Query 004836
Match_columns 728
No_of_seqs 304 out of 1792
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 13:44:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.4 1.3E-13 2.8E-18 148.5 4.5 49 679-727 230-279 (348)
2 PF13639 zf-RING_2: Ring finge 99.4 2.2E-13 4.7E-18 105.6 2.1 44 679-722 1-44 (44)
3 COG5540 RING-finger-containing 99.1 4.2E-11 9E-16 125.9 3.8 51 677-727 322-373 (374)
4 PF12678 zf-rbx1: RING-H2 zinc 99.1 1E-10 2.2E-15 100.7 4.4 48 675-722 16-73 (73)
5 PHA02929 N1R/p28-like protein; 99.1 1.4E-10 2.9E-15 120.3 5.3 51 676-726 172-227 (238)
6 COG5243 HRD1 HRD ubiquitin lig 99.0 1.9E-10 4.1E-15 123.6 4.0 51 675-725 284-344 (491)
7 PLN03208 E3 ubiquitin-protein 99.0 5.3E-10 1.2E-14 112.3 5.1 48 676-726 16-79 (193)
8 KOG0317 Predicted E3 ubiquitin 98.9 4.4E-10 9.5E-15 117.9 3.9 51 674-727 235-285 (293)
9 KOG0823 Predicted E3 ubiquitin 98.9 5.4E-10 1.2E-14 114.3 3.3 49 675-726 44-95 (230)
10 KOG0320 Predicted E3 ubiquitin 98.9 1.4E-09 3E-14 107.6 3.8 55 671-726 124-178 (187)
11 PF13920 zf-C3HC4_3: Zinc fing 98.8 2.5E-09 5.5E-14 85.1 3.0 46 678-726 2-48 (50)
12 PF13923 zf-C3HC4_2: Zinc fing 98.8 3.9E-09 8.5E-14 80.0 3.1 39 681-721 1-39 (39)
13 cd00162 RING RING-finger (Real 98.8 5.6E-09 1.2E-13 78.3 3.9 44 680-725 1-45 (45)
14 PF15227 zf-C3HC4_4: zinc fing 98.7 8.4E-09 1.8E-13 80.1 3.0 38 681-721 1-42 (42)
15 smart00504 Ubox Modified RING 98.7 1.4E-08 3.1E-13 83.2 4.6 45 679-726 2-46 (63)
16 KOG0802 E3 ubiquitin ligase [P 98.6 9.1E-09 2E-13 118.0 1.8 51 676-726 289-341 (543)
17 PHA02926 zinc finger-like prot 98.6 2.6E-08 5.6E-13 101.8 3.6 51 675-725 167-229 (242)
18 PF12861 zf-Apc11: Anaphase-pr 98.6 3.5E-08 7.6E-13 87.6 3.8 49 677-725 20-81 (85)
19 PF14634 zf-RING_5: zinc-RING 98.6 4E-08 8.6E-13 76.6 3.7 44 680-723 1-44 (44)
20 TIGR00599 rad18 DNA repair pro 98.6 3.4E-08 7.3E-13 109.2 3.9 49 675-726 23-71 (397)
21 PF00097 zf-C3HC4: Zinc finger 98.6 4E-08 8.6E-13 74.7 3.1 39 681-721 1-41 (41)
22 smart00184 RING Ring finger. E 98.5 9.6E-08 2.1E-12 69.1 3.5 38 681-721 1-39 (39)
23 COG5574 PEX10 RING-finger-cont 98.4 1.2E-07 2.6E-12 98.9 2.7 49 676-727 213-263 (271)
24 KOG0287 Postreplication repair 98.3 2.7E-07 5.9E-12 98.8 1.6 48 676-726 21-68 (442)
25 KOG2164 Predicted E3 ubiquitin 98.3 3.7E-07 8.1E-12 102.3 2.7 47 678-727 186-237 (513)
26 PF04564 U-box: U-box domain; 98.2 5.6E-07 1.2E-11 77.4 2.6 47 677-726 3-50 (73)
27 COG5194 APC11 Component of SCF 98.2 8.9E-07 1.9E-11 77.5 3.4 48 678-725 20-80 (88)
28 COG5432 RAD18 RING-finger-cont 98.2 7.3E-07 1.6E-11 94.0 2.6 46 676-724 23-68 (391)
29 KOG0828 Predicted E3 ubiquitin 98.2 7.4E-07 1.6E-11 99.2 2.4 53 675-727 568-635 (636)
30 KOG2177 Predicted E3 ubiquitin 98.2 6.8E-07 1.5E-11 89.3 1.9 45 675-722 10-54 (386)
31 PF13445 zf-RING_UBOX: RING-ty 98.0 4E-06 8.6E-11 65.8 3.0 38 681-719 1-43 (43)
32 KOG1734 Predicted RING-contain 98.0 1.4E-06 2.9E-11 91.3 0.4 52 674-725 220-280 (328)
33 KOG0978 E3 ubiquitin ligase in 97.9 7E-06 1.5E-10 95.9 4.1 47 677-726 642-689 (698)
34 KOG1493 Anaphase-promoting com 97.9 2.3E-06 5E-11 74.4 -0.2 52 674-725 16-80 (84)
35 smart00744 RINGv The RING-vari 97.9 1.1E-05 2.3E-10 64.9 3.4 42 680-722 1-49 (49)
36 KOG2930 SCF ubiquitin ligase, 97.8 6.1E-06 1.3E-10 75.6 1.4 52 673-724 41-106 (114)
37 PF11793 FANCL_C: FANCL C-term 97.8 4.2E-06 9.2E-11 71.8 0.2 49 678-726 2-66 (70)
38 COG5219 Uncharacterized conser 97.8 8.7E-06 1.9E-10 96.0 2.3 53 674-726 1465-1523(1525)
39 KOG0311 Predicted E3 ubiquitin 97.8 3.6E-06 7.8E-11 91.0 -1.2 48 676-726 41-90 (381)
40 KOG4265 Predicted E3 ubiquitin 97.7 2E-05 4.2E-10 85.6 2.6 49 676-727 288-337 (349)
41 KOG1039 Predicted E3 ubiquitin 97.5 4.5E-05 9.8E-10 83.4 2.6 50 676-725 159-220 (344)
42 KOG0825 PHD Zn-finger protein 97.5 2.1E-05 4.5E-10 91.6 -0.7 51 676-726 121-171 (1134)
43 KOG4172 Predicted E3 ubiquitin 97.5 2.9E-05 6.4E-10 63.8 0.2 46 678-726 7-54 (62)
44 PF14835 zf-RING_6: zf-RING of 97.4 3.7E-05 8E-10 65.2 0.3 42 679-725 8-50 (65)
45 KOG4159 Predicted E3 ubiquitin 97.4 0.0001 2.2E-09 82.1 3.5 49 675-726 81-129 (398)
46 KOG0804 Cytoplasmic Zn-finger 97.4 8E-05 1.7E-09 82.8 2.1 52 674-727 171-223 (493)
47 KOG4445 Uncharacterized conser 97.2 0.00015 3.2E-09 77.4 1.9 53 674-726 111-186 (368)
48 KOG1785 Tyrosine kinase negati 97.2 0.00014 3.1E-09 79.8 1.3 46 679-727 370-417 (563)
49 KOG2879 Predicted E3 ubiquitin 97.1 0.0014 3.1E-08 69.4 8.4 53 673-727 234-288 (298)
50 PF11789 zf-Nse: Zinc-finger o 97.1 0.00033 7.2E-09 58.1 2.4 43 676-720 9-53 (57)
51 KOG4692 Predicted E3 ubiquitin 97.1 0.00036 7.8E-09 75.8 3.1 50 674-726 418-467 (489)
52 KOG1428 Inhibitor of type V ad 96.8 0.00072 1.6E-08 82.7 3.0 53 674-726 3482-3544(3738)
53 KOG0297 TNF receptor-associate 96.8 0.00062 1.3E-08 75.9 2.3 49 675-726 18-67 (391)
54 KOG2660 Locus-specific chromos 96.7 0.00035 7.5E-09 75.5 -0.1 50 675-726 12-61 (331)
55 KOG1814 Predicted E3 ubiquitin 96.7 0.00069 1.5E-08 75.0 2.1 48 677-724 183-238 (445)
56 COG5152 Uncharacterized conser 96.6 0.00099 2.1E-08 67.7 2.0 46 677-725 195-240 (259)
57 KOG1002 Nucleotide excision re 96.4 0.0013 2.7E-08 74.6 1.6 49 674-725 532-585 (791)
58 KOG4275 Predicted E3 ubiquitin 96.4 0.001 2.2E-08 70.9 0.8 88 630-725 248-341 (350)
59 KOG1813 Predicted E3 ubiquitin 96.2 0.0017 3.7E-08 69.4 1.0 45 678-725 241-285 (313)
60 KOG3039 Uncharacterized conser 95.8 0.0065 1.4E-07 63.7 3.3 50 677-726 220-270 (303)
61 COG5222 Uncharacterized conser 95.8 0.0046 9.9E-08 66.2 2.2 43 678-723 274-318 (427)
62 KOG1941 Acetylcholine receptor 95.8 0.003 6.4E-08 69.7 0.7 46 678-723 365-413 (518)
63 KOG1571 Predicted E3 ubiquitin 95.7 0.0031 6.8E-08 69.0 0.3 43 677-725 304-346 (355)
64 KOG2114 Vacuolar assembly/sort 95.5 0.011 2.4E-07 70.4 3.9 45 676-725 838-882 (933)
65 COG5236 Uncharacterized conser 95.4 0.011 2.4E-07 64.5 3.3 53 670-725 53-107 (493)
66 PF05883 Baculo_RING: Baculovi 95.3 0.0066 1.4E-07 58.6 1.1 36 678-713 26-67 (134)
67 PF10367 Vps39_2: Vacuolar sor 95.3 0.006 1.3E-07 54.7 0.6 34 675-709 75-108 (109)
68 KOG3970 Predicted E3 ubiquitin 95.2 0.013 2.8E-07 60.8 3.0 49 678-727 50-106 (299)
69 PHA03096 p28-like protein; Pro 94.8 0.015 3.2E-07 62.7 1.9 45 679-723 179-231 (284)
70 PF04641 Rtf2: Rtf2 RING-finge 94.7 0.031 6.7E-07 59.2 4.2 51 675-726 110-161 (260)
71 KOG2034 Vacuolar sorting prote 94.7 0.017 3.7E-07 69.4 2.4 37 675-712 814-850 (911)
72 PF14570 zf-RING_4: RING/Ubox 94.7 0.028 6E-07 45.5 2.9 44 681-724 1-46 (48)
73 KOG0801 Predicted E3 ubiquitin 94.5 0.012 2.6E-07 58.4 0.4 32 674-705 173-204 (205)
74 PF12906 RINGv: RING-variant d 94.4 0.03 6.6E-07 44.7 2.6 40 681-721 1-47 (47)
75 KOG3268 Predicted E3 ubiquitin 94.4 0.024 5.2E-07 57.1 2.3 49 677-725 164-227 (234)
76 PHA02825 LAP/PHD finger-like p 94.4 0.044 9.5E-07 54.4 4.1 47 675-725 5-58 (162)
77 KOG1001 Helicase-like transcri 94.2 0.075 1.6E-06 63.4 6.2 43 679-725 455-499 (674)
78 KOG0827 Predicted E3 ubiquitin 94.0 0.0035 7.5E-08 69.1 -4.8 50 677-726 195-245 (465)
79 PHA02862 5L protein; Provision 94.0 0.041 8.9E-07 53.8 3.0 48 678-725 2-52 (156)
80 PF14447 Prok-RING_4: Prokaryo 93.7 0.033 7.2E-07 46.2 1.5 47 676-727 5-51 (55)
81 KOG1952 Transcription factor N 93.6 0.046 9.9E-07 65.5 3.0 47 677-723 190-244 (950)
82 KOG0826 Predicted E3 ubiquitin 93.3 0.068 1.5E-06 58.3 3.5 49 675-725 297-345 (357)
83 KOG3002 Zn finger protein [Gen 92.4 0.074 1.6E-06 57.8 2.1 45 675-726 45-91 (299)
84 KOG0298 DEAD box-containing he 91.9 0.043 9.3E-07 68.2 -0.4 45 676-723 1151-1196(1394)
85 KOG1829 Uncharacterized conser 91.6 0.2 4.4E-06 58.7 4.7 44 676-722 509-557 (580)
86 KOG2932 E3 ubiquitin ligase in 91.5 0.075 1.6E-06 57.5 1.1 42 680-725 92-133 (389)
87 COG5175 MOT2 Transcriptional r 91.3 0.13 2.7E-06 56.4 2.4 50 676-725 12-63 (480)
88 PF10272 Tmpp129: Putative tra 90.5 0.55 1.2E-05 52.3 6.5 26 699-724 311-349 (358)
89 KOG1940 Zn-finger protein [Gen 90.4 0.14 3.1E-06 55.0 1.8 45 679-723 159-204 (276)
90 PF08746 zf-RING-like: RING-li 90.3 0.17 3.6E-06 39.9 1.7 41 681-721 1-43 (43)
91 KOG4362 Transcriptional regula 88.6 0.12 2.5E-06 61.4 -0.4 45 678-725 21-68 (684)
92 COG5183 SSM4 Protein involved 87.7 0.47 1E-05 57.0 3.6 49 676-725 10-65 (1175)
93 PF13901 DUF4206: Domain of un 87.2 0.88 1.9E-05 46.7 5.0 42 677-723 151-197 (202)
94 KOG1609 Protein involved in mR 87.2 0.37 8E-06 51.1 2.3 49 677-725 77-133 (323)
95 KOG3053 Uncharacterized conser 87.2 0.25 5.5E-06 52.5 1.0 52 674-725 16-81 (293)
96 COG5220 TFB3 Cdk activating ki 87.1 0.29 6.2E-06 51.6 1.4 46 677-723 9-61 (314)
97 KOG0825 PHD Zn-finger protein 86.9 0.34 7.4E-06 57.9 2.0 50 676-725 94-153 (1134)
98 KOG1100 Predicted E3 ubiquitin 86.4 0.34 7.3E-06 50.2 1.4 39 681-726 161-200 (207)
99 PF05290 Baculo_IE-1: Baculovi 86.4 0.83 1.8E-05 44.4 3.9 47 677-726 79-132 (140)
100 KOG1812 Predicted E3 ubiquitin 85.2 0.35 7.5E-06 54.3 0.9 39 677-715 145-184 (384)
101 PF03854 zf-P11: P-11 zinc fin 85.1 0.32 7E-06 39.5 0.4 31 696-726 15-46 (50)
102 KOG0309 Conserved WD40 repeat- 83.6 0.59 1.3E-05 55.9 1.9 27 694-720 1043-1069(1081)
103 KOG2817 Predicted E3 ubiquitin 82.6 0.95 2.1E-05 50.8 2.9 47 679-725 335-384 (394)
104 KOG3899 Uncharacterized conser 82.4 2.3 5E-05 46.2 5.5 27 699-725 325-364 (381)
105 PF14446 Prok-RING_1: Prokaryo 81.3 1.7 3.8E-05 36.2 3.3 34 677-710 4-38 (54)
106 KOG0269 WD40 repeat-containing 80.2 3.7 7.9E-05 49.5 6.6 41 679-720 780-820 (839)
107 KOG3161 Predicted E3 ubiquitin 78.4 0.69 1.5E-05 54.4 0.1 40 678-719 11-51 (861)
108 KOG1815 Predicted E3 ubiquitin 76.0 1.6 3.5E-05 49.7 2.2 39 675-715 67-105 (444)
109 KOG3039 Uncharacterized conser 73.8 2.2 4.7E-05 45.4 2.3 36 675-713 40-75 (303)
110 KOG2066 Vacuolar assembly/sort 72.0 1.4 3E-05 53.1 0.4 45 676-721 782-830 (846)
111 PF02891 zf-MIZ: MIZ/SP-RING z 71.1 4.3 9.4E-05 32.9 3.0 43 679-724 3-50 (50)
112 KOG2807 RNA polymerase II tran 69.0 4.6 9.9E-05 44.6 3.5 51 674-724 326-376 (378)
113 KOG3579 Predicted E3 ubiquitin 68.6 2.5 5.4E-05 45.8 1.4 40 677-716 267-307 (352)
114 KOG1812 Predicted E3 ubiquitin 67.5 7 0.00015 44.1 4.7 42 679-721 307-351 (384)
115 KOG4718 Non-SMC (structural ma 67.5 2.7 5.7E-05 43.9 1.3 45 676-722 179-223 (235)
116 KOG0802 E3 ubiquitin ligase [P 65.1 2.7 5.8E-05 49.2 0.8 44 675-725 476-519 (543)
117 KOG2169 Zn-finger transcriptio 63.7 8.5 0.00018 46.2 4.7 44 678-725 306-355 (636)
118 KOG2068 MOT2 transcription fac 59.9 6.5 0.00014 43.5 2.6 48 679-726 250-298 (327)
119 KOG0824 Predicted E3 ubiquitin 59.0 3.4 7.5E-05 45.1 0.3 53 673-727 100-152 (324)
120 PF10235 Cript: Microtubule-as 56.6 6.3 0.00014 36.1 1.5 39 678-728 44-82 (90)
121 KOG3005 GIY-YIG type nuclease 55.8 5.9 0.00013 42.7 1.4 47 679-725 183-242 (276)
122 COG5109 Uncharacterized conser 54.7 8.4 0.00018 42.5 2.3 45 678-722 336-383 (396)
123 smart00249 PHD PHD zinc finger 53.8 8.9 0.00019 28.6 1.8 32 680-711 1-32 (47)
124 TIGR00622 ssl1 transcription f 51.0 18 0.0004 34.4 3.7 46 678-723 55-111 (112)
125 PLN02189 cellulose synthase 45.8 18 0.00039 45.6 3.5 49 677-725 33-86 (1040)
126 PF07191 zinc-ribbons_6: zinc- 43.2 3.1 6.7E-05 36.4 -2.5 39 679-725 2-40 (70)
127 KOG3113 Uncharacterized conser 42.7 22 0.00048 38.3 3.1 48 677-726 110-158 (293)
128 COG4647 AcxC Acetone carboxyla 42.5 12 0.00027 36.4 1.2 22 682-706 61-82 (165)
129 PF07227 DUF1423: Protein of u 41.9 77 0.0017 36.7 7.4 32 678-710 128-163 (446)
130 PF00628 PHD: PHD-finger; Int 41.9 15 0.00032 29.0 1.3 44 680-723 1-50 (51)
131 PF04710 Pellino: Pellino; In 40.8 9.1 0.0002 43.4 0.0 28 694-724 304-337 (416)
132 KOG3842 Adaptor protein Pellin 39.0 28 0.0006 38.6 3.3 52 674-725 337-413 (429)
133 PF06906 DUF1272: Protein of u 38.2 42 0.0009 28.5 3.4 46 680-727 7-53 (57)
134 KOG3799 Rab3 effector RIM1 and 38.1 8.8 0.00019 37.7 -0.5 43 675-724 62-116 (169)
135 PLN02436 cellulose synthase A 38.0 29 0.00064 43.9 3.7 49 677-725 35-88 (1094)
136 PLN02638 cellulose synthase A 36.8 33 0.00072 43.5 3.9 48 677-724 16-68 (1079)
137 KOG1814 Predicted E3 ubiquitin 36.8 17 0.00037 41.5 1.3 37 676-712 366-405 (445)
138 KOG4185 Predicted E3 ubiquitin 36.8 7.7 0.00017 41.4 -1.3 48 677-724 206-265 (296)
139 KOG2071 mRNA cleavage and poly 36.1 21 0.00045 42.4 1.9 36 676-711 511-556 (579)
140 PF06844 DUF1244: Protein of u 36.0 20 0.00043 31.3 1.3 12 702-713 11-22 (68)
141 smart00132 LIM Zinc-binding do 35.8 34 0.00075 24.5 2.4 38 680-726 1-38 (39)
142 PF07975 C1_4: TFIIH C1-like d 35.7 26 0.00056 29.0 1.9 42 681-722 2-50 (51)
143 PF05605 zf-Di19: Drought indu 33.7 22 0.00049 28.8 1.2 37 678-724 2-40 (54)
144 PLN02400 cellulose synthase 32.9 33 0.00071 43.6 3.0 49 677-725 35-88 (1085)
145 KOG3726 Uncharacterized conser 32.1 22 0.00048 42.8 1.3 42 678-722 654-696 (717)
146 KOG2979 Protein involved in DN 31.2 26 0.00057 37.7 1.5 43 678-722 176-220 (262)
147 PF04216 FdhE: Protein involve 30.6 14 0.00031 39.7 -0.5 49 676-724 170-220 (290)
148 PF13717 zinc_ribbon_4: zinc-r 30.2 27 0.00057 26.6 1.0 25 680-704 4-36 (36)
149 PLN02915 cellulose synthase A 29.5 59 0.0013 41.3 4.3 51 675-725 12-67 (1044)
150 PF02318 FYVE_2: FYVE-type zin 27.4 40 0.00086 31.8 1.9 46 677-723 53-102 (118)
151 KOG1356 Putative transcription 26.3 22 0.00048 43.7 0.0 47 676-723 227-279 (889)
152 KOG4443 Putative transcription 26.0 36 0.00078 41.0 1.6 46 678-723 18-70 (694)
153 PF01363 FYVE: FYVE zinc finge 26.0 30 0.00066 29.0 0.8 38 676-713 7-45 (69)
154 PF14569 zf-UDP: Zinc-binding 24.8 66 0.0014 29.0 2.6 49 677-725 8-61 (80)
155 KOG3842 Adaptor protein Pellin 24.1 40 0.00087 37.4 1.4 30 692-724 315-350 (429)
156 KOG0956 PHD finger protein AF1 24.0 19 0.00041 43.4 -1.0 47 678-724 117-180 (900)
157 smart00064 FYVE Protein presen 24.0 39 0.00084 28.3 1.1 38 676-713 8-46 (68)
158 PF04710 Pellino: Pellino; In 23.6 27 0.00058 39.8 0.0 49 678-726 328-401 (416)
159 KOG1729 FYVE finger containing 23.3 15 0.00033 40.1 -1.9 38 678-715 214-251 (288)
160 COG5574 PEX10 RING-finger-cont 22.5 62 0.0013 35.2 2.4 40 674-713 91-132 (271)
161 KOG0955 PHD finger protein BR1 22.4 68 0.0015 40.9 3.1 37 673-709 214-252 (1051)
162 COG0068 HypF Hydrogenase matur 22.2 41 0.00089 40.9 1.2 48 676-723 99-181 (750)
163 COG3492 Uncharacterized protei 22.0 44 0.00095 31.0 1.0 12 703-714 43-54 (104)
164 cd00350 rubredoxin_like Rubred 21.7 55 0.0012 24.2 1.4 22 697-724 5-26 (33)
165 PF13719 zinc_ribbon_5: zinc-r 21.3 47 0.001 25.3 1.0 25 680-704 4-36 (37)
166 PF10497 zf-4CXXC_R1: Zinc-fin 21.0 1E+02 0.0022 28.8 3.3 24 700-723 37-69 (105)
167 PF10146 zf-C4H2: Zinc finger- 20.9 58 0.0013 34.6 1.8 23 702-724 195-217 (230)
168 KOG1842 FYVE finger-containing 20.9 41 0.00088 38.9 0.7 39 672-710 174-213 (505)
169 KOG2231 Predicted E3 ubiquitin 20.7 20 0.00043 43.3 -1.7 47 673-721 73-121 (669)
170 PRK04023 DNA polymerase II lar 20.0 66 0.0014 40.8 2.3 48 675-727 623-675 (1121)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.3e-13 Score=148.51 Aligned_cols=49 Identities=49% Similarity=1.151 Sum_probs=45.4
Q ss_pred CcccccccccCCCCceEecCCCCccchHHHHHHHhcCC-CCCCCCCCCCC
Q 004836 679 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTGLP 727 (728)
Q Consensus 679 ~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~-sCPlCR~~llp 727 (728)
+.|+||+|+|+++|++++|||+|.||..||++||.+.. .||+||+.+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 68999999999999999999999999999999999875 59999998753
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.36 E-value=2.2e-13 Score=105.55 Aligned_cols=44 Identities=50% Similarity=1.238 Sum_probs=40.5
Q ss_pred CcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCC
Q 004836 679 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 722 (728)
Q Consensus 679 ~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR 722 (728)
++|+||+++|..++.++.++|+|.||.+||.+|++.+..||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 46999999999999999999999999999999999999999997
No 3
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=4.2e-11 Score=125.87 Aligned_cols=51 Identities=37% Similarity=1.002 Sum_probs=47.6
Q ss_pred CCCcccccccccCCCCceEecCCCCccchHHHHHHHh-cCCCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGLP 727 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~-~k~sCPlCR~~llp 727 (728)
...+|+|||+.|.+.|+++.|||.|.||..||.+|+. .++.||+||.++.|
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 3477999999999999999999999999999999998 78899999999876
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.07 E-value=1e-10 Score=100.70 Aligned_cols=48 Identities=42% Similarity=0.935 Sum_probs=38.0
Q ss_pred CCCCCcccccccccCCC----------CceEecCCCCccchHHHHHHHhcCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDG----------DNLGILDCGHDFHTNCIKQWLMQKNLCPICK 722 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~----------d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR 722 (728)
...++.|+||++.|.+. ..+...+|||.||..||.+||+.+.+||+||
T Consensus 16 ~~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 16 DIADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SSCCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCcCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 33455699999999532 2355568999999999999999999999998
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.06 E-value=1.4e-10 Score=120.34 Aligned_cols=51 Identities=35% Similarity=0.795 Sum_probs=42.3
Q ss_pred CCCCcccccccccCCCCc-----eEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDN-----LGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~-----Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
.++..|+||++.+.+++. .+.++|+|.||..||.+|+..+.+||+||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 456789999999876531 234579999999999999999999999998764
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.9e-10 Score=123.57 Aligned_cols=51 Identities=35% Similarity=0.879 Sum_probs=43.5
Q ss_pred CCCCCcccccccccCCCC----------ceEecCCCCccchHHHHHHHhcCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGD----------NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 725 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d----------~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~l 725 (728)
..++..|.||+|++...+ ..+.|||||+||.+|++.|++++.+||+||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 556788999999944322 347899999999999999999999999999984
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.96 E-value=5.3e-10 Score=112.33 Aligned_cols=48 Identities=31% Similarity=0.721 Sum_probs=41.1
Q ss_pred CCCCcccccccccCCCCceEecCCCCccchHHHHHHHhc----------------CCCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ----------------KNLCPICKTTGL 726 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~----------------k~sCPlCR~~ll 726 (728)
.++.+|+||++.++++ ++++|||.||+.||.+|+.. +..||+||..+.
T Consensus 16 ~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 3567899999999887 78899999999999999852 246999999874
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=4.4e-10 Score=117.95 Aligned_cols=51 Identities=33% Similarity=0.826 Sum_probs=45.7
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 727 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~llp 727 (728)
......+|.||||....+ ..+||||+||+.||..|+..+..||+||....|
T Consensus 235 i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 344567899999999888 899999999999999999999999999998765
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=5.4e-10 Score=114.34 Aligned_cols=49 Identities=33% Similarity=0.639 Sum_probs=42.9
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhc---CCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ---KNLCPICKTTGL 726 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~---k~sCPlCR~~ll 726 (728)
+...++|.||||.-+++ +++.|||.||+-||.+||.. ++.||+||..+.
T Consensus 44 ~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 56678999999998888 88899999999999999984 456999998764
No 10
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.4e-09 Score=107.57 Aligned_cols=55 Identities=27% Similarity=0.522 Sum_probs=45.4
Q ss_pred ccCCCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 671 EIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 671 e~~~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
.....+....|+|||+.+.+... +.++|||+||..||+.-++....||+|++.|-
T Consensus 124 ~~~~~~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 124 DPLRKEGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred cccccccccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 33445556889999999987522 46899999999999999999999999998763
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.81 E-value=2.5e-09 Score=85.11 Aligned_cols=46 Identities=39% Similarity=0.819 Sum_probs=39.6
Q ss_pred CCcccccccccCCCCceEecCCCCc-cchHHHHHHHhcCCCCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~-FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
+..|.||++...+ ++.+||||. ||..|+.+|+..+..||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4679999999665 488899999 999999999999999999999874
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.78 E-value=3.9e-09 Score=80.02 Aligned_cols=39 Identities=38% Similarity=1.022 Sum_probs=33.9
Q ss_pred ccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCC
Q 004836 681 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPIC 721 (728)
Q Consensus 681 C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlC 721 (728)
|+||++.+.++ ++.++|||.||..||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~~--~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP--VVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE--EEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCc--CEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999998874 5688999999999999999998899998
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.78 E-value=5.6e-09 Score=78.33 Aligned_cols=44 Identities=45% Similarity=1.077 Sum_probs=36.7
Q ss_pred cccccccccCCCCceEecCCCCccchHHHHHHHhc-CCCCCCCCCCC
Q 004836 680 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTG 725 (728)
Q Consensus 680 ~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~-k~sCPlCR~~l 725 (728)
+|+||++.+.+ .+..++|||.||..|++.|+.. ...||+||..+
T Consensus 1 ~C~iC~~~~~~--~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE--PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC--ceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 59999999833 3455569999999999999997 67899999864
No 14
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.71 E-value=8.4e-09 Score=80.11 Aligned_cols=38 Identities=34% Similarity=0.857 Sum_probs=30.9
Q ss_pred ccccccccCCCCceEecCCCCccchHHHHHHHhcC----CCCCCC
Q 004836 681 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPIC 721 (728)
Q Consensus 681 C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k----~sCPlC 721 (728)
|+||++.|+++ +.|+|||.||..||.+|++.. ..||+|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999 999999999999999999854 369998
No 15
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.71 E-value=1.4e-08 Score=83.23 Aligned_cols=45 Identities=24% Similarity=0.411 Sum_probs=41.4
Q ss_pred CcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 679 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 679 ~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
..|+||++.++++ +.++|||+||+.||.+|+..+..||+|+..+.
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 5699999999998 78899999999999999999889999998763
No 16
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=9.1e-09 Score=118.00 Aligned_cols=51 Identities=39% Similarity=0.922 Sum_probs=44.8
Q ss_pred CCCCcccccccccCCCCc--eEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDN--LGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~--Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
..+..|+||+|++..++. ...|+|+|+||..|++.|++++.+||+||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 347889999999998654 578899999999999999999999999998543
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.60 E-value=2.6e-08 Score=101.81 Aligned_cols=51 Identities=37% Similarity=0.796 Sum_probs=38.7
Q ss_pred CCCCCcccccccccCCC-----CceEec-CCCCccchHHHHHHHhcC------CCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDG-----DNLGIL-DCGHDFHTNCIKQWLMQK------NLCPICKTTG 725 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~-----d~Vv~L-pCGH~FH~~CI~~WL~~k------~sCPlCR~~l 725 (728)
..++.+|+||+|...+. .....| +|+|.||..||.+|...+ ..||+||...
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 34568899999986432 123445 799999999999999853 3599999865
No 18
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.59 E-value=3.5e-08 Score=87.59 Aligned_cols=49 Identities=33% Similarity=0.852 Sum_probs=39.4
Q ss_pred CCCcccccccccCC----------CCceEecCCCCccchHHHHHHHhc---CCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTD----------GDNLGILDCGHDFHTNCIKQWLMQ---KNLCPICKTTG 725 (728)
Q Consensus 677 ee~~C~ICLEefee----------~d~Vv~LpCGH~FH~~CI~~WL~~---k~sCPlCR~~l 725 (728)
+++.|.||...|+. +-.++.-.|+|.||..||.+||.. +..||+||++.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 47889999999982 113455579999999999999995 46799999864
No 19
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.59 E-value=4e-08 Score=76.58 Aligned_cols=44 Identities=34% Similarity=0.835 Sum_probs=38.7
Q ss_pred cccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCC
Q 004836 680 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 723 (728)
Q Consensus 680 ~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~ 723 (728)
.|.||++.|.+.....++.|||+||..||.++......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999966666788899999999999999866678999985
No 20
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.57 E-value=3.4e-08 Score=109.24 Aligned_cols=49 Identities=24% Similarity=0.665 Sum_probs=43.6
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
......|+||++.|..+ ++++|||.||..||..|+.....||+||..+.
T Consensus 23 Le~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~ 71 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQ 71 (397)
T ss_pred cccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccc
Confidence 44567899999999888 68899999999999999998889999998764
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.57 E-value=4e-08 Score=74.68 Aligned_cols=39 Identities=41% Similarity=1.128 Sum_probs=34.3
Q ss_pred ccccccccCCCCceEecCCCCccchHHHHHHHh--cCCCCCCC
Q 004836 681 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM--QKNLCPIC 721 (728)
Q Consensus 681 C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~--~k~sCPlC 721 (728)
|+||++.+.++ +..++|||.||..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999999887 24889999999999999999 45679998
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.50 E-value=9.6e-08 Score=69.13 Aligned_cols=38 Identities=53% Similarity=1.218 Sum_probs=32.9
Q ss_pred ccccccccCCCCceEecCCCCccchHHHHHHHh-cCCCCCCC
Q 004836 681 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPIC 721 (728)
Q Consensus 681 C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~-~k~sCPlC 721 (728)
|+||++.... ++.++|+|.||..|++.|+. .+..||+|
T Consensus 1 C~iC~~~~~~---~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKD---PVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCC---cEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 8899999443 47889999999999999998 56679998
No 23
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.2e-07 Score=98.91 Aligned_cols=49 Identities=31% Similarity=0.721 Sum_probs=43.5
Q ss_pred CCCCcccccccccCCCCceEecCCCCccchHHHHH-HHhcCCC-CCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQ-WLMQKNL-CPICKTTGLP 727 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~-WL~~k~s-CPlCR~~llp 727 (728)
..+..|.||++....+ ..++|||+||..||.. |-.++.. ||+||+.+.|
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 4578899999998887 8999999999999999 9887766 9999998765
No 24
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.27 E-value=2.7e-07 Score=98.79 Aligned_cols=48 Identities=35% Similarity=0.645 Sum_probs=43.6
Q ss_pred CCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
+....|.||.|.|..+ .++||+|.||.-||+++|..+..||+|+.++.
T Consensus 21 D~lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT 68 (442)
T ss_pred HHHHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccc
Confidence 3456799999999999 88999999999999999999999999998763
No 25
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3.7e-07 Score=102.33 Aligned_cols=47 Identities=34% Similarity=0.596 Sum_probs=39.8
Q ss_pred CCcccccccccCCCCceEecCCCCccchHHHHHHHhcC-----CCCCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-----NLCPICKTTGLP 727 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k-----~sCPlCR~~llp 727 (728)
+..|+|||+....+ ..+.|||+||..||.++|... ..||+||..|.+
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 67799999998887 667799999999999988743 369999988754
No 26
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.24 E-value=5.6e-07 Score=77.37 Aligned_cols=47 Identities=32% Similarity=0.460 Sum_probs=38.3
Q ss_pred CCCcccccccccCCCCceEecCCCCccchHHHHHHHhc-CCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 726 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~-k~sCPlCR~~ll 726 (728)
+...|+||.+.+.++ ++++|||+|++.||.+||.. ...||+|+..+.
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLS 50 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence 356799999999999 89999999999999999998 789999998764
No 27
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.22 E-value=8.9e-07 Score=77.55 Aligned_cols=48 Identities=35% Similarity=0.800 Sum_probs=36.6
Q ss_pred CCcccccccccC-----------CCCc--eEecCCCCccchHHHHHHHhcCCCCCCCCCCC
Q 004836 678 EEPCCICQEEYT-----------DGDN--LGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 725 (728)
Q Consensus 678 e~~C~ICLEefe-----------e~d~--Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~l 725 (728)
.+.|+||...|. .+++ ++.-.|.|.||..||.+||..+..||+||++-
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 466777766554 2333 33337999999999999999999999999864
No 28
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.18 E-value=7.3e-07 Score=93.97 Aligned_cols=46 Identities=28% Similarity=0.684 Sum_probs=42.0
Q ss_pred CCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 724 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ 724 (728)
+....|-||-+.|..+ ..++|||.||.-||+..|..+..||+||.+
T Consensus 23 Ds~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~ 68 (391)
T COG5432 23 DSMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCRED 68 (391)
T ss_pred hhHHHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCcccccc
Confidence 3456799999999998 888999999999999999999999999975
No 29
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=7.4e-07 Score=99.19 Aligned_cols=53 Identities=28% Similarity=0.694 Sum_probs=42.1
Q ss_pred CCCCCcccccccccCCCC---c-----------eEecCCCCccchHHHHHHHh-cCCCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGD---N-----------LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGLP 727 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d---~-----------Vv~LpCGH~FH~~CI~~WL~-~k~sCPlCR~~llp 727 (728)
.....+|+||+.++..-. . -..+||.|+||..|+.+|+. .|-.||+||.++.|
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 445678999999877311 0 23459999999999999999 66699999999876
No 30
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=6.8e-07 Score=89.33 Aligned_cols=45 Identities=31% Similarity=0.775 Sum_probs=40.5
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 722 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR 722 (728)
..+...|+||++.|.++ .+++|+|.||..||..++.....||.||
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred ccccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccC
Confidence 45678899999999999 8899999999999999988556799999
No 31
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.01 E-value=4e-06 Score=65.82 Aligned_cols=38 Identities=32% Similarity=0.833 Sum_probs=22.6
Q ss_pred ccccccccCCCC-ceEecCCCCccchHHHHHHHhcC----CCCC
Q 004836 681 CCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLMQK----NLCP 719 (728)
Q Consensus 681 C~ICLEefee~d-~Vv~LpCGH~FH~~CI~~WL~~k----~sCP 719 (728)
|+||.| |.+++ ..+.|+|||+||.+||.+++... ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 76633 34789999999999999999843 3577
No 32
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=1.4e-06 Score=91.27 Aligned_cols=52 Identities=31% Similarity=0.713 Sum_probs=42.9
Q ss_pred CCCCCCcccccccccCCCC-------ceEecCCCCccchHHHHHHHh--cCCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGD-------NLGILDCGHDFHTNCIKQWLM--QKNLCPICKTTG 725 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d-------~Vv~LpCGH~FH~~CI~~WL~--~k~sCPlCR~~l 725 (728)
...++..|+||-..+.... .+..|.|+|+||..||+-|.. +|.+||.||..+
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 3446778999988877654 567889999999999999965 678999999865
No 33
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=7e-06 Score=95.89 Aligned_cols=47 Identities=26% Similarity=0.676 Sum_probs=40.1
Q ss_pred CCCcccccccccCCCCceEecCCCCccchHHHHHHHh-cCCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGL 726 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~-~k~sCPlCR~~ll 726 (728)
...+|++|-.-+++. +++.|+|+||..||..-+. +...||.|.+..-
T Consensus 642 ~~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred hceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 456799999887776 7889999999999999998 5678999988654
No 34
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=2.3e-06 Score=74.44 Aligned_cols=52 Identities=37% Similarity=0.811 Sum_probs=38.9
Q ss_pred CCCCCCcccccccccCC--------CC--ceEecCCCCccchHHHHHHHhcC---CCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTD--------GD--NLGILDCGHDFHTNCIKQWLMQK---NLCPICKTTG 725 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee--------~d--~Vv~LpCGH~FH~~CI~~WL~~k---~sCPlCR~~l 725 (728)
-...+++|.||.-.|.. +| .++.-.|.|.||..||.+|+..+ ..||+||++.
T Consensus 16 W~~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 16 WDAPDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred EcCCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 34556699999999883 22 22222699999999999999843 4699999864
No 35
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.89 E-value=1.1e-05 Score=64.94 Aligned_cols=42 Identities=31% Similarity=0.845 Sum_probs=32.9
Q ss_pred cccccccccCCCCceEecCCC-----CccchHHHHHHHhcC--CCCCCCC
Q 004836 680 PCCICQEEYTDGDNLGILDCG-----HDFHTNCIKQWLMQK--NLCPICK 722 (728)
Q Consensus 680 ~C~ICLEefee~d~Vv~LpCG-----H~FH~~CI~~WL~~k--~sCPlCR 722 (728)
.|.||++. .+++...++||. |.||..|+.+|+..+ ..||+|+
T Consensus 1 ~CrIC~~~-~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCC-CCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 49999993 344445577885 899999999999754 4899996
No 36
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=6.1e-06 Score=75.55 Aligned_cols=52 Identities=29% Similarity=0.737 Sum_probs=39.0
Q ss_pred CCCCCCCcccccccccCC------------CCc--eEecCCCCccchHHHHHHHhcCCCCCCCCCC
Q 004836 673 EIPSDEEPCCICQEEYTD------------GDN--LGILDCGHDFHTNCIKQWLMQKNLCPICKTT 724 (728)
Q Consensus 673 ~~~~ee~~C~ICLEefee------------~d~--Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ 724 (728)
.-+...+.|+||...+.+ .++ |.--.|.|.||..||.+||+.++.||+|.++
T Consensus 41 aWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 41 AWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 455667889998655431 112 2223799999999999999999999999875
No 37
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.82 E-value=4.2e-06 Score=71.82 Aligned_cols=49 Identities=29% Similarity=0.716 Sum_probs=23.7
Q ss_pred CCcccccccccCCCCc---eEec--CCCCccchHHHHHHHhc---CC--------CCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDN---LGIL--DCGHDFHTNCIKQWLMQ---KN--------LCPICKTTGL 726 (728)
Q Consensus 678 e~~C~ICLEefee~d~---Vv~L--pCGH~FH~~CI~~WL~~---k~--------sCPlCR~~ll 726 (728)
+..|.||++.+.+.++ ++.- .|++.||..|+.+||.. .+ .||.|+++|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 4579999998763332 2222 69999999999999983 11 3999998763
No 38
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.80 E-value=8.7e-06 Score=95.99 Aligned_cols=53 Identities=28% Similarity=0.676 Sum_probs=39.8
Q ss_pred CCCCCCcccccccccCCCC-c---eEecCCCCccchHHHHHHHhc--CCCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGD-N---LGILDCGHDFHTNCIKQWLMQ--KNLCPICKTTGL 726 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d-~---Vv~LpCGH~FH~~CI~~WL~~--k~sCPlCR~~ll 726 (728)
.....++|+||+..+..-| . -++-.|.|+||..|+.+|++. ...||+||.++.
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3456788999998776211 0 134469999999999999994 467999998763
No 39
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=3.6e-06 Score=90.97 Aligned_cols=48 Identities=27% Similarity=0.510 Sum_probs=40.1
Q ss_pred CCCCcccccccccCCCCceEec-CCCCccchHHHHHHHhc-CCCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 726 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~L-pCGH~FH~~CI~~WL~~-k~sCPlCR~~ll 726 (728)
..+..|+|||+.++.. ..+ .|+|.||..||.+-|+. .+.||.||+.+.
T Consensus 41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 3467899999999876 444 59999999999999984 578999999764
No 40
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=2e-05 Score=85.65 Aligned_cols=49 Identities=33% Similarity=0.638 Sum_probs=42.5
Q ss_pred CCCCcccccccccCCCCceEecCCCCc-cchHHHHHHHhcCCCCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGLP 727 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~LpCGH~-FH~~CI~~WL~~k~sCPlCR~~llp 727 (728)
+...+|.|||.+-.+. .+|||.|. .|..|.+..--+.+.||+||+.+.+
T Consensus 288 ~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 3467899999997776 89999998 8999999887788999999998754
No 41
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=4.5e-05 Score=83.42 Aligned_cols=50 Identities=40% Similarity=0.988 Sum_probs=39.0
Q ss_pred CCCCcccccccccCCCC----ceEec-CCCCccchHHHHHHHh--c-----CCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGD----NLGIL-DCGHDFHTNCIKQWLM--Q-----KNLCPICKTTG 725 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d----~Vv~L-pCGH~FH~~CI~~WL~--~-----k~sCPlCR~~l 725 (728)
..+.+|.||+|...+.- ...+| +|.|.||..||++|-. + .+.||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 56788999999987653 12344 5999999999999983 4 46799999754
No 42
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.47 E-value=2.1e-05 Score=91.55 Aligned_cols=51 Identities=20% Similarity=0.349 Sum_probs=44.3
Q ss_pred CCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
.....|+||+..|.+.......+|+|.||..||..|-+.-.+||+||....
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence 345779999999988766666789999999999999999999999998754
No 43
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=2.9e-05 Score=63.83 Aligned_cols=46 Identities=28% Similarity=0.605 Sum_probs=37.7
Q ss_pred CCcccccccccCCCCceEecCCCCc-cchHHHHHHHh-cCCCCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLM-QKNLCPICKTTGL 726 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~-FH~~CI~~WL~-~k~sCPlCR~~ll 726 (728)
.++|.||+|.-.+. +...|||. .|.+|-.+.++ .+..||+||+++.
T Consensus 7 ~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 37799999997776 56689997 78999877666 7889999999763
No 44
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.42 E-value=3.7e-05 Score=65.24 Aligned_cols=42 Identities=31% Similarity=0.753 Sum_probs=23.4
Q ss_pred CcccccccccCCCCceEec-CCCCccchHHHHHHHhcCCCCCCCCCCC
Q 004836 679 EPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTG 725 (728)
Q Consensus 679 ~~C~ICLEefee~d~Vv~L-pCGH~FH~~CI~~WL~~k~sCPlCR~~l 725 (728)
..|.+|.+.+.++ +.| .|.|.||..||.+-+.. .||+|+.++
T Consensus 8 LrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Pa 50 (65)
T PF14835_consen 8 LRCSICFDILKEP---VCLGGCEHIFCSSCIRDCIGS--ECPVCHTPA 50 (65)
T ss_dssp TS-SSS-S--SS----B---SSS--B-TTTGGGGTTT--B-SSS--B-
T ss_pred cCCcHHHHHhcCC---ceeccCccHHHHHHhHHhcCC--CCCCcCChH
Confidence 4699999999888 554 79999999999986653 499999876
No 45
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0001 Score=82.12 Aligned_cols=49 Identities=29% Similarity=0.732 Sum_probs=44.1
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
...++.|.||+..+..+ +.++|||.||..||.+-+.+...||+||..+.
T Consensus 81 ~~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELV 129 (398)
T ss_pred ccchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCcccccccc
Confidence 35678899999999988 88899999999999998888889999998775
No 46
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.36 E-value=8e-05 Score=82.83 Aligned_cols=52 Identities=25% Similarity=0.736 Sum_probs=40.5
Q ss_pred CCCCCCcccccccccCCCCc-eEecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 727 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~-Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~llp 727 (728)
...+.-+|+||||.+..... ++.+.|.|.||..|+.+|. ..+||+||....|
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~p 223 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQSP 223 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcCc
Confidence 34566789999999876532 3455799999999999994 5679999986543
No 47
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.21 E-value=0.00015 Score=77.37 Aligned_cols=53 Identities=21% Similarity=0.621 Sum_probs=43.1
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHh-----------------------cCCCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-----------------------QKNLCPICKTTGL 726 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~-----------------------~k~sCPlCR~~ll 726 (728)
.....-.|.|||--|.+.+....+.|-|.||..|+.++|. .+..||+||..|.
T Consensus 111 nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 111 NNHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 3345667999999999999999999999999999987653 1235999998764
No 48
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.16 E-value=0.00014 Score=79.76 Aligned_cols=46 Identities=33% Similarity=0.763 Sum_probs=37.5
Q ss_pred CcccccccccCCCCceEecCCCCccchHHHHHHHhc--CCCCCCCCCCCCC
Q 004836 679 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--KNLCPICKTTGLP 727 (728)
Q Consensus 679 ~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~--k~sCPlCR~~llp 727 (728)
+.|.||-|. ++.|.+-||||..|..|+..|-.. ..+||.||.+|.-
T Consensus 370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 469999887 334567799999999999999753 5789999998864
No 49
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0014 Score=69.35 Aligned_cols=53 Identities=26% Similarity=0.482 Sum_probs=42.3
Q ss_pred CCCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhc--CCCCCCCCCCCCC
Q 004836 673 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--KNLCPICKTTGLP 727 (728)
Q Consensus 673 ~~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~--k~sCPlCR~~llp 727 (728)
.....+.+|++|-+.-+.+ ....+|+|+||..||..-+.- ..+||.|-..+.+
T Consensus 234 s~~t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred ccccCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 3455678899999998887 245579999999999987663 4689999887753
No 50
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.08 E-value=0.00033 Score=58.14 Aligned_cols=43 Identities=26% Similarity=0.600 Sum_probs=29.6
Q ss_pred CCCCcccccccccCCCCceEecCCCCccchHHHHHHHhc--CCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--KNLCPI 720 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~--k~sCPl 720 (728)
.....|+|.+..|+++ ++...|||+|-++.|.+||.. ...||+
T Consensus 9 ~~~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3467899999999887 556689999999999999953 346999
No 51
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.00036 Score=75.76 Aligned_cols=50 Identities=32% Similarity=0.543 Sum_probs=43.4
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
...++..|+||+..-... +..||+|.-|..||.+.|...+.|=.||+++.
T Consensus 418 p~sEd~lCpICyA~pi~A---vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGPINA---VFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CCcccccCcceecccchh---hccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 446788999998875554 77899999999999999999999999999764
No 52
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.80 E-value=0.00072 Score=82.71 Aligned_cols=53 Identities=32% Similarity=0.594 Sum_probs=41.7
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCC----------CCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----------LCPICKTTGL 726 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~----------sCPlCR~~ll 726 (728)
..+.++.|.||+-+--..-..+.|.|+|+||..|.+..|++.- .||+|+.+|.
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 3456678999988876666678999999999999997666431 5999998863
No 53
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.79 E-value=0.00062 Score=75.91 Aligned_cols=49 Identities=27% Similarity=0.602 Sum_probs=43.1
Q ss_pred CCCCCcccccccccCCCCceEe-cCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGI-LDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~-LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
..++..|+||...+.++ .. +.|||.||..||..|+..+..||.|+..+.
T Consensus 18 ~~~~l~C~~C~~vl~~p---~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDP---VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT 67 (391)
T ss_pred CcccccCccccccccCC---CCCCCCCCcccccccchhhccCcCCcccccccc
Confidence 45668899999999998 44 589999999999999999999999988764
No 54
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.74 E-value=0.00035 Score=75.48 Aligned_cols=50 Identities=26% Similarity=0.607 Sum_probs=41.9
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
.....+|.+|-..|.+.. .+..|-|.||+.||.+.|...+.||+|...|-
T Consensus 12 ~n~~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih 61 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEESKYCPTCDIVIH 61 (331)
T ss_pred cccceehhhccceeecch--hHHHHHHHHHHHHHHHHHHHhccCCccceecc
Confidence 345678999999998872 33469999999999999999999999987653
No 55
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.00069 Score=75.02 Aligned_cols=48 Identities=31% Similarity=0.630 Sum_probs=39.5
Q ss_pred CCCcccccccccCCCCceEecCCCCccchHHHHHHHhcC--------CCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK--------NLCPICKTT 724 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k--------~sCPlCR~~ 724 (728)
....|.||+++....+-++.|||+|+||+.|++.++... -.||-|+..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 346799999998887888999999999999999998732 249887654
No 56
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.60 E-value=0.00099 Score=67.69 Aligned_cols=46 Identities=24% Similarity=0.616 Sum_probs=40.8
Q ss_pred CCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 725 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~l 725 (728)
-.+.|.||.++|+.+ +++.|||.||..|...-++....|-+|-+..
T Consensus 195 IPF~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 195 IPFLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred Cceeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 346799999999999 8889999999999999888888999997653
No 57
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.43 E-value=0.0013 Score=74.65 Aligned_cols=49 Identities=27% Similarity=0.573 Sum_probs=39.7
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHh-----cCCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-----QKNLCPICKTTG 725 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~-----~k~sCPlCR~~l 725 (728)
....+..|.+|.+.-++. +...|.|+||+-||+.++. ..-+||+|-..+
T Consensus 532 enk~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred cccCceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 445667899999997766 7889999999999999876 234799997654
No 58
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.001 Score=70.88 Aligned_cols=88 Identities=25% Similarity=0.371 Sum_probs=50.8
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCCCCH--HHHH---HHhhhccCCCcccCCCCCCCcccccccccCCCCceEecCCCCc-c
Q 004836 630 DVDNMSYEELLALEERIGDVSTGLNE--ETIM---KIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHD-F 703 (728)
Q Consensus 630 DvDn~SyEeLlaLeErig~vstGlSe--E~I~---kllkq~ky~~~e~~~~~ee~~C~ICLEefee~d~Vv~LpCGH~-F 703 (728)
|+++++-..|++...+...-..+..+ +.+. ++++..+... ..........|.||++...+. +.|+|||. -
T Consensus 248 d~Eg~~v~qLke~l~~d~vsy~gCcek~el~d~vtrl~k~~~g~~-~~~s~~~~~LC~ICmDaP~DC---vfLeCGHmVt 323 (350)
T KOG4275|consen 248 DEEGLTVRQLKEILDDDFVSYKGCCEKYELDDRVTRLYKGNDGEQ-HSRSLATRRLCAICMDAPRDC---VFLECGHMVT 323 (350)
T ss_pred ccccchHHHhhhhhhccCCcccchhHHHHHHHHHHHHHhcccccc-cccchhHHHHHHHHhcCCcce---EEeecCcEEe
Confidence 45556666666655544333344432 2222 2222221111 011122267799999998777 89999996 5
Q ss_pred chHHHHHHHhcCCCCCCCCCCC
Q 004836 704 HTNCIKQWLMQKNLCPICKTTG 725 (728)
Q Consensus 704 H~~CI~~WL~~k~sCPlCR~~l 725 (728)
|.+|-+. -+.||+||+.|
T Consensus 324 Ct~CGkr----m~eCPICRqyi 341 (350)
T KOG4275|consen 324 CTKCGKR----MNECPICRQYI 341 (350)
T ss_pred ehhhccc----cccCchHHHHH
Confidence 8888554 34899999865
No 59
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.0017 Score=69.37 Aligned_cols=45 Identities=22% Similarity=0.530 Sum_probs=40.8
Q ss_pred CCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 725 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~l 725 (728)
.+.|-||...|..+ +++.|+|.||..|...-++....|.+|-+.+
T Consensus 241 Pf~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred Cccccccccccccc---hhhcCCceeehhhhccccccCCcceeccccc
Confidence 35699999999999 8999999999999999998889999998754
No 60
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.0065 Score=63.71 Aligned_cols=50 Identities=14% Similarity=0.334 Sum_probs=44.5
Q ss_pred CCCcccccccccCCCCceEec-CCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~L-pCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
.-..|+||.+.+.....+..| +|||+|+.+|+.+.+.....||+|-.++.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence 456799999999998877777 89999999999999999999999987764
No 61
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.84 E-value=0.0046 Score=66.21 Aligned_cols=43 Identities=28% Similarity=0.614 Sum_probs=35.5
Q ss_pred CCcccccccccCCCCceEecC-CCCccchHHHHHHHh-cCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLM-QKNLCPICKT 723 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~Lp-CGH~FH~~CI~~WL~-~k~sCPlCR~ 723 (728)
...|+.|...+..+ +.++ |+|.||.+||..-|. ....||.|-+
T Consensus 274 ~LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 37799999998887 5564 899999999998776 5678999954
No 62
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.82 E-value=0.003 Score=69.68 Aligned_cols=46 Identities=33% Similarity=0.736 Sum_probs=38.5
Q ss_pred CCcccccccccCC-CCceEecCCCCccchHHHHHHHhcC--CCCCCCCC
Q 004836 678 EEPCCICQEEYTD-GDNLGILDCGHDFHTNCIKQWLMQK--NLCPICKT 723 (728)
Q Consensus 678 e~~C~ICLEefee-~d~Vv~LpCGH~FH~~CI~~WL~~k--~sCPlCR~ 723 (728)
+..|..|=|.+-. ++.+-.|||.|+||..|+...|.++ .+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3569999988875 4467888999999999999999865 47999994
No 63
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.0031 Score=69.01 Aligned_cols=43 Identities=23% Similarity=0.596 Sum_probs=32.4
Q ss_pred CCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 725 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~l 725 (728)
....|.||+++..+. +.+||||+-| |+.--. .-..||+||+.|
T Consensus 304 ~p~lcVVcl~e~~~~---~fvpcGh~cc--ct~cs~-~l~~CPvCR~rI 346 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSA---VFVPCGHVCC--CTLCSK-HLPQCPVCRQRI 346 (355)
T ss_pred CCCceEEecCCccce---eeecCCcEEE--chHHHh-hCCCCchhHHHH
Confidence 446699999997775 8899999976 655432 234499999865
No 64
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.49 E-value=0.011 Score=70.44 Aligned_cols=45 Identities=22% Similarity=0.608 Sum_probs=36.6
Q ss_pred CCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 725 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~l 725 (728)
....+|.+|--.++.+ ++...|||.||..|+. .....||.|+.++
T Consensus 838 ~q~skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 838 FQVSKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeeeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 3457899999888877 5677899999999998 4556799998743
No 65
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.44 E-value=0.011 Score=64.49 Aligned_cols=53 Identities=25% Similarity=0.553 Sum_probs=42.2
Q ss_pred cccCCCCCCCcccccccccCCCCceEecCCCCccchHHHHHH--HhcCCCCCCCCCCC
Q 004836 670 LEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQW--LMQKNLCPICKTTG 725 (728)
Q Consensus 670 ~e~~~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~W--L~~k~sCPlCR~~l 725 (728)
..++.+++...|-||-+.++-- ..+||+|..|-.|.... |-.++.||+||++-
T Consensus 53 SaddtDEen~~C~ICA~~~TYs---~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 53 SADDTDEENMNCQICAGSTTYS---ARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccccccceeEEecCCceEE---EeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 3445667778899999986554 78899999999998754 55788999999853
No 66
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.32 E-value=0.0066 Score=58.60 Aligned_cols=36 Identities=25% Similarity=0.569 Sum_probs=29.8
Q ss_pred CCcccccccccCCCCceEecCCC------CccchHHHHHHHh
Q 004836 678 EEPCCICQEEYTDGDNLGILDCG------HDFHTNCIKQWLM 713 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCG------H~FH~~CI~~WL~ 713 (728)
..+|.||++.+.+.+-++.++|| |.||..|+++|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 56799999999984557777777 8899999999943
No 67
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.27 E-value=0.006 Score=54.73 Aligned_cols=34 Identities=26% Similarity=0.730 Sum_probs=27.9
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHH
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIK 709 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~ 709 (728)
..+...|.||-..+.. ......||||+||..|++
T Consensus 75 i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 3456779999999877 456677999999999975
No 68
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.013 Score=60.78 Aligned_cols=49 Identities=29% Similarity=0.666 Sum_probs=40.0
Q ss_pred CCcccccccccCCCCceEecCCCCccchHHHHHHHhc--------CCCCCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--------KNLCPICKTTGLP 727 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~--------k~sCPlCR~~llp 727 (728)
.-.|.+|--.+..+|.+ .|-|-|+||++|+..|-.. ...||-|..+|+|
T Consensus 50 ~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 34599999888887654 6779999999999999763 2359999999986
No 69
>PHA03096 p28-like protein; Provisional
Probab=94.76 E-value=0.015 Score=62.70 Aligned_cols=45 Identities=31% Similarity=0.660 Sum_probs=32.8
Q ss_pred CcccccccccCCC----CceEec-CCCCccchHHHHHHHhcC---CCCCCCCC
Q 004836 679 EPCCICQEEYTDG----DNLGIL-DCGHDFHTNCIKQWLMQK---NLCPICKT 723 (728)
Q Consensus 679 ~~C~ICLEefee~----d~Vv~L-pCGH~FH~~CI~~WL~~k---~sCPlCR~ 723 (728)
..|.||+|..... ..-..| .|.|.||..||..|-..+ .+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 6699999987753 233466 599999999999998743 34555543
No 70
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.72 E-value=0.031 Score=59.16 Aligned_cols=51 Identities=20% Similarity=0.458 Sum_probs=40.2
Q ss_pred CCCCCcccccccccCCCCceEec-CCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~L-pCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
......|+|+..+|......+.| +|||+|...||++.- ....||+|-.+..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccc
Confidence 45667899999999665555555 899999999999972 3557999987653
No 71
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.71 E-value=0.017 Score=69.36 Aligned_cols=37 Identities=22% Similarity=0.581 Sum_probs=29.1
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHH
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWL 712 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL 712 (728)
....+.|.||...+-.. ...+.+|||.||+.||.+-.
T Consensus 814 ~ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 44667899998887653 45677999999999998654
No 72
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.71 E-value=0.028 Score=45.53 Aligned_cols=44 Identities=27% Similarity=0.692 Sum_probs=23.5
Q ss_pred ccccccccCCCC-ceEecCCCCccchHHHHHHHh-cCCCCCCCCCC
Q 004836 681 CCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLM-QKNLCPICKTT 724 (728)
Q Consensus 681 C~ICLEefee~d-~Vv~LpCGH~FH~~CI~~WL~-~k~sCPlCR~~ 724 (728)
|++|.+++...+ .+.--+||+..|..|...-++ ....||-||++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 899999995443 333337999999999998887 47789999985
No 73
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.012 Score=58.38 Aligned_cols=32 Identities=31% Similarity=0.706 Sum_probs=28.2
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccch
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHT 705 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~ 705 (728)
..++.-+|.||||+++.++.+..|||-.+||+
T Consensus 173 L~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 173 LKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred hcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 34456679999999999999999999999996
No 74
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=94.45 E-value=0.03 Score=44.72 Aligned_cols=40 Identities=30% Similarity=0.804 Sum_probs=27.7
Q ss_pred ccccccccCCCCceEecCCC-----CccchHHHHHHHh--cCCCCCCC
Q 004836 681 CCICQEEYTDGDNLGILDCG-----HDFHTNCIKQWLM--QKNLCPIC 721 (728)
Q Consensus 681 C~ICLEefee~d~Vv~LpCG-----H~FH~~CI~~WL~--~k~sCPlC 721 (728)
|-||++.-.+.+. .+.||. -..|..|+.+|+. .+..|++|
T Consensus 1 CrIC~~~~~~~~~-li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEP-LISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCc-eecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 7899999777652 345665 3689999999998 44679998
No 75
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.024 Score=57.08 Aligned_cols=49 Identities=31% Similarity=0.692 Sum_probs=34.6
Q ss_pred CCCcccccccccCCCCc----eEecCCCCccchHHHHHHHhcCC-----------CCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDN----LGILDCGHDFHTNCIKQWLMQKN-----------LCPICKTTG 725 (728)
Q Consensus 677 ee~~C~ICLEefee~d~----Vv~LpCGH~FH~~CI~~WL~~k~-----------sCPlCR~~l 725 (728)
..-.|.||+..--++.. .--..||.-||.-|+..||+.-. .||.|-.++
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi 227 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI 227 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence 34568888776554322 12347999999999999998311 499999876
No 76
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.40 E-value=0.044 Score=54.39 Aligned_cols=47 Identities=26% Similarity=0.653 Sum_probs=34.3
Q ss_pred CCCCCcccccccccCCCCceEecCCCC-----ccchHHHHHHHhcC--CCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGH-----DFHTNCIKQWLMQK--NLCPICKTTG 725 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH-----~FH~~CI~~WL~~k--~sCPlCR~~l 725 (728)
...+..|-||.++..+. .-||.. .-|.+|+.+|+..+ ..|++|+++.
T Consensus 5 s~~~~~CRIC~~~~~~~----~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 5 SLMDKCCWICKDEYDVV----TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCCeeEecCCCCCCc----cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 44567899999885321 246554 45999999999854 4699998753
No 77
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.19 E-value=0.075 Score=63.42 Aligned_cols=43 Identities=37% Similarity=0.864 Sum_probs=35.1
Q ss_pred CcccccccccCCCCceEecCCCCccchHHHHHHHhcC--CCCCCCCCCC
Q 004836 679 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK--NLCPICKTTG 725 (728)
Q Consensus 679 ~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k--~sCPlCR~~l 725 (728)
..|.||++ . +......|+|.||..|+.+-+... ..||+||..+
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 77999999 3 334788999999999999988843 3599999754
No 78
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.0035 Score=69.15 Aligned_cols=50 Identities=26% Similarity=0.545 Sum_probs=43.7
Q ss_pred CCCcccccccccCCC-CceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDG-DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 677 ee~~C~ICLEefee~-d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
-...|.||.+.|+.. +.+..+-|||.+|.+||.+||..+..||.|+.++.
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 346699999999876 66778889999999999999999999999998764
No 79
>PHA02862 5L protein; Provisional
Probab=94.02 E-value=0.041 Score=53.83 Aligned_cols=48 Identities=27% Similarity=0.676 Sum_probs=31.5
Q ss_pred CCcccccccccCCCCce-EecCCCCccchHHHHHHHh--cCCCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQWLM--QKNLCPICKTTG 725 (728)
Q Consensus 678 e~~C~ICLEefee~d~V-v~LpCGH~FH~~CI~~WL~--~k~sCPlCR~~l 725 (728)
.+.|-||+++-++.... .+..--..-|.+|+.+|+. ++..|++||.+.
T Consensus 2 ~diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 2 SDICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CCEEEEecCcCCCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 35799999985443000 0000024689999999998 456799999853
No 80
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.74 E-value=0.033 Score=46.24 Aligned_cols=47 Identities=36% Similarity=0.661 Sum_probs=36.1
Q ss_pred CCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 727 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~llp 727 (728)
.....|..|...-..+ ..++|||+.|..|..- ++-+.||+|-+++..
T Consensus 5 ~~~~~~~~~~~~~~~~---~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 5 QPEQPCVFCGFVGTKG---TVLPCGHLICDNCFPG--ERYNGCPFCGTPFEF 51 (55)
T ss_pred ccceeEEEcccccccc---ccccccceeeccccCh--hhccCCCCCCCcccC
Confidence 3456788887776666 7889999999999554 356789999987753
No 81
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=93.63 E-value=0.046 Score=65.49 Aligned_cols=47 Identities=34% Similarity=0.771 Sum_probs=35.8
Q ss_pred CCCcccccccccCCCCceE-ecCCCCccchHHHHHHHhcC--C-----CCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLG-ILDCGHDFHTNCIKQWLMQK--N-----LCPICKT 723 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv-~LpCGH~FH~~CI~~WL~~k--~-----sCPlCR~ 723 (728)
...+|.||++.+...+.+- .-.|-|+||..||++|-+.. . .||.|+.
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 3456999999998765442 33588999999999998742 1 3999984
No 82
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.068 Score=58.28 Aligned_cols=49 Identities=22% Similarity=0.482 Sum_probs=39.5
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 725 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~l 725 (728)
..+...|+||+.....+ .++..-|-+||..||...+...+.||+--.++
T Consensus 297 ~~~~~~CpvClk~r~Np--tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNP--TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CCccccChhHHhccCCC--ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 34557799999998877 23335799999999999999999999976654
No 83
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.35 E-value=0.074 Score=57.80 Aligned_cols=45 Identities=27% Similarity=0.556 Sum_probs=36.7
Q ss_pred CCCCCcccccccccCCCCceEecCC--CCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDC--GHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpC--GH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
..+..+|+||.+.+..+ +..| ||+-|..|-.+ ..+.||.||.++-
T Consensus 45 ~~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCccc----ceecCCCcEehhhhhhh---hcccCCccccccc
Confidence 44667899999999988 6677 79999999763 5778999998763
No 84
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.86 E-value=0.043 Score=68.20 Aligned_cols=45 Identities=40% Similarity=0.895 Sum_probs=39.3
Q ss_pred CCCCcccccccccC-CCCceEecCCCCccchHHHHHHHhcCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYT-DGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 723 (728)
Q Consensus 676 ~ee~~C~ICLEefe-e~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~ 723 (728)
.+...|.||++.+. .+ .+..|||.||..|+..|+..+..||+|+.
T Consensus 1151 ~~~~~c~ic~dil~~~~---~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQG---GIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred hcccchHHHHHHHHhcC---CeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 34468999999988 44 57789999999999999999999999985
No 85
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=91.64 E-value=0.2 Score=58.67 Aligned_cols=44 Identities=23% Similarity=0.645 Sum_probs=29.3
Q ss_pred CCCCcccccccc-----cCCCCceEecCCCCccchHHHHHHHhcCCCCCCCC
Q 004836 676 SDEEPCCICQEE-----YTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 722 (728)
Q Consensus 676 ~ee~~C~ICLEe-----fee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR 722 (728)
.....|.||... |+.....++..|+++||.+|.+. .+..||.|-
T Consensus 509 ~~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 509 GKGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred cCeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence 346779999443 22232345668999999999554 445599993
No 86
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.52 E-value=0.075 Score=57.54 Aligned_cols=42 Identities=21% Similarity=0.520 Sum_probs=29.4
Q ss_pred cccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCC
Q 004836 680 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 725 (728)
Q Consensus 680 ~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~l 725 (728)
.|.-|--.+..- -+.++|+|+||.+|... ...+.||.|-..+
T Consensus 92 fCd~Cd~PI~IY--GRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIAIY--GRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eecccCCcceee--ecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 466665444432 25669999999999764 3467899997655
No 87
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.30 E-value=0.13 Score=56.42 Aligned_cols=50 Identities=22% Similarity=0.462 Sum_probs=35.3
Q ss_pred CCCCcccccccccCCCCc-eEecCCCCccchHHHHHHHh-cCCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTG 725 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~-Vv~LpCGH~FH~~CI~~WL~-~k~sCPlCR~~l 725 (728)
++++.|++|+|++...|+ ..-.+||-..|.-|....-. -...||.||+..
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 345559999999987664 34458998878888655433 245799999753
No 88
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=90.48 E-value=0.55 Score=52.33 Aligned_cols=26 Identities=27% Similarity=0.908 Sum_probs=20.1
Q ss_pred CCCccchHHHHHHHhc-------------CCCCCCCCCC
Q 004836 699 CGHDFHTNCIKQWLMQ-------------KNLCPICKTT 724 (728)
Q Consensus 699 CGH~FH~~CI~~WL~~-------------k~sCPlCR~~ 724 (728)
|.-..|.+|+-+|+.. +-.||+||++
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~ 349 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAK 349 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccc
Confidence 4566799999998863 2359999986
No 89
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=90.37 E-value=0.14 Score=55.01 Aligned_cols=45 Identities=33% Similarity=0.786 Sum_probs=38.0
Q ss_pred CcccccccccCCCC-ceEecCCCCccchHHHHHHHhcCCCCCCCCC
Q 004836 679 EPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLMQKNLCPICKT 723 (728)
Q Consensus 679 ~~C~ICLEefee~d-~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~ 723 (728)
..|+||.+.+.... .+..++|||..|..|........-.||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 34999999987654 3567799999999999998877788999988
No 90
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=90.25 E-value=0.17 Score=39.89 Aligned_cols=41 Identities=32% Similarity=0.831 Sum_probs=24.1
Q ss_pred ccccccccCCCCceEecCCCCccchHHHHHHHhcCC--CCCCC
Q 004836 681 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN--LCPIC 721 (728)
Q Consensus 681 C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~--sCPlC 721 (728)
|.+|.+....+..-....|+=.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 778888888873222225999999999999999665 79998
No 91
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=88.62 E-value=0.12 Score=61.36 Aligned_cols=45 Identities=29% Similarity=0.658 Sum_probs=38.1
Q ss_pred CCcccccccccCCCCceEecCCCCccchHHHHHHHhcCC---CCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN---LCPICKTTG 725 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~---sCPlCR~~l 725 (728)
..+|+||+..+.++ ..++|-|.||..|+..-|..++ .||+|+..+
T Consensus 21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 45699999999998 7889999999999998777544 699999654
No 92
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=87.70 E-value=0.47 Score=57.01 Aligned_cols=49 Identities=29% Similarity=0.682 Sum_probs=36.7
Q ss_pred CCCCcccccccccCCCCceEecCCCC-----ccchHHHHHHHhc--CCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGILDCGH-----DFHTNCIKQWLMQ--KNLCPICKTTG 725 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~LpCGH-----~FH~~CI~~WL~~--k~sCPlCR~~l 725 (728)
++...|.||..+=..++.+ .-||.. ..|++|+..|+.. +..|-+|+.+.
T Consensus 10 ~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred ccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence 4558899999886666443 336653 4899999999994 45699999865
No 93
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=87.22 E-value=0.88 Score=46.72 Aligned_cols=42 Identities=26% Similarity=0.690 Sum_probs=29.4
Q ss_pred CCCcccccccc-----cCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCC
Q 004836 677 DEEPCCICQEE-----YTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 723 (728)
Q Consensus 677 ee~~C~ICLEe-----fee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~ 723 (728)
....|-||-++ |.....+..-.|+-+||..|.. +..||-|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 45789999863 2233334455799999999965 266999953
No 94
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=87.18 E-value=0.37 Score=51.08 Aligned_cols=49 Identities=31% Similarity=0.679 Sum_probs=36.3
Q ss_pred CCCcccccccccCCCCc-eEecCCC-----CccchHHHHHHHh--cCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDN-LGILDCG-----HDFHTNCIKQWLM--QKNLCPICKTTG 725 (728)
Q Consensus 677 ee~~C~ICLEefee~d~-Vv~LpCG-----H~FH~~CI~~WL~--~k~sCPlCR~~l 725 (728)
++..|-||+++..+... ....+|. +..|..|+..|+. .+..|.+|....
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~ 133 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFF 133 (323)
T ss_pred CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccc
Confidence 35789999998765432 2355664 5689999999999 456799998754
No 95
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.15 E-value=0.25 Score=52.46 Aligned_cols=52 Identities=27% Similarity=0.555 Sum_probs=36.3
Q ss_pred CCCCCCcccccccccCCCCce-EecCCC-----CccchHHHHHHHhcCC--------CCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNL-GILDCG-----HDFHTNCIKQWLMQKN--------LCPICKTTG 725 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~V-v~LpCG-----H~FH~~CI~~WL~~k~--------sCPlCR~~l 725 (728)
..+.+..|-||+..-++.-.. =+-||. |..|..|+..|+..|. .||-|+++-
T Consensus 16 ~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 16 NQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 344566789999985554221 112663 7899999999998654 499999853
No 96
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=87.13 E-value=0.29 Score=51.62 Aligned_cols=46 Identities=24% Similarity=0.697 Sum_probs=34.2
Q ss_pred CCCcccccccccC-CCCceEec--C-CCCccchHHHHHHHhcC-CCCC--CCCC
Q 004836 677 DEEPCCICQEEYT-DGDNLGIL--D-CGHDFHTNCIKQWLMQK-NLCP--ICKT 723 (728)
Q Consensus 677 ee~~C~ICLEefe-e~d~Vv~L--p-CGH~FH~~CI~~WL~~k-~sCP--lCR~ 723 (728)
.+..|+||..+.- .++ +..| | |-|..|..|+++.|... ..|| -|-+
T Consensus 9 ~d~~CPvCksDrYLnPd-ik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPD-IKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCC-eEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 4567999987744 444 3333 5 99999999999999865 5699 6643
No 97
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=86.87 E-value=0.34 Score=57.91 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=36.1
Q ss_pred CCCCcccccccccCCCC-ceEecC---CCCccchHHHHHHHhc------CCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGD-NLGILD---CGHDFHTNCIKQWLMQ------KNLCPICKTTG 725 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d-~Vv~Lp---CGH~FH~~CI~~WL~~------k~sCPlCR~~l 725 (728)
.+...|.||.-++..++ ....++ |+|.||..||..|+.+ +..|++|...+
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 34567888877777633 234444 9999999999999873 34589998754
No 98
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.42 E-value=0.34 Score=50.17 Aligned_cols=39 Identities=28% Similarity=0.688 Sum_probs=29.1
Q ss_pred ccccccccCCCCceEecCCCCc-cchHHHHHHHhcCCCCCCCCCCCC
Q 004836 681 CCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 681 C~ICLEefee~d~Vv~LpCGH~-FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
|.+|-+. .-.|..+||.|. +|..|-.. ...||+|+....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 8888776 444778899976 88888554 456999998653
No 99
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=86.41 E-value=0.83 Score=44.44 Aligned_cols=47 Identities=28% Similarity=0.589 Sum_probs=37.8
Q ss_pred CCCcccccccccCCCCceEec-C---CCCccchHHHHHHHhc---CCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGIL-D---CGHDFHTNCIKQWLMQ---KNLCPICKTTGL 726 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~L-p---CGH~FH~~CI~~WL~~---k~sCPlCR~~ll 726 (728)
...+|-||.|.-.+. .-| | ||-..|..|.-..++. ...||+||+...
T Consensus 79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence 567899999998877 455 2 9999999999887773 567999998754
No 100
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.25 E-value=0.35 Score=54.32 Aligned_cols=39 Identities=38% Similarity=0.809 Sum_probs=29.4
Q ss_pred CCCcccccccccCCC-CceEecCCCCccchHHHHHHHhcC
Q 004836 677 DEEPCCICQEEYTDG-DNLGILDCGHDFHTNCIKQWLMQK 715 (728)
Q Consensus 677 ee~~C~ICLEefee~-d~Vv~LpCGH~FH~~CI~~WL~~k 715 (728)
...+|.||+.+.... +....+.|+|.||..|+++.+..+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 467899999444443 444456899999999999998843
No 101
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=85.11 E-value=0.32 Score=39.46 Aligned_cols=31 Identities=29% Similarity=0.725 Sum_probs=23.5
Q ss_pred ecCCC-CccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 696 ILDCG-HDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 696 ~LpCG-H~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
.+.|. |..|..|+..-|.....||+|++++.
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred eeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 55676 99999999999999999999998764
No 102
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.64 E-value=0.59 Score=55.86 Aligned_cols=27 Identities=33% Similarity=0.749 Sum_probs=24.1
Q ss_pred eEecCCCCccchHHHHHHHhcCCCCCC
Q 004836 694 LGILDCGHDFHTNCIKQWLMQKNLCPI 720 (728)
Q Consensus 694 Vv~LpCGH~FH~~CI~~WL~~k~sCPl 720 (728)
.++..|+|+.|..|.+.|++....||.
T Consensus 1043 ~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1043 NFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhhccccccccHHHHHHHHhcCCcCCC
Confidence 346689999999999999999999985
No 103
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.58 E-value=0.95 Score=50.77 Aligned_cols=47 Identities=21% Similarity=0.429 Sum_probs=39.5
Q ss_pred CcccccccccCCCCceEecCCCCccchHHHHHHHhcC---CCCCCCCCCC
Q 004836 679 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK---NLCPICKTTG 725 (728)
Q Consensus 679 ~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k---~sCPlCR~~l 725 (728)
+.|+|=.+.-.+.+....|.|||+.+++-|.+.-+.. ..||.|=...
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 6799988888888888999999999999999987743 4699996544
No 104
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.42 E-value=2.3 Score=46.20 Aligned_cols=27 Identities=22% Similarity=0.655 Sum_probs=21.6
Q ss_pred CCCccchHHHHHHHh-------------cCCCCCCCCCCC
Q 004836 699 CGHDFHTNCIKQWLM-------------QKNLCPICKTTG 725 (728)
Q Consensus 699 CGH~FH~~CI~~WL~-------------~k~sCPlCR~~l 725 (728)
|.-..|.+|+.+|+. ++.+||+||+..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 677899999998875 345799999853
No 105
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=81.32 E-value=1.7 Score=36.19 Aligned_cols=34 Identities=26% Similarity=0.901 Sum_probs=26.6
Q ss_pred CCCcccccccccCCCCceEec-CCCCccchHHHHH
Q 004836 677 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQ 710 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~L-pCGH~FH~~CI~~ 710 (728)
....|.+|-+.|++++.+++- .||-.||+.|...
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 456799999999865555555 6999999999544
No 106
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=80.16 E-value=3.7 Score=49.55 Aligned_cols=41 Identities=22% Similarity=0.569 Sum_probs=30.0
Q ss_pred CcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCC
Q 004836 679 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPI 720 (728)
Q Consensus 679 ~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPl 720 (728)
..|++|-..+.. ..+-+-.|||.-|..|+++|+....-||.
T Consensus 780 ~~CtVC~~vi~G-~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG-VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee-eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 367777555432 22333369999999999999998888876
No 107
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.45 E-value=0.69 Score=54.45 Aligned_cols=40 Identities=25% Similarity=0.533 Sum_probs=29.9
Q ss_pred CCcccccccccCCCC-ceEecCCCCccchHHHHHHHhcCCCCC
Q 004836 678 EEPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLMQKNLCP 719 (728)
Q Consensus 678 e~~C~ICLEefee~d-~Vv~LpCGH~FH~~CI~~WL~~k~sCP 719 (728)
...|.||+..|.... .-+.|.|||+.|..|+..... .+||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC
Confidence 455999988877543 236778999999999998654 4566
No 108
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.96 E-value=1.6 Score=49.71 Aligned_cols=39 Identities=33% Similarity=0.676 Sum_probs=32.4
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK 715 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k 715 (728)
......|-||.+.+.. .+..+.|||.||..|+...+..+
T Consensus 67 ~~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred CCccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhhe
Confidence 3456789999999876 55778999999999999998753
No 109
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.78 E-value=2.2 Score=45.44 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=31.1
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHh
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM 713 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~ 713 (728)
...-+.|++||..+.++ ++.+=||+||++||.+++.
T Consensus 40 iK~FdcCsLtLqPc~dP---vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDP---VITPDGYLFDREAILEYIL 75 (303)
T ss_pred cCCcceeeeecccccCC---ccCCCCeeeeHHHHHHHHH
Confidence 34456689999999999 8999999999999999875
No 110
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.04 E-value=1.4 Score=53.14 Aligned_cols=45 Identities=31% Similarity=0.660 Sum_probs=33.7
Q ss_pred CCCCcccccccccCCC----CceEecCCCCccchHHHHHHHhcCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPIC 721 (728)
Q Consensus 676 ~ee~~C~ICLEefee~----d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlC 721 (728)
..+..|.-|++..... +.++.+.|||.||..|+..-..+.+ |-.|
T Consensus 782 ~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 782 SVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred eehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 3445799999987632 4578889999999999987766554 5554
No 111
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=71.06 E-value=4.3 Score=32.93 Aligned_cols=43 Identities=19% Similarity=0.376 Sum_probs=21.6
Q ss_pred CcccccccccCCCCceEecCCCCccchHHHHHHHhc---CC--CCCCCCCC
Q 004836 679 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ---KN--LCPICKTT 724 (728)
Q Consensus 679 ~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~---k~--sCPlCR~~ 724 (728)
..|+|....+..+ ++...|.|.-|.+ +..||.. +. .||+|.++
T Consensus 3 L~CPls~~~i~~P--~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE--EEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC--ccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 3699999888776 5566899986543 4455552 22 59999864
No 112
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=68.95 E-value=4.6 Score=44.60 Aligned_cols=51 Identities=20% Similarity=0.334 Sum_probs=38.2
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 724 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ 724 (728)
.......|-.|.++.......++-.|.|+||.+|-.---..-..||-|...
T Consensus 326 ~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh~ 376 (378)
T KOG2807|consen 326 EYNGSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEHK 376 (378)
T ss_pred ccCCCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCCC
Confidence 333455699998888887777777899999999965443444679999754
No 113
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.61 E-value=2.5 Score=45.83 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=29.7
Q ss_pred CCCcccccccccCCCCceEec-CCCCccchHHHHHHHhcCC
Q 004836 677 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKN 716 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~L-pCGH~FH~~CI~~WL~~k~ 716 (728)
.-..|.+|.|.+++..-|-+- -=.|+||.-|-++-++++.
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhc
Confidence 346799999999988433222 1369999999999998654
No 114
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.48 E-value=7 Score=44.10 Aligned_cols=42 Identities=24% Similarity=0.559 Sum_probs=29.8
Q ss_pred CcccccccccCC---CCceEecCCCCccchHHHHHHHhcCCCCCCC
Q 004836 679 EPCCICQEEYTD---GDNLGILDCGHDFHTNCIKQWLMQKNLCPIC 721 (728)
Q Consensus 679 ~~C~ICLEefee---~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlC 721 (728)
..|++|.-.++. ...+.+. |||.||..|...|......|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 347777655543 3234444 99999999999998888877555
No 115
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=67.45 E-value=2.7 Score=43.91 Aligned_cols=45 Identities=24% Similarity=0.775 Sum_probs=37.4
Q ss_pred CCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 722 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR 722 (728)
+....|.+|.+-...+ +++-.|+-.||..|+.+.+.+...||.|.
T Consensus 179 dnlk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 179 DNLKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCchh
Confidence 3456799999987766 34557999999999999999999999993
No 116
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.09 E-value=2.7 Score=49.23 Aligned_cols=44 Identities=32% Similarity=0.892 Sum_probs=36.5
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 725 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~l 725 (728)
......|.||+++. ..+..+|. |..|+.+|+..+..||+|++.+
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~ 519 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYM 519 (543)
T ss_pred hcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhh
Confidence 34567799999998 33677888 8999999999999999998754
No 117
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=63.72 E-value=8.5 Score=46.17 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=25.4
Q ss_pred CCcccccccccCCCCceEecCCCCccchHHHHHHHhc----CC--CCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ----KN--LCPICKTTG 725 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~----k~--sCPlCR~~l 725 (728)
-..|+||.-.+..+ ++...|+|+=|.+- .|+.+ +. .||+|.+.+
T Consensus 306 SL~CPl~~~Rm~~P--~r~~~CkHlQcFD~--~~~lq~n~~~pTW~CPVC~~~~ 355 (636)
T KOG2169|consen 306 SLNCPLSKMRMSLP--ARGHTCKHLQCFDA--LSYLQMNEQKPTWRCPVCQKAA 355 (636)
T ss_pred EecCCcccceeecC--Ccccccccceecch--hhhHHhccCCCeeeCccCCccc
Confidence 35688887775544 24445666554443 23331 12 499998765
No 118
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=59.88 E-value=6.5 Score=43.47 Aligned_cols=48 Identities=25% Similarity=0.426 Sum_probs=37.7
Q ss_pred CcccccccccCCCCc-eEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 679 EPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 679 ~~C~ICLEefee~d~-Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
..|+||.+.....+. ..-.+|++..|..|...-......||.||++..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 579999998754432 233378999999999998888999999998654
No 119
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.02 E-value=3.4 Score=45.09 Aligned_cols=53 Identities=30% Similarity=0.525 Sum_probs=42.6
Q ss_pred CCCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004836 673 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 727 (728)
Q Consensus 673 ~~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~llp 727 (728)
....+...|-||...+..++ ..--|.|.||..|...|....+.||.||..+.+
T Consensus 100 ~~~~~~~~~~~~~g~l~vpt--~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 100 GFQQDHDICYICYGKLTVPT--RIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred cccCCccceeeeeeeEEecc--cccCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 34556778999999988762 122499999999999999999999999986643
No 120
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=56.56 E-value=6.3 Score=36.11 Aligned_cols=39 Identities=26% Similarity=0.665 Sum_probs=30.5
Q ss_pred CCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLPT 728 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~llpT 728 (728)
...|-||-..+... ||.||..|..+ +..|.+|-+.|+.|
T Consensus 44 ~~~C~~CK~~v~q~--------g~~YCq~CAYk----kGiCamCGKki~dt 82 (90)
T PF10235_consen 44 SSKCKICKTKVHQP--------GAKYCQTCAYK----KGICAMCGKKILDT 82 (90)
T ss_pred CccccccccccccC--------CCccChhhhcc----cCcccccCCeeccc
Confidence 45799998776553 68899999654 77899999888754
No 121
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=55.78 E-value=5.9 Score=42.71 Aligned_cols=47 Identities=26% Similarity=0.596 Sum_probs=34.5
Q ss_pred CcccccccccCCCCceEec----CCCCccchHHHHHHHhc---------CCCCCCCCCCC
Q 004836 679 EPCCICQEEYTDGDNLGIL----DCGHDFHTNCIKQWLMQ---------KNLCPICKTTG 725 (728)
Q Consensus 679 ~~C~ICLEefee~d~Vv~L----pCGH~FH~~CI~~WL~~---------k~sCPlCR~~l 725 (728)
..|-||.+++.+.+..+.+ .|.-++|..|+..-+.. ...||.|++-+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 5799999999655544333 49999999999984431 33599999743
No 122
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=54.69 E-value=8.4 Score=42.48 Aligned_cols=45 Identities=24% Similarity=0.444 Sum_probs=36.3
Q ss_pred CCcccccccccCCCCceEecCCCCccchHHHHHHHhc---CCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ---KNLCPICK 722 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~---k~sCPlCR 722 (728)
.+.|++--+..++.+..+.|.|||+.-.+-+...-+. ...||.|=
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 3679998888888777889999999999998886553 23599994
No 123
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.00 E-value=18 Score=34.39 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=34.7
Q ss_pred CCcccccccccCCCC-----------ceEecCCCCccchHHHHHHHhcCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGD-----------NLGILDCGHDFHTNCIKQWLMQKNLCPICKT 723 (728)
Q Consensus 678 e~~C~ICLEefee~d-----------~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~ 723 (728)
...|--|+..|.+.. ......|++.||.+|=.-+-+.-..||-|..
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCIH 111 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCCC
Confidence 356999999886531 1224579999999998887777778999964
No 125
>PLN02189 cellulose synthase
Probab=45.77 E-value=18 Score=45.61 Aligned_cols=49 Identities=31% Similarity=0.549 Sum_probs=34.2
Q ss_pred CCCcccccccccCC---CCc-eEecCCCCccchHHHHHHHh-cCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTD---GDN-LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTG 725 (728)
Q Consensus 677 ee~~C~ICLEefee---~d~-Vv~LpCGH~FH~~CI~~WL~-~k~sCPlCR~~l 725 (728)
....|.||-+++.. ++. |.+-.|+--.|+.|.+-=-+ .+..||-||+.-
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y 86 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRY 86 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCch
Confidence 45689999999763 332 33446998899999853222 456799999853
No 126
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=43.16 E-value=3.1 Score=36.44 Aligned_cols=39 Identities=28% Similarity=0.571 Sum_probs=22.0
Q ss_pred CcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCC
Q 004836 679 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 725 (728)
Q Consensus 679 ~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~l 725 (728)
..|++|..+++-.. +|.+|..|-.. +.....||-|.+++
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHH
Confidence 46999988865431 77788888665 34556799998876
No 127
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.69 E-value=22 Score=38.31 Aligned_cols=48 Identities=19% Similarity=0.361 Sum_probs=35.6
Q ss_pred CCCcccccccccCCCCceEec-CCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~L-pCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
..+.|+|---++........| .|||+|-..-+++. ....|++|.....
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~ 158 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQ 158 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCccc
Confidence 346799877777665554444 89999999988875 3567999987653
No 128
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.54 E-value=12 Score=36.43 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=15.5
Q ss_pred cccccccCCCCceEecCCCCccchH
Q 004836 682 CICQEEYTDGDNLGILDCGHDFHTN 706 (728)
Q Consensus 682 ~ICLEefee~d~Vv~LpCGH~FH~~ 706 (728)
-||+.. .+.|....|||.||..
T Consensus 61 fi~qs~---~~rv~rcecghsf~d~ 82 (165)
T COG4647 61 FICQSA---QKRVIRCECGHSFGDY 82 (165)
T ss_pred EEEecc---cccEEEEeccccccCh
Confidence 467665 3346777899999964
No 129
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=41.94 E-value=77 Score=36.73 Aligned_cols=32 Identities=38% Similarity=0.894 Sum_probs=19.9
Q ss_pred CCcccccccccCCCCc----eEecCCCCccchHHHHH
Q 004836 678 EEPCCICQEEYTDGDN----LGILDCGHDFHTNCIKQ 710 (728)
Q Consensus 678 e~~C~ICLEefee~d~----Vv~LpCGH~FH~~CI~~ 710 (728)
.-.|+||.. |..... +++=-|||.-|.+|..+
T Consensus 128 ~C~C~iC~k-fD~~~n~~~Wi~Cd~CgH~cH~dCALr 163 (446)
T PF07227_consen 128 RCMCCICSK-FDDNKNTCSWIGCDVCGHWCHLDCALR 163 (446)
T ss_pred cCCccccCC-cccCCCCeeEEeccCCCceehhhhhcc
Confidence 345788855 543222 22225999999999654
No 130
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=41.92 E-value=15 Score=28.99 Aligned_cols=44 Identities=25% Similarity=0.598 Sum_probs=30.7
Q ss_pred cccccccccCCCCceEecCCCCccchHHHHHHHh------cCCCCCCCCC
Q 004836 680 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM------QKNLCPICKT 723 (728)
Q Consensus 680 ~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~------~k~sCPlCR~ 723 (728)
.|.||.......+.|..-.|+..||..|+..-.. ..-.||.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 3889999555554455557999999999985433 1346888853
No 131
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=40.85 E-value=9.1 Score=43.37 Aligned_cols=28 Identities=29% Similarity=0.787 Sum_probs=0.0
Q ss_pred eEecCCCCccchHHHHHHHhc------CCCCCCCCCC
Q 004836 694 LGILDCGHDFHTNCIKQWLMQ------KNLCPICKTT 724 (728)
Q Consensus 694 Vv~LpCGH~FH~~CI~~WL~~------k~sCPlCR~~ 724 (728)
-+-|.|||++... .|-.. ...||+||..
T Consensus 304 ~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 304 WVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -------------------------------------
T ss_pred eeeccccceeeec---ccccccccccccccCCCcccc
Confidence 4678899987753 56542 4579999974
No 132
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=39.01 E-value=28 Score=38.63 Aligned_cols=52 Identities=25% Similarity=0.497 Sum_probs=34.0
Q ss_pred CCCCCCcccccccccCC-----CCc-----------eEecCCCCccchHHHHHHHhc---------CCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTD-----GDN-----------LGILDCGHDFHTNCIKQWLMQ---------KNLCPICKTTG 725 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee-----~d~-----------Vv~LpCGH~FH~~CI~~WL~~---------k~sCPlCR~~l 725 (728)
....+.+|++|+..=.. +.+ -...||||+--.+-.+-|-.. +..||.|-+.+
T Consensus 337 ~g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L 413 (429)
T KOG3842|consen 337 TGQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQL 413 (429)
T ss_pred cCcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhh
Confidence 34456789999875220 000 123489998888888888652 34699998755
No 133
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=38.20 E-value=42 Score=28.49 Aligned_cols=46 Identities=20% Similarity=0.486 Sum_probs=30.4
Q ss_pred cccccccccCCCC-ceEecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004836 680 PCCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 727 (728)
Q Consensus 680 ~C~ICLEefee~d-~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~llp 727 (728)
.|-.|-.++..+. +..+-.=...||.+|....| +..||-|--.+++
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 3667777766543 22221112359999999977 7889999887764
No 134
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.08 E-value=8.8 Score=37.66 Aligned_cols=43 Identities=33% Similarity=0.958 Sum_probs=25.7
Q ss_pred CCCCCcccccccc-cCCCCceEecCCCCc-------cchHHHHHHHhcCC----CCCCCCCC
Q 004836 675 PSDEEPCCICQEE-YTDGDNLGILDCGHD-------FHTNCIKQWLMQKN----LCPICKTT 724 (728)
Q Consensus 675 ~~ee~~C~ICLEe-fee~d~Vv~LpCGH~-------FH~~CI~~WL~~k~----sCPlCR~~ 724 (728)
..++.+|-||+.. |.++ |||. ||..|--+.-.+.+ .|-+|++.
T Consensus 62 v~ddatC~IC~KTKFADG-------~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFADG-------CGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred cCcCcchhhhhhcccccc-------cCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 4567789999875 4455 6664 55555443322222 48888763
No 135
>PLN02436 cellulose synthase A
Probab=38.01 E-value=29 Score=43.93 Aligned_cols=49 Identities=27% Similarity=0.580 Sum_probs=34.2
Q ss_pred CCCcccccccccC---CCCc-eEecCCCCccchHHHHHHHh-cCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYT---DGDN-LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTG 725 (728)
Q Consensus 677 ee~~C~ICLEefe---e~d~-Vv~LpCGH~FH~~CI~~WL~-~k~sCPlCR~~l 725 (728)
....|-||=+++. +++. |.+-.|+--.|+.|.+-=-+ .+..||-||+.-
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y 88 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCch
Confidence 4568999999975 3433 33446998899999853222 456799999853
No 136
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=36.85 E-value=33 Score=43.48 Aligned_cols=48 Identities=21% Similarity=0.453 Sum_probs=34.2
Q ss_pred CCCcccccccccCCC---Cc-eEecCCCCccchHHHHH-HHhcCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDG---DN-LGILDCGHDFHTNCIKQ-WLMQKNLCPICKTT 724 (728)
Q Consensus 677 ee~~C~ICLEefee~---d~-Vv~LpCGH~FH~~CI~~-WL~~k~sCPlCR~~ 724 (728)
....|-||=+++... +. |.+-.|+-=.|+.|..= .-+.+..||-||+.
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktr 68 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTK 68 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCc
Confidence 456899999997643 32 44557998899999852 22245679999975
No 137
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.80 E-value=17 Score=41.45 Aligned_cols=37 Identities=19% Similarity=0.417 Sum_probs=28.0
Q ss_pred CCCCcccccccccCCC---CceEecCCCCccchHHHHHHH
Q 004836 676 SDEEPCCICQEEYTDG---DNLGILDCGHDFHTNCIKQWL 712 (728)
Q Consensus 676 ~ee~~C~ICLEefee~---d~Vv~LpCGH~FH~~CI~~WL 712 (728)
.....|+-|.-.++.. .++.++.|+|.||.-|-....
T Consensus 366 ~N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l~ 405 (445)
T KOG1814|consen 366 SNSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELLY 405 (445)
T ss_pred hcCCCCCcccceeecCCCccceeeccccccceeehhhhcC
Confidence 3456688887776654 478888999999999987644
No 138
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.76 E-value=7.7 Score=41.42 Aligned_cols=48 Identities=33% Similarity=0.726 Sum_probs=36.5
Q ss_pred CCCcccccccccCCC-Cce--EecC--------CCCccchHHHHHHHhcC-CCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDG-DNL--GILD--------CGHDFHTNCIKQWLMQK-NLCPICKTT 724 (728)
Q Consensus 677 ee~~C~ICLEefee~-d~V--v~Lp--------CGH~FH~~CI~~WL~~k-~sCPlCR~~ 724 (728)
....|.||...|... ... ..+. |||..|..|+..-+.+. ..||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 446799999999843 222 3335 99999999999988765 479999863
No 139
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=36.09 E-value=21 Score=42.40 Aligned_cols=36 Identities=28% Similarity=0.661 Sum_probs=26.0
Q ss_pred CCCCcccccccccCC---CC-------ceEecCCCCccchHHHHHH
Q 004836 676 SDEEPCCICQEEYTD---GD-------NLGILDCGHDFHTNCIKQW 711 (728)
Q Consensus 676 ~ee~~C~ICLEefee---~d-------~Vv~LpCGH~FH~~CI~~W 711 (728)
.....|+||.|.|++ .+ ..+.+.-|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchH
Confidence 566789999999983 11 1234446899999998753
No 140
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=36.05 E-value=20 Score=31.29 Aligned_cols=12 Identities=33% Similarity=1.049 Sum_probs=8.9
Q ss_pred ccchHHHHHHHh
Q 004836 702 DFHTNCIKQWLM 713 (728)
Q Consensus 702 ~FH~~CI~~WL~ 713 (728)
-||+.|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999986
No 141
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=35.78 E-value=34 Score=24.55 Aligned_cols=38 Identities=21% Similarity=0.436 Sum_probs=24.5
Q ss_pred cccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 680 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 680 ~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
.|..|-+.+...+.+.. .=+..||..| ..|..|+..|.
T Consensus 1 ~C~~C~~~i~~~~~~~~-~~~~~~H~~C--------f~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELVLR-ALGKVWHPEC--------FKCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEEEE-eCCccccccC--------CCCcccCCcCc
Confidence 37888888776533322 2366788776 35788877653
No 142
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=35.75 E-value=26 Score=29.01 Aligned_cols=42 Identities=26% Similarity=0.585 Sum_probs=20.6
Q ss_pred ccccccccCCCC-------ceEecCCCCccchHHHHHHHhcCCCCCCCC
Q 004836 681 CCICQEEYTDGD-------NLGILDCGHDFHTNCIKQWLMQKNLCPICK 722 (728)
Q Consensus 681 C~ICLEefee~d-------~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR 722 (728)
|--|+..|.... ....-.|++.||.+|=.---+.-..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 555666666542 123336999999999443223345799884
No 143
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=33.66 E-value=22 Score=28.82 Aligned_cols=37 Identities=19% Similarity=0.619 Sum_probs=21.7
Q ss_pred CCcccccccccCCCCceEecCCCCccchHHHHHHHhc--CCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--KNLCPICKTT 724 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~--k~sCPlCR~~ 724 (728)
...|+.|-+++... . +...|.+.-... .-.||+|...
T Consensus 2 ~f~CP~C~~~~~~~----~------L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSES----S------LVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCHH----H------HHHHHHhHCcCCCCCccCCCchhh
Confidence 56799999865543 1 223344433332 3469999764
No 144
>PLN02400 cellulose synthase
Probab=32.91 E-value=33 Score=43.59 Aligned_cols=49 Identities=20% Similarity=0.448 Sum_probs=34.2
Q ss_pred CCCcccccccccCCCC---c-eEecCCCCccchHHHHH-HHhcCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGD---N-LGILDCGHDFHTNCIKQ-WLMQKNLCPICKTTG 725 (728)
Q Consensus 677 ee~~C~ICLEefee~d---~-Vv~LpCGH~FH~~CI~~-WL~~k~sCPlCR~~l 725 (728)
....|-||=+++.... . |.+-.|+--.|+.|..= .-+....||-||+.-
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrY 88 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRY 88 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcc
Confidence 4568999999976433 2 44557998899999842 112345799999753
No 145
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.06 E-value=22 Score=42.82 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=29.9
Q ss_pred CCcccccccccC-CCCceEecCCCCccchHHHHHHHhcCCCCCCCC
Q 004836 678 EEPCCICQEEYT-DGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 722 (728)
Q Consensus 678 e~~C~ICLEefe-e~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR 722 (728)
...|-+|...-. +.+-.+.+.|+-.||..| |+.....||+|-
T Consensus 654 ~r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC~ 696 (717)
T KOG3726|consen 654 IRTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVCG 696 (717)
T ss_pred HHHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCcccC
Confidence 356899976644 222234557999999998 666688899994
No 146
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=31.17 E-value=26 Score=37.74 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=33.2
Q ss_pred CCcccccccccCCCCceEecCCCCccchHHHHHHHhcCC--CCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN--LCPICK 722 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~--sCPlCR 722 (728)
...|+|=...+..+ ++...|||+|-++-|...+.... .||+--
T Consensus 176 s~rdPis~~~I~nP--viSkkC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP--VISKKCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred cccCchhhhhhhch--hhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence 46799987777776 45568999999999999988643 488743
No 147
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=30.63 E-value=14 Score=39.71 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=22.0
Q ss_pred CCCCcccccccccCCCCceEec--CCCCccchHHHHHHHhcCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWLMQKNLCPICKTT 724 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~L--pCGH~FH~~CI~~WL~~k~sCPlCR~~ 724 (728)
.....|+||=..-........- --.|.+|.-|-..|-.....||.|-..
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 3446899997764432100000 024778899999998888899999653
No 148
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=30.19 E-value=27 Score=26.61 Aligned_cols=25 Identities=36% Similarity=0.759 Sum_probs=17.6
Q ss_pred cccccccccCCCCc--------eEecCCCCccc
Q 004836 680 PCCICQEEYTDGDN--------LGILDCGHDFH 704 (728)
Q Consensus 680 ~C~ICLEefee~d~--------Vv~LpCGH~FH 704 (728)
.|+=|.-.|..+++ +....|+|+|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 58888888886654 44556888874
No 149
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=29.48 E-value=59 Score=41.30 Aligned_cols=51 Identities=22% Similarity=0.468 Sum_probs=35.9
Q ss_pred CCCCCcccccccccCCC---Cc-eEecCCCCccchHHHHHHHh-cCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDG---DN-LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTG 725 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~---d~-Vv~LpCGH~FH~~CI~~WL~-~k~sCPlCR~~l 725 (728)
......|-||=+++... +. |.+-.|+--.|+.|..-=.+ .+..||-||+.-
T Consensus 12 ~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y 67 (1044)
T PLN02915 12 SADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRY 67 (1044)
T ss_pred CCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCch
Confidence 34667899999997643 32 44557999999999953222 456799999753
No 150
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=27.40 E-value=40 Score=31.76 Aligned_cols=46 Identities=22% Similarity=0.526 Sum_probs=29.5
Q ss_pred CCCcccccccccCC--CCceEecCCCCccchHHHHHHHhcCC--CCCCCCC
Q 004836 677 DEEPCCICQEEYTD--GDNLGILDCGHDFHTNCIKQWLMQKN--LCPICKT 723 (728)
Q Consensus 677 ee~~C~ICLEefee--~d~Vv~LpCGH~FH~~CI~~WL~~k~--sCPlCR~ 723 (728)
.+..|.+|...|.. +-......|.|.+|..|-.. ..... .|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 56689999988653 33466778999999999654 11112 3877753
No 151
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=26.30 E-value=22 Score=43.72 Aligned_cols=47 Identities=17% Similarity=0.428 Sum_probs=31.4
Q ss_pred CCCCcccccccccCCCCceEecCCCCccchHHHHHHHhc------CCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ------KNLCPICKT 723 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~------k~sCPlCR~ 723 (728)
.....|-.|.-....- ..++-.|+|.||..|++.|.-+ -..|+.|+.
T Consensus 227 g~~~mC~~C~~tlfn~-hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~ 279 (889)
T KOG1356|consen 227 GIREMCDRCETTLFNI-HWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWL 279 (889)
T ss_pred Ccchhhhhhcccccce-eEEccccCCeeeecchhhccccchHhHhhhhhhHHHH
Confidence 3446688897664432 2356689999999999999521 123777654
No 152
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=26.00 E-value=36 Score=40.97 Aligned_cols=46 Identities=28% Similarity=0.742 Sum_probs=28.8
Q ss_pred CCcccccccccCC--CCceEecCCCCccchHHHHHHHhcC-----CCCCCCCC
Q 004836 678 EEPCCICQEEYTD--GDNLGILDCGHDFHTNCIKQWLMQK-----NLCPICKT 723 (728)
Q Consensus 678 e~~C~ICLEefee--~d~Vv~LpCGH~FH~~CI~~WL~~k-----~sCPlCR~ 723 (728)
...|.||-..=.. +-.+.+-.|+-.||..|+..|+..- -.||-||.
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 3446666433222 2123344799999999999998732 24888875
No 153
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=25.98 E-value=30 Score=29.00 Aligned_cols=38 Identities=21% Similarity=0.466 Sum_probs=19.6
Q ss_pred CCCCcccccccccCCCCc-eEecCCCCccchHHHHHHHh
Q 004836 676 SDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLM 713 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~-Vv~LpCGH~FH~~CI~~WL~ 713 (728)
.+...|.+|...|..-.. -..-.||++||..|....+.
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIP 45 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEc
Confidence 456779999999965322 22336999999999886543
No 154
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=24.83 E-value=66 Score=29.02 Aligned_cols=49 Identities=20% Similarity=0.467 Sum_probs=21.0
Q ss_pred CCCcccccccccCCC---Cc-eEecCCCCccchHHHHHHHh-cCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDG---DN-LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTG 725 (728)
Q Consensus 677 ee~~C~ICLEefee~---d~-Vv~LpCGH~FH~~CI~~WL~-~k~sCPlCR~~l 725 (728)
....|-||=+++... +. +....|+--.|+.|..-=.+ ....||-||+..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~y 61 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRY 61 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B-
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCc
Confidence 467899999887642 22 23347998899999885444 456899999753
No 155
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=24.12 E-value=40 Score=37.43 Aligned_cols=30 Identities=27% Similarity=0.756 Sum_probs=19.2
Q ss_pred CceEecCCCCccchHHHHHHHhc------CCCCCCCCCC
Q 004836 692 DNLGILDCGHDFHTNCIKQWLMQ------KNLCPICKTT 724 (728)
Q Consensus 692 d~Vv~LpCGH~FH~~CI~~WL~~------k~sCPlCR~~ 724 (728)
+..+-|.|||+-.. ..|=.+ ...||+||..
T Consensus 315 QP~vYl~CGHV~G~---H~WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 315 QPWVYLNCGHVHGY---HNWGVRENTGQRERECPMCRVV 350 (429)
T ss_pred CCeEEEeccccccc---cccccccccCcccCcCCeeeee
Confidence 34578899987332 246543 3459999963
No 156
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=24.03 E-value=19 Score=43.40 Aligned_cols=47 Identities=26% Similarity=0.579 Sum_probs=30.4
Q ss_pred CCcccccccccCCCCc--eEec-----CCCCccchHHHHHH----------HhcCCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDN--LGIL-----DCGHDFHTNCIKQW----------LMQKNLCPICKTT 724 (728)
Q Consensus 678 e~~C~ICLEefee~d~--Vv~L-----pCGH~FH~~CI~~W----------L~~k~sCPlCR~~ 724 (728)
..+|-||.|+=.+.+. -.++ .|...||..|...- +..-+.|-+|+.-
T Consensus 117 nKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~H 180 (900)
T KOG0956|consen 117 NKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYH 180 (900)
T ss_pred cceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHH
Confidence 5679999998443321 1233 47788999998753 1122469999864
No 157
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=23.56 E-value=27 Score=39.80 Aligned_cols=49 Identities=24% Similarity=0.526 Sum_probs=0.0
Q ss_pred CCcccccccccC--------------CCC--ceEecCCCCccchHHHHHHHhc---------CCCCCCCCCCCC
Q 004836 678 EEPCCICQEEYT--------------DGD--NLGILDCGHDFHTNCIKQWLMQ---------KNLCPICKTTGL 726 (728)
Q Consensus 678 e~~C~ICLEefe--------------e~d--~Vv~LpCGH~FH~~CI~~WL~~---------k~sCPlCR~~ll 726 (728)
..+|+||+..-. +.. .-..-||||+-=.++.+-|-.. +..||.|-..|.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 677999986522 100 1123489999999999999652 236999987764
No 159
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=23.28 E-value=15 Score=40.05 Aligned_cols=38 Identities=32% Similarity=0.512 Sum_probs=30.2
Q ss_pred CCcccccccccCCCCceEecCCCCccchHHHHHHHhcC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK 715 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k 715 (728)
...|.||+++|..+.....+.|--+||..|+..|+...
T Consensus 214 ~rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 214 IRVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTG 251 (288)
T ss_pred ceecHHHHHHHhcccccchhhccccccccccccccccc
Confidence 34899999999875555566666699999999999854
No 160
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.55 E-value=62 Score=35.16 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=29.6
Q ss_pred CCCCCCccccccc-ccCCCCce-EecCCCCccchHHHHHHHh
Q 004836 674 IPSDEEPCCICQE-EYTDGDNL-GILDCGHDFHTNCIKQWLM 713 (728)
Q Consensus 674 ~~~ee~~C~ICLE-efee~d~V-v~LpCGH~FH~~CI~~WL~ 713 (728)
.....+.|++|+. ++....+. +...|+|.|+..|..-|..
T Consensus 91 ~~~~~~~ls~~~s~e~~~~~e~~~~y~~~~~f~i~~~~i~~~ 132 (271)
T COG5574 91 RFNREETLSIEYSRETNIDKEGEVLYPCGIFFCIGCDYIWSI 132 (271)
T ss_pred ccccccccccccCcccccccccceeeecccccchhhhHHHHH
Confidence 3456778999988 54443333 4448999999999999987
No 161
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=22.38 E-value=68 Score=40.91 Aligned_cols=37 Identities=19% Similarity=0.513 Sum_probs=26.7
Q ss_pred CCCCCCCcccccccccCCCC--ceEecCCCCccchHHHH
Q 004836 673 EIPSDEEPCCICQEEYTDGD--NLGILDCGHDFHTNCIK 709 (728)
Q Consensus 673 ~~~~ee~~C~ICLEefee~d--~Vv~LpCGH~FH~~CI~ 709 (728)
...+++..|+||++.-...- .|.+=.|+=.+|.+|..
T Consensus 214 ~~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg 252 (1051)
T KOG0955|consen 214 ALLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG 252 (1051)
T ss_pred cccCCCccceeecccccCCCceEEEcCCCcchhhhhccC
Confidence 34456778999999876632 23333699999999987
No 162
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=22.22 E-value=41 Score=40.95 Aligned_cols=48 Identities=31% Similarity=0.625 Sum_probs=33.7
Q ss_pred CCCCcccccccccCCCCc-------eEecCCCCcc--------------------chHHHHHHHh--------cCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDN-------LGILDCGHDF--------------------HTNCIKQWLM--------QKNLCPI 720 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~-------Vv~LpCGH~F--------------------H~~CI~~WL~--------~k~sCPl 720 (728)
-+.-+|.=|++++.++.. +.++.||-.| |..|-+.+-. +-..||.
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~ 178 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPK 178 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcc
Confidence 355679999999988764 3466787654 8888887643 1225999
Q ss_pred CCC
Q 004836 721 CKT 723 (728)
Q Consensus 721 CR~ 723 (728)
|.=
T Consensus 179 CGP 181 (750)
T COG0068 179 CGP 181 (750)
T ss_pred cCC
Confidence 963
No 163
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.04 E-value=44 Score=30.96 Aligned_cols=12 Identities=33% Similarity=1.071 Sum_probs=10.8
Q ss_pred cchHHHHHHHhc
Q 004836 703 FHTNCIKQWLMQ 714 (728)
Q Consensus 703 FH~~CI~~WL~~ 714 (728)
||+.|+.+|+..
T Consensus 43 FCRNCLs~Wy~e 54 (104)
T COG3492 43 FCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHH
Confidence 999999999973
No 164
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=21.74 E-value=55 Score=24.25 Aligned_cols=22 Identities=23% Similarity=0.605 Sum_probs=12.7
Q ss_pred cCCCCccchHHHHHHHhcCCCCCCCCCC
Q 004836 697 LDCGHDFHTNCIKQWLMQKNLCPICKTT 724 (728)
Q Consensus 697 LpCGH~FH~~CI~~WL~~k~sCPlCR~~ 724 (728)
..|||+|-... ....||+|...
T Consensus 5 ~~CGy~y~~~~------~~~~CP~Cg~~ 26 (33)
T cd00350 5 PVCGYIYDGEE------APWVCPVCGAP 26 (33)
T ss_pred CCCCCEECCCc------CCCcCcCCCCc
Confidence 34666554332 33479999764
No 165
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=21.34 E-value=47 Score=25.28 Aligned_cols=25 Identities=32% Similarity=0.723 Sum_probs=17.4
Q ss_pred cccccccccCCCCc--------eEecCCCCccc
Q 004836 680 PCCICQEEYTDGDN--------LGILDCGHDFH 704 (728)
Q Consensus 680 ~C~ICLEefee~d~--------Vv~LpCGH~FH 704 (728)
.|+-|.-.|..+++ ++.-.|+|+|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 58888888886553 44446888875
No 166
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=20.96 E-value=1e+02 Score=28.82 Aligned_cols=24 Identities=21% Similarity=0.592 Sum_probs=18.7
Q ss_pred CCccchHHHHHHHhcC---------CCCCCCCC
Q 004836 700 GHDFHTNCIKQWLMQK---------NLCPICKT 723 (728)
Q Consensus 700 GH~FH~~CI~~WL~~k---------~sCPlCR~ 723 (728)
.=.||..||..++... -.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 6679999999887632 24999986
No 167
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.93 E-value=58 Score=34.57 Aligned_cols=23 Identities=26% Similarity=0.660 Sum_probs=18.2
Q ss_pred ccchHHHHHHHhcCCCCCCCCCC
Q 004836 702 DFHTNCIKQWLMQKNLCPICKTT 724 (728)
Q Consensus 702 ~FH~~CI~~WL~~k~sCPlCR~~ 724 (728)
+-|..|-.+--+.-..||+||..
T Consensus 195 K~C~sC~qqIHRNAPiCPlCK~K 217 (230)
T PF10146_consen 195 KTCQSCHQQIHRNAPICPLCKAK 217 (230)
T ss_pred chhHhHHHHHhcCCCCCcccccc
Confidence 35788888776777899999975
No 168
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=20.87 E-value=41 Score=38.90 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=27.8
Q ss_pred cCCCCCCCcccccccccCCCCce-EecCCCCccchHHHHH
Q 004836 672 IEIPSDEEPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQ 710 (728)
Q Consensus 672 ~~~~~ee~~C~ICLEefee~d~V-v~LpCGH~FH~~CI~~ 710 (728)
+-.+.....|++|-..|...-.- -+--||-+.|.+|.+-
T Consensus 174 W~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~ 213 (505)
T KOG1842|consen 174 WLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKF 213 (505)
T ss_pred ccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHh
Confidence 34455677899999999864211 1224999999999874
No 169
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.73 E-value=20 Score=43.27 Aligned_cols=47 Identities=21% Similarity=0.432 Sum_probs=33.6
Q ss_pred CCCCCCCcccccccccCCCCceEecCCCCccchHHHHHH--HhcCCCCCCC
Q 004836 673 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQW--LMQKNLCPIC 721 (728)
Q Consensus 673 ~~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~W--L~~k~sCPlC 721 (728)
.....+++|.||+++-... ....+|.|.+|..|.+.- +..++.|+.|
T Consensus 73 ~~~~~e~~~~if~~d~~~y--~~~~~~~~~~C~~C~~~~~~~~~~~~~~~c 121 (669)
T KOG2231|consen 73 DFDEHEDTCVIFFADKLTY--TKLEACLHHSCHICDRRFRALYNKKECLHC 121 (669)
T ss_pred ccccccceeeeeeccccHH--HHHHHHHhhhcCccccchhhhcccCCCccc
Confidence 4556778899996653332 133479999999999976 3466789999
No 170
>PRK04023 DNA polymerase II large subunit; Validated
Probab=20.02 E-value=66 Score=40.75 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=32.2
Q ss_pred CCCCCcccccccccCCCCceEecCCC-----CccchHHHHHHHhcCCCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCG-----HDFHTNCIKQWLMQKNLCPICKTTGLP 727 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCG-----H~FH~~CI~~WL~~k~sCPlCR~~llp 727 (728)
......|+=|=...... .+-.|| ..||..|- +......||-|..++.+
T Consensus 623 EVg~RfCpsCG~~t~~f---rCP~CG~~Te~i~fCP~CG--~~~~~y~CPKCG~El~~ 675 (1121)
T PRK04023 623 EIGRRKCPSCGKETFYR---RCPFCGTHTEPVYRCPRCG--IEVEEDECEKCGREPTP 675 (1121)
T ss_pred cccCccCCCCCCcCCcc---cCCCCCCCCCcceeCcccc--CcCCCCcCCCCCCCCCc
Confidence 34556799887774332 455698 46999993 33344569999988764
Done!