BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004839
(728 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
Length = 751
Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 174/682 (25%), Positives = 306/682 (44%), Gaps = 85/682 (12%)
Query: 64 YYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGY 123
YY R +GK Y + CR + K P D + E+ ++D NQ AE G
Sbjct: 130 YYTREVKGKPYKIYCR--------VFTDKEPG---DVAA----EEVIIDVNQVAE---GK 171
Query: 124 AYEELSEVSP---DHKFLAYTMYDKDNDYFTLSVRNLN--SGALCSKPQAVRVSNIAWAK 178
A+ ++ EV P +H +A+++ N+ +T+ + ++ S + K I W
Sbjct: 172 AFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTN-GEIVWGP 230
Query: 179 DGQALIYVVTDQNKRPYQIYCSIIGS-TDEDALLLEESNENVYVNIRHTKDFHFVCVHTF 237
D +L YV D+ R +++ ++G ED L EE N + D + +C+ +
Sbjct: 231 DHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQ 290
Query: 238 STTSSKVFLIN--AADPFSGLTLIWECE-GLAHCIVEHHEGFLYLFTDAAKEGQEADNHY 294
S +++V L++ + + L ++ E G+ + + H L + T+ EG A NH
Sbjct: 291 SPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTN---EGG-AVNHK 346
Query: 295 LLRCPVDASFPSRTWESVFID-DQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAG 353
LL P PS W V +D + + +E + ++ + R R+ ++ G
Sbjct: 347 LLIAP--RGQPS-DWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDG 403
Query: 354 --KGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGK 411
K L+E+ + P + +V +Y T R SS P+
Sbjct: 404 VFKAGTGLREV---VMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNT---------- 450
Query: 412 WNIIQQQNMLRERTRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYD 471
W + Q+ ++++ V E+ D + Y E+
Sbjct: 451 WFDVSPQD--------------------HSRTAVKVREVGGGFD------AANYKVERRF 484
Query: 472 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFA 531
+ D +PL+++Y P +L+G+G+YG +D ++ + DRG + A A
Sbjct: 485 ATAPDQTKIPLSVVYHKDLDMSQPQPCMLYGYGSYGLSMDPQFSIQHLPYCDRGMIFAIA 544
Query: 532 DVRXXXXXXKKWHHDGRR-TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVA 590
+R + W+ G + K N+ DFI+ A FL+ ++ +LA G SAGGLL+
Sbjct: 545 HIRGGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMG 604
Query: 591 AAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYD 650
A +N PDLF+ + VPF+D T+ P +PL ++EE+G P + + + +YSP D
Sbjct: 605 AVLNMRPDLFKVALAGVPFVDVMTTMCDPSIPLTTGEWEEWGNPNEYKYYDYMLSYSPMD 664
Query: 651 NIQKDVLYPAVLVTSSF-NTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTD---IVEE 706
N++ YP ++V + R WE AKWV+++RE + + ILLN+ + +
Sbjct: 665 NVRAQE-YPNIMVQCGLHDPRVAYWEPAKWVSKLRECKTDNNE--ILLNIDMESGHFSAK 721
Query: 707 NRYLQCKESALETAFLIKMMES 728
+RY KESA++ AF+ K ++S
Sbjct: 722 DRYKFWKESAIQQAFVCKHLKS 743
>pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
pdb|2BKL|B Chain B, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 695
Score = 129 bits (324), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 120/225 (53%), Gaps = 4/225 (1%)
Query: 463 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLL 522
E Y EQ S DG VP+ +++ K++ P LL+G+G + ++ +RS + L
Sbjct: 413 EQYQVEQVFYASKDGTKVPMFVVHRKDLKRDGNAPTLLYGYGGFNVNMEANFRSSILPWL 472
Query: 523 DRGWVVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGY 582
D G V A A++R K WH GR KK N DF + A +L++++ + +LA +G
Sbjct: 473 DAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFDDFHAAAEYLVQQKYTQPKRLAIYGG 532
Query: 583 SAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHA 642
S GGLLV AA+ P+L+ AVV VP LD + Y + E+G +DF
Sbjct: 533 SNGGLLVGAAMTQRPELYGAVVCAVPLLD---MVRYHLFGSGRTWIPEYGTAEKPEDFKT 589
Query: 643 IRNYSPYDNIQKDVLYPAVLVTSS-FNTRFGVWEAAKWVARVRES 686
+ YSPY +++ DV YPA+L+ ++ + R A K+VA V+ S
Sbjct: 590 LHAYSPYHHVRPDVRYPALLMMAADHDDRVDPMHARKFVAAVQNS 634
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 100/204 (49%), Gaps = 9/204 (4%)
Query: 465 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDR 524
+ EQ PS DG VP+ I+ + + P LL+G+G + L + + + +D
Sbjct: 459 FRVEQVFYPSKDGTKVPMFIVR--RKDAKGPLPTLLYGYGGFNVALTPWFSAGFMTWIDS 516
Query: 525 GWVVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSA 584
G A A++R WH GRR KK N DFI+ +LI + H LA G S
Sbjct: 517 GGAFALANLRGGGEYGDAWHDAGRRDKKQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSN 576
Query: 585 GGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADY--EEFGYPGDIDDFHA 642
GGLL+ A N PDLF A V +D + A Y +++GYP D+
Sbjct: 577 GGLLIGAVTNQRPDLFAAASPAVGVMD-----MLRFDQFTAGRYWVDDYGYPEKEADWRV 631
Query: 643 IRNYSPYDNIQKDVLYPAVLVTSS 666
+R YSPY N++ V YPA+LVT++
Sbjct: 632 LRRYSPYHNVRSGVDYPAILVTTA 655
>pdb|3IUN|A Chain A, Appep_d622n Opened State
pdb|3IUQ|A Chain A, Appep_d622n+pp Closed State
pdb|3IUR|A Chain A, Appep_d266nx+h2h3 Opened State
Length = 693
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 97/205 (47%), Gaps = 4/205 (1%)
Query: 463 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLL 522
E Y EQ S DG VPL I Y K + NP +L+G+G + L + + + L
Sbjct: 421 EDYVSEQRFYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWL 480
Query: 523 DRGWVVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGY 582
D G V A A++R + WH G + K N DFI+ A +L + + +LA G
Sbjct: 481 DLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGG 540
Query: 583 SAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDD-FH 641
S GGLLV A + PDL R + V LD + A DY G D + F
Sbjct: 541 SNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHTFTAGTGWAYDY---GTSADSEAMFD 597
Query: 642 AIRNYSPYDNIQKDVLYPAVLVTSS 666
++ YSP N++ V YP+ +VT++
Sbjct: 598 YLKGYSPLHNVRPGVSYPSTMVTTA 622
>pdb|3MUN|A Chain A, Appep_pepclose Closed State
pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
Length = 693
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 97/205 (47%), Gaps = 4/205 (1%)
Query: 463 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLL 522
E Y EQ S DG VPL I Y K + NP +L+G+G + L + + + L
Sbjct: 421 EDYVSEQRFYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWL 480
Query: 523 DRGWVVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGY 582
D G V A A++R + WH G + K N DFI+ A +L + + +LA G
Sbjct: 481 DLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGG 540
Query: 583 SAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDD-FH 641
S GGLLV A + PDL R + V LD + A DY G D + F
Sbjct: 541 SNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHTFTAGTGWAYDY---GTSADSEAMFD 597
Query: 642 AIRNYSPYDNIQKDVLYPAVLVTSS 666
++ YSP N++ V YP+ +VT++
Sbjct: 598 YLKGYSPLHNVRPGVSYPSTMVTTA 622
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 109/222 (49%), Gaps = 6/222 (2%)
Query: 447 VNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAY 506
+ELK L++ SE Y EQ + S DG+ +P ++Y K + +NP LL +G +
Sbjct: 429 THELKIIRKALYSFDSENYVLEQKEATSFDGVKIPYFLVYKKGIKFDGKNPTLLEAYGGF 488
Query: 507 GELLDKRWRSELKS--LLDRGWVVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCAR 564
++++ + S +K+ + V A++R +WH + K+ + DF + +
Sbjct: 489 -QVINAPYFSRIKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSE 547
Query: 565 FLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLI 624
LI++ I L G S GGLLV+ A+ P+LF AV EVP LD + Y
Sbjct: 548 ELIKQNITSPEYLGIKGGSNGGLLVSVAMTQRPELFGAVACEVPILDM---IRYKEFGAG 604
Query: 625 AADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSS 666
+ E+G P +D I+ Y+P +N+ YP VL+T S
Sbjct: 605 HSWVTEYGDPEIPNDLLHIKKYAPLENLSLTQKYPTVLITDS 646
>pdb|3IUJ|A Chain A, Appep_wt2 Opened State
pdb|3IUL|A Chain A, Appep_wt1 Opened State
pdb|3IUM|A Chain A, Appep_wtx Opened State
Length = 693
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 95/205 (46%), Gaps = 4/205 (1%)
Query: 463 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLL 522
E Y EQ S DG VPL I Y K + NP +L+G+G + L + + + L
Sbjct: 421 EDYVSEQRFYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWL 480
Query: 523 DRGWVVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGY 582
D G V A A++R + WH G + K N DFI+ A +L + + +LA G
Sbjct: 481 DLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGG 540
Query: 583 SAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDID-DFH 641
S GGLLV A PDL R + V LD + A DY G D + F
Sbjct: 541 SNGGLLVGAVXTQRPDLXRVALPAVGVLDXLRYHTFTAGTGWAYDY---GTSADSEAXFD 597
Query: 642 AIRNYSPYDNIQKDVLYPAVLVTSS 666
++ YSP N++ V YP+ VT++
Sbjct: 598 YLKGYSPLHNVRPGVSYPSTXVTTA 622
>pdb|3IVM|A Chain A, Appep_wt+pp Closed State
Length = 693
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 95/205 (46%), Gaps = 4/205 (1%)
Query: 463 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLL 522
E Y EQ S DG VPL I Y K + NP +L+G+G + L + + + L
Sbjct: 421 EDYVSEQRFYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWL 480
Query: 523 DRGWVVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGY 582
D G V A A++R + WH G + K N DFI+ A +L + + +LA G
Sbjct: 481 DLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGG 540
Query: 583 SAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDID-DFH 641
S GGLLV A PDL R + V LD + A DY G D + F
Sbjct: 541 SNGGLLVGAVXTQRPDLXRVALPAVGVLDXLRYHTFTAGTGWAYDY---GTSADSEAXFD 597
Query: 642 AIRNYSPYDNIQKDVLYPAVLVTSS 666
++ YSP N++ V YP+ VT++
Sbjct: 598 YLKGYSPLHNVRPGVSYPSTXVTTA 622
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 111/245 (45%), Gaps = 11/245 (4%)
Query: 465 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR-SELKSLLD 523
Y Q PS DG +P+ I++ K + +P L+G+G + + + S L +
Sbjct: 435 YQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRH 494
Query: 524 RGWVVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYS 583
G V+A A++R + WH G K N DF A +LI++ +L G S
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 584 AGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAI 643
GGLLVA N PDLF V+ +V +D Y I DY G F +
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDY---GCSDSKQHFEWL 611
Query: 644 RNYSPYDNIQ----KDVLYPAV-LVTSSFNTRFGVWEAAKWVARVRESTIYDPKR--PIL 696
YSP N++ D+ YP++ L+T+ N R + K++A ++ K+ P+L
Sbjct: 612 IKYSPLHNVKLPEADDIQYPSMLLLTADHNDRVVPLHSLKFIATLQYIVGRSRKQNNPLL 671
Query: 697 LNLTT 701
+++ T
Sbjct: 672 IHVDT 676
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 122 GYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA-LCSKPQAVRVSNIAWAKDG 180
GYA+ E D ++ AY + +D+ T+ ++ L + V+ S +AW DG
Sbjct: 129 GYAFSE------DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 181 QALIY 185
+ + Y
Sbjct: 183 KGMFY 187
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 112/245 (45%), Gaps = 11/245 (4%)
Query: 465 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR-SELKSLLD 523
Y Q PS DG +P+ I++ K + +P L+G+G + + + S L +
Sbjct: 434 YQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRH 493
Query: 524 RGWVVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYS 583
G ++A A++R + WH G K N DF A +LI++ +L G S
Sbjct: 494 MGGILAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 553
Query: 584 AGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAI 643
GGLLVAA N PDLF V+ +V +D Y I DY G F +
Sbjct: 554 NGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDY---GCSDSKQHFEWL 610
Query: 644 RNYSPYDNIQ----KDVLYPAV-LVTSSFNTRFGVWEAAKWVARVRESTIYDPKR--PIL 696
YSP N++ D+ YP++ L+T+ + R + K++A ++ K+ P+L
Sbjct: 611 VKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLL 670
Query: 697 LNLTT 701
+++ T
Sbjct: 671 IHVDT 675
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 122 GYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA-LCSKPQAVRVSNIAWAKDG 180
GYA+ E D ++ AY + +D+ T+ ++ L + V+ S +AW DG
Sbjct: 128 GYAFSE------DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 181
Query: 181 QALIY 185
+ + Y
Sbjct: 182 KGMFY 186
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 111/245 (45%), Gaps = 11/245 (4%)
Query: 465 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR-SELKSLLD 523
Y Q PS DG +P+ I++ K + +P L+G+G + + + S L +
Sbjct: 435 YQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRH 494
Query: 524 RGWVVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYS 583
G V+A A++R + WH G K N DF A +LI++ +L G S
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 584 AGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAI 643
GGLLVA N PDLF V+ +V +D Y I DY G F +
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDY---GXSDSKQHFEWL 611
Query: 644 RNYSPYDNIQ----KDVLYPAV-LVTSSFNTRFGVWEAAKWVARVRESTIYDPKR--PIL 696
YSP N++ D+ YP++ L+T+ + R + K++A ++ K+ P+L
Sbjct: 612 IKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLL 671
Query: 697 LNLTT 701
+++ T
Sbjct: 672 IHVDT 676
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 122 GYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA-LCSKPQAVRVSNIAWAKDG 180
GYA+ E D ++ AY + +D+ T+ ++ L + V+ S +AW DG
Sbjct: 129 GYAFSE------DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSXMAWTHDG 182
Query: 181 QALIY 185
+ + Y
Sbjct: 183 KGMFY 187
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 111/245 (45%), Gaps = 11/245 (4%)
Query: 465 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR-SELKSLLD 523
Y Q PS DG +P+ I++ K + +P L+G+G + + + S L +
Sbjct: 435 YQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRH 494
Query: 524 RGWVVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYS 583
G V+A A++R + WH G K N DF A +LI++ +L G S
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 584 AGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAI 643
GGLLVA N PDLF V+ +V +D Y I DY G F +
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDY---GCSDSKQHFEWL 611
Query: 644 RNYSPYDNIQ----KDVLYPAV-LVTSSFNTRFGVWEAAKWVARVRESTIYDPKR--PIL 696
YSP N++ D+ YP++ L+T+ + R + K++A ++ K+ P+L
Sbjct: 612 IKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLL 671
Query: 697 LNLTT 701
+++ T
Sbjct: 672 IHVDT 676
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 122 GYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA-LCSKPQAVRVSNIAWAKDG 180
GYA+ E D ++ AY + +D+ T+ ++ L + V+ S +AW DG
Sbjct: 129 GYAFSE------DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 181 QALIY 185
+ + Y
Sbjct: 183 KGMFY 187
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 111/245 (45%), Gaps = 11/245 (4%)
Query: 465 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR-SELKSLLD 523
Y Q PS DG +P+ I++ K + +P L+G+G + + + S L +
Sbjct: 435 YQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRH 494
Query: 524 RGWVVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYS 583
G V+A A++R + WH G K N DF A +LI++ +L G S
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 584 AGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAI 643
GGLLVA N PDLF V+ +V +D Y I DY G F +
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDY---GCSDSKQHFEWL 611
Query: 644 RNYSPYDNIQ----KDVLYPAV-LVTSSFNTRFGVWEAAKWVARVRESTIYDPKR--PIL 696
YSP N++ D+ YP++ L+T+ + R + K++A ++ K+ P+L
Sbjct: 612 IKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLL 671
Query: 697 LNLTT 701
+++ T
Sbjct: 672 IHVDT 676
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 122 GYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA-LCSKPQAVRVSNIAWAKDG 180
GYA+ E D ++ AY + +D+ T+ ++ L + V+ S +AW DG
Sbjct: 129 GYAFSE------DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 181 QALIY 185
+ + Y
Sbjct: 183 KGMFY 187
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently
Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-4
Length = 710
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 111/245 (45%), Gaps = 11/245 (4%)
Query: 465 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR-SELKSLLD 523
Y Q PS DG +P+ I++ K + +P L+G+G + + + S L +
Sbjct: 435 YQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRH 494
Query: 524 RGWVVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYS 583
G V+A A++R + WH G K N DF A +LI++ +L G S
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 584 AGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAI 643
GGLLVA N PDLF V+ +V +D Y I DY G F +
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDY---GCSDSKQHFEWL 611
Query: 644 RNYSPYDNIQ----KDVLYPAV-LVTSSFNTRFGVWEAAKWVARVRESTIYDPKR--PIL 696
YSP N++ D+ YP++ L+T+ + R + K++A ++ K+ P+L
Sbjct: 612 IKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLL 671
Query: 697 LNLTT 701
+++ T
Sbjct: 672 IHVDT 676
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 122 GYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA-LCSKPQAVRVSNIAWAKDG 180
GYA+ E D ++ AY + +D+ T+ ++ L + V+ S +AW DG
Sbjct: 129 GYAFSE------DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 181 QALIY 185
+ + Y
Sbjct: 183 KGMFY 187
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t
Mutant
Length = 710
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 111/245 (45%), Gaps = 11/245 (4%)
Query: 465 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR-SELKSLLD 523
Y Q PS DG +P+ I++ K + +P L+G+G + + + S L +
Sbjct: 435 YQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRH 494
Query: 524 RGWVVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYS 583
G V+A A++R + WH G K N DF A +LI++ +L G S
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 584 AGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAI 643
GGLLVA N PDLF V+ +V +D Y I DY G F +
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDY---GCSDSKQHFEWL 611
Query: 644 RNYSPYDNIQ----KDVLYPAV-LVTSSFNTRFGVWEAAKWVARVRESTIYDPKR--PIL 696
YSP N++ D+ YP++ L+T+ + R + K++A ++ K+ P+L
Sbjct: 612 IKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLL 671
Query: 697 LNLTT 701
+++ T
Sbjct: 672 IHVDT 676
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 122 GYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA-LCSKPQAVRVSNIAWAKDG 180
GYA+ E D ++ AY + +D+ T+ ++ L + V+ S +AW DG
Sbjct: 129 GYAFSE------DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 181 QALIY 185
+ + Y
Sbjct: 183 KGMFY 187
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 111/245 (45%), Gaps = 11/245 (4%)
Query: 465 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR-SELKSLLD 523
Y Q PS DG +P+ I++ K + +P L+G+G + + + S L +
Sbjct: 435 YQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRH 494
Query: 524 RGWVVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYS 583
G V+A A++R + WH G K N DF A +LI++ +L G S
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 584 AGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAI 643
GGLLVA N PDLF V+ +V +D Y I DY G F +
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTCDY---GCSDSKQHFEWL 611
Query: 644 RNYSPYDNIQ----KDVLYPAV-LVTSSFNTRFGVWEAAKWVARVRESTIYDPKR--PIL 696
YSP N++ D+ YP++ L+T+ + R + K++A ++ K+ P+L
Sbjct: 612 IKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLL 671
Query: 697 LNLTT 701
+++ T
Sbjct: 672 IHVDT 676
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 122 GYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA-LCSKPQAVRVSNIAWAKDG 180
GYA+ E D ++ AY + +D+ T+ ++ L + V+ S +AW DG
Sbjct: 129 GYAFSE------DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 181 QALIY 185
+ + Y
Sbjct: 183 KGMFY 187
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 110/245 (44%), Gaps = 11/245 (4%)
Query: 465 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR-SELKSLLD 523
Y Q PS DG +P+ I++ K + +P L+G G + + + S L +
Sbjct: 435 YQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGFGGFNISITPNYSVSRLIFVRH 494
Query: 524 RGWVVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYS 583
G V+A A++R + WH G K N DF A +LI++ +L G S
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 584 AGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAI 643
GGLLVA N PDLF V+ +V +D Y I DY G F +
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDY---GCSDSKQHFEWL 611
Query: 644 RNYSPYDNIQ----KDVLYPAV-LVTSSFNTRFGVWEAAKWVARVRESTIYDPKR--PIL 696
YSP N++ D+ YP++ L+T+ + R + K++A ++ K+ P+L
Sbjct: 612 IKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLL 671
Query: 697 LNLTT 701
+++ T
Sbjct: 672 IHVDT 676
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 122 GYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA-LCSKPQAVRVSNIAWAKDG 180
GYA+ E D ++ AY + +D+ T+ ++ L + V+ S +AW DG
Sbjct: 129 GYAFSE------DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 181 QALIY 185
+ + Y
Sbjct: 183 KGMFY 187
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 110/245 (44%), Gaps = 11/245 (4%)
Query: 465 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR-SELKSLLD 523
Y Q PS DG +P+ I++ K + +P L+G+G + + + S L +
Sbjct: 435 YQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRH 494
Query: 524 RGWVVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYS 583
G V+A A++R + WH G K N DF A +LI++ +L G S
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 584 AGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAI 643
GGLLVA N PDLF V+ +V +D Y I DY G F +
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDY---GCSDSKQHFEWL 611
Query: 644 RNYSPYDNIQ----KDVLYPAV-LVTSSFNTRFGVWEAAKWVARVRESTIYDPKR--PIL 696
YSP N++ D+ YP++ L+T+ R + K++A ++ K+ P+L
Sbjct: 612 IKYSPLHNVKLPEADDIQYPSMLLLTADHADRVVPLHSLKFIATLQYIVGRSRKQNNPLL 671
Query: 697 LNLTT 701
+++ T
Sbjct: 672 IHVDT 676
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 122 GYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA-LCSKPQAVRVSNIAWAKDG 180
GYA+ E D ++ AY + +D+ T+ ++ L + V+ S +AW DG
Sbjct: 129 GYAFSE------DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 181 QALIY 185
+ + Y
Sbjct: 183 KGMFY 187
>pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Inhibitor
pdb|1E8N|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Peptide
pdb|1UOO|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Arg-Pro
pdb|1UOP|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Glu-Pro
pdb|1UOQ|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Glu-Phe-Ser-Pro
pdb|1H2Z|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 111/245 (45%), Gaps = 11/245 (4%)
Query: 465 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR-SELKSLLD 523
Y Q PS DG +P+ I++ K + +P L+G+G + + + S L +
Sbjct: 435 YQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRH 494
Query: 524 RGWVVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYS 583
G V+A A++R + WH G K N DF A +LI++ +L G +
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGA 554
Query: 584 AGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAI 643
GGLLVA N PDLF V+ +V +D Y I DY G F +
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDY---GCSDSKQHFEWL 611
Query: 644 RNYSPYDNIQ----KDVLYPAV-LVTSSFNTRFGVWEAAKWVARVRESTIYDPKR--PIL 696
YSP N++ D+ YP++ L+T+ + R + K++A ++ K+ P+L
Sbjct: 612 IKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLL 671
Query: 697 LNLTT 701
+++ T
Sbjct: 672 IHVDT 676
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 122 GYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA-LCSKPQAVRVSNIAWAKDG 180
GYA+ E D ++ AY + +D+ T+ ++ L + V+ S +AW DG
Sbjct: 129 GYAFSE------DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 181 QALIY 185
+ + Y
Sbjct: 183 KGMFY 187
>pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
pdb|1Z68|B Chain B, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
Length = 719
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 7/138 (5%)
Query: 476 DGISVPLTIIYSPKYKKENQNPGLLHGHG-----AYGELLDKRWRSELKSLLDRGWVVAF 530
D I++ +I P++ + + P L+ +G + + W S L S G V+A
Sbjct: 476 DEITLWYKMILPPQFDRSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLAS--KEGMVIAL 533
Query: 531 ADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVA 590
D R K + R + ++D I+ R IE + E ++A WG+S GG + +
Sbjct: 534 VDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSS 593
Query: 591 AAINCCPDLFRAVVLEVP 608
A+ LF+ + P
Sbjct: 594 LALASGTGLFKCGIAVAP 611
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 4/140 (2%)
Query: 472 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFA 531
V S DG VP ++ S + L+HG G + E D W + SL G+ V
Sbjct: 318 VESFDGSRVPTYVLESGRAPTPGPTVVLVHG-GPFAEDSDS-WDTFAASLAAAGFHVVMP 375
Query: 532 DVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAA 591
+ R ++W ++D + AR+ E + E + GYS GG +
Sbjct: 376 NYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASELYI--MGYSYGGYMTLC 433
Query: 592 AINCCPDLFRAVVLEVPFLD 611
A+ P LF+A V +D
Sbjct: 434 ALTMKPGLFKAGVAGASVVD 453
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 4/140 (2%)
Query: 472 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFA 531
V S DG VP ++ S + L+HG G + E D W + SL G+ V
Sbjct: 338 VESFDGSRVPTYVLESGRAPTPGPTVVLVHG-GPFAEDSDS-WDTFAASLAAAGFHVVMP 395
Query: 532 DVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAA 591
+ R ++W ++D + AR+ E + E + GYS GG +
Sbjct: 396 NYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASELYI--MGYSYGGYMTLC 453
Query: 592 AINCCPDLFRAVVLEVPFLD 611
A+ P LF+A V +D
Sbjct: 454 ALTMKPGLFKAGVAGASVVD 473
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 4/140 (2%)
Query: 472 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFA 531
V S DG VP ++ S + L+HG G + E D W + SL G+ V
Sbjct: 338 VESFDGSRVPTYVLESGRAPTPGPTVVLVHG-GPFAEDSDS-WDTFAASLAAAGFHVVMP 395
Query: 532 DVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAA 591
+ R ++W ++D + AR+ E + E + GYS GG +
Sbjct: 396 NYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASELYI--MGYSYGGYMTLC 453
Query: 592 AINCCPDLFRAVVLEVPFLD 611
A+ P LF+A V +D
Sbjct: 454 ALTMKPGLFKAGVAGASVVD 473
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 4/140 (2%)
Query: 472 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFA 531
V S DG VP ++ S + L+HG G + E D W + SL G+ V
Sbjct: 338 VESFDGSRVPTYVLESGRAPTPGPTVVLVHG-GPFAEDSDS-WDTFAASLAAAGFHVVMP 395
Query: 532 DVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAA 591
+ R ++W ++D + AR+ E + E + GYS GG +
Sbjct: 396 NYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASELYI--MGYSYGGYMTLC 453
Query: 592 AINCCPDLFRAVVLEVPFLD 611
A+ P LF+A V +D
Sbjct: 454 ALTMKPGLFKAGVAGASVVD 473
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 4/140 (2%)
Query: 472 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFA 531
V S DG VP ++ S + L+HG G + E D W + SL G+ V
Sbjct: 338 VESFDGSRVPTYVLESGRAPTPGPTVVLVHG-GPFAEDSDS-WDTFAASLAAAGFHVVMP 395
Query: 532 DVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAA 591
+ R ++W ++D + AR+ E + E + G+ Y GG +
Sbjct: 396 NYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASELYIMGYAY--GGYMTLC 453
Query: 592 AINCCPDLFRAVVLEVPFLD 611
A+ P LF+A V +D
Sbjct: 454 ALTMKPGLFKAGVAGASVVD 473
>pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORW|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|2BUA|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUC|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2AJ8|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJB|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJC|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJD|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
Length = 728
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 8/160 (5%)
Query: 471 DVPSHDGISVPLTIIYSPKYKKENQNPGLLHGH-GAYGELLDKRWRSELKSLL--DRGWV 527
DV + G +I P + K + P L+ + G + +D +R + L +
Sbjct: 477 DVINLHGTKFWYQMILPPHFDKSKKYPLLIEVYAGPCSQKVDTVFRLSWATYLASTENII 536
Query: 528 VAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGL 587
VA D R K H R ++D I R + V + ++A WG+S GG
Sbjct: 537 VASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEATRQFSKMGFVDDKRIAIWGWSYGGY 596
Query: 588 LVAAAINCCPDLFRAVVLEVP-----FLDATNTLLYPILP 622
+ + + +F+ + P + D+ T Y LP
Sbjct: 597 VTSMVLGAGSGVFKCGIAVAPVSKWEYYDSVYTERYMGLP 636
>pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1J2E|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1WCY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|1WCY|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|3VJM|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJM|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJK|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJK|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJL|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
pdb|3VJL|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
Length = 740
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 484 IIYSPKYKKENQNPGLLHGH-GAYGELLDKRWRSELKSLL--DRGWVVAFADVRXXXXXX 540
+I P + K + P LL + G + D +R + L +VA D R
Sbjct: 496 MILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQG 555
Query: 541 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 600
K H R ++D I AR + V ++A WG+S GG + + + +F
Sbjct: 556 DKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVF 615
Query: 601 RAVVLEVP-----FLDATNTLLYPILP 622
+ + P + D+ T Y LP
Sbjct: 616 KCGIAVAPVSRWEYYDSVYTERYMGLP 642
>pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3QBJ|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 484 IIYSPKYKKENQNPGLLHGH-GAYGELLDKRWRSELKSLL--DRGWVVAFADVRXXXXXX 540
+I P + K + P LL + G + D +R + L +VA D R
Sbjct: 498 MILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQG 557
Query: 541 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 600
K H R ++D I AR + V ++A WG+S GG + + + +F
Sbjct: 558 DKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVF 617
Query: 601 RAVVLEVP-----FLDATNTLLYPILP 622
+ + P + D+ T Y LP
Sbjct: 618 KCGIAVAPVSRWEYYDSVYTERYMGLP 644
>pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3NOX|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3SWW|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SWW|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3Q0T|A Chain A, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
pdb|3Q0T|B Chain B, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
Length = 753
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 484 IIYSPKYKKENQNPGLLHGH-GAYGELLDKRWRSELKSLL--DRGWVVAFADVRXXXXXX 540
+I P + K + P LL + G + D +R + L +VA D R
Sbjct: 492 MILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQG 551
Query: 541 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 600
K H R ++D I AR + V ++A WG+S GG + + + +F
Sbjct: 552 DKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVF 611
Query: 601 RAVVLEVP-----FLDATNTLLYPILP 622
+ + P + D+ T Y LP
Sbjct: 612 KCGIAVAPVSRWEYYDSVYTERYMGLP 638
>pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3G0B|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0C|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0D|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0G|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3O95|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O9V|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3OPM|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|4G1F|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
Length = 740
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 484 IIYSPKYKKENQNPGLLHGH-GAYGELLDKRWRSELKSLL--DRGWVVAFADVRXXXXXX 540
+I P + K + P LL + G + D +R + L +VA D R
Sbjct: 502 MILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQG 561
Query: 541 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 600
K H R ++D I AR + V ++A WG+S GG + + + +F
Sbjct: 562 DKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVF 621
Query: 601 RAVVLEVP-----FLDATNTLLYPILP 622
+ + P + D+ T Y LP
Sbjct: 622 KCGIAVAPVSRWEYYDSVYTERYMGLP 648
>pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|2QJR|B Chain B, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|3F8S|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3F8S|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 484 IIYSPKYKKENQNPGLLHGH-GAYGELLDKRWRSELKSLL--DRGWVVAFADVRXXXXXX 540
+I P + K + P LL + G + D +R + L +VA D R
Sbjct: 498 MILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQG 557
Query: 541 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 600
K H R ++D I AR + V ++A WG+S GG + + + +F
Sbjct: 558 DKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVF 617
Query: 601 RAVVLEVP-----FLDATNTLLYPILP 622
+ + P + D+ T Y LP
Sbjct: 618 KCGIAVAPVSRWEYYDSVYTERYMGLP 644
>pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
pdb|2BGR|B Chain B, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
Length = 738
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 484 IIYSPKYKKENQNPGLLHGH-GAYGELLDKRWRSELKSLL--DRGWVVAFADVRXXXXXX 540
+I P + K + P LL + G + D +R + L +VA D R
Sbjct: 500 MILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQG 559
Query: 541 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 600
K H R ++D I AR + V ++A WG+S GG + + + +F
Sbjct: 560 DKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVF 619
Query: 601 RAVVLEVP-----FLDATNTLLYPILP 622
+ + P + D+ T Y LP
Sbjct: 620 KCGIAVAPVSRWEYYDSVYTERYMGLP 646
>pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
pdb|2JID|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
Length = 736
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 484 IIYSPKYKKENQNPGLLHGH-GAYGELLDKRWRSELKSLL--DRGWVVAFADVRXXXXXX 540
+I P + K + P LL + G + D +R + L +VA D R
Sbjct: 498 MILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQG 557
Query: 541 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 600
K H R ++D I AR + V ++A WG+S GG + + + +F
Sbjct: 558 DKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVF 617
Query: 601 RAVVLEVP-----FLDATNTLLYPILP 622
+ + P + D+ T Y LP
Sbjct: 618 KCGIAVAPVSRWEYYDSVYTERYMGLP 644
>pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
pdb|1PFQ|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
Length = 731
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 484 IIYSPKYKKENQNPGLLHGH-GAYGELLDKRWRSELKSLL--DRGWVVAFADVRXXXXXX 540
+I P + K + P LL + G + D +R + L +VA D R
Sbjct: 493 MILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQG 552
Query: 541 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 600
K H R ++D I AR + V ++A WG+S GG + + + +F
Sbjct: 553 DKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVF 612
Query: 601 RAVVLEVP-----FLDATNTLLYPILP 622
+ + P + D+ T Y LP
Sbjct: 613 KCGIAVAPVSRWEYYDSVYTERYMGLP 639
>pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
Length = 739
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 484 IIYSPKYKKENQNPGLLHGH-GAYGELLDKRWRSELKSLL--DRGWVVAFADVRXXXXXX 540
+I P + K + P LL + G + D +R + L +VA D R
Sbjct: 501 MILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQG 560
Query: 541 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 600
K H R ++D I AR + V ++A WG+S GG + + + +F
Sbjct: 561 DKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVF 620
Query: 601 RAVVLEVP-----FLDATNTLLYPILP 622
+ + P + D+ T Y LP
Sbjct: 621 KCGIAVAPVSRWEYYDSVYTERYMGLP 647
>pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4
pdb|2ONC|B Chain B, Crystal Structure Of Human Dpp-4
pdb|2ONC|C Chain C, Crystal Structure Of Human Dpp-4
pdb|2ONC|D Chain D, Crystal Structure Of Human Dpp-4
Length = 731
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 484 IIYSPKYKKENQNPGLLHGH-GAYGELLDKRWRSELKSLL--DRGWVVAFADVRXXXXXX 540
+I P + K + P LL + G + D +R + L +VA D R
Sbjct: 493 MILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQG 552
Query: 541 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 600
K H R ++D I AR + V ++A WG+S GG + + + +F
Sbjct: 553 DKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVF 612
Query: 601 RAVVLEVP-----FLDATNTLLYPILP 622
+ + P + D+ T Y LP
Sbjct: 613 KCGIAVAPVSRWEYYDSVYTERYMGLP 639
>pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
pdb|3Q8W|B Chain B, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
Length = 732
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 484 IIYSPKYKKENQNPGLLHGH-GAYGELLDKRWRSELKSLL--DRGWVVAFADVRXXXXXX 540
+I P + K + P LL + G + D +R + L +VA D R
Sbjct: 490 MILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQG 549
Query: 541 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 600
K H R ++D I AR + V ++A WG+S GG + + + +F
Sbjct: 550 DKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVF 609
Query: 601 RAVVLEVP-----FLDATNTLLYPILP 622
+ + P + D+ T Y LP
Sbjct: 610 KCGIAVAPVSRWEYYDSVYTERYMGLP 636
>pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor
Length = 729
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 484 IIYSPKYKKENQNPGLLHGH-GAYGELLDKRWRSELKSLL--DRGWVVAFADVRXXXXXX 540
+I P + K + P LL + G + D +R + L +VA D R
Sbjct: 491 MILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQG 550
Query: 541 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 600
K H R ++D I AR + V ++A WG+S GG + + + +F
Sbjct: 551 DKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVF 610
Query: 601 RAVVLEVP-----FLDATNTLLYPILP 622
+ + P + D+ T Y LP
Sbjct: 611 KCGIAVAPVSRWEYYDSVYTERYMGLP 637
>pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5P|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5T|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G5T|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G63|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2I03|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2OQV|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2OQV|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2I78|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2OAG|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
Length = 726
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 484 IIYSPKYKKENQNPGLLHGH-GAYGELLDKRWRSELKSLL--DRGWVVAFADVRXXXXXX 540
+I P + K + P LL + G + D +R + L +VA D R
Sbjct: 490 MILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQG 549
Query: 541 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 600
K H R ++D I AR + V ++A WG+S GG + + + +F
Sbjct: 550 DKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVF 609
Query: 601 RAVVLEVP-----FLDATNTLLYPILP 622
+ + P + D+ T Y LP
Sbjct: 610 KCGIAVAPVSRWEYYDSVYTERYMGLP 636
>pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|1X70|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|2FJP|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2FJP|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2HHA|A Chain A, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2HHA|B Chain B, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2IIT|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIT|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIV|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2IIV|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2OPH|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2OPH|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2P8S|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2P8S|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2QOE|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|2QOE|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|3C43|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C43|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C45|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3C45|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3D4L|A Chain A, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|3D4L|B Chain B, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|2QKY|A Chain A, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|B Chain B, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|C Chain C, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|D Chain D, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|3HAB|A Chain A, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAB|B Chain B, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAC|A Chain A, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
pdb|3HAC|B Chain B, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
Length = 728
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 484 IIYSPKYKKENQNPGLLHGH-GAYGELLDKRWRSELKSLL--DRGWVVAFADVRXXXXXX 540
+I P + K + P LL + G + D +R + L +VA D R
Sbjct: 490 MILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQG 549
Query: 541 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 600
K H R ++D I AR + V ++A WG+S GG + + + +F
Sbjct: 550 DKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVF 609
Query: 601 RAVVLEVP-----FLDATNTLLYPILP 622
+ + P + D+ T Y LP
Sbjct: 610 KCGIAVAPVSRWEYYDSVYTERYMGLP 636
>pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1N1M|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1NU6|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU6|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU8|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1NU8|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1TK3|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TK3|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TKR|A Chain A, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1TKR|B Chain B, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1W1I|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1RWQ|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|1RWQ|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|2BGN|A Chain A, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|B Chain B, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|C Chain C, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|D Chain D, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2AJL|I Chain I, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2AJL|J Chain J, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2BUB|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2BUB|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2OGZ|A Chain A, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OGZ|B Chain B, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OQI|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|C Chain C, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|D Chain D, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OLE|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|2OLE|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|3BJM|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3BJM|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3EIO|A Chain A, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3EIO|B Chain B, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3H0C|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3H0C|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3KWF|A Chain A, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3KWF|B Chain B, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3OC0|A Chain A, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3OC0|B Chain B, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|A Chain A, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|B Chain B, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|4DSA|A Chain A, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSA|B Chain B, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSZ|A Chain A, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DSZ|B Chain B, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DTC|A Chain A, Crystal Structure Of Dpp-iv With Compound C5
pdb|4DTC|B Chain B, Crystal Structure Of Dpp-iv With Compound C5
Length = 728
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 484 IIYSPKYKKENQNPGLLHGH-GAYGELLDKRWRSELKSLL--DRGWVVAFADVRXXXXXX 540
+I P + K + P LL + G + D +R + L +VA D R
Sbjct: 490 MILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQG 549
Query: 541 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 600
K H R ++D I AR + V ++A WG+S GG + + + +F
Sbjct: 550 DKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVF 609
Query: 601 RAVVLEVP-----FLDATNTLLYPILP 622
+ + P + D+ T Y LP
Sbjct: 610 KCGIAVAPVSRWEYYDSVYTERYMGLP 636
>pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
pdb|2RGU|B Chain B, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
Length = 734
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 484 IIYSPKYKKENQNPGLLHGH-GAYGELLDKRWRSELKSLL--DRGWVVAFADVRXXXXXX 540
+I P + K + P LL + G + D +R + L +VA D R
Sbjct: 490 MILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQG 549
Query: 541 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 600
K H R ++D I AR + V ++A WG+S GG + + + +F
Sbjct: 550 DKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVF 609
Query: 601 RAVVLEVP-----FLDATNTLLYPILP 622
+ + P + D+ T Y LP
Sbjct: 610 KCGIAVAPVSRWEYYDSVYTERYMGLP 636
>pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QT9|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
Length = 766
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 484 IIYSPKYKKENQNPGLLHGH-GAYGELLDKRWRSELKSLL--DRGWVVAFADVRXXXXXX 540
+I P + K + P LL + G + D +R + L +VA D R
Sbjct: 528 MILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQG 587
Query: 541 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 600
K H R ++D I AR + V ++A WG+S GG + + + +F
Sbjct: 588 DKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVF 647
Query: 601 RAVVLEVP-----FLDATNTLLYPILP 622
+ + P + D+ T Y LP
Sbjct: 648 KCGIAVAPVSRWEYYDSVYTERYMGLP 674
>pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
pdb|4A5S|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
Length = 740
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 484 IIYSPKYKKENQNPGLLHGH-GAYGELLDKRWRSELKSLL--DRGWVVAFADVRXXXXXX 540
+I P + K + P LL + G + D +R + L +VA D R
Sbjct: 490 MILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQG 549
Query: 541 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 600
K H R ++D I AR + V ++A WG+S GG + + + +F
Sbjct: 550 DKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVF 609
Query: 601 RAVVLEVP-----FLDATNTLLYPILP 622
+ + P + D+ T Y LP
Sbjct: 610 KCGIAVAPVSRWEYYDSVYTERYMGLP 636
>pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution
Length = 733
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 484 IIYSPKYKKENQNPGLLHGH-GAYGELLDKRWRSELKSLL--DRGWVVAFADVRXXXXXX 540
+I P + K + P LL + G + D +R + L +VA D R
Sbjct: 495 MILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQG 554
Query: 541 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 600
K H R ++D I AR + V ++A WG+S GG + + + +F
Sbjct: 555 DKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVF 614
Query: 601 RAVVLEVP-----FLDATNTLLYPILP 622
+ + P + D+ T Y LP
Sbjct: 615 KCGIAVAPVSRWEYYDSVYTERYMGLP 641
>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
With An Inhibitor
Length = 706
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 4/112 (3%)
Query: 504 GAYGELLDKRWRSELKS----LLDRGWVVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDF 559
G + +L+ K WRS + + +G+ V D R + R + D
Sbjct: 494 GPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQ 553
Query: 560 ISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD 611
+ FL + V ++ G+S GG + + D+F+ V P +D
Sbjct: 554 MCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVID 605
>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
From Porphyromonas Gingivalis
pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
Inhibitor
Length = 706
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 4/112 (3%)
Query: 504 GAYGELLDKRWRSELKS----LLDRGWVVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDF 559
G + +L+ K WRS + + +G+ V D R + R + D
Sbjct: 494 GPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQ 553
Query: 560 ISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD 611
+ FL + V ++ G+S GG + + D+F+ V P +D
Sbjct: 554 MCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVID 605
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 4/140 (2%)
Query: 472 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFA 531
V S DG VP ++ S + L+ G G + E D W + SL G+ V
Sbjct: 338 VESFDGSRVPTYVLESGRAPTPGPTVVLVAG-GPFAEDSDS-WDTFAASLAAAGFHVVMP 395
Query: 532 DVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAA 591
+ R ++W ++D + AR+ E + E + GYS GG +
Sbjct: 396 NYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASELYI--MGYSYGGYMTLC 453
Query: 592 AINCCPDLFRAVVLEVPFLD 611
A+ P LF+A V +D
Sbjct: 454 ALTMKPGLFKAGVAGASVVD 473
>pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
pdb|1U8E|B Chain B, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
Length = 728
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 527 VVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGG 586
+VA D R K H R ++D I AR + V ++A WG+S GG
Sbjct: 536 IVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGG 595
Query: 587 LLVAAAINCCPDLFRAVVLEVP-----FLDATNTLLYPILP 622
+ + + +F+ + P + D+ T Y LP
Sbjct: 596 YVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLP 636
>pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat
pdb|2GBC|B Chain B, Native Dpp-Iv (Cd26) From Rat
pdb|2GBF|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBF|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBG|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBG|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBI|A Chain A, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2GBI|B Chain B, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2I3Z|A Chain A, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2I3Z|B Chain B, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2OAE|A Chain A, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|2OAE|B Chain B, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|4FFV|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 730
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 8/147 (5%)
Query: 484 IIYSPKYKKENQNPGLLHGH-GAYGELLDKRWRSELKSLL--DRGWVVAFADVRXXXXXX 540
+I P + K + P L+ + G + D +R + L +VA D R
Sbjct: 492 MILPPHFDKSKKYPLLIDVYAGPCSQKADAAFRLNWATYLASTENIIVASFDGRGSGYQG 551
Query: 541 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 600
K H + ++D I AR ++ V ++A WG+S GG + + + +F
Sbjct: 552 DKIMHAINKRLGTLEVEDQIEAARQFLKMGFVDSKRVAIWGWSYGGYVTSMVLGSGSGVF 611
Query: 601 RAVVLEVP-----FLDATNTLLYPILP 622
+ + P + D+ T Y LP
Sbjct: 612 KCGIAVAPVSRWEYYDSVYTERYMGLP 638
>pdb|2DDR|A Chain A, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Calcium Ion
pdb|2DDR|B Chain B, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Calcium Ion
pdb|2DDR|C Chain C, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Calcium Ion
pdb|2DDR|D Chain D, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Calcium Ion
pdb|2DDS|A Chain A, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Cobalt Ion
pdb|2DDS|B Chain B, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Cobalt Ion
pdb|2DDS|C Chain C, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Cobalt Ion
pdb|2DDS|D Chain D, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Cobalt Ion
pdb|2DDT|A Chain A, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Magnesium Ion
pdb|2DDT|B Chain B, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Magnesium Ion
Length = 306
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/71 (18%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 26 TPRDSNLSSSPRWPLAWLLSFPLLPSAGAPGDLHHRRLYYRRVEEGKQYLVLCRRLVSLN 85
TP D ++ +WP+A + + G P +L ++ Y ++++ +++ + +
Sbjct: 97 TPEDGGVAIVSKWPIAEKIQYVFAKGCG-PDNLSNKGFVYTKIKKNDRFVHVIGTHLQAE 155
Query: 86 EEFISHKSPAA 96
+ SPA+
Sbjct: 156 DSMCGKTSPAS 166
>pdb|2UYR|X Chain X, Crystal Structure Of Bacillus Cereus Sphingomyelinase
Mutant :n57a
Length = 306
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/71 (18%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 26 TPRDSNLSSSPRWPLAWLLSFPLLPSAGAPGDLHHRRLYYRRVEEGKQYLVLCRRLVSLN 85
TP D ++ +WP+A + + G P +L ++ Y ++++ +++ + +
Sbjct: 97 TPEDGGVAIVSKWPIAEKIQYVFAKGCG-PDNLSNKGFVYTKIKKNDRFVHVIGTHLQAE 155
Query: 86 EEFISHKSPAA 96
+ SPA+
Sbjct: 156 DSMCGKTSPAS 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,274,841
Number of Sequences: 62578
Number of extensions: 1024610
Number of successful extensions: 2335
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2233
Number of HSP's gapped (non-prelim): 86
length of query: 728
length of database: 14,973,337
effective HSP length: 106
effective length of query: 622
effective length of database: 8,340,069
effective search space: 5187522918
effective search space used: 5187522918
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)