Query 004836
Match_columns 728
No_of_seqs 304 out of 1792
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 07:21:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.5 2E-14 6.8E-19 125.7 6.1 78 648-727 12-89 (91)
2 2ep4_A Ring finger protein 24; 99.4 1.7E-13 5.9E-18 114.2 6.0 54 674-727 11-64 (74)
3 1x4j_A Ring finger protein 38; 99.4 1E-13 3.6E-18 116.2 4.4 53 675-727 20-72 (75)
4 2kiz_A E3 ubiquitin-protein li 99.4 2.6E-13 9E-18 111.7 6.6 55 673-727 9-63 (69)
5 1iym_A EL5; ring-H2 finger, ub 99.4 2E-13 6.7E-18 107.5 5.1 51 676-726 3-54 (55)
6 2ect_A Ring finger protein 126 99.4 2.6E-13 9E-18 114.2 5.3 53 674-726 11-63 (78)
7 1v87_A Deltex protein 2; ring- 99.3 1.5E-12 5.2E-17 117.1 7.2 50 677-726 24-93 (114)
8 2ecm_A Ring finger and CHY zin 99.3 1.8E-12 6.1E-17 101.8 5.2 51 676-726 3-54 (55)
9 2ea6_A Ring finger protein 4; 99.3 2E-12 6.9E-17 105.5 4.1 54 674-727 11-68 (69)
10 3ng2_A RNF4, snurf, ring finge 99.3 1.7E-12 5.9E-17 106.8 3.7 53 675-727 7-63 (71)
11 2ecl_A Ring-box protein 2; RNF 99.3 4E-12 1.4E-16 109.0 5.7 53 674-726 11-75 (81)
12 2d8t_A Dactylidin, ring finger 99.2 2.8E-12 9.5E-17 106.6 3.9 50 674-726 11-60 (71)
13 2djb_A Polycomb group ring fin 99.2 8.4E-12 2.9E-16 103.9 5.7 51 673-726 10-61 (72)
14 2xeu_A Ring finger protein 4; 99.2 5.1E-12 1.7E-16 101.6 3.2 50 677-726 2-55 (64)
15 3dpl_R Ring-box protein 1; ubi 99.2 1.1E-11 3.7E-16 112.5 5.5 52 674-725 33-99 (106)
16 2csy_A Zinc finger protein 183 99.2 1.1E-11 3.7E-16 105.4 5.2 50 674-726 11-60 (81)
17 2ct2_A Tripartite motif protei 99.2 2E-11 6.7E-16 104.3 6.3 54 673-726 10-67 (88)
18 1chc_A Equine herpes virus-1 r 99.2 1.2E-11 4.2E-16 101.2 4.6 49 676-726 3-51 (68)
19 2yur_A Retinoblastoma-binding 99.2 1.6E-11 5.5E-16 103.0 5.3 51 673-726 10-63 (74)
20 2ysl_A Tripartite motif-contai 99.2 2.4E-11 8.4E-16 100.6 5.9 50 674-726 16-68 (73)
21 4ayc_A E3 ubiquitin-protein li 99.2 7.4E-12 2.5E-16 117.1 2.9 46 678-726 53-98 (138)
22 2ecn_A Ring finger protein 141 99.2 6.9E-12 2.4E-16 103.4 1.9 50 674-727 11-60 (70)
23 2ecy_A TNF receptor-associated 99.1 3.1E-11 1.1E-15 98.7 5.0 50 675-727 12-62 (66)
24 1t1h_A Gspef-atpub14, armadill 99.1 3.6E-11 1.2E-15 101.2 5.1 49 675-726 5-54 (78)
25 2ecw_A Tripartite motif-contai 99.1 4.6E-11 1.6E-15 100.8 5.6 50 674-726 15-70 (85)
26 2d8s_A Cellular modulator of i 99.1 6E-11 2E-15 102.5 5.2 52 674-726 11-69 (80)
27 2ecv_A Tripartite motif-contai 99.1 6.3E-11 2.1E-15 100.0 5.2 50 674-726 15-70 (85)
28 2ysj_A Tripartite motif-contai 99.1 8.3E-11 2.8E-15 95.2 5.7 45 674-721 16-63 (63)
29 3lrq_A E3 ubiquitin-protein li 99.1 2.7E-11 9.2E-16 107.5 2.9 47 677-726 21-69 (100)
30 2egp_A Tripartite motif-contai 99.1 2.6E-11 8.9E-16 101.7 2.6 50 674-726 8-64 (79)
31 3ztg_A E3 ubiquitin-protein li 99.1 7.6E-11 2.6E-15 102.1 5.1 50 673-725 8-60 (92)
32 4a0k_B E3 ubiquitin-protein li 99.1 2.1E-11 7.3E-16 112.6 0.6 53 673-725 43-110 (117)
33 2y43_A E3 ubiquitin-protein li 99.0 1E-10 3.5E-15 103.0 4.4 47 677-726 21-68 (99)
34 2ecj_A Tripartite motif-contai 99.0 1.4E-10 4.9E-15 91.7 4.8 45 674-721 11-58 (58)
35 2ckl_A Polycomb group ring fin 99.0 1E-10 3.4E-15 104.7 4.3 48 676-726 13-61 (108)
36 3fl2_A E3 ubiquitin-protein li 99.0 7.4E-11 2.5E-15 108.0 3.5 46 678-726 52-98 (124)
37 4ap4_A E3 ubiquitin ligase RNF 99.0 1E-10 3.4E-15 106.2 3.7 51 676-726 5-59 (133)
38 1g25_A CDK-activating kinase a 99.0 3.3E-10 1.1E-14 92.3 4.6 50 677-726 2-54 (65)
39 2kr4_A Ubiquitin conjugation f 99.0 4E-10 1.4E-14 97.7 5.2 49 675-726 11-59 (85)
40 1jm7_A BRCA1, breast cancer ty 99.0 3.2E-10 1.1E-14 101.1 4.3 46 678-726 21-69 (112)
41 3l11_A E3 ubiquitin-protein li 99.0 9E-11 3.1E-15 105.9 0.7 48 675-725 12-60 (115)
42 2ckl_B Ubiquitin ligase protei 99.0 2.9E-10 1E-14 108.9 4.1 48 677-726 53-101 (165)
43 1z6u_A NP95-like ring finger p 98.9 4.2E-10 1.4E-14 107.3 4.7 46 678-726 78-124 (150)
44 2kre_A Ubiquitin conjugation f 98.9 5.4E-10 1.9E-14 100.0 4.6 49 675-726 26-74 (100)
45 3hct_A TNF receptor-associated 98.9 4.7E-10 1.6E-14 102.1 4.0 50 674-726 14-64 (118)
46 1wgm_A Ubiquitin conjugation f 98.9 7.9E-10 2.7E-14 98.6 5.4 49 675-726 19-68 (98)
47 2c2l_A CHIP, carboxy terminus 98.9 1.6E-09 5.5E-14 109.8 6.5 50 674-726 204-254 (281)
48 4ap4_A E3 ubiquitin ligase RNF 98.9 8E-10 2.7E-14 100.3 3.7 52 675-726 69-124 (133)
49 2ct0_A Non-SMC element 1 homol 98.9 1.3E-09 4.6E-14 93.1 4.4 50 674-725 11-62 (74)
50 1bor_A Transcription factor PM 98.9 5.2E-10 1.8E-14 89.5 1.5 45 676-726 4-48 (56)
51 1rmd_A RAG1; V(D)J recombinati 98.8 1.3E-09 4.4E-14 98.5 3.9 46 678-726 23-69 (116)
52 2y1n_A E3 ubiquitin-protein li 98.8 2.4E-09 8.3E-14 116.6 4.4 47 677-726 331-378 (389)
53 2vje_A E3 ubiquitin-protein li 98.8 2E-09 6.8E-14 88.6 2.8 47 677-726 7-56 (64)
54 3knv_A TNF receptor-associated 98.8 9.9E-10 3.4E-14 103.8 1.1 49 674-725 27-76 (141)
55 1jm7_B BARD1, BRCA1-associated 98.8 1.3E-09 4.4E-14 99.1 1.5 44 678-726 22-66 (117)
56 1e4u_A Transcriptional repress 98.8 5.4E-09 1.8E-13 89.7 5.0 51 675-726 8-61 (78)
57 2vje_B MDM4 protein; proto-onc 98.7 3.5E-09 1.2E-13 86.8 2.4 47 677-726 6-55 (63)
58 2yu4_A E3 SUMO-protein ligase 98.7 4.4E-09 1.5E-13 92.6 2.8 46 676-724 5-59 (94)
59 4ic3_A E3 ubiquitin-protein li 98.7 3E-09 1E-13 89.6 1.3 42 678-726 24-66 (74)
60 2f42_A STIP1 homology and U-bo 98.7 1E-08 3.6E-13 101.0 4.6 49 675-726 103-152 (179)
61 3hcs_A TNF receptor-associated 98.6 1.3E-08 4.5E-13 97.7 3.4 50 674-726 14-64 (170)
62 2ecg_A Baculoviral IAP repeat- 98.5 4.4E-08 1.5E-12 82.5 3.4 42 679-727 26-68 (75)
63 2ea5_A Cell growth regulator w 98.5 1.1E-07 3.8E-12 79.3 5.4 47 674-727 11-58 (68)
64 3k1l_B Fancl; UBC, ring, RWD, 98.5 3.1E-08 1E-12 106.2 2.1 52 675-726 305-372 (381)
65 1wim_A KIAA0161 protein; ring 98.4 8.5E-08 2.9E-12 83.8 3.0 48 677-724 4-61 (94)
66 2bay_A PRE-mRNA splicing facto 98.4 1E-07 3.5E-12 78.2 2.6 46 678-726 3-49 (61)
67 2yho_A E3 ubiquitin-protein li 98.4 5.5E-08 1.9E-12 83.3 0.9 42 678-726 18-60 (79)
68 3htk_C E3 SUMO-protein ligase 98.4 1.2E-07 4.1E-12 98.4 3.3 48 676-726 179-231 (267)
69 3t6p_A Baculoviral IAP repeat- 98.3 1.5E-07 5E-12 101.3 1.6 43 677-726 294-337 (345)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.3 4.5E-07 1.5E-11 74.3 3.8 48 676-726 4-58 (60)
71 3vk6_A E3 ubiquitin-protein li 97.6 3.2E-05 1.1E-09 69.6 3.9 45 680-726 3-48 (101)
72 3nw0_A Non-structural maintena 97.4 0.00012 4.2E-09 74.9 4.8 47 677-725 179-227 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 94.1 0.027 9.2E-07 49.2 3.1 36 677-712 2-38 (101)
74 2ko5_A Ring finger protein Z; 94.0 0.018 6.3E-07 51.3 1.9 46 676-726 26-72 (99)
75 3m62_A Ubiquitin conjugation f 93.4 0.072 2.5E-06 64.0 6.0 49 675-726 888-937 (968)
76 2lri_C Autoimmune regulator; Z 92.5 0.12 4.1E-06 43.0 4.4 50 675-727 9-62 (66)
77 3i2d_A E3 SUMO-protein ligase 88.7 0.29 9.8E-06 53.2 4.2 46 679-726 250-299 (371)
78 1we9_A PHD finger family prote 85.3 0.19 6.5E-06 40.8 0.4 49 676-724 4-58 (64)
79 1wil_A KIAA1045 protein; ring 84.6 0.97 3.3E-05 39.7 4.5 38 673-711 10-47 (89)
80 4fo9_A E3 SUMO-protein ligase 84.2 0.7 2.4E-05 50.0 4.2 46 679-726 216-265 (360)
81 1f62_A Transcription factor WS 83.5 0.66 2.2E-05 36.0 2.7 44 680-723 2-49 (51)
82 2l5u_A Chromodomain-helicase-D 83.5 0.65 2.2E-05 37.7 2.8 47 675-724 8-58 (61)
83 1mm2_A MI2-beta; PHD, zinc fin 82.8 0.39 1.3E-05 39.0 1.2 49 675-726 6-58 (61)
84 2ysm_A Myeloid/lymphoid or mix 79.4 0.75 2.6E-05 41.1 2.0 39 675-713 4-42 (111)
85 2k16_A Transcription initiatio 78.6 0.66 2.2E-05 38.8 1.2 51 675-725 15-69 (75)
86 1wep_A PHF8; structural genomi 78.5 2.1 7.3E-05 36.2 4.4 48 677-725 11-64 (79)
87 2lv9_A Histone-lysine N-methyl 76.6 1.3 4.4E-05 39.2 2.6 47 677-724 27-76 (98)
88 2kgg_A Histone demethylase jar 75.0 2 7E-05 33.6 3.1 43 680-722 4-52 (52)
89 2yql_A PHD finger protein 21A; 74.0 0.41 1.4E-05 38.1 -1.2 46 675-723 6-55 (56)
90 1fp0_A KAP-1 corepressor; PHD 71.7 1.8 6.3E-05 38.0 2.3 49 673-724 20-72 (88)
91 1wem_A Death associated transc 71.1 1.3 4.4E-05 37.1 1.2 47 680-726 17-72 (76)
92 1wee_A PHD finger family prote 69.6 0.56 1.9E-05 39.1 -1.4 51 676-727 14-69 (72)
93 2e6r_A Jumonji/ARID domain-con 68.4 0.73 2.5E-05 40.5 -1.0 50 674-723 12-65 (92)
94 3v43_A Histone acetyltransfera 66.4 8 0.00027 34.7 5.4 33 677-709 4-42 (112)
95 1xwh_A Autoimmune regulator; P 65.6 1.1 3.9E-05 36.7 -0.3 45 676-723 6-54 (66)
96 2puy_A PHD finger protein 21A; 65.4 1.2 4.3E-05 35.7 -0.1 45 676-723 3-51 (60)
97 2cs3_A Protein C14ORF4, MY039 62.9 14 0.00046 32.3 5.8 39 676-714 13-52 (93)
98 2lbm_A Transcriptional regulat 62.7 9.2 0.00032 36.3 5.3 47 675-724 60-117 (142)
99 2e6s_A E3 ubiquitin-protein li 61.3 2.2 7.6E-05 36.3 0.7 46 678-723 26-76 (77)
100 1weu_A Inhibitor of growth fam 60.7 5.8 0.0002 35.0 3.3 45 678-725 35-86 (91)
101 1zbd_B Rabphilin-3A; G protein 60.7 3.4 0.00012 38.8 1.9 34 676-709 53-88 (134)
102 2ku3_A Bromodomain-containing 60.6 2.3 7.9E-05 35.7 0.7 49 675-723 13-65 (71)
103 3o70_A PHD finger protein 13; 60.0 1.8 6.3E-05 35.9 -0.0 48 675-723 16-66 (68)
104 2vpb_A Hpygo1, pygopus homolog 59.7 6.6 0.00023 32.3 3.3 48 676-723 6-65 (65)
105 3v43_A Histone acetyltransfera 59.1 3.3 0.00011 37.2 1.5 46 678-723 61-111 (112)
106 2l43_A N-teminal domain from h 58.1 2.5 8.5E-05 36.8 0.5 50 675-724 22-75 (88)
107 3asl_A E3 ubiquitin-protein li 57.0 2.3 7.9E-05 35.5 0.1 45 680-724 20-69 (70)
108 1wen_A Inhibitor of growth fam 56.2 8 0.00027 32.4 3.2 43 678-725 16-66 (71)
109 3ask_A E3 ubiquitin-protein li 54.7 4.5 0.00015 41.2 1.8 47 678-724 174-225 (226)
110 3shb_A E3 ubiquitin-protein li 54.0 2.6 8.9E-05 36.0 -0.1 44 680-723 28-76 (77)
111 2d8v_A Zinc finger FYVE domain 53.4 8.5 0.00029 32.3 2.9 32 676-711 6-38 (67)
112 1wev_A Riken cDNA 1110020M19; 51.9 1.8 6.2E-05 37.6 -1.4 47 677-723 15-71 (88)
113 2yt5_A Metal-response element- 50.4 6.9 0.00024 31.6 1.9 50 675-724 3-61 (66)
114 1z60_A TFIIH basal transcripti 50.1 7.5 0.00026 31.8 2.1 44 679-722 16-59 (59)
115 1weo_A Cellulose synthase, cat 50.0 19 0.00066 31.9 4.7 49 677-725 15-68 (93)
116 2xb1_A Pygopus homolog 2, B-ce 48.3 10 0.00034 34.0 2.8 48 678-725 3-62 (105)
117 1wew_A DNA-binding family prot 47.3 6.2 0.00021 33.3 1.2 48 677-725 15-73 (78)
118 3ql9_A Transcriptional regulat 45.7 21 0.00071 33.4 4.6 47 675-724 54-111 (129)
119 4gne_A Histone-lysine N-methyl 45.5 13 0.00043 33.7 3.0 42 675-722 12-60 (107)
120 2ysm_A Myeloid/lymphoid or mix 42.7 3.7 0.00013 36.5 -0.9 45 680-724 56-104 (111)
121 2kwj_A Zinc finger protein DPF 42.3 14 0.00047 33.3 2.7 33 679-711 2-41 (114)
122 1z2q_A LM5-1; membrane protein 41.3 22 0.00076 30.3 3.8 39 673-711 16-55 (84)
123 1y02_A CARP2, FYVE-ring finger 41.2 3.5 0.00012 38.1 -1.4 46 676-721 17-63 (120)
124 1x4u_A Zinc finger, FYVE domai 38.0 22 0.00075 30.2 3.2 38 674-711 10-48 (84)
125 2pv0_B DNA (cytosine-5)-methyl 37.7 22 0.00074 38.9 3.9 47 675-724 90-148 (386)
126 3mpx_A FYVE, rhogef and PH dom 37.4 7 0.00024 41.9 0.0 50 676-725 373-430 (434)
127 2vnf_A ING 4, P29ING4, inhibit 36.6 5.4 0.00019 32.2 -0.8 41 679-723 10-58 (60)
128 2gmg_A Hypothetical protein PF 36.4 7.9 0.00027 35.1 0.2 25 695-724 69-93 (105)
129 2co8_A NEDD9 interacting prote 36.3 35 0.0012 28.3 4.2 40 676-725 13-52 (82)
130 2yw8_A RUN and FYVE domain-con 36.2 22 0.00075 30.2 2.9 38 674-711 15-53 (82)
131 1joc_A EEA1, early endosomal a 35.5 19 0.00065 33.1 2.6 36 676-711 67-103 (125)
132 3t7l_A Zinc finger FYVE domain 35.5 20 0.00068 31.0 2.6 37 676-712 18-55 (90)
133 2zet_C Melanophilin; complex, 35.0 17 0.00058 34.8 2.2 46 677-723 67-116 (153)
134 1wfk_A Zinc finger, FYVE domai 34.8 26 0.00089 30.3 3.2 36 676-711 7-43 (88)
135 2cu8_A Cysteine-rich protein 2 33.5 29 0.001 28.1 3.2 39 678-726 9-47 (76)
136 1dvp_A HRS, hepatocyte growth 32.9 20 0.00067 35.6 2.4 34 678-711 161-195 (220)
137 1wd2_A Ariadne-1 protein homol 32.7 9.6 0.00033 30.9 0.1 39 677-715 5-48 (60)
138 2o35_A Hypothetical protein DU 32.3 15 0.00053 33.0 1.3 11 703-713 43-53 (105)
139 3zyq_A Hepatocyte growth facto 32.1 21 0.00071 35.8 2.5 35 677-711 163-198 (226)
140 3fyb_A Protein of unknown func 31.8 16 0.00055 32.9 1.3 11 703-713 42-52 (104)
141 3kqi_A GRC5, PHD finger protei 31.5 13 0.00044 31.0 0.7 48 677-724 8-61 (75)
142 1vfy_A Phosphatidylinositol-3- 31.2 30 0.001 28.6 2.9 33 679-711 12-45 (73)
143 2dj7_A Actin-binding LIM prote 30.6 38 0.0013 28.0 3.5 39 677-725 14-52 (80)
144 1iml_A CRIP, cysteine rich int 30.2 25 0.00085 28.5 2.2 46 677-726 26-72 (76)
145 3kv5_D JMJC domain-containing 29.9 11 0.00037 42.3 -0.1 47 677-723 35-87 (488)
146 2kwj_A Zinc finger protein DPF 29.2 8.5 0.00029 34.6 -0.9 45 679-723 59-107 (114)
147 3c6w_A P28ING5, inhibitor of g 28.6 9.3 0.00032 30.8 -0.7 40 680-723 10-57 (59)
148 2rsd_A E3 SUMO-protein ligase 27.5 6.8 0.00023 32.2 -1.7 42 681-723 12-64 (68)
149 3o7a_A PHD finger protein 13 v 26.5 12 0.00041 29.1 -0.3 43 681-723 6-51 (52)
150 2dar_A PDZ and LIM domain prot 26.4 41 0.0014 28.2 3.0 38 677-725 24-61 (90)
151 1x62_A C-terminal LIM domain p 25.9 41 0.0014 27.5 2.8 38 677-725 14-51 (79)
152 1m3v_A FLIN4, fusion of the LI 25.9 48 0.0016 29.5 3.5 49 679-727 33-81 (122)
153 3a1b_A DNA (cytosine-5)-methyl 25.6 43 0.0015 32.4 3.2 45 675-723 76-133 (159)
154 2g6q_A Inhibitor of growth pro 24.9 12 0.00042 30.4 -0.6 42 679-724 11-60 (62)
155 2cor_A Pinch protein; LIM doma 23.9 61 0.0021 26.6 3.5 38 677-725 14-51 (79)
156 1x64_A Alpha-actinin-2 associa 23.8 56 0.0019 27.3 3.3 40 676-726 23-62 (89)
157 3pwf_A Rubrerythrin; non heme 22.8 41 0.0014 32.4 2.6 25 693-724 138-162 (170)
158 1x63_A Skeletal muscle LIM-pro 22.6 75 0.0026 25.8 3.8 40 678-726 15-54 (82)
159 2l3k_A Rhombotin-2, linker, LI 22.3 43 0.0015 29.9 2.4 36 677-713 35-70 (123)
160 2jne_A Hypothetical protein YF 22.1 9.9 0.00034 34.1 -1.8 39 679-725 33-71 (101)
161 2xjy_A Rhombotin-2; oncoprotei 21.9 51 0.0018 29.3 2.9 50 677-726 28-77 (131)
162 1x61_A Thyroid receptor intera 21.2 66 0.0023 25.5 3.1 35 678-714 33-67 (72)
163 2lcq_A Putative toxin VAPC6; P 20.3 31 0.0011 32.5 1.1 25 695-725 134-158 (165)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.49 E-value=2e-14 Score=125.68 Aligned_cols=78 Identities=28% Similarity=0.542 Sum_probs=61.5
Q ss_pred CCCCCCCHHHHHHHhhhccCCCcccCCCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004836 648 DVSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 727 (728)
Q Consensus 648 ~vstGlSeE~I~kllkq~ky~~~e~~~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~llp 727 (728)
....+++++.|.++...... . ......++..|+||+++|..++.++.|+|||.||..||.+||..+..||+||+.+.+
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~-~-~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVT-E-DHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECC-T-TCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCHHHHHhCCCeeec-c-cccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 34567788887765543322 2 223345677899999999998888999999999999999999999999999998864
No 2
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.7e-13 Score=114.24 Aligned_cols=54 Identities=35% Similarity=0.888 Sum_probs=48.7
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 727 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~llp 727 (728)
...++..|+||++.|..++.++.|+|+|.||..||.+|++.+..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 345677899999999999888899999999999999999999999999998864
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=1e-13 Score=116.22 Aligned_cols=53 Identities=32% Similarity=0.943 Sum_probs=48.6
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 727 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~llp 727 (728)
..+...|+||+++|..++.++.++|+|.||..||.+||+.+..||+||+.+.+
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 44667899999999999889999999999999999999999999999998865
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=2.6e-13 Score=111.69 Aligned_cols=55 Identities=35% Similarity=0.794 Sum_probs=48.8
Q ss_pred CCCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004836 673 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 727 (728)
Q Consensus 673 ~~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~llp 727 (728)
+.......|+||++.|..++.++.++|||.||..||.+|+..+..||+||+.+..
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 3445667899999999988888999999999999999999999999999998753
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.39 E-value=2e-13 Score=107.53 Aligned_cols=51 Identities=37% Similarity=0.987 Sum_probs=46.4
Q ss_pred CCCCcccccccccCCCCceEecC-CCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~Lp-CGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
.++..|+||+++|..++.+..++ |||.||..||.+|++.+..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45678999999999988888887 9999999999999999999999999874
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.38 E-value=2.6e-13 Score=114.25 Aligned_cols=53 Identities=34% Similarity=0.841 Sum_probs=48.1
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
...+...|+||++.|..++.++.|+|+|.||..||.+|+..+..||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 34567789999999999888889999999999999999999999999999875
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.33 E-value=1.5e-12 Score=117.09 Aligned_cols=50 Identities=32% Similarity=0.553 Sum_probs=41.1
Q ss_pred CCCcccccccccCCCC---------------ceEecCCCCccchHHHHHHH-----hcCCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGD---------------NLGILDCGHDFHTNCIKQWL-----MQKNLCPICKTTGL 726 (728)
Q Consensus 677 ee~~C~ICLEefee~d---------------~Vv~LpCGH~FH~~CI~~WL-----~~k~sCPlCR~~ll 726 (728)
.++.|+||+++|.++. .++.++|+|.||..||.+|| ..+.+||+||+.+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 3568999999997653 34477999999999999999 45678999998763
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.30 E-value=1.8e-12 Score=101.83 Aligned_cols=51 Identities=29% Similarity=0.649 Sum_probs=44.2
Q ss_pred CCCCcccccccccCCC-CceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDG-DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 676 ~ee~~C~ICLEefee~-d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
.++..|+||++.|.+. +.++.++|||.||..||.+|+..+..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 3567899999999764 35678899999999999999999999999999874
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2e-12 Score=105.46 Aligned_cols=54 Identities=30% Similarity=0.663 Sum_probs=46.1
Q ss_pred CCCCCCcccccccccCCC----CceEecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 727 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~----d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~llp 727 (728)
...+...|+||++.|.+. +.++.++|||.||..||.+|+..+..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 345678899999999864 345788999999999999999999999999998753
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.27 E-value=1.7e-12 Score=106.80 Aligned_cols=53 Identities=30% Similarity=0.691 Sum_probs=45.8
Q ss_pred CCCCCcccccccccCCC----CceEecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 727 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~----d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~llp 727 (728)
..++..|+||++.|.++ +.++.++|||.||..||.+|+..+..||+||+.+..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 34677899999998764 556788999999999999999999999999998753
No 11
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4e-12 Score=109.04 Aligned_cols=53 Identities=30% Similarity=0.827 Sum_probs=43.1
Q ss_pred CCCCCCcccccccccCC-----------CCceEec-CCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTD-----------GDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee-----------~d~Vv~L-pCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
.+.+++.|+||+++|.+ ++.++.+ +|+|.||..||.+||..+.+||+||+++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 11 WDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred ecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 34567779999888864 3445555 59999999999999999999999999864
No 12
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.8e-12 Score=106.59 Aligned_cols=50 Identities=22% Similarity=0.395 Sum_probs=44.3
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
...++..|+||++.+.+. +.++|||.||..||.+|+..+..||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred cCCCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 345667899999999776 78899999999999999999999999999874
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=8.4e-12 Score=103.94 Aligned_cols=51 Identities=25% Similarity=0.533 Sum_probs=44.4
Q ss_pred CCCCCCCcccccccccCCCCceEec-CCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 673 EIPSDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 673 ~~~~ee~~C~ICLEefee~d~Vv~L-pCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
+...+...|+||++.+.++ +.+ +|||.||..||.+|+..+..||+||+.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred hhcCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 3445678899999999886 565 99999999999999999999999999875
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.20 E-value=5.1e-12 Score=101.60 Aligned_cols=50 Identities=28% Similarity=0.659 Sum_probs=43.8
Q ss_pred CCCcccccccccCCC----CceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 677 ee~~C~ICLEefee~----d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
++..|+||++.+.++ +.++.++|||.||..||.+|+..+..||+||+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 457899999999864 45578899999999999999999999999999875
No 15
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.20 E-value=1.1e-11 Score=112.48 Aligned_cols=52 Identities=27% Similarity=0.618 Sum_probs=44.5
Q ss_pred CCCCCCcccccccccCCCC---------------ceEecCCCCccchHHHHHHHhcCCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGD---------------NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 725 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d---------------~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~l 725 (728)
.+.+++.|+||++.|.+.. .++.++|+|.||..||.+||..+.+||+||+..
T Consensus 33 ~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 33 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp ESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred cCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 3456788999999998652 366789999999999999999999999999974
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=105.37 Aligned_cols=50 Identities=20% Similarity=0.453 Sum_probs=44.1
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
...+...|+||++.|.++ +.++|||.||..||.+|+.....||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 345567899999999876 67899999999999999999999999999863
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2e-11 Score=104.29 Aligned_cols=54 Identities=26% Similarity=0.633 Sum_probs=45.7
Q ss_pred CCCCCCCcccccccccCCCCc-eEecCCCCccchHHHHHHHhcC---CCCCCCCCCCC
Q 004836 673 EIPSDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLMQK---NLCPICKTTGL 726 (728)
Q Consensus 673 ~~~~ee~~C~ICLEefee~d~-Vv~LpCGH~FH~~CI~~WL~~k---~sCPlCR~~ll 726 (728)
+...+...|+||++.|.+.+. .+.++|||.||..||.+|+..+ ..||+||+.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 345567889999999998554 5788999999999999999976 78999999764
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.18 E-value=1.2e-11 Score=101.21 Aligned_cols=49 Identities=35% Similarity=0.695 Sum_probs=42.9
Q ss_pred CCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
.....|+||++.+.++ ++.++|||.||..||.+|+..+..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 3467899999998764 478899999999999999999999999998864
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.18 E-value=1.6e-11 Score=103.02 Aligned_cols=51 Identities=29% Similarity=0.772 Sum_probs=44.0
Q ss_pred CCCCCCCcccccccccCCCCceEecC-CCCccchHHHHHHHhcC--CCCCCCCCCCC
Q 004836 673 EIPSDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQK--NLCPICKTTGL 726 (728)
Q Consensus 673 ~~~~ee~~C~ICLEefee~d~Vv~Lp-CGH~FH~~CI~~WL~~k--~sCPlCR~~ll 726 (728)
+...++..|+||++.|.++ +.++ |||.||..||..|+..+ ..||+||+.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred ccCCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3445678899999999988 7898 99999999999999865 68999999754
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2.4e-11 Score=100.58 Aligned_cols=50 Identities=34% Similarity=0.598 Sum_probs=43.1
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHh---cCCCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPICKTTGL 726 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~---~k~sCPlCR~~ll 726 (728)
...+...|+||++.|.++ +.++|||.||..||.+|+. .+..||+||+.+.
T Consensus 16 ~~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred hCccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 345678899999999876 7789999999999999997 4568999999875
No 21
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.16 E-value=7.4e-12 Score=117.09 Aligned_cols=46 Identities=37% Similarity=0.908 Sum_probs=42.0
Q ss_pred CCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
+..|+||++.|.++ +.++|||.||..||..|+..+..||+||+.+.
T Consensus 53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45699999999877 78899999999999999999999999999874
No 22
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=6.9e-12 Score=103.43 Aligned_cols=50 Identities=40% Similarity=0.900 Sum_probs=43.7
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 727 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~llp 727 (728)
...+...|+||++.+.+ +.++|||.||..||.+|+..+..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred cCCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 34567789999999876 678999999999999999999999999988753
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=3.1e-11 Score=98.70 Aligned_cols=50 Identities=22% Similarity=0.514 Sum_probs=43.1
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHh-cCCCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGLP 727 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~-~k~sCPlCR~~llp 727 (728)
..+...|+||++.+.++ +.++|||.||..||.+|+. ....||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 45678899999999887 6689999999999999995 56789999998753
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.13 E-value=3.6e-11 Score=101.15 Aligned_cols=49 Identities=27% Similarity=0.449 Sum_probs=43.6
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhc-CCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 726 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~-k~sCPlCR~~ll 726 (728)
..++..|+||++.|.++ +.++|||.||..||.+|+.. +..||+||+.+.
T Consensus 5 ~~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CSSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CcccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 34578899999999887 77899999999999999997 788999999874
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.12 E-value=4.6e-11 Score=100.78 Aligned_cols=50 Identities=30% Similarity=0.602 Sum_probs=43.8
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhc------CCCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ------KNLCPICKTTGL 726 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~------k~sCPlCR~~ll 726 (728)
...++..|+||++.|.++ +.++|||.||..||..|+.. ...||+||+.+.
T Consensus 15 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred hCccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 345677899999999887 68899999999999999997 668999999874
No 26
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=6e-11 Score=102.51 Aligned_cols=52 Identities=35% Similarity=0.758 Sum_probs=43.9
Q ss_pred CCCCCCcccccccccCCCCceEecCCC-----CccchHHHHHHHhcC--CCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCG-----HDFHTNCIKQWLMQK--NLCPICKTTGL 726 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCG-----H~FH~~CI~~WL~~k--~sCPlCR~~ll 726 (728)
...++..|.||+++|.+++.+ ++||. |.||..||++||..+ .+||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 345667899999999877766 58996 999999999999965 48999999874
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=6.3e-11 Score=99.96 Aligned_cols=50 Identities=32% Similarity=0.653 Sum_probs=43.7
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhc------CCCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ------KNLCPICKTTGL 726 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~------k~sCPlCR~~ll 726 (728)
...+...|+||++.|.++ +.++|||.||..||..|+.. ...||+||+.+.
T Consensus 15 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred HccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 345678899999999887 67899999999999999987 778999999875
No 28
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=8.3e-11 Score=95.18 Aligned_cols=45 Identities=33% Similarity=0.651 Sum_probs=39.5
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHh---cCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPIC 721 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~---~k~sCPlC 721 (728)
...++..|+||++.|.++ +.++|||.||..||.+|++ .+..||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 445678899999999987 7889999999999999998 45689998
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.09 E-value=2.7e-11 Score=107.52 Aligned_cols=47 Identities=28% Similarity=0.712 Sum_probs=41.6
Q ss_pred CCCcccccccccCCCCceEe-cCCCCccchHHHHHHHhcC-CCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGI-LDCGHDFHTNCIKQWLMQK-NLCPICKTTGL 726 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~-LpCGH~FH~~CI~~WL~~k-~sCPlCR~~ll 726 (728)
++..|+||++.|.++ +. ++|||.||..||.+|+..+ ..||+||+.+.
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 356799999999876 66 8999999999999999987 69999999864
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.09 E-value=2.6e-11 Score=101.70 Aligned_cols=50 Identities=34% Similarity=0.611 Sum_probs=43.5
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhc-------CCCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-------KNLCPICKTTGL 726 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~-------k~sCPlCR~~ll 726 (728)
...++..|+||++.|.++ +.++|||.||..||.+|+.. ...||+||+.+.
T Consensus 8 ~~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred hcccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 345678899999999887 67899999999999999987 568999999874
No 31
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.08 E-value=7.6e-11 Score=102.11 Aligned_cols=50 Identities=30% Similarity=0.775 Sum_probs=43.5
Q ss_pred CCCCCCCcccccccccCCCCceEecC-CCCccchHHHHHHHhcC--CCCCCCCCCC
Q 004836 673 EIPSDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQK--NLCPICKTTG 725 (728)
Q Consensus 673 ~~~~ee~~C~ICLEefee~d~Vv~Lp-CGH~FH~~CI~~WL~~k--~sCPlCR~~l 725 (728)
+...++..|+||++.|.++ +.++ |||.||..||..|+... ..||+||+.+
T Consensus 8 ~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred ccCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3455678899999999988 7889 99999999999999744 5899999986
No 32
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.05 E-value=2.1e-11 Score=112.61 Aligned_cols=53 Identities=26% Similarity=0.607 Sum_probs=3.3
Q ss_pred CCCCCCCcccccccccCCCC---------------ceEecCCCCccchHHHHHHHhcCCCCCCCCCCC
Q 004836 673 EIPSDEEPCCICQEEYTDGD---------------NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 725 (728)
Q Consensus 673 ~~~~ee~~C~ICLEefee~d---------------~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~l 725 (728)
..+.+++.|+||+++|.+.. .++.++|+|.||..||.+||..+.+||+||++.
T Consensus 43 ~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 43 AWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp EECCCC--------------------------------------------------------------
T ss_pred eecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 34556788999999997632 233458999999999999999999999999874
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.04 E-value=1e-10 Score=102.95 Aligned_cols=47 Identities=34% Similarity=0.722 Sum_probs=41.7
Q ss_pred CCCcccccccccCCCCceEec-CCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~L-pCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
+...|+||++.|.++ +.+ +|||.||..||..|+..+..||+||+.+.
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 356799999999876 566 89999999999999999999999999764
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.4e-10 Score=91.68 Aligned_cols=45 Identities=33% Similarity=0.887 Sum_probs=38.7
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHh---cCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPIC 721 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~---~k~sCPlC 721 (728)
...+...|+||++.+.++ +.++|||.||..||.+|+. .+..||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345677899999999987 6789999999999999954 56789998
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.04 E-value=1e-10 Score=104.67 Aligned_cols=48 Identities=27% Similarity=0.710 Sum_probs=42.5
Q ss_pred CCCCcccccccccCCCCceEec-CCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~L-pCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
.++..|+||++.|.++ +.+ +|||.||..||..|+..+..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp GGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 3567899999999876 565 99999999999999999999999999875
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.04 E-value=7.4e-11 Score=108.01 Aligned_cols=46 Identities=22% Similarity=0.418 Sum_probs=40.9
Q ss_pred CCcccccccccCCCCceEecCCCCccchHHHHHHHhcCC-CCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTGL 726 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~-sCPlCR~~ll 726 (728)
+..|+||++.|.++ +.++|||.||..||..|+..+. .||+||+.+.
T Consensus 52 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 46799999999987 7889999999999999998554 8999999874
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.02 E-value=1e-10 Score=106.24 Aligned_cols=51 Identities=29% Similarity=0.675 Sum_probs=44.9
Q ss_pred CCCCcccccccccCCC----CceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 676 ~ee~~C~ICLEefee~----d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
.++..|+||++.|.++ +.++.++|||.||..||.+||+.+..||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 3567899999999864 45678899999999999999999999999999875
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=3.3e-10 Score=92.31 Aligned_cols=50 Identities=24% Similarity=0.584 Sum_probs=41.0
Q ss_pred CCCccccccc-ccCCCCce-EecCCCCccchHHHHHHHhcC-CCCCCCCCCCC
Q 004836 677 DEEPCCICQE-EYTDGDNL-GILDCGHDFHTNCIKQWLMQK-NLCPICKTTGL 726 (728)
Q Consensus 677 ee~~C~ICLE-efee~d~V-v~LpCGH~FH~~CI~~WL~~k-~sCPlCR~~ll 726 (728)
++..|+||++ .+.++... +.++|||.||..||.+|+... ..||+||+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 4567999999 78776543 467999999999999997754 67999999875
No 39
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.97 E-value=4e-10 Score=97.70 Aligned_cols=49 Identities=18% Similarity=0.097 Sum_probs=44.7
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
..++..|+||++.|.++ ++++|||.||+.||.+||..+.+||+||.++.
T Consensus 11 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CchheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 34678899999999999 89999999999999999998889999998764
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=3.2e-10 Score=101.10 Aligned_cols=46 Identities=33% Similarity=0.574 Sum_probs=40.4
Q ss_pred CCcccccccccCCCCceEecCCCCccchHHHHHHHhcCC---CCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN---LCPICKTTGL 726 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~---sCPlCR~~ll 726 (728)
...|+||++.|.++ +.++|||.||..||..|+..+. .||+||..+.
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 35699999999887 6789999999999999999754 8999999874
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.95 E-value=9e-11 Score=105.93 Aligned_cols=48 Identities=25% Similarity=0.560 Sum_probs=42.3
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhc-CCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTG 725 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~-k~sCPlCR~~l 725 (728)
..++..|+||++.|.++ +.++|||.||..||.+|+.. +..||+||+.+
T Consensus 12 ~~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 12 SLSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp CHHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 34467899999999987 78899999999999999986 66899999976
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.95 E-value=2.9e-10 Score=108.88 Aligned_cols=48 Identities=27% Similarity=0.608 Sum_probs=40.8
Q ss_pred CCCcccccccccCCCCceEecCCCCccchHHHHHHHhc-CCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 726 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~-k~sCPlCR~~ll 726 (728)
+...|+||++.|.++ +..++|||.||..||.+|+.. +..||+||..+.
T Consensus 53 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 456899999999876 333499999999999999997 778999999873
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.94 E-value=4.2e-10 Score=107.34 Aligned_cols=46 Identities=22% Similarity=0.462 Sum_probs=40.9
Q ss_pred CCcccccccccCCCCceEecCCCCccchHHHHHHHhcCC-CCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTGL 726 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~-sCPlCR~~ll 726 (728)
...|+||++.|.++ +.++|||.||..||..|+.... .||+||..+.
T Consensus 78 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 35699999999887 7799999999999999999764 8999999875
No 44
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.93 E-value=5.4e-10 Score=100.02 Aligned_cols=49 Identities=20% Similarity=0.112 Sum_probs=44.6
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
..++..|+||++.|.++ ++++|||.||+.||..||....+||+||.++.
T Consensus 26 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp CSTTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred CcHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 34578899999999999 88999999999999999998889999999864
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.92 E-value=4.7e-10 Score=102.11 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=43.7
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCC-CCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTGL 726 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~-sCPlCR~~ll 726 (728)
...+...|+||++.+.++ +.++|||.||..||.+|+..+. .||+||..+.
T Consensus 14 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 14 PLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 445667899999999887 7789999999999999999765 8999999875
No 46
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.92 E-value=7.9e-10 Score=98.61 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=44.7
Q ss_pred CCCCCcccccccccCCCCceEecCCC-CccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCG-HDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCG-H~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
..++..|+||++.|+++ ++++|| |.||+.||.+||..+.+||+||.++.
T Consensus 19 ~p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred CcHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 34678899999999999 899999 99999999999998889999999874
No 47
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.87 E-value=1.6e-09 Score=109.77 Aligned_cols=50 Identities=16% Similarity=0.101 Sum_probs=43.6
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcC-CCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-NLCPICKTTGL 726 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k-~sCPlCR~~ll 726 (728)
...+...|+||++.|.++ ++++|||+||..||..||... .+||+||.++.
T Consensus 204 ~~~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 344678899999999999 899999999999999999864 45999999874
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.87 E-value=8e-10 Score=100.28 Aligned_cols=52 Identities=29% Similarity=0.652 Sum_probs=44.8
Q ss_pred CCCCCcccccccccCCC----CceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~----d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
..+...|+||++.|.+. ..++.++|||.||..||.+|+..+++||+||+.+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 34667899999998763 34578899999999999999999999999999875
No 49
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=1.3e-09 Score=93.13 Aligned_cols=50 Identities=24% Similarity=0.633 Sum_probs=42.4
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcC--CCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK--NLCPICKTTG 725 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k--~sCPlCR~~l 725 (728)
..+....|+||++.+..++ ....|+|.||..||.+||+.+ .+||+||+..
T Consensus 11 y~~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCC
T ss_pred ccCCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcC
Confidence 4556788999999998763 444899999999999999977 7899999875
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=5.2e-10 Score=89.46 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=39.5
Q ss_pred CCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
.+...|+||++.|.++ +.|+|||.||..||..| ...||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 4567899999999988 78999999999999884 668999999874
No 51
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.84 E-value=1.3e-09 Score=98.49 Aligned_cols=46 Identities=28% Similarity=0.569 Sum_probs=41.3
Q ss_pred CCcccccccccCCCCceEecCCCCccchHHHHHHHhc-CCCCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 726 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~-k~sCPlCR~~ll 726 (728)
+..|+||++.+.++ +.++|||.||..||.+|+.. ...||+||..+.
T Consensus 23 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 56799999999887 77899999999999999997 678999999874
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.78 E-value=2.4e-09 Score=116.56 Aligned_cols=47 Identities=32% Similarity=0.675 Sum_probs=41.8
Q ss_pred CCCcccccccccCCCCceEecCCCCccchHHHHHHHh-cCCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGL 726 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~-~k~sCPlCR~~ll 726 (728)
....|+||++.+.+. +.++|||.||..||..|+. .+..||+||+.+.
T Consensus 331 ~~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 331 TFQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SSSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 346899999998775 8899999999999999999 7889999999874
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.78 E-value=2e-09 Score=88.61 Aligned_cols=47 Identities=32% Similarity=0.658 Sum_probs=40.8
Q ss_pred CCCcccccccccCCCCceEec--CCCCc-cchHHHHHHHhcCCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGIL--DCGHD-FHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~L--pCGH~-FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
++..|.||++.+.+. +.+ ||||. ||..|+..|+..+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456799999997765 555 99999 899999999998899999999874
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.78 E-value=9.9e-10 Score=103.83 Aligned_cols=49 Identities=20% Similarity=0.464 Sum_probs=42.8
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCC-CCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTG 725 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~-sCPlCR~~l 725 (728)
...+...|+||++.+.++ +.++|||.||..||.+|+.... .||+||.++
T Consensus 27 ~l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 345677899999999988 7789999999999999998665 899999865
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.77 E-value=1.3e-09 Score=99.07 Aligned_cols=44 Identities=27% Similarity=0.613 Sum_probs=39.7
Q ss_pred CCcccccccccCCCCceEec-CCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~L-pCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
...|+||++.|.++ +.+ +|||.||..||..|+. ..||+||..+.
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 56799999999988 777 9999999999999998 78999998764
No 56
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.76 E-value=5.4e-09 Score=89.72 Aligned_cols=51 Identities=24% Similarity=0.533 Sum_probs=40.1
Q ss_pred CCCCCcccccccccCCCCceEec--CCCCccchHHHHHHHh-cCCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWLM-QKNLCPICKTTGL 726 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~L--pCGH~FH~~CI~~WL~-~k~sCPlCR~~ll 726 (728)
..++..|+||++.+...+. ..+ +|||.||..||.+|+. ....||+||+.+.
T Consensus 8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 4567889999999865432 233 5999999999999985 3568999999764
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.72 E-value=3.5e-09 Score=86.84 Aligned_cols=47 Identities=30% Similarity=0.627 Sum_probs=40.5
Q ss_pred CCCcccccccccCCCCceEec--CCCCc-cchHHHHHHHhcCCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGIL--DCGHD-FHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~L--pCGH~-FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
....|.||++.+.+. +.+ ||||. ||..|+.+|......||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 456799999987665 445 99998 999999999988889999999874
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=4.4e-09 Score=92.58 Aligned_cols=46 Identities=28% Similarity=0.573 Sum_probs=40.1
Q ss_pred CCCCcccccccccCCCCceEecC-CCCccchHHHHHHHhcC------CCCCC--CCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQK------NLCPI--CKTT 724 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~Lp-CGH~FH~~CI~~WL~~k------~sCPl--CR~~ 724 (728)
.++..|+||++.|.++ ++++ |||.||+.||.+||... ..||+ |++.
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4567899999999998 7885 99999999999999864 48999 9865
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.69 E-value=3e-09 Score=89.61 Aligned_cols=42 Identities=29% Similarity=0.597 Sum_probs=37.5
Q ss_pred CCcccccccccCCCCceEecCCCCc-cchHHHHHHHhcCCCCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~-FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
+..|+||++.+.+. +.++|||. ||..|+..| ..||+||+.+.
T Consensus 24 ~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred CCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 45699999998776 78899999 999999999 88999999875
No 60
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.67 E-value=1e-08 Score=101.02 Aligned_cols=49 Identities=16% Similarity=0.119 Sum_probs=43.2
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcC-CCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-NLCPICKTTGL 726 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k-~sCPlCR~~ll 726 (728)
.-+...|+||++.|.++ ++++|||.||..||..||... .+||+||.++.
T Consensus 103 ip~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 103 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CcHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 34678899999999998 889999999999999999864 47999998764
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.62 E-value=1.3e-08 Score=97.69 Aligned_cols=50 Identities=24% Similarity=0.469 Sum_probs=43.5
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcC-CCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-NLCPICKTTGL 726 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k-~sCPlCR~~ll 726 (728)
...+...|+||++.+.++ +.++|||.||..||.+|+..+ ..||+||..+.
T Consensus 14 ~~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 14 PLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 445678899999999987 778999999999999999865 48999999874
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=4.4e-08 Score=82.46 Aligned_cols=42 Identities=26% Similarity=0.545 Sum_probs=35.8
Q ss_pred CcccccccccCCCCceEecCCCCc-cchHHHHHHHhcCCCCCCCCCCCCC
Q 004836 679 EPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGLP 727 (728)
Q Consensus 679 ~~C~ICLEefee~d~Vv~LpCGH~-FH~~CI~~WL~~k~sCPlCR~~llp 727 (728)
..|+||++.+.+. +.++|||. ||..|+.. ...||+||+.+..
T Consensus 26 ~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 4599999998776 78899999 99999965 3789999998753
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=1.1e-07 Score=79.29 Aligned_cols=47 Identities=23% Similarity=0.614 Sum_probs=39.1
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCc-cchHHHHHHHhcCCCCCCCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGLP 727 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~-FH~~CI~~WL~~k~sCPlCR~~llp 727 (728)
...+...|.||++.+.+. +.+||||. ||..|+.. ...||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 344567899999997765 88999999 99999984 4789999998753
No 64
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.48 E-value=3.1e-08 Score=106.17 Aligned_cols=52 Identities=27% Similarity=0.618 Sum_probs=40.3
Q ss_pred CCCCCcccccccccCCCCce----E-ecCCCCccchHHHHHHHhcC-----------CCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNL----G-ILDCGHDFHTNCIKQWLMQK-----------NLCPICKTTGL 726 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~V----v-~LpCGH~FH~~CI~~WL~~k-----------~sCPlCR~~ll 726 (728)
.+...+|+||++.+.+...+ . ..+|+|.||..||.+||+.. ..||+||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 34567899999999873332 1 23799999999999999842 35999999764
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.42 E-value=8.5e-08 Score=83.82 Aligned_cols=48 Identities=29% Similarity=0.554 Sum_probs=39.4
Q ss_pred CCCcccccccccCCCCceEecCCCCccchHHHHHHHhcC--------CCCCC--CCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK--------NLCPI--CKTT 724 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k--------~sCPl--CR~~ 724 (728)
+..+|+||++++..++.+..++|||.||..||..++..+ ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 456799999999877555555899999999999998732 36999 9987
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.39 E-value=1e-07 Score=78.16 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=41.0
Q ss_pred CCcccccccccCCCCceEec-CCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~L-pCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
...|+||++.++++ +++ +|||+|++.||.+||..+.+||+++.++.
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 35799999999987 777 89999999999999998888999998874
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.38 E-value=5.5e-08 Score=83.30 Aligned_cols=42 Identities=29% Similarity=0.699 Sum_probs=36.3
Q ss_pred CCcccccccccCCCCceEecCCCCc-cchHHHHHHHhcCCCCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~-FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
+..|.||++.+.+. +.+||||. ||..|+..| ..||+||..+.
T Consensus 18 ~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 34699999998765 88899999 999999987 38999999874
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.2e-07 Score=98.42 Aligned_cols=48 Identities=27% Similarity=0.441 Sum_probs=40.6
Q ss_pred CCCCcccccccccCCCCceEe-cCCCCccchHHHHHHHhcC--CCCCC--CCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGI-LDCGHDFHTNCIKQWLMQK--NLCPI--CKTTGL 726 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~-LpCGH~FH~~CI~~WL~~k--~sCPl--CR~~ll 726 (728)
.....|+||++.|.++ +. +.|||.||+.||..|+... ..||+ ||+.+.
T Consensus 179 ~~el~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCC---eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 3557899999999888 55 5999999999999999864 46999 998653
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.29 E-value=1.5e-07 Score=101.28 Aligned_cols=43 Identities=26% Similarity=0.651 Sum_probs=38.4
Q ss_pred CCCcccccccccCCCCceEecCCCCc-cchHHHHHHHhcCCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~LpCGH~-FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
++..|+||++.+.+. +.+||||. ||..|+..| ..||+||..+.
T Consensus 294 ~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 457899999999876 88899999 999999998 78999999874
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.27 E-value=4.5e-07 Score=74.26 Aligned_cols=48 Identities=31% Similarity=0.746 Sum_probs=37.4
Q ss_pred CCCCcccccccccCCCCceEecCCC--C---ccchHHHHHHHhc--CCCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGILDCG--H---DFHTNCIKQWLMQ--KNLCPICKTTGL 726 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~LpCG--H---~FH~~CI~~WL~~--k~sCPlCR~~ll 726 (728)
.+...|.||+++..+ .+ ++||. | .||..||.+|+.. +.+||+||+.+.
T Consensus 4 ~~~~~CrIC~~~~~~--~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGN--ER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSC--CC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCC--ce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 456789999998433 33 57865 4 8999999999984 578999998763
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.61 E-value=3.2e-05 Score=69.57 Aligned_cols=45 Identities=20% Similarity=0.370 Sum_probs=36.9
Q ss_pred cccccccccCCCCceEecCCCCccchHHHHHHHhc-CCCCCCCCCCCC
Q 004836 680 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 726 (728)
Q Consensus 680 ~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~-k~sCPlCR~~ll 726 (728)
.|.+|--.+..- .+.+||+|+||.+|+..|.++ .+.||.|+.++.
T Consensus 3 fC~~C~~Pi~iy--gRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVY--GRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEE--EEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEE--eeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 488887776553 477799999999999999865 588999999874
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.36 E-value=0.00012 Score=74.90 Aligned_cols=47 Identities=23% Similarity=0.608 Sum_probs=39.1
Q ss_pred CCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCC--CCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN--LCPICKTTG 725 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~--sCPlCR~~l 725 (728)
....|.||.+.+..+ ..+-.|+|.||..|+.+|++.+. .||.|+...
T Consensus 179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 477899999999876 33445999999999999998654 899999853
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.12 E-value=0.027 Score=49.21 Aligned_cols=36 Identities=14% Similarity=0.447 Sum_probs=27.4
Q ss_pred CCCcccccccccCCCCceEecCCCCccchHHHHH-HH
Q 004836 677 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQ-WL 712 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~-WL 712 (728)
++..|.||++.+..+-....+.|+|.||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4567999998754433334589999999999998 54
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.03 E-value=0.018 Score=51.29 Aligned_cols=46 Identities=33% Similarity=0.632 Sum_probs=36.8
Q ss_pred CCCCcccccccccCCCCceEecCC-CCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGILDC-GHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~LpC-GH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
-.-..|..|+-+.+ ..+.| .|.+|..|+...|.....||+|++++.
T Consensus 26 ~G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 26 LGPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp SCCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred cCcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 34567999987643 24456 499999999999999999999998763
No 75
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=93.42 E-value=0.072 Score=64.00 Aligned_cols=49 Identities=18% Similarity=0.103 Sum_probs=43.6
Q ss_pred CCCCCcccccccccCCCCceEecCCC-CccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCG-HDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCG-H~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
.-++..|+|-++-+.++ ++++.| ++|-+.+|.+||..+.+||+=|.++.
T Consensus 888 iP~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp SCGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CcHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 34577899999999999 899997 69999999999999999999998764
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.53 E-value=0.12 Score=42.99 Aligned_cols=50 Identities=22% Similarity=0.426 Sum_probs=36.4
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCC----CCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----LCPICKTTGLP 727 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~----sCPlCR~~llp 727 (728)
......|.||.+. ++.+..-.|...||..|+...|.... .||.|+....+
T Consensus 9 ~~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 9 LAPGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp CCTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 3455679999753 44444447999999999998887543 59999876544
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=88.70 E-value=0.29 Score=53.22 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=31.8
Q ss_pred CcccccccccCCCCceEecCCCCccc--hHHHHHHHhcC--CCCCCCCCCCC
Q 004836 679 EPCCICQEEYTDGDNLGILDCGHDFH--TNCIKQWLMQK--NLCPICKTTGL 726 (728)
Q Consensus 679 ~~C~ICLEefee~d~Vv~LpCGH~FH--~~CI~~WL~~k--~sCPlCR~~ll 726 (728)
..|+|-+..+..+ ++...|.|.-| ..-+.....+. -.||+|.+.+.
T Consensus 250 L~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 5799988888776 56778999944 44344433333 35999998764
No 78
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=85.32 E-value=0.19 Score=40.83 Aligned_cols=49 Identities=24% Similarity=0.507 Sum_probs=34.7
Q ss_pred CCCCcccccccccCCCCceEec-CCCCccchHHHHHHHh-----cCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLM-----QKNLCPICKTT 724 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~L-pCGH~FH~~CI~~WL~-----~k~sCPlCR~~ 724 (728)
.+...|+||...+.+...++.- .|...||..|+.--.. .+..||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4566799999988655444333 6999999999974322 34579999653
No 79
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=84.57 E-value=0.97 Score=39.67 Aligned_cols=38 Identities=24% Similarity=0.555 Sum_probs=26.2
Q ss_pred CCCCCCCcccccccccCCCCceEecCCCCccchHHHHHH
Q 004836 673 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQW 711 (728)
Q Consensus 673 ~~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~W 711 (728)
+....++.|.||- .|+..+....--|+-+||..|+++-
T Consensus 10 e~~~~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred cCCCCCcccCccc-cccccceeccccccccccHhhcccc
Confidence 3445678899995 3344433333358999999999985
No 80
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=84.17 E-value=0.7 Score=50.04 Aligned_cols=46 Identities=22% Similarity=0.361 Sum_probs=32.4
Q ss_pred CcccccccccCCCCceEecCCCCc--cchHHHHHHHhcC--CCCCCCCCCCC
Q 004836 679 EPCCICQEEYTDGDNLGILDCGHD--FHTNCIKQWLMQK--NLCPICKTTGL 726 (728)
Q Consensus 679 ~~C~ICLEefee~d~Vv~LpCGH~--FH~~CI~~WL~~k--~sCPlCR~~ll 726 (728)
..|+|-+..+..+ ++...|.|. |-..-+.....++ -.||+|.+.+.
T Consensus 216 L~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 5699988888776 566789999 5554444444433 35999998774
No 81
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=83.54 E-value=0.66 Score=35.96 Aligned_cols=44 Identities=25% Similarity=0.641 Sum_probs=31.1
Q ss_pred cccccccccCCCCceEecCCCCccchHHHHHHHhcC----CCCCCCCC
Q 004836 680 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKT 723 (728)
Q Consensus 680 ~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k----~sCPlCR~ 723 (728)
.|.||...-..++.+..-.|...||..|+..=|... -.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 489998765444444444799999999997655432 25999975
No 82
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=83.47 E-value=0.65 Score=37.68 Aligned_cols=47 Identities=21% Similarity=0.586 Sum_probs=33.7
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcC----CCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKTT 724 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k----~sCPlCR~~ 724 (728)
...+..|.||... ++.+..-.|...||..|+..-+... -.||.|++.
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4456789999873 4444444799999999999765432 259999865
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=82.84 E-value=0.39 Score=39.00 Aligned_cols=49 Identities=29% Similarity=0.637 Sum_probs=34.1
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcC----CCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKTTGL 726 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k----~sCPlCR~~ll 726 (728)
+..+..|.||.+. ++.+..-.|...||..|+..-|... -.||.|+...+
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 3456779999863 3333333699999999998655432 25999987654
No 84
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=79.39 E-value=0.75 Score=41.13 Aligned_cols=39 Identities=21% Similarity=0.445 Sum_probs=29.3
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHh
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM 713 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~ 713 (728)
...++.|.||.+.-+..+.+..-.|+..||..|+...+.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 446788999988744333455568999999999987764
No 85
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=78.58 E-value=0.66 Score=38.76 Aligned_cols=51 Identities=20% Similarity=0.376 Sum_probs=33.9
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhc----CCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ----KNLCPICKTTG 725 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~----k~sCPlCR~~l 725 (728)
..+...|.||.........|..=.|.-.||..|+..-+.. .-.||.|+..+
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 3445669999877543222333369999999999865442 34699997643
No 86
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.49 E-value=2.1 Score=36.16 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=32.0
Q ss_pred CCCcccccccccCCCCceE-ecCCCCccchHHHHHHHh-----cCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLG-ILDCGHDFHTNCIKQWLM-----QKNLCPICKTTG 725 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv-~LpCGH~FH~~CI~~WL~-----~k~sCPlCR~~l 725 (728)
+...| ||...+.+...++ .-.|...||..|+.--.. .+..||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 33445 9998876443333 336999999999963221 345799998754
No 87
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=76.64 E-value=1.3 Score=39.21 Aligned_cols=47 Identities=26% Similarity=0.437 Sum_probs=32.0
Q ss_pred CCCcccccccccCCCCceEecCCCCccchHHHHHHHh---cCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPICKTT 724 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~---~k~sCPlCR~~ 724 (728)
+...| ||-.....+..|..-.|.-.||..|+..=+. ..-.||.|+..
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 33456 8987766654444447999999999975333 23469999854
No 88
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=74.97 E-value=2 Score=33.58 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=30.6
Q ss_pred cccccccccCCCCceEec--CCCCccchHHHHHHH----hcCCCCCCCC
Q 004836 680 PCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWL----MQKNLCPICK 722 (728)
Q Consensus 680 ~C~ICLEefee~d~Vv~L--pCGH~FH~~CI~~WL----~~k~sCPlCR 722 (728)
.|.||...+.+++.++.- .|.--||..|+.--. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 588999988765554443 499999999987321 2567899996
No 89
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.05 E-value=0.41 Score=38.07 Aligned_cols=46 Identities=26% Similarity=0.676 Sum_probs=32.6
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcC----CCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKT 723 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k----~sCPlCR~ 723 (728)
...+..|.||... ++.+..-.|...||..|+..-|... -.||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4456779999875 4444444799999999998655432 24998864
No 90
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=71.70 E-value=1.8 Score=38.01 Aligned_cols=49 Identities=24% Similarity=0.548 Sum_probs=34.7
Q ss_pred CCCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCC----CCCCCCCC
Q 004836 673 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----LCPICKTT 724 (728)
Q Consensus 673 ~~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~----sCPlCR~~ 724 (728)
.....+..|.||... ++.+..-.|--.||..|+.+=|.... .||.|+..
T Consensus 20 ~~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 20 TLDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred ccCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 345566789999865 44444447999999999987665322 59999853
No 91
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.05 E-value=1.3 Score=37.14 Aligned_cols=47 Identities=21% Similarity=0.446 Sum_probs=31.4
Q ss_pred cccccccccCCCCceEecCCCCccchHHHHHHH---------hcCCCCCCCCCCCC
Q 004836 680 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWL---------MQKNLCPICKTTGL 726 (728)
Q Consensus 680 ~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL---------~~k~sCPlCR~~ll 726 (728)
..+||...+....-|..-.|...||..|+.--. ..+..||.|+..-.
T Consensus 17 ~~C~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 17 LYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCSTTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CEEECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 334998887644333444799999999996221 24678999976543
No 92
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=69.55 E-value=0.56 Score=39.10 Aligned_cols=51 Identities=29% Similarity=0.425 Sum_probs=33.9
Q ss_pred CCCCcccccccccCCCCceEe-cCCCCccchHHHHHHH----hcCCCCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGI-LDCGHDFHTNCIKQWL----MQKNLCPICKTTGLP 727 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~-LpCGH~FH~~CI~~WL----~~k~sCPlCR~~llp 727 (728)
.....| ||...+.+++.++. -.|...||..|+.--- ..+..||.|+..-.|
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGP 69 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSS
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCC
Confidence 344557 79887665543433 3699999999987432 234579999765444
No 93
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.37 E-value=0.73 Score=40.49 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=33.9
Q ss_pred CCCCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcC----CCCCCCCC
Q 004836 674 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKT 723 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k----~sCPlCR~ 723 (728)
...+...|.||...-...+.|..=.|...||..|+..=|... =.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 345567799998875433334444799999999998544432 24999964
No 94
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=66.38 E-value=8 Score=34.67 Aligned_cols=33 Identities=24% Similarity=0.566 Sum_probs=23.8
Q ss_pred CCCccccccccc------CCCCceEecCCCCccchHHHH
Q 004836 677 DEEPCCICQEEY------TDGDNLGILDCGHDFHTNCIK 709 (728)
Q Consensus 677 ee~~C~ICLEef------ee~d~Vv~LpCGH~FH~~CI~ 709 (728)
....|.||+..- ..++.+..-.|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 456799998763 223345555899999999995
No 95
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=65.62 E-value=1.1 Score=36.72 Aligned_cols=45 Identities=24% Similarity=0.642 Sum_probs=32.0
Q ss_pred CCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcC----CCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKT 723 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k----~sCPlCR~ 723 (728)
..+..|.||.+. ++.+..-.|.-.||..|+..-|... -.||.|+.
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 456789999864 4444444799999999998655432 24999965
No 96
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=65.43 E-value=1.2 Score=35.69 Aligned_cols=45 Identities=27% Similarity=0.672 Sum_probs=32.0
Q ss_pred CCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcC----CCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKT 723 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k----~sCPlCR~ 723 (728)
..+..|.||... ++.+..-.|.-.||..|+..-|... -.||.|+.
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 356789999874 4444444799999999998655432 24998864
No 97
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=62.88 E-value=14 Score=32.33 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=30.1
Q ss_pred CCCCcccccccccCCCCceEec-CCCCccchHHHHHHHhc
Q 004836 676 SDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQ 714 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~L-pCGH~FH~~CI~~WL~~ 714 (728)
.....|.+|.|.+++..-|.+- -=.|+||.-|-+..++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 4567799999999988544322 24799999999999884
No 98
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=62.68 E-value=9.2 Score=36.29 Aligned_cols=47 Identities=28% Similarity=0.525 Sum_probs=33.9
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHh-----------cCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-----------QKNLCPICKTT 724 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~-----------~k~sCPlCR~~ 724 (728)
+..++.|.||.+. ++.+..=.|-..||..||..-|. ..=.||+|+..
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 4556789999875 44444447999999999997653 12259999864
No 99
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.34 E-value=2.2 Score=36.35 Aligned_cols=46 Identities=26% Similarity=0.530 Sum_probs=30.9
Q ss_pred CCcccccccccCCCCceEecCCCCccchHHHHHHHhc-----CCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-----KNLCPICKT 723 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~-----k~sCPlCR~ 723 (728)
+..|.||...-..++.+..=.|...||..|+..=|.. .=.||.|+.
T Consensus 26 ~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3478899865434433333379999999999855542 225999975
No 100
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=60.69 E-value=5.8 Score=34.97 Aligned_cols=45 Identities=31% Similarity=0.770 Sum_probs=27.7
Q ss_pred CCcccccccccCCCCceEecC--CC-CccchHHHHHHHhc----CCCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILD--CG-HDFHTNCIKQWLMQ----KNLCPICKTTG 725 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~Lp--CG-H~FH~~CI~~WL~~----k~sCPlCR~~l 725 (728)
+..++||..... ++.|..=. |. ..||..|+. |.. +-.||.|+...
T Consensus 35 e~~yCiC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYCLCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCSTTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEEECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 334449988653 32222224 65 689999998 332 33699998754
No 101
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=60.66 E-value=3.4 Score=38.79 Aligned_cols=34 Identities=21% Similarity=0.468 Sum_probs=26.2
Q ss_pred CCCCcccccccccC--CCCceEecCCCCccchHHHH
Q 004836 676 SDEEPCCICQEEYT--DGDNLGILDCGHDFHTNCIK 709 (728)
Q Consensus 676 ~ee~~C~ICLEefe--e~d~Vv~LpCGH~FH~~CI~ 709 (728)
..+..|.+|...|. .+....+..|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 45778999999994 23345666899999999965
No 102
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=60.59 E-value=2.3 Score=35.68 Aligned_cols=49 Identities=18% Similarity=0.451 Sum_probs=31.7
Q ss_pred CCCCCccccccccc-CCCCceEec-CCCCccchHHHHHHHhc--CCCCCCCCC
Q 004836 675 PSDEEPCCICQEEY-TDGDNLGIL-DCGHDFHTNCIKQWLMQ--KNLCPICKT 723 (728)
Q Consensus 675 ~~ee~~C~ICLEef-ee~d~Vv~L-pCGH~FH~~CI~~WL~~--k~sCPlCR~ 723 (728)
...+..|.||.+.- .+.+.++.- .|.-.||..|+..-..- .=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34567899998764 223333333 69999999999853321 225988864
No 103
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=59.97 E-value=1.8 Score=35.92 Aligned_cols=48 Identities=17% Similarity=0.406 Sum_probs=31.6
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHHh---cCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPICKT 723 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~---~k~sCPlCR~ 723 (728)
..+...| ||...+....-|..-.|...||..|+..--. .+-.||.|+.
T Consensus 16 ~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3445557 9988765332334446999999999974322 3456999975
No 104
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=59.72 E-value=6.6 Score=32.33 Aligned_cols=48 Identities=27% Similarity=0.496 Sum_probs=31.9
Q ss_pred CCCCcccccccccCCCCceEec--CCCCccchHHHHHH------Hh----cCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQW------LM----QKNLCPICKT 723 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~L--pCGH~FH~~CI~~W------L~----~k~sCPlCR~ 723 (728)
.....|.+|...+.+.+.++.- .|.-.||..|+.-- |. .+-.||.|++
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 4567899999998776555444 69999999998622 11 1335888853
No 105
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=59.14 E-value=3.3 Score=37.23 Aligned_cols=46 Identities=24% Similarity=0.593 Sum_probs=31.2
Q ss_pred CCcccccccccCC-CCceEecCCCCccchHHHHHHHhcC----CCCCCCCC
Q 004836 678 EEPCCICQEEYTD-GDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKT 723 (728)
Q Consensus 678 e~~C~ICLEefee-~d~Vv~LpCGH~FH~~CI~~WL~~k----~sCPlCR~ 723 (728)
-..|.||.+.-.+ ++.+..-.|...||..|+..-|... =.||.|+.
T Consensus 61 C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3468999875333 3333333699999999998655532 25999985
No 106
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=58.09 E-value=2.5 Score=36.80 Aligned_cols=50 Identities=18% Similarity=0.436 Sum_probs=32.0
Q ss_pred CCCCCccccccccc-CCCCceEe-cCCCCccchHHHHHHHhc--CCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEY-TDGDNLGI-LDCGHDFHTNCIKQWLMQ--KNLCPICKTT 724 (728)
Q Consensus 675 ~~ee~~C~ICLEef-ee~d~Vv~-LpCGH~FH~~CI~~WL~~--k~sCPlCR~~ 724 (728)
..++..|.||...- .+.+.++. -.|.-.||..|+..-+.- .-.||.|+..
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 34667899998764 22223333 369999999999854321 2259999653
No 107
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=57.04 E-value=2.3 Score=35.48 Aligned_cols=45 Identities=24% Similarity=0.612 Sum_probs=28.9
Q ss_pred cccccccccCCCCceEecCCCCccchHHHHHHHhc-----CCCCCCCCCC
Q 004836 680 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-----KNLCPICKTT 724 (728)
Q Consensus 680 ~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~-----k~sCPlCR~~ 724 (728)
.|.||...-..++.+..=.|...||..|+..=|.. .=.||.|+..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 56778754333322222269999999999965542 2259999864
No 108
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=56.16 E-value=8 Score=32.35 Aligned_cols=43 Identities=28% Similarity=0.681 Sum_probs=27.4
Q ss_pred CCcccccccccCCCCceEec-C--CC-CccchHHHHHHHhc----CCCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGIL-D--CG-HDFHTNCIKQWLMQ----KNLCPICKTTG 725 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~L-p--CG-H~FH~~CI~~WL~~----k~sCPlCR~~l 725 (728)
...| ||..... ++ ++.- . |. ..||..|+. |.. +-.||.|+...
T Consensus 16 ~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 16 PTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3445 8987643 32 3332 4 66 689999998 442 23599998753
No 109
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=54.68 E-value=4.5 Score=41.21 Aligned_cols=47 Identities=23% Similarity=0.551 Sum_probs=28.2
Q ss_pred CCcccccccccCCCCceEecCCCCccchHHHHHHHhc-----CCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-----KNLCPICKTT 724 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~-----k~sCPlCR~~ 724 (728)
+..|.||...-..++.+.+=.|...||..|+.+=|.. .=.||.|+..
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 3468888775434444444479999999999965542 1259999864
No 110
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=54.01 E-value=2.6 Score=35.98 Aligned_cols=44 Identities=25% Similarity=0.603 Sum_probs=28.2
Q ss_pred cccccccccCCCCceEecCCCCccchHHHHHHHhcC-----CCCCCCCC
Q 004836 680 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-----NLCPICKT 723 (728)
Q Consensus 680 ~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k-----~sCPlCR~ 723 (728)
.|.||...-...+.+..=.|...||..|+..-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 567776654333223333699999999999665532 25999986
No 111
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=53.42 E-value=8.5 Score=32.28 Aligned_cols=32 Identities=31% Similarity=0.736 Sum_probs=25.5
Q ss_pred CCCCcccccccccCCCCceEecCC-CCccchHHHHHH
Q 004836 676 SDEEPCCICQEEYTDGDNLGILDC-GHDFHTNCIKQW 711 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~LpC-GH~FH~~CI~~W 711 (728)
.+..-|.||.++- .++.+.| +-+||..|.+.-
T Consensus 6 ee~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNEDA----TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSCC----CEEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCCC----eEEecCCCCceehHHHHHHH
Confidence 3456699999982 3688899 899999998764
No 112
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.90 E-value=1.8 Score=37.58 Aligned_cols=47 Identities=21% Similarity=0.535 Sum_probs=31.3
Q ss_pred CCCcccccccccCC-CCceEec-CCCCccchHHHHHHHhc--------CCCCCCCCC
Q 004836 677 DEEPCCICQEEYTD-GDNLGIL-DCGHDFHTNCIKQWLMQ--------KNLCPICKT 723 (728)
Q Consensus 677 ee~~C~ICLEefee-~d~Vv~L-pCGH~FH~~CI~~WL~~--------k~sCPlCR~ 723 (728)
.+..|.||...-.. .+.++.- .|...||..|+..-|.. .=.|+.|+.
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 35679999986443 2233333 69999999999865541 225998864
No 113
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=50.38 E-value=6.9 Score=31.60 Aligned_cols=50 Identities=30% Similarity=0.659 Sum_probs=33.5
Q ss_pred CCCCCcccccccccCC--CCceEecCCCCccchHHHHHHHh-------cCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTD--GDNLGILDCGHDFHTNCIKQWLM-------QKNLCPICKTT 724 (728)
Q Consensus 675 ~~ee~~C~ICLEefee--~d~Vv~LpCGH~FH~~CI~~WL~-------~k~sCPlCR~~ 724 (728)
..++..|.||.....+ ++.+..-.|.-.||..|+..-|. ..-.||.|+..
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 3456789999987533 33333336999999999986442 22359998654
No 114
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=50.07 E-value=7.5 Score=31.76 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=30.6
Q ss_pred CcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCC
Q 004836 679 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 722 (728)
Q Consensus 679 ~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR 722 (728)
..|--|+..|.+......-.|++.||.+|=.---+.-..||-|-
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGCI 59 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTTC
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCCC
Confidence 45999999986542233557999999999544333446799883
No 115
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=49.96 E-value=19 Score=31.86 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=35.4
Q ss_pred CCCcccccccccCCCC---c-eEecCCCCccchHHHHHHHh-cCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGD---N-LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTG 725 (728)
Q Consensus 677 ee~~C~ICLEefee~d---~-Vv~LpCGH~FH~~CI~~WL~-~k~sCPlCR~~l 725 (728)
....|-||=+++-... . |..-.|+--.|+.|+.-=.+ ....||-|++..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcc
Confidence 4578999999865322 2 23347998899999985444 567899999865
No 116
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=48.26 E-value=10 Score=33.95 Aligned_cols=48 Identities=27% Similarity=0.542 Sum_probs=33.8
Q ss_pred CCcccccccccCCCCceEec--CCCCccchHHHHHH------Hh----cCCCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQW------LM----QKNLCPICKTTG 725 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~L--pCGH~FH~~CI~~W------L~----~k~sCPlCR~~l 725 (728)
...|.||...|.+...++.- .|.-.||..|+.-- |. .+-.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 45799999998766555444 59999999998622 10 334699997543
No 117
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=47.34 E-value=6.2 Score=33.31 Aligned_cols=48 Identities=19% Similarity=0.365 Sum_probs=31.5
Q ss_pred CCCcccccccccCCCCceEec--CCCCccchHHHHHHH---------hcCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWL---------MQKNLCPICKTTG 725 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~L--pCGH~FH~~CI~~WL---------~~k~sCPlCR~~l 725 (728)
....| ||-.....+..|..= .|...||..|+.--- ..+..||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 34456 898875455334444 599999999996322 1345799997643
No 118
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=45.73 E-value=21 Score=33.40 Aligned_cols=47 Identities=28% Similarity=0.545 Sum_probs=31.8
Q ss_pred CCCCCcccccccccCCCCceEecCCCCccchHHHHHHH------h-----cCCCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWL------M-----QKNLCPICKTT 724 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL------~-----~k~sCPlCR~~ 724 (728)
+..++.|.||-+. ++.+..=.|-..||.+||.+-+ + ..=.|++|+..
T Consensus 54 Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 4456679999865 4333333699999999999752 1 11259999764
No 119
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=45.48 E-value=13 Score=33.68 Aligned_cols=42 Identities=31% Similarity=0.702 Sum_probs=27.3
Q ss_pred CCCCCcccccccccCCCCceEecC---CCCccchHHHHHHHhcCC----CCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGILD---CGHDFHTNCIKQWLMQKN----LCPICK 722 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~Lp---CGH~FH~~CI~~WL~~k~----sCPlCR 722 (728)
...++.|.||.+. + +++.-. |-..||..|+. |.... .||.|+
T Consensus 12 ~~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 12 QMHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CSSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 4566779999842 3 333333 88999999997 44322 377554
No 120
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=42.65 E-value=3.7 Score=36.53 Aligned_cols=45 Identities=22% Similarity=0.486 Sum_probs=30.0
Q ss_pred cccccccccCCCCceEecCCCCccchHHHHHHHhcC----CCCCCCCCC
Q 004836 680 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKTT 724 (728)
Q Consensus 680 ~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k----~sCPlCR~~ 724 (728)
.|.||...-.+...+..-.|...||..|+.+-|... -.||.|+..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 577887664444334444799999999998655432 258888653
No 121
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=42.27 E-value=14 Score=33.29 Aligned_cols=33 Identities=21% Similarity=0.470 Sum_probs=23.4
Q ss_pred CcccccccccC-------CCCceEecCCCCccchHHHHHH
Q 004836 679 EPCCICQEEYT-------DGDNLGILDCGHDFHTNCIKQW 711 (728)
Q Consensus 679 ~~C~ICLEefe-------e~d~Vv~LpCGH~FH~~CI~~W 711 (728)
..|.||+..-. .++.+....|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999987642 1233455579999999999754
No 122
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=41.32 E-value=22 Score=30.26 Aligned_cols=39 Identities=18% Similarity=0.344 Sum_probs=28.4
Q ss_pred CCCCCCCcccccccccCCCCc-eEecCCCCccchHHHHHH
Q 004836 673 EIPSDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQW 711 (728)
Q Consensus 673 ~~~~ee~~C~ICLEefee~d~-Vv~LpCGH~FH~~CI~~W 711 (728)
..+.+...|.+|...|..-.. --.-.||++||..|....
T Consensus 16 ~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred ccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 345566789999999976432 233479999999998764
No 123
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=41.21 E-value=3.5 Score=38.09 Aligned_cols=46 Identities=26% Similarity=0.564 Sum_probs=28.7
Q ss_pred CCCCcccccccccCCCCc-eEecCCCCccchHHHHHHHhcCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLMQKNLCPIC 721 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~-Vv~LpCGH~FH~~CI~~WL~~k~sCPlC 721 (728)
.....|.+|...|..-.. -..-.||.+||..|..........|-.|
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 345679999999875322 2344799999999977665545566665
No 124
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.99 E-value=22 Score=30.24 Aligned_cols=38 Identities=16% Similarity=0.375 Sum_probs=27.1
Q ss_pred CCCCCCcccccccccCCCCc-eEecCCCCccchHHHHHH
Q 004836 674 IPSDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQW 711 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~-Vv~LpCGH~FH~~CI~~W 711 (728)
.+.+...|.+|...|..-.. --.-.||.+||..|....
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 44556789999999975422 123369999999997653
No 125
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=37.71 E-value=22 Score=38.89 Aligned_cols=47 Identities=19% Similarity=0.405 Sum_probs=33.0
Q ss_pred CCCCCcccccccccCCCCceEec--CCCCccchHHHHHHHhcC----------CCCCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWLMQK----------NLCPICKTT 724 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~L--pCGH~FH~~CI~~WL~~k----------~sCPlCR~~ 724 (728)
+..+..|.||-+. ++.+.+= .|...||..||+.++... =.|=+|.-.
T Consensus 90 DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 90 DGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 4446679999865 3444444 699999999999988422 248888643
No 126
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=37.35 E-value=7 Score=41.91 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=0.0
Q ss_pred CCCCcccccccccCCCCc-eEecCCCCccchHHHHHHHh-------cCCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLM-------QKNLCPICKTTG 725 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~-Vv~LpCGH~FH~~CI~~WL~-------~k~sCPlCR~~l 725 (728)
.+...|.+|...|..-.. -.+-.||++||..|...++. ....|-.|-..+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 345679999999874321 23447999999999987642 134688886554
No 127
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=36.57 E-value=5.4 Score=32.17 Aligned_cols=41 Identities=29% Similarity=0.720 Sum_probs=25.6
Q ss_pred CcccccccccCCCCceEec-C--CC-CccchHHHHHHHhc----CCCCCCCCC
Q 004836 679 EPCCICQEEYTDGDNLGIL-D--CG-HDFHTNCIKQWLMQ----KNLCPICKT 723 (728)
Q Consensus 679 ~~C~ICLEefee~d~Vv~L-p--CG-H~FH~~CI~~WL~~----k~sCPlCR~ 723 (728)
..++||..... + .++.- . |. ..||..|+. |.. +-.||.|+.
T Consensus 10 ~~~C~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYCLCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEETTTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEEECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34449987643 3 23332 4 55 689999998 443 235999965
No 128
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=36.44 E-value=7.9 Score=35.14 Aligned_cols=25 Identities=28% Similarity=0.591 Sum_probs=16.7
Q ss_pred EecCCCCccchHHHHHHHhcCCCCCCCCCC
Q 004836 695 GILDCGHDFHTNCIKQWLMQKNLCPICKTT 724 (728)
Q Consensus 695 v~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ 724 (728)
.+..||+.|. .-+.....||.|+.+
T Consensus 69 ~C~~CG~~F~-----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 69 QCRKCGFVFK-----AEINIPSRCPKCKSE 93 (105)
T ss_dssp BBTTTCCBCC-----CCSSCCSSCSSSCCC
T ss_pred ChhhCcCeec-----ccCCCCCCCcCCCCC
Confidence 4667999992 122334579999975
No 129
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.35 E-value=35 Score=28.27 Aligned_cols=40 Identities=30% Similarity=0.612 Sum_probs=25.6
Q ss_pred CCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 725 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~l 725 (728)
.....|..|-+.+...+.+. .-+..||..|. .|-.|++.|
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L 52 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATL 52 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBC
T ss_pred CCCCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCc
Confidence 34567999999887665443 34667777772 355555544
No 130
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=36.18 E-value=22 Score=30.16 Aligned_cols=38 Identities=21% Similarity=0.497 Sum_probs=27.4
Q ss_pred CCCCCCcccccccccCCCCc-eEecCCCCccchHHHHHH
Q 004836 674 IPSDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQW 711 (728)
Q Consensus 674 ~~~ee~~C~ICLEefee~d~-Vv~LpCGH~FH~~CI~~W 711 (728)
.+.+...|.+|...|..-.. -..-.||.+||..|....
T Consensus 15 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 34456679999999975422 123379999999998754
No 131
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=35.52 E-value=19 Score=33.07 Aligned_cols=36 Identities=17% Similarity=0.440 Sum_probs=26.2
Q ss_pred CCCCcccccccccCCCCc-eEecCCCCccchHHHHHH
Q 004836 676 SDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQW 711 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~-Vv~LpCGH~FH~~CI~~W 711 (728)
.+...|.+|...|..-.. -..-.||++||..|....
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 345679999999875422 233479999999997654
No 132
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=35.50 E-value=20 Score=31.03 Aligned_cols=37 Identities=24% Similarity=0.421 Sum_probs=27.1
Q ss_pred CCCCcccccccccCCCCc-eEecCCCCccchHHHHHHH
Q 004836 676 SDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWL 712 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~-Vv~LpCGH~FH~~CI~~WL 712 (728)
.+...|.+|...|..-.. -..-.||++||..|...++
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 345679999999875422 2344799999999987654
No 133
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=35.05 E-value=17 Score=34.80 Aligned_cols=46 Identities=22% Similarity=0.485 Sum_probs=31.6
Q ss_pred CCCcccccccccC--CCCceEecCCCCccchHHHHHHHhcCC--CCCCCCC
Q 004836 677 DEEPCCICQEEYT--DGDNLGILDCGHDFHTNCIKQWLMQKN--LCPICKT 723 (728)
Q Consensus 677 ee~~C~ICLEefe--e~d~Vv~LpCGH~FH~~CI~~WL~~k~--sCPlCR~ 723 (728)
.+..|.+|+..|. .+....+..|.|.+|..|-. |+.... .|=+|++
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 4678999999864 34456677899999999972 333222 3666643
No 134
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=34.78 E-value=26 Score=30.30 Aligned_cols=36 Identities=25% Similarity=0.495 Sum_probs=26.2
Q ss_pred CCCCcccccccccCCCCce-EecCCCCccchHHHHHH
Q 004836 676 SDEEPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQW 711 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~V-v~LpCGH~FH~~CI~~W 711 (728)
.+...|.+|...|..-..- -.-.||++||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 4556799999998764322 23479999999997654
No 135
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.53 E-value=29 Score=28.06 Aligned_cols=39 Identities=23% Similarity=0.506 Sum_probs=24.4
Q ss_pred CCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
...|..|-+.+...+.+. .-+..||..| ..|-.|++.|.
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFC--------LKCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTT--------CBCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCC--------CCCCCCCCccC
Confidence 456888888877555443 3466777766 34666766553
No 136
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.93 E-value=20 Score=35.58 Aligned_cols=34 Identities=24% Similarity=0.505 Sum_probs=25.3
Q ss_pred CCcccccccccCCCCc-eEecCCCCccchHHHHHH
Q 004836 678 EEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQW 711 (728)
Q Consensus 678 e~~C~ICLEefee~d~-Vv~LpCGH~FH~~CI~~W 711 (728)
...|.+|...|..-.. -.+-.||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 4689999999875322 234479999999997754
No 137
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=32.74 E-value=9.6 Score=30.92 Aligned_cols=39 Identities=15% Similarity=0.453 Sum_probs=27.6
Q ss_pred CCCcccccccccCCCCc---eEecC--CCCccchHHHHHHHhcC
Q 004836 677 DEEPCCICQEEYTDGDN---LGILD--CGHDFHTNCIKQWLMQK 715 (728)
Q Consensus 677 ee~~C~ICLEefee~d~---Vv~Lp--CGH~FH~~CI~~WL~~k 715 (728)
....|+-|.-.++..+- +.... |++.||..|...|-...
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 34568888887776442 33334 89999999999997644
No 138
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=32.29 E-value=15 Score=33.04 Aligned_cols=11 Identities=36% Similarity=1.117 Sum_probs=10.4
Q ss_pred cchHHHHHHHh
Q 004836 703 FHTNCIKQWLM 713 (728)
Q Consensus 703 FH~~CI~~WL~ 713 (728)
||+.|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 139
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=32.13 E-value=21 Score=35.77 Aligned_cols=35 Identities=23% Similarity=0.531 Sum_probs=26.1
Q ss_pred CCCcccccccccCCCCc-eEecCCCCccchHHHHHH
Q 004836 677 DEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQW 711 (728)
Q Consensus 677 ee~~C~ICLEefee~d~-Vv~LpCGH~FH~~CI~~W 711 (728)
+...|.+|...|..-.. -.+-.||++||..|....
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 34689999999885432 234479999999998754
No 140
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=31.75 E-value=16 Score=32.90 Aligned_cols=11 Identities=55% Similarity=1.428 Sum_probs=10.4
Q ss_pred cchHHHHHHHh
Q 004836 703 FHTNCIKQWLM 713 (728)
Q Consensus 703 FH~~CI~~WL~ 713 (728)
||+.|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 141
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=31.51 E-value=13 Score=31.04 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=31.3
Q ss_pred CCCcccccccccCCCCceEe-cCCCCccchHHHHHHHh-----cCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGI-LDCGHDFHTNCIKQWLM-----QKNLCPICKTT 724 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~-LpCGH~FH~~CI~~WL~-----~k~sCPlCR~~ 724 (728)
.....+||...+..+..++. -.|.--||..|+.---. ....||.|+..
T Consensus 8 ~~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 8 TVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CCeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 34446699887754433333 36999999999964321 34569999753
No 142
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=31.22 E-value=30 Score=28.63 Aligned_cols=33 Identities=18% Similarity=0.416 Sum_probs=24.2
Q ss_pred CcccccccccCCCCc-eEecCCCCccchHHHHHH
Q 004836 679 EPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQW 711 (728)
Q Consensus 679 ~~C~ICLEefee~d~-Vv~LpCGH~FH~~CI~~W 711 (728)
..|.+|...|..-.. --.-.||.+||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 579999999875421 123369999999997643
No 143
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.59 E-value=38 Score=28.04 Aligned_cols=39 Identities=26% Similarity=0.578 Sum_probs=26.3
Q ss_pred CCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 725 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~l 725 (728)
....|.-|-+.+...+.+.. -+..||..| ..|-.|+..|
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L 52 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVIL 52 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBC
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCc
Confidence 45679999888876655544 366777766 3477777655
No 144
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=30.19 E-value=25 Score=28.50 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=29.7
Q ss_pred CCCcccccccccCCCCceEecCCCCccch-HHHHHHHhcCCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGILDCGHDFHT-NCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~LpCGH~FH~-~CI~~WL~~k~sCPlCR~~ll 726 (728)
+-..|..|...+.... ....=+..||. .|..+-+ ...|-.|...+.
T Consensus 26 ~CF~C~~C~~~L~~~~--~~~~~g~~yC~~~cy~~~f--~~~C~~C~~~~~ 72 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG--HAEHEGKPYCNHPCYSAMF--GPKGFGRGGAES 72 (76)
T ss_dssp TTCBCTTTCCBCCTTT--EEEETTEEEETTTHHHHHS--SCCCSSCCCSSS
T ss_pred CCCCccccCccCCCCc--eECcCCeEeeCHHHHHHHh--CccCCCcCCcee
Confidence 4577888888877652 12235677888 5876643 445888876543
No 145
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=29.94 E-value=11 Score=42.34 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=31.1
Q ss_pred CCCcccccccccCCCCceE-ecCCCCccchHHHHHHHh-----cCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLG-ILDCGHDFHTNCIKQWLM-----QKNLCPICKT 723 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv-~LpCGH~FH~~CI~~WL~-----~k~sCPlCR~ 723 (728)
.+...|||...+..+..++ +-.|.-.||..|+.---. .+-.||.|+.
T Consensus 35 ~~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 35 PPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp CCCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred CCCeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 3444569988875444443 446999999999963222 2346999974
No 146
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=29.19 E-value=8.5 Score=34.65 Aligned_cols=45 Identities=22% Similarity=0.543 Sum_probs=30.8
Q ss_pred CcccccccccCCCCceEecCCCCccchHHHHHHHhcC----CCCCCCCC
Q 004836 679 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKT 723 (728)
Q Consensus 679 ~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k----~sCPlCR~ 723 (728)
..|.||...-.+++.+..-.|...||..|+..=|... =.||.|+.
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence 3688898765455444444799999999998644432 24888864
No 147
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=28.60 E-value=9.3 Score=30.78 Aligned_cols=40 Identities=30% Similarity=0.723 Sum_probs=25.5
Q ss_pred cccccccccCCCCceEec-C--CC-CccchHHHHHHHhc----CCCCCCCCC
Q 004836 680 PCCICQEEYTDGDNLGIL-D--CG-HDFHTNCIKQWLMQ----KNLCPICKT 723 (728)
Q Consensus 680 ~C~ICLEefee~d~Vv~L-p--CG-H~FH~~CI~~WL~~----k~sCPlCR~ 723 (728)
.++||..... + .++.- . |. ..||..|+. |.. +-.||.|+.
T Consensus 10 ~yC~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 10 TYCLCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp EETTTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred cEEECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3449988642 3 23332 4 66 699999998 332 235999965
No 148
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=27.48 E-value=6.8 Score=32.17 Aligned_cols=42 Identities=21% Similarity=0.423 Sum_probs=26.3
Q ss_pred ccccccccCCCCceEec---CCCCccchHHHHHHH---h-----cCCCCCCCCC
Q 004836 681 CCICQEEYTDGDNLGIL---DCGHDFHTNCIKQWL---M-----QKNLCPICKT 723 (728)
Q Consensus 681 C~ICLEefee~d~Vv~L---pCGH~FH~~CI~~WL---~-----~k~sCPlCR~ 723 (728)
-+||-.....+ .++.- .|...||..|+.--- . .+..||.||.
T Consensus 12 ~C~C~~~~~~g-~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 12 RCICSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CCTTCCCSCCS-CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EeECCCCcCCC-CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 34897665544 34444 388999999984211 1 2356999974
No 149
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=26.55 E-value=12 Score=29.05 Aligned_cols=43 Identities=19% Similarity=0.504 Sum_probs=28.1
Q ss_pred ccccccccCCCCceEecCCCCccchHHHHHHH---hcCCCCCCCCC
Q 004836 681 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWL---MQKNLCPICKT 723 (728)
Q Consensus 681 C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL---~~k~sCPlCR~ 723 (728)
-.||........-+..-.|..-||..|+.--- ..+-.||.|+.
T Consensus 6 ~C~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 6 TCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp CSTTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EEEeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 35787765533333334699999999997432 23457999975
No 150
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.44 E-value=41 Score=28.20 Aligned_cols=38 Identities=21% Similarity=0.419 Sum_probs=21.7
Q ss_pred CCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 725 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~l 725 (728)
....|..|-+.+.. + .+..-+..||..| ..|-.|++.|
T Consensus 24 ~~~~C~~C~~~I~~-~--~v~a~~~~~H~~C--------F~C~~C~~~L 61 (90)
T 2dar_A 24 RTPMCAHCNQVIRG-P--FLVALGKSWHPEE--------FNCAHCKNTM 61 (90)
T ss_dssp CCCBBSSSCCBCCS-C--EEEETTEEECTTT--------CBCSSSCCBC
T ss_pred CCCCCccCCCEecc-e--EEEECCccccccC--------CccCCCCCCC
Confidence 34567777777642 2 2223466677665 3466666554
No 151
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.94 E-value=41 Score=27.48 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=24.1
Q ss_pred CCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 725 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~l 725 (728)
....|..|-+.+... .+..-+..||..|. .|-.|++.|
T Consensus 14 ~~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV---FVKLRDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCCCSSSCCCCCSS---CEECSSCEECTTTT--------SCSSSCCCH
T ss_pred CCCccccCCCCccCc---EEEECcceeCcCcC--------eeCCCCCCC
Confidence 456788888887753 23335677887773 466666554
No 152
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.89 E-value=48 Score=29.53 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=34.4
Q ss_pred CcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004836 679 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 727 (728)
Q Consensus 679 ~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~llp 727 (728)
..|..|...+.+........=+..||..|..+-+..+..|-.|...|.+
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 5688888877531111223456789999998877666689999998864
No 153
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=25.57 E-value=43 Score=32.39 Aligned_cols=45 Identities=18% Similarity=0.443 Sum_probs=31.4
Q ss_pred CCCCCcccccccccCCCCceEec---CCCCccchHHHHHHHhcCC----------CCCCCCC
Q 004836 675 PSDEEPCCICQEEYTDGDNLGIL---DCGHDFHTNCIKQWLMQKN----------LCPICKT 723 (728)
Q Consensus 675 ~~ee~~C~ICLEefee~d~Vv~L---pCGH~FH~~CI~~WL~~k~----------sCPlCR~ 723 (728)
+.-+..|.||-+. + +|..- .|...||..||+.++.... .|=+|.-
T Consensus 76 DG~~~yC~wC~~G---g-~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 76 DGYQSYCTICCGG---R-EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TSSBSSCTTTSCC---S-EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCcceeeEecCC---C-eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 4446679999864 3 33333 4999999999999876421 3877764
No 154
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=24.85 E-value=12 Score=30.39 Aligned_cols=42 Identities=29% Similarity=0.687 Sum_probs=26.1
Q ss_pred CcccccccccCCCCceEec-C--CC-CccchHHHHHHHhc----CCCCCCCCCC
Q 004836 679 EPCCICQEEYTDGDNLGIL-D--CG-HDFHTNCIKQWLMQ----KNLCPICKTT 724 (728)
Q Consensus 679 ~~C~ICLEefee~d~Vv~L-p--CG-H~FH~~CI~~WL~~----k~sCPlCR~~ 724 (728)
...+||..... + .++.- . |. ..||..|+. |.. +-.||.|+..
T Consensus 11 ~~yC~C~~~~~-g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 11 PTYCLCNQVSY-G-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CEETTTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CcEEECCCCCC-C-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 33449988632 3 23333 4 55 899999998 332 3359999753
No 155
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.85 E-value=61 Score=26.58 Aligned_cols=38 Identities=13% Similarity=0.287 Sum_probs=21.5
Q ss_pred CCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 725 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~l 725 (728)
....|.-|-+.+.+. . +..-+..||..| ..|-.|++.|
T Consensus 14 ~~~~C~~C~~~I~~~-~--v~a~~~~~H~~C--------F~C~~C~~~L 51 (79)
T 2cor_A 14 GKYICQKCHAIIDEQ-P--LIFKNDPYHPDH--------FNCANCGKEL 51 (79)
T ss_dssp CCCBCTTTCCBCCSC-C--CCCSSSCCCTTT--------SBCSSSCCBC
T ss_pred CCCCCccCCCEecce-E--EEECcceeCCCC--------CEeCCCCCcc
Confidence 345677777776622 2 223456666655 3466666654
No 156
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.76 E-value=56 Score=27.30 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=25.5
Q ss_pred CCCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 676 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 676 ~ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
.....|..|-+.+... . +..-+..||.+| ..|-.|++.|.
T Consensus 23 ~~~~~C~~C~~~I~~~-~--~~a~~~~~H~~C--------F~C~~C~~~L~ 62 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGA-V--VKARDKYRHPEC--------FVCADCNLNLK 62 (89)
T ss_dssp CSCCBCTTTCCBCCSC-C--EESSSCEECTTT--------CCCSSSCCCTT
T ss_pred CcCCCcccCCCEeccc-E--EEECCceECccC--------CEecCCCCCCC
Confidence 3446788888887752 2 234567788777 34777776653
No 157
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=22.84 E-value=41 Score=32.38 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=16.0
Q ss_pred ceEecCCCCccchHHHHHHHhcCCCCCCCCCC
Q 004836 693 NLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 724 (728)
Q Consensus 693 ~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ 724 (728)
.-++..|||++-. ..-..||+|..+
T Consensus 138 ~~~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 138 VYICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp EEECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred eeEeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 3456668887762 222379999864
No 158
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.63 E-value=75 Score=25.81 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=24.9
Q ss_pred CCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
...|..|-+.+...+.++. .-+..||..| ..|-.|++.|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVE-YKGTVWHKDC--------FTCSNCKQVIG 54 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEE-CSSCEEETTT--------CCCSSSCCCCT
T ss_pred CCcCccCCcccccCceEEE-ECcccccccc--------CchhhCCCccC
Confidence 3568888888775544322 2466777766 34677776653
No 159
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=22.32 E-value=43 Score=29.90 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=23.4
Q ss_pred CCCcccccccccCCCCceEecCCCCccchHHHHHHHh
Q 004836 677 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM 713 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~ 713 (728)
+-+.|.+|...+..++.... .=+..||..|..+.+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~-~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLL-INSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEE-CSSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEEe-eCCEEEcHHHhHHHhc
Confidence 45677888777755443332 3467788888877664
No 160
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=22.08 E-value=9.9 Score=34.15 Aligned_cols=39 Identities=28% Similarity=0.500 Sum_probs=25.3
Q ss_pred CcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCC
Q 004836 679 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 725 (728)
Q Consensus 679 ~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~l 725 (728)
..|++|..+++-. =++.+|..|-.. +.....||-|.+++
T Consensus 33 ~~CP~Cq~eL~~~-------g~~~hC~~C~~~-f~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQD-------NGHARCRSCGEF-IEMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEE-------TTEEEETTTCCE-EEEEEECTTTCSBC
T ss_pred ccCccCCCcceec-------CCEEECccccch-hhccccCcchhhHH
Confidence 6799999886532 234446666443 34455799999876
No 161
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=21.90 E-value=51 Score=29.26 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=28.1
Q ss_pred CCCcccccccccCCCCceEecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004836 677 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 726 (728)
Q Consensus 677 ee~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~k~sCPlCR~~ll 726 (728)
+-..|..|...+.+........=|..||..|..+-+..+..|..|.+.|.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 34567777766653111122234566777777665544446777777664
No 162
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.24 E-value=66 Score=25.48 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=19.8
Q ss_pred CCcccccccccCCCCceEecCCCCccchHHHHHHHhc
Q 004836 678 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ 714 (728)
Q Consensus 678 e~~C~ICLEefee~d~Vv~LpCGH~FH~~CI~~WL~~ 714 (728)
-..|..|...+... . ....=+..||..|..+.+..
T Consensus 33 CF~C~~C~~~L~~~-~-~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 33 CFVCSTCRAQLRGQ-H-FYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TCBCSSSCCBCTTS-C-EEESSSCEEEHHHHHHHHHT
T ss_pred CCcccccCCcCCcC-c-CEeeCCeEECHHHHHHHHcc
Confidence 45677777666422 1 22334667777777666543
No 163
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=20.31 E-value=31 Score=32.49 Aligned_cols=25 Identities=28% Similarity=0.620 Sum_probs=15.8
Q ss_pred EecCCCCccchHHHHHHHhcCCCCCCCCCCC
Q 004836 695 GILDCGHDFHTNCIKQWLMQKNLCPICKTTG 725 (728)
Q Consensus 695 v~LpCGH~FH~~CI~~WL~~k~sCPlCR~~l 725 (728)
++..|||.|-.. .....||.|..++
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBE
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCcc
Confidence 556677777532 2234799998764
Done!