999999999998765 45666666554
No 300
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.21 E-value=0.079 Score=52.41 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=26.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEe
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRIS 272 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~ 272 (728)
.++...+++||.|+||||.+..++... +.....+.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 456678899999999999988887655 45555444
No 301
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.19 E-value=0.0062 Score=58.34 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=28.1
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCC---eEEEecCC
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRK---FIRISLGG 275 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~---~~~i~~~~ 275 (728)
+.+.++||+|+|||||++.|+..+... ...+.+.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 468899999999999999999998544 66777665
No 302
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.18 E-value=0.017 Score=57.73 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.+|..++++||||+|||+++..++...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 567799999999999999998887654
No 303
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.18 E-value=0.013 Score=56.85 Aligned_cols=26 Identities=27% Similarity=0.598 Sum_probs=22.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCe
Q 004834 243 LCFVGPPGVGKTSLASSIASALGRKF 268 (728)
Q Consensus 243 lLL~GPpGtGKT~LakalA~~l~~~~ 268 (728)
++|+||||+|||||++.|.......+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 77999999999999999988764433
No 304
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.18 E-value=0.011 Score=59.32 Aligned_cols=29 Identities=31% Similarity=0.548 Sum_probs=25.6
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
.++..++|.||||+||||+++.|++.++.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 35668899999999999999999999964
No 305
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.17 E-value=0.0097 Score=61.35 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.++|+||+|+|||||.++|+.........+.+.|
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g 37 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNRE 37 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC----------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCC
Confidence 5789999999999999999999866655555544
No 306
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.16 E-value=0.014 Score=64.49 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 276 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~ 276 (728)
.+|..++|+||+|||||||++.|++........+.+.|.
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 678899999999999999999999999877777776664
No 307
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.16 E-value=0.012 Score=61.26 Aligned_cols=39 Identities=15% Similarity=0.390 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecCCcc
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVK 277 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~~~~ 277 (728)
++..+.+.||+|+||||+++.+++.++ .....+++..++
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 456899999999999999999999875 345667766654
No 308
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.16 E-value=0.0048 Score=60.53 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=24.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
.++|.||||+||||+++.|++.++...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~ 29 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGR 29 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 4789999999999999999999864433
No 309
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.10 E-value=0.01 Score=63.17 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=27.0
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
..+++.||+|+|||++|+.||..++. ..+++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~--~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNG--EIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTE--EEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCC--ceecccc
Confidence 47889999999999999999999873 4455444
No 310
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.08 E-value=0.0088 Score=65.68 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRK 267 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~ 267 (728)
.+..++|+||||+||||+|+.+++.++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~ 285 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYV 285 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcE
Confidence 45689999999999999999999887543
No 311
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.07 E-value=0.013 Score=60.76 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=23.1
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKF 268 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~ 268 (728)
..+.|.|+||+||||+++.++ .+|.++
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~ 102 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYI 102 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEE
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcE
Confidence 378999999999999999999 466544
No 312
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.02 E-value=0.42 Score=52.50 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=29.6
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHh----CCCeEEEecCCc
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASAL----GRKFIRISLGGV 276 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l----~~~~~~i~~~~~ 276 (728)
++.+++++|++|+||||++-.+|..+ |....-+++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 34588899999999999999999877 455666666543
No 313
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.02 E-value=0.01 Score=61.64 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHh
Q 004834 241 PVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l 264 (728)
..++|.||||+||||+++.+++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 368899999999999999999864
No 314
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.01 E-value=0.013 Score=60.52 Aligned_cols=27 Identities=37% Similarity=0.587 Sum_probs=24.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.++..++|+||||+|||||++.++..+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999765
No 315
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.00 E-value=0.018 Score=61.64 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=31.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.|+||+|+|||||.+.|++........+.+.|
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G 106 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIG 106 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEec
Confidence 57889999999999999999999999877666555443
No 316
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.94 E-value=0.011 Score=57.79 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
.+..++|.||||+|||+||..+++..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 456799999999999999999998764
No 317
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.86 E-value=0.02 Score=65.82 Aligned_cols=75 Identities=9% Similarity=0.015 Sum_probs=51.2
Q ss_pred CcccEEEEccCCCCCCCCchhHHHHHHHHHHhccC-CCCCCCeEEEeeeCCCceeeecCCHHHHHHHH---HHcCCCeee
Q 004834 605 QGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSR-KRVRADTAMTGEMTLRGLVLPVGGVKDKILAA---HRYGIKRVI 680 (728)
Q Consensus 605 ~~~di~i~~~~g~~~kdGpsaglaia~allSa~~~-~~v~~~~a~tGEi~L~G~V~~Vggi~~ki~~A---~~~G~~~vi 680 (728)
.+..+.||.--|.++.|+-.+.+=+ --+.++.. .-.|++.++.+=+-+ -..-.|-+|-+.-| +..|++++|
T Consensus 445 ~~~~lll~pl~G~tk~~di~~~~r~--~~~~~~~~~~y~p~~~~~l~~~p~---~mryaGPrEa~~hai~rkN~Gcth~I 519 (630)
T 1x6v_B 445 RRPVLLLHPLGGWTKDDDVPLMWRM--KQHAAVLEEGVLNPETTVVAIFPS---PMMYAGPTEVQWHCRARMVAGANFYI 519 (630)
T ss_dssp SSEEEEEEEBCSCCCTTSCCHHHHH--HHHHHHHHTTSSCGGGEEECCBCC---CCCCCHHHHHHHHHHHHHHTTCSEEE
T ss_pred CCCcEEEEeCcCCCCCCCCCHHHHH--HHHHHHHHcCCCCCcceEEeeccc---hhhhcCcHHHHHHHHHHHhCCCCeEE
Confidence 3445889987787777775555543 33455554 356777777765544 35578899987755 579999999
Q ss_pred cccc
Q 004834 681 LPER 684 (728)
Q Consensus 681 iP~~ 684 (728)
|-.+
T Consensus 520 VGrd 523 (630)
T 1x6v_B 520 VGRD 523 (630)
T ss_dssp ECSS
T ss_pred ECCC
Confidence 9654
No 318
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.84 E-value=0.011 Score=64.01 Aligned_cols=29 Identities=28% Similarity=0.519 Sum_probs=25.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKF 268 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~ 268 (728)
.+.+++.||+|+|||+|+..||..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~i 30 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEV 30 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEE
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeE
Confidence 34688999999999999999999997543
No 319
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.78 E-value=0.055 Score=59.44 Aligned_cols=91 Identities=19% Similarity=0.119 Sum_probs=48.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCccchhhhccCcc--cc-c--cCCcchHHHHHhhcCCC----C
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRR--TY-I--GSMPGRLIDGLKRVGVC----N 308 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~~~~s~l~g~~~--~y-v--G~~~g~l~~~~~~a~~~----~ 308 (728)
...+..++.|+||||||++.+.++.. .+...+..+.. ...++...-. +. . ......+...+...... .
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~~--~~~lVlTpT~~-aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~ 235 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVNF--EEDLILVPGRQ-AAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQF 235 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCCT--TTCEEEESCHH-HHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhcc--CCeEEEeCCHH-HHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcC
Confidence 44557889999999999999887642 33444443321 1122211000 00 0 01112233333332211 3
Q ss_pred cEEEEecccccCCCCCCCHHHHHHHhc
Q 004834 309 PVMLLDEIDKTGSDVRGDPASALLEVL 335 (728)
Q Consensus 309 ~VlllDEidkl~~~~~~~~~~~Ll~~L 335 (728)
.++++||+-.++... ...++..+
T Consensus 236 d~liiDE~sm~~~~~----l~~l~~~~ 258 (446)
T 3vkw_A 236 KRLFIDEGLMLHTGC----VNFLVEMS 258 (446)
T ss_dssp SEEEEETGGGSCHHH----HHHHHHHT
T ss_pred CEEEEeCcccCCHHH----HHHHHHhC
Confidence 599999999886544 45555554
No 320
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.74 E-value=0.016 Score=66.48 Aligned_cols=38 Identities=29% Similarity=0.414 Sum_probs=33.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.++||+|+|||||++.+++.+.+..+.+.+.|
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g 404 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECC
Confidence 45678999999999999999999999888888888776
No 321
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.71 E-value=0.057 Score=60.53 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHH
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
+++|+++.|+||+|||++++++...
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILS 190 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998753
No 322
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.70 E-value=0.02 Score=57.45 Aligned_cols=29 Identities=34% Similarity=0.495 Sum_probs=25.5
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCeE
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKFI 269 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~~ 269 (728)
..+.|.||||+||||+++.|++.++.+.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~i 37 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQI 37 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCee
Confidence 35789999999999999999999976654
No 323
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.67 E-value=0.016 Score=66.56 Aligned_cols=38 Identities=34% Similarity=0.503 Sum_probs=33.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.++||+|+|||||++.+++...+.-+.+.+.|
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g 405 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDG 405 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECC
Confidence 46778999999999999999999999888788888776
No 324
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.66 E-value=0.017 Score=66.19 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=33.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.++||+|+|||||++.+++...+.-+.+.+.|
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 404 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDG 404 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECC
Confidence 46778999999999999999999999877777777766
No 325
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=94.64 E-value=0.036 Score=46.64 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=42.9
Q ss_pred cCCCCHHHHHHHHHHhhchHHHhhcCCCccccccCHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 382 LPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 382 ~~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
-.+|+.++|.+|++.++.+.. +. ++..+..|++.+.+.+| ++|.++|+.|++.++++
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~----------l~-~dvdl~~LA~~T~G~SG-----ADL~~l~~eAa~~alr~ 64 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMN----------LT-RGINLRKIAELMPGASG-----AEVKGVCTEAGMYALRE 64 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSE----------EC-TTCCCHHHHHTCSSCCH-----HHHHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHcCCC----------CC-cccCHHHHHHHcCCCCH-----HHHHHHHHHHHHHHHHH
Confidence 368999999999999864211 11 12225677777777888 89999999999999986
No 326
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.64 E-value=0.087 Score=59.03 Aligned_cols=37 Identities=35% Similarity=0.426 Sum_probs=28.5
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecCC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGG 275 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~~ 275 (728)
++.+++|+|+||+||||++..||..+ |.....+++..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 34589999999999999999999877 55566666543
No 327
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.57 E-value=0.021 Score=54.44 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=23.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
..+|+||+|+||||++++|+..++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 7889999999999999999998853
No 328
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.56 E-value=0.015 Score=55.57 Aligned_cols=33 Identities=24% Similarity=0.147 Sum_probs=26.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEe
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALG---RKFIRIS 272 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~ 272 (728)
.+.+.|.|++|+||||++..++..+. .....+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 45789999999999999999998873 3444444
No 329
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.55 E-value=0.029 Score=59.27 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=24.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
+++..++++||||+|||+++..+|...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 567799999999999999999999875
No 330
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.52 E-value=0.019 Score=66.06 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.++||+|+|||||++.+++.....-+.+.+.|
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 416 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDG 416 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECC
Confidence 46778999999999999999999999988888888776
No 331
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.48 E-value=0.014 Score=63.83 Aligned_cols=49 Identities=14% Similarity=0.092 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEE
Q 004834 219 VRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRI 271 (728)
Q Consensus 219 ~~vk~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i 271 (728)
.++...+.+++.... ..+..+.|+||||+|||||.++|+......-+.+
T Consensus 52 ~~~~~~i~~~L~~~~----~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI 100 (413)
T 1tq4_A 52 QLTNSAISDALKEID----SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAA 100 (413)
T ss_dssp HHHHHHHHHHHHHHH----HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSC
T ss_pred cccchhhhhhhhhcc----cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceE
Confidence 344455666555443 2455899999999999999999998664433333
No 332
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.47 E-value=0.021 Score=57.09 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=27.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
..++.+.|++|||||++++.+|+.++.+++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 4579999999999999999999999988753
No 333
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.38 E-value=0.41 Score=49.74 Aligned_cols=36 Identities=31% Similarity=0.313 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEecC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLG 274 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~~ 274 (728)
++..++++||+|+||||++..+|..+ +.....+++.
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 35688899999999999999999887 3444444433
No 334
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.37 E-value=0.033 Score=59.21 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
.++..+.|+||||+|||||.++++..+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 5677899999999999999999998873
No 335
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.36 E-value=0.039 Score=55.09 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=27.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh----CCCeEEEec
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL----GRKFIRISL 273 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l----~~~~~~i~~ 273 (728)
++|..++++|+||+|||++|..+|... +.+...+++
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 567799999999999999998876432 445555544
No 336
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.36 E-value=0.071 Score=55.98 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
+++ .++++||||+|||+|+..++...
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 456 78999999999999988776554
No 337
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=94.35 E-value=0.061 Score=44.08 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHhhchHHHhhcCCCcccccc-CHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHH
Q 004834 383 PGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQI-PEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQ 454 (728)
Q Consensus 383 ~~~t~ee~~~Il~~~l~~~~~~~~~~~~~~~~i-~d~~l~~l~~~~~~~~G~R~L~~~I~~l~r~a~~~~~~~ 454 (728)
|.|+.++|.+|++.++.+ +.+ ++..+..|++.+.+.+| ++|.++|+.|++.++++
T Consensus 1 plPd~~~R~~Il~~~l~~------------~~~~~~~dl~~la~~t~G~SG-----ADi~~l~~eA~~~a~~~ 56 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRK------------MNLTRGINLRKIAELMPGASG-----AEVKGVCTEAGMYALRE 56 (78)
T ss_dssp CCCCHHHHHHHHHHHHTT------------SEECTTCCHHHHHHTCTTCCH-----HHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHhcC------------CCCCCccCHHHHHHHcCCCCH-----HHHHHHHHHHHHHHHHh
Confidence 568999999999988632 111 23346778887777888 89999999999999876
No 338
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.27 E-value=0.018 Score=61.62 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
++|..+.|+||||+|||||++.++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999999876
No 339
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.27 E-value=0.015 Score=66.57 Aligned_cols=38 Identities=29% Similarity=0.438 Sum_probs=34.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.++||+|+|||||++.+++.+.+.-+.+.+.|
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 402 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDG 402 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECC
Confidence 46778999999999999999999999988888888877
No 340
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.26 E-value=0.026 Score=54.08 Aligned_cols=25 Identities=40% Similarity=0.595 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.+.++|.||+|+||||+++.+...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999999876
No 341
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.15 E-value=0.041 Score=58.63 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
+++..++++||||+|||+++..+|...
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567789999999999999999999873
No 342
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.09 E-value=0.021 Score=63.49 Aligned_cols=27 Identities=37% Similarity=0.543 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.+|+.++++||+|+|||||++.|+..+
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 478899999999999999999999887
No 343
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.07 E-value=0.021 Score=61.35 Aligned_cols=29 Identities=17% Similarity=0.349 Sum_probs=25.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKF 268 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~ 268 (728)
+..+.++||+|+|||||++.|+..+....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 56799999999999999999999986544
No 344
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.01 E-value=0.11 Score=55.58 Aligned_cols=36 Identities=22% Similarity=0.478 Sum_probs=27.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEec
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISL 273 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~ 273 (728)
...+.++|+|+||+||||++..++..+ +.....+++
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 345689999999999999999999887 444444443
No 345
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.97 E-value=0.022 Score=65.38 Aligned_cols=39 Identities=21% Similarity=0.409 Sum_probs=34.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 276 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~ 276 (728)
.+|..+.++||+|+|||||++.+++.+...-..+.+.|.
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~ 405 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDEL 405 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCE
Confidence 457789999999999999999999999888888887773
No 346
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.95 E-value=0.041 Score=63.84 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=17.8
Q ss_pred CEEEEEcCCCCChhHHHHH-HHHHh
Q 004834 241 PVLCFVGPPGVGKTSLASS-IASAL 264 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~Laka-lA~~l 264 (728)
+..|+.||||||||+++-. |+..+
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999976544 44444
No 347
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.92 E-value=0.056 Score=61.73 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=28.6
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhC----CCeEEEe
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALG----RKFIRIS 272 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~----~~~~~i~ 272 (728)
.+..++|.|+||+||||+|+.|++.++ .+++.++
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 445789999999999999999999986 5666665
No 348
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.89 E-value=0.026 Score=56.00 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
+|..+.|.||+|+||||+++.+++.+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4667889999999999999999999854
No 349
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.87 E-value=0.024 Score=63.16 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=29.4
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
..+.|+||+|+|||||+++|+..+......+.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 64 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN 64 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence 78999999999999999999999876555555554
No 350
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.83 E-value=0.022 Score=59.54 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=24.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEec
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 273 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~ 273 (728)
+..+.|+||||+|||||.++|+.........+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 5678999999999999999999877665555554
No 351
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.77 E-value=0.02 Score=64.99 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=25.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
.++..+.|+||+|+||||++++||..++.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 35678999999999999999999999864
No 352
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.77 E-value=0.17 Score=49.16 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=26.0
Q ss_pred CCCEEEEEcCCCCChh-HHHHHHHHHh--CCCeEEEe
Q 004834 239 RGPVLCFVGPPGVGKT-SLASSIASAL--GRKFIRIS 272 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT-~LakalA~~l--~~~~~~i~ 272 (728)
.+...+++||.|+||| +|.+++.+.. +.....+.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 4567889999999999 8889988776 44444443
No 353
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.70 E-value=0.034 Score=53.70 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 004834 242 VLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l 264 (728)
.++|+||+|+|||||.+.++...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999999753
No 354
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.70 E-value=0.041 Score=53.80 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
...+.++|+|++|+|||+|+..+....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455689999999999999999998754
No 355
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.68 E-value=0.1 Score=66.24 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=28.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhC---CCeEEEecC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLG 274 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~---~~~~~i~~~ 274 (728)
.++..++|+||||+|||+||..+|..+. .+...+++.
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~E 769 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 769 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEecc
Confidence 4667899999999999999999987763 344555543
No 356
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.67 E-value=0.025 Score=59.21 Aligned_cols=32 Identities=28% Similarity=0.498 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEE
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRI 271 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i 271 (728)
.+..+.|+||||+|||||+++|+ .+......+
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i 195 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEELRTQEV 195 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhCccccc
Confidence 35688999999999999999999 654433333
No 357
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.67 E-value=0.026 Score=63.86 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHH--HHHHhC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASS--IASALG 265 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~Laka--lA~~l~ 265 (728)
.+|..++|+||||+|||||++. ++....
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 5788999999999999999999 566653
No 358
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.63 E-value=0.031 Score=53.80 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 004834 242 VLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l 264 (728)
.++|+||+|+|||||.+.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68899999999999999999765
No 359
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.62 E-value=0.04 Score=55.21 Aligned_cols=28 Identities=36% Similarity=0.508 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
.+|..+.|.||+|+||||+++.+++.+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999884
No 360
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.60 E-value=0.037 Score=58.46 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.++.+++++||+|+||||++..+|..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455689999999999999999999887
No 361
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.57 E-value=0.04 Score=61.83 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=25.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
.+.++.|.|+|||||||++++||+.|+.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999975
No 362
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.55 E-value=0.034 Score=60.59 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.++..++|+||||+|||||++.++-..
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 577899999999999999999887443
No 363
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.53 E-value=0.029 Score=63.54 Aligned_cols=36 Identities=22% Similarity=0.469 Sum_probs=30.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEec
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 273 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~ 273 (728)
.+|..+.|+||+|+|||||+++|+..+......+.+
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 327 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEITADEGSVTP 327 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEES
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 467899999999999999999999988665555544
No 364
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.48 E-value=0.047 Score=61.62 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=24.2
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKF 268 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~ 268 (728)
..++|+|+||+||||+|+.||+.++..+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 4788999999999999999999985433
No 365
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.46 E-value=0.073 Score=52.85 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKF 268 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~ 268 (728)
+|..+.|.||+|+||||+++.+++.++.+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 467899999999999999999999997643
No 366
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.45 E-value=0.097 Score=62.99 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHH
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
+..++|+||+|+||||+.+.+|..
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999643
No 367
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.43 E-value=0.037 Score=55.55 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
+..++|.|++|+||||+++.|++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34688999999999999999999984
No 368
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.42 E-value=0.029 Score=60.07 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
++..+.|+||||+|||||+++|+....
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 466899999999999999999997654
No 369
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.35 E-value=0.038 Score=52.79 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHH
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
.+..++|.||||+||||+|..+.+.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4568999999999999999999874
No 370
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.18 E-value=0.043 Score=50.38 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCChhHHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~ 263 (728)
+.++++|++|+|||+|+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999854
No 371
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.18 E-value=0.028 Score=56.11 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHH
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
.+|..+.|.||+|+||||+++.|+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45668999999999999999999986
No 372
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.16 E-value=0.078 Score=51.95 Aligned_cols=28 Identities=25% Similarity=0.359 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
..+.++|+|++|+|||||+..++..+..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 3457999999999999999999988643
No 373
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.13 E-value=0.054 Score=54.58 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=24.6
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
.++..+.|.||+|+||||+++.+++.+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999884
No 374
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.09 E-value=0.066 Score=50.11 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHH
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIAS 262 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~ 262 (728)
.+...++++|++|+|||+|...+..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999874
No 375
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.09 E-value=0.058 Score=56.73 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=24.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.+|..+++.|+||+|||+++..+|...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 677899999999999999999998665
No 376
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.02 E-value=0.05 Score=50.79 Aligned_cols=22 Identities=23% Similarity=0.600 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCChhHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIAS 262 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~ 262 (728)
..++|+|+||+|||||.+.++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3588999999999999999975
No 377
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.96 E-value=0.035 Score=61.80 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=24.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGRKF 268 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~~~ 268 (728)
+..++|+|.||+||||+++.+++.++..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 34789999999999999999999886433
No 378
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.95 E-value=0.15 Score=56.31 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=24.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.+|..+++.|+||+|||+++..+|...
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999998765
No 379
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.92 E-value=0.041 Score=52.45 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIAS 262 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~ 262 (728)
.++++|+||||||||++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999875
No 380
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.92 E-value=0.045 Score=62.08 Aligned_cols=29 Identities=34% Similarity=0.526 Sum_probs=25.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
.+|..+.|+||+|+|||||+++|+..+..
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p 73 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIP 73 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 57889999999999999999999987643
No 381
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.81 E-value=0.029 Score=54.53 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHH
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIAS 262 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~ 262 (728)
.++..++|+||||+|||||.++++.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 5566899999999999999998874
No 382
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.78 E-value=0.051 Score=59.54 Aligned_cols=26 Identities=27% Similarity=0.565 Sum_probs=22.4
Q ss_pred CCCCE--EEEEcCCCCChhHHHHHHHHH
Q 004834 238 ARGPV--LCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 238 ~~~~~--lLL~GPpGtGKT~LakalA~~ 263 (728)
.+|.. ++|+||+|+|||||.++|+..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 45666 999999999999999999865
No 383
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.75 E-value=0.024 Score=57.76 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
.++..++|.|++|+||||+++.|++.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456789999999999999999999883
No 384
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.74 E-value=0.042 Score=57.77 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
+++..++++||||+|||+++..+|...
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999999764
No 385
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.70 E-value=0.068 Score=52.94 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
+|..+.|.|++|+||||.++.+++.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999999884
No 386
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.68 E-value=0.06 Score=57.51 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
..++.+.|+||||+|||||..+++..+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999999876
No 387
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.67 E-value=0.067 Score=53.40 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
.++..+.|.|++|+||||+++.+++.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45668889999999999999999998754
No 388
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.64 E-value=0.052 Score=51.21 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHH
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
++..++|+|+||+|||||.+.++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999864
No 389
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.61 E-value=0.06 Score=51.02 Aligned_cols=22 Identities=23% Similarity=0.600 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCChhHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIAS 262 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~ 262 (728)
..++|+|++|+|||||.+.++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999985
No 390
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.61 E-value=0.071 Score=50.83 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHH
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIAS 262 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~ 262 (728)
.....++++|++|+|||||...+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4456899999999999999999874
No 391
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.60 E-value=0.066 Score=49.41 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCChhHHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~ 263 (728)
..++++|++|+|||||+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 392
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.60 E-value=0.018 Score=60.42 Aligned_cols=33 Identities=36% Similarity=0.585 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEE
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRI 271 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i 271 (728)
++..+.|+||||+|||||+++|+.........+
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I 204 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI 204 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccccccccce
Confidence 567899999999999999999987664433333
No 393
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=92.59 E-value=0.49 Score=45.53 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=15.0
Q ss_pred CEEEEEcCCCCChhHHHH
Q 004834 241 PVLCFVGPPGVGKTSLAS 258 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~Lak 258 (728)
..+++.+|+|+|||..+.
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 568999999999996544
No 394
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.50 E-value=0.069 Score=49.06 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~ 263 (728)
.++++|+||+|||+|...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999988754
No 395
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.45 E-value=0.065 Score=55.84 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
++.++.++||+|+||||++..+|..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 566888999999999999999998873
No 396
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.41 E-value=0.066 Score=60.45 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.+|..+++.||||+|||||++.++...
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 577899999999999999999999876
No 397
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.40 E-value=0.11 Score=53.55 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhccCCCCCCCEEEEEcCCCCChhHHHHHHHHH
Q 004834 222 KQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 222 k~~i~~~l~~~~~~~~~~~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
...+.+.+......+....+.++++|+||+|||||..++...
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 344444444333334456678999999999999999999743
No 398
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.39 E-value=0.068 Score=48.95 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~ 263 (728)
.++++|++|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 399
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.37 E-value=0.046 Score=61.96 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=27.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEE
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIR 270 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~ 270 (728)
.+|..+.|+||+|+|||||+++|+..+......
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~ 342 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 342 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 367899999999999999999999877544333
No 400
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.36 E-value=0.089 Score=56.68 Aligned_cols=29 Identities=41% Similarity=0.597 Sum_probs=26.0
Q ss_pred CCCCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 236 PDARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 236 ~~~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
+-.+|..++++||||||||+|++.|++.+
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 44678899999999999999999999886
No 401
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.31 E-value=0.17 Score=53.77 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=24.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.++..+.++|+||+||||++..++..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999876
No 402
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.31 E-value=0.082 Score=50.16 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHH
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
...+.++++|++|+|||+|+..+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 34458999999999999999988643
No 403
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=92.30 E-value=0.36 Score=47.22 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=17.4
Q ss_pred CEEEEEcCCCCChhHH-HHHHHHHh
Q 004834 241 PVLCFVGPPGVGKTSL-ASSIASAL 264 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~L-akalA~~l 264 (728)
..+++.+|+|+|||.. +-.+...+
T Consensus 52 ~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 4589999999999976 33334433
No 404
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.27 E-value=0.081 Score=58.58 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=24.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.+|..+++.||||+|||+++..+|..+
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 577899999999999999999998765
No 405
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.23 E-value=0.079 Score=48.71 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCChhHHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~ 263 (728)
..++++|++|+|||+|+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999998854
No 406
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.22 E-value=0.062 Score=61.73 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=26.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKF 268 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~ 268 (728)
.+|..+.|+||+|+|||||.+.|+..+....
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~ 131 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL 131 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCC
Confidence 5688999999999999999999998875443
No 407
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.22 E-value=0.055 Score=61.33 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=26.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRK 267 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~ 267 (728)
.+|.++.|+||+|+|||||.++|+..+...
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~ 52 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPN 52 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 567799999999999999999999877544
No 408
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.21 E-value=0.079 Score=48.88 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~ 263 (728)
.++++|++|+|||+|...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998754
No 409
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.20 E-value=0.074 Score=49.52 Aligned_cols=22 Identities=55% Similarity=0.739 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCChhHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIAS 262 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~ 262 (728)
..++++|+||+|||+|.+.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 3689999999999999998864
No 410
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.17 E-value=0.084 Score=49.02 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
+...+++||+|+|||++..+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999999776
No 411
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=92.11 E-value=0.13 Score=61.84 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHH
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
++..++|+||+|+||||+.+.++..
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHH
Confidence 4668999999999999999999854
No 412
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.11 E-value=0.082 Score=48.86 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 004834 242 VLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l 264 (728)
.++++|++|+|||+|.+.+...-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999997653
No 413
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=92.08 E-value=0.32 Score=47.81 Aligned_cols=19 Identities=37% Similarity=0.323 Sum_probs=15.5
Q ss_pred CCEEEEEcCCCCChhHHHH
Q 004834 240 GPVLCFVGPPGVGKTSLAS 258 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~Lak 258 (728)
+..+++.+|+|+|||..+.
T Consensus 57 ~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 3568999999999997643
No 414
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.07 E-value=0.074 Score=49.75 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHH
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
...++++|++|+|||+|...+...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999999865
No 415
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.06 E-value=0.083 Score=49.34 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCChhHHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~ 263 (728)
..++++|+||+|||+|...+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999754
No 416
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.98 E-value=0.081 Score=48.90 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~ 263 (728)
.++++|++|+|||+|...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998753
No 417
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.98 E-value=0.13 Score=54.67 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=24.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.+|..+++.|+||+|||+++..+|..+
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 567889999999999999999998775
No 418
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.97 E-value=0.086 Score=48.78 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCChhHHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~ 263 (728)
..++++|++|+|||+|...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999998854
No 419
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=91.96 E-value=0.018 Score=57.74 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=23.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCeEEEec
Q 004834 243 LCFVGPPGVGKTSLASSIASALGRKFIRISL 273 (728)
Q Consensus 243 lLL~GPpGtGKT~LakalA~~l~~~~~~i~~ 273 (728)
++++||+|+|||||.++|+..+......+.+
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~ 60 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPDLTLLHF 60 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCCTTTC--
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCCeEEE
Confidence 4588999999999999999998655433333
No 420
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.93 E-value=0.078 Score=49.11 Aligned_cols=20 Identities=40% Similarity=0.728 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIA 261 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA 261 (728)
.++++|+||+|||+|+..+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999986
No 421
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.91 E-value=0.088 Score=49.26 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHH
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
...++++|++|+|||+|+..+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 347899999999999999998764
No 422
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.90 E-value=0.089 Score=48.72 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHHH
Q 004834 240 GPVLCFVGPPGVGKTSLASSIAS 262 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~ 262 (728)
...++++|++|+|||+|...+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999965
No 423
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.89 E-value=0.054 Score=62.24 Aligned_cols=31 Identities=32% Similarity=0.558 Sum_probs=26.5
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKF 268 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~ 268 (728)
.+|..+.|+||+|+|||||+++|+..+....
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~ 410 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE 410 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSB
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 3678999999999999999999998775443
No 424
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.83 E-value=0.093 Score=48.30 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~ 263 (728)
.++++|++|+|||+|.+.+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 425
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.82 E-value=0.094 Score=48.28 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 004834 242 VLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l 264 (728)
.++++|++|+|||+|...+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999997643
No 426
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.77 E-value=0.095 Score=48.32 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~ 263 (728)
.++++|++|+|||+|...+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
No 427
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.70 E-value=0.092 Score=48.54 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIAS 262 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~ 262 (728)
.++++|++|+|||+|...+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999875
No 428
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.69 E-value=0.075 Score=49.05 Aligned_cols=20 Identities=40% Similarity=0.753 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIA 261 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA 261 (728)
.++++|+||+|||+|.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58999999999999999885
No 429
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.67 E-value=0.097 Score=49.50 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCChhHHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~ 263 (728)
..++++|++|+|||+|+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999863
No 430
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.67 E-value=0.095 Score=51.51 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
+.+.++++|++|+|||||+..++..+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 3467899999999999999999987643
No 431
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=91.59 E-value=0.095 Score=60.50 Aligned_cols=24 Identities=42% Similarity=0.733 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHh
Q 004834 241 PVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l 264 (728)
+.+++.||||||||+++..+...+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999888777665
No 432
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.53 E-value=0.099 Score=50.07 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHH
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIAS 262 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~ 262 (728)
+...++++|+||+|||+|.+.+..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999999986
No 433
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.46 E-value=0.082 Score=57.95 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
++.+++++||+|+||||++..+|..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5568899999999999999999998843
No 434
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.44 E-value=0.11 Score=50.12 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=25.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCeEEEecC
Q 004834 243 LCFVGPPGVGKTSLASSIASALGRKFIRISLG 274 (728)
Q Consensus 243 lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~ 274 (728)
++++|++|+|||++|..++.. +.+.+.+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 689999999999999999976 6665555543
No 435
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=91.41 E-value=0.67 Score=51.01 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=25.6
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
..+++++|+|+|||..+-.++..++.+.+.+.
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~ 140 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEE
Confidence 35899999999999999888877766655444
No 436
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.40 E-value=0.2 Score=50.38 Aligned_cols=35 Identities=31% Similarity=0.522 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHh--CCCeEEEec
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASAL--GRKFIRISL 273 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l--~~~~~~i~~ 273 (728)
+...+++.|.+|+||||++..+|..+ +.....++.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 34578899999999999999999887 444444543
No 437
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.37 E-value=0.095 Score=48.97 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCChhHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIAS 262 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~ 262 (728)
..++++|+||+|||+|+..+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999999874
No 438
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.37 E-value=0.11 Score=49.36 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~ 263 (728)
.++++|++|+|||||+..++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 439
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.33 E-value=0.1 Score=48.59 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCChhHHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~ 263 (728)
..++++|++|+|||+|+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999998753
No 440
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.31 E-value=0.11 Score=49.50 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~ 263 (728)
.++++|++|+|||+|+..+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
No 441
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.30 E-value=0.096 Score=49.65 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCChhHHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~ 263 (728)
..++++|+||+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 442
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.28 E-value=0.078 Score=60.92 Aligned_cols=29 Identities=38% Similarity=0.529 Sum_probs=25.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
.+|..+.|+||+|+|||||++.|+..+..
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p 143 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIP 143 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCCC
Confidence 57789999999999999999999987743
No 443
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=91.26 E-value=0.22 Score=54.83 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHH
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
...++|+|+||+|||||.+++...
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CceEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999864
No 444
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.26 E-value=0.11 Score=48.29 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHh
Q 004834 241 PVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l 264 (728)
..++++|++|+|||+|+..+...-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 379999999999999999998643
No 445
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.25 E-value=0.11 Score=48.90 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~ 263 (728)
.++++|++|+|||+|+..+...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999854
No 446
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.12 E-value=0.11 Score=48.63 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCChhHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIAS 262 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~ 262 (728)
..++++|+||+|||+|+..+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999998863
No 447
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.11 E-value=0.38 Score=46.26 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=44.0
Q ss_pred EEEEE-cCCCCChhHHHHHHHHHh---CCCeEEEecCCccchhhhccCccc---cccCCcchHHHHHhhcCCCCcEEEEe
Q 004834 242 VLCFV-GPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRT---YIGSMPGRLIDGLKRVGVCNPVMLLD 314 (728)
Q Consensus 242 ~lLL~-GPpGtGKT~LakalA~~l---~~~~~~i~~~~~~~~s~l~g~~~~---yvG~~~g~l~~~~~~a~~~~~VlllD 314 (728)
++.++ +-.|+||||++..+|..+ |.+..-+++....+.....+.... .+......+.+.+........++++|
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD 82 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVD 82 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEEE
Confidence 45565 568899999999999887 567777777654444443332211 11112234555555544445688888
Q ss_pred c
Q 004834 315 E 315 (728)
Q Consensus 315 E 315 (728)
=
T Consensus 83 ~ 83 (206)
T 4dzz_A 83 G 83 (206)
T ss_dssp C
T ss_pred C
Confidence 3
No 448
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.11 E-value=0.095 Score=65.58 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.++||+|+|||||++.|++.....-+.+.+.|
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g 451 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDG 451 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 35678999999999999999999999887777777665
No 449
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.10 E-value=0.12 Score=48.53 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCChhHHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~ 263 (728)
..++++|++|+|||+|+..+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46999999999999999999853
No 450
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.10 E-value=0.19 Score=54.27 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHh---CCCeEEEec
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISL 273 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l---~~~~~~i~~ 273 (728)
..++++++||||+|||++++.++..+ +...+.++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 56789999999999999999998765 334444443
No 451
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=91.09 E-value=0.29 Score=48.43 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCChhH-HHHHHHHHh--CCCeEEEe
Q 004834 238 ARGPVLCFVGPPGVGKTS-LASSIASAL--GRKFIRIS 272 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~-LakalA~~l--~~~~~~i~ 272 (728)
..|...+++||-|+|||| |.+.+-+.. +.....+.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 456788899999999999 555554444 44444443
No 452
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.08 E-value=0.11 Score=48.92 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCChhHHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~ 263 (728)
..++++|++|+|||+|++.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998754
No 453
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.07 E-value=0.13 Score=48.88 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHH
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
...++++|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999864
No 454
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.05 E-value=0.12 Score=48.27 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCChhHHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~ 263 (728)
..++++|++|+|||+|...+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999998754
No 455
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.05 E-value=0.12 Score=48.37 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCChhHHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~ 263 (728)
..++++|++|+|||+|+..+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999998754
No 456
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.03 E-value=0.12 Score=48.98 Aligned_cols=23 Identities=30% Similarity=0.350 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 004834 242 VLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l 264 (728)
.++++|+||+|||+|++.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999998887654
No 457
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.00 E-value=0.14 Score=47.87 Aligned_cols=24 Identities=42% Similarity=0.290 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHH
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIAS 262 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~ 262 (728)
+...++++|++|+|||+|...+..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999998875
No 458
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.95 E-value=0.13 Score=48.47 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCChhHHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~ 263 (728)
..++++|++|+|||+|+..+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999998854
No 459
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.95 E-value=0.13 Score=49.98 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHH
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
+...++++|++|+|||+|...+...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457999999999999999998864
No 460
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.89 E-value=0.13 Score=48.33 Aligned_cols=22 Identities=36% Similarity=0.383 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~ 263 (728)
.++++|++|+|||+|...+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998753
No 461
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.88 E-value=0.12 Score=48.94 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIAS 262 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~ 262 (728)
.++++|++|+|||+|...+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999999874
No 462
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.86 E-value=0.11 Score=49.17 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHH
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIAS 262 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~ 262 (728)
....++++|+||+|||+|.+.+..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999998874
No 463
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.86 E-value=0.12 Score=49.68 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHH
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
...++++|++|+|||+|+..+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999998754
No 464
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.81 E-value=0.11 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCChhHHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~ 263 (728)
..++|+|+||+|||||..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999754
No 465
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.81 E-value=0.079 Score=63.81 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCC
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 275 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~ 275 (728)
.+|..+.++||+|+|||||++.|+..+....+.+.+.+
T Consensus 697 ~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 697 SLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp ETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence 35678999999999999999999998877777776653
No 466
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.81 E-value=0.12 Score=49.21 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~ 263 (728)
.++|+|++|+|||+|+..+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999887754
No 467
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.77 E-value=0.11 Score=59.63 Aligned_cols=27 Identities=37% Similarity=0.581 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
|..+.|+||+|+|||||+++|+..+..
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 467999999999999999999988744
No 468
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.75 E-value=0.057 Score=56.88 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
-+.++++||+|+||||+.+.+....
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4578999999999999999999865
No 469
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.74 E-value=0.087 Score=49.53 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCChhHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIAS 262 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~ 262 (728)
..++|+|++|+|||+|+..+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4689999999999999999874
No 470
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.74 E-value=0.14 Score=48.75 Aligned_cols=22 Identities=36% Similarity=0.455 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~ 263 (728)
.++++|++|+|||+|...+...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998754
No 471
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.70 E-value=0.18 Score=55.71 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=24.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHh
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l 264 (728)
.+|..+++.|+||+|||+++..+|...
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 577889999999999999999998765
No 472
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.68 E-value=0.095 Score=49.12 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCChhHHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~ 263 (728)
-.++++|+||+|||+|+..+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999998864
No 473
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=90.68 E-value=0.13 Score=64.40 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=34.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHHHHhCCCeEEEecCCc
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 276 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA~~l~~~~~~i~~~~~ 276 (728)
.+|..+.++||+|+|||||++.|++.....-+.+.+.|.
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~ 1095 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGK 1095 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE
Confidence 467789999999999999999999998888888888773
No 474
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=90.66 E-value=0.16 Score=55.62 Aligned_cols=29 Identities=28% Similarity=0.591 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHhCCC
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASALGRK 267 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~l~~~ 267 (728)
++...+|+||+|+|||++..+|+..++..
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 35689999999999999999999988653
No 475
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=90.64 E-value=0.16 Score=50.17 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=25.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeEEEe
Q 004834 242 VLCFVGPPGVGKTSLASSIASALGRKFIRIS 272 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l~~~~~~i~ 272 (728)
.+.|+|..||||||+++.+++ +|.+++..+
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 588999999999999999998 777766443
No 476
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.64 E-value=0.13 Score=49.05 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~ 263 (728)
.++++|++|+|||+|+..+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6899999999999999888754
No 477
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.56 E-value=0.11 Score=51.90 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHH
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
....++|+|+||+|||||+.++...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 3457999999999999999998854
No 478
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.53 E-value=0.14 Score=48.60 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCChhHHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~ 263 (728)
..++++|++|+|||+|+..+...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 479
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=90.47 E-value=0.38 Score=47.77 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=14.6
Q ss_pred CEEEEEcCCCCChhHHH
Q 004834 241 PVLCFVGPPGVGKTSLA 257 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~La 257 (728)
..+++.+|+|+|||..+
T Consensus 68 ~~~li~apTGsGKT~~~ 84 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATF 84 (237)
T ss_dssp CCEEECCCSSHHHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 45899999999999764
No 480
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.46 E-value=0.11 Score=49.64 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHHH
Q 004834 240 GPVLCFVGPPGVGKTSLASSIAS 262 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~ 262 (728)
.+.++++|++|+|||+|...+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999988763
No 481
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.44 E-value=0.093 Score=49.38 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=20.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHH
Q 004834 238 ARGPVLCFVGPPGVGKTSLASSIA 261 (728)
Q Consensus 238 ~~~~~lLL~GPpGtGKT~LakalA 261 (728)
.+...++++|++|+|||+|...+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 345579999999999999998775
No 482
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.42 E-value=0.15 Score=48.86 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHH
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
...++++|++|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999998864
No 483
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.38 E-value=0.15 Score=48.60 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHH
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
....++++|++|+|||+|...+...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3447999999999999999999763
No 484
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.38 E-value=0.15 Score=48.32 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCChhHHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~ 263 (728)
..++++|++|+|||+|+..+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999764
No 485
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.34 E-value=0.11 Score=54.13 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~ 263 (728)
.++++||+|+|||||.+.|+..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999998754
No 486
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.33 E-value=0.16 Score=49.74 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.9
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHhCC
Q 004834 241 PVLCFVGPPGVGKTSLASSIASALGR 266 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l~~ 266 (728)
...+++||+|+|||++..+|.-.++.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 47889999999999999999987753
No 487
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.33 E-value=0.14 Score=48.87 Aligned_cols=23 Identities=30% Similarity=0.673 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCChhHHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~ 263 (728)
..++++|++|+|||+|...+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36999999999999999999754
No 488
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.32 E-value=0.14 Score=49.12 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~ 263 (728)
.++++|+||+|||+|...+...
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998853
No 489
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.30 E-value=0.16 Score=48.40 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~ 263 (728)
.++++|++|+|||+|...+...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999753
No 490
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.30 E-value=0.12 Score=49.81 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHH
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
...++|+|++|+|||+|+..+...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 346999999999999999999864
No 491
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.30 E-value=0.13 Score=49.55 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHHH
Q 004834 240 GPVLCFVGPPGVGKTSLASSIAS 262 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~ 262 (728)
...++++|+||+|||+|.+.+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999998863
No 492
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.28 E-value=0.14 Score=48.92 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 004834 242 VLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~l 264 (728)
.++|+|++|+|||+|+..+...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 69999999999999999998765
No 493
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.27 E-value=0.16 Score=48.53 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCChhHHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~ 263 (728)
-.++++|++|+|||+|...+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36999999999999999998864
No 494
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.27 E-value=0.14 Score=48.41 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHH
Q 004834 239 RGPVLCFVGPPGVGKTSLASSIAS 262 (728)
Q Consensus 239 ~~~~lLL~GPpGtGKT~LakalA~ 262 (728)
+...++++|+||+|||+|...+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 445799999999999999998874
No 495
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.24 E-value=0.16 Score=48.41 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 004834 242 VLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 242 ~lLL~GPpGtGKT~LakalA~~ 263 (728)
.++++|++|+|||+|...+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999998753
No 496
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.23 E-value=0.16 Score=48.90 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHh
Q 004834 241 PVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l 264 (728)
..++++|++|+|||+|+..+...-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999997643
No 497
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.21 E-value=0.16 Score=48.25 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCChhHHHHHHHHH
Q 004834 241 PVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~ 263 (728)
..++++|++|+|||+|...+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999998753
No 498
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.17 E-value=0.16 Score=48.78 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHH
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASA 263 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~ 263 (728)
...++++|++|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 347999999999999999998753
No 499
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=90.14 E-value=0.19 Score=56.90 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHhC
Q 004834 240 GPVLCFVGPPGVGKTSLASSIASALG 265 (728)
Q Consensus 240 ~~~lLL~GPpGtGKT~LakalA~~l~ 265 (728)
+..++|.|+||+||||+++.+++.++
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 45788999999999999999999874
No 500
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=90.13 E-value=0.15 Score=60.46 Aligned_cols=24 Identities=42% Similarity=0.733 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHh
Q 004834 241 PVLCFVGPPGVGKTSLASSIASAL 264 (728)
Q Consensus 241 ~~lLL~GPpGtGKT~LakalA~~l 264 (728)
+.+++.||||||||+++..+...+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 578899999999999888777665
Done!