Query 004839
Match_columns 728
No_of_seqs 446 out of 3990
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 13:47:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1770 PtrB Protease II [Amin 100.0 3E-101 6E-106 816.7 62.9 611 40-727 65-680 (682)
2 PRK10115 protease 2; Provision 100.0 5.8E-87 1.2E-91 763.2 74.9 615 37-728 58-678 (686)
3 KOG2237 Predicted serine prote 100.0 2.1E-81 4.7E-86 658.2 42.6 635 32-728 54-708 (712)
4 COG1505 Serine proteases of th 100.0 1.2E-59 2.6E-64 492.7 43.7 576 51-727 52-648 (648)
5 COG1506 DAP2 Dipeptidyl aminop 100.0 2.5E-46 5.5E-51 426.6 50.7 526 125-727 61-618 (620)
6 PF02897 Peptidase_S9_N: Proly 100.0 3.8E-38 8.2E-43 346.7 40.5 344 37-418 55-414 (414)
7 KOG2281 Dipeptidyl aminopeptid 100.0 1.1E-33 2.4E-38 296.3 32.9 298 384-724 559-866 (867)
8 KOG2100 Dipeptidyl aminopeptid 100.0 5.3E-29 1.1E-33 286.0 49.1 238 476-727 506-749 (755)
9 PF00326 Peptidase_S9: Prolyl 100.0 2.5E-32 5.4E-37 272.2 14.9 210 512-727 1-211 (213)
10 PRK10566 esterase; Provisional 99.9 3.8E-20 8.3E-25 189.2 21.4 229 479-726 11-249 (249)
11 PRK13604 luxD acyl transferase 99.8 9E-20 1.9E-24 185.3 21.9 223 467-707 9-247 (307)
12 PRK05077 frsA fermentation/res 99.8 1.1E-18 2.5E-23 189.7 25.0 241 464-726 165-413 (414)
13 PLN02298 hydrolase, alpha/beta 99.8 3.6E-18 7.8E-23 182.2 25.3 252 464-727 29-319 (330)
14 COG3458 Acetyl esterase (deace 99.8 8.3E-19 1.8E-23 168.3 16.4 230 462-707 51-303 (321)
15 PF05448 AXE1: Acetyl xylan es 99.8 9.8E-19 2.1E-23 182.3 18.1 247 462-725 51-320 (320)
16 PLN02442 S-formylglutathione h 99.8 4.5E-18 9.8E-23 176.3 22.5 247 465-726 16-281 (283)
17 TIGR02821 fghA_ester_D S-formy 99.8 2.3E-17 5.1E-22 170.7 23.7 242 465-726 11-275 (275)
18 COG1647 Esterase/lipase [Gener 99.8 3.6E-18 7.7E-23 159.9 12.8 207 496-723 15-242 (243)
19 PRK05371 x-prolyl-dipeptidyl a 99.8 6.1E-17 1.3E-21 187.4 25.3 254 462-726 165-520 (767)
20 PLN02385 hydrolase; alpha/beta 99.8 7.2E-17 1.6E-21 173.4 24.0 250 464-726 58-346 (349)
21 PHA02857 monoglyceride lipase; 99.7 1.9E-16 4.2E-21 164.4 22.7 237 472-726 5-274 (276)
22 COG0412 Dienelactone hydrolase 99.7 2.9E-16 6.2E-21 157.2 22.4 215 468-727 3-235 (236)
23 PRK10162 acetyl esterase; Prov 99.7 6.7E-16 1.5E-20 162.9 25.9 231 465-727 55-317 (318)
24 PF01738 DLH: Dienelactone hyd 99.7 2.6E-17 5.7E-22 164.5 14.1 204 480-726 1-218 (218)
25 PRK10749 lysophospholipase L2; 99.7 1E-15 2.2E-20 162.9 26.5 248 467-725 30-329 (330)
26 TIGR01840 esterase_phb esteras 99.7 1.6E-16 3.6E-21 157.8 17.2 191 483-686 2-197 (212)
27 PRK04792 tolB translocation pr 99.7 5.4E-15 1.2E-19 163.3 29.5 262 39-349 161-425 (448)
28 PRK05137 tolB translocation pr 99.7 5.5E-15 1.2E-19 163.5 28.6 262 39-351 144-414 (435)
29 KOG1455 Lysophospholipase [Lip 99.7 2.3E-15 4.9E-20 148.5 22.4 245 465-725 25-312 (313)
30 KOG1552 Predicted alpha/beta h 99.7 1.3E-15 2.8E-20 147.4 19.2 211 466-716 34-246 (258)
31 PRK01029 tolB translocation pr 99.7 7.6E-15 1.6E-19 160.9 27.7 272 34-351 120-405 (428)
32 PLN02652 hydrolase; alpha/beta 99.7 5.2E-15 1.1E-19 159.8 25.5 245 466-727 109-389 (395)
33 PRK04043 tolB translocation pr 99.7 2.9E-14 6.2E-19 155.2 27.1 265 39-350 133-401 (419)
34 TIGR02800 propeller_TolB tol-p 99.7 3.9E-14 8.5E-19 156.4 28.6 263 38-349 133-397 (417)
35 PRK00178 tolB translocation pr 99.7 5.8E-14 1.2E-18 155.5 29.2 205 126-350 201-407 (430)
36 PRK03629 tolB translocation pr 99.7 7.8E-14 1.7E-18 153.5 29.8 263 39-350 142-407 (429)
37 COG2267 PldB Lysophospholipase 99.7 1.5E-14 3.1E-19 150.3 22.4 241 467-726 9-295 (298)
38 PF02129 Peptidase_S15: X-Pro 99.6 1.3E-15 2.8E-20 157.4 14.4 215 476-704 1-271 (272)
39 PRK04043 tolB translocation pr 99.6 1.3E-13 2.8E-18 150.1 30.1 246 136-416 155-408 (419)
40 PRK05137 tolB translocation pr 99.6 1.2E-13 2.6E-18 152.7 30.1 250 135-416 165-420 (435)
41 PRK01029 tolB translocation pr 99.6 1.3E-13 2.9E-18 151.1 29.1 258 128-417 141-412 (428)
42 PRK02889 tolB translocation pr 99.6 1.1E-13 2.5E-18 152.3 28.4 204 126-349 198-403 (427)
43 PRK04922 tolB translocation pr 99.6 1.3E-13 2.8E-18 152.4 28.4 264 38-350 145-412 (433)
44 PRK11460 putative hydrolase; P 99.6 3.2E-14 7E-19 143.0 20.3 185 494-726 14-209 (232)
45 TIGR00976 /NonD putative hydro 99.6 1.8E-14 3.9E-19 163.6 19.9 134 472-615 1-137 (550)
46 COG0657 Aes Esterase/lipase [L 99.6 2.9E-14 6.2E-19 150.7 18.1 228 473-724 57-309 (312)
47 PRK04792 tolB translocation pr 99.6 2.4E-13 5.2E-18 150.3 25.5 199 57-301 226-425 (448)
48 PRK02889 tolB translocation pr 99.6 3.5E-13 7.6E-18 148.5 25.5 198 58-301 205-403 (427)
49 PRK03629 tolB translocation pr 99.6 1.4E-12 3E-17 143.6 30.0 248 136-416 164-414 (429)
50 PF10503 Esterase_phd: Esteras 99.6 6.7E-14 1.5E-18 137.0 17.2 192 481-686 2-198 (220)
51 KOG4391 Predicted alpha/beta h 99.6 7.5E-14 1.6E-18 129.6 15.9 231 463-724 50-281 (300)
52 PRK04922 tolB translocation pr 99.6 4.5E-13 9.9E-18 148.0 25.4 198 58-301 213-411 (433)
53 PF06500 DUF1100: Alpha/beta h 99.6 1.1E-13 2.4E-18 145.1 18.3 240 463-726 161-410 (411)
54 PRK00178 tolB translocation pr 99.6 2E-12 4.3E-17 143.2 29.4 258 125-416 153-414 (430)
55 TIGR01607 PST-A Plasmodium sub 99.6 1.7E-13 3.7E-18 145.6 19.9 237 472-723 2-331 (332)
56 PRK10985 putative hydrolase; P 99.5 3.5E-13 7.6E-18 143.1 20.8 244 466-726 30-321 (324)
57 PRK01742 tolB translocation pr 99.5 2.4E-12 5.2E-17 142.0 27.6 258 37-349 145-404 (429)
58 KOG1515 Arylacetamide deacetyl 99.5 5.7E-13 1.2E-17 138.2 20.5 240 465-725 61-335 (336)
59 PF12695 Abhydrolase_5: Alpha/ 99.5 1.6E-13 3.5E-18 127.4 14.7 145 498-704 1-145 (145)
60 PLN02511 hydrolase 99.5 3.6E-13 7.7E-18 146.1 19.3 228 465-706 69-341 (388)
61 TIGR03100 hydr1_PEP hydrolase, 99.5 7.9E-13 1.7E-17 136.8 20.2 236 469-724 4-274 (274)
62 PRK00870 haloalkane dehalogena 99.5 1.6E-12 3.5E-17 136.8 22.5 129 467-609 21-149 (302)
63 TIGR03343 biphenyl_bphD 2-hydr 99.5 6.7E-13 1.4E-17 138.2 17.4 207 496-723 30-281 (282)
64 TIGR03611 RutD pyrimidine util 99.5 8.3E-13 1.8E-17 134.8 16.6 207 495-723 12-256 (257)
65 PF12715 Abhydrolase_7: Abhydr 99.5 1.4E-13 3.1E-18 141.6 9.7 143 462-608 83-258 (390)
66 PLN00021 chlorophyllase 99.5 7.1E-12 1.5E-16 130.8 21.7 183 477-705 36-241 (313)
67 PF07859 Abhydrolase_3: alpha/ 99.5 1.1E-13 2.3E-18 137.7 7.3 186 499-705 1-209 (211)
68 PF02230 Abhydrolase_2: Phosph 99.4 3.5E-12 7.6E-17 127.1 17.5 188 494-726 12-216 (216)
69 TIGR02800 propeller_TolB tol-p 99.4 9.4E-11 2E-15 129.4 29.4 251 132-415 152-404 (417)
70 TIGR03056 bchO_mg_che_rel puta 99.4 1.7E-11 3.6E-16 127.1 22.1 192 496-707 28-263 (278)
71 PRK11071 esterase YqiA; Provis 99.4 5.8E-12 1.3E-16 122.4 17.1 183 497-722 2-188 (190)
72 COG0823 TolB Periplasmic compo 99.4 1.2E-11 2.6E-16 133.7 21.3 163 125-301 239-402 (425)
73 PLN02824 hydrolase, alpha/beta 99.4 8.3E-12 1.8E-16 130.9 19.2 109 496-610 29-137 (294)
74 PLN02965 Probable pheophorbida 99.4 2.2E-11 4.9E-16 124.8 21.6 101 498-609 5-106 (255)
75 COG2945 Predicted hydrolase of 99.4 6.9E-12 1.5E-16 115.4 15.1 197 468-722 5-204 (210)
76 COG0823 TolB Periplasmic compo 99.4 4E-11 8.7E-16 129.7 23.4 207 125-349 194-402 (425)
77 PRK01742 tolB translocation pr 99.4 1.6E-10 3.4E-15 127.7 28.5 242 135-416 168-412 (429)
78 TIGR02240 PHA_depoly_arom poly 99.4 1.8E-11 3.9E-16 127.1 19.8 221 475-724 9-265 (276)
79 TIGR02427 protocat_pcaD 3-oxoa 99.4 4E-12 8.6E-17 128.9 14.4 192 495-707 12-236 (251)
80 TIGR01250 pro_imino_pep_2 prol 99.4 3.2E-11 7E-16 125.1 21.1 108 496-611 25-132 (288)
81 PRK03592 haloalkane dehalogena 99.4 5.7E-11 1.2E-15 124.6 23.0 113 476-609 15-127 (295)
82 TIGR01249 pro_imino_pep_1 prol 99.4 2.1E-11 4.6E-16 128.5 19.4 123 471-610 8-130 (306)
83 COG3509 LpqC Poly(3-hydroxybut 99.4 3.1E-11 6.6E-16 119.0 18.3 224 476-725 43-307 (312)
84 PF00930 DPPIV_N: Dipeptidyl p 99.4 2E-10 4.3E-15 123.4 26.4 242 126-400 45-353 (353)
85 PLN02872 triacylglycerol lipas 99.4 1.4E-11 3.1E-16 132.5 16.9 145 462-610 39-197 (395)
86 TIGR03101 hydr2_PEP hydrolase, 99.4 1.6E-10 3.4E-15 117.5 23.4 207 470-689 3-234 (266)
87 PRK10673 acyl-CoA esterase; Pr 99.4 3E-11 6.6E-16 123.7 18.3 207 494-724 14-254 (255)
88 TIGR03695 menH_SHCHC 2-succiny 99.4 2.6E-11 5.7E-16 122.6 17.5 104 497-611 2-106 (251)
89 PF12697 Abhydrolase_6: Alpha/ 99.3 2E-12 4.3E-17 128.8 8.8 188 499-705 1-217 (228)
90 PLN03087 BODYGUARD 1 domain co 99.3 8.6E-11 1.9E-15 128.8 21.8 125 472-610 180-309 (481)
91 PRK03204 haloalkane dehalogena 99.3 9.7E-11 2.1E-15 122.1 21.0 102 496-609 34-135 (286)
92 COG4099 Predicted peptidase [G 99.3 1.6E-11 3.6E-16 119.6 13.7 169 475-688 169-346 (387)
93 COG0429 Predicted hydrolase of 99.3 1.4E-10 3.1E-15 116.5 20.8 234 471-726 53-341 (345)
94 PLN02211 methyl indole-3-aceta 99.3 1E-10 2.2E-15 120.9 19.9 106 494-609 16-121 (273)
95 TIGR01836 PHA_synth_III_C poly 99.3 5.4E-11 1.2E-15 127.8 17.9 108 495-613 62-174 (350)
96 TIGR01738 bioH putative pimelo 99.3 4E-11 8.8E-16 121.0 15.9 185 497-707 5-231 (245)
97 PLN02679 hydrolase, alpha/beta 99.3 1.6E-10 3.5E-15 124.5 20.9 101 497-609 89-190 (360)
98 PLN02894 hydrolase, alpha/beta 99.3 2.3E-10 4.9E-15 124.8 22.0 126 471-609 83-210 (402)
99 COG2936 Predicted acyl esteras 99.3 4.8E-11 1E-15 129.5 16.4 141 464-613 16-162 (563)
100 KOG4178 Soluble epoxide hydrol 99.3 7E-10 1.5E-14 111.9 22.8 104 494-608 42-146 (322)
101 PRK06489 hypothetical protein; 99.2 1.3E-10 2.8E-15 125.4 16.7 109 496-609 69-188 (360)
102 KOG1838 Alpha/beta hydrolase [ 99.2 7.5E-10 1.6E-14 115.6 21.4 198 466-674 92-339 (409)
103 PRK10349 carboxylesterase BioH 99.2 2.6E-10 5.6E-15 117.0 17.5 190 497-712 14-245 (256)
104 PRK14875 acetoin dehydrogenase 99.2 1.8E-10 4E-15 125.0 16.3 102 495-609 130-231 (371)
105 PF08840 BAAT_C: BAAT / Acyl-C 99.2 7.2E-11 1.6E-15 116.7 11.8 168 557-727 4-212 (213)
106 PLN02578 hydrolase 99.2 6E-10 1.3E-14 119.9 19.3 100 497-609 87-186 (354)
107 KOG4667 Predicted esterase [Li 99.2 5.6E-10 1.2E-14 104.3 15.9 227 466-715 9-250 (269)
108 TIGR01392 homoserO_Ac_trn homo 99.2 7.5E-10 1.6E-14 119.1 19.4 113 496-610 31-162 (351)
109 COG0400 Predicted esterase [Ge 99.2 8.8E-10 1.9E-14 106.9 16.5 185 494-726 16-206 (207)
110 KOG3101 Esterase D [General fu 99.2 3.1E-10 6.8E-15 105.3 12.4 209 478-704 26-261 (283)
111 PRK07581 hypothetical protein; 99.2 3.6E-10 7.8E-15 121.1 14.8 110 495-609 40-158 (339)
112 PRK00175 metX homoserine O-ace 99.2 1.6E-09 3.5E-14 117.5 19.9 113 496-610 48-182 (379)
113 PF00756 Esterase: Putative es 99.2 3.5E-11 7.6E-16 123.0 6.1 135 477-613 5-153 (251)
114 PRK11126 2-succinyl-6-hydroxy- 99.2 1.7E-09 3.7E-14 109.7 18.4 99 497-610 3-102 (242)
115 PRK08775 homoserine O-acetyltr 99.1 1.7E-09 3.7E-14 116.0 17.0 79 520-610 94-173 (343)
116 PRK10439 enterobactin/ferric e 99.1 1.7E-08 3.8E-13 109.4 23.9 218 466-724 179-408 (411)
117 PLN03084 alpha/beta hydrolase 99.0 7.1E-09 1.5E-13 111.5 18.1 122 474-610 111-232 (383)
118 PF03583 LIP: Secretory lipase 99.0 9.8E-09 2.1E-13 106.4 17.2 195 517-726 18-282 (290)
119 KOG4627 Kynurenine formamidase 99.0 1.5E-09 3.3E-14 100.5 9.5 199 495-724 66-266 (270)
120 PF00930 DPPIV_N: Dipeptidyl p 99.0 8.9E-08 1.9E-12 102.9 24.0 203 127-339 104-350 (353)
121 PRK05855 short chain dehydroge 99.0 1.2E-08 2.5E-13 117.9 18.4 107 473-595 8-114 (582)
122 PLN02980 2-oxoglutarate decarb 98.9 3.5E-08 7.6E-13 124.6 21.0 110 495-609 1370-1479(1655)
123 KOG3043 Predicted hydrolase re 98.9 3.5E-08 7.6E-13 93.5 15.0 170 515-726 57-241 (242)
124 cd00312 Esterase_lipase Estera 98.9 3E-09 6.4E-14 120.1 9.5 130 479-612 78-215 (493)
125 PF12740 Chlorophyllase2: Chlo 98.9 1.3E-08 2.9E-13 101.0 12.6 177 481-704 5-205 (259)
126 PF03403 PAF-AH_p_II: Platelet 98.9 2.3E-08 5E-13 107.2 15.0 113 493-608 97-260 (379)
127 PF14583 Pectate_lyase22: Olig 98.9 2.8E-06 6E-11 88.7 28.7 212 125-352 37-275 (386)
128 COG0627 Predicted esterase [Ge 98.9 4.3E-08 9.3E-13 101.5 14.6 224 493-727 51-313 (316)
129 PF05728 UPF0227: Uncharacteri 98.8 1.1E-07 2.4E-12 91.1 16.2 182 498-722 1-186 (187)
130 COG2272 PnbA Carboxylesterase 98.8 1E-08 2.2E-13 108.7 8.7 128 480-611 80-218 (491)
131 KOG1454 Predicted hydrolase/ac 98.8 1.5E-07 3.3E-12 99.0 17.0 213 494-725 56-324 (326)
132 TIGR01838 PHA_synth_I poly(R)- 98.8 1.5E-07 3.3E-12 104.4 17.5 109 497-613 189-305 (532)
133 PF06342 DUF1057: Alpha/beta h 98.8 2.2E-07 4.9E-12 91.8 16.5 204 468-685 7-240 (297)
134 KOG4409 Predicted hydrolase/ac 98.8 6.3E-07 1.4E-11 91.1 19.2 103 497-609 91-194 (365)
135 PRK06765 homoserine O-acetyltr 98.7 1.1E-06 2.4E-11 94.9 19.9 135 472-608 30-194 (389)
136 COG4946 Uncharacterized protei 98.7 4.6E-06 1E-10 86.5 22.5 107 124-239 402-510 (668)
137 PRK07868 acyl-CoA synthetase; 98.7 5.8E-07 1.3E-11 109.6 19.0 106 495-612 66-179 (994)
138 PF00561 Abhydrolase_1: alpha/ 98.6 2.7E-08 5.8E-13 99.6 5.5 78 526-609 1-78 (230)
139 PF08662 eIF2A: Eukaryotic tra 98.6 4.8E-06 1E-10 81.1 19.2 146 128-283 10-164 (194)
140 PF00135 COesterase: Carboxyle 98.6 1E-07 2.2E-12 108.9 8.7 129 479-609 108-244 (535)
141 COG4946 Uncharacterized protei 98.6 1E-05 2.2E-10 84.0 21.7 247 131-416 44-303 (668)
142 COG4757 Predicted alpha/beta h 98.6 1.4E-06 3.1E-11 82.8 13.9 239 470-722 8-280 (281)
143 COG4188 Predicted dienelactone 98.5 5.2E-07 1.1E-11 93.0 11.6 130 467-598 38-182 (365)
144 PF08538 DUF1749: Protein of u 98.5 6.4E-07 1.4E-11 90.8 11.4 110 496-613 33-151 (303)
145 cd00707 Pancreat_lipase_like P 98.5 3.4E-07 7.3E-12 94.4 9.7 112 494-610 34-147 (275)
146 KOG3847 Phospholipase A2 (plat 98.5 4.4E-06 9.5E-11 82.9 16.1 113 493-608 115-273 (399)
147 PF02897 Peptidase_S9_N: Proly 98.5 0.00027 5.9E-09 77.9 32.0 252 57-352 132-407 (414)
148 PRK13616 lipoprotein LpqB; Pro 98.5 1.3E-05 2.8E-10 90.8 21.3 160 125-301 351-527 (591)
149 PF10340 DUF2424: Protein of u 98.5 7.2E-06 1.6E-10 85.9 17.4 120 482-613 108-238 (374)
150 KOG2564 Predicted acetyltransf 98.5 1E-06 2.2E-11 86.1 10.3 117 466-595 49-166 (343)
151 TIGR03866 PQQ_ABC_repeats PQQ- 98.4 0.00027 5.9E-09 73.5 28.9 141 127-282 34-176 (300)
152 KOG2624 Triglyceride lipase-ch 98.4 7.2E-06 1.6E-10 87.5 16.6 143 462-611 43-200 (403)
153 TIGR01839 PHA_synth_II poly(R) 98.4 1.2E-05 2.5E-10 88.7 18.4 88 515-613 237-331 (560)
154 PF06821 Ser_hydrolase: Serine 98.4 1.3E-05 2.9E-10 76.0 15.4 159 499-712 1-162 (171)
155 KOG2984 Predicted hydrolase [G 98.4 1.1E-06 2.4E-11 81.6 7.7 209 498-724 44-275 (277)
156 KOG1553 Predicted alpha/beta h 98.4 2.5E-06 5.4E-11 85.4 10.6 136 466-614 213-349 (517)
157 TIGR03230 lipo_lipase lipoprot 98.3 3.6E-06 7.8E-11 91.0 12.4 111 495-609 40-153 (442)
158 PF07224 Chlorophyllase: Chlor 98.3 3.8E-06 8.3E-11 81.7 11.2 133 462-610 11-157 (307)
159 COG2382 Fes Enterochelin ester 98.3 4.4E-06 9.6E-11 83.7 11.8 206 468-711 70-288 (299)
160 PF02273 Acyl_transf_2: Acyl t 98.3 3.1E-05 6.7E-10 74.7 15.6 214 472-707 7-240 (294)
161 PF14583 Pectate_lyase22: Olig 98.3 0.0013 2.9E-08 69.0 28.9 159 129-301 86-272 (386)
162 TIGR03502 lipase_Pla1_cef extr 98.3 8E-06 1.7E-10 93.8 13.6 99 495-595 448-575 (792)
163 COG3571 Predicted hydrolase of 98.3 0.00018 3.8E-09 64.7 18.9 143 497-676 15-161 (213)
164 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00087 1.9E-08 70.7 27.4 244 130-412 52-334 (352)
165 PF08662 eIF2A: Eukaryotic tra 98.2 2.7E-05 5.9E-10 75.8 14.6 103 125-237 61-163 (194)
166 COG2819 Predicted hydrolase of 98.2 0.00012 2.6E-09 72.6 18.8 144 465-610 7-172 (264)
167 PF09752 DUF2048: Uncharacteri 98.2 6E-05 1.3E-09 77.8 17.0 124 481-608 78-208 (348)
168 PRK13616 lipoprotein LpqB; Pro 98.2 0.00019 4.1E-09 81.5 22.0 116 126-252 399-529 (591)
169 TIGR03866 PQQ_ABC_repeats PQQ- 98.2 0.00056 1.2E-08 71.2 24.2 194 128-351 77-281 (300)
170 PF03959 FSH1: Serine hydrolas 98.1 8.5E-06 1.8E-10 80.7 9.3 168 495-709 3-206 (212)
171 COG2021 MET2 Homoserine acetyl 98.1 5.4E-05 1.2E-09 78.2 14.6 204 494-705 49-349 (368)
172 PF10282 Lactonase: Lactonase, 98.1 0.0034 7.4E-08 67.3 28.9 262 126-417 39-333 (345)
173 PRK11028 6-phosphogluconolacto 98.1 0.0021 4.4E-08 68.5 26.6 146 126-282 37-194 (330)
174 COG1073 Hydrolases of the alph 98.1 6.4E-05 1.4E-09 78.3 14.2 236 478-726 31-298 (299)
175 PF12146 Hydrolase_4: Putative 98.0 2.4E-05 5.1E-10 63.8 8.3 78 477-567 1-78 (79)
176 PF05677 DUF818: Chlamydia CHL 98.0 3.7E-05 7.9E-10 78.3 11.3 122 463-596 108-236 (365)
177 KOG2551 Phospholipase/carboxyh 98.0 0.00023 5.1E-09 68.0 15.8 176 495-716 4-214 (230)
178 KOG2112 Lysophospholipase [Lip 98.0 0.00023 4.9E-09 67.7 15.5 185 497-724 4-203 (206)
179 PRK10115 protease 2; Provision 98.0 0.0035 7.6E-08 73.2 28.9 246 57-350 135-395 (686)
180 KOG0293 WD40 repeat-containing 98.0 0.00024 5.1E-09 73.0 16.5 195 125-349 226-425 (519)
181 TIGR01849 PHB_depoly_PhaZ poly 98.0 0.00041 8.8E-09 74.4 18.6 87 515-613 120-211 (406)
182 COG2706 3-carboxymuconate cycl 98.0 0.0091 2E-07 61.1 26.9 264 125-417 41-332 (346)
183 KOG2314 Translation initiation 97.9 0.0033 7.1E-08 67.2 23.9 225 104-349 280-525 (698)
184 PRK11028 6-phosphogluconolacto 97.9 0.0022 4.9E-08 68.2 23.6 199 127-349 83-306 (330)
185 PF10282 Lactonase: Lactonase, 97.9 0.015 3.2E-07 62.4 29.1 201 128-351 91-326 (345)
186 TIGR02658 TTQ_MADH_Hv methylam 97.9 0.015 3.2E-07 61.5 27.3 116 134-252 11-138 (352)
187 COG3208 GrsT Predicted thioest 97.8 0.00031 6.7E-09 68.6 13.5 186 496-707 8-219 (244)
188 KOG2382 Predicted alpha/beta h 97.8 0.00072 1.6E-08 69.0 16.4 100 494-604 50-153 (315)
189 KOG0318 WD40 repeat stress pro 97.8 0.0042 9.1E-08 66.0 22.4 191 124-337 60-299 (603)
190 KOG4497 Uncharacterized conser 97.8 0.00024 5.2E-09 70.9 12.4 141 128-284 13-155 (447)
191 PF08450 SGL: SMP-30/Gluconola 97.8 0.04 8.6E-07 55.9 29.0 194 128-349 4-213 (246)
192 PRK04940 hypothetical protein; 97.8 0.00059 1.3E-08 64.3 13.9 119 575-723 60-178 (180)
193 KOG0279 G protein beta subunit 97.8 0.019 4.1E-07 56.7 23.8 195 125-351 65-264 (315)
194 KOG0318 WD40 repeat stress pro 97.8 0.0049 1.1E-07 65.6 21.3 193 125-349 192-392 (603)
195 COG0596 MhpC Predicted hydrola 97.7 0.00015 3.3E-09 73.0 10.2 100 496-610 21-123 (282)
196 KOG1516 Carboxylesterase and r 97.7 7.2E-05 1.6E-09 85.6 7.9 127 480-610 97-232 (545)
197 KOG2055 WD40 repeat protein [G 97.7 0.001 2.2E-08 69.5 15.1 199 125-346 305-511 (514)
198 PF02239 Cytochrom_D1: Cytochr 97.7 0.0051 1.1E-07 66.2 21.1 155 127-301 40-202 (369)
199 cd00200 WD40 WD40 domain, foun 97.7 0.064 1.4E-06 54.2 28.6 112 125-251 11-124 (289)
200 COG3545 Predicted esterase of 97.6 0.0048 1E-07 57.1 16.9 108 551-685 38-145 (181)
201 PF11339 DUF3141: Protein of u 97.6 0.0018 4E-08 69.5 16.3 103 494-612 67-178 (581)
202 PF10142 PhoPQ_related: PhoPQ- 97.6 0.0046 9.9E-08 65.5 18.9 145 569-725 166-320 (367)
203 PF05577 Peptidase_S28: Serine 97.6 0.0003 6.5E-09 78.0 10.5 114 496-612 29-150 (434)
204 PTZ00420 coronin; Provisional 97.6 0.0094 2E-07 67.2 22.1 149 125-283 127-283 (568)
205 KOG0315 G-protein beta subunit 97.5 0.0076 1.6E-07 58.4 17.5 147 125-282 42-235 (311)
206 PF02239 Cytochrom_D1: Cytochr 97.5 0.013 2.7E-07 63.2 21.6 101 138-251 7-109 (369)
207 KOG2139 WD40 repeat protein [G 97.5 0.0012 2.5E-08 67.0 12.4 114 123-250 195-311 (445)
208 KOG0293 WD40 repeat-containing 97.5 0.00075 1.6E-08 69.4 11.0 136 125-276 271-409 (519)
209 PTZ00420 coronin; Provisional 97.5 0.076 1.6E-06 60.1 27.6 113 125-252 76-199 (568)
210 PF06433 Me-amine-dh_H: Methyl 97.5 0.095 2.1E-06 54.4 25.6 246 126-413 38-325 (342)
211 KOG0271 Notchless-like WD40 re 97.5 0.00078 1.7E-08 68.7 10.1 95 125-233 369-467 (480)
212 PTZ00421 coronin; Provisional 97.4 0.063 1.4E-06 60.1 26.1 114 125-252 77-200 (493)
213 COG3386 Gluconolactonase [Carb 97.4 0.074 1.6E-06 55.4 24.1 248 128-412 29-292 (307)
214 KOG2096 WD40 repeat protein [G 97.4 0.041 8.9E-07 55.2 20.7 212 111-349 77-310 (420)
215 PF11144 DUF2920: Protein of u 97.4 0.0095 2.1E-07 63.0 17.4 208 478-689 20-325 (403)
216 KOG0291 WD40-repeat-containing 97.3 0.021 4.6E-07 63.5 20.0 146 123-283 350-499 (893)
217 PTZ00421 coronin; Provisional 97.3 0.026 5.6E-07 63.1 21.2 147 125-281 127-278 (493)
218 KOG0266 WD40 repeat-containing 97.3 0.072 1.6E-06 59.4 24.8 145 123-282 203-354 (456)
219 PF10230 DUF2305: Uncharacteri 97.3 0.0023 5E-08 65.6 11.7 112 496-611 2-123 (266)
220 KOG0272 U4/U6 small nuclear ri 97.2 0.008 1.7E-07 62.4 14.6 111 124-247 262-374 (459)
221 cd00200 WD40 WD40 domain, foun 97.2 0.086 1.9E-06 53.3 22.8 112 125-251 95-208 (289)
222 KOG2055 WD40 repeat protein [G 97.1 0.0096 2.1E-07 62.5 13.3 144 124-283 258-408 (514)
223 COG2706 3-carboxymuconate cycl 97.1 0.48 1E-05 48.8 29.8 240 152-419 18-287 (346)
224 PTZ00472 serine carboxypeptida 97.0 0.0044 9.6E-08 68.7 11.4 131 477-613 60-219 (462)
225 COG3150 Predicted esterase [Ge 97.0 0.022 4.8E-07 52.1 13.6 140 555-722 41-186 (191)
226 PF06057 VirJ: Bacterial virul 97.0 0.0089 1.9E-07 56.6 11.4 82 516-608 20-105 (192)
227 PF07819 PGAP1: PGAP1-like pro 97.0 0.0059 1.3E-07 60.9 10.9 102 497-607 5-120 (225)
228 PF06028 DUF915: Alpha/beta hy 97.0 0.022 4.7E-07 57.6 14.8 197 496-707 12-239 (255)
229 PF08450 SGL: SMP-30/Gluconola 96.9 0.055 1.2E-06 54.8 17.9 149 123-282 85-245 (246)
230 KOG0645 WD40 repeat protein [G 96.9 0.51 1.1E-05 46.8 22.8 195 125-345 16-223 (312)
231 PF10647 Gmad1: Lipoprotein Lp 96.9 0.17 3.7E-06 51.5 20.9 154 125-285 25-187 (253)
232 KOG0271 Notchless-like WD40 re 96.9 0.032 6.9E-07 57.3 14.8 72 125-206 117-190 (480)
233 PF07676 PD40: WD40-like Beta 96.8 0.0016 3.4E-08 45.0 3.8 29 126-154 11-39 (39)
234 PLN02733 phosphatidylcholine-s 96.8 0.0029 6.3E-08 69.1 7.6 90 512-610 108-201 (440)
235 KOG0263 Transcription initiati 96.8 0.012 2.6E-07 65.6 12.3 112 125-251 537-650 (707)
236 KOG0266 WD40 repeat-containing 96.8 0.35 7.7E-06 53.9 24.2 140 125-280 161-306 (456)
237 PF00151 Lipase: Lipase; Inte 96.8 0.002 4.3E-08 67.9 5.8 112 493-608 68-185 (331)
238 KOG1446 Histone H3 (Lys4) meth 96.8 0.77 1.7E-05 46.4 26.3 114 125-251 16-131 (311)
239 KOG0973 Histone transcription 96.6 0.086 1.9E-06 61.2 17.9 140 125-280 71-237 (942)
240 KOG1407 WD40 repeat protein [F 96.6 0.16 3.4E-06 49.9 17.0 149 125-299 22-177 (313)
241 KOG1446 Histone H3 (Lys4) meth 96.6 0.051 1.1E-06 54.6 14.1 112 128-252 145-264 (311)
242 KOG4389 Acetylcholinesterase/B 96.6 0.0032 7E-08 66.8 5.8 112 498-611 137-256 (601)
243 KOG1407 WD40 repeat protein [F 96.6 0.86 1.9E-05 45.0 21.7 141 125-281 66-208 (313)
244 KOG2183 Prolylcarboxypeptidase 96.6 0.0078 1.7E-07 62.8 8.4 132 478-612 63-205 (492)
245 KOG4840 Predicted hydrolases o 96.6 0.013 2.9E-07 55.9 8.9 106 498-613 37-147 (299)
246 TIGR02171 Fb_sc_TIGR02171 Fibr 96.5 0.019 4.2E-07 66.3 11.7 119 136-262 319-453 (912)
247 PF01674 Lipase_2: Lipase (cla 96.5 0.0033 7.1E-08 61.9 4.8 89 499-595 4-95 (219)
248 KOG3253 Predicted alpha/beta h 96.5 0.062 1.3E-06 58.8 14.5 166 496-707 176-348 (784)
249 KOG1274 WD40 repeat protein [G 96.5 0.032 6.9E-07 63.5 12.8 114 125-251 140-263 (933)
250 PF03096 Ndr: Ndr family; Int 96.5 0.087 1.9E-06 53.5 14.9 235 472-727 4-280 (283)
251 KOG0645 WD40 repeat protein [G 96.5 1 2.3E-05 44.6 21.4 112 125-248 63-180 (312)
252 PF05990 DUF900: Alpha/beta hy 96.4 0.02 4.3E-07 57.4 9.9 111 495-611 17-138 (233)
253 KOG3967 Uncharacterized conser 96.4 0.057 1.2E-06 51.3 11.8 109 483-598 89-213 (297)
254 COG3243 PhaC Poly(3-hydroxyalk 96.3 0.023 5E-07 60.0 10.1 86 515-613 129-220 (445)
255 KOG0305 Anaphase promoting com 96.3 0.58 1.3E-05 51.3 21.1 138 125-279 219-360 (484)
256 COG1770 PtrB Protease II [Amin 96.3 2.6 5.6E-05 47.5 29.1 260 132-418 82-358 (682)
257 PF00450 Peptidase_S10: Serine 96.3 0.043 9.4E-07 60.4 12.8 141 470-613 16-184 (415)
258 KOG0291 WD40-repeat-containing 96.2 1.9 4E-05 48.8 24.1 238 125-410 309-552 (893)
259 COG4947 Uncharacterized protei 96.2 0.003 6.4E-08 57.6 2.4 52 562-615 90-141 (227)
260 KOG0272 U4/U6 small nuclear ri 96.2 0.16 3.4E-06 53.1 15.0 191 124-345 218-416 (459)
261 KOG2565 Predicted hydrolases o 96.2 0.025 5.5E-07 58.2 9.2 122 475-607 131-261 (469)
262 PF07433 DUF1513: Protein of u 96.1 1.2 2.6E-05 45.9 20.9 62 125-186 52-116 (305)
263 KOG1273 WD40 repeat protein [G 96.1 0.7 1.5E-05 46.7 18.5 108 128-251 28-138 (405)
264 KOG2048 WD40 repeat protein [G 96.1 0.12 2.7E-06 56.9 14.5 123 125-260 384-513 (691)
265 KOG1063 RNA polymerase II elon 96.1 0.05 1.1E-06 60.1 11.3 119 123-247 525-647 (764)
266 PF00975 Thioesterase: Thioest 96.1 0.036 7.9E-07 55.3 10.0 96 498-607 2-101 (229)
267 KOG0279 G protein beta subunit 96.1 0.17 3.8E-06 50.1 13.9 99 125-234 194-300 (315)
268 PLN00181 protein SPA1-RELATED; 96.1 1.5 3.3E-05 52.7 25.5 195 125-349 485-690 (793)
269 COG5354 Uncharacterized protei 95.9 0.94 2E-05 48.8 19.6 142 128-282 136-294 (561)
270 PF05705 DUF829: Eukaryotic pr 95.8 0.33 7.2E-06 49.0 15.8 47 656-707 177-225 (240)
271 COG3391 Uncharacterized conser 95.8 1.7 3.6E-05 47.3 22.1 157 126-301 76-239 (381)
272 KOG2110 Uncharacterized conser 95.8 0.16 3.4E-06 52.3 12.8 114 124-248 130-248 (391)
273 KOG2182 Hydrolytic enzymes of 95.8 0.062 1.4E-06 57.8 10.5 117 495-611 85-208 (514)
274 KOG2394 WD40 protein DMR-N9 [G 95.8 0.033 7.1E-07 59.7 8.2 57 125-186 292-350 (636)
275 KOG0289 mRNA splicing factor [ 95.8 1.3 2.8E-05 46.7 19.3 160 125-313 305-470 (506)
276 PF06433 Me-amine-dh_H: Methyl 95.7 3.2 7E-05 43.4 24.0 162 125-301 96-277 (342)
277 PRK02888 nitrous-oxide reducta 95.7 0.13 2.8E-06 57.8 12.8 135 130-280 199-338 (635)
278 PF12048 DUF3530: Protein of u 95.7 1.8 3.8E-05 45.5 20.8 134 468-608 63-227 (310)
279 KOG0275 Conserved WD40 repeat- 95.7 0.08 1.7E-06 53.1 9.8 107 126-245 266-375 (508)
280 KOG0973 Histone transcription 95.6 0.022 4.8E-07 65.9 6.8 102 125-236 131-238 (942)
281 KOG4388 Hormone-sensitive lipa 95.6 0.026 5.7E-07 61.1 6.8 86 496-593 396-487 (880)
282 PF07676 PD40: WD40-like Beta 95.6 0.028 6.1E-07 38.6 4.8 32 168-199 8-39 (39)
283 KOG2237 Predicted serine prote 95.6 0.53 1.1E-05 52.4 16.7 83 104-188 106-189 (712)
284 KOG0278 Serine/threonine kinas 95.6 0.19 4.1E-06 49.0 11.8 114 125-251 186-300 (334)
285 KOG2096 WD40 repeat protein [G 95.5 0.13 2.9E-06 51.7 10.8 113 127-251 232-361 (420)
286 TIGR02171 Fb_sc_TIGR02171 Fibr 95.5 0.26 5.5E-06 57.4 14.5 105 125-236 351-469 (912)
287 PF10647 Gmad1: Lipoprotein Lp 95.5 0.88 1.9E-05 46.3 17.3 120 125-251 67-198 (253)
288 COG3386 Gluconolactonase [Carb 95.5 0.32 6.9E-06 50.8 14.2 153 125-285 112-278 (307)
289 KOG2931 Differentiation-relate 95.4 0.35 7.5E-06 48.8 13.3 131 467-609 22-156 (326)
290 PF07082 DUF1350: Protein of u 95.3 0.11 2.4E-06 51.3 9.7 174 483-687 9-190 (250)
291 KOG4378 Nuclear protein COP1 [ 95.3 0.34 7.4E-06 51.7 13.5 119 126-259 167-289 (673)
292 PLN00181 protein SPA1-RELATED; 95.3 5.9 0.00013 47.7 26.4 112 125-252 534-650 (793)
293 KOG2314 Translation initiation 95.2 0.39 8.5E-06 52.0 13.7 149 129-279 399-554 (698)
294 KOG0315 G-protein beta subunit 95.2 2.5 5.5E-05 41.5 17.9 175 149-350 19-198 (311)
295 KOG0639 Transducin-like enhanc 95.1 0.43 9.3E-06 51.0 13.7 110 127-252 513-624 (705)
296 KOG0306 WD40-repeat-containing 95.1 1.3 2.8E-05 49.9 17.7 191 129-347 418-620 (888)
297 KOG0296 Angio-associated migra 95.0 0.73 1.6E-05 47.5 14.5 113 125-252 108-222 (399)
298 KOG1445 Tumor-specific antigen 95.0 0.16 3.4E-06 55.6 10.3 116 125-251 679-799 (1012)
299 KOG0771 Prolactin regulatory e 95.0 0.65 1.4E-05 48.7 14.3 147 127-284 148-303 (398)
300 KOG0650 WD40 repeat nucleolar 94.9 0.39 8.4E-06 52.5 13.0 199 125-351 402-639 (733)
301 KOG2315 Predicted translation 94.9 0.97 2.1E-05 49.2 15.7 145 128-284 222-376 (566)
302 PLN02919 haloacid dehalogenase 94.8 6.9 0.00015 48.4 25.2 113 127-251 627-771 (1057)
303 PF07433 DUF1513: Protein of u 94.8 0.34 7.5E-06 49.7 11.8 101 129-236 10-117 (305)
304 KOG1539 WD repeat protein [Gen 94.7 0.15 3.2E-06 57.7 9.6 81 148-237 554-637 (910)
305 KOG1273 WD40 repeat protein [G 94.7 2.3 5E-05 43.1 16.7 114 125-251 67-184 (405)
306 KOG0268 Sof1-like rRNA process 94.7 0.18 3.8E-06 51.8 9.1 116 123-251 187-303 (433)
307 KOG4497 Uncharacterized conser 94.6 0.31 6.8E-06 49.4 10.4 104 125-239 50-155 (447)
308 KOG0305 Anaphase promoting com 94.5 5.1 0.00011 44.2 20.4 247 109-405 167-418 (484)
309 KOG0643 Translation initiation 94.4 0.57 1.2E-05 46.3 11.6 112 125-243 95-215 (327)
310 PLN03016 sinapoylglucose-malat 94.4 0.39 8.4E-06 52.8 12.0 139 470-613 42-213 (433)
311 KOG1274 WD40 repeat protein [G 94.4 2 4.4E-05 49.5 17.5 143 125-281 98-251 (933)
312 KOG0772 Uncharacterized conser 94.3 9.6 0.00021 41.4 21.2 152 114-278 159-333 (641)
313 PF07519 Tannase: Tannase and 94.2 0.25 5.5E-06 55.0 10.2 131 479-614 16-154 (474)
314 KOG0277 Peroxisomal targeting 94.2 2.8 6.1E-05 41.3 15.7 195 128-349 13-221 (311)
315 COG3319 Thioesterase domains o 94.2 0.21 4.6E-06 50.5 8.5 85 497-595 1-85 (257)
316 PF06977 SdiA-regulated: SdiA- 94.2 7.2 0.00016 39.4 23.0 203 106-335 7-239 (248)
317 PLN02209 serine carboxypeptida 94.1 0.53 1.2E-05 51.8 12.3 140 470-613 44-215 (437)
318 KOG0771 Prolactin regulatory e 94.1 1.2 2.7E-05 46.7 14.0 114 125-251 188-312 (398)
319 KOG0643 Translation initiation 94.0 4.8 0.0001 40.1 17.0 119 125-252 54-179 (327)
320 KOG0290 Conserved WD40 repeat- 94.0 2.8 6E-05 42.2 15.3 130 125-265 152-289 (364)
321 KOG2139 WD40 repeat protein [G 93.8 1.2 2.7E-05 45.9 13.0 114 170-301 197-311 (445)
322 COG1506 DAP2 Dipeptidyl aminop 93.5 11 0.00023 43.9 22.3 207 125-348 102-343 (620)
323 COG5354 Uncharacterized protei 93.5 1.5 3.3E-05 47.2 13.6 146 123-279 220-376 (561)
324 COG4782 Uncharacterized protei 93.5 0.44 9.6E-06 49.6 9.5 110 497-613 117-237 (377)
325 PF11187 DUF2974: Protein of u 93.3 0.11 2.5E-06 51.4 4.9 48 560-607 69-120 (224)
326 KOG0772 Uncharacterized conser 93.3 2.3 4.9E-05 46.0 14.4 145 123-279 268-426 (641)
327 KOG0296 Angio-associated migra 93.3 4.3 9.3E-05 42.1 15.8 142 125-282 66-210 (399)
328 KOG2106 Uncharacterized conser 93.3 0.9 1.9E-05 48.8 11.4 96 128-234 412-508 (626)
329 PF05057 DUF676: Putative seri 93.2 0.21 4.4E-06 49.6 6.6 21 574-594 77-97 (217)
330 KOG2315 Predicted translation 93.2 1.4 3.1E-05 48.0 12.9 103 125-237 272-374 (566)
331 PRK10252 entF enterobactin syn 93.1 0.46 1E-05 60.6 11.3 98 497-608 1069-1169(1296)
332 KOG0288 WD40 repeat protein Ti 93.0 0.51 1.1E-05 49.3 9.0 102 125-236 343-450 (459)
333 KOG1282 Serine carboxypeptidas 92.9 0.7 1.5E-05 50.6 10.4 142 470-613 49-216 (454)
334 KOG2110 Uncharacterized conser 92.8 0.75 1.6E-05 47.5 9.7 76 106-187 153-237 (391)
335 KOG1539 WD repeat protein [Gen 92.5 0.45 9.7E-06 54.0 8.4 60 125-189 578-638 (910)
336 KOG0263 Transcription initiati 92.5 5.5 0.00012 45.3 16.7 138 125-279 453-594 (707)
337 KOG0273 Beta-transducin family 92.5 0.28 6.2E-06 52.0 6.5 60 125-189 454-514 (524)
338 KOG0278 Serine/threonine kinas 92.3 7.4 0.00016 38.4 15.2 189 126-348 103-298 (334)
339 KOG3975 Uncharacterized conser 92.1 3.7 8E-05 40.6 13.0 117 477-595 10-130 (301)
340 KOG1408 WD40 repeat protein [F 92.1 1.1 2.3E-05 50.2 10.4 114 125-251 80-197 (1080)
341 PF02450 LCAT: Lecithin:choles 92.1 0.32 6.9E-06 52.9 6.6 88 513-609 66-159 (389)
342 COG4814 Uncharacterized protei 92.0 5.8 0.00013 39.4 14.2 179 495-687 45-252 (288)
343 KOG0275 Conserved WD40 repeat- 91.8 1.4 3.1E-05 44.5 10.1 61 125-190 308-370 (508)
344 KOG2048 WD40 repeat protein [G 91.8 27 0.00058 39.4 21.4 169 216-415 381-555 (691)
345 KOG1445 Tumor-specific antigen 91.7 0.89 1.9E-05 50.0 9.2 61 125-190 722-786 (1012)
346 KOG0286 G-protein beta subunit 91.7 7.2 0.00016 39.3 14.7 113 125-251 188-304 (343)
347 KOG0283 WD40 repeat-containing 91.5 1.7 3.8E-05 49.4 11.6 122 110-251 444-577 (712)
348 KOG1538 Uncharacterized conser 90.7 3.1 6.6E-05 46.3 12.1 56 125-186 14-71 (1081)
349 KOG0646 WD40 repeat protein [G 90.7 26 0.00057 37.7 18.5 56 126-186 84-141 (476)
350 PLN02919 haloacid dehalogenase 90.7 15 0.00033 45.5 19.7 113 128-251 687-834 (1057)
351 KOG0640 mRNA cleavage stimulat 90.6 6.4 0.00014 39.9 13.3 110 127-251 116-247 (430)
352 KOG0640 mRNA cleavage stimulat 90.3 17 0.00037 37.0 15.9 114 125-251 218-336 (430)
353 COG1075 LipA Predicted acetylt 90.3 1.1 2.4E-05 47.6 8.5 99 498-610 61-164 (336)
354 PF03088 Str_synth: Strictosid 90.2 3.1 6.8E-05 34.5 9.2 73 173-250 2-87 (89)
355 COG3490 Uncharacterized protei 90.0 7.3 0.00016 39.3 13.0 108 168-283 67-181 (366)
356 KOG1009 Chromatin assembly com 89.8 3.1 6.8E-05 43.6 10.8 105 124-238 66-186 (434)
357 PF01764 Lipase_3: Lipase (cla 89.8 0.68 1.5E-05 42.1 5.7 38 556-595 47-84 (140)
358 KOG0283 WD40 repeat-containing 89.8 4.9 0.00011 45.9 13.2 101 125-238 371-472 (712)
359 PF08386 Abhydrolase_4: TAP-li 89.7 0.79 1.7E-05 39.4 5.6 44 656-706 33-76 (103)
360 KOG0295 WD40 repeat-containing 89.6 9.8 0.00021 39.5 13.9 111 127-251 239-365 (406)
361 PF13360 PQQ_2: PQQ-like domai 89.5 23 0.0005 35.0 17.8 188 131-351 32-232 (238)
362 KOG4499 Ca2+-binding protein R 89.4 13 0.00028 36.5 13.9 121 125-253 110-244 (310)
363 KOG0303 Actin-binding protein 89.3 9.6 0.00021 40.0 13.8 72 125-205 133-205 (472)
364 KOG0273 Beta-transducin family 89.1 16 0.00035 39.3 15.5 71 125-205 237-308 (524)
365 KOG0286 G-protein beta subunit 89.0 28 0.00062 35.3 20.9 193 125-345 57-257 (343)
366 KOG1523 Actin-related protein 88.9 5 0.00011 41.0 11.1 121 126-252 103-238 (361)
367 KOG0302 Ribosome Assembly prot 88.4 36 0.00078 35.8 17.3 112 128-251 216-333 (440)
368 KOG2541 Palmitoyl protein thio 88.4 11 0.00024 37.9 12.9 88 496-595 24-112 (296)
369 cd00741 Lipase Lipase. Lipase 88.0 0.71 1.5E-05 42.8 4.5 25 573-597 26-50 (153)
370 KOG0647 mRNA export protein (c 87.8 35 0.00075 34.9 17.9 74 125-207 29-106 (347)
371 KOG0288 WD40 repeat protein Ti 87.7 0.73 1.6E-05 48.2 4.6 57 125-186 389-449 (459)
372 PRK13614 lipoprotein LpqB; Pro 87.7 45 0.00098 38.0 19.2 162 125-300 344-517 (573)
373 KOG1009 Chromatin assembly com 87.6 0.87 1.9E-05 47.6 5.1 107 125-236 125-249 (434)
374 KOG0303 Actin-binding protein 87.5 42 0.00091 35.5 19.4 113 125-251 83-204 (472)
375 KOG0265 U5 snRNP-specific prot 87.1 12 0.00025 38.1 12.3 112 125-250 49-163 (338)
376 PRK02888 nitrous-oxide reducta 86.7 3.5 7.6E-05 46.6 9.6 112 128-251 239-352 (635)
377 KOG2394 WD40 protein DMR-N9 [G 86.7 2.4 5.1E-05 46.1 7.8 55 170-234 292-349 (636)
378 KOG0313 Microtubule binding pr 86.5 14 0.00031 38.6 13.0 114 124-251 261-377 (423)
379 KOG2919 Guanine nucleotide-bin 86.5 43 0.00092 34.6 16.3 113 126-252 52-189 (406)
380 PRK13613 lipoprotein LpqB; Pro 86.5 33 0.00071 39.5 17.5 165 125-301 364-539 (599)
381 PF11288 DUF3089: Protein of u 86.3 0.95 2.1E-05 44.0 4.3 86 525-611 45-138 (207)
382 PF04083 Abhydro_lipase: Parti 86.1 2.4 5.2E-05 32.6 5.7 48 462-509 7-56 (63)
383 KOG0282 mRNA splicing factor [ 86.1 4.3 9.3E-05 43.6 9.3 60 126-189 302-363 (503)
384 PF04053 Coatomer_WDAD: Coatom 86.0 53 0.0011 36.3 18.3 47 126-181 35-81 (443)
385 KOG0282 mRNA splicing factor [ 85.9 9 0.00019 41.2 11.5 114 125-252 216-332 (503)
386 PF04762 IKI3: IKI3 family; I 85.9 95 0.0021 38.0 24.1 60 125-189 77-141 (928)
387 COG3490 Uncharacterized protei 85.7 7 0.00015 39.4 10.0 103 129-236 73-180 (366)
388 KOG4283 Transcription-coupled 84.6 42 0.00092 34.1 14.8 132 109-251 127-277 (397)
389 KOG0264 Nucleosome remodeling 84.1 11 0.00024 40.2 11.1 115 125-247 274-403 (422)
390 TIGR03712 acc_sec_asp2 accesso 83.9 8.6 0.00019 42.0 10.5 122 475-616 273-396 (511)
391 PRK13615 lipoprotein LpqB; Pro 83.8 85 0.0019 35.7 19.9 159 127-301 337-502 (557)
392 KOG0269 WD40 repeat-containing 83.7 17 0.00038 41.5 13.0 118 125-253 178-299 (839)
393 COG3391 Uncharacterized conser 83.7 70 0.0015 34.6 27.7 248 128-413 35-288 (381)
394 smart00824 PKS_TE Thioesterase 83.5 6.9 0.00015 37.7 9.3 81 514-607 15-99 (212)
395 PF04762 IKI3: IKI3 family; I 83.4 17 0.00037 44.3 14.1 108 128-238 214-325 (928)
396 KOG0319 WD40-repeat-containing 82.8 68 0.0015 36.7 17.0 194 123-347 192-395 (775)
397 PLN02454 triacylglycerol lipas 82.5 1.9 4.1E-05 46.4 5.0 40 555-594 208-247 (414)
398 KOG0284 Polyadenylation factor 82.4 4.8 0.0001 42.3 7.6 58 123-185 96-155 (464)
399 PF03283 PAE: Pectinacetyleste 82.2 2.3 4.9E-05 45.6 5.5 38 556-593 137-174 (361)
400 KOG0316 Conserved WD40 repeat- 82.2 54 0.0012 32.3 16.1 54 126-184 62-117 (307)
401 KOG0306 WD40-repeat-containing 82.0 1.1E+02 0.0023 35.5 22.4 144 125-285 456-614 (888)
402 cd00519 Lipase_3 Lipase (class 81.7 2.3 5E-05 42.4 5.2 37 557-595 112-148 (229)
403 KOG1408 WD40 repeat protein [F 81.2 32 0.00069 39.2 13.6 31 123-158 459-489 (1080)
404 KOG1007 WD repeat protein TSSC 81.0 68 0.0015 32.6 15.5 113 125-252 125-247 (370)
405 PF11768 DUF3312: Protein of u 80.9 25 0.00054 39.1 12.8 83 125-217 261-344 (545)
406 KOG1963 WD40 repeat protein [G 80.6 21 0.00046 41.3 12.5 110 126-251 208-323 (792)
407 PF06259 Abhydrolase_8: Alpha/ 80.6 4.6 9.9E-05 38.4 6.4 50 555-608 93-143 (177)
408 COG5276 Uncharacterized conser 80.5 72 0.0016 32.7 22.1 190 127-346 90-285 (370)
409 PLN02517 phosphatidylcholine-s 80.4 3.3 7.2E-05 46.4 6.1 75 514-595 158-233 (642)
410 KOG0294 WD40 repeat-containing 80.3 64 0.0014 33.2 14.4 151 125-301 129-283 (362)
411 PLN02408 phospholipase A1 80.1 2.5 5.4E-05 44.9 4.9 40 556-595 181-220 (365)
412 PF05694 SBP56: 56kDa selenium 79.9 29 0.00062 37.7 12.5 103 150-259 222-350 (461)
413 KOG0277 Peroxisomal targeting 79.8 67 0.0015 32.1 13.9 143 125-281 62-209 (311)
414 KOG1524 WD40 repeat-containing 79.8 13 0.00028 40.7 9.8 94 125-232 106-201 (737)
415 PLN02571 triacylglycerol lipas 79.5 2.6 5.6E-05 45.4 4.8 41 555-595 206-246 (413)
416 PF03088 Str_synth: Strictosid 79.5 16 0.00036 30.3 8.5 52 149-204 36-88 (89)
417 KOG0310 Conserved WD40 repeat- 79.2 1E+02 0.0022 33.6 20.6 113 125-251 70-185 (487)
418 KOG2111 Uncharacterized conser 78.8 7.4 0.00016 39.7 7.4 59 125-187 183-245 (346)
419 PF02333 Phytase: Phytase; In 78.4 1E+02 0.0022 33.2 23.3 196 136-349 68-290 (381)
420 PRK13613 lipoprotein LpqB; Pro 78.4 1.4E+02 0.0029 34.6 18.4 123 125-252 410-541 (599)
421 KOG0319 WD40-repeat-containing 78.3 66 0.0014 36.8 15.1 112 124-251 20-136 (775)
422 PF13449 Phytase-like: Esteras 77.8 73 0.0016 33.6 15.3 80 125-204 148-252 (326)
423 KOG3724 Negative regulator of 77.7 3 6.5E-05 47.8 4.7 46 558-604 158-210 (973)
424 KOG4227 WD40 repeat protein [G 77.5 82 0.0018 33.2 14.4 113 125-251 58-180 (609)
425 COG2939 Carboxypeptidase C (ca 76.7 16 0.00036 40.1 9.8 100 493-594 98-217 (498)
426 PLN02324 triacylglycerol lipas 76.3 3.6 7.8E-05 44.3 4.7 40 555-594 195-234 (415)
427 KOG0302 Ribosome Assembly prot 76.2 40 0.00086 35.5 11.8 117 124-250 258-378 (440)
428 PLN02802 triacylglycerol lipas 75.8 3.8 8.1E-05 45.1 4.8 39 556-594 311-349 (509)
429 KOG0264 Nucleosome remodeling 74.3 41 0.00089 36.0 11.6 116 125-251 229-348 (422)
430 KOG1551 Uncharacterized conser 74.0 7.7 0.00017 38.6 5.9 35 575-613 195-229 (371)
431 KOG0268 Sof1-like rRNA process 73.6 7.6 0.00017 40.3 6.0 115 125-251 231-348 (433)
432 PF13360 PQQ_2: PQQ-like domai 72.2 1E+02 0.0022 30.2 22.2 217 151-413 4-235 (238)
433 KOG4328 WD40 protein [Function 72.0 37 0.0008 36.6 10.7 139 125-276 236-383 (498)
434 KOG2919 Guanine nucleotide-bin 71.6 1.3E+02 0.0028 31.2 14.8 138 132-284 120-272 (406)
435 KOG2369 Lecithin:cholesterol a 71.3 8.1 0.00018 42.0 5.9 77 513-598 125-205 (473)
436 KOG0265 U5 snRNP-specific prot 71.1 1.3E+02 0.0028 30.9 14.6 115 124-251 175-297 (338)
437 KOG2321 WD40 repeat protein [G 71.1 1.6E+02 0.0035 33.0 15.3 31 126-160 54-84 (703)
438 KOG1520 Predicted alkaloid syn 70.9 29 0.00062 36.8 9.6 102 128-238 119-239 (376)
439 PHA03098 kelch-like protein; P 70.0 2E+02 0.0043 32.7 18.9 191 150-350 311-512 (534)
440 PF07995 GSDH: Glucose / Sorbo 69.5 59 0.0013 34.4 12.1 104 128-239 6-134 (331)
441 KOG0289 mRNA splicing factor [ 69.5 1.7E+02 0.0037 31.6 23.6 139 99-252 234-379 (506)
442 KOG0284 Polyadenylation factor 69.3 20 0.00043 38.0 7.9 99 125-233 266-366 (464)
443 PLN02761 lipase class 3 family 69.2 6.5 0.00014 43.5 4.7 40 555-594 270-313 (527)
444 PF15492 Nbas_N: Neuroblastoma 68.7 1.4E+02 0.0031 30.4 15.9 64 129-203 3-73 (282)
445 PLN02753 triacylglycerol lipas 68.4 6.9 0.00015 43.4 4.7 40 555-594 289-331 (531)
446 PLN00413 triacylglycerol lipas 68.3 7.7 0.00017 42.5 5.0 38 555-594 266-303 (479)
447 KOG1920 IkappaB kinase complex 68.3 2.7E+02 0.0058 34.3 17.5 59 125-188 70-129 (1265)
448 COG5276 Uncharacterized conser 68.2 1.5E+02 0.0032 30.5 18.5 103 222-341 91-194 (370)
449 KOG0639 Transducin-like enhanc 68.1 30 0.00066 37.6 9.1 100 125-237 594-694 (705)
450 PF07519 Tannase: Tannase and 67.6 6.7 0.00014 43.8 4.6 67 658-724 354-426 (474)
451 PF13449 Phytase-like: Esteras 67.6 1.7E+02 0.0037 30.9 20.7 178 168-349 19-251 (326)
452 KOG1920 IkappaB kinase complex 67.3 62 0.0013 39.4 12.2 110 129-242 201-314 (1265)
453 TIGR03300 assembly_YfgL outer 66.9 1.4E+02 0.0031 32.0 14.9 89 151-252 252-340 (377)
454 TIGR03606 non_repeat_PQQ dehyd 66.5 1E+02 0.0022 34.1 13.3 108 126-239 32-166 (454)
455 PLN02606 palmitoyl-protein thi 66.5 59 0.0013 33.7 10.6 101 495-607 26-129 (306)
456 KOG1524 WD40 repeat-containing 65.7 43 0.00092 36.9 9.7 86 128-238 191-277 (737)
457 PLN02310 triacylglycerol lipas 64.6 9.2 0.0002 41.2 4.7 40 555-594 187-228 (405)
458 KOG0299 U3 snoRNP-associated p 64.2 2.2E+02 0.0047 31.0 21.2 68 125-200 204-273 (479)
459 PLN02633 palmitoyl protein thi 63.9 74 0.0016 33.0 10.8 102 494-607 24-128 (314)
460 PLN02162 triacylglycerol lipas 63.7 11 0.00023 41.3 5.0 38 555-594 260-297 (475)
461 PLN02934 triacylglycerol lipas 63.7 10 0.00022 41.9 4.8 39 554-594 302-340 (515)
462 KOG2111 Uncharacterized conser 63.6 59 0.0013 33.5 9.7 97 135-239 148-248 (346)
463 PLN02719 triacylglycerol lipas 62.5 10 0.00022 41.9 4.7 40 555-594 275-317 (518)
464 PF02089 Palm_thioest: Palmito 61.9 30 0.00066 35.3 7.6 34 575-608 80-114 (279)
465 KOG0650 WD40 repeat nucleolar 61.8 57 0.0012 36.5 9.9 113 125-251 523-638 (733)
466 TIGR02604 Piru_Ver_Nterm putat 60.9 2.4E+02 0.0052 30.3 15.1 59 170-237 73-142 (367)
467 PF06977 SdiA-regulated: SdiA- 60.7 1.9E+02 0.0042 29.2 15.2 116 169-300 22-148 (248)
468 PLN03037 lipase class 3 family 60.5 12 0.00025 41.5 4.6 38 557-594 298-337 (525)
469 PF05694 SBP56: 56kDa selenium 60.4 31 0.00066 37.5 7.6 64 170-237 313-393 (461)
470 KOG4328 WD40 protein [Function 60.0 2.6E+02 0.0056 30.4 15.3 116 125-252 188-311 (498)
471 COG3204 Uncharacterized protei 60.0 2.1E+02 0.0046 29.4 13.4 153 122-284 127-304 (316)
472 KOG1963 WD40 repeat protein [G 58.3 60 0.0013 37.8 9.8 68 125-202 253-321 (792)
473 PHA02713 hypothetical protein; 58.2 3.4E+02 0.0073 31.2 17.8 189 150-350 320-534 (557)
474 PLN02213 sinapoylglucose-malat 57.8 26 0.00056 36.9 6.7 85 527-613 3-99 (319)
475 KOG0310 Conserved WD40 repeat- 57.5 2.9E+02 0.0064 30.2 19.1 114 124-252 111-227 (487)
476 PRK05579 bifunctional phosphop 56.0 93 0.002 33.9 10.6 81 495-582 116-196 (399)
477 PF11768 DUF3312: Protein of u 55.7 3E+02 0.0065 31.0 14.3 71 169-251 260-330 (545)
478 PF15492 Nbas_N: Neuroblastoma 55.6 17 0.00036 36.8 4.4 38 123-165 43-80 (282)
479 KOG0307 Vesicle coat complex C 55.2 74 0.0016 38.3 10.1 150 125-284 118-275 (1049)
480 KOG1523 Actin-related protein 54.4 1.3E+02 0.0028 31.2 10.3 102 126-237 13-120 (361)
481 PF01083 Cutinase: Cutinase; 54.4 21 0.00045 34.1 4.8 31 575-605 81-117 (179)
482 KOG4569 Predicted lipase [Lipi 54.2 16 0.00036 38.7 4.5 36 557-594 155-190 (336)
483 KOG4283 Transcription-coupled 54.2 2.4E+02 0.0052 29.0 12.0 113 123-245 101-216 (397)
484 PRK13615 lipoprotein LpqB; Pro 52.8 93 0.002 35.5 10.3 79 125-205 418-504 (557)
485 COG3946 VirJ Type IV secretory 52.7 63 0.0014 34.6 8.2 74 517-605 279-356 (456)
486 PF03022 MRJP: Major royal jel 52.0 2.9E+02 0.0063 28.5 18.1 165 126-300 63-278 (287)
487 TIGR02276 beta_rpt_yvtn 40-res 51.7 34 0.00074 23.1 4.4 28 133-164 1-28 (42)
488 PF05787 DUF839: Bacterial pro 51.6 1.3E+02 0.0028 34.2 11.2 21 217-237 501-521 (524)
489 KOG0307 Vesicle coat complex C 51.4 71 0.0015 38.4 9.2 140 103-251 136-285 (1049)
490 KOG1034 Transcriptional repres 50.3 3.2E+02 0.0069 28.5 13.1 204 125-347 137-381 (385)
491 KOG0647 mRNA export protein (c 49.6 3.1E+02 0.0068 28.3 14.8 82 168-260 27-110 (347)
492 KOG2521 Uncharacterized conser 49.6 3.5E+02 0.0076 28.8 14.6 214 495-726 38-291 (350)
493 PRK11138 outer membrane biogen 49.1 3.8E+02 0.0081 29.0 16.0 89 151-252 267-355 (394)
494 KOG0295 WD40 repeat-containing 48.9 3.5E+02 0.0076 28.6 20.5 60 125-189 110-171 (406)
495 KOG2041 WD40 repeat protein [G 48.7 4.9E+02 0.011 30.2 18.1 58 125-187 117-175 (1189)
496 PRK13614 lipoprotein LpqB; Pro 48.6 4.7E+02 0.01 30.0 16.0 122 125-251 384-519 (573)
497 KOG0299 U3 snoRNP-associated p 48.2 4E+02 0.0087 29.1 14.9 71 125-205 144-234 (479)
498 KOG4547 WD40 repeat-containing 48.2 1.6E+02 0.0035 32.9 10.7 115 126-247 147-267 (541)
499 KOG2100 Dipeptidyl aminopeptid 48.1 1.7E+02 0.0036 35.0 11.9 109 129-237 345-457 (755)
500 PF05787 DUF839: Bacterial pro 48.1 4.6E+02 0.01 29.8 16.4 36 170-205 351-401 (524)
No 1
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-101 Score=816.75 Aligned_cols=611 Identities=31% Similarity=0.520 Sum_probs=567.7
Q ss_pred hHHHHhCCCCCCCCCCCeEeCCeEEEEEccCCCeeEEEEEEecCCCcccccCCCCCCCccCCCCCCCcEEEeeccccccc
Q 004839 40 LAWLLSFPLLPSAGAPGDLHHRRLYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAER 119 (728)
Q Consensus 40 ~~~~~~~r~~~~~~~~p~~~g~~~yy~~~~~g~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~ 119 (728)
+..-|++||++++.|+|.++|+|+||+|+..|++|+++||++..+ ...|++|||+|+++++
T Consensus 65 if~Ei~~Rik~dd~Svp~~~~~~~Yy~r~~~g~~y~~~~R~~~~g-------------------~~~eevlLD~n~~A~g 125 (682)
T COG1770 65 IFEEIKGRIKEDDLSVPYRKGPYEYYSRTEEGKEYPIYCRQPDEG-------------------GEGEEVLLDVNKEAEG 125 (682)
T ss_pred HHHHHhhhccCcCCCCccccCCeeEEEEecCCCcceeEEeccCCC-------------------CCceeEeecchhccCc
Confidence 567899999999999999999999999999999999999976643 1148999999999998
Q ss_pred CCceEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCccceeeeEEEecCCCEEEEEEecCCCCcceeEE
Q 004839 120 FGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 199 (728)
Q Consensus 120 ~~~~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~ 199 (728)
++ |++++.+++|||+++|||+.|..|+|++.|.++|+++|+.+.....+....++|++|+++|||++.++..++.+||+
T Consensus 126 ~~-f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~ 204 (682)
T COG1770 126 HD-FFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRLDENHRPDKVWR 204 (682)
T ss_pred cc-ceeeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhcccccceEEecCCCeEEEEEEcCCCCcceEEE
Confidence 87 99999999999999999999999999999999999999988876666688999999999999999999889999999
Q ss_pred EECCCCC-ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCceEEEEeecCCEEE
Q 004839 200 SIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLY 278 (728)
Q Consensus 200 ~~l~t~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~dg~~l~ 278 (728)
|.++++. .+.+||+|.|+.|++++..|.+.+||++..++..++|++++|.+.+...++.+.++..+++|.++|.++.||
T Consensus 205 h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~ 284 (682)
T COG1770 205 HRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFY 284 (682)
T ss_pred EecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEE
Confidence 9999965 889999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred EEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecCCCCCCccee
Q 004839 279 LFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVH 358 (728)
Q Consensus 279 ~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~ 358 (728)
|.+|.++ .||+|++.++ .++++.|+++|++.++..|+++.++.++||+.++.+|.+++.+.+..+++
T Consensus 285 i~sN~~g-----knf~l~~ap~--~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~------ 351 (682)
T COG1770 285 ILSNADG-----KNFKLVRAPV--SADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGE------ 351 (682)
T ss_pred EEecCCC-----cceEEEEccC--CCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCc------
Confidence 9999886 3899999998 45678999999999999999999999999999999999999999876543
Q ss_pred ecccccccccCCCceeeeecCCCccCCCcEEEEEEccCCCCceEEEEECCCCeEEEEEeeccccccccccccCccccccc
Q 004839 359 LKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRILYGTASSATIS 438 (728)
Q Consensus 359 ~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 438 (728)
.+.+.+++..++...+.|..++++.++|.++|+++|.++|.+|+.+++.++|++++++..
T Consensus 352 -----~~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~g--------------- 411 (682)
T COG1770 352 -----ERGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPGG--------------- 411 (682)
T ss_pred -----eeeEEecchhhhccccCCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEeccCCCC---------------
Confidence 234667766555555667888999999999999999999999999999999999988531
Q ss_pred cccccCccccccccCCCCccCCCCCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHH
Q 004839 439 LNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSEL 518 (728)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~ 518 (728)
|+ ++.|.++++++++.||++||++|++.++.+.+++.|++|++||+||.++.+.|+...
T Consensus 412 --------------~d-------p~~Y~s~riwa~a~dgv~VPVSLvyrkd~~~~g~~p~lLygYGaYG~s~~p~Fs~~~ 470 (682)
T COG1770 412 --------------FD-------PEDYVSRRIWATADDGVQVPVSLVYRKDTKLDGSAPLLLYGYGAYGISMDPSFSIAR 470 (682)
T ss_pred --------------CC-------hhHeEEEEEEEEcCCCcEeeEEEEEecccCCCCCCcEEEEEeccccccCCcCcccce
Confidence 23 788999999999999999999999999988889999999999999999999999999
Q ss_pred HHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCC
Q 004839 519 KSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD 598 (728)
Q Consensus 519 ~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~ 598 (728)
..|++||++++++|+||+|+.|+.|+++|+...|.++|.||++|+++|++++++++++|+++|+|+||+++++++++.|+
T Consensus 471 lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~ 550 (682)
T COG1770 471 LSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPD 550 (682)
T ss_pred eeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEeCCcccchhhccCCCCCCCcccccccCCCCCHHHHHHHHccCcccccccCCCCCeEEEEcC-CCCCCCHHHHH
Q 004839 599 LFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSS-FNTRFGVWEAA 677 (728)
Q Consensus 599 ~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sP~~~i~~~~~~P~lli~g~-~D~~Vp~~~~~ 677 (728)
+|+++|+.+||+|++++|+++++|++..+|.|||+|.+++.+++|.+|||+.|+.. ..+|+||+.++ .|+||.+||+.
T Consensus 551 lf~~iiA~VPFVDvltTMlD~slPLT~~E~~EWGNP~d~e~y~yikSYSPYdNV~a-~~YP~ilv~~Gl~D~rV~YwEpA 629 (682)
T COG1770 551 LFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGNPLDPEYYDYIKSYSPYDNVEA-QPYPAILVTTGLNDPRVQYWEPA 629 (682)
T ss_pred hhhheeecCCccchhhhhcCCCCCCCccchhhhCCcCCHHHHHHHhhcCchhcccc-CCCCceEEEccccCCccccchHH
Confidence 99999999999999999999999999999999999999999999999999999998 79998887766 66999999999
Q ss_pred HHHHHHHhCCCCCCCccEEE--EcCCCCCCCc-hhhhHHHHHHHHHHHHHhhc
Q 004839 678 KWVARVRESTIYDPKRPILL--NLTTDIVEEN-RYLQCKESALETAFLIKMME 727 (728)
Q Consensus 678 ~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~-~~~~~~~~~~~~afl~~~l~ 727 (728)
||+++|++.+++. .++++ .|.+||+|.+ +...+++.|.+++|+.+.++
T Consensus 630 KWvAkLR~~~td~--~plLlkt~M~aGHgG~SgRf~~lee~A~eYaF~l~~~~ 680 (682)
T COG1770 630 KWVAKLRELKTDG--NPLLLKTNMDAGHGGASGRFQRLEEIAFEYAFLLKLAG 680 (682)
T ss_pred HHHHHHhhcccCC--CcEEEEecccccCCCCCCchHHHHHHHHHHHHHhhhcc
Confidence 9999999988764 67877 7999999988 99999999999999998875
No 2
>PRK10115 protease 2; Provisional
Probab=100.00 E-value=5.8e-87 Score=763.17 Aligned_cols=615 Identities=26% Similarity=0.414 Sum_probs=528.1
Q ss_pred chhhHHHHhCCCCCCCCCCCeEeCCeEEEEEccCCCeeEEEEEEecCCCcccccCCCCCCCccCCCCCCCcEEEeecccc
Q 004839 37 RWPLAWLLSFPLLPSAGAPGDLHHRRLYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQE 116 (728)
Q Consensus 37 ~~~~~~~~~~r~~~~~~~~p~~~g~~~yy~~~~~g~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~ 116 (728)
+.-|...|+.|++.+++++|.++|+|+||.+...|+++.++||++... ...+.+++|||+|++
T Consensus 58 ~~~l~~~~~~~~~~~~~~~p~~~g~~~y~~~~~~g~~~~~~~r~~~~~-----------------~~~~~~~~llD~n~~ 120 (686)
T PRK10115 58 QDRILKEIIDRIPQREVSAPYIKNGYRYRHIYEPGCEYAIYQRQSAFS-----------------EEWDEWETLLDANKR 120 (686)
T ss_pred HHHHHHHHHhhcccccCCCCEEECCEEEEEEEcCCCccEEEEEecCCC-----------------CCCCCCEEEEcchhh
Confidence 444778889999999999999999999999999999999999986432 011457999999999
Q ss_pred cccCCceEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCccceeeeEEEecCCCEEEEEEecCC-CCcc
Q 004839 117 AERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQN-KRPY 195 (728)
Q Consensus 117 ~~~~~~~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~-~~~~ 195 (728)
+++.+ ++.+..++|||||++|||+.|.+|+|+++|+|+|+++|+.+..........++|++|++.|+|++.++. .++.
T Consensus 121 a~~~~-~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~ 199 (686)
T PRK10115 121 AAHSE-FYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPY 199 (686)
T ss_pred ccCCC-cEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCC
Confidence 87655 999999999999999999999999999999999999998655443333356999999999999988654 4788
Q ss_pred eeEEEECCCCC-ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCceEEEEeecC
Q 004839 196 QIYCSIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHE 274 (728)
Q Consensus 196 ~v~~~~l~t~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~dg 274 (728)
+||+|+++++. ++.+++++.+..+++....+.|++++++.+.+..++++++++++.+.+.++++.++..+..+.+.+.+
T Consensus 200 ~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (686)
T PRK10115 200 QVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQ 279 (686)
T ss_pred EEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCC
Confidence 99999999996 78899998887777777778899999998888888899999965443556777888878888888888
Q ss_pred CEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecCCCCCC
Q 004839 275 GFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGK 354 (728)
Q Consensus 275 ~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~ 354 (728)
+.||+.+|.++. +++|+++++. + .++|+.++++.++..|+++.+++++|++..+++|.++++++++.++.
T Consensus 280 ~~ly~~tn~~~~-----~~~l~~~~~~-~--~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~~-- 349 (686)
T PRK10115 280 HRFYLRSNRHGK-----NFGLYRTRVR-D--EQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTRE-- 349 (686)
T ss_pred CEEEEEEcCCCC-----CceEEEecCC-C--cccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCCc--
Confidence 999999998653 6899999886 3 36899999887778999999999999999999999999999865321
Q ss_pred cceeecccccccccCCCceeeeecCCCccCCCcEEEEEEccCCCCceEEEEECCCCeEEEEEeeccccccccccccCccc
Q 004839 355 GVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRILYGTASS 434 (728)
Q Consensus 355 ~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 434 (728)
...+.++........+.+.+++++.+++.++|+++|+++|.+|+.+++.+.|+..+.+.
T Consensus 350 ---------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~~~~------------ 408 (686)
T PRK10115 350 ---------VIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPG------------ 408 (686)
T ss_pred ---------eEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecCCCC------------
Confidence 12333322211111233445677889999999999999999999998888887655320
Q ss_pred cccccccccCccccccccCCCCccCCCCCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCccc
Q 004839 435 ATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRW 514 (728)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~ 514 (728)
++ +..+.+|++++++.||++||++++++++...+++.|+||++||||+.+..+.|
T Consensus 409 ------------------~~-------~~~~~~e~v~~~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f 463 (686)
T PRK10115 409 ------------------FD-------AANYRSEHLWITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADF 463 (686)
T ss_pred ------------------cC-------ccccEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCc
Confidence 12 45679999999999999999999988765556778999999999999999999
Q ss_pred HHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHH
Q 004839 515 RSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAIN 594 (728)
Q Consensus 515 ~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~ 594 (728)
+...+.|+++||+|+++|+||+||||++|++++...++.++++|+++|++||++++++|++||+|+|+||||+|++++++
T Consensus 464 ~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~ 543 (686)
T PRK10115 464 SFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAIN 543 (686)
T ss_pred cHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCceeEEEEeCCcccchhhccCCCCCCCcccccccCCCCCHHHHHHHHccCcccccccCCCCCeE-EEEcCCCCCCCH
Q 004839 595 CCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAV-LVTSSFNTRFGV 673 (728)
Q Consensus 595 ~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sP~~~i~~~~~~P~l-li~g~~D~~Vp~ 673 (728)
++|++|+|+|+.+|++|+.++|+++++|++..++.|||+|++++.++.+.++||++|+.+ +++|+| ++||.+|+|||+
T Consensus 544 ~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~p~~~~~~~~l~~~SP~~~v~~-~~~P~lLi~~g~~D~RV~~ 622 (686)
T PRK10115 544 QRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTA-QAYPHLLVTTGLHDSQVQY 622 (686)
T ss_pred cChhheeEEEecCCchhHhhhcccCCCCCChhHHHHhCCCCCHHHHHHHHHcCchhccCc-cCCCceeEEecCCCCCcCc
Confidence 999999999999999999999988888988888999999998888899999999999997 899955 559999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCccEEE--EcCCCCCCCc-hhhhHHHHHHHHHHHHHhhcC
Q 004839 674 WEAAKWVARVRESTIYDPKRPILL--NLTTDIVEEN-RYLQCKESALETAFLIKMMES 728 (728)
Q Consensus 674 ~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~-~~~~~~~~~~~~afl~~~l~~ 728 (728)
+|++||+++|++++++. +++++ .+++||++.. +...+++.|++++||.+.|+.
T Consensus 623 ~~~~k~~a~Lr~~~~~~--~~vl~~~~~~~GHg~~~~r~~~~~~~A~~~aFl~~~~~~ 678 (686)
T PRK10115 623 WEPAKWVAKLRELKTDD--HLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLIALAQG 678 (686)
T ss_pred hHHHHHHHHHHhcCCCC--ceEEEEecCCCCCCCCcCHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999998763 66665 5899999766 899999999999999999863
No 3
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-81 Score=658.18 Aligned_cols=635 Identities=40% Similarity=0.602 Sum_probs=532.3
Q ss_pred CCCCCchh-hHHHHhCCCCCCCCCCCeEeCCeEEEEEccCCCeeEEEEEEecCCCc-ccccCCCCCCCccCCCCCCCcEE
Q 004839 32 LSSSPRWP-LAWLLSFPLLPSAGAPGDLHHRRLYYRRVEEGKQYLVLCRRLVSLNE-EFISHKSPAAGFDFTSGKKIEQK 109 (728)
Q Consensus 32 ~~~~~~~~-~~~~~~~r~~~~~~~~p~~~g~~~yy~~~~~g~e~~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 109 (728)
+.+-.+.- |.--|..||.....++|.++|+|+||.+..+|+||++||||....+. .+. ++. +.+ ...+|
T Consensus 54 l~~~e~~~kl~~em~~~i~ye~~~~p~r~G~~yyY~~n~~lkq~vl~~rr~~~~e~~~~l---d~~-----~~~-dd~tV 124 (712)
T KOG2237|consen 54 LEDTETKEKLFSEMTKRIDYEIITPPLRWGPWYYYFYNTGLKQYVLYCRRLLEKEEEVFL---DPN-----ALG-DDGTV 124 (712)
T ss_pred HhccHHHHHHHHHhhhccCccccCCccccCCEEEEEEcCCceehhHHHHhhhhcccceec---CCc-----cCC-CCceE
Confidence 33334444 67788999999999999999999999999999999999998763321 221 111 111 23469
Q ss_pred EeecccccccCCceEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCccceeeeEEEec-CCCEEEEEEe
Q 004839 110 LLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAK-DGQALIYVVT 188 (728)
Q Consensus 110 lld~n~~~~~~~~~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~Wsp-Dg~~l~y~~~ 188 (728)
+||.|++++.++ |+..+..+.|||.++|||..+..|++.+++ |.+++..++.......+++.++|.. ||..|.|...
T Consensus 125 ~Ld~~~~aed~~-Y~~~gls~~spD~~~ia~~~~~~~~e~~~~-v~~~~~~~~~~~~~~~g~~y~~w~~~dg~~l~~~t~ 202 (712)
T KOG2237|consen 125 LLDTNQIAEDFK-YFAYGLSESSPDHKYIAYTKDTEGKELFTV-VIDVKFSGPVWTHDGKGVSYLAWAKQDGEDLLYGTE 202 (712)
T ss_pred EechhhhhhcCC-ceEEeecccCCCceEEEEEEcCCCCcccee-eeeeccCCceeeccCCceEeeeecccCCceeeeeee
Confidence 999999999876 999999899999999999999999999998 9999998877665566889999999 9999999989
Q ss_pred cCCCCcceeEEEECCCCC-ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCc---eEEEEEeCCCCCCCeEE-eeecC
Q 004839 189 DQNKRPYQIYCSIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTS---SKVFLINAADPFSGLTL-IWECE 263 (728)
Q Consensus 189 ~~~~~~~~v~~~~l~t~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~---~~l~~~dl~~~~~~~~~-l~~~~ 263 (728)
++.+|+.+||+|.+|+.+ +|.+++++.|+.+++...-..|+++..+.+.+.+. +.+|.+|+..+...+.. +.++.
T Consensus 203 ~~~~r~hkvy~h~~Gtdq~~Dvl~~~e~d~~~~vf~~~~kD~~~~~i~si~~t~s~~~~vf~~d~~~~~~gl~~~~~~~v 282 (712)
T KOG2237|consen 203 DENNRPHKVYYHTLGTDQSEDVLLYEEKDEPKHVFISETKDSGFYTINSISETCSPVNKVFLCDLSSPSDGLELLILPRV 282 (712)
T ss_pred ccccCcceEEEEecccCCCcceEEEecCCCCeEEEEEEEecCceEEEEEeeccCCccceEEEEecccccCCcchheeecc
Confidence 999999999999999996 89999999999888777777777777777766544 59999999876544553 67777
Q ss_pred CceEEEEeec------CCEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEec
Q 004839 264 GLAHCIVEHH------EGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILRE 337 (728)
Q Consensus 264 ~~~~~~~~~d------g~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~ 337 (728)
.++.++++|. +..+++.+|.+.+ ++++.++++. .++...|+.++.+.+...+++++.++++++++...
T Consensus 283 ~~v~~f~eh~~fi~~~~t~~~~~tn~~~p-----~y~l~r~~~~-~~~~~~W~~v~~e~~~~vl~~~~~~~~~~ll~~~~ 356 (712)
T KOG2237|consen 283 KGVDCFVEHYDFITNEGTEFYFLTNKDAP-----NYYLLRIDVK-EPEESKWETVFAEHEKDVLEDVDMVNDNLLLVCYM 356 (712)
T ss_pred chhhhhhhhhhheeccCcceeeeccCCCC-----ceeEEeeecc-CccccccceeecccchhhhhhhhhhcCceEEEEEe
Confidence 7766655544 4888999988764 6899999998 66678999999988888899999998877777666
Q ss_pred CCeeEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCccCCCcEEEEEEccCCCCceEEEEECCCCeEEEEEe
Q 004839 338 GRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQ 417 (728)
Q Consensus 338 ~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~~~~~l~~ 417 (728)
.....+..+.. .+.+..++.+++|.+.+++.++ +++++.++|.++|+.+|+.+|.||+..++. +
T Consensus 357 ~~l~~i~q~~~---------~l~g~~~~~fpLpv~sv~~~~g---~~~~~~~~f~~sS~l~P~~iy~yDl~~~~~----e 420 (712)
T KOG2237|consen 357 SDLKHILQVRD---------LLDGSLLRSFPLPVGSVSGTSG---DFKSSTIRFQFSSFLTPGSIYDYDLANGKP----E 420 (712)
T ss_pred cCchhhccccc---------cccCceeeeecCCCCccccccc---CCCCceEEEEEeccCCCCeEEEeeccCCCC----C
Confidence 66655443221 1222345678888876665544 778899999999999999999999998854 2
Q ss_pred eccccccccccccCccccccccccccCccccccccCCCCccCCCCCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCcc
Q 004839 418 QNMLRERTRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNP 497 (728)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P 497 (728)
+++..+. +. .-+|.+ .+.|+++++.++|.||++||+++++.++.+..++.|
T Consensus 421 ~~vf~e~-~~---------------------------~lpg~~-~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~k~dg~~P 471 (712)
T KOG2237|consen 421 PSVFREI-TV---------------------------VLPGFD-ASDYVVERIEVSSKDGTKVPMFIVYKKDIKLDGSKP 471 (712)
T ss_pred Ccceeee-cc---------------------------ccCccc-ccceEEEEEEEecCCCCccceEEEEechhhhcCCCc
Confidence 2222210 00 002222 678999999999999999999999988888888999
Q ss_pred EEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCcE
Q 004839 498 GLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKL 577 (728)
Q Consensus 498 ~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri 577 (728)
++||+||||+..+++.|+.....|+++|++.+++|+||+|++|..||+.|....+.|+++|+++|+++|+++|++.|+|+
T Consensus 472 ~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt~~~kL 551 (712)
T KOG2237|consen 472 LLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVENGYTQPSKL 551 (712)
T ss_pred eEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHcCCCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCCCCcccccccCCCCCHHHHHHHHccCcccccccCCC
Q 004839 578 AGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVL 657 (728)
Q Consensus 578 ~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sP~~~i~~~~~ 657 (728)
++.|+|+||.+++++++++|++|+|+|+.+||+|+++++.++..|++...|.+||+|.+.+++-.|..|||++++.++..
T Consensus 552 ~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g~p~~~~~~~~i~~y~pv~~i~~q~~ 631 (712)
T KOG2237|consen 552 AIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWGNPEDFEDLIKISPYSPVDNIKKQVQ 631 (712)
T ss_pred eEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccCChhhhhhhheecccCccCCCchhcc
Confidence 99999999999999999999999999999999999999999999999999999999987777888888999999988666
Q ss_pred CCeEEEEcC-CCCCCCHHHHHHHHHHHHhCCCCCCC--ccEEE--EcCCCCCCCc-hhhhHHHHHHHHHHHHHhhcC
Q 004839 658 YPAVLVTSS-FNTRFGVWEAAKWVARVRESTIYDPK--RPILL--NLTTDIVEEN-RYLQCKESALETAFLIKMMES 728 (728)
Q Consensus 658 ~P~lli~g~-~D~~Vp~~~~~~~~~~L~~~~~~~~~--~~~~~--~~~~gH~~~~-~~~~~~~~~~~~afl~~~l~~ 728 (728)
+|.++|+.+ .|+||+++++.+|+++||..-.+++. ++|++ ++++||+... +.+++++.++.+|||.+.|++
T Consensus 632 YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~~~~~k~~~E~a~~yaFl~K~~~~ 708 (712)
T KOG2237|consen 632 YPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAEKPRFKQIEEAAFRYAFLAKMLNS 708 (712)
T ss_pred CcceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccCCchHHHHHHHHHHHHHHHHHhcC
Confidence 997776655 66999999999999999987655544 78888 8999999877 999999999999999998864
No 4
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-59 Score=492.75 Aligned_cols=576 Identities=25% Similarity=0.302 Sum_probs=426.6
Q ss_pred CCCCCCeEeCCeEEEEEccCCCeeEEEEEEecCCCcccccCCCCCCCccCCCCCCCcEEEeecccccccCCceEEeecee
Q 004839 51 SAGAPGDLHHRRLYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSE 130 (728)
Q Consensus 51 ~~~~~p~~~g~~~yy~~~~~g~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~ 130 (728)
.+.+.|...++++|..-.+.-...- ++|+..-. ......++.++|+|.+++++..+....+.+.+
T Consensus 52 ~~~~~~~~~~~~~ynFw~D~~~p~G-lwr~ttl~--------------syrs~~p~WevLiD~d~Ls~~~g~~v~~~Gas 116 (648)
T COG1505 52 EDIPIPFERGGRYYNFWQDALYPRG-LYRRTTLE--------------TYRSAKPEWEVLIDVDALSADLGDKVALGGAS 116 (648)
T ss_pred cccCcceeccceeEEeeccccCcce-eEEeecce--------------eecccCCCceeecCHHHHhhhcCCcEEEccce
Confidence 3477777888876665444333322 34543211 01122367799999999987644467788888
Q ss_pred eCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCccceeeeEEEecCCCEEEEEEecCCC------C---cceeEEEE
Q 004839 131 VSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNK------R---PYQIYCSI 201 (728)
Q Consensus 131 ~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~------~---~~~v~~~~ 201 (728)
.+||+++++|+.+.+|++...++++|++||+.+... .-....+.|..++ .++|.+..... - -..+++..
T Consensus 117 ~~~~~~R~l~s~S~gG~D~~~~re~Dlet~~fv~~~-~f~~~~~~wld~d-~~~~~~~~~~~e~T~sGy~~~~~~~krg~ 194 (648)
T COG1505 117 VLPDGTRLLYSLSIGGSDAGITREFDLETGEFVEEE-GFKFPGISWLDDD-GVFVSRYWRPKEKTPSGYPRVVKRLKRGK 194 (648)
T ss_pred eCCCCCEEEEEecCCCCcceEEEEEEecccccccCC-CccccceEEecCC-CEEEecccCCcccCccCCchHhhhhhhcc
Confidence 899999999999999999999999999999866553 1122338999988 67676554311 1 12456666
Q ss_pred CCCCC-ceeEEeeecCc-ceEEEEEEcCCCCEEEEEEcCCCc--eEEEEEeCCCCC-CCeEEe-e-ecCCceEEEEeecC
Q 004839 202 IGSTD-EDALLLEESNE-NVYVNIRHTKDFHFVCVHTFSTTS--SKVFLINAADPF-SGLTLI-W-ECEGLAHCIVEHHE 274 (728)
Q Consensus 202 l~t~~-~~~lv~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~--~~l~~~dl~~~~-~~~~~l-~-~~~~~~~~~~~~dg 274 (728)
+..++ .+..++...+- ..+..+.++.|+++++...+-... ..++ +++-+.. .....+ . .+.+. -.++.+.
T Consensus 195 ~f~~~~~dv~V~a~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-l~~p~~~~~~~~~l~~~~r~dw--~~~~~~~ 271 (648)
T COG1505 195 LFEGQEGDVMVNARGDQDPWGFRLVLSEDGDFFMLSLWLGTSGKGLIK-LGLPDKVGYEWGKLVNTLRADW--TFADVDY 271 (648)
T ss_pred cccCCCCceEEecccccCCccceEEEeeccchhhheeeEeccCCCcee-ccCCccccceeeeeeEeecccc--cccCccc
Confidence 77776 66666543321 112334455555554433321111 1222 2221110 000000 0 00000 0111222
Q ss_pred CEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecCCCCCC
Q 004839 275 GFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGK 354 (728)
Q Consensus 275 ~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~ 354 (728)
+.|++.+....+ .+.-..++.+++...++.+...++.+++....+...++.+++...
T Consensus 272 g~l~l~~~e~~~-------------------~g~~~a~~~P~~~~~le~v~tt~~~~va~~l~nv~~~l~v~~~~g---- 328 (648)
T COG1505 272 GLLYLLTDEDLE-------------------LGKVIAEFIPEEEQSLEQVVTTKDKLVAGTLDNVSGRLEVYDLKG---- 328 (648)
T ss_pred ceEEEEehhccc-------------------cCceeEEecCCcccceeeeEEEcCeEEeeeehhccceEEEeccCc----
Confidence 344444333211 111222455566788999999999999999999888888887542
Q ss_pred cceeecccccccccCCCc-eeeeecCCCccCCCcEEEEEEccCCCCceEEEEECCCCeEEEEEeeccccccccccccCcc
Q 004839 355 GVVHLKELHPHFLPLPKY-VSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRILYGTAS 433 (728)
Q Consensus 355 ~~~~~~~~~~~~~~~p~~-~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 433 (728)
+. ...+++|.. ...+. +.+.+++.+.+.++|+++|+.+|+++..+++++.++.+.+
T Consensus 329 --~~-----~~~v~l~~~ga~~~~---~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik~~p~------------- 385 (648)
T COG1505 329 --ER-----IEEVELPPPGALGMG---SADKDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIREQPV------------- 385 (648)
T ss_pred --eE-----eeecccCCccceeec---cCCCCCcEEEEEeecccCCCceEEEecCCceehhhhhccC-------------
Confidence 11 234555443 12222 3467889999999999999999999999998887776544
Q ss_pred ccccccccccCccccccccCCCCccCCCCCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcc
Q 004839 434 SATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKR 513 (728)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~ 513 (728)
.|+ .+.+.+++...+|.||++||+++++ ++.+.+ +.|++|+.|||+.....|.
T Consensus 386 ------------------~FD-------a~~~~veQ~~atSkDGT~IPYFiv~-K~~~~d-~~pTll~aYGGF~vsltP~ 438 (648)
T COG1505 386 ------------------QFD-------ADNYEVEQFFATSKDGTRIPYFIVR-KGAKKD-ENPTLLYAYGGFNISLTPR 438 (648)
T ss_pred ------------------CcC-------ccCceEEEEEEEcCCCccccEEEEe-cCCcCC-CCceEEEeccccccccCCc
Confidence 234 6789999999999999999999999 887767 8999999999999999999
Q ss_pred cHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHH
Q 004839 514 WRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAI 593 (728)
Q Consensus 514 ~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~ 593 (728)
|+.....|+++|.+++++|.||+|+||.+||+++.+.++++.++|++++++.|++++++.|++++|.|+|.||+++..++
T Consensus 439 fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~al 518 (648)
T COG1505 439 FSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAAL 518 (648)
T ss_pred cchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeee
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCceeEEEEeCCcccchhhccCCCCCCCcccccccCCCCCHHHHHHHHccCcccccccCCCCCeEEEEc-CCCCCCC
Q 004839 594 NCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTS-SFNTRFG 672 (728)
Q Consensus 594 ~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sP~~~i~~~~~~P~lli~g-~~D~~Vp 672 (728)
+|+|++|.|+|+.+|++||++ ++.++.+..|..|||+|.++++...+.+|||++|++...++|+.||+. ..|+||.
T Consensus 519 TQrPelfgA~v~evPllDMlR---Yh~l~aG~sW~~EYG~Pd~P~d~~~l~~YSPy~nl~~g~kYP~~LITTs~~DDRVH 595 (648)
T COG1505 519 TQRPELFGAAVCEVPLLDMLR---YHLLTAGSSWIAEYGNPDDPEDRAFLLAYSPYHNLKPGQKYPPTLITTSLHDDRVH 595 (648)
T ss_pred ccChhhhCceeeccchhhhhh---hcccccchhhHhhcCCCCCHHHHHHHHhcCchhcCCccccCCCeEEEccccccccc
Confidence 999999999999999999885 567788889999999999999999999999999999878999766655 4889999
Q ss_pred HHHHHHHHHHHHhCCCCCCCccEEE--EcCCCCCCCc-hhhhHHHHHHHHHHHHHhhc
Q 004839 673 VWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEEN-RYLQCKESALETAFLIKMME 727 (728)
Q Consensus 673 ~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~-~~~~~~~~~~~~afl~~~l~ 727 (728)
|.|+++|+++|++.+ .++++ .-++||++.. ......+.+..++||.+.|+
T Consensus 596 PaHarKfaa~L~e~~-----~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L~ 648 (648)
T COG1505 596 PAHARKFAAKLQEVG-----APVLLREETKGGHGGAAPTAEIARELADLLAFLLRTLG 648 (648)
T ss_pred chHHHHHHHHHHhcC-----CceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhhC
Confidence 999999999999998 35666 5589999877 66778899999999999985
No 5
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-46 Score=426.61 Aligned_cols=526 Identities=17% Similarity=0.177 Sum_probs=361.1
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCccceeeeEEEecCCCEEEEEEecCC----C--------
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQN----K-------- 192 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~----~-------- 192 (728)
....+.|||||+.+++.. ..+....++|+++.. | ........+....|+|+|+.+.+...... .
T Consensus 61 ~~~~~~~spdg~~~~~~~-~~~~~~~~l~l~~~~-g--~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 136 (620)
T COG1506 61 GVSELRWSPDGSVLAFVS-TDGGRVAQLYLVDVG-G--LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDR 136 (620)
T ss_pred cccccccCCCCCEEEEEe-ccCCCcceEEEEecC-C--ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecc
Confidence 356778999999999986 455557889999988 5 11112346778999999999988322110 0
Q ss_pred ----------CcceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCC----ceEEEEEeCCCCCCCeEE
Q 004839 193 ----------RPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT----SSKVFLINAADPFSGLTL 258 (728)
Q Consensus 193 ----------~~~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~----~~~l~~~dl~~~~~~~~~ 258 (728)
+..++|..+..+ .... ..... .......+.++++.++....... ....+.....+ +....
T Consensus 137 ~~~~~~~~g~~~~~l~~~d~~~-~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 210 (620)
T COG1506 137 LPVWFDGRGGERSDLYVVDIES-KLIK--LGLGN-LDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGN--GELES 210 (620)
T ss_pred cceeecCCCCcccceEEEccCc-cccc--ccCCC-CceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCC--CceEE
Confidence 122344444332 1000 01111 11234455666666655544332 12333333333 44555
Q ss_pred eeecCCc-eEEEEeecCCEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeec-C--CC-ceEEEEEeeCCEEEE
Q 004839 259 IWECEGL-AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFID-D--QG-LVVEDVDFCKTHMAL 333 (728)
Q Consensus 259 l~~~~~~-~~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~-~--~~-~~i~~~~~~~~~lv~ 333 (728)
+.+.... ....+..+|+.+++..+..... ...+..++..+.+ . ......... + .+ ..+... ..++.+++
T Consensus 211 ~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~-~~~~~~~~~~~~~-~---~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~ 284 (620)
T COG1506 211 LTPGEGSISKLAFDADGKSIALLGTESDRG-LAEGDFILLLDGE-L---GEVDGDLSSGDDTRGAWAVEGG-LDGDGLLF 284 (620)
T ss_pred EcCCCceeeeeeeCCCCCeeEEeccCCccC-ccccceEEEEecc-c---cccceeeccCCcccCcHHhccc-cCCCcEEE
Confidence 5555433 3345567888788877764421 1122333333311 0 000110011 0 00 111111 34456666
Q ss_pred EEec-CCeeEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCccCCCcEEEEEEccCCCCceEEEEECCCCeE
Q 004839 334 ILRE-GRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKW 412 (728)
Q Consensus 334 ~~~~-~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~~~ 412 (728)
+... .|...+......... ......+... +. + ++.+++.+++.++++..|+++|.++. ++.
T Consensus 285 ~~~~~~g~~~l~~~~~~~~~-----------~~~~~~~~~~--v~-~--f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~ 346 (620)
T COG1506 285 IATDGGGSSPLFRVDDLGGG-----------VEGLSGDDGG--VP-G--FDVDGRKLALAYSSPTEPPEIYLYDR--GEE 346 (620)
T ss_pred EEecCCCceEEEEEeccCCc-----------eeeecCCCce--EE-E--EeeCCCEEEEEecCCCCccceEEEcC--CCc
Confidence 6655 555555554422110 0112222121 11 1 23478999999999999999999987 333
Q ss_pred EEEEeeccccccccccccCccccccccccccCccccccccCCCCccCCCCCCceEEEEEEECCCCcEEEEEEEEcCCCCC
Q 004839 413 NIIQQQNMLRERTRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSPKYKK 492 (728)
Q Consensus 413 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~ 492 (728)
..+...+. .++......++|.+++++.||.+|+++++.|.++.+
T Consensus 347 ~~~~~~~~------------------------------------~~~~~~~~~~~e~~~~~~~dG~~i~~~l~~P~~~~~ 390 (620)
T COG1506 347 AKLTSSNN------------------------------------SGLKKVKLAEPEPVTYKSNDGETIHGWLYKPPGFDP 390 (620)
T ss_pred eEEeeccc------------------------------------ccccccccCCceEEEEEcCCCCEEEEEEecCCCCCC
Confidence 33332211 111225678899999999999999999999999888
Q ss_pred CCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCC
Q 004839 493 ENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIV 572 (728)
Q Consensus 493 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 572 (728)
.+++|+||++||||..+....|....|.|+++||+|+.+|+||+++||++|.++..+.++..+++|+++++++|.+++.+
T Consensus 391 ~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~ 470 (620)
T COG1506 391 RKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLV 470 (620)
T ss_pred CCCCCEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHHHHHhCCCc
Confidence 88899999999999888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCCCCcccccccCCCCCHHHHHHHHccCccccc
Q 004839 573 KEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNI 652 (728)
Q Consensus 573 d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sP~~~i 652 (728)
|++||+|+|+||||||+++++++.| +|+|+|+.+|.+++..++...+..+...+....+.++. +.+.|.+.||+.++
T Consensus 471 d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sp~~~~ 547 (620)
T COG1506 471 DPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGGGPPE--DREKYEDRSPIFYA 547 (620)
T ss_pred ChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHHHhCCCccc--ChHHHHhcChhhhh
Confidence 9999999999999999999999766 99999999999998877655554443322222233432 46788999999999
Q ss_pred ccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCchhhhHHHHHHHHHHHHHhhc
Q 004839 653 QKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 727 (728)
Q Consensus 653 ~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~afl~~~l~ 727 (728)
.+ +++|+|||||..|.|||..|+++|+++|+..|++ ..++++|++||++....++...+...++||.++|+
T Consensus 548 ~~-i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~---~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~~~ 618 (620)
T COG1506 548 DN-IKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKP---VELVVFPDEGHGFSRPENRVKVLKEILDWFKRHLK 618 (620)
T ss_pred cc-cCCCEEEEeecCCccCChHHHHHHHHHHHHcCce---EEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHHhc
Confidence 97 9999999999999999999999999999998864 23333899999998878888888889999999985
No 6
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=100.00 E-value=3.8e-38 Score=346.66 Aligned_cols=344 Identities=30% Similarity=0.432 Sum_probs=274.6
Q ss_pred chhhHHHHhCCCCCCCCCCCeEeCCeEEEEEccCCCeeEEEEEEecCCCcccccCCCCCCCccCCCCCCC-cEEEeeccc
Q 004839 37 RWPLAWLLSFPLLPSAGAPGDLHHRRLYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKI-EQKLLDYNQ 115 (728)
Q Consensus 37 ~~~~~~~~~~r~~~~~~~~p~~~g~~~yy~~~~~g~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lld~n~ 115 (728)
+..+...|+.++..+..++|.+.|+|+||.+..+|++|+++||+.... .++. +++|||+|+
T Consensus 55 ~~~l~~~~~~~~~~~~~~~p~~~g~~~y~~~~~~~~~~~~~~r~~~~~------------------~~~~~~evllD~n~ 116 (414)
T PF02897_consen 55 REKLYEELKARINEDRESVPVRRGGYYYYSRNQGGKNYPVLYRRKTDE------------------EDGPEEEVLLDPNE 116 (414)
T ss_dssp HHHHHHHHHHHCSSSEE---EEETTEEEEEEE-SS-SS-EEEEEETTS-------------------TS-C-EEEEEGGG
T ss_pred HHHHHHHHHhhccCCCccccEEECCeEEEEEEcCCCceEEEEEEeccc------------------CCCCceEEEEcchH
Confidence 455888899999999999999999999999999999999999987541 0133 589999999
Q ss_pred ccccCCceEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCccce-eeeEEEecCCCEEEEEEecCCCC-
Q 004839 116 EAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVR-VSNIAWAKDGQALIYVVTDQNKR- 193 (728)
Q Consensus 116 ~~~~~~~~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~-~~~~~WspDg~~l~y~~~~~~~~- 193 (728)
+++..+ ++.++.+++||||++|||+.+.+|+|.++|+|+|+++|+.+....... ...+.|++||+.|||++.+...+
T Consensus 117 l~~~~~-~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~ 195 (414)
T PF02897_consen 117 LAKDGG-YVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRT 195 (414)
T ss_dssp GSTTSS--EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS
T ss_pred hhccCc-eEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCccccc
Confidence 998765 788889999999999999999999999999999999998776544332 33499999999999999887666
Q ss_pred -----cceeEEEECCCCC-ceeEEeeecCcce-EEEEEEcCCCCEEEEEEcCCCc-eEEEEEeCCCC---CCCeEEeeec
Q 004839 194 -----PYQIYCSIIGSTD-EDALLLEESNENV-YVNIRHTKDFHFVCVHTFSTTS-SKVFLINAADP---FSGLTLIWEC 262 (728)
Q Consensus 194 -----~~~v~~~~l~t~~-~~~lv~~~~~~~~-~~~~~~SpDg~~l~~~~~~~~~-~~l~~~dl~~~---~~~~~~l~~~ 262 (728)
+.+||+|+++++. ++.+||++.+..+ ++++.+|+||++|++.+.+..+ +++|++|+.+. ...++++.++
T Consensus 196 ~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~ 275 (414)
T PF02897_consen 196 SDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR 275 (414)
T ss_dssp -CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES
T ss_pred ccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC
Confidence 8899999999997 6789999999888 8899999999999999998888 99999999873 4578999999
Q ss_pred CCceEEEEeecCCEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCe-EEeecCCCceEEEEEeeCCEEEEEEecCCee
Q 004839 263 EGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWE-SVFIDDQGLVVEDVDFCKTHMALILREGRTY 341 (728)
Q Consensus 263 ~~~~~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~ 341 (728)
..+..+.+.+.++.||+++|.+.. +++|++++++ ++....|. .++++.++..|+++..++++||+..++++.+
T Consensus 276 ~~~~~~~v~~~~~~~yi~Tn~~a~-----~~~l~~~~l~-~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~ 349 (414)
T PF02897_consen 276 EDGVEYYVDHHGDRLYILTNDDAP-----NGRLVAVDLA-DPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSS 349 (414)
T ss_dssp SSS-EEEEEEETTEEEEEE-TT-T-----T-EEEEEETT-STSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEE
T ss_pred CCceEEEEEccCCEEEEeeCCCCC-----CcEEEEeccc-ccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCcc
Confidence 999999999999999999997653 6999999998 66555677 6666666678999999999999999999999
Q ss_pred EEEEEecC-CCCCCcceeecccccccccCCCceeeeecCCCccCCCcEEEEEEccCCCCceEEEEECCCCeEEEEEee
Q 004839 342 RLCSVSLP-LPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQ 418 (728)
Q Consensus 342 ~l~~~~l~-~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~~~~~l~~~ 418 (728)
+|.++++. +. ....+++|... ++. +.+.+++++.++|.++|+++|+.+|.+|+.+++.++++++
T Consensus 350 ~l~v~~~~~~~-----------~~~~~~~p~~g-~v~-~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k~~ 414 (414)
T PF02897_consen 350 RLRVYDLDDGK-----------ESREIPLPEAG-SVS-GVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLKQQ 414 (414)
T ss_dssp EEEEEETT-TE-----------EEEEEESSSSS-EEE-EEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEEE-
T ss_pred EEEEEECCCCc-----------EEeeecCCcce-EEe-ccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEEeC
Confidence 99999986 21 12356666542 222 3455788999999999999999999999999999988763
No 7
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-33 Score=296.29 Aligned_cols=298 Identities=19% Similarity=0.251 Sum_probs=234.9
Q ss_pred CCCcEEEEEEccCCCCceEEEEECCCCeEEEEEeeccccccccccccCccccccccccccCccccccccCCCCccCCCCC
Q 004839 384 YYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSE 463 (728)
Q Consensus 384 ~~~~~~~~~~ss~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (728)
.+-+.++..++|...|+++..+.+..++-..+..+..+. + ++.+... + +++
T Consensus 559 ~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~~l~~q~~~~---~----------~l~~~~~-~---------------~Pd 609 (867)
T KOG2281|consen 559 QQCDHFVSYYSSVGSPPCVSLYSLSWPENDPLPKQVSFW---A----------ILVSGAP-P---------------PPD 609 (867)
T ss_pred hhhhhHhhhhhcCCCCceEEEEeccCCccCcccchhhHH---H----------HHHhcCC-C---------------CCc
Confidence 344557888999999999999988776543333222110 1 1111111 1 155
Q ss_pred CceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCc-CcccH----HHHHHHHHCCeEEEEEcCCCCCC
Q 004839 464 FYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELL-DKRWR----SELKSLLDRGWVVAFADVRGGGG 538 (728)
Q Consensus 464 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~-~~~~~----~~~~~l~~~Gy~v~~~d~RG~g~ 538 (728)
....|.+.|.+.-|..+.+.+++|.++++++|+|+|+++||||+.+. ..+|. ...+.||++||+|++.|-||+-.
T Consensus 610 y~p~eif~fqs~tg~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsfkgi~ylR~~~LaslGy~Vv~IDnRGS~h 689 (867)
T KOG2281|consen 610 YVPPEIFSFQSKTGLTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSFKGIQYLRFCRLASLGYVVVFIDNRGSAH 689 (867)
T ss_pred cCChhheeeecCCCcEEEEEEEccccCCCCCCCceEEEEcCCCceEEeeccccceehhhhhhhhhcceEEEEEcCCCccc
Confidence 66668899999889999999999999999999999999999999764 34453 34588999999999999999999
Q ss_pred CCCccccccccCCCCCcHHHHHHHHHHHHHc-CCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhcc
Q 004839 539 GGKKWHHDGRRTKKLNSIKDFISCARFLIEK-EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLL 617 (728)
Q Consensus 539 ~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~ 617 (728)
.|.+|....+...|.-.++|.++++++|+++ |++|.+||+|.||||||||++++++++|++|+++|+.+|+.+|.-
T Consensus 690 RGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapVT~W~~--- 766 (867)
T KOG2281|consen 690 RGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPVTDWRL--- 766 (867)
T ss_pred cchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcCcceeeEEeccCcceeeee---
Confidence 9999999999999999999999999999998 599999999999999999999999999999999999999999863
Q ss_pred CCCCCCCcccccc--cCCCCCHHHHHHHHccCcccccccCCCCC--eEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCc
Q 004839 618 YPILPLIAADYEE--FGYPGDIDDFHAIRNYSPYDNIQKDVLYP--AVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKR 693 (728)
Q Consensus 618 ~~~~~~~~~~~~~--~g~p~~~~~~~~~~~~sP~~~i~~~~~~P--~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~ 693 (728)
+.+ .|.| +|.|... .+.|.+-|-+.++.+.-.-| +||+||-.|..|.+.+...++.+|.++|++ -
T Consensus 767 YDT------gYTERYMg~P~~n--E~gY~agSV~~~VeklpdepnRLlLvHGliDENVHF~Hts~Lvs~lvkagKp---y 835 (867)
T KOG2281|consen 767 YDT------GYTERYMGYPDNN--EHGYGAGSVAGHVEKLPDEPNRLLLVHGLIDENVHFAHTSRLVSALVKAGKP---Y 835 (867)
T ss_pred ecc------cchhhhcCCCccc--hhcccchhHHHHHhhCCCCCceEEEEecccccchhhhhHHHHHHHHHhCCCc---e
Confidence 222 1222 4777542 23455666666665433333 799999999999999999999999999965 2
Q ss_pred cEEEEcCCCCCCCchhhhHHHHHHHHHHHHH
Q 004839 694 PILLNLTTDIVEENRYLQCKESALETAFLIK 724 (728)
Q Consensus 694 ~~~~~~~~gH~~~~~~~~~~~~~~~~afl~~ 724 (728)
.+.+||++-|+....+..+-..++.+.||.+
T Consensus 836 eL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 836 ELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred EEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 4444999999987777777777888899875
No 8
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-29 Score=286.00 Aligned_cols=238 Identities=19% Similarity=0.254 Sum_probs=196.1
Q ss_pred CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCc-ccH--HHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCC
Q 004839 476 DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDK-RWR--SELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKK 552 (728)
Q Consensus 476 dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~-~~~--~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~ 552 (728)
||....+.++.|+++.+.+++|+||++||||+++.-. .|. .....+..+|++|+.+|+||+|++|..+..+..+..|
T Consensus 506 ~~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG 585 (755)
T KOG2100|consen 506 DGITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLG 585 (755)
T ss_pred ccEEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcC
Confidence 8999999999999999888999999999999854322 222 2334567799999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCC-CceeEEEEeCCcccchhhccCCCCCCCcccccc-
Q 004839 553 LNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCP-DLFRAVVLEVPFLDATNTLLYPILPLIAADYEE- 630 (728)
Q Consensus 553 ~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p-~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~- 630 (728)
..+++|.+.+++++++.+++|++||+|+|+||||||++.++...| +.|+|+|+.+|++|+. +. +... -++
T Consensus 586 ~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~-~y-ds~~------tery 657 (755)
T KOG2100|consen 586 DVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL-YY-DSTY------TERY 657 (755)
T ss_pred CcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-ee-cccc------cHhh
Confidence 999999999999999999999999999999999999999999887 8999999999999998 22 2211 122
Q ss_pred cCCCCCHHHHHHHHccCcccccccCCCCCe-EEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCchh
Q 004839 631 FGYPGDIDDFHAIRNYSPYDNIQKDVLYPA-VLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRY 709 (728)
Q Consensus 631 ~g~p~~~~~~~~~~~~sP~~~i~~~~~~P~-lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~ 709 (728)
.|.|.+. ...+.+.+|..++.. ++.|. ||+||..|++|+++|+.+++++|+.+|++. .++.|+++.|++..+.
T Consensus 658 mg~p~~~--~~~y~e~~~~~~~~~-~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~~---~~~vypde~H~is~~~ 731 (755)
T KOG2100|consen 658 MGLPSEN--DKGYEESSVSSPANN-IKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGVPF---RLLVYPDENHGISYVE 731 (755)
T ss_pred cCCCccc--cchhhhccccchhhh-hccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCce---EEEEeCCCCccccccc
Confidence 3667542 223677788887776 77776 999999999999999999999999999762 2233899999987755
Q ss_pred hhHHHHHHHHHHHHHhhc
Q 004839 710 LQCKESALETAFLIKMME 727 (728)
Q Consensus 710 ~~~~~~~~~~afl~~~l~ 727 (728)
........+..||...++
T Consensus 732 ~~~~~~~~~~~~~~~~~~ 749 (755)
T KOG2100|consen 732 VISHLYEKLDRFLRDCFG 749 (755)
T ss_pred chHHHHHHHHHHHHHHcC
Confidence 444456667888886654
No 9
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.98 E-value=2.5e-32 Score=272.19 Aligned_cols=210 Identities=20% Similarity=0.267 Sum_probs=170.0
Q ss_pred cccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHH
Q 004839 512 KRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAA 591 (728)
Q Consensus 512 ~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~ 591 (728)
++|+...+.|+++||+|+.+|+||+++||.+|+..+...++...++|+++++++|++++.+|++||+|+|+|+||+++++
T Consensus 1 ~~f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~ 80 (213)
T PF00326_consen 1 PSFNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALL 80 (213)
T ss_dssp ---SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHH
T ss_pred CeeeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccch
Confidence 35777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCceeEEEEeCCcccchhhccCCCCCCCcccccccCCCCCHHHHHHHHccCccccccc-CCCCCeEEEEcCCCCC
Q 004839 592 AINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQK-DVLYPAVLVTSSFNTR 670 (728)
Q Consensus 592 ~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sP~~~i~~-~~~~P~lli~g~~D~~ 670 (728)
+++++|++|+|+|+.+|++|+..+...... +...++.+++.++. ..+.+...||+.++.+ .++.|+||+||..|.+
T Consensus 81 ~~~~~~~~f~a~v~~~g~~d~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~P~li~hG~~D~~ 157 (213)
T PF00326_consen 81 AATQHPDRFKAAVAGAGVSDLFSYYGTTDI-YTKAEYLEYGDPWD--NPEFYRELSPISPADNVQIKPPVLIIHGENDPR 157 (213)
T ss_dssp HHHHTCCGSSEEEEESE-SSTTCSBHHTCC-HHHGHHHHHSSTTT--SHHHHHHHHHGGGGGGCGGGSEEEEEEETTBSS
T ss_pred hhcccceeeeeeeccceecchhcccccccc-cccccccccCccch--hhhhhhhhccccccccccCCCCEEEEccCCCCc
Confidence 999999999999999999999876544333 22334566777743 2333444555554442 1578999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCchhhhHHHHHHHHHHHHHhhc
Q 004839 671 FGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 727 (728)
Q Consensus 671 Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~afl~~~l~ 727 (728)
||+.++.+++++|++++++ ..+++++++||++.............++||.++|+
T Consensus 158 Vp~~~s~~~~~~L~~~g~~---~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~ 211 (213)
T PF00326_consen 158 VPPSQSLRLYNALRKAGKP---VELLIFPGEGHGFGNPENRRDWYERILDFFDKYLK 211 (213)
T ss_dssp STTHHHHHHHHHHHHTTSS---EEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHhcCCC---EEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcC
Confidence 9999999999999999964 23333899999887766666888999999999985
No 10
>PRK10566 esterase; Provisional
Probab=99.85 E-value=3.8e-20 Score=189.16 Aligned_cols=229 Identities=13% Similarity=0.117 Sum_probs=149.7
Q ss_pred EEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCcccc-cccc--CCCCCc
Q 004839 479 SVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHH-DGRR--TKKLNS 555 (728)
Q Consensus 479 ~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~-~~~~--~~~~~~ 555 (728)
.+....+.|.+ ..+++.|+||++||..+.. ..|....+.|+++||.|+++|+||+|........ .... ......
T Consensus 11 ~~~~~~~~p~~-~~~~~~p~vv~~HG~~~~~--~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~ 87 (249)
T PRK10566 11 GIEVLHAFPAG-QRDTPLPTVFFYHGFTSSK--LVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQN 87 (249)
T ss_pred CcceEEEcCCC-CCCCCCCEEEEeCCCCccc--chHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHH
Confidence 34455667764 2235679999999975543 3466778999999999999999998742111000 0000 001134
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEE-eCCcccchhhccCCCCCCCcccccccCCC
Q 004839 556 IKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVL-EVPFLDATNTLLYPILPLIAADYEEFGYP 634 (728)
Q Consensus 556 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~-~~p~~d~~~~~~~~~~~~~~~~~~~~g~p 634 (728)
.+|+.++++++.+++.+|++||+++|+|+||++++.++.++|++.++++. ..+..........+.... ..+
T Consensus 88 ~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 159 (249)
T PRK10566 88 MQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYFTSLARTLFPPLIP--------ETA 159 (249)
T ss_pred HHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcHHHHHHHHHhcccccc--------ccc
Confidence 67888899999998889999999999999999999999988876544332 222221110000000000 001
Q ss_pred CC----HHHHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEE--EcCCCCCCCch
Q 004839 635 GD----IDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEENR 708 (728)
Q Consensus 635 ~~----~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~~ 708 (728)
.. .+....+..+++...+.+..+.|+|++||..|..||+.++++++++|+.++++ ..+.+ ++++||....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~---~~~~~~~~~~~~H~~~~- 235 (249)
T PRK10566 160 AQQAEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLD---KNLTCLWEPGVRHRITP- 235 (249)
T ss_pred ccHHHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCC---cceEEEecCCCCCccCH-
Confidence 11 11122344556655565522689999999999999999999999999998854 12333 8999998642
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 004839 709 YLQCKESALETAFLIKMM 726 (728)
Q Consensus 709 ~~~~~~~~~~~afl~~~l 726 (728)
.......+||.++|
T Consensus 236 ----~~~~~~~~fl~~~~ 249 (249)
T PRK10566 236 ----EALDAGVAFFRQHL 249 (249)
T ss_pred ----HHHHHHHHHHHhhC
Confidence 23566789999875
No 11
>PRK13604 luxD acyl transferase; Provisional
Probab=99.85 E-value=9e-20 Score=185.29 Aligned_cols=223 Identities=12% Similarity=0.048 Sum_probs=156.1
Q ss_pred EEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCC-CCCCCcccc
Q 004839 467 CEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGG-GGGGKKWHH 545 (728)
Q Consensus 467 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~-g~~G~~~~~ 545 (728)
+....+.+.||.++.+|+..|++. ...+.|+||++||-.+.. ..|...+.+|+++||+|+.+|+||+ |+++.++.+
T Consensus 9 ~~~~~~~~~dG~~L~Gwl~~P~~~-~~~~~~~vIi~HGf~~~~--~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~ 85 (307)
T PRK13604 9 TIDHVICLENGQSIRVWETLPKEN-SPKKNNTILIASGFARRM--DHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDE 85 (307)
T ss_pred chhheEEcCCCCEEEEEEEcCccc-CCCCCCEEEEeCCCCCCh--HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccc
Confidence 344457788999999999999753 245678999999854432 3477788999999999999999987 777666654
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccC------C
Q 004839 546 DGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLY------P 619 (728)
Q Consensus 546 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~------~ 619 (728)
..... ...|+.++++|+.++ +.++|+++|+||||.++..++.. + .++++|+.+|+.++...... .
T Consensus 86 ~t~s~----g~~Dl~aaid~lk~~---~~~~I~LiG~SmGgava~~~A~~-~-~v~~lI~~sp~~~l~d~l~~~~~~~~~ 156 (307)
T PRK13604 86 FTMSI----GKNSLLTVVDWLNTR---GINNLGLIAASLSARIAYEVINE-I-DLSFLITAVGVVNLRDTLERALGYDYL 156 (307)
T ss_pred Ccccc----cHHHHHHHHHHHHhc---CCCceEEEEECHHHHHHHHHhcC-C-CCCEEEEcCCcccHHHHHHHhhhcccc
Confidence 32222 369999999999876 34689999999999998777663 3 38999999999997643321 0
Q ss_pred CCCCCcc-ccccc-CCCCC-HHHHHHHH------ccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCC
Q 004839 620 ILPLIAA-DYEEF-GYPGD-IDDFHAIR------NYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYD 690 (728)
Q Consensus 620 ~~~~~~~-~~~~~-g~p~~-~~~~~~~~------~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~ 690 (728)
.+|.... ....+ |.+.. ....+... ..+|+..+.+ ++.|+|+|||..|+.||+.++++++++++...
T Consensus 157 ~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~-l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s~~--- 232 (307)
T PRK13604 157 SLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKG-LDIPFIAFTANNDSWVKQSEVIDLLDSIRSEQ--- 232 (307)
T ss_pred cCcccccccccccccccccHHHHHHHHHhcCccccccHHHHHhh-cCCCEEEEEcCCCCccCHHHHHHHHHHhccCC---
Confidence 0111000 00001 11111 11122221 2355577776 78999999999999999999999999987533
Q ss_pred CCccEEEEcCCCCCCCc
Q 004839 691 PKRPILLNLTTDIVEEN 707 (728)
Q Consensus 691 ~~~~~~~~~~~gH~~~~ 707 (728)
+.+..+++++|.+..
T Consensus 233 --kkl~~i~Ga~H~l~~ 247 (307)
T PRK13604 233 --CKLYSLIGSSHDLGE 247 (307)
T ss_pred --cEEEEeCCCccccCc
Confidence 233348999998755
No 12
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.82 E-value=1.1e-18 Score=189.69 Aligned_cols=241 Identities=14% Similarity=0.053 Sum_probs=157.8
Q ss_pred CceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCcc
Q 004839 464 FYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKW 543 (728)
Q Consensus 464 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~ 543 (728)
.+..+.+.++..||..|+++++.|+. +++.|+||+. ||.++.....|....+.|+++||+|+++|+||+|.... +
T Consensus 165 ~~~~e~v~i~~~~g~~l~g~l~~P~~---~~~~P~Vli~-gG~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~~-~ 239 (414)
T PRK05077 165 PGELKELEFPIPGGGPITGFLHLPKG---DGPFPTVLVC-GGLDSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSSK-W 239 (414)
T ss_pred CCceEEEEEEcCCCcEEEEEEEECCC---CCCccEEEEe-CCcccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCCC-C
Confidence 34678999999999899999998873 3567887765 45554333445666788999999999999999986532 1
Q ss_pred ccccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhc--cCCCC
Q 004839 544 HHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL--LYPIL 621 (728)
Q Consensus 544 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~--~~~~~ 621 (728)
. ..........+++++|.+.+.+|++||+++|+|+||++++.++..+|++++++|+.+|+++-.... .....
T Consensus 240 ~------~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~~~~ 313 (414)
T PRK05077 240 K------LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQQQV 313 (414)
T ss_pred C------ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhhhhc
Confidence 0 011122233578899999999999999999999999999999998899999999999987521100 00111
Q ss_pred CCCcc-cc-cccCCCC-C-HHHHHHHHccCccc--ccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccE
Q 004839 622 PLIAA-DY-EEFGYPG-D-IDDFHAIRNYSPYD--NIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPI 695 (728)
Q Consensus 622 ~~~~~-~~-~~~g~p~-~-~~~~~~~~~~sP~~--~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~ 695 (728)
|.... .. ..+|.+. + ......+..++... .+..+++.|+|+|+|..|..||+.++..+.+..... +.+
T Consensus 314 p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~~~------~l~ 387 (414)
T PRK05077 314 PEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASSSADG------KLL 387 (414)
T ss_pred hHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHhCCCC------eEE
Confidence 10000 00 1123321 1 11223333444221 122238899999999999999999999887666432 233
Q ss_pred EEEcCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 004839 696 LLNLTTDIVEENRYLQCKESALETAFLIKMM 726 (728)
Q Consensus 696 ~~~~~~gH~~~~~~~~~~~~~~~~afl~~~l 726 (728)
. .++. |... ...+....+.+||.++|
T Consensus 388 ~-i~~~-~~~e---~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 388 E-IPFK-PVYR---NFDKALQEISDWLEDRL 413 (414)
T ss_pred E-ccCC-CccC---CHHHHHHHHHHHHHHHh
Confidence 3 4555 3222 22333455679999887
No 13
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.81 E-value=3.6e-18 Score=182.20 Aligned_cols=252 Identities=13% Similarity=0.080 Sum_probs=160.3
Q ss_pred CceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCcc
Q 004839 464 FYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKW 543 (728)
Q Consensus 464 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~ 543 (728)
....+...+.+.||.+|++....|.+. ....|+||++||..... ...|......|+++||.|+.+|+||+|.+...
T Consensus 29 ~~~~~~~~~~~~dg~~l~~~~~~~~~~--~~~~~~VvllHG~~~~~-~~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~~~- 104 (330)
T PLN02298 29 GIKGSKSFFTSPRGLSLFTRSWLPSSS--SPPRALIFMVHGYGNDI-SWTFQSTAIFLAQMGFACFALDLEGHGRSEGL- 104 (330)
T ss_pred CCccccceEEcCCCCEEEEEEEecCCC--CCCceEEEEEcCCCCCc-ceehhHHHHHHHhCCCEEEEecCCCCCCCCCc-
Confidence 345566778889999999877776542 13468999999974332 23445566789999999999999999976321
Q ss_pred ccccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCC----
Q 004839 544 HHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYP---- 619 (728)
Q Consensus 544 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~---- 619 (728)
.+.........+|+.+++++|......+..+++++|+||||.+++.++.++|++++++|+.+|+.++...+...
T Consensus 105 --~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~ 182 (330)
T PLN02298 105 --RAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIRPPWPIP 182 (330)
T ss_pred --cccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccCCchHHH
Confidence 01001111246788888888876543445689999999999999999999999999999999976543211000
Q ss_pred --------CCCCCc-ccccc-cCCCCCHHHHHHHHccCcc----------------------cccccCCCCCeEEEEcCC
Q 004839 620 --------ILPLIA-ADYEE-FGYPGDIDDFHAIRNYSPY----------------------DNIQKDVLYPAVLVTSSF 667 (728)
Q Consensus 620 --------~~~~~~-~~~~~-~g~p~~~~~~~~~~~~sP~----------------------~~i~~~~~~P~lli~g~~ 667 (728)
..+... ..... ............+...+|. ..+.. ++.|+|+|||..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~PvLii~G~~ 261 (330)
T PLN02298 183 QILTFVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKD-VSIPFIVLHGSA 261 (330)
T ss_pred HHHHHHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhh-cCCCEEEEecCC
Confidence 000000 00000 0000000000111111111 22334 889999999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCc--hhhh-HHHHHHHHHHHHHhhc
Q 004839 668 NTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN--RYLQ-CKESALETAFLIKMME 727 (728)
Q Consensus 668 D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~--~~~~-~~~~~~~~afl~~~l~ 727 (728)
|..||+.++++++++++..+ ..+.+++++||.... .... -.......+||.++++
T Consensus 262 D~ivp~~~~~~l~~~i~~~~-----~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~ 319 (330)
T PLN02298 262 DVVTDPDVSRALYEEAKSED-----KTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCT 319 (330)
T ss_pred CCCCCHHHHHHHHHHhccCC-----ceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999987544 233347899998543 2222 2234456899998874
No 14
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.80 E-value=8.3e-19 Score=168.31 Aligned_cols=230 Identities=17% Similarity=0.154 Sum_probs=167.8
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCC
Q 004839 462 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGK 541 (728)
Q Consensus 462 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~ 541 (728)
...+++-.++|++.+|.+|.+|++.|+.. +++.|+||..||-.+.. .+......|+..||+|+.+|.||.|++.+
T Consensus 51 ~~~ve~ydvTf~g~~g~rI~gwlvlP~~~--~~~~P~vV~fhGY~g~~---g~~~~~l~wa~~Gyavf~MdvRGQg~~~~ 125 (321)
T COG3458 51 LPRVEVYDVTFTGYGGARIKGWLVLPRHE--KGKLPAVVQFHGYGGRG---GEWHDMLHWAVAGYAVFVMDVRGQGSSSQ 125 (321)
T ss_pred CCceEEEEEEEeccCCceEEEEEEeeccc--CCccceEEEEeeccCCC---CCccccccccccceeEEEEecccCCCccc
Confidence 45678999999999999999999999863 37899999999732222 12334567888999999999999998733
Q ss_pred c------------cccccccC-----CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEE
Q 004839 542 K------------WHHDGRRT-----KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVV 604 (728)
Q Consensus 542 ~------------~~~~~~~~-----~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v 604 (728)
+ |...+..+ .-...+.|...+++-+.....+|.+||++.|+|.||.+++++++.. .++++++
T Consensus 126 dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~-~rik~~~ 204 (321)
T COG3458 126 DTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALD-PRIKAVV 204 (321)
T ss_pred cCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcC-hhhhccc
Confidence 1 11111111 1134689999999999999999999999999999999999999964 5899999
Q ss_pred EeCCcccchhhccCCCCCCCcccccc------cCCCCCHHHHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHH
Q 004839 605 LEVPFLDATNTLLYPILPLIAADYEE------FGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAK 678 (728)
Q Consensus 605 ~~~p~~d~~~~~~~~~~~~~~~~~~~------~g~p~~~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~ 678 (728)
+.+|++.-...... + .+...|.| ...|.+.+.++.+.-++-.+.+. +++.|+|+..|-.|+.|||.-..+
T Consensus 205 ~~~Pfl~df~r~i~--~-~~~~~ydei~~y~k~h~~~e~~v~~TL~yfD~~n~A~-RiK~pvL~svgL~D~vcpPstqFA 280 (321)
T COG3458 205 ADYPFLSDFPRAIE--L-ATEGPYDEIQTYFKRHDPKEAEVFETLSYFDIVNLAA-RIKVPVLMSVGLMDPVCPPSTQFA 280 (321)
T ss_pred ccccccccchhhee--e-cccCcHHHHHHHHHhcCchHHHHHHHHhhhhhhhHHH-hhccceEEeecccCCCCCChhhHH
Confidence 99998764432211 1 11112222 23444445566555555444444 499999999999999999999999
Q ss_pred HHHHHHhCCCCCCCccEEEEcCCCCCCCc
Q 004839 679 WVARVRESTIYDPKRPILLNLTTDIVEEN 707 (728)
Q Consensus 679 ~~~~L~~~~~~~~~~~~~~~~~~gH~~~~ 707 (728)
++++|...+ .+.+|+.-+|....
T Consensus 281 ~yN~l~~~K------~i~iy~~~aHe~~p 303 (321)
T COG3458 281 AYNALTTSK------TIEIYPYFAHEGGP 303 (321)
T ss_pred HhhcccCCc------eEEEeeccccccCc
Confidence 999997543 45556766687544
No 15
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.80 E-value=9.8e-19 Score=182.31 Aligned_cols=247 Identities=18% Similarity=0.196 Sum_probs=160.4
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCC
Q 004839 462 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGK 541 (728)
Q Consensus 462 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~ 541 (728)
...+.+..+.|.+.+|..|.++++.|++. +++.|+||.+||..+.. .. ......++.+||+|+.+|.||.|+...
T Consensus 51 ~~~~~vy~v~f~s~~g~~V~g~l~~P~~~--~~~~Pavv~~hGyg~~~--~~-~~~~~~~a~~G~~vl~~d~rGqg~~~~ 125 (320)
T PF05448_consen 51 TPGVEVYDVSFESFDGSRVYGWLYRPKNA--KGKLPAVVQFHGYGGRS--GD-PFDLLPWAAAGYAVLAMDVRGQGGRSP 125 (320)
T ss_dssp BSSEEEEEEEEEEGGGEEEEEEEEEES-S--SSSEEEEEEE--TT--G--GG-HHHHHHHHHTT-EEEEE--TTTSSSS-
T ss_pred CCCEEEEEEEEEccCCCEEEEEEEecCCC--CCCcCEEEEecCCCCCC--CC-cccccccccCCeEEEEecCCCCCCCCC
Confidence 35678899999999999999999999853 47899999999754331 11 223456899999999999999995433
Q ss_pred ccccc------cccCCCC----------CcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEE
Q 004839 542 KWHHD------GRRTKKL----------NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVL 605 (728)
Q Consensus 542 ~~~~~------~~~~~~~----------~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~ 605 (728)
..... +....+. ..+.|.+.++++|.+++.+|++||+++|.|.||.+++++++..| +++++++
T Consensus 126 d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~~ 204 (320)
T PF05448_consen 126 DYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAAA 204 (320)
T ss_dssp B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEEE
T ss_pred CccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEEe
Confidence 32211 1111111 24689999999999999999999999999999999999999765 7999999
Q ss_pred eCCcccc-hhhcc-CC-CCCCCc-ccccccCCC---CCHHHHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHH
Q 004839 606 EVPFLDA-TNTLL-YP-ILPLIA-ADYEEFGYP---GDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAK 678 (728)
Q Consensus 606 ~~p~~d~-~~~~~-~~-~~~~~~-~~~~~~g~p---~~~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~ 678 (728)
.+|++.- ...+. .. ..+... ..|..+.++ ..++.++.+.-++..+.+.. +++|+++-.|-.|+.||+.-..+
T Consensus 205 ~vP~l~d~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~r-i~~pvl~~~gl~D~~cPP~t~fA 283 (320)
T PF05448_consen 205 DVPFLCDFRRALELRADEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARR-IKCPVLFSVGLQDPVCPPSTQFA 283 (320)
T ss_dssp ESESSSSHHHHHHHT--STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG---SEEEEEEETT-SSS-HHHHHH
T ss_pred cCCCccchhhhhhcCCccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHH-cCCCEEEEEecCCCCCCchhHHH
Confidence 9997643 32221 11 222211 112222222 22345666777777777776 99999999999999999999999
Q ss_pred HHHHHHhCCCCCCCccEEEEcCCCCCCCchhhhHHHHHHHHHHHHHh
Q 004839 679 WVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKM 725 (728)
Q Consensus 679 ~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~afl~~~ 725 (728)
.+++|... +.+.+|+..||....... ....++||.+|
T Consensus 284 ~yN~i~~~------K~l~vyp~~~He~~~~~~----~~~~~~~l~~~ 320 (320)
T PF05448_consen 284 AYNAIPGP------KELVVYPEYGHEYGPEFQ----EDKQLNFLKEH 320 (320)
T ss_dssp HHCC--SS------EEEEEETT--SSTTHHHH----HHHHHHHHHH-
T ss_pred HHhccCCC------eeEEeccCcCCCchhhHH----HHHHHHHHhcC
Confidence 99999753 355558999997543221 23356888775
No 16
>PLN02442 S-formylglutathione hydrolase
Probab=99.80 E-value=4.5e-18 Score=176.33 Aligned_cols=247 Identities=14% Similarity=0.076 Sum_probs=152.7
Q ss_pred ceEEEEEEEC-CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHH-HHHHHHHCCeEEEEEcCCCCC-----
Q 004839 465 YSCEQYDVPS-HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS-ELKSLLDRGWVVAFADVRGGG----- 537 (728)
Q Consensus 465 ~~~~~~~~~s-~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~-~~~~l~~~Gy~v~~~d~RG~g----- 537 (728)
...+.+++.| .-|..+++.+++|+. ..++++|+|+++||..+......... ..+.+...|++|++||..++|
T Consensus 16 ~~~~~~~~~s~~l~~~~~~~vy~P~~-~~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~ 94 (283)
T PLN02442 16 GFNRRYKHFSSTLGCSMTFSVYFPPA-SDSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEG 94 (283)
T ss_pred CEEEEEEEeccccCCceEEEEEcCCc-ccCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCC
Confidence 4556666666 357789999999984 34567999999999766442221212 235556689999999986554
Q ss_pred -------CCCCcccccc-ccCCCCCcHHH-HHHHHHHHHHc--CCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEe
Q 004839 538 -------GGGKKWHHDG-RRTKKLNSIKD-FISCARFLIEK--EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLE 606 (728)
Q Consensus 538 -------~~G~~~~~~~-~~~~~~~~~~D-~~~~~~~l~~~--~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~ 606 (728)
++|..|+... ...++...+.+ +.+.+..+++. ..+|+++++|+|+||||++++.++.++|++|+++++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~ 174 (283)
T PLN02442 95 EADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAF 174 (283)
T ss_pred CccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEE
Confidence 1222222111 11111111122 22222222222 2368999999999999999999999999999999999
Q ss_pred CCcccchhhccCCCCCCCcccccccCCCCCHHHHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHH-HHHHHHHHHHh
Q 004839 607 VPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVW-EAAKWVARVRE 685 (728)
Q Consensus 607 ~p~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~-~~~~~~~~L~~ 685 (728)
+|+.|+.... .+. ...-..+|.+. +..+.+...+|+.++.. .+.|+++++|+.|+.|+.. ++..++++|++
T Consensus 175 ~~~~~~~~~~----~~~-~~~~~~~g~~~--~~~~~~d~~~~~~~~~~-~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~ 246 (283)
T PLN02442 175 APIANPINCP----WGQ-KAFTNYLGSDK--ADWEEYDATELVSKFND-VSATILIDQGEADKFLKEQLLPENFEEACKE 246 (283)
T ss_pred CCccCcccCc----hhh-HHHHHHcCCCh--hhHHHcChhhhhhhccc-cCCCEEEEECCCCccccccccHHHHHHHHHH
Confidence 9998754210 000 00111234432 23333445555666654 7889999999999999974 68999999999
Q ss_pred CCCCCCCccEEEEcCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 004839 686 STIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMM 726 (728)
Q Consensus 686 ~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~afl~~~l 726 (728)
++.+ ....++++++|.+..-... +...+.|..+++
T Consensus 247 ~g~~---~~~~~~pg~~H~~~~~~~~---i~~~~~~~~~~~ 281 (283)
T PLN02442 247 AGAP---VTLRLQPGYDHSYFFIATF---IDDHINHHAQAL 281 (283)
T ss_pred cCCC---eEEEEeCCCCccHHHHHHH---HHHHHHHHHHHh
Confidence 8853 1222278999975421122 223345665554
No 17
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.78 E-value=2.3e-17 Score=170.67 Aligned_cols=242 Identities=14% Similarity=0.089 Sum_probs=154.5
Q ss_pred ceEEEEEEECC-CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHH-HCCeEEEEEcC--CCCCCCC
Q 004839 465 YSCEQYDVPSH-DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLL-DRGWVVAFADV--RGGGGGG 540 (728)
Q Consensus 465 ~~~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~-~~Gy~v~~~d~--RG~g~~G 540 (728)
.+.+.+.+.+. -|.++++.++.|++.. .++.|+|+++||..+......+....+.|+ +.|++|++||. ||++..|
T Consensus 11 ~~~~~~~~~s~~~~~~~~~~v~~P~~~~-~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~ 89 (275)
T TIGR02821 11 GTQGFYRHKSETCGVPMTFGVFLPPQAA-AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAG 89 (275)
T ss_pred CEEEEEEEeccccCCceEEEEEcCCCcc-CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCC
Confidence 45566666665 4677889999998643 346899999999865443222233344555 47999999997 6665333
Q ss_pred ----------Cccccccc-cCC--CCCcHHHHHHHHHHHHHc-CCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEe
Q 004839 541 ----------KKWHHDGR-RTK--KLNSIKDFISCARFLIEK-EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLE 606 (728)
Q Consensus 541 ----------~~~~~~~~-~~~--~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~ 606 (728)
..|+-... ..+ .......+...+..++++ ..+|++|++++|+||||++++.++.++|++|+++++.
T Consensus 90 ~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~ 169 (275)
T TIGR02821 90 EDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAF 169 (275)
T ss_pred CcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEE
Confidence 12221110 001 112233444555565654 3478899999999999999999999999999999999
Q ss_pred CCcccchhhccCCCCCCCcccc-cccCCCCCHHHHHHHHccCccccccc-CCCCCeEEEEcCCCCCCCH-HHHHHHHHHH
Q 004839 607 VPFLDATNTLLYPILPLIAADY-EEFGYPGDIDDFHAIRNYSPYDNIQK-DVLYPAVLVTSSFNTRFGV-WEAAKWVARV 683 (728)
Q Consensus 607 ~p~~d~~~~~~~~~~~~~~~~~-~~~g~p~~~~~~~~~~~~sP~~~i~~-~~~~P~lli~g~~D~~Vp~-~~~~~~~~~L 683 (728)
+|+.+.... +...... ..++.+.. .+..++|...+.. ....|+++++|+.|+.||. .++.++.++|
T Consensus 170 ~~~~~~~~~------~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~~~~l 238 (275)
T TIGR02821 170 APIVAPSRC------PWGQKAFSAYLGADEA-----AWRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAFEQAC 238 (275)
T ss_pred CCccCcccC------cchHHHHHHHhccccc-----chhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHHHHHH
Confidence 999875321 1110001 11233211 1234566554432 1345667778999999999 6899999999
Q ss_pred HhCCCCCCCccEEE--EcCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 004839 684 RESTIYDPKRPILL--NLTTDIVEENRYLQCKESALETAFLIKMM 726 (728)
Q Consensus 684 ~~~~~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~~~~afl~~~l 726 (728)
++++++ +.+ +++++|++......+ ...+.|+.+++
T Consensus 239 ~~~g~~-----v~~~~~~g~~H~f~~~~~~~---~~~~~~~~~~~ 275 (275)
T TIGR02821 239 RAAGQA-----LTLRRQAGYDHSYYFIASFI---ADHLRHHAERL 275 (275)
T ss_pred HHcCCC-----eEEEEeCCCCccchhHHHhH---HHHHHHHHhhC
Confidence 999853 444 889999875533333 34557766653
No 18
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.77 E-value=3.6e-18 Score=159.85 Aligned_cols=207 Identities=16% Similarity=0.124 Sum_probs=153.5
Q ss_pred ccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004839 496 NPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 575 (728)
Q Consensus 496 ~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 575 (728)
.-.||++||-.|+. ........+|.++||.|.+|++||+|-....|...+..+| ++|+.++.++|.++++ +
T Consensus 15 ~~AVLllHGFTGt~--~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy---~ 85 (243)
T COG1647 15 NRAVLLLHGFTGTP--RDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY---D 85 (243)
T ss_pred CEEEEEEeccCCCc--HHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC---C
Confidence 37899999977654 4556788999999999999999999988888877777665 7889999999999988 6
Q ss_pred cEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCCC-----CcccccccCCCCCHHHHHHHHccC--c
Q 004839 576 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPL-----IAADYEEFGYPGDIDDFHAIRNYS--P 648 (728)
Q Consensus 576 ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~-----~~~~~~~~g~p~~~~~~~~~~~~s--P 648 (728)
.|+|.|.||||.+++.++.++| .+++|..++.+...+. ...+ ....+..+.....+...+.+.++. |
T Consensus 86 eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~----~~iie~~l~y~~~~kk~e~k~~e~~~~e~~~~~~~~ 159 (243)
T COG1647 86 EIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSW----RIIIEGLLEYFRNAKKYEGKDQEQIDKEMKSYKDTP 159 (243)
T ss_pred eEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccc----hhhhHHHHHHHHHhhhccCCCHHHHHHHHHHhhcch
Confidence 8999999999999999999988 6777777765553221 0100 001122222332222233444554 2
Q ss_pred c--------------cccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCchhhhHHH
Q 004839 649 Y--------------DNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKE 714 (728)
Q Consensus 649 ~--------------~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~ 714 (728)
. .++.. |..|+++++|++|+.||.+.+..++..+..-. +.+.++.+.||......++-..
T Consensus 160 ~~~~~~~~~~i~~~~~~~~~-I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~~-----KeL~~~e~SgHVIt~D~Erd~v 233 (243)
T COG1647 160 MTTTAQLKKLIKDARRSLDK-IYSPTLVVQGRQDEMVPAESANFIYDHVESDD-----KELKWLEGSGHVITLDKERDQV 233 (243)
T ss_pred HHHHHHHHHHHHHHHhhhhh-cccchhheecccCCCCCHHHHHHHHHhccCCc-----ceeEEEccCCceeecchhHHHH
Confidence 2 34555 89999999999999999999999999998755 4554589999998775555555
Q ss_pred HHHHHHHHH
Q 004839 715 SALETAFLI 723 (728)
Q Consensus 715 ~~~~~afl~ 723 (728)
.+..+.||.
T Consensus 234 ~e~V~~FL~ 242 (243)
T COG1647 234 EEDVITFLE 242 (243)
T ss_pred HHHHHHHhh
Confidence 677889985
No 19
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.76 E-value=6.1e-17 Score=187.35 Aligned_cols=254 Identities=15% Similarity=0.057 Sum_probs=176.1
Q ss_pred CCCceEEEEEEECC-----CCc--EEEEEEEEcCCCCCCCCccEEE----EEcCCCCC-------Cc-------Cc----
Q 004839 462 SEFYSCEQYDVPSH-----DGI--SVPLTIIYSPKYKKENQNPGLL----HGHGAYGE-------LL-------DK---- 512 (728)
Q Consensus 462 ~~~~~~~~~~~~s~-----dG~--~i~~~l~~p~~~~~~~~~P~vv----~~hGg~~~-------~~-------~~---- 512 (728)
......|.|++.+. ||. .|.+.|++|+....+-+.|+|+ |..|.... .. .+
T Consensus 165 ~~~~ire~v~Vet~~Dtd~dg~~D~v~~~i~rP~~~~~g~k~p~i~~aspY~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 244 (767)
T PRK05371 165 TSQLIREVVYVETPVDTDQDGKLDLVKVTIVRPKETASGLKVPVIMTASPYYQGTNDVANDKKLHNVDVELYAKPPRAQF 244 (767)
T ss_pred cccceEEEEEEeCCCCCCCCCCcceEEEEEECCCccCCCCccceEEecCccccCCCCcccccccccCCccccccCCcccc
Confidence 56677888988764 664 5889999998765555889988 33443100 00 00
Q ss_pred -----------------c-----cHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHH--
Q 004839 513 -----------------R-----WRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIE-- 568 (728)
Q Consensus 513 -----------------~-----~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~-- 568 (728)
. -....++|+.|||+|++.|.||.++++..|.. .+....+|..++|+||..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rGYaVV~~D~RGtg~SeG~~~~-----~~~~E~~D~~~vIeWl~~~~ 319 (767)
T PRK05371 245 TPLKTQPRKLPVGPAEESFTHINSYSLNDYFLPRGFAVVYVSGIGTRGSDGCPTT-----GDYQEIESMKAVIDWLNGRA 319 (767)
T ss_pred ccccccccccCCCccchhhccCcchhHHHHHHhCCeEEEEEcCCCCCCCCCcCcc-----CCHHHHHHHHHHHHHHhhCC
Confidence 0 11345889999999999999999988665432 235678999999999984
Q ss_pred -------------cCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCC---CC-----ccc
Q 004839 569 -------------KEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILP---LI-----AAD 627 (728)
Q Consensus 569 -------------~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~---~~-----~~~ 627 (728)
+.|. .+|||++|.||||++++++|+..|+.++|+|+.+++.++...+...... .. ...
T Consensus 320 ~~~~d~~~~~~~kq~Ws-nGkVGm~G~SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~ 398 (767)
T PRK05371 320 TAYTDRTRGKEVKADWS-NGKVAMTGKSYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDV 398 (767)
T ss_pred ccccccccccccccCCC-CCeeEEEEEcHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhh
Confidence 3333 4899999999999999999998899999999999999876543221110 00 000
Q ss_pred ccc--------cCCC-CC-------------------HHHHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHH
Q 004839 628 YEE--------FGYP-GD-------------------IDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKW 679 (728)
Q Consensus 628 ~~~--------~g~p-~~-------------------~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~ 679 (728)
..+ .+.. .. ...-+.+.+.+++.++.+ ++.|+|+|||-.|..|++.++.++
T Consensus 399 l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~fW~~rn~~~~~~k-IkvPvLlIhGw~D~~V~~~~s~~l 477 (767)
T PRK05371 399 LAELTYSRNLLAGDYLRHNEACEKLLAELTAAQDRKTGDYNDFWDDRNYLKDADK-IKASVLVVHGLNDWNVKPKQVYQW 477 (767)
T ss_pred HHHHhhhcccCcchhhcchHHHHHHHhhhhhhhhhcCCCccHHHHhCCHhhHhhC-CCCCEEEEeeCCCCCCChHHHHHH
Confidence 000 0000 00 001123455677777776 999999999999999999999999
Q ss_pred HHHHHhCCCCCCCccEEEEcCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 004839 680 VARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMM 726 (728)
Q Consensus 680 ~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~afl~~~l 726 (728)
+++|++++++ +.++ ....+|.........+.....++||.++|
T Consensus 478 y~aL~~~g~p---kkL~-l~~g~H~~~~~~~~~d~~e~~~~Wfd~~L 520 (767)
T PRK05371 478 WDALPENGVP---KKLF-LHQGGHVYPNNWQSIDFRDTMNAWFTHKL 520 (767)
T ss_pred HHHHHhcCCC---eEEE-EeCCCccCCCchhHHHHHHHHHHHHHhcc
Confidence 9999998754 3333 35678975544344455666789999987
No 20
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.76 E-value=7.2e-17 Score=173.37 Aligned_cols=250 Identities=12% Similarity=0.048 Sum_probs=154.9
Q ss_pred CceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCcc
Q 004839 464 FYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKW 543 (728)
Q Consensus 464 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~ 543 (728)
.+..+...+...||.++.+....|.+. .+.|+||++||..+.. ...|......|+++||.|+.+|+||+|.+...
T Consensus 58 ~~~~~~~~~~~~~g~~l~~~~~~p~~~---~~~~~iv~lHG~~~~~-~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~- 132 (349)
T PLN02385 58 GIKTEESYEVNSRGVEIFSKSWLPENS---RPKAAVCFCHGYGDTC-TFFFEGIARKIASSGYGVFAMDYPGFGLSEGL- 132 (349)
T ss_pred CcceeeeeEEcCCCCEEEEEEEecCCC---CCCeEEEEECCCCCcc-chHHHHHHHHHHhCCCEEEEecCCCCCCCCCC-
Confidence 344555667778999999888777542 3458999999964432 22345667889899999999999999975321
Q ss_pred ccccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhcc------
Q 004839 544 HHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLL------ 617 (728)
Q Consensus 544 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~------ 617 (728)
.+....-....+|+.+.++++..+...+..++.++||||||.+++.++.++|++++++|+.+|+........
T Consensus 133 --~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~~ 210 (349)
T PLN02385 133 --HGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLVL 210 (349)
T ss_pred --CCCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHHH
Confidence 000000011244555555555443334456899999999999999999999999999999998754311000
Q ss_pred ---------CCCCCC-Ccccccc--cCCC----------------CC-HHHHHHHHccCc-ccccccCCCCCeEEEEcCC
Q 004839 618 ---------YPILPL-IAADYEE--FGYP----------------GD-IDDFHAIRNYSP-YDNIQKDVLYPAVLVTSSF 667 (728)
Q Consensus 618 ---------~~~~~~-~~~~~~~--~g~p----------------~~-~~~~~~~~~~sP-~~~i~~~~~~P~lli~g~~ 667 (728)
.+...+ ....... +..+ .. ....+.+..... ...+.+ ++.|+|+|||+.
T Consensus 211 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~-i~~P~Lii~G~~ 289 (349)
T PLN02385 211 QILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEE-VSLPLLILHGEA 289 (349)
T ss_pred HHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhccc-CCCCEEEEEeCC
Confidence 000000 0000000 0000 00 000111111111 123344 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCc-h-hh-hHHHHHHHHHHHHHhh
Q 004839 668 NTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN-R-YL-QCKESALETAFLIKMM 726 (728)
Q Consensus 668 D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~-~-~~-~~~~~~~~~afl~~~l 726 (728)
|..||+..+.++++++...+ ..+.+++++||.... . .. .........+||.+++
T Consensus 290 D~vv~~~~~~~l~~~~~~~~-----~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~ 346 (349)
T PLN02385 290 DKVTDPSVSKFLYEKASSSD-----KKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHS 346 (349)
T ss_pred CCccChHHHHHHHHHcCCCC-----ceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhc
Confidence 99999999999998886533 233447999998653 2 22 2334566789999875
No 21
>PHA02857 monoglyceride lipase; Provisional
Probab=99.74 E-value=1.9e-16 Score=164.42 Aligned_cols=237 Identities=14% Similarity=0.085 Sum_probs=151.1
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCC
Q 004839 472 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTK 551 (728)
Q Consensus 472 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~ 551 (728)
+.+.||..+++.++.|.+ .+.|+|+++||..... ..|...+..|+++||.|+.+|+||+|.+.... .....
T Consensus 5 ~~~~~g~~l~~~~~~~~~----~~~~~v~llHG~~~~~--~~~~~~~~~l~~~g~~via~D~~G~G~S~~~~---~~~~~ 75 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPIT----YPKALVFISHGAGEHS--GRYEELAENISSLGILVFSHDHIGHGRSNGEK---MMIDD 75 (276)
T ss_pred eecCCCCEEEEEeccCCC----CCCEEEEEeCCCcccc--chHHHHHHHHHhCCCEEEEccCCCCCCCCCcc---CCcCC
Confidence 445699999998887742 3458899999965432 46777889999999999999999999753211 00011
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhh------------ccCC
Q 004839 552 KLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNT------------LLYP 619 (728)
Q Consensus 552 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~------------~~~~ 619 (728)
-...++|+...++++.+. ....+++++|+|+||.+++.++.++|++++++|+.+|+.+.... ...+
T Consensus 76 ~~~~~~d~~~~l~~~~~~--~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (276)
T PHA02857 76 FGVYVRDVVQHVVTIKST--YPGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFYP 153 (276)
T ss_pred HHHHHHHHHHHHHHHHhh--CCCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHhCC
Confidence 112356666666665543 22367999999999999999999999999999999997653210 0000
Q ss_pred CCCC---Ccccc-------ccc-CCCC------CHHHHHHHHccC-c-ccccccCCCCCeEEEEcCCCCCCCHHHHHHHH
Q 004839 620 ILPL---IAADY-------EEF-GYPG------DIDDFHAIRNYS-P-YDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWV 680 (728)
Q Consensus 620 ~~~~---~~~~~-------~~~-g~p~------~~~~~~~~~~~s-P-~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~ 680 (728)
.... ..... ..+ .+|. .......+.... . ...+.+ ++.|+|+|+|+.|..||+..+.++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~Pvliv~G~~D~i~~~~~~~~l~ 232 (276)
T PHA02857 154 NKIVGKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPK-IKTPILILQGTNNEISDVSGAYYFM 232 (276)
T ss_pred CCccCCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhccc-CCCCEEEEecCCCCcCChHHHHHHH
Confidence 0000 00000 000 1110 000000011100 1 123444 8899999999999999999999998
Q ss_pred HHHHhCCCCCCCccEEEEcCCCCCCCc-h-hhhHHHHHHHHHHHHHhh
Q 004839 681 ARVRESTIYDPKRPILLNLTTDIVEEN-R-YLQCKESALETAFLIKMM 726 (728)
Q Consensus 681 ~~L~~~~~~~~~~~~~~~~~~gH~~~~-~-~~~~~~~~~~~afl~~~l 726 (728)
+.+.. + ..+.+++++||.... . ..+-+..+..++||.++.
T Consensus 233 ~~~~~-~-----~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~~ 274 (276)
T PHA02857 233 QHANC-N-----REIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNRV 274 (276)
T ss_pred HHccC-C-----ceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHhc
Confidence 88754 2 223337999998654 2 335556777899998763
No 22
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.74 E-value=2.9e-16 Score=157.16 Aligned_cols=215 Identities=16% Similarity=0.177 Sum_probs=159.9
Q ss_pred EEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccc-cc
Q 004839 468 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWH-HD 546 (728)
Q Consensus 468 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~-~~ 546 (728)
+.+.+++.| .++++++.+|++. ++.|+||.+|+-+|-. +......+.||.+||+|++||.=+..+-..... ..
T Consensus 3 ~~v~~~~~~-~~~~~~~a~P~~~---~~~P~VIv~hei~Gl~--~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~ 76 (236)
T COG0412 3 TDVTIPAPD-GELPAYLARPAGA---GGFPGVIVLHEIFGLN--PHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEP 76 (236)
T ss_pred cceEeeCCC-ceEeEEEecCCcC---CCCCEEEEEecccCCc--hHHHHHHHHHHhCCcEEEechhhccCCCCCcccccH
Confidence 346677777 7899999999864 3349999999988844 566777899999999999999765332222221 11
Q ss_pred ccc-------CCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCC
Q 004839 547 GRR-------TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYP 619 (728)
Q Consensus 547 ~~~-------~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~ 619 (728)
... ........|+.++++||..++.++++||+++|+|+||.+++.++.+.| .++|+|+.+|..-..
T Consensus 77 ~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~~~------ 149 (236)
T COG0412 77 AELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLIAD------ 149 (236)
T ss_pred HHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCCCC------
Confidence 001 111456899999999999999899999999999999999999999766 889999887722100
Q ss_pred CCCCCcccccccCCCCCHHHHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEc
Q 004839 620 ILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNL 699 (728)
Q Consensus 620 ~~~~~~~~~~~~g~p~~~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~ 699 (728)
.+. ...+ ++.|+|++.++.|..+|.....++.+++..+++. ..+.+|+
T Consensus 150 -------------~~~---------------~~~~-~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~---~~~~~y~ 197 (236)
T COG0412 150 -------------DTA---------------DAPK-IKVPVLLHLAGEDPYIPAADVDALAAALEDAGVK---VDLEIYP 197 (236)
T ss_pred -------------ccc---------------cccc-ccCcEEEEecccCCCCChhHHHHHHHHHHhcCCC---eeEEEeC
Confidence 000 0233 8899999999999999999999999999998643 2344488
Q ss_pred CCCCCCCc----------hhhhHHHHHHHHHHHHHhhc
Q 004839 700 TTDIVEEN----------RYLQCKESALETAFLIKMME 727 (728)
Q Consensus 700 ~~gH~~~~----------~~~~~~~~~~~~afl~~~l~ 727 (728)
++.|++.. .......+.+.++||.++|+
T Consensus 198 ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 198 GAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred CCccccccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 89899763 12334455667899999876
No 23
>PRK10162 acetyl esterase; Provisional
Probab=99.74 E-value=6.7e-16 Score=162.94 Aligned_cols=231 Identities=14% Similarity=0.086 Sum_probs=155.4
Q ss_pred ceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCC-CcCcccHHHHHHHHH-CCeEEEEEcCCCCCCCCCc
Q 004839 465 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGE-LLDKRWRSELKSLLD-RGWVVAFADVRGGGGGGKK 542 (728)
Q Consensus 465 ~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~-~~~~~~~~~~~~l~~-~Gy~v~~~d~RG~g~~G~~ 542 (728)
...+.+.+++.+| .|++.+++|.. ...|+||++|||... .....+......|+. .|+.|+.+|||.+.+.
T Consensus 55 ~~~~~~~i~~~~g-~i~~~~y~P~~----~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~--- 126 (318)
T PRK10162 55 MATRAYMVPTPYG-QVETRLYYPQP----DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA--- 126 (318)
T ss_pred ceEEEEEEecCCC-ceEEEEECCCC----CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC---
Confidence 4578888998888 59999998853 235999999997532 222345556777887 5999999999987753
Q ss_pred cccccccCCCCCcHHHHHHHHHHHHHc---CCCCCCcEEEEEeCccHHHHHHHHHhC------CCceeEEEEeCCcccch
Q 004839 543 WHHDGRRTKKLNSIKDFISCARFLIEK---EIVKEHKLAGWGYSAGGLLVAAAINCC------PDLFRAVVLEVPFLDAT 613 (728)
Q Consensus 543 ~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~~------p~~f~a~v~~~p~~d~~ 613 (728)
.....++|+.++++|+.++ -.+|++||+|+|+|+||.+++.++.+. +.+++++|+.+|++|+.
T Consensus 127 --------~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~~ 198 (318)
T PRK10162 127 --------RFPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLR 198 (318)
T ss_pred --------CCCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCCC
Confidence 1234789999999999764 246899999999999999999987642 35789999999998863
Q ss_pred hhccCCCCCCCcccccccCCC---CCHHHHHHHH---------ccCcccc-----cccCCCCCeEEEEcCCCCCCCHHHH
Q 004839 614 NTLLYPILPLIAADYEEFGYP---GDIDDFHAIR---------NYSPYDN-----IQKDVLYPAVLVTSSFNTRFGVWEA 676 (728)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~g~p---~~~~~~~~~~---------~~sP~~~-----i~~~~~~P~lli~g~~D~~Vp~~~~ 676 (728)
... . +..++.. ...+..+.+. ..+|+.. +.. .--|+++++|+.|+.+ .++
T Consensus 199 ~~~---s-------~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~-~lPp~~i~~g~~D~L~--de~ 265 (318)
T PRK10162 199 DSV---S-------RRLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTR-DVPPCFIAGAEFDPLL--DDS 265 (318)
T ss_pred CCh---h-------HHHhCCCccccCHHHHHHHHHHhCCCccccCCcccCcchhhhhc-CCCCeEEEecCCCcCc--ChH
Confidence 210 0 0000000 0011111110 1233321 111 2347888999999765 489
Q ss_pred HHHHHHHHhCCCCCCCccEEEEcCCCCCCCc----hhhhHHHHHHHHHHHHHhhc
Q 004839 677 AKWVARVRESTIYDPKRPILLNLTTDIVEEN----RYLQCKESALETAFLIKMME 727 (728)
Q Consensus 677 ~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~afl~~~l~ 727 (728)
++|+++|+++|++ ..+..+++..|++.. .....+....+.+||.++|.
T Consensus 266 ~~~~~~L~~aGv~---v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 266 RLLYQTLAAHQQP---CEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred HHHHHHHHHcCCC---EEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 9999999999964 222238999999753 12333445556789988874
No 24
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.73 E-value=2.6e-17 Score=164.48 Aligned_cols=204 Identities=15% Similarity=0.121 Sum_probs=135.6
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCC-CCCccccccccC------CC
Q 004839 480 VPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGG-GGKKWHHDGRRT------KK 552 (728)
Q Consensus 480 i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~-~G~~~~~~~~~~------~~ 552 (728)
+.+++..|++. ++.|.||++|+.+|-. +........|+++||.|++||+-+... .-....+..... ..
T Consensus 1 ~~ay~~~P~~~---~~~~~Vvv~~d~~G~~--~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (218)
T PF01738_consen 1 IDAYVARPEGG---GPRPAVVVIHDIFGLN--PNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRP 75 (218)
T ss_dssp EEEEEEEETTS---SSEEEEEEE-BTTBS---HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSH
T ss_pred CeEEEEeCCCC---CCCCEEEEEcCCCCCc--hHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhH
Confidence 56788899863 6789999999988744 444567789999999999999765544 111111110000 01
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCCCCcccccccC
Q 004839 553 LNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFG 632 (728)
Q Consensus 553 ~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g 632 (728)
.....|+.+++++|.+++.++.+||+++|+|+||.+++.++.+. +.++|+|+.+|...
T Consensus 76 ~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~--------------------- 133 (218)
T PF01738_consen 76 EQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP--------------------- 133 (218)
T ss_dssp HHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS---------------------
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC---------------------
Confidence 13457888999999999888999999999999999999998865 68999999888000
Q ss_pred CCCCHHHHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCc-h-h-
Q 004839 633 YPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN-R-Y- 709 (728)
Q Consensus 633 ~p~~~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~-~-~- 709 (728)
+. .+.....+ ++.|+++++|+.|+.+|.++..++.++|++++++ ..+.+|++++|++.. . .
T Consensus 134 -~~-----------~~~~~~~~-~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~---~~~~~y~ga~HgF~~~~~~~ 197 (218)
T PF01738_consen 134 -PP-----------PPLEDAPK-IKAPVLILFGENDPFFPPEEVEALEEALKAAGVD---VEVHVYPGAGHGFANPSRPP 197 (218)
T ss_dssp -GG-----------GHHHHGGG---S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTT---EEEEEETT--TTTTSTTSTT
T ss_pred -CC-----------cchhhhcc-cCCCEeecCccCCCCCChHHHHHHHHHHHhcCCc---EEEEECCCCcccccCCCCcc
Confidence 00 11112333 7889999999999999999999999999988853 233339999999865 2 1
Q ss_pred ----hhHHHHHHHHHHHHHhh
Q 004839 710 ----LQCKESALETAFLIKMM 726 (728)
Q Consensus 710 ----~~~~~~~~~~afl~~~l 726 (728)
...+.+.+..+||.++|
T Consensus 198 ~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 198 YDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp --HHHHHHHHHHHHHHHCC--
T ss_pred cCHHHHHHHHHHHHHHHHhcC
Confidence 23344555688988876
No 25
>PRK10749 lysophospholipase L2; Provisional
Probab=99.73 E-value=1e-15 Score=162.95 Aligned_cols=248 Identities=13% Similarity=0.127 Sum_probs=151.9
Q ss_pred EEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccc
Q 004839 467 CEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHD 546 (728)
Q Consensus 467 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~ 546 (728)
.+...+...||.++.+....|. .+.|+||++||..+.. ..|...+..|+++||.|+.+|+||+|.++......
T Consensus 30 ~~~~~~~~~~g~~l~~~~~~~~-----~~~~~vll~HG~~~~~--~~y~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~ 102 (330)
T PRK10749 30 REEAEFTGVDDIPIRFVRFRAP-----HHDRVVVICPGRIESY--VKYAELAYDLFHLGYDVLIIDHRGQGRSGRLLDDP 102 (330)
T ss_pred ccceEEEcCCCCEEEEEEccCC-----CCCcEEEEECCccchH--HHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCCCC
Confidence 3456677789998887665443 2346899999964322 34556677889999999999999999875432111
Q ss_pred cccCCCCCcHHHHHHHHHHHHHc--CCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhh---------
Q 004839 547 GRRTKKLNSIKDFISCARFLIEK--EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNT--------- 615 (728)
Q Consensus 547 ~~~~~~~~~~~D~~~~~~~l~~~--~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~--------- 615 (728)
..+ ...+++++++.+..+++. ...+..++.++||||||.+++.++.++|++++++|+.+|.......
T Consensus 103 ~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~ 180 (330)
T PRK10749 103 HRG--HVERFNDYVDDLAAFWQQEIQPGPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPLPSWMARRI 180 (330)
T ss_pred CcC--ccccHHHHHHHHHHHHHHHHhcCCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCCCcHHHHHH
Confidence 111 112455555544444432 1124578999999999999999999999999999999987542100
Q ss_pred --cc--CCCCC----C-Ccccccc-c-CC--CCCHHH----HHHHHccCc----------------------ccccccCC
Q 004839 616 --LL--YPILP----L-IAADYEE-F-GY--PGDIDD----FHAIRNYSP----------------------YDNIQKDV 656 (728)
Q Consensus 616 --~~--~~~~~----~-~~~~~~~-~-g~--p~~~~~----~~~~~~~sP----------------------~~~i~~~~ 656 (728)
.. ..... . ...+... + .+ ....+. .+.+. .+| ...+.+ +
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i 258 (330)
T PRK10749 181 LNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYA-DDPELRVGGPTYHWVRESILAGEQVLAGAGD-I 258 (330)
T ss_pred HHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHH-hCCCcccCCCcHHHHHHHHHHHHHHHhhccC-C
Confidence 00 00000 0 0000000 0 00 000111 01111 111 123444 8
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCc--hhhhHHHHHHHHHHHHHh
Q 004839 657 LYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN--RYLQCKESALETAFLIKM 725 (728)
Q Consensus 657 ~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~afl~~~ 725 (728)
+.|+|+|+|+.|..|++..+.+++++++.++.+.....+.+++++||.... ...+......+.+||.++
T Consensus 259 ~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 259 TTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred CCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 899999999999999999999999999876532212234448999998543 223444556678998764
No 26
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.72 E-value=1.6e-16 Score=157.84 Aligned_cols=191 Identities=10% Similarity=0.046 Sum_probs=125.9
Q ss_pred EEEEcCCCCCCCCccEEEEEcCCCCCCcCcccH-HHHHHHHHCCeEEEEEcCCCCCCCCCc--cccccccCCCCCcHHHH
Q 004839 483 TIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR-SELKSLLDRGWVVAFADVRGGGGGGKK--WHHDGRRTKKLNSIKDF 559 (728)
Q Consensus 483 ~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~-~~~~~l~~~Gy~v~~~d~RG~g~~G~~--~~~~~~~~~~~~~~~D~ 559 (728)
+++.|++. +++.|+||++||+.+........ ...+.+.+.||+|+.||+||++..+.. |........+.....|+
T Consensus 2 ~ly~P~~~--~~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (212)
T TIGR01840 2 YVYVPAGL--TGPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVESL 79 (212)
T ss_pred EEEcCCCC--CCCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHHH
Confidence 57778764 36789999999986543211111 122334457999999999998755443 33332222334567888
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCCCCcccccccCCCCCHHH
Q 004839 560 ISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDD 639 (728)
Q Consensus 560 ~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~~ 639 (728)
...++++.++..+|++||+|+|+|+||++++.++.++|++|+++++.++..-.... .... .......+.....
T Consensus 80 ~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~----~~~~---~~~~~~~~~~~~~ 152 (212)
T TIGR01840 80 HQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEAS----SSIS---ATPQMCTAATAAS 152 (212)
T ss_pred HHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccc----cchh---hHhhcCCCCCHHH
Confidence 99999999888899999999999999999999999999999999988875421110 0000 0011111111111
Q ss_pred -HHHHHccCcccccccCCCCCe-EEEEcCCCCCCCHHHHHHHHHHHHhC
Q 004839 640 -FHAIRNYSPYDNIQKDVLYPA-VLVTSSFNTRFGVWEAAKWVARVRES 686 (728)
Q Consensus 640 -~~~~~~~sP~~~i~~~~~~P~-lli~g~~D~~Vp~~~~~~~~~~L~~~ 686 (728)
.+.+.... .... ...|+ +++||..|..||+..+.+++++|++.
T Consensus 153 ~~~~~~~~~--~~~~--~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 153 VCRLVRGMQ--SEYN--GPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred HHHHHhccC--Cccc--CCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 12222211 1111 24554 68899999999999999999999986
No 27
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=5.4e-15 Score=163.31 Aligned_cols=262 Identities=13% Similarity=0.047 Sum_probs=169.6
Q ss_pred hhHHHHhCCCCCCCCCCCeEeCCeEEEEEccCCCe-eEEEEEEecCCCcccccCCCCCCCccCCCCCCCcEEEeeccccc
Q 004839 39 PLAWLLSFPLLPSAGAPGDLHHRRLYYRRVEEGKQ-YLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEA 117 (728)
Q Consensus 39 ~~~~~~~~r~~~~~~~~p~~~g~~~yy~~~~~g~e-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~ 117 (728)
-++|.+...|-+.....+-.-.....|.....++. ...++....++ ...+.++..+
T Consensus 161 ~~~h~~~d~i~~~ltG~~g~f~~riayv~~~~~~~~~~~l~i~d~dG--------------------~~~~~l~~~~--- 217 (448)
T PRK04792 161 QYAHRISDIVYEKLTGERGAFLTRIAYVVVNDKDKYPYQLMIADYDG--------------------YNEQMLLRSP--- 217 (448)
T ss_pred HHHHHHHHHHHHHhcCCCccccCEEEEEEeeCCCCCceEEEEEeCCC--------------------CCceEeecCC---
Confidence 36777777777766655544444433433333322 22333322221 1234555432
Q ss_pred ccCCceEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcce
Q 004839 118 ERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQ 196 (728)
Q Consensus 118 ~~~~~~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~ 196 (728)
+ .+..++|||||++|||+...++ ..+||++|+++|+...++. ......+.|||||+.|+|+.... ...+
T Consensus 218 ---~---~~~~p~wSPDG~~La~~s~~~g--~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~--g~~~ 287 (448)
T PRK04792 218 ---E---PLMSPAWSPDGRKLAYVSFENR--KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKD--GQPE 287 (448)
T ss_pred ---C---cccCceECCCCCEEEEEEecCC--CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCC--CCeE
Confidence 2 3557889999999999976544 4789999999998766654 33456789999999999986543 2458
Q ss_pred eEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeec-CCceEEEEeecCC
Q 004839 197 IYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC-EGLAHCIVEHHEG 275 (728)
Q Consensus 197 v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~-~~~~~~~~~~dg~ 275 (728)
||++++.+++...+.. .. .....+.|||||++|++.+...+..+||++|+++ ++.+.++.. .......+++||+
T Consensus 288 Iy~~dl~tg~~~~lt~-~~--~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~--g~~~~Lt~~g~~~~~~~~SpDG~ 362 (448)
T PRK04792 288 IYVVDIATKALTRITR-HR--AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS--GKVSRLTFEGEQNLGGSITPDGR 362 (448)
T ss_pred EEEEECCCCCeEECcc-CC--CCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCEEEEecCCCCCcCeeECCCCC
Confidence 9999998875333322 11 1224578999999999998877778999999987 456666532 2222346789999
Q ss_pred EEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecC
Q 004839 276 FLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLP 349 (728)
Q Consensus 276 ~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~ 349 (728)
.+++.+...+ .++|+.++++ . +..+.+.....+... .+...++.|++....+|...|++++.+
T Consensus 363 ~l~~~~~~~g------~~~I~~~dl~-~---g~~~~lt~~~~d~~p-s~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 363 SMIMVNRTNG------KFNIARQDLE-T---GAMQVLTSTRLDESP-SVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred EEEEEEecCC------ceEEEEEECC-C---CCeEEccCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEECC
Confidence 9998776542 3678888876 2 333333222111111 455566788888888888889999875
No 28
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=5.5e-15 Score=163.45 Aligned_cols=262 Identities=13% Similarity=0.094 Sum_probs=170.9
Q ss_pred hhHHHHhCCCCCCCCCCCeEeCCeEEEEEccCCCe--eEEEEEEecCCCcccccCCCCCCCccCCCCCCCcEEEeecccc
Q 004839 39 PLAWLLSFPLLPSAGAPGDLHHRRLYYRRVEEGKQ--YLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQE 116 (728)
Q Consensus 39 ~~~~~~~~r~~~~~~~~p~~~g~~~yy~~~~~g~e--~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~ 116 (728)
.++|.|...|-+.-...+..-...++|.....|+. ...++....++ ...+.|...+
T Consensus 144 ~~ah~~~d~i~~~ltg~~g~f~~~iafv~~~~~~~~~~~~l~~~d~dg--------------------~~~~~lt~~~-- 201 (435)
T PRK05137 144 RAAHKIADAIYERLTGEKGYFDTRIVYVAESGPKNKRIKRLAIMDQDG--------------------ANVRYLTDGS-- 201 (435)
T ss_pred HHHHHHHHHHHHHHhCCCCcCCCeEEEEEeeCCCCCcceEEEEECCCC--------------------CCcEEEecCC--
Confidence 37788777777765554444455667766555532 33444432221 1223344321
Q ss_pred cccCCceEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcc
Q 004839 117 AERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPY 195 (728)
Q Consensus 117 ~~~~~~~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~ 195 (728)
+ .+..++|||||++|||....+|. .+||++|+++|+...++. .+....+.|||||+.|+|+.... ...
T Consensus 202 ----~---~v~~p~wSpDG~~lay~s~~~g~--~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~--g~~ 270 (435)
T PRK05137 202 ----S---LVLTPRFSPNRQEITYMSYANGR--PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQG--GNT 270 (435)
T ss_pred ----C---CeEeeEECCCCCEEEEEEecCCC--CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecC--CCc
Confidence 2 35678899999999999766553 689999999998776654 44567889999999999986543 246
Q ss_pred eeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCc-eEEEEeecC
Q 004839 196 QIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL-AHCIVEHHE 274 (728)
Q Consensus 196 ~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~-~~~~~~~dg 274 (728)
+||.+++.++....+. ... .....+.|||||++|++.++..+..+||++|+++ +..+.++..... ....+++||
T Consensus 271 ~Iy~~d~~~~~~~~Lt-~~~--~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g--~~~~~lt~~~~~~~~~~~SpdG 345 (435)
T PRK05137 271 DIYTMDLRSGTTTRLT-DSP--AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG--SNPRRISFGGGRYSTPVWSPRG 345 (435)
T ss_pred eEEEEECCCCceEEcc-CCC--CccCceeEcCCCCEEEEEECCCCCCeEEEEECCC--CCeEEeecCCCcccCeEECCCC
Confidence 8999999877543332 211 1223578999999999998877778999999987 456677654322 235678999
Q ss_pred CEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEee--CCEEEEEEecCCe---eEEEEEecC
Q 004839 275 GFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC--KTHMALILREGRT---YRLCSVSLP 349 (728)
Q Consensus 275 ~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~--~~~lv~~~~~~g~---~~l~~~~l~ 349 (728)
+.+++.....+ .++|+.++++ . +. ..++.... ..+.+.+. ++.|++.....+. .+|++++++
T Consensus 346 ~~ia~~~~~~~------~~~i~~~d~~-~---~~-~~~lt~~~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 346 DLIAFTKQGGG------QFSIGVMKPD-G---SG-ERILTSGF--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CEEEEEEcCCC------ceEEEEEECC-C---Cc-eEeccCCC--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 99998875432 3678888765 1 22 23333322 23444444 4677776665554 689999986
Q ss_pred CC
Q 004839 350 LP 351 (728)
Q Consensus 350 ~~ 351 (728)
++
T Consensus 413 g~ 414 (435)
T PRK05137 413 GR 414 (435)
T ss_pred CC
Confidence 43
No 29
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.70 E-value=2.3e-15 Score=148.54 Aligned_cols=245 Identities=16% Similarity=0.093 Sum_probs=164.0
Q ss_pred ceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccc
Q 004839 465 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWH 544 (728)
Q Consensus 465 ~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~ 544 (728)
.....-.+...+|.++..-...|... ..+.-+|+++||. +......|...+..|+..||.|+..|++|+|.+.
T Consensus 25 ~~~~~~~~~n~rG~~lft~~W~p~~~--~~pr~lv~~~HG~-g~~~s~~~~~~a~~l~~~g~~v~a~D~~GhG~Sd---- 97 (313)
T KOG1455|consen 25 VTYSESFFTNPRGAKLFTQSWLPLSG--TEPRGLVFLCHGY-GEHSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSD---- 97 (313)
T ss_pred cceeeeeEEcCCCCEeEEEecccCCC--CCCceEEEEEcCC-cccchhhHHHHHHHHHhCCCeEEEeeccCCCcCC----
Confidence 34445567888999888777777542 1445678889974 4333456777889999999999999999999752
Q ss_pred cccccCC---CCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccC---
Q 004839 545 HDGRRTK---KLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLY--- 618 (728)
Q Consensus 545 ~~~~~~~---~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~--- 618 (728)
|.... -...++|+.+-++....+.....-..+++|+||||.+++.++.++|+.+.++|+.+|+.-+..-+..
T Consensus 98 --Gl~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~ 175 (313)
T KOG1455|consen 98 --GLHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPP 175 (313)
T ss_pred --CCcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcH
Confidence 22221 1223455555555555554444467899999999999999999999999999999998765432100
Q ss_pred ---------CCCCCCc-ccccccCCC--CCHHHHHHHHccCcc----------------------cccccCCCCCeEEEE
Q 004839 619 ---------PILPLIA-ADYEEFGYP--GDIDDFHAIRNYSPY----------------------DNIQKDVLYPAVLVT 664 (728)
Q Consensus 619 ---------~~~~~~~-~~~~~~g~p--~~~~~~~~~~~~sP~----------------------~~i~~~~~~P~lli~ 664 (728)
.-+|-.. ........+ .+++. ..+...+|+ .++.+ +..|.|++|
T Consensus 176 v~~~l~~l~~liP~wk~vp~~d~~~~~~kdp~~-r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~-vtvPflilH 253 (313)
T KOG1455|consen 176 VISILTLLSKLIPTWKIVPTKDIIDVAFKDPEK-RKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNE-VTVPFLILH 253 (313)
T ss_pred HHHHHHHHHHhCCceeecCCccccccccCCHHH-HHHhhcCCceecCCccHHHHHHHHHHHHHHHHhccc-ccccEEEEe
Confidence 0001000 000000000 11111 222223332 34555 889999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCC---chhhhHHHHHHHHHHHHHh
Q 004839 665 SSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEE---NRYLQCKESALETAFLIKM 725 (728)
Q Consensus 665 g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~---~~~~~~~~~~~~~afl~~~ 725 (728)
|+.|..+.+.-+.++++...... +.+-+||+.=|... ..++......++.+||.++
T Consensus 254 G~dD~VTDp~~Sk~Lye~A~S~D-----KTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 254 GTDDKVTDPKVSKELYEKASSSD-----KTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred cCCCcccCcHHHHHHHHhccCCC-----CceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 99999999999999999998876 44555899999844 3566666788899999875
No 30
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.69 E-value=1.3e-15 Score=147.43 Aligned_cols=211 Identities=18% Similarity=0.197 Sum_probs=153.1
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHH-CCeEEEEEcCCCCCCCCCccc
Q 004839 466 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLD-RGWVVAFADVRGGGGGGKKWH 544 (728)
Q Consensus 466 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~-~Gy~v~~~d~RG~g~~G~~~~ 544 (728)
..+.+..+.+.|..+-+..+.|+.. ..++++|.||- ....+ ........|.. -++.|+.+||+|.|.++..--
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~~----~~~~lly~hGN-a~Dlg-q~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~ps 107 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPEA----AHPTLLYSHGN-AADLG-QMVELFKELSIFLNCNVVSYDYSGYGRSSGKPS 107 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCccc----cceEEEEcCCc-ccchH-HHHHHHHHHhhcccceEEEEecccccccCCCcc
Confidence 4566777788888888777776542 46899999985 22221 11122233333 499999999999996633322
Q ss_pred cccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCCCC
Q 004839 545 HDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLI 624 (728)
Q Consensus 545 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~ 624 (728)
+ .+.++|+.++.+||.+... .+++|+++|+|+|...++.+|.+.| .+|+|+++||++....+... ...
T Consensus 108 E-------~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~~--~~~ 175 (258)
T KOG1552|consen 108 E-------RNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFPD--TKT 175 (258)
T ss_pred c-------ccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhccC--cce
Confidence 1 2789999999999998765 7899999999999999999999988 89999999999987654321 111
Q ss_pred cccccccCCCCCHHHHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCC
Q 004839 625 AADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIV 704 (728)
Q Consensus 625 ~~~~~~~g~p~~~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~ 704 (728)
..++..| +-+..|.. +++|+|++||..|++||..++.+++++++..- .+++ ..++||.
T Consensus 176 ~~~~d~f---------------~~i~kI~~-i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~~-----epl~-v~g~gH~ 233 (258)
T KOG1552|consen 176 TYCFDAF---------------PNIEKISK-ITCPVLIIHGTDDEVVDFSHGKALYERCKEKV-----EPLW-VKGAGHN 233 (258)
T ss_pred EEeeccc---------------cccCccee-ccCCEEEEecccCceecccccHHHHHhccccC-----CCcE-EecCCCc
Confidence 1122222 22556776 89999999999999999999999999998753 3555 4799998
Q ss_pred CCc-hhhhHHHHH
Q 004839 705 EEN-RYLQCKESA 716 (728)
Q Consensus 705 ~~~-~~~~~~~~~ 716 (728)
... ....++...
T Consensus 234 ~~~~~~~yi~~l~ 246 (258)
T KOG1552|consen 234 DIELYPEYIEHLR 246 (258)
T ss_pred ccccCHHHHHHHH
Confidence 655 445554443
No 31
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=7.6e-15 Score=160.85 Aligned_cols=272 Identities=7% Similarity=-0.062 Sum_probs=173.8
Q ss_pred CCCchhhHHHHhCCCCCCCCCCCeEeCCeEEEEEccCCCe----eEEEEEEecCCCcccccCCCCCCCccCCCCCCCcEE
Q 004839 34 SSPRWPLAWLLSFPLLPSAGAPGDLHHRRLYYRRVEEGKQ----YLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQK 109 (728)
Q Consensus 34 ~~~~~~~~~~~~~r~~~~~~~~p~~~g~~~yy~~~~~g~e----~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (728)
.+...-++|.+...+.+...+.|-.-+.++.|.....+.+ ...++....++ +..+.
T Consensus 120 ~~~~r~~~h~~~D~~~~~~tg~~g~~~~~iayv~~~~~~~~~~~~~~l~~~d~dG--------------------~~~~~ 179 (428)
T PRK01029 120 LSKDRQKIHEAADTIHYALTGVPGISSGKIIFSLSTTNSDTELKQGELWSVDYDG--------------------QNLRP 179 (428)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCccccCEEEEEEeeCCcccccccceEEEEcCCC--------------------CCceE
Confidence 3334457888888888877777766688877776554422 23444433322 22233
Q ss_pred EeecccccccCCceEEeeceeeCCCCCE--EEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEE
Q 004839 110 LLDYNQEAERFGGYAYEELSEVSPDHKF--LAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYV 186 (728)
Q Consensus 110 lld~n~~~~~~~~~~~~~~~~~SPDG~~--lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~ 186 (728)
|...+ + ....|+|||||+. ++|.+.++| ..+||++++++|+..+++. .+....+.|||||+.|+|+
T Consensus 180 lt~~~------~---~~~sP~wSPDG~~~~~~y~S~~~g--~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~ 248 (428)
T PRK01029 180 LTQEH------S---LSITPTWMHIGSGFPYLYVSYKLG--VPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFI 248 (428)
T ss_pred cccCC------C---CcccceEccCCCceEEEEEEccCC--CceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEE
Confidence 33321 1 2457889999998 556776665 4789999999998877765 4556679999999999998
Q ss_pred EecCCCCcceeEEE--ECCCC--CceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeec
Q 004839 187 VTDQNKRPYQIYCS--IIGST--DEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC 262 (728)
Q Consensus 187 ~~~~~~~~~~v~~~--~l~t~--~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~ 262 (728)
..... ..++|.+ ++.++ .....+..... .....+.|||||++|++.++..+..+||++++....+..+.++..
T Consensus 249 s~~~g--~~di~~~~~~~~~g~~g~~~~lt~~~~-~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~ 325 (428)
T PRK01029 249 SDRYG--NPDLFIQSFSLETGAIGKPRRLLNEAF-GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK 325 (428)
T ss_pred ECCCC--CcceeEEEeecccCCCCcceEeecCCC-CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC
Confidence 64322 2356665 44432 12222332211 112357899999999999877667789999986433445666544
Q ss_pred CC-ceEEEEeecCCEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEee--CCEEEEEEecCC
Q 004839 263 EG-LAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC--KTHMALILREGR 339 (728)
Q Consensus 263 ~~-~~~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~--~~~lv~~~~~~g 339 (728)
.. .....+++||+.|++....++ ..+|+.++++ . ++.+.+... ........+. ++.|++....++
T Consensus 326 ~~~~~~p~wSPDG~~Laf~~~~~g------~~~I~v~dl~-~---g~~~~Lt~~--~~~~~~p~wSpDG~~L~f~~~~~g 393 (428)
T PRK01029 326 YRNSSCPAWSPDGKKIAFCSVIKG------VRQICVYDLA-T---GRDYQLTTS--PENKESPSWAIDSLHLVYSAGNSN 393 (428)
T ss_pred CCCccceeECCCCCEEEEEEcCCC------CcEEEEEECC-C---CCeEEccCC--CCCccceEECCCCCEEEEEECCCC
Confidence 32 235678899999999887543 3578888876 2 334444322 1223444454 467887777777
Q ss_pred eeEEEEEecCCC
Q 004839 340 TYRLCSVSLPLP 351 (728)
Q Consensus 340 ~~~l~~~~l~~~ 351 (728)
...|++++++++
T Consensus 394 ~~~L~~vdl~~g 405 (428)
T PRK01029 394 ESELYLISLITK 405 (428)
T ss_pred CceEEEEECCCC
Confidence 788999998754
No 32
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.69 E-value=5.2e-15 Score=159.77 Aligned_cols=245 Identities=14% Similarity=0.051 Sum_probs=153.2
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCcccc
Q 004839 466 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHH 545 (728)
Q Consensus 466 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~ 545 (728)
......+...+|..+.+.++.|.. ..+.|+||++||..+.. ..|......|+++||.|+.+|+||+|.+...+.
T Consensus 109 ~~~~~~~~~~~~~~l~~~~~~p~~---~~~~~~Vl~lHG~~~~~--~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~~~- 182 (395)
T PLN02652 109 RWATSLFYGARRNALFCRSWAPAA---GEMRGILIIIHGLNEHS--GRYLHFAKQLTSCGFGVYAMDWIGHGGSDGLHG- 182 (395)
T ss_pred eEEEEEEECCCCCEEEEEEecCCC---CCCceEEEEECCchHHH--HHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCC-
Confidence 345666888899899988887753 23457999999975532 335667788999999999999999997643211
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCC---ceeEEEEeCCcccchhhc------
Q 004839 546 DGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD---LFRAVVLEVPFLDATNTL------ 616 (728)
Q Consensus 546 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~---~f~a~v~~~p~~d~~~~~------ 616 (728)
.........+|+.+.++++..+. +..++.++||||||.+++.++. +|+ +++++|+.+|..++....
T Consensus 183 --~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~~~~~~ 257 (395)
T PLN02652 183 --YVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHPIVGAV 257 (395)
T ss_pred --CCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchHHHHHH
Confidence 00011122466677777776431 2347999999999999987765 564 799999999986543200
Q ss_pred ------cCCCCCCCc-cc------------ccccCCCCC------HH-HHHHHHccC-cccccccCCCCCeEEEEcCCCC
Q 004839 617 ------LYPILPLIA-AD------------YEEFGYPGD------ID-DFHAIRNYS-PYDNIQKDVLYPAVLVTSSFNT 669 (728)
Q Consensus 617 ------~~~~~~~~~-~~------------~~~~g~p~~------~~-~~~~~~~~s-P~~~i~~~~~~P~lli~g~~D~ 669 (728)
..+...... .. ...+.+|.. .. ..+.+.... ...++.+ ++.|+|++||..|.
T Consensus 258 ~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~-I~vPvLIi~G~~D~ 336 (395)
T PLN02652 258 APIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKS-VTVPFMVLHGTADR 336 (395)
T ss_pred HHHHHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhccc-CCCCEEEEEeCCCC
Confidence 000000000 00 000011100 00 000000000 0123344 89999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCchhhhHHHHHHHHHHHHHhhc
Q 004839 670 RFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 727 (728)
Q Consensus 670 ~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~afl~~~l~ 727 (728)
.||+.++.++++++.... ..+.++++++|........-+......+||..+++
T Consensus 337 vvp~~~a~~l~~~~~~~~-----k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 337 VTDPLASQDLYNEAASRH-----KDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred CCCHHHHHHHHHhcCCCC-----ceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999986543 23444799999853322334445667899998874
No 33
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=2.9e-14 Score=155.23 Aligned_cols=265 Identities=11% Similarity=0.068 Sum_probs=171.0
Q ss_pred hhHHHHhCCCCCCCCCCCe--EeCCeEEEEEccCCCeeEEEEEEecCCCcccccCCCCCCCccCCCCCCCcEEEeecccc
Q 004839 39 PLAWLLSFPLLPSAGAPGD--LHHRRLYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQE 116 (728)
Q Consensus 39 ~~~~~~~~r~~~~~~~~p~--~~g~~~yy~~~~~g~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~ 116 (728)
.++|.|...|-+.- ..+. -.....|+.+..++..+. ++....++ ...++++..+
T Consensus 133 ~~aH~~~d~i~~~l-~~~~~~f~~r~~~v~~~~~~~~~~-l~~~d~dg--------------------~~~~~~~~~~-- 188 (419)
T PRK04043 133 FLAHKSAIDINDYL-KAPSIDWMKRKVVFSKYTGPKKSN-IVLADYTL--------------------TYQKVIVKGG-- 188 (419)
T ss_pred HHHHHHHHHHHHHh-CCCCcCceeeEEEEEEccCCCcce-EEEECCCC--------------------CceeEEccCC--
Confidence 37888888777654 3322 123456777644333333 33322222 1234444321
Q ss_pred cccCCceEEeeceeeCCCCCE-EEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCc
Q 004839 117 AERFGGYAYEELSEVSPDHKF-LAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRP 194 (728)
Q Consensus 117 ~~~~~~~~~~~~~~~SPDG~~-lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~ 194 (728)
....++|||||++ ++|+...++ ..+||++|+++|+..+++. .+......|||||+.|+|+.... ..
T Consensus 189 --------~~~~p~wSpDG~~~i~y~s~~~~--~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~--g~ 256 (419)
T PRK04043 189 --------LNIFPKWANKEQTAFYYTSYGER--KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPK--GQ 256 (419)
T ss_pred --------CeEeEEECCCCCcEEEEEEccCC--CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccC--CC
Confidence 2336789999996 666654333 3589999999999888765 44456789999999999986542 24
Q ss_pred ceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCceEEEEeecC
Q 004839 195 YQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHE 274 (728)
Q Consensus 195 ~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~dg 274 (728)
.+||.+++.++....+. .... ....+.|||||+.|+|.++..+..+||++|+++ ++.+.++.... ....+++||
T Consensus 257 ~~Iy~~dl~~g~~~~LT-~~~~--~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~--g~~~rlt~~g~-~~~~~SPDG 330 (419)
T PRK04043 257 PDIYLYDTNTKTLTQIT-NYPG--IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS--GSVEQVVFHGK-NNSSVSTYK 330 (419)
T ss_pred cEEEEEECCCCcEEEcc-cCCC--ccCccEECCCCCEEEEEECCCCCceEEEEECCC--CCeEeCccCCC-cCceECCCC
Confidence 68999999877533333 2211 224578999999999999987788999999987 55655554322 234788999
Q ss_pred CEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecCC
Q 004839 275 GFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPL 350 (728)
Q Consensus 275 ~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 350 (728)
+.+++.++..........++|+.++++ .+.++.|.....+. .-.+...++.|++....++...|..++++.
T Consensus 331 ~~Ia~~~~~~~~~~~~~~~~I~v~d~~----~g~~~~LT~~~~~~-~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 331 NYIVYSSRETNNEFGKNTFNLYLISTN----SDYIRRLTANGVNQ-FPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CEEEEEEcCCCcccCCCCcEEEEEECC----CCCeEECCCCCCcC-CeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 999998875421100113689998876 24455554332211 223555567888888778888899999864
No 34
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.66 E-value=3.9e-14 Score=156.37 Aligned_cols=263 Identities=13% Similarity=0.048 Sum_probs=172.7
Q ss_pred hhhHHHHhCCCCCCCCCCCeEeCCeEEEEEccCCCeeEEEEEEecCCCcccccCCCCCCCccCCCCCCCcEEEeeccccc
Q 004839 38 WPLAWLLSFPLLPSAGAPGDLHHRRLYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEA 117 (728)
Q Consensus 38 ~~~~~~~~~r~~~~~~~~p~~~g~~~yy~~~~~g~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~ 117 (728)
..++|.|...+-....+.|...+..++|.+..+++....++....++ +..+.|++.+.
T Consensus 133 ~~~a~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g--------------------~~~~~l~~~~~-- 190 (417)
T TIGR02800 133 RRVAHRIADAIYEKLTGERGAFSTRIAYVSKSGKSRRYELQVADYDG--------------------ANPQTITRSRE-- 190 (417)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCCEEEEEEEeCCCCcceEEEEcCCC--------------------CCCEEeecCCC--
Confidence 33666666666666667777777766666555445555555543322 23456666542
Q ss_pred ccCCceEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcce
Q 004839 118 ERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQ 196 (728)
Q Consensus 118 ~~~~~~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~ 196 (728)
.+..+.|||||++|||....++ ..+|+++|+++|+...+.. ......+.|+|||+.|+|+.... ...+
T Consensus 191 -------~~~~p~~Spdg~~la~~~~~~~--~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~--~~~~ 259 (417)
T TIGR02800 191 -------PILSPAWSPDGQKLAYVSFESG--KPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKD--GNPD 259 (417)
T ss_pred -------ceecccCCCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCC--CCcc
Confidence 2345679999999999875444 3679999999997655543 33456789999999999985432 2458
Q ss_pred eEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCC-ceEEEEeecCC
Q 004839 197 IYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEG 275 (728)
Q Consensus 197 v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~-~~~~~~~~dg~ 275 (728)
||.++++++....+.. .. .....+.|+|||++|++.+......+||++|+.+ ++.+.+..... .....++++|+
T Consensus 260 i~~~d~~~~~~~~l~~-~~--~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~--~~~~~l~~~~~~~~~~~~spdg~ 334 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTN-GP--GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG--GEVRRLTFRGGYNASPSWSPDGD 334 (417)
T ss_pred EEEEECCCCCEEECCC-CC--CCCCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCEEEeecCCCCccCeEECCCCC
Confidence 9999998875333321 11 1123468999999999988877677999999987 45566654332 23456788898
Q ss_pred EEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecC
Q 004839 276 FLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLP 349 (728)
Q Consensus 276 ~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~ 349 (728)
.+++.....+ .++|+.++++ . .+..++.......-..+...++.|++....++...+++++.+
T Consensus 335 ~i~~~~~~~~------~~~i~~~d~~-~----~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 335 LIAFVHREGG------GFNIAVMDLD-G----GGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EEEEEEccCC------ceEEEEEeCC-C----CCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 8888766432 3678888876 2 233344332211111345556788888888888888888754
No 35
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=5.8e-14 Score=155.45 Aligned_cols=205 Identities=15% Similarity=0.088 Sum_probs=143.6
Q ss_pred eeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCC
Q 004839 126 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 204 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t 204 (728)
+..++|||||++|||+...++ ..+||++|+++|+...++. .+....+.|||||+.|+|+.... ...+||++++.+
T Consensus 201 ~~~p~wSpDG~~la~~s~~~~--~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~--g~~~Iy~~d~~~ 276 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFEQK--RPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKD--GNPEIYVMDLAS 276 (430)
T ss_pred eeeeeECCCCCEEEEEEcCCC--CCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccC--CCceEEEEECCC
Confidence 567789999999999876544 4679999999998777654 33456799999999999986543 236899999988
Q ss_pred CCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecC-CceEEEEeecCCEEEEEEcC
Q 004839 205 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-GLAHCIVEHHEGFLYLFTDA 283 (728)
Q Consensus 205 ~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~-~~~~~~~~~dg~~l~~~tn~ 283 (728)
+.... +.... .....+.|||||+.|++.++..+..+||++|+.+ ++.+.++... ......+++||+.+++....
T Consensus 277 ~~~~~-lt~~~--~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~--g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~ 351 (430)
T PRK00178 277 RQLSR-VTNHP--AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG--GRAERVTFVGNYNARPRLSADGKTLVMVHRQ 351 (430)
T ss_pred CCeEE-cccCC--CCcCCeEECCCCCEEEEEECCCCCceEEEEECCC--CCEEEeecCCCCccceEECCCCCEEEEEEcc
Confidence 75333 22211 1224578999999999998877778999999987 4555555332 22234678999999988765
Q ss_pred CccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecCC
Q 004839 284 AKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPL 350 (728)
Q Consensus 284 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 350 (728)
++ .+.|+.+++. . +..+.+.....+... .+...++.+++....+|..+|+.++++.
T Consensus 352 ~~------~~~l~~~dl~-t---g~~~~lt~~~~~~~p-~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 352 DG------NFHVAAQDLQ-R---GSVRILTDTSLDESP-SVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred CC------ceEEEEEECC-C---CCEEEccCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEECCC
Confidence 43 3678888876 2 333433322122212 3455567888888888888999998753
No 36
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=7.8e-14 Score=153.47 Aligned_cols=263 Identities=13% Similarity=0.039 Sum_probs=168.0
Q ss_pred hhHHHHhCCCCCCCCCCCeEeCCeEEEEEccC-CCeeEEEEEEecCCCcccccCCCCCCCccCCCCCCCcEEEeeccccc
Q 004839 39 PLAWLLSFPLLPSAGAPGDLHHRRLYYRRVEE-GKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEA 117 (728)
Q Consensus 39 ~~~~~~~~r~~~~~~~~p~~~g~~~yy~~~~~-g~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~ 117 (728)
.++|.|...|-+.-...+-.-...+.|..... ++..+.++.-..++ ...+.++...
T Consensus 142 ~~ah~~~d~i~~~ltg~~g~f~~riayv~~~~~~~~~~~l~~~d~dg--------------------~~~~~lt~~~--- 198 (429)
T PRK03629 142 YAAHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG--------------------YNQFVVHRSP--- 198 (429)
T ss_pred HHHHHHHHHHHHHhcCCCCccCCeEEEEEeeCCCCcceeEEEEcCCC--------------------CCCEEeecCC---
Confidence 37888888777665555544445555554432 22223333322221 1223444321
Q ss_pred ccCCceEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcce
Q 004839 118 ERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQ 196 (728)
Q Consensus 118 ~~~~~~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~ 196 (728)
+ .+..++|||||++|||.....+ ..+|+++|+++|+...++. ......+.|||||+.|+|+.... ...+
T Consensus 199 ---~---~~~~p~wSPDG~~la~~s~~~g--~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~--g~~~ 268 (429)
T PRK03629 199 ---Q---PLMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT--GSLN 268 (429)
T ss_pred ---C---ceeeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCC--CCcE
Confidence 2 3567899999999999876544 3679999999998776654 44566799999999999985432 2347
Q ss_pred eEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCC-ceEEEEeecCC
Q 004839 197 IYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEG 275 (728)
Q Consensus 197 v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~-~~~~~~~~dg~ 275 (728)
||.+++.++....+. ... .....+.|||||++|++.+++....+||.+|+++ +..+.++.... .....+++||+
T Consensus 269 I~~~d~~tg~~~~lt-~~~--~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~--g~~~~lt~~~~~~~~~~~SpDG~ 343 (429)
T PRK03629 269 LYVMDLASGQIRQVT-DGR--SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING--GAPQRITWEGSQNQDADVSSDGK 343 (429)
T ss_pred EEEEECCCCCEEEcc-CCC--CCcCceEECCCCCEEEEEeCCCCCceEEEEECCC--CCeEEeecCCCCccCEEECCCCC
Confidence 999999877533332 221 1234679999999999999876677999999987 45556654322 22356789999
Q ss_pred EEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecCC
Q 004839 276 FLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPL 350 (728)
Q Consensus 276 ~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 350 (728)
.+++....++ ...|+.++++ .+.++.+.....+.. ..+...+..|++....++...|++++++.
T Consensus 344 ~Ia~~~~~~g------~~~I~~~dl~----~g~~~~Lt~~~~~~~-p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 344 FMVMVSSNGG------QQHIAKQDLA----TGGVQVLTDTFLDET-PSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred EEEEEEccCC------CceEEEEECC----CCCeEEeCCCCCCCC-ceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 9988876543 2568888776 234444432211111 13444456777777767777888888753
No 37
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.65 E-value=1.5e-14 Score=150.33 Aligned_cols=241 Identities=17% Similarity=0.167 Sum_probs=158.5
Q ss_pred EEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccc
Q 004839 467 CEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHD 546 (728)
Q Consensus 467 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~ 546 (728)
..+..+.+.||..+.+....+... +..+||++||..... ..|...+..|..+||.|+..|.||+|.+.+ .+.
T Consensus 9 ~~~~~~~~~d~~~~~~~~~~~~~~----~~g~Vvl~HG~~Eh~--~ry~~la~~l~~~G~~V~~~D~RGhG~S~r--~~r 80 (298)
T COG2267 9 RTEGYFTGADGTRLRYRTWAAPEP----PKGVVVLVHGLGEHS--GRYEELADDLAARGFDVYALDLRGHGRSPR--GQR 80 (298)
T ss_pred cccceeecCCCceEEEEeecCCCC----CCcEEEEecCchHHH--HHHHHHHHHHHhCCCEEEEecCCCCCCCCC--CCc
Confidence 344567888999988777655431 227999999975432 445667899999999999999999998754 111
Q ss_pred cccCCCCCcHHHHHHHHHHHHHcCC--CCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchh---hc-----
Q 004839 547 GRRTKKLNSIKDFISCARFLIEKEI--VKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATN---TL----- 616 (728)
Q Consensus 547 ~~~~~~~~~~~D~~~~~~~l~~~~~--~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~---~~----- 616 (728)
....+++|++..++.+++.-. .-..+++++||||||.+++.++.+++..+.++|+.+|++.+.. ..
T Consensus 81 ----g~~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~~~~~ 156 (298)
T COG2267 81 ----GHVDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLILARL 156 (298)
T ss_pred ----CCchhHHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHHHHHH
Confidence 122347777777777765422 1247899999999999999999999999999999999998872 00
Q ss_pred -------cCCCCCCCcc--cccccCC-CCCHHHHHHHHccCc----------------------cc-ccccCCCCCeEEE
Q 004839 617 -------LYPILPLIAA--DYEEFGY-PGDIDDFHAIRNYSP----------------------YD-NIQKDVLYPAVLV 663 (728)
Q Consensus 617 -------~~~~~~~~~~--~~~~~g~-p~~~~~~~~~~~~sP----------------------~~-~i~~~~~~P~lli 663 (728)
..+.++.... +...... ..+++..+.+.+ +| .. ... .++.|+||+
T Consensus 157 ~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~-dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~-~~~~PvLll 234 (298)
T COG2267 157 ALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEA-DPLIGVGGPVSRWVDLALLAGRVPALRDAP-AIALPVLLL 234 (298)
T ss_pred hcccccccccccccCcccccCcCcchhhcCHHHHHHHhc-CCccccCCccHHHHHHHHHhhcccchhccc-cccCCEEEE
Confidence 0112221110 0000000 011112222211 22 11 122 378999999
Q ss_pred EcCCCCCCC-HHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCchhhh--HHHHHHHHHHHHHhh
Q 004839 664 TSSFNTRFG-VWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQ--CKESALETAFLIKMM 726 (728)
Q Consensus 664 ~g~~D~~Vp-~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~--~~~~~~~~afl~~~l 726 (728)
+|+.|..|+ ...+.++++++.... ..+.+++++.|......++ -.......+||.+++
T Consensus 235 ~g~~D~vv~~~~~~~~~~~~~~~~~-----~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~ 295 (298)
T COG2267 235 QGGDDRVVDNVEGLARFFERAGSPD-----KELKVIPGAYHELLNEPDRAREEVLKDILAWLAEAL 295 (298)
T ss_pred ecCCCccccCcHHHHHHHHhcCCCC-----ceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhc
Confidence 999999999 688888888776654 2334489999985553233 555677789998875
No 38
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.65 E-value=1.3e-15 Score=157.44 Aligned_cols=215 Identities=19% Similarity=0.185 Sum_probs=138.6
Q ss_pred CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHH---------HHHHHHHCCeEEEEEcCCCCCCCCCccccc
Q 004839 476 DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS---------ELKSLLDRGWVVAFADVRGGGGGGKKWHHD 546 (728)
Q Consensus 476 dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~---------~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~ 546 (728)
||++|.+.+++| +....++.|+||..++ |+......... ....|+++||+|+..|.||.|+++..|...
T Consensus 1 DGv~L~adv~~P-~~~~~~~~P~il~~tp-Y~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~ 78 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADGGGPFPVILTRTP-YGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPM 78 (272)
T ss_dssp TS-EEEEEEEEE---TTSSSEEEEEEEES-STCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TT
T ss_pred CCCEEEEEEEec-CCCCCCcccEEEEccC-cCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccC
Confidence 899999999999 5456789999999886 33221010111 112399999999999999999987766543
Q ss_pred cccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchh-hccCCCC-CCC
Q 004839 547 GRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATN-TLLYPIL-PLI 624 (728)
Q Consensus 547 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~-~~~~~~~-~~~ 624 (728)
..++.+|..++++|+.+|++.+ .|||++|.||+|+.++.++.+.|..++|++..++..|+.. ....... ...
T Consensus 79 -----~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~~~~ 152 (272)
T PF02129_consen 79 -----SPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAFRLG 152 (272)
T ss_dssp -----SHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEEBCC
T ss_pred -----ChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCccccc
Confidence 4568899999999999998876 7999999999999999999988889999999999988875 2111111 000
Q ss_pred --ccc-----cc-cc---CCCCC---------------------------------HHHHHHHHccCcccccccCCCCCe
Q 004839 625 --AAD-----YE-EF---GYPGD---------------------------------IDDFHAIRNYSPYDNIQKDVLYPA 660 (728)
Q Consensus 625 --~~~-----~~-~~---g~p~~---------------------------------~~~~~~~~~~sP~~~i~~~~~~P~ 660 (728)
..| .. .. ..+.. +..-+.+.+.++..++.+ ++.|+
T Consensus 153 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-i~vP~ 231 (272)
T PF02129_consen 153 FFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDK-IDVPV 231 (272)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG---SEE
T ss_pred chhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhh-CCCCE
Confidence 011 00 00 00000 000122333444445565 89999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhCC-CCCCCccEEEEcCCCCC
Q 004839 661 VLVTSSFNTRFGVWEAAKWVARVREST-IYDPKRPILLNLTTDIV 704 (728)
Q Consensus 661 lli~g~~D~~Vp~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~gH~ 704 (728)
|+++|-.|.... .++.+.+++|+..+ ++ +.++ .-..+|+
T Consensus 232 l~v~Gw~D~~~~-~~~~~~~~~l~~~~~~~---~~Li-igpw~H~ 271 (272)
T PF02129_consen 232 LIVGGWYDTLFL-RGALRAYEALRAPGSKP---QRLI-IGPWTHG 271 (272)
T ss_dssp EEEEETTCSSTS-HHHHHHHHHHCTTSTC----EEEE-EESESTT
T ss_pred EEecccCCcccc-hHHHHHHHHhhcCCCCC---CEEE-EeCCCCC
Confidence 999999996666 89999999999877 32 2333 3456664
No 39
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.3e-13 Score=150.12 Aligned_cols=246 Identities=13% Similarity=0.072 Sum_probs=167.1
Q ss_pred CEEEEEEEcCCCcEEEEEEEECCCCceeccCccceeeeEEEecCCCE-EEEEEecCCCCcceeEEEECCCCCceeEEeee
Q 004839 136 KFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQA-LIYVVTDQNKRPYQIYCSIIGSTDEDALLLEE 214 (728)
Q Consensus 136 ~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~-l~y~~~~~~~~~~~v~~~~l~t~~~~~lv~~~ 214 (728)
.++||.+...|...++|+++|.++.....++.......+.|||||+. ++|++... +..+||++++.+++... +...
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~--~~~~Iyv~dl~tg~~~~-lt~~ 231 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGE--RKPTLYKYNLYTGKKEK-IASS 231 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccC--CCCEEEEEECCCCcEEE-EecC
Confidence 56777766445456899999999887665555445668999999996 77776542 23489999998875444 3322
Q ss_pred cCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCC-ceEEEEeecCCEEEEEEcCCccCCCCCce
Q 004839 215 SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGFLYLFTDAAKEGQEADNH 293 (728)
Q Consensus 215 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~-~~~~~~~~dg~~l~~~tn~~~~~~~~~~~ 293 (728)
. .....+.|||||+.|++........+||++|+++ +..++++.... .....+++||++++|.+++.+ ..
T Consensus 232 ~--g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~--g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g------~~ 301 (419)
T PRK04043 232 Q--GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT--KTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG------YP 301 (419)
T ss_pred C--CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC--CcEEEcccCCCccCccEECCCCCEEEEEECCCC------Cc
Confidence 2 2223478999999999998877778999999987 56777776543 455678999999999998754 36
Q ss_pred EEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecC------CeeEEEEEecCCCCCCcceeecccccccc
Q 004839 294 YLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREG------RTYRLCSVSLPLPAGKGVVHLKELHPHFL 367 (728)
Q Consensus 294 ~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~------g~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 367 (728)
+||.++++ . ++.+.+.... .. ...+...++.|+++.... +..+|+++++++++ . +.+
T Consensus 302 ~Iy~~dl~-~---g~~~rlt~~g-~~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~--------~~L 364 (419)
T PRK04043 302 NIFMKKLN-S---GSVEQVVFHG-KN-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY---I--------RRL 364 (419)
T ss_pred eEEEEECC-C---CCeEeCccCC-Cc-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC---e--------EEC
Confidence 79999887 2 3444444322 12 235666678888887664 44689999987643 1 112
Q ss_pred cCCCceeeeecCCCccCCCcEEEEEEccCCCCceEEEEECCCCeEEEEE
Q 004839 368 PLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQ 416 (728)
Q Consensus 368 ~~p~~~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~~~~~l~ 416 (728)
..... . ....+++|+..++|.... ..-..++.++++.+....|.
T Consensus 365 T~~~~-~---~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 365 TANGV-N---QFPRFSSDGGSIMFIKYL-GNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred CCCCC-c---CCeEECCCCCEEEEEEcc-CCcEEEEEEecCCCeeEEee
Confidence 11111 1 123467888888887554 44457999999776655554
No 40
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.2e-13 Score=152.74 Aligned_cols=250 Identities=9% Similarity=0.056 Sum_probs=168.7
Q ss_pred CCEEEEEEEcCCCc--EEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCCceeEE
Q 004839 135 HKFLAYTMYDKDND--YFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALL 211 (728)
Q Consensus 135 G~~lA~~~~~~g~e--~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~~lv 211 (728)
..+|||..+..+.. ..+|+++|.+++....++. ...+..+.|||||+.|+|+.... ...+||++++.++....+.
T Consensus 165 ~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~--g~~~i~~~dl~~g~~~~l~ 242 (435)
T PRK05137 165 DTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYAN--GRPRVYLLDLETGQRELVG 242 (435)
T ss_pred CCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecC--CCCEEEEEECCCCcEEEee
Confidence 56899998765532 6789999998887777665 34678899999999999997543 2368999999887533332
Q ss_pred eeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCC-ceEEEEeecCCEEEEEEcCCccCCCC
Q 004839 212 LEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGFLYLFTDAAKEGQEA 290 (728)
Q Consensus 212 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~-~~~~~~~~dg~~l~~~tn~~~~~~~~ 290 (728)
.... ....+.|||||+.|++..+..+..+||++|+++ +..+.++.... .....+++||+.++|.++..+
T Consensus 243 -~~~g--~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~--~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g----- 312 (435)
T PRK05137 243 -NFPG--MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS--GTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG----- 312 (435)
T ss_pred -cCCC--cccCcEECCCCCEEEEEEecCCCceEEEEECCC--CceEEccCCCCccCceeEcCCCCEEEEEECCCC-----
Confidence 2111 123578999999999988777778999999987 55667765442 234677899999999887654
Q ss_pred CceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecCCCCCCcceeecccccccccCC
Q 004839 291 DNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLP 370 (728)
Q Consensus 291 ~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p 370 (728)
..+|+.++++ .+..+.+........-..+...++.|++.....+..+|++++++++. . ..+...
T Consensus 313 -~~~Iy~~d~~----g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~---~--------~~lt~~ 376 (435)
T PRK05137 313 -SPQLYVMNAD----GSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG---E--------RILTSG 376 (435)
T ss_pred -CCeEEEEECC----CCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc---e--------EeccCC
Confidence 2568888875 23344444322111112344456788887776777789999875432 0 111111
Q ss_pred CceeeeecCCCccCCCcEEEEEEccCCCC--ceEEEEECCCCeEEEEE
Q 004839 371 KYVSQIVPGPNYDYYSSTMRFAISSPVMP--DAVVDYDLSYGKWNIIQ 416 (728)
Q Consensus 371 ~~~~~i~~~~~~~~~~~~~~~~~ss~~~p--~~~~~~~~~~~~~~~l~ 416 (728)
... ....+++|+..++|........ ..+|.+|+.+++.+.+.
T Consensus 377 ~~~----~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 377 FLV----EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred CCC----CCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 111 1334677888888887765553 58999999887766554
No 41
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.3e-13 Score=151.07 Aligned_cols=258 Identities=9% Similarity=0.053 Sum_probs=167.5
Q ss_pred ceeeCCCCCEEEEEEEcCCCc----EEEEEEEECCCCceeccCc-cceeeeEEEecCCCE--EEEEEecCCCCcceeEEE
Q 004839 128 LSEVSPDHKFLAYTMYDKDND----YFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQA--LIYVVTDQNKRPYQIYCS 200 (728)
Q Consensus 128 ~~~~SPDG~~lA~~~~~~g~e----~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~--l~y~~~~~~~~~~~v~~~ 200 (728)
.+.++ +++|||+....+.+ ...||++|.++++..+++. ......+.|||||+. |+|++... ...+||++
T Consensus 141 ~~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~--g~~~I~~~ 216 (428)
T PRK01029 141 VPGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKL--GVPKIFLG 216 (428)
T ss_pred CCccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccC--CCceEEEE
Confidence 34456 89999998654422 4689999999998888776 345578999999987 56676543 24589999
Q ss_pred ECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEE--eCCCC-CCCeEEeeecC--CceEEEEeecCC
Q 004839 201 IIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLI--NAADP-FSGLTLIWECE--GLAHCIVEHHEG 275 (728)
Q Consensus 201 ~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~--dl~~~-~~~~~~l~~~~--~~~~~~~~~dg~ 275 (728)
++.+++...+.. .... ...+.|||||++|++.++..+..++|+. +++++ .+.++.++... ....+.+++||+
T Consensus 217 ~l~~g~~~~lt~-~~g~--~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~ 293 (428)
T PRK01029 217 SLENPAGKKILA-LQGN--QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGT 293 (428)
T ss_pred ECCCCCceEeec-CCCC--ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCC
Confidence 998876444432 1221 1347899999999999876666678875 55442 23556666443 223567899999
Q ss_pred EEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCC-ceEEEEEeeCCEEEEEEecCCeeEEEEEecCCCCCC
Q 004839 276 FLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQG-LVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGK 354 (728)
Q Consensus 276 ~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~-~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~ 354 (728)
.|+|.++.++ ..+|+.++++ .. +.....+..... ..--.+..+++.|++....+|..+|+++++.+++-
T Consensus 294 ~Laf~s~~~g------~~~ly~~~~~-~~--g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~- 363 (428)
T PRK01029 294 RLVFVSNKDG------RPRIYIMQID-PE--GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD- 363 (428)
T ss_pred EEEEEECCCC------CceEEEEECc-cc--ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-
Confidence 9999987654 2468877764 11 111222322211 11123445567888888878888999999876531
Q ss_pred cceeecccccccccC-CCceeeeecCCCccCCCcEEEEEEccCCCCceEEEEECCCCeEEEEEe
Q 004839 355 GVVHLKELHPHFLPL-PKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQ 417 (728)
Q Consensus 355 ~~~~~~~~~~~~~~~-p~~~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~~~~~l~~ 417 (728)
..+.. +.... ...+++|+..++|.... .....+|.+|+.+++.+.|..
T Consensus 364 ----------~~Lt~~~~~~~----~p~wSpDG~~L~f~~~~-~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 364 ----------YQLTTSPENKE----SPSWAIDSLHLVYSAGN-SNESELYLISLITKKTRKIVI 412 (428)
T ss_pred ----------EEccCCCCCcc----ceEECCCCCEEEEEECC-CCCceEEEEECCCCCEEEeec
Confidence 11111 11111 23356788888877654 344789999999888877764
No 42
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.1e-13 Score=152.32 Aligned_cols=204 Identities=14% Similarity=0.087 Sum_probs=141.6
Q ss_pred eeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCC
Q 004839 126 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 204 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t 204 (728)
+..++|||||++|||+.+..+ ..+||++|+.+|+...++. .+....+.|||||+.|+|+.... ...+||.+++.+
T Consensus 198 v~~p~wSPDG~~la~~s~~~~--~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~--g~~~Iy~~d~~~ 273 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFESK--KPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRD--GNSQIYTVNADG 273 (427)
T ss_pred cccceEcCCCCEEEEEEccCC--CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccC--CCceEEEEECCC
Confidence 557889999999999876544 4679999999998776653 44567899999999999976543 246899999876
Q ss_pred CCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecC-CceEEEEeecCCEEEEEEcC
Q 004839 205 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-GLAHCIVEHHEGFLYLFTDA 283 (728)
Q Consensus 205 ~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~-~~~~~~~~~dg~~l~~~tn~ 283 (728)
+....+. ... .....+.|||||++|++.++..+..+||.+++.+ +..+.++... ......+++||+.+++.++.
T Consensus 274 ~~~~~lt-~~~--~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~--g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 274 SGLRRLT-QSS--GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG--GAAQRVTFTGSYNTSPRISPDGKLLAYISRV 348 (427)
T ss_pred CCcEECC-CCC--CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC--CceEEEecCCCCcCceEECCCCCEEEEEEcc
Confidence 6433322 211 1223578999999999988776778999999876 4455555322 22345678999999988775
Q ss_pred CccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecC
Q 004839 284 AKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLP 349 (728)
Q Consensus 284 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~ 349 (728)
++ .+.|+.+++. . +..+.+.....+.. -.+...++.|++....+|...|+.++++
T Consensus 349 ~g------~~~I~v~d~~-~---g~~~~lt~~~~~~~-p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 349 GG------AFKLYVQDLA-T---GQVTALTDTTRDES-PSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred CC------cEEEEEEECC-C---CCeEEccCCCCccC-ceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 43 3678888875 2 33343332211111 1344445788888888888889999875
No 43
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.3e-13 Score=152.38 Aligned_cols=264 Identities=13% Similarity=0.049 Sum_probs=169.0
Q ss_pred hhhHHHHhCCCCCCCCCCCeEeCCeEEEEEccCC--CeeEEEEEEecCCCcccccCCCCCCCccCCCCCCCcEEEeeccc
Q 004839 38 WPLAWLLSFPLLPSAGAPGDLHHRRLYYRRVEEG--KQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQ 115 (728)
Q Consensus 38 ~~~~~~~~~r~~~~~~~~p~~~g~~~yy~~~~~g--~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~ 115 (728)
..++|-+...|-+.....+-.-+..+.|....++ +....++....++ +..+.|...+
T Consensus 145 r~~ah~~~d~i~~~~tg~~g~f~~~ia~v~~~~~~~~~~~~l~i~D~~g--------------------~~~~~lt~~~- 203 (433)
T PRK04922 145 RQAAHQIADAIYEKITGVPGAFWTRIAYVTVSGAGGAMRYALQVADSDG--------------------YNPQTILRSA- 203 (433)
T ss_pred HHHHHHHHHHHHHHHcCCCCcccceEEEEEEeCCCCCceEEEEEECCCC--------------------CCceEeecCC-
Confidence 3477888777777666655555555555543322 2222333322211 1223333221
Q ss_pred ccccCCceEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCc
Q 004839 116 EAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRP 194 (728)
Q Consensus 116 ~~~~~~~~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~ 194 (728)
. .+..++|||||++|||.....+ ..+||++|+++|+...++. ......+.|||||+.|+|+.... ..
T Consensus 204 -----~---~v~~p~wSpDg~~la~~s~~~~--~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~--g~ 271 (433)
T PRK04922 204 -----E---PILSPAWSPDGKKLAYVSFERG--RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRD--GN 271 (433)
T ss_pred -----C---ccccccCCCCCCEEEEEecCCC--CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCC--CC
Confidence 1 3567889999999999876544 4679999999998766654 33456789999999999986543 23
Q ss_pred ceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecC-CceEEEEeec
Q 004839 195 YQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-GLAHCIVEHH 273 (728)
Q Consensus 195 ~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~-~~~~~~~~~d 273 (728)
.+||++++.++....+. ... .....+.|||||++|++.++..+..+||++|+.+ +..+.++... ......+++|
T Consensus 272 ~~Iy~~d~~~g~~~~lt-~~~--~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~--g~~~~lt~~g~~~~~~~~SpD 346 (433)
T PRK04922 272 PEIYVMDLGSRQLTRLT-NHF--GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG--GSAERLTFQGNYNARASVSPD 346 (433)
T ss_pred ceEEEEECCCCCeEECc-cCC--CCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCeEEeecCCCCccCEEECCC
Confidence 58999999887533322 211 1123578999999999998877677899999987 4556665322 2234577899
Q ss_pred CCEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecCC
Q 004839 274 EGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPL 350 (728)
Q Consensus 274 g~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 350 (728)
|+.+++.+..++ .+.|+.++++ . +..+.+.....+..+ .+...++.+++....++...|+.++++.
T Consensus 347 G~~Ia~~~~~~~------~~~I~v~d~~-~---g~~~~Lt~~~~~~~p-~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 347 GKKIAMVHGSGG------QYRIAVMDLS-T---GSVRTLTPGSLDESP-SFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CCEEEEEECCCC------ceeEEEEECC-C---CCeEECCCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEECCC
Confidence 999999876432 3678888775 2 334433222111111 3444456788887778888999998753
No 44
>PRK11460 putative hydrolase; Provisional
Probab=99.62 E-value=3.2e-14 Score=143.01 Aligned_cols=185 Identities=15% Similarity=0.059 Sum_probs=127.3
Q ss_pred CCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCC----CCCCccccccccCCCCCc-------HHHHHHH
Q 004839 494 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGG----GGGKKWHHDGRRTKKLNS-------IKDFISC 562 (728)
Q Consensus 494 ~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g----~~G~~~~~~~~~~~~~~~-------~~D~~~~ 562 (728)
...|+||++||..++. ..|......|+.+++.+.++.++|.. +.|..|+.... ...... .+.+.+.
T Consensus 14 ~~~~~vIlLHG~G~~~--~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~~-~~~~~~~~~~~~~~~~l~~~ 90 (232)
T PRK11460 14 PAQQLLLLFHGVGDNP--VAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQG-ITEDNRQARVAAIMPTFIET 90 (232)
T ss_pred CCCcEEEEEeCCCCCh--HHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCCC-CCccchHHHHHHHHHHHHHH
Confidence 3468999999864432 45667778888888766666677643 23567764311 111111 2334456
Q ss_pred HHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCCCCcccccccCCCCCHHHHHH
Q 004839 563 ARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHA 642 (728)
Q Consensus 563 ~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~ 642 (728)
++++.++..++++||+++|+|+||.+++.++.++|++++++|+.+|.+. . .+.
T Consensus 91 i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~--------~------------~~~------- 143 (232)
T PRK11460 91 VRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA--------S------------LPE------- 143 (232)
T ss_pred HHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc--------c------------ccc-------
Confidence 6777777678899999999999999999999889998888887665211 0 010
Q ss_pred HHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCchhhhHHHHHHHHHHH
Q 004839 643 IRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFL 722 (728)
Q Consensus 643 ~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~afl 722 (728)
... .+.|++++||..|+.||++.+.+++++|++.+.+ .....++++||.+.. +......+||
T Consensus 144 ---------~~~-~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~---~~~~~~~~~gH~i~~-----~~~~~~~~~l 205 (232)
T PRK11460 144 ---------TAP-TATTIHLIHGGEDPVIDVAHAVAAQEALISLGGD---VTLDIVEDLGHAIDP-----RLMQFALDRL 205 (232)
T ss_pred ---------ccc-CCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCC---eEEEEECCCCCCCCH-----HHHHHHHHHH
Confidence 011 3679999999999999999999999999998742 122227999998743 2334456777
Q ss_pred HHhh
Q 004839 723 IKMM 726 (728)
Q Consensus 723 ~~~l 726 (728)
.+.|
T Consensus 206 ~~~l 209 (232)
T PRK11460 206 RYTV 209 (232)
T ss_pred HHHc
Confidence 7665
No 45
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.61 E-value=1.8e-14 Score=163.64 Aligned_cols=134 Identities=17% Similarity=0.212 Sum_probs=107.9
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcC--ccc-HHHHHHHHHCCeEEEEEcCCCCCCCCCccccccc
Q 004839 472 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLD--KRW-RSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGR 548 (728)
Q Consensus 472 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~--~~~-~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~ 548 (728)
++.+||.+|.+.++.|++ .++.|+||++||. +.... ..+ ....+.|+++||+|+++|+||+|.++..+...+
T Consensus 1 i~~~DG~~L~~~~~~P~~---~~~~P~Il~~~gy-g~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~~~- 75 (550)
T TIGR00976 1 VPMRDGTRLAIDVYRPAG---GGPVPVILSRTPY-GKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDLLG- 75 (550)
T ss_pred CcCCCCCEEEEEEEecCC---CCCCCEEEEecCC-CCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEecC-
Confidence 357899999999999975 3478999999974 32211 111 224578999999999999999998866543321
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhh
Q 004839 549 RTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNT 615 (728)
Q Consensus 549 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~ 615 (728)
....+|+.++++|+.++++.+ .||+++|+||||++++.++..+|+.++|+|+.+++.|+...
T Consensus 76 ----~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~~ 137 (550)
T TIGR00976 76 ----SDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYRD 137 (550)
T ss_pred ----cccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhHh
Confidence 357899999999999998877 79999999999999999999889999999999999887753
No 46
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.59 E-value=2.9e-14 Score=150.72 Aligned_cols=228 Identities=24% Similarity=0.188 Sum_probs=148.1
Q ss_pred ECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCC-cCccc-HHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccC
Q 004839 473 PSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGEL-LDKRW-RSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT 550 (728)
Q Consensus 473 ~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~-~~~~~-~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~ 550 (728)
....+..+++.++.| ......+.|+|||+|||.... ..... ......++..|+.|+.+|||-..+.
T Consensus 57 ~~~~~~~~~~~~y~p-~~~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~----------- 124 (312)
T COG0657 57 AGPSGDGVPVRVYRP-DRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH----------- 124 (312)
T ss_pred cCCCCCceeEEEECC-CCCCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC-----------
Confidence 445666688888888 323445689999999974432 22233 3345666679999999999977763
Q ss_pred CCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEeCccHHHHHHHHHhCCC----ceeEEEEeCCcccchhhccCCCCC-
Q 004839 551 KKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINCCPD----LFRAVVLEVPFLDATNTLLYPILP- 622 (728)
Q Consensus 551 ~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~~p~----~f~a~v~~~p~~d~~~~~~~~~~~- 622 (728)
.....++|+.+++.|+.++. -+|+++|+++|+|+||.+++.++.+-.+ ..++.++.+|.+|... . .....
T Consensus 125 ~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~-~-~~~~~~ 202 (312)
T COG0657 125 PFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS-S-AASLPG 202 (312)
T ss_pred CCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc-c-ccchhh
Confidence 34568999999999999774 4799999999999999999998765332 5689999999998764 0 11110
Q ss_pred ------CCccccc----c-c-CCCCCHHHHHHHHccCcccccc-cCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCC
Q 004839 623 ------LIAADYE----E-F-GYPGDIDDFHAIRNYSPYDNIQ-KDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIY 689 (728)
Q Consensus 623 ------~~~~~~~----~-~-g~p~~~~~~~~~~~~sP~~~i~-~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~ 689 (728)
+...... . + +...+... -..+|+.... . ---|+++++++.|...+ +++.+.++|+++|++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----p~~spl~~~~~~-~lPP~~i~~a~~D~l~~--~~~~~a~~L~~agv~ 275 (312)
T COG0657 203 YGEADLLDAAAILAWFADLYLGAAPDRED----PEASPLASDDLS-GLPPTLIQTAEFDPLRD--EGEAYAERLRAAGVP 275 (312)
T ss_pred cCCccccCHHHHHHHHHHHhCcCccccCC----CccCcccccccc-CCCCEEEEecCCCcchh--HHHHHHHHHHHcCCe
Confidence 1000000 0 0 11000000 1245654332 2 14567888888887666 999999999999964
Q ss_pred CCCccEEEEcCCCCCCCc--hhhhHHHHHHHHHHHHH
Q 004839 690 DPKRPILLNLTTDIVEEN--RYLQCKESALETAFLIK 724 (728)
Q Consensus 690 ~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~afl~~ 724 (728)
..+..+++..|++.. ..........+..|+..
T Consensus 276 ---~~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 276 ---VELRVYPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred ---EEEEEeCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 222228899998743 32333334445566553
No 47
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2.4e-13 Score=150.26 Aligned_cols=199 Identities=17% Similarity=0.167 Sum_probs=138.6
Q ss_pred eEeCCeEEEEEccCCCeeEEEEEEecCCCcccccCCCCCCCccCCCCCCCcEEEeecccccccCCceEEeeceeeCCCCC
Q 004839 57 DLHHRRLYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHK 136 (728)
Q Consensus 57 ~~~g~~~yy~~~~~g~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~ 136 (728)
+++|.+++|..+..|. +.+|+..... ++.+.+.+.. + ....++|||||+
T Consensus 226 SPDG~~La~~s~~~g~--~~L~~~dl~t--------------------g~~~~lt~~~------g---~~~~~~wSPDG~ 274 (448)
T PRK04792 226 SPDGRKLAYVSFENRK--AEIFVQDIYT--------------------QVREKVTSFP------G---INGAPRFSPDGK 274 (448)
T ss_pred CCCCCEEEEEEecCCC--cEEEEEECCC--------------------CCeEEecCCC------C---CcCCeeECCCCC
Confidence 3889998888765443 4566554332 2333333221 1 123578999999
Q ss_pred EEEEEEEcCCCcEEEEEEEECCCCceeccCcc-ceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCCceeEEeeec
Q 004839 137 FLAYTMYDKDNDYFTLSVRNLNSGALCSKPQA-VRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEES 215 (728)
Q Consensus 137 ~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~~lv~~~~ 215 (728)
+|||+.+.+| ..+||++|+++++..+++.. .....+.|+|||++|+|+.... ...+||++++.+++...+.++.
T Consensus 275 ~La~~~~~~g--~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~--g~~~Iy~~dl~~g~~~~Lt~~g- 349 (448)
T PRK04792 275 KLALVLSKDG--QPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERG--GKPQIYRVNLASGKVSRLTFEG- 349 (448)
T ss_pred EEEEEEeCCC--CeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCC--CCceEEEEECCCCCEEEEecCC-
Confidence 9999877665 37899999999988777652 3456789999999999986432 2358999999887644444322
Q ss_pred CcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCceEEEEeecCCEEEEEEcCCccCCCCCceEE
Q 004839 216 NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYL 295 (728)
Q Consensus 216 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~tn~~~~~~~~~~~~l 295 (728)
.....+.|||||++|++........+||++|+++ +..+.++.........+++||+.+++.++.++ ...|
T Consensus 350 --~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~--g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g------~~~l 419 (448)
T PRK04792 350 --EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET--GAMQVLTSTRLDESPSVAPNGTMVIYSTTYQG------KQVL 419 (448)
T ss_pred --CCCcCeeECCCCCEEEEEEecCCceEEEEEECCC--CCeEEccCCCCCCCceECCCCCEEEEEEecCC------ceEE
Confidence 1223468999999999987766667899999988 45666665433334568899999999887654 2457
Q ss_pred EEeeCC
Q 004839 296 LRCPVD 301 (728)
Q Consensus 296 ~~~~~~ 301 (728)
+.++.+
T Consensus 420 ~~~~~~ 425 (448)
T PRK04792 420 AAVSID 425 (448)
T ss_pred EEEECC
Confidence 777765
No 48
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=3.5e-13 Score=148.45 Aligned_cols=198 Identities=14% Similarity=0.136 Sum_probs=137.5
Q ss_pred EeCCeEEEEEccCCCeeEEEEEEecCCCcccccCCCCCCCccCCCCCCCcEEEeecccccccCCceEEeeceeeCCCCCE
Q 004839 58 LHHRRLYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKF 137 (728)
Q Consensus 58 ~~g~~~yy~~~~~g~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~ 137 (728)
|+|.+++|..+..++ +.+|...... +..+.+.+.. + ....+.|||||++
T Consensus 205 PDG~~la~~s~~~~~--~~I~~~dl~~--------------------g~~~~l~~~~------g---~~~~~~~SPDG~~ 253 (427)
T PRK02889 205 PDGTKLAYVSFESKK--PVVYVHDLAT--------------------GRRRVVANFK------G---SNSAPAWSPDGRT 253 (427)
T ss_pred CCCCEEEEEEccCCC--cEEEEEECCC--------------------CCEEEeecCC------C---CccceEECCCCCE
Confidence 789998888765433 4455544322 3333333221 1 2346789999999
Q ss_pred EEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCCceeEEeeecC
Q 004839 138 LAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESN 216 (728)
Q Consensus 138 lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~~lv~~~~~ 216 (728)
|||+.+.+|. .+||++|+++++..+++. ......+.|||||+.|+|++... ...+||.+++.++....+.+..
T Consensus 254 la~~~~~~g~--~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~--g~~~Iy~~~~~~g~~~~lt~~g-- 327 (427)
T PRK02889 254 LAVALSRDGN--SQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRG--GAPQIYRMPASGGAAQRVTFTG-- 327 (427)
T ss_pred EEEEEccCCC--ceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCC--CCcEEEEEECCCCceEEEecCC--
Confidence 9998776664 789999999988776654 22346789999999999985432 2358999998776544444332
Q ss_pred cceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCceEEEEeecCCEEEEEEcCCccCCCCCceEEE
Q 004839 217 ENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLL 296 (728)
Q Consensus 217 ~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~ 296 (728)
.+...+.|||||++|++.+......+|+++|+.+ ++.+.++.........+++||+.|++.++..+ ...|+
T Consensus 328 -~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~--g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g------~~~l~ 398 (427)
T PRK02889 328 -SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT--GQVTALTDTTRDESPSFAPNGRYILYATQQGG------RSVLA 398 (427)
T ss_pred -CCcCceEECCCCCEEEEEEccCCcEEEEEEECCC--CCeEEccCCCCccCceECCCCCEEEEEEecCC------CEEEE
Confidence 2334578999999999988776667899999987 45666665433445678899999999988654 24577
Q ss_pred EeeCC
Q 004839 297 RCPVD 301 (728)
Q Consensus 297 ~~~~~ 301 (728)
.++++
T Consensus 399 ~~~~~ 403 (427)
T PRK02889 399 AVSSD 403 (427)
T ss_pred EEECC
Confidence 77665
No 49
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.4e-12 Score=143.59 Aligned_cols=248 Identities=11% Similarity=0.060 Sum_probs=162.6
Q ss_pred CEEEEEEEcCC-CcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCCceeEEee
Q 004839 136 KFLAYTMYDKD-NDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLE 213 (728)
Q Consensus 136 ~~lA~~~~~~g-~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~~lv~~ 213 (728)
++|||.....+ ...++|+++|.+++....++. ......+.|||||+.|+|++... ...+||++++.+++...+. .
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~--g~~~i~i~dl~~G~~~~l~-~ 240 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVA-S 240 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCCeEEcc-C
Confidence 78999876443 336789999999887666655 34678899999999999986532 2357999999877533332 2
Q ss_pred ecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecC-CceEEEEeecCCEEEEEEcCCccCCCCCc
Q 004839 214 ESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-GLAHCIVEHHEGFLYLFTDAAKEGQEADN 292 (728)
Q Consensus 214 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~-~~~~~~~~~dg~~l~~~tn~~~~~~~~~~ 292 (728)
... ....+.|||||++|++.....+..+||++|+++ +..+.++... ......+++||+.|++.++..+ .
T Consensus 241 ~~~--~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t--g~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g------~ 310 (429)
T PRK03629 241 FPR--HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS--GQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG------R 310 (429)
T ss_pred CCC--CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC--CCEEEccCCCCCcCceEECCCCCEEEEEeCCCC------C
Confidence 111 123478999999999987766667899999987 5566666543 2345678899999999988653 2
Q ss_pred eEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecCCCCCCcceeecccccccccCCCc
Q 004839 293 HYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKY 372 (728)
Q Consensus 293 ~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~ 372 (728)
.+||.++++ . +..+.+........-..+...++.|++....++...|+++++.+++ . ..+..+..
T Consensus 311 ~~Iy~~d~~-~---g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~------~-----~~Lt~~~~ 375 (429)
T PRK03629 311 PQVYKVNIN-G---GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG------V-----QVLTDTFL 375 (429)
T ss_pred ceEEEEECC-C---CCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC------e-----EEeCCCCC
Confidence 578888876 2 2334443222111112344456788888777777889999987543 1 11211111
Q ss_pred eeeeecCCCccCCCcEEEEEEccCCCCceEEEEECCCCeEEEEE
Q 004839 373 VSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQ 416 (728)
Q Consensus 373 ~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~~~~~l~ 416 (728)
. ....+++|+..++|.... .....++.+++..+..+.|.
T Consensus 376 ~----~~p~~SpDG~~i~~~s~~-~~~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 376 D----ETPSIAPNGTMVIYSSSQ-GMGSVLNLVSTDGRFKARLP 414 (429)
T ss_pred C----CCceECCCCCEEEEEEcC-CCceEEEEEECCCCCeEECc
Confidence 1 123456788877776543 22356888888666555554
No 50
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.58 E-value=6.7e-14 Score=136.95 Aligned_cols=192 Identities=15% Similarity=0.179 Sum_probs=124.2
Q ss_pred EEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHH--HHHHHHH-CCeEEEEEcCCCCCC--CCCccccccccCCCCCc
Q 004839 481 PLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS--ELKSLLD-RGWVVAFADVRGGGG--GGKKWHHDGRRTKKLNS 555 (728)
Q Consensus 481 ~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~--~~~~l~~-~Gy~v~~~d~RG~g~--~G~~~~~~~~~~~~~~~ 555 (728)
.+.|+.|++.. .++.|+||.+||+.+.. ..|.. ....|++ +||+|+.|+...... ..-.|.. .....+..+
T Consensus 2 ~Y~lYvP~~~~-~~~~PLVv~LHG~~~~a--~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~-~~~~~g~~d 77 (220)
T PF10503_consen 2 SYRLYVPPGAP-RGPVPLVVVLHGCGQSA--EDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFS-DDQQRGGGD 77 (220)
T ss_pred cEEEecCCCCC-CCCCCEEEEeCCCCCCH--HHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccc-cccccCccc
Confidence 45678888653 35789999999975543 22322 2456776 699999999653322 2234444 222334456
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCCCCcccccccCCCC
Q 004839 556 IKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPG 635 (728)
Q Consensus 556 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~p~ 635 (728)
...+.+.+++++++.-+|++||.+.|.|+||.|+..++..+||+|+|+...+|..--.. ... ........-|...
T Consensus 78 ~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a---~~~--~~a~~~m~~g~~~ 152 (220)
T PF10503_consen 78 VAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCA---ASG--ASALSAMRSGPRP 152 (220)
T ss_pred hhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccc---cCc--ccHHHHhhCCCCC
Confidence 66677889999999999999999999999999999999999999999998887532111 000 0000000112211
Q ss_pred CHHHHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhC
Q 004839 636 DIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRES 686 (728)
Q Consensus 636 ~~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~ 686 (728)
.+.....-...++. ....|.+++||..|..|.+..+.++.++....
T Consensus 153 ~p~~~~~a~~~~g~-----~~~~P~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 153 APAAAWGARSDAGA-----YPGYPRIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred ChHHHHHhhhhccC-----CCCCCEEEEecCCCCccCcchHHHHHHHHHHc
Confidence 11111111111111 12358999999999999999999999988764
No 51
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.57 E-value=7.5e-14 Score=129.59 Aligned_cols=231 Identities=14% Similarity=0.137 Sum_probs=160.8
Q ss_pred CCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCc
Q 004839 463 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKK 542 (728)
Q Consensus 463 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~ 542 (728)
....-|+++...+|..+++++++..+ ...|+++++|+.-|. ++-......-.+.+.+..|++++|||-|.+...
T Consensus 50 ~n~pye~i~l~T~D~vtL~a~~~~~E-----~S~pTlLyfh~NAGN-mGhr~~i~~~fy~~l~mnv~ivsYRGYG~S~Gs 123 (300)
T KOG4391|consen 50 FNMPYERIELRTRDKVTLDAYLMLSE-----SSRPTLLYFHANAGN-MGHRLPIARVFYVNLKMNVLIVSYRGYGKSEGS 123 (300)
T ss_pred cCCCceEEEEEcCcceeEeeeeeccc-----CCCceEEEEccCCCc-ccchhhHHHHHHHHcCceEEEEEeeccccCCCC
Confidence 34567889999999999999988732 367999999985443 221112223456678999999999998865222
Q ss_pred cccccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCC
Q 004839 543 WHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILP 622 (728)
Q Consensus 543 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~ 622 (728)
-.+. .-.-|-.++++||..++..|..+|.++|.|.||..+..+++...++..|+|...-|+.+..++-.--+|
T Consensus 124 psE~-------GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~v~p 196 (300)
T KOG4391|consen 124 PSEE-------GLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPLVFP 196 (300)
T ss_pred cccc-------ceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhheecc
Confidence 2221 234688899999999999999999999999999999999999899999999999888875433111112
Q ss_pred CCcccccccCCCCCHHHHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCC
Q 004839 623 LIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTD 702 (728)
Q Consensus 623 ~~~~~~~~~g~p~~~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g 702 (728)
+.......+ -++ ..++-+..+.+ .+.|.|++.|..|..|||.+-.++++.+..+.+ .+..+|++.
T Consensus 197 ~~~k~i~~l-------c~k--n~~~S~~ki~~-~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~~K-----rl~eFP~gt 261 (300)
T KOG4391|consen 197 FPMKYIPLL-------CYK--NKWLSYRKIGQ-CRMPFLFISGLKDELVPPVMMRQLYELCPSRTK-----RLAEFPDGT 261 (300)
T ss_pred chhhHHHHH-------HHH--hhhcchhhhcc-ccCceEEeecCccccCCcHHHHHHHHhCchhhh-----hheeCCCCc
Confidence 110000000 001 12233334444 689999999999999999999999999987662 222279999
Q ss_pred CCCCc-hhhhHHHHHHHHHHHHH
Q 004839 703 IVEEN-RYLQCKESALETAFLIK 724 (728)
Q Consensus 703 H~~~~-~~~~~~~~~~~~afl~~ 724 (728)
|.... ....++. +-.||++
T Consensus 262 HNDT~i~dGYfq~---i~dFlaE 281 (300)
T KOG4391|consen 262 HNDTWICDGYFQA---IEDFLAE 281 (300)
T ss_pred cCceEEeccHHHH---HHHHHHH
Confidence 98654 3333332 2356654
No 52
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=4.5e-13 Score=148.01 Aligned_cols=198 Identities=15% Similarity=0.160 Sum_probs=139.1
Q ss_pred EeCCeEEEEEccCCCeeEEEEEEecCCCcccccCCCCCCCccCCCCCCCcEEEeecccccccCCceEEeeceeeCCCCCE
Q 004839 58 LHHRRLYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKF 137 (728)
Q Consensus 58 ~~g~~~yy~~~~~g~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~ 137 (728)
++|.+++|..+..+ .+.+|+..... +..+.+.+.. + ....++|||||++
T Consensus 213 pDg~~la~~s~~~~--~~~l~~~dl~~--------------------g~~~~l~~~~------g---~~~~~~~SpDG~~ 261 (433)
T PRK04922 213 PDGKKLAYVSFERG--RSAIYVQDLAT--------------------GQRELVASFR------G---INGAPSFSPDGRR 261 (433)
T ss_pred CCCCEEEEEecCCC--CcEEEEEECCC--------------------CCEEEeccCC------C---CccCceECCCCCE
Confidence 88999999876654 34555544322 2333333321 1 1335789999999
Q ss_pred EEEEEEcCCCcEEEEEEEECCCCceeccCcc-ceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCCceeEEeeecC
Q 004839 138 LAYTMYDKDNDYFTLSVRNLNSGALCSKPQA-VRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESN 216 (728)
Q Consensus 138 lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~~lv~~~~~ 216 (728)
|+|+.+.+|+ .+||++|+++|+..+++.. .....+.|+|||+.|+|++.... ..+||.+++.+++...+.+..
T Consensus 262 l~~~~s~~g~--~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g--~~~iy~~dl~~g~~~~lt~~g-- 335 (433)
T PRK04922 262 LALTLSRDGN--PEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG--RPQIYRVAASGGSAERLTFQG-- 335 (433)
T ss_pred EEEEEeCCCC--ceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCC--CceEEEEECCCCCeEEeecCC--
Confidence 9999876664 6799999999988776652 33467899999999999864322 348999999877544444332
Q ss_pred cceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCceEEEEeecCCEEEEEEcCCccCCCCCceEEE
Q 004839 217 ENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLL 296 (728)
Q Consensus 217 ~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~ 296 (728)
.+...+.|||||++|++.........|+++|+++ +..+.++.........+++||+.+++.++..+ ...|+
T Consensus 336 -~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~--g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g------~~~L~ 406 (433)
T PRK04922 336 -NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST--GSVRTLTPGSLDESPSFAPNGSMVLYATREGG------RGVLA 406 (433)
T ss_pred -CCccCEEECCCCCEEEEEECCCCceeEEEEECCC--CCeEECCCCCCCCCceECCCCCEEEEEEecCC------ceEEE
Confidence 2233578999999999987755567899999987 45667765443344577899999999888643 35788
Q ss_pred EeeCC
Q 004839 297 RCPVD 301 (728)
Q Consensus 297 ~~~~~ 301 (728)
.++++
T Consensus 407 ~~~~~ 411 (433)
T PRK04922 407 AVSTD 411 (433)
T ss_pred EEECC
Confidence 88775
No 53
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.56 E-value=1.1e-13 Score=145.08 Aligned_cols=240 Identities=15% Similarity=0.183 Sum_probs=142.3
Q ss_pred CCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCc
Q 004839 463 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKK 542 (728)
Q Consensus 463 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~ 542 (728)
..+..+++.++-. |.+|++++..|++ +++.|+||++-|. .+-....+......|+.+|++++.+|.+|.|..- .
T Consensus 161 ~~~~i~~v~iP~e-g~~I~g~LhlP~~---~~p~P~VIv~gGl-Ds~qeD~~~l~~~~l~~rGiA~LtvDmPG~G~s~-~ 234 (411)
T PF06500_consen 161 SDYPIEEVEIPFE-GKTIPGYLHLPSG---EKPYPTVIVCGGL-DSLQEDLYRLFRDYLAPRGIAMLTVDMPGQGESP-K 234 (411)
T ss_dssp SSSEEEEEEEEET-TCEEEEEEEESSS---SS-EEEEEEE--T-TS-GGGGHHHHHCCCHHCT-EEEEE--TTSGGGT-T
T ss_pred CCCCcEEEEEeeC-CcEEEEEEEcCCC---CCCCCEEEEeCCc-chhHHHHHHHHHHHHHhCCCEEEEEccCCCcccc-c
Confidence 3567888888865 5899999998873 4778988776654 3322222333445788999999999999999642 1
Q ss_pred cccccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCccc-chh-hccCCC
Q 004839 543 WHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD-ATN-TLLYPI 620 (728)
Q Consensus 543 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d-~~~-~~~~~~ 620 (728)
|- .. ...-.=..++++||.+.+++|.+||+++|.|+||+.+..++..++++++|+|+..|+++ +.+ ......
T Consensus 235 ~~----l~--~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~~~~~ 308 (411)
T PF06500_consen 235 WP----LT--QDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPEWQQR 308 (411)
T ss_dssp T-----S---S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HHHHTT
T ss_pred CC----CC--cCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHHHHhc
Confidence 11 11 11222345789999999999999999999999999999999878899999999988654 332 111122
Q ss_pred CCCCcc-cc-cccCCCC--CHHHHHHHHccCcccc--c-ccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCc
Q 004839 621 LPLIAA-DY-EEFGYPG--DIDDFHAIRNYSPYDN--I-QKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKR 693 (728)
Q Consensus 621 ~~~~~~-~~-~~~g~p~--~~~~~~~~~~~sP~~~--i-~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~ 693 (728)
.|.... .. ..+|... +......+.++|-... + ..+..+|+|.+.+..|+.+|.+++.-++..= ..| +
T Consensus 309 ~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~lia~~s-~~g-----k 382 (411)
T PF06500_consen 309 VPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSPIEDSRLIAESS-TDG-----K 382 (411)
T ss_dssp S-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS-HHHHHHHHHTB-TT------E
T ss_pred CCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCCHHHHHHHHhcC-CCC-----c
Confidence 232110 00 1234332 1222345677787543 3 2337889999999999999888876554322 222 3
Q ss_pred cEEEEcCCC-CCCCchhhhHHHHHHHHHHHHHhh
Q 004839 694 PILLNLTTD-IVEENRYLQCKESALETAFLIKMM 726 (728)
Q Consensus 694 ~~~~~~~~g-H~~~~~~~~~~~~~~~~afl~~~l 726 (728)
.+.+ +... |. ..-......+.||..+|
T Consensus 383 ~~~~-~~~~~~~-----gy~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 383 ALRI-PSKPLHM-----GYPQALDEIYKWLEDKL 410 (411)
T ss_dssp EEEE--SSSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred eeec-CCCcccc-----chHHHHHHHHHHHHHhc
Confidence 3333 3332 43 23344556789999876
No 54
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=2e-12 Score=143.23 Aligned_cols=258 Identities=10% Similarity=0.099 Sum_probs=166.9
Q ss_pred EeeceeeCCCCCEEEEEEEcC--CCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDK--DNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 201 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~--g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~ 201 (728)
.+.+.... -.++|||..... +++.++|+++|.++++...++. ......+.|||||+.|+|++... ...+||+++
T Consensus 153 ~ltg~~g~-f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~--~~~~l~~~~ 229 (430)
T PRK00178 153 KLTGIKGA-FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQ--KRPRIFVQN 229 (430)
T ss_pred HHhCCCcc-ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCC--CCCEEEEEE
Confidence 34444433 567799976533 2457899999999887666544 34567899999999999986542 245899999
Q ss_pred CCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecC-CceEEEEeecCCEEEEE
Q 004839 202 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-GLAHCIVEHHEGFLYLF 280 (728)
Q Consensus 202 l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~-~~~~~~~~~dg~~l~~~ 280 (728)
+.++.... +..... ....+.|||||++|++..+..+..+||++|+++ +..+.++... ......+++||+.++|.
T Consensus 230 l~~g~~~~-l~~~~g--~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~--~~~~~lt~~~~~~~~~~~spDg~~i~f~ 304 (430)
T PRK00178 230 LDTGRREQ-ITNFEG--LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS--RQLSRVTNHPAIDTEPFWGKDGRTLYFT 304 (430)
T ss_pred CCCCCEEE-ccCCCC--CcCCeEECCCCCEEEEEEccCCCceEEEEECCC--CCeEEcccCCCCcCCeEECCCCCEEEEE
Confidence 98875333 222211 122478999999999988777678999999987 4566666443 23346778999999999
Q ss_pred EcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecCCCCCCcceeec
Q 004839 281 TDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLK 360 (728)
Q Consensus 281 tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~ 360 (728)
++..+ ...|+.++++ .++++.+...........+...++.|++....++...|+++++.+++ .
T Consensus 305 s~~~g------~~~iy~~d~~----~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~---~---- 367 (430)
T PRK00178 305 SDRGG------KPQIYKVNVN----GGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS---V---- 367 (430)
T ss_pred ECCCC------CceEEEEECC----CCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC---E----
Confidence 87654 3578888875 23445444322111122345556788888877777789999987643 1
Q ss_pred ccccccccCCCceeeeecCCCccCCCcEEEEEEccCCCCceEEEEECCCCeEEEEE
Q 004839 361 ELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQ 416 (728)
Q Consensus 361 ~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~~~~~l~ 416 (728)
..+....... ...+++++..++|+..... -..+|.++...+..+.+.
T Consensus 368 ----~~lt~~~~~~----~p~~spdg~~i~~~~~~~g-~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 368 ----RILTDTSLDE----SPSVAPNGTMLIYATRQQG-RGVLMLVSINGRVRLPLP 414 (430)
T ss_pred ----EEccCCCCCC----CceECCCCCEEEEEEecCC-ceEEEEEECCCCceEECc
Confidence 1111111100 2245678888877654322 246889988665544443
No 55
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.56 E-value=1.7e-13 Score=145.59 Aligned_cols=237 Identities=12% Similarity=0.077 Sum_probs=136.3
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCc--------------------cc----HHHHHHHHHCCeE
Q 004839 472 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDK--------------------RW----RSELKSLLDRGWV 527 (728)
Q Consensus 472 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~--------------------~~----~~~~~~l~~~Gy~ 527 (728)
|.+.||..|......|+ .+..+|+++||-.+..... .| ...++.|+++||.
T Consensus 2 ~~~~~g~~l~~~~~~~~-----~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~ 76 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVK-----NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYS 76 (332)
T ss_pred ccCCCCCeEEEeeeecc-----CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCc
Confidence 56789999988776664 2346899999843333100 11 3457899999999
Q ss_pred EEEEcCCCCCCCCCccccccccCCCCCcHHHHHH----HHHHHHHc------------------CCCCCCcEEEEEeCcc
Q 004839 528 VAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFIS----CARFLIEK------------------EIVKEHKLAGWGYSAG 585 (728)
Q Consensus 528 v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~----~~~~l~~~------------------~~~d~~ri~i~G~S~G 585 (728)
|+.+|.||+|.....-.. .+. ...++|+++ .++.+.+. .+-...++.++|||||
T Consensus 77 V~~~D~rGHG~S~~~~~~--~g~--~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmG 152 (332)
T TIGR01607 77 VYGLDLQGHGESDGLQNL--RGH--INCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMG 152 (332)
T ss_pred EEEecccccCCCcccccc--ccc--hhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCc
Confidence 999999999965322000 110 124555544 44443321 1111357999999999
Q ss_pred HHHHHHHHHhCCC--------ceeEEEEeCCcccchhh--------------------ccCCCCCCCc-cccc-------
Q 004839 586 GLLVAAAINCCPD--------LFRAVVLEVPFLDATNT--------------------LLYPILPLIA-ADYE------- 629 (728)
Q Consensus 586 G~~~~~~~~~~p~--------~f~a~v~~~p~~d~~~~--------------------~~~~~~~~~~-~~~~------- 629 (728)
|.+++.++.++++ .++++|+.+|.+.+... ...+.+.... .++.
T Consensus 153 g~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~ 232 (332)
T TIGR01607 153 GNIALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPYVND 232 (332)
T ss_pred cHHHHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChhhhh
Confidence 9999988765432 58899988887543110 0011111000 0000
Q ss_pred cc-CCCC------CHHHHHHHHccCc--ccccccCC--CCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEE
Q 004839 630 EF-GYPG------DIDDFHAIRNYSP--YDNIQKDV--LYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLN 698 (728)
Q Consensus 630 ~~-g~p~------~~~~~~~~~~~sP--~~~i~~~~--~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~ 698 (728)
.+ .+|. .......+..... ...+.. + +.|+|+++|+.|..|++..+.++++++...+ ..+.++
T Consensus 233 ~~~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~-i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~~~-----~~l~~~ 306 (332)
T TIGR01607 233 IIKFDKFRYDGGITFNLASELIKATDTLDCDIDY-IPKDIPILFIHSKGDCVCSYEGTVSFYNKLSISN-----KELHTL 306 (332)
T ss_pred HHhcCccccCCcccHHHHHHHHHHHHHHHhhHhh-CCCCCCEEEEEeCCCCccCHHHHHHHHHhccCCC-----cEEEEE
Confidence 00 0110 0011111111110 012222 3 6899999999999999999999888776543 334447
Q ss_pred cCCCCCCCchhhhHHHHHHHHHHHH
Q 004839 699 LTTDIVEENRYLQCKESALETAFLI 723 (728)
Q Consensus 699 ~~~gH~~~~~~~~~~~~~~~~afl~ 723 (728)
++++|.......+-+....+.+||.
T Consensus 307 ~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 307 EDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CCCCCCCccCCCHHHHHHHHHHHhh
Confidence 9999987553333444566778875
No 56
>PRK10985 putative hydrolase; Provisional
Probab=99.54 E-value=3.5e-13 Score=143.10 Aligned_cols=244 Identities=18% Similarity=0.135 Sum_probs=143.9
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCcccc
Q 004839 466 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHH 545 (728)
Q Consensus 466 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~ 545 (728)
..++..+...||..+.......+. ...+.|+||++||..+..........+..|+++||.|+++|+||+|+.......
T Consensus 30 ~~~~~~~~~~dg~~~~l~w~~~~~--~~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~~ 107 (324)
T PRK10985 30 TPYWQRLELPDGDFVDLAWSEDPA--QARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLHR 107 (324)
T ss_pred CcceeEEECCCCCEEEEecCCCCc--cCCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCCcc
Confidence 334455677899877654322111 223468999999976654333234467889999999999999999865322111
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCc--eeEEEEeCCcccchhhc--cC---
Q 004839 546 DGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDL--FRAVVLEVPFLDATNTL--LY--- 618 (728)
Q Consensus 546 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~--f~a~v~~~p~~d~~~~~--~~--- 618 (728)
.......+|+.++++++.++. ...++.++|+|+||.+++.++.++++. ++++|+.++..++.... ..
T Consensus 108 ----~~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~~~ 181 (324)
T PRK10985 108 ----IYHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQGF 181 (324)
T ss_pred ----eECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhhhH
Confidence 111235799999999998753 236799999999999888877766543 78888888776643100 00
Q ss_pred ------------------------CCCCCCc------cccccc----CCCC--CHHHHHHHHccCcccccccCCCCCeEE
Q 004839 619 ------------------------PILPLIA------ADYEEF----GYPG--DIDDFHAIRNYSPYDNIQKDVLYPAVL 662 (728)
Q Consensus 619 ------------------------~~~~~~~------~~~~~~----g~p~--~~~~~~~~~~~sP~~~i~~~~~~P~ll 662 (728)
...+... ....+| ..+. -....+++...++...+.+ ++.|+|+
T Consensus 182 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~~-i~~P~li 260 (324)
T PRK10985 182 SRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLNQ-IRKPTLI 260 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHhC-CCCCEEE
Confidence 0000000 000001 0110 0112345555666666665 8999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCc-----hhhhHHHHHHHHHHHHHhh
Q 004839 663 VTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN-----RYLQCKESALETAFLIKMM 726 (728)
Q Consensus 663 i~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~-----~~~~~~~~~~~~afl~~~l 726 (728)
|+|..|+.+++.....+.+... + ..+.+.+++||..-. ....+-+ ....+||...+
T Consensus 261 i~g~~D~~~~~~~~~~~~~~~~--~-----~~~~~~~~~GH~~~~~g~~~~~~~w~~-~~~~~~~~~~~ 321 (324)
T PRK10985 261 IHAKDDPFMTHEVIPKPESLPP--N-----VEYQLTEHGGHVGFVGGTLLKPQMWLE-QRIPDWLTTYL 321 (324)
T ss_pred EecCCCCCCChhhChHHHHhCC--C-----eEEEECCCCCceeeCCCCCCCCCccHH-HHHHHHHHHhh
Confidence 9999999998766655432221 1 122236789997322 1122221 22467776654
No 57
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=2.4e-12 Score=141.99 Aligned_cols=258 Identities=15% Similarity=0.045 Sum_probs=159.3
Q ss_pred chhhHHHHhCCCCCCCCCCCeEeCCeEEEEEccCCCe-eEEEEEEecCCCcccccCCCCCCCccCCCCCCCcEEEeeccc
Q 004839 37 RWPLAWLLSFPLLPSAGAPGDLHHRRLYYRRVEEGKQ-YLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQ 115 (728)
Q Consensus 37 ~~~~~~~~~~r~~~~~~~~p~~~g~~~yy~~~~~g~e-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~ 115 (728)
...++|.+..+|.+.....+-.-+..+.|.....++. -..++....++ ...+.|...+
T Consensus 145 ~r~~ah~~~d~i~~~ltg~~g~f~~ria~v~~~~~~~~~~~i~i~d~dg--------------------~~~~~lt~~~- 203 (429)
T PRK01742 145 LRYGAHTVSDEVFEKLTAIRGAFRTRIAYVVQKNGGSQPYEVRVADYDG--------------------FNQFIVNRSS- 203 (429)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccCCEEEEEEEEcCCCceEEEEEECCCC--------------------CCceEeccCC-
Confidence 3448899998888887777777788776655443322 12222222211 1123333221
Q ss_pred ccccCCceEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCc
Q 004839 116 EAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRP 194 (728)
Q Consensus 116 ~~~~~~~~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~ 194 (728)
+ .+..++|||||++|||+...++ ..+|+++|+++|+...++. .+....++|||||+.|+|+.... ..
T Consensus 204 -----~---~v~~p~wSPDG~~la~~s~~~~--~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~--g~ 271 (429)
T PRK01742 204 -----Q---PLMSPAWSPDGSKLAYVSFENK--KSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKD--GV 271 (429)
T ss_pred -----C---ccccceEcCCCCEEEEEEecCC--CcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecC--Cc
Confidence 2 3567889999999999875433 4679999999997655443 34456799999999999986432 23
Q ss_pred ceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCceEEEEeecC
Q 004839 195 YQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHE 274 (728)
Q Consensus 195 ~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~dg 274 (728)
.+||.+++.++....+. .. ......+.|||||++|++.++..+..+||.++..+ +..+.+... .....+++||
T Consensus 272 ~~Iy~~d~~~~~~~~lt-~~--~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~--~~~~~l~~~--~~~~~~SpDG 344 (429)
T PRK01742 272 LNIYVMGANGGTPSQLT-SG--AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG--GGASLVGGR--GYSAQISADG 344 (429)
T ss_pred EEEEEEECCCCCeEeec-cC--CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCeEEecCC--CCCccCCCCC
Confidence 57999999776533332 21 11234689999999999998877778999999876 334444221 1234568999
Q ss_pred CEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecC
Q 004839 275 GFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLP 349 (728)
Q Consensus 275 ~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~ 349 (728)
+.+++... + .++.+++. .+.++.+........ -.+...++.|++...+++...+..++.+
T Consensus 345 ~~ia~~~~-~---------~i~~~Dl~----~g~~~~lt~~~~~~~-~~~sPdG~~i~~~s~~g~~~~l~~~~~~ 404 (429)
T PRK01742 345 KTLVMING-D---------NVVKQDLT----SGSTEVLSSTFLDES-PSISPNGIMIIYSSTQGLGKVLQLVSAD 404 (429)
T ss_pred CEEEEEcC-C---------CEEEEECC----CCCeEEecCCCCCCC-ceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 99888654 1 25666665 233443322211111 1234445566666655555556666543
No 58
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.53 E-value=5.7e-13 Score=138.22 Aligned_cols=240 Identities=13% Similarity=0.078 Sum_probs=154.0
Q ss_pred ceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCC---CCcCcccHHHHHHHHH-CCeEEEEEcCCCCCCCC
Q 004839 465 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYG---ELLDKRWRSELKSLLD-RGWVVAFADVRGGGGGG 540 (728)
Q Consensus 465 ~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~---~~~~~~~~~~~~~l~~-~Gy~v~~~d~RG~g~~G 540 (728)
+....+.+. ....++..++.|.......+.|+|||+|||-. +...+.|......+++ .+.+|+.+|||-..+
T Consensus 61 v~~~dv~~~--~~~~l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPE-- 136 (336)
T KOG1515|consen 61 VTSKDVTID--PFTNLPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPE-- 136 (336)
T ss_pred ceeeeeEec--CCCCeEEEEEcCCCCCcccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCC--
Confidence 334444444 34568888999987655478999999999732 2223445555666654 799999999996654
Q ss_pred CccccccccCCCCCcHHHHHHHHHHHHHc----CCCCCCcEEEEEeCccHHHHHHHHHhC------CCceeEEEEeCCcc
Q 004839 541 KKWHHDGRRTKKLNSIKDFISCARFLIEK----EIVKEHKLAGWGYSAGGLLVAAAINCC------PDLFRAVVLEVPFL 610 (728)
Q Consensus 541 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~----~~~d~~ri~i~G~S~GG~~~~~~~~~~------p~~f~a~v~~~p~~ 610 (728)
..-+..++|..+++.|+.++ ..+|++||+|+|.|+||.+|..++.+. +..+++.|+..|++
T Consensus 137 ---------h~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~ 207 (336)
T KOG1515|consen 137 ---------HPFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFF 207 (336)
T ss_pred ---------CCCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEeccc
Confidence 35667899999999999986 457999999999999999998876542 35789999999998
Q ss_pred cchhhccC------CCC-CCCc----ccccccCCCCCHHHHHHHHccCccc-----ccccCCCCC-eEEEEcCCCCCCCH
Q 004839 611 DATNTLLY------PIL-PLIA----ADYEEFGYPGDIDDFHAIRNYSPYD-----NIQKDVLYP-AVLVTSSFNTRFGV 673 (728)
Q Consensus 611 d~~~~~~~------~~~-~~~~----~~~~~~g~p~~~~~~~~~~~~sP~~-----~i~~~~~~P-~lli~g~~D~~Vp~ 673 (728)
........ ... .... .++. .-.|......+ ---.+|.. .... ...| +|++.++.|.. -
T Consensus 208 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~w~-~~lP~~~~~~~-~p~~np~~~~~~~d~~~-~~lp~tlv~~ag~D~L--~ 282 (336)
T KOG1515|consen 208 QGTDRTESEKQQNLNGSPELARPKIDKWWR-LLLPNGKTDLD-HPFINPVGNSLAKDLSG-LGLPPTLVVVAGYDVL--R 282 (336)
T ss_pred CCCCCCCHHHHHhhcCCcchhHHHHHHHHH-HhCCCCCCCcC-CccccccccccccCccc-cCCCceEEEEeCchhh--h
Confidence 76542211 000 0000 0000 11111100000 00012222 1111 3444 89999999943 3
Q ss_pred HHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCc--h--hhhHHHHHHHHHHHHHh
Q 004839 674 WEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN--R--YLQCKESALETAFLIKM 725 (728)
Q Consensus 674 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~--~--~~~~~~~~~~~afl~~~ 725 (728)
.++..++++|++.|++. .++.+++++|++.. . ....+......+|+.+.
T Consensus 283 D~~~~Y~~~Lkk~Gv~v---~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 283 DEGLAYAEKLKKAGVEV---TLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred hhhHHHHHHHHHcCCeE---EEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 78999999999999752 33338899999654 2 34555555567777653
No 59
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.53 E-value=1.6e-13 Score=127.35 Aligned_cols=145 Identities=16% Similarity=0.208 Sum_probs=107.7
Q ss_pred EEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCcE
Q 004839 498 GLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKL 577 (728)
Q Consensus 498 ~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri 577 (728)
+||++||+.+. ...|....+.|+++||.|+.+|+||.+... ...++.+.++++.+.. .|+++|
T Consensus 1 ~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-~~~~~i 63 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQPLAEALAEQGYAVVAFDYPGHGDSD--------------GADAVERVLADIRAGY-PDPDRI 63 (145)
T ss_dssp EEEEECTTTTT--THHHHHHHHHHHHTTEEEEEESCTTSTTSH--------------HSHHHHHHHHHHHHHH-CTCCEE
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEecCCCCccc--------------hhHHHHHHHHHHHhhc-CCCCcE
Confidence 58999997654 355778889999999999999999988641 1124444555543322 288999
Q ss_pred EEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCCCCcccccccCCCCCHHHHHHHHccCcccccccCCC
Q 004839 578 AGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVL 657 (728)
Q Consensus 578 ~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sP~~~i~~~~~ 657 (728)
+++|+|+||.+++.++.+. ..++++|+.+|+.+ . +. +.+ .+
T Consensus 64 ~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~------------------------~-~~------------~~~-~~ 104 (145)
T PF12695_consen 64 ILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPD------------------------S-ED------------LAK-IR 104 (145)
T ss_dssp EEEEETHHHHHHHHHHHHS-TTESEEEEESESSG------------------------C-HH------------HTT-TT
T ss_pred EEEEEccCcHHHHHHhhhc-cceeEEEEecCccc------------------------h-hh------------hhc-cC
Confidence 9999999999999999987 78999999888211 0 01 112 56
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCC
Q 004839 658 YPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIV 704 (728)
Q Consensus 658 ~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~ 704 (728)
.|+++++|..|..+|+++..+++++++.. ..++..++++|+
T Consensus 105 ~pv~~i~g~~D~~~~~~~~~~~~~~~~~~------~~~~~i~g~~H~ 145 (145)
T PF12695_consen 105 IPVLFIHGENDPLVPPEQVRRLYEALPGP------KELYIIPGAGHF 145 (145)
T ss_dssp SEEEEEEETT-SSSHHHHHHHHHHHHCSS------EEEEEETTS-TT
T ss_pred CcEEEEEECCCCcCCHHHHHHHHHHcCCC------cEEEEeCCCcCc
Confidence 69999999999999999999999999822 233337999995
No 60
>PLN02511 hydrolase
Probab=99.53 E-value=3.6e-13 Score=146.13 Aligned_cols=228 Identities=13% Similarity=0.053 Sum_probs=137.1
Q ss_pred ceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccc
Q 004839 465 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWH 544 (728)
Q Consensus 465 ~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~ 544 (728)
...++..+...||..+....+.+.........|+||++||..++.....+......++++||.|+++|+||+|+....
T Consensus 69 ~~~~re~l~~~DG~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~-- 146 (388)
T PLN02511 69 VRYRRECLRTPDGGAVALDWVSGDDRALPADAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPVT-- 146 (388)
T ss_pred CceeEEEEECCCCCEEEEEecCcccccCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCCC--
Confidence 344556677889988876443322111123458999999976654322223455667789999999999999975321
Q ss_pred cccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCc--eeEEEEeCCcccchhhc--cCCC
Q 004839 545 HDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDL--FRAVVLEVPFLDATNTL--LYPI 620 (728)
Q Consensus 545 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~--f~a~v~~~p~~d~~~~~--~~~~ 620 (728)
..........+|+.++++++..+. ...++.++|+|+||.+++.++.++|+. ++++|+.++..++.... ....
T Consensus 147 --~~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~~~~~~ 222 (388)
T PLN02511 147 --TPQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADEDFHKG 222 (388)
T ss_pred --CcCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHHHHhcc
Confidence 011112346789999999998652 235899999999999999999999986 77777776655541100 0000
Q ss_pred C--------------------------C--CCc------cccccc----CCCC--CHHHHHHHHccCcccccccCCCCCe
Q 004839 621 L--------------------------P--LIA------ADYEEF----GYPG--DIDDFHAIRNYSPYDNIQKDVLYPA 660 (728)
Q Consensus 621 ~--------------------------~--~~~------~~~~~~----g~p~--~~~~~~~~~~~sP~~~i~~~~~~P~ 660 (728)
+ + ... ....+| ..+. -....++|...|+...+.+ ++.|+
T Consensus 223 ~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~~yy~~~s~~~~L~~-I~vPt 301 (388)
T PLN02511 223 FNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVDAYYSNSSSSDSIKH-VRVPL 301 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHHHHHHHcCchhhhcc-CCCCe
Confidence 0 0 000 000000 0000 0001233455667777776 99999
Q ss_pred EEEEcCCCCCCCHHHHH-HHHHHHHhCCCCCCCccEEEEcCCCCCCC
Q 004839 661 VLVTSSFNTRFGVWEAA-KWVARVRESTIYDPKRPILLNLTTDIVEE 706 (728)
Q Consensus 661 lli~g~~D~~Vp~~~~~-~~~~~L~~~~~~~~~~~~~~~~~~gH~~~ 706 (728)
|+|+|..|+.+|..... .+.+.+. + ..+.+.+++||.+-
T Consensus 302 LiI~g~dDpi~p~~~~~~~~~~~~p--~-----~~l~~~~~gGH~~~ 341 (388)
T PLN02511 302 LCIQAANDPIAPARGIPREDIKANP--N-----CLLIVTPSGGHLGW 341 (388)
T ss_pred EEEEcCCCCcCCcccCcHhHHhcCC--C-----EEEEECCCcceecc
Confidence 99999999988875432 2222111 1 22333688999753
No 61
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.52 E-value=7.9e-13 Score=136.80 Aligned_cols=236 Identities=12% Similarity=0.105 Sum_probs=138.5
Q ss_pred EEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcC--cccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccc
Q 004839 469 QYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLD--KRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHD 546 (728)
Q Consensus 469 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~--~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~ 546 (728)
.+.+.. +|..+.+.+..|.+. +.|.||++|||+..... ..+...+..|+++||.|+.+|+||+|.+....
T Consensus 4 ~~~~~~-~~~~l~g~~~~p~~~----~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~~~--- 75 (274)
T TIGR03100 4 ALTFSC-EGETLVGVLHIPGAS----HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEGEN--- 75 (274)
T ss_pred eEEEEc-CCcEEEEEEEcCCCC----CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCC---
Confidence 466664 577899988888642 23567778887654322 22344578899999999999999999753221
Q ss_pred cccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCC----
Q 004839 547 GRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILP---- 622 (728)
Q Consensus 547 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~---- 622 (728)
.......+|+.++++++.++. ..-++|.++|+|+||++++.++.. +++++++|+.+|++............
T Consensus 76 ---~~~~~~~~d~~~~~~~l~~~~-~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~~~~~~~~~~~~~~ 150 (274)
T TIGR03100 76 ---LGFEGIDADIAAAIDAFREAA-PHLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTEAAQAASRIRHYYL 150 (274)
T ss_pred ---CCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccCCcccchHHHHHHHHH
Confidence 111234688999999987641 123679999999999999988764 57899999999975422100000000
Q ss_pred ---CC-ccccccc-CCCCCHH-HHHHHHc----cCc-----c---------cccccCCCCCeEEEEcCCCCCCCHHH---
Q 004839 623 ---LI-AADYEEF-GYPGDID-DFHAIRN----YSP-----Y---------DNIQKDVLYPAVLVTSSFNTRFGVWE--- 675 (728)
Q Consensus 623 ---~~-~~~~~~~-g~p~~~~-~~~~~~~----~sP-----~---------~~i~~~~~~P~lli~g~~D~~Vp~~~--- 675 (728)
.. ..+...+ |. ++.. ....+.. ..| . ..+.+ ++.|+|+++|+.|...+...
T Consensus 151 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~P~ll~~g~~D~~~~~~~~~~ 228 (274)
T TIGR03100 151 GQLLSADFWRKLLSGE-VNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLER-FQGPVLFILSGNDLTAQEFADSV 228 (274)
T ss_pred HHHhChHHHHHhcCCC-ccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHh-cCCcEEEEEcCcchhHHHHHHHh
Confidence 00 0000011 11 1100 0111111 111 0 12234 68999999999997543221
Q ss_pred --HHHHHHHHHhCCCCCCCccEEEEcCCCCCCCchhhhHHHHHHHHHHHHH
Q 004839 676 --AAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIK 724 (728)
Q Consensus 676 --~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~afl~~ 724 (728)
+.++.+.+...+ ..+..+++++|.......+-...+...+||.+
T Consensus 229 ~~~~~~~~~l~~~~-----v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 229 LGEPAWRGALEDPG-----IERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred ccChhhHHHhhcCC-----eEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 133334344333 23333789999775555555556667888853
No 62
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.51 E-value=1.6e-12 Score=136.80 Aligned_cols=129 Identities=19% Similarity=0.158 Sum_probs=90.7
Q ss_pred EEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccc
Q 004839 467 CEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHD 546 (728)
Q Consensus 467 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~ 546 (728)
...+.+...||..+...+. ..+ .+ ..|.||++||.+... ..|......|.++||.|+++|.||+|.+...
T Consensus 21 ~~~~~~~~~~~~~~~i~y~-~~G-~~--~~~~lvliHG~~~~~--~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~---- 90 (302)
T PRK00870 21 PHYVDVDDGDGGPLRMHYV-DEG-PA--DGPPVLLLHGEPSWS--YLYRKMIPILAAAGHRVIAPDLIGFGRSDKP---- 90 (302)
T ss_pred ceeEeecCCCCceEEEEEE-ecC-CC--CCCEEEEECCCCCch--hhHHHHHHHHHhCCCEEEEECCCCCCCCCCC----
Confidence 3446666667766554322 222 11 247899999975433 4577777888888999999999999975321
Q ss_pred cccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCc
Q 004839 547 GRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 609 (728)
Q Consensus 547 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~ 609 (728)
......+++++.+.+..++++- +.+++.++|||+||.+++.++.++|++++++|+.++.
T Consensus 91 --~~~~~~~~~~~a~~l~~~l~~l--~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 149 (302)
T PRK00870 91 --TRREDYTYARHVEWMRSWFEQL--DLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTG 149 (302)
T ss_pred --CCcccCCHHHHHHHHHHHHHHc--CCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCC
Confidence 1111235677776666666542 3468999999999999999999999999999988763
No 63
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.49 E-value=6.7e-13 Score=138.21 Aligned_cols=207 Identities=13% Similarity=0.057 Sum_probs=119.5
Q ss_pred ccEEEEEcCCCCCCcCcccH---HHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCC
Q 004839 496 NPGLLHGHGAYGELLDKRWR---SELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIV 572 (728)
Q Consensus 496 ~P~vv~~hGg~~~~~~~~~~---~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 572 (728)
.|.||++||...... .|. ..+..|++.||.|+++|+||+|.+...... ........+|+.+.++.+
T Consensus 30 ~~~ivllHG~~~~~~--~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~---~~~~~~~~~~l~~~l~~l------ 98 (282)
T TIGR03343 30 GEAVIMLHGGGPGAG--GWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVVMD---EQRGLVNARAVKGLMDAL------ 98 (282)
T ss_pred CCeEEEECCCCCchh--hHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCcCc---ccccchhHHHHHHHHHHc------
Confidence 467999999654332 232 234567788999999999999976332110 000111234444444332
Q ss_pred CCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchh-----------hccC-CCCCCC--cc-ccccc-CCC--
Q 004839 573 KEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATN-----------TLLY-PILPLI--AA-DYEEF-GYP-- 634 (728)
Q Consensus 573 d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~-----------~~~~-~~~~~~--~~-~~~~~-g~p-- 634 (728)
+.+++.++|+|+||.+++.++.++|++++++|+.+|...... .+.. ...+.. .. ....+ -++
T Consensus 99 ~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (282)
T TIGR03343 99 DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSL 178 (282)
T ss_pred CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCccc
Confidence 457999999999999999999999999999999887421100 0000 000000 00 00000 000
Q ss_pred CC--------------HHHHHHHH-c--cCc------ccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCC
Q 004839 635 GD--------------IDDFHAIR-N--YSP------YDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDP 691 (728)
Q Consensus 635 ~~--------------~~~~~~~~-~--~sP------~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~ 691 (728)
.. +.....+. . ..+ ...+.+ ++.|+|+++|+.|..||+..+.++++.+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~Pvlli~G~~D~~v~~~~~~~~~~~~~~~----- 252 (282)
T TIGR03343 179 ITEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGE-IKAKTLVTWGRDDRFVPLDHGLKLLWNMPDA----- 252 (282)
T ss_pred CcHHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhh-CCCCEEEEEccCCCcCCchhHHHHHHhCCCC-----
Confidence 00 01111111 0 111 123444 8999999999999999999999988887532
Q ss_pred CccEEEEcCCCCCCCc-hhhhHHHHHHHHHHHH
Q 004839 692 KRPILLNLTTDIVEEN-RYLQCKESALETAFLI 723 (728)
Q Consensus 692 ~~~~~~~~~~gH~~~~-~~~~~~~~~~~~afl~ 723 (728)
.+...+++||.... ....+ .....+||.
T Consensus 253 --~~~~i~~agH~~~~e~p~~~--~~~i~~fl~ 281 (282)
T TIGR03343 253 --QLHVFSRCGHWAQWEHADAF--NRLVIDFLR 281 (282)
T ss_pred --EEEEeCCCCcCCcccCHHHH--HHHHHHHhh
Confidence 23336899998644 33333 333557764
No 64
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.48 E-value=8.3e-13 Score=134.81 Aligned_cols=207 Identities=16% Similarity=0.158 Sum_probs=126.1
Q ss_pred CccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCC
Q 004839 495 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 574 (728)
Q Consensus 495 ~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 574 (728)
+.|+||++||..++. ..|......| .+||.|+++|+||+|.+.... ....+++|+...+..++++ .+.
T Consensus 12 ~~~~iv~lhG~~~~~--~~~~~~~~~l-~~~~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~~~~~i~~--~~~ 79 (257)
T TIGR03611 12 DAPVVVLSSGLGGSG--SYWAPQLDVL-TQRFHVVTYDHRGTGRSPGEL-------PPGYSIAHMADDVLQLLDA--LNI 79 (257)
T ss_pred CCCEEEEEcCCCcch--hHHHHHHHHH-HhccEEEEEcCCCCCCCCCCC-------cccCCHHHHHHHHHHHHHH--hCC
Confidence 458899999975543 3344444444 568999999999999764321 1123566766666655543 245
Q ss_pred CcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhh-----------ccCCCCCC----------Ccccccc---
Q 004839 575 HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNT-----------LLYPILPL----------IAADYEE--- 630 (728)
Q Consensus 575 ~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~-----------~~~~~~~~----------~~~~~~~--- 630 (728)
+++.++|+|+||++++.++.++|++++++|+.+++...... +....... ...+...
T Consensus 80 ~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (257)
T TIGR03611 80 ERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWISENAA 159 (257)
T ss_pred CcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHhhccch
Confidence 78999999999999999999999999999988875443110 00000000 0000000
Q ss_pred ---------cCC-CCCH---HHHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEE
Q 004839 631 ---------FGY-PGDI---DDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL 697 (728)
Q Consensus 631 ---------~g~-p~~~---~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~ 697 (728)
... .... .....+..++....+.+ ++.|+|+++|+.|..+|+.+++++++.+... .+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-------~~~~ 231 (257)
T TIGR03611 160 RLAADEAHALAHFPGKANVLRRINALEAFDVSARLDR-IQHPVLLIANRDDMLVPYTQSLRLAAALPNA-------QLKL 231 (257)
T ss_pred hhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcc-cCccEEEEecCcCcccCHHHHHHHHHhcCCc-------eEEE
Confidence 000 0000 01122233333344555 8999999999999999999999988876532 2333
Q ss_pred EcCCCCCCCc-hhhhHHHHHHHHHHHH
Q 004839 698 NLTTDIVEEN-RYLQCKESALETAFLI 723 (728)
Q Consensus 698 ~~~~gH~~~~-~~~~~~~~~~~~afl~ 723 (728)
.+++||.... ....+ .....+||.
T Consensus 232 ~~~~gH~~~~~~~~~~--~~~i~~fl~ 256 (257)
T TIGR03611 232 LPYGGHASNVTDPETF--NRALLDFLK 256 (257)
T ss_pred ECCCCCCccccCHHHH--HHHHHHHhc
Confidence 6899998543 33322 333456653
No 65
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.47 E-value=1.4e-13 Score=141.60 Aligned_cols=143 Identities=23% Similarity=0.240 Sum_probs=93.3
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCC------------cCcc----cHHHHHHHHHCC
Q 004839 462 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGEL------------LDKR----WRSELKSLLDRG 525 (728)
Q Consensus 462 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~------------~~~~----~~~~~~~l~~~G 525 (728)
.+.|+.|++.|...++..++++++.|++. +++.|+||++||-.+.. .... .......||++|
T Consensus 83 rdGY~~EKv~f~~~p~~~vpaylLvPd~~--~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~G 160 (390)
T PF12715_consen 83 RDGYTREKVEFNTTPGSRVPAYLLVPDGA--KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRG 160 (390)
T ss_dssp ETTEEEEEEEE--STTB-EEEEEEEETT----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTT
T ss_pred cCCeEEEEEEEEccCCeeEEEEEEecCCC--CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCC
Confidence 46799999999999999999999999975 57899999988731110 0000 123467899999
Q ss_pred eEEEEEcCCCCCCCCCcccccc-----------------ccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHH
Q 004839 526 WVVAFADVRGGGGGGKKWHHDG-----------------RRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLL 588 (728)
Q Consensus 526 y~v~~~d~RG~g~~G~~~~~~~-----------------~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~ 588 (728)
|+|+++|.+|.|+.|..=.... ....|...+ |.+.+++||..++.+|++|||++|+|+||+.
T Consensus 161 YVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~-ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~ 239 (390)
T PF12715_consen 161 YVVLAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAW-DDMRALDFLASLPEVDPDRIGCMGFSMGGYR 239 (390)
T ss_dssp SEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHH-HHHHHHHHHCT-TTEEEEEEEEEEEGGGHHH
T ss_pred CEEEEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHH-HHHHHHHHHhcCcccCccceEEEeecccHHH
Confidence 9999999999998765321111 000122233 4456899999999999999999999999999
Q ss_pred HHHHHHhCCCceeEEEEeCC
Q 004839 589 VAAAINCCPDLFRAVVLEVP 608 (728)
Q Consensus 589 ~~~~~~~~p~~f~a~v~~~p 608 (728)
++++++. .++++|+|+.+=
T Consensus 240 a~~LaAL-DdRIka~v~~~~ 258 (390)
T PF12715_consen 240 AWWLAAL-DDRIKATVANGY 258 (390)
T ss_dssp HHHHHHH--TT--EEEEES-
T ss_pred HHHHHHc-chhhHhHhhhhh
Confidence 9999997 567787776543
No 66
>PLN00021 chlorophyllase
Probab=99.45 E-value=7.1e-12 Score=130.83 Aligned_cols=183 Identities=17% Similarity=0.158 Sum_probs=122.0
Q ss_pred CcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcH
Q 004839 477 GISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSI 556 (728)
Q Consensus 477 G~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~ 556 (728)
...+++.+++|.. .+++|+||++||+.... ..|......|+++||+|+.+|++|.+.. .....+
T Consensus 36 ~~~~p~~v~~P~~---~g~~PvVv~lHG~~~~~--~~y~~l~~~Las~G~~VvapD~~g~~~~-----------~~~~~i 99 (313)
T PLN00021 36 SPPKPLLVATPSE---AGTYPVLLFLHGYLLYN--SFYSQLLQHIASHGFIVVAPQLYTLAGP-----------DGTDEI 99 (313)
T ss_pred CCCceEEEEeCCC---CCCCCEEEEECCCCCCc--ccHHHHHHHHHhCCCEEEEecCCCcCCC-----------CchhhH
Confidence 3568899999964 46789999999975532 4566777889999999999999874321 012356
Q ss_pred HHHHHHHHHHHHc--------CCCCCCcEEEEEeCccHHHHHHHHHhCCC-----ceeEEEEeCCcccchhhccCCCCCC
Q 004839 557 KDFISCARFLIEK--------EIVKEHKLAGWGYSAGGLLVAAAINCCPD-----LFRAVVLEVPFLDATNTLLYPILPL 623 (728)
Q Consensus 557 ~D~~~~~~~l~~~--------~~~d~~ri~i~G~S~GG~~~~~~~~~~p~-----~f~a~v~~~p~~d~~~~~~~~~~~~ 623 (728)
+|..++++|+.+. ..+|++|++++|||+||++++.++..+++ .|+++|+..|+...... ..
T Consensus 100 ~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~--~~---- 173 (313)
T PLN00021 100 KDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKG--KQ---- 173 (313)
T ss_pred HHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeeccccccccc--cC----
Confidence 6777777887652 23678999999999999999999988774 57888888886543210 00
Q ss_pred CcccccccCCCCCHHHHHHHHccCcccccccCCCCCeEEEEcCCCC-----CCC----HH-HHHHHHHHHHhCCCCCCCc
Q 004839 624 IAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNT-----RFG----VW-EAAKWVARVRESTIYDPKR 693 (728)
Q Consensus 624 ~~~~~~~~g~p~~~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~-----~Vp----~~-~~~~~~~~L~~~~~~~~~~ 693 (728)
..|. . ..+.|. .- ++..|.|+|.++.|. .+| .. +-.+|+++++...
T Consensus 174 --------~~p~---i----l~~~~~--s~-~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~~~~------ 229 (313)
T PLN00021 174 --------TPPP---V----LTYAPH--SF-NLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECKAPA------ 229 (313)
T ss_pred --------CCCc---c----cccCcc--cc-cCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcCCCe------
Confidence 0111 0 111111 11 267899999998763 222 33 3378888887533
Q ss_pred cEEEEcCCCCCC
Q 004839 694 PILLNLTTDIVE 705 (728)
Q Consensus 694 ~~~~~~~~gH~~ 705 (728)
..++.+++||..
T Consensus 230 ~~~~~~~~gH~~ 241 (313)
T PLN00021 230 VHFVAKDYGHMD 241 (313)
T ss_pred eeeeecCCCcce
Confidence 222257888863
No 67
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.45 E-value=1.1e-13 Score=137.71 Aligned_cols=186 Identities=17% Similarity=0.165 Sum_probs=112.8
Q ss_pred EEEEcCCCCCC-cCcccHHHHHHHHH-CCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHc---CCCC
Q 004839 499 LLHGHGAYGEL-LDKRWRSELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEK---EIVK 573 (728)
Q Consensus 499 vv~~hGg~~~~-~~~~~~~~~~~l~~-~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d 573 (728)
||++|||.... ...........|++ +|++|+.+|||-..+. ..+..++|+.++++|+.++ -..|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~~-----------~~p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPEA-----------PFPAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTTS-----------STTHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeeccccccc-----------cccccccccccceeeecccccccccc
Confidence 78999975432 22233445666775 8999999999966542 3346899999999999987 2468
Q ss_pred CCcEEEEEeCccHHHHHHHHHhCCC----ceeEEEEeCCcccchhh----c----cCCCCC-CCccccc----ccCCCCC
Q 004839 574 EHKLAGWGYSAGGLLVAAAINCCPD----LFRAVVLEVPFLDATNT----L----LYPILP-LIAADYE----EFGYPGD 636 (728)
Q Consensus 574 ~~ri~i~G~S~GG~~~~~~~~~~p~----~f~a~v~~~p~~d~~~~----~----~~~~~~-~~~~~~~----~~g~p~~ 636 (728)
+++|+++|.|+||.+++.++.+..+ .++++++.+|+.|+... + .....+ +...... .+- +..
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 148 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWFWKLYL-PGS 148 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHHHHHHH-STG
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhccccccccccccccccccccccccccccccc-ccc
Confidence 9999999999999999998864322 48999999999887110 0 000101 1100000 000 000
Q ss_pred HHHHHHHHccCcccccccCCCCC-eEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCC
Q 004839 637 IDDFHAIRNYSPYDNIQKDVLYP-AVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVE 705 (728)
Q Consensus 637 ~~~~~~~~~~sP~~~i~~~~~~P-~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~ 705 (728)
. ..-...||+.. ......| +++++|+.|. ...++.+|+++|++.|++ ..+.++++.+|++
T Consensus 149 --~-~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~--l~~~~~~~~~~L~~~gv~---v~~~~~~g~~H~f 209 (211)
T PF07859_consen 149 --D-RDDPLASPLNA-SDLKGLPPTLIIHGEDDV--LVDDSLRFAEKLKKAGVD---VELHVYPGMPHGF 209 (211)
T ss_dssp --G-TTSTTTSGGGS-SCCTTCHEEEEEEETTST--THHHHHHHHHHHHHTT-E---EEEEEETTEETTG
T ss_pred --c-ccccccccccc-cccccCCCeeeecccccc--chHHHHHHHHHHHHCCCC---EEEEEECCCeEEe
Confidence 0 00013466654 1212355 5555666664 357999999999999854 2333388999975
No 68
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.44 E-value=3.5e-12 Score=127.11 Aligned_cols=188 Identities=12% Similarity=0.040 Sum_probs=107.2
Q ss_pred CCccEEEEEcCCCCCCcCcccHHHHH-HHHHCCeEEEEEcCCC---CCCCCC---ccccccccCCCC-CcHHHHHH---H
Q 004839 494 NQNPGLLHGHGAYGELLDKRWRSELK-SLLDRGWVVAFADVRG---GGGGGK---KWHHDGRRTKKL-NSIKDFIS---C 562 (728)
Q Consensus 494 ~~~P~vv~~hGg~~~~~~~~~~~~~~-~l~~~Gy~v~~~d~RG---~g~~G~---~~~~~~~~~~~~-~~~~D~~~---~ 562 (728)
...|+||+.||- |... ..+..... .+......++.++-+- ....|. .|+......... ...+++.. .
T Consensus 12 ~~~~lvi~LHG~-G~~~-~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~~ 89 (216)
T PF02230_consen 12 KAKPLVILLHGY-GDSE-DLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAER 89 (216)
T ss_dssp T-SEEEEEE--T-TS-H-HHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHHH
T ss_pred CCceEEEEECCC-CCCc-chhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHHH
Confidence 457999999984 4332 22222222 2233578888876542 112333 787643322211 22333332 2
Q ss_pred ----HHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCCCCcccccccCCCCCHH
Q 004839 563 ----ARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDID 638 (728)
Q Consensus 563 ----~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~ 638 (728)
++.+++.+ ++++||+++|+|+||.|++.++.++|+.|+++|+.+|.+-.... + .
T Consensus 90 l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~---------------~--~---- 147 (216)
T PF02230_consen 90 LDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE---------------L--E---- 147 (216)
T ss_dssp HHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC---------------C--H----
T ss_pred HHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc---------------c--c----
Confidence 33333334 89999999999999999999999999999999999985432100 0 0
Q ss_pred HHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEE--EcCCCCCCCchhhhHHHHH
Q 004839 639 DFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEENRYLQCKESA 716 (728)
Q Consensus 639 ~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~ 716 (728)
.......++|++++||..|+.||...+++.++.|++.+. .+.+ |++.||.... +++.
T Consensus 148 -----------~~~~~~~~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~-----~v~~~~~~g~gH~i~~-----~~~~ 206 (216)
T PF02230_consen 148 -----------DRPEALAKTPILIIHGDEDPVVPFEWAEKTAEFLKAAGA-----NVEFHEYPGGGHEISP-----EELR 206 (216)
T ss_dssp -----------CCHCCCCTS-EEEEEETT-SSSTHHHHHHHHHHHHCTT------GEEEEEETT-SSS--H-----HHHH
T ss_pred -----------ccccccCCCcEEEEecCCCCcccHHHHHHHHHHHHhcCC-----CEEEEEcCCCCCCCCH-----HHHH
Confidence 001111267999999999999999999999999999883 4555 8889997532 3344
Q ss_pred HHHHHHHHhh
Q 004839 717 LETAFLIKMM 726 (728)
Q Consensus 717 ~~~afl~~~l 726 (728)
...+||.+++
T Consensus 207 ~~~~~l~~~~ 216 (216)
T PF02230_consen 207 DLREFLEKHI 216 (216)
T ss_dssp HHHHHHHHH-
T ss_pred HHHHHHhhhC
Confidence 5668888764
No 69
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.43 E-value=9.4e-11 Score=129.42 Aligned_cols=251 Identities=12% Similarity=0.089 Sum_probs=159.9
Q ss_pred CCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCcc-ceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCCceeE
Q 004839 132 SPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQA-VRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDAL 210 (728)
Q Consensus 132 SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~~l 210 (728)
...+.+++|.....++....|+++|.++++...++.. .....+.|||||+.|+|+.... ...+||++++.++....+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~--~~~~i~v~d~~~g~~~~~ 229 (417)
T TIGR02800 152 GAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFES--GKPEIYVQDLATGQREKV 229 (417)
T ss_pred CCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEe
Confidence 4567889998765545678899999987766665543 3467889999999999987543 235899999987753222
Q ss_pred EeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCC-ceEEEEeecCCEEEEEEcCCccCCC
Q 004839 211 LLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGFLYLFTDAAKEGQE 289 (728)
Q Consensus 211 v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~-~~~~~~~~dg~~l~~~tn~~~~~~~ 289 (728)
. .... ....+.|||||+.|++.....+..+||++|+.+ +..+.+..... .....+++||++|++.++..+
T Consensus 230 ~-~~~~--~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g---- 300 (417)
T TIGR02800 230 A-SFPG--MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG--KQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG---- 300 (417)
T ss_pred e-cCCC--CccceEECCCCCEEEEEECCCCCccEEEEECCC--CCEEECCCCCCCCCCEEECCCCCEEEEEECCCC----
Confidence 2 1111 123478999999999887766678999999987 44555544322 224466789999999887654
Q ss_pred CCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecCCCCCCcceeecccccccccC
Q 004839 290 ADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPL 369 (728)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 369 (728)
...|+.+++. ..+++.+........-..+...++.+++....++..+|+++++.++. . ..+..
T Consensus 301 --~~~iy~~d~~----~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~------~-----~~l~~ 363 (417)
T TIGR02800 301 --SPQIYMMDAD----GGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG------E-----RVLTD 363 (417)
T ss_pred --CceEEEEECC----CCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC------e-----EEccC
Confidence 2468888876 23445444332111111233345677777776777789999986532 0 11111
Q ss_pred CCceeeeecCCCccCCCcEEEEEEccCCCCceEEEEECCCCeEEEE
Q 004839 370 PKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNII 415 (728)
Q Consensus 370 p~~~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~~~~~l 415 (728)
+... ....+++++..+++....... ..++.++...+..+.+
T Consensus 364 ~~~~----~~p~~spdg~~l~~~~~~~~~-~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 364 TGLD----ESPSFAPNGRMILYATTRGGR-GVLGLVSTDGRFRARL 404 (417)
T ss_pred CCCC----CCceECCCCCEEEEEEeCCCc-EEEEEEECCCceeeEC
Confidence 1111 122456778888877765444 5777777655444433
No 70
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.43 E-value=1.7e-11 Score=127.12 Aligned_cols=192 Identities=18% Similarity=0.157 Sum_probs=118.4
Q ss_pred ccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004839 496 NPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 575 (728)
Q Consensus 496 ~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 575 (728)
.|+||++||..+.. ..|......|+ ++|.|+.+|+||+|.+.... ....+++++.+.+..++++- +.+
T Consensus 28 ~~~vv~~hG~~~~~--~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~l~~~i~~~--~~~ 95 (278)
T TIGR03056 28 GPLLLLLHGTGAST--HSWRDLMPPLA-RSFRVVAPDLPGHGFTRAPF-------RFRFTLPSMAEDLSALCAAE--GLS 95 (278)
T ss_pred CCeEEEEcCCCCCH--HHHHHHHHHHh-hCcEEEeecCCCCCCCCCcc-------ccCCCHHHHHHHHHHHHHHc--CCC
Confidence 47899999975533 44666666665 47999999999998653221 11346778777777777642 336
Q ss_pred cEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCC----------CCCCc----------cccc----cc
Q 004839 576 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPI----------LPLIA----------ADYE----EF 631 (728)
Q Consensus 576 ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~----------~~~~~----------~~~~----~~ 631 (728)
++.++|+|+||.+++.++.++|++++++|+.++..+......... .+... .... ..
T Consensus 96 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (278)
T TIGR03056 96 PDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGAADQQRVERLIRDT 175 (278)
T ss_pred CceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhcccCcchhHHhhcc
Confidence 789999999999999999999999998988877543211000000 00000 0000 00
Q ss_pred CCCCCHHHH-----------------HHHHccC--cc-cccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCC
Q 004839 632 GYPGDIDDF-----------------HAIRNYS--PY-DNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDP 691 (728)
Q Consensus 632 g~p~~~~~~-----------------~~~~~~s--P~-~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~ 691 (728)
+...+.... +.+..++ +. ..+.+ +++|+|+|+|..|..||..+++++.+.+...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~P~lii~g~~D~~vp~~~~~~~~~~~~~~----- 249 (278)
T TIGR03056 176 GSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPR-ITIPLHLIAGEEDKAVPPDESKRAATRVPTA----- 249 (278)
T ss_pred ccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhccc-CCCCEEEEEeCCCcccCHHHHHHHHHhccCC-----
Confidence 000000000 1111111 11 12344 7899999999999999999888887766432
Q ss_pred CccEEEEcCCCCCCCc
Q 004839 692 KRPILLNLTTDIVEEN 707 (728)
Q Consensus 692 ~~~~~~~~~~gH~~~~ 707 (728)
.+..++++||....
T Consensus 250 --~~~~~~~~gH~~~~ 263 (278)
T TIGR03056 250 --TLHVVPGGGHLVHE 263 (278)
T ss_pred --eEEEECCCCCcccc
Confidence 23337899998654
No 71
>PRK11071 esterase YqiA; Provisional
Probab=99.42 E-value=5.8e-12 Score=122.38 Aligned_cols=183 Identities=14% Similarity=0.017 Sum_probs=114.3
Q ss_pred cEEEEEcCCCCCCcCcccHH--HHHHHHH--CCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCC
Q 004839 497 PGLLHGHGAYGELLDKRWRS--ELKSLLD--RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIV 572 (728)
Q Consensus 497 P~vv~~hGg~~~~~~~~~~~--~~~~l~~--~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 572 (728)
|.||++||..++. ..|.. ....|.+ .+|.|+.+|.||++ ++..+.++.++++.
T Consensus 2 p~illlHGf~ss~--~~~~~~~~~~~l~~~~~~~~v~~~dl~g~~-------------------~~~~~~l~~l~~~~-- 58 (190)
T PRK11071 2 STLLYLHGFNSSP--RSAKATLLKNWLAQHHPDIEMIVPQLPPYP-------------------ADAAELLESLVLEH-- 58 (190)
T ss_pred CeEEEECCCCCCc--chHHHHHHHHHHHHhCCCCeEEeCCCCCCH-------------------HHHHHHHHHHHHHc--
Confidence 6799999965543 23432 2345544 38999999999763 24555666666543
Q ss_pred CCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCCCCcccccccCCCCCHHHHHHHHccCccccc
Q 004839 573 KEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNI 652 (728)
Q Consensus 573 d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sP~~~i 652 (728)
+.+++.++|+|+||++++.++.++|. + +|+.+|..+....... ........+..-..+...+..+.+.++.+.. +
T Consensus 59 ~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-i 133 (190)
T PRK11071 59 GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTD-YLGENENPYTGQQYVLESRHIYDLKVMQIDP-L 133 (190)
T ss_pred CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHH-hcCCcccccCCCcEEEcHHHHHHHHhcCCcc-C
Confidence 23589999999999999999999884 3 4677777764322110 0000000111001122234455555555444 3
Q ss_pred ccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCchhhhHHHHHHHHHHH
Q 004839 653 QKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFL 722 (728)
Q Consensus 653 ~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~afl 722 (728)
. ...|++++||..|+.||+.++.+++++.+ .+ +.++++|.+...+.. ...+.+||
T Consensus 134 ~--~~~~v~iihg~~De~V~~~~a~~~~~~~~---------~~-~~~ggdH~f~~~~~~---~~~i~~fl 188 (190)
T PRK11071 134 E--SPDLIWLLQQTGDEVLDYRQAVAYYAACR---------QT-VEEGGNHAFVGFERY---FNQIVDFL 188 (190)
T ss_pred C--ChhhEEEEEeCCCCcCCHHHHHHHHHhcc---------eE-EECCCCcchhhHHHh---HHHHHHHh
Confidence 3 46678899999999999999999999531 22 368999998655333 33345665
No 72
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.42 E-value=1.2e-11 Score=133.75 Aligned_cols=163 Identities=14% Similarity=0.129 Sum_probs=119.2
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 203 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~ 203 (728)
....++|||||++|||+..++| ..+||++|+.++....++. .+......|||||++|+|++ +...++ +||++++.
T Consensus 239 ~~~~P~fspDG~~l~f~~~rdg--~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p-~I~~~~~~ 314 (425)
T COG0823 239 NNGAPAFSPDGSKLAFSSSRDG--SPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTS-DRGGRP-QIYLYDLE 314 (425)
T ss_pred ccCCccCCCCCCEEEEEECCCC--CccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEe-CCCCCc-ceEEECCC
Confidence 3456889999999999988776 4889999999998777665 44556899999999999994 444455 89999998
Q ss_pred CCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCceEEEEeecCCEEEEEEcC
Q 004839 204 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDA 283 (728)
Q Consensus 204 t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~tn~ 283 (728)
..+...+.+...... .+.|||||++|++.....+...+...|+.++.. .+.++.........+.++|+.+.+.++.
T Consensus 315 g~~~~riT~~~~~~~---~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 315 GSQVTRLTFSGGGNS---NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCceeEeeccCCCCc---CccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEeccC
Confidence 876555554433322 578999999999999654446788888876322 6666666555556677888888887765
Q ss_pred CccCCCCCceEEEEeeCC
Q 004839 284 AKEGQEADNHYLLRCPVD 301 (728)
Q Consensus 284 ~~~~~~~~~~~l~~~~~~ 301 (728)
.+ ...|..+...
T Consensus 391 ~~------~~~l~~~s~~ 402 (425)
T COG0823 391 GG------GSVLSLVSLD 402 (425)
T ss_pred CC------CceEEEeecc
Confidence 53 2445555443
No 73
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.42 E-value=8.3e-12 Score=130.90 Aligned_cols=109 Identities=21% Similarity=0.199 Sum_probs=80.4
Q ss_pred ccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004839 496 NPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 575 (728)
Q Consensus 496 ~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 575 (728)
.|.||++||..++. ..|......|+++ |.|+++|.||+|.+...=.... ......+++|+.+.+..++++-.. +
T Consensus 29 ~~~vlllHG~~~~~--~~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~-~~~~~~~~~~~a~~l~~~l~~l~~--~ 102 (294)
T PLN02824 29 GPALVLVHGFGGNA--DHWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSA-PPNSFYTFETWGEQLNDFCSDVVG--D 102 (294)
T ss_pred CCeEEEECCCCCCh--hHHHHHHHHHHhC-CeEEEEcCCCCCCCCCCccccc-cccccCCHHHHHHHHHHHHHHhcC--C
Confidence 37899999976644 4677778888776 5999999999997632100000 001234677777777776654322 6
Q ss_pred cEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 004839 576 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 610 (728)
Q Consensus 576 ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~ 610 (728)
++.++|||+||.+++.++.++|++++++|+.+|..
T Consensus 103 ~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~ 137 (294)
T PLN02824 103 PAFVICNSVGGVVGLQAAVDAPELVRGVMLINISL 137 (294)
T ss_pred CeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCc
Confidence 89999999999999999999999999999988754
No 74
>PLN02965 Probable pheophorbidase
Probab=99.41 E-value=2.2e-11 Score=124.79 Aligned_cols=101 Identities=20% Similarity=0.191 Sum_probs=77.9
Q ss_pred EEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCC-Cc
Q 004839 498 GLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE-HK 576 (728)
Q Consensus 498 ~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~-~r 576 (728)
+||++||...+. ..|...+..|+++||.|+.+|+||+|.+... .....+++++.+.+..+++. .+. ++
T Consensus 5 ~vvllHG~~~~~--~~w~~~~~~L~~~~~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~--l~~~~~ 73 (255)
T PLN02965 5 HFVFVHGASHGA--WCWYKLATLLDAAGFKSTCVDLTGAGISLTD-------SNTVSSSDQYNRPLFALLSD--LPPDHK 73 (255)
T ss_pred EEEEECCCCCCc--CcHHHHHHHHhhCCceEEEecCCcCCCCCCC-------ccccCCHHHHHHHHHHHHHh--cCCCCC
Confidence 589999976543 4577778888899999999999999975321 11124577777766666654 222 58
Q ss_pred EEEEEeCccHHHHHHHHHhCCCceeEEEEeCCc
Q 004839 577 LAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 609 (728)
Q Consensus 577 i~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~ 609 (728)
+.++||||||.+++.++.++|++++++|+.++.
T Consensus 74 ~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~ 106 (255)
T PLN02965 74 VILVGHSIGGGSVTEALCKFTDKISMAIYVAAA 106 (255)
T ss_pred EEEEecCcchHHHHHHHHhCchheeEEEEEccc
Confidence 999999999999999999999999999987764
No 75
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.40 E-value=6.9e-12 Score=115.39 Aligned_cols=197 Identities=15% Similarity=0.225 Sum_probs=128.2
Q ss_pred EEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcC--CCCCCcCcc-cHHHHHHHHHCCeEEEEEcCCCCCCCCCccc
Q 004839 468 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHG--AYGELLDKR-WRSELKSLLDRGWVVAFADVRGGGGGGKKWH 544 (728)
Q Consensus 468 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hG--g~~~~~~~~-~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~ 544 (728)
..+.+...-|. +.+.. -|.+ ....|+.|.+|- -++.++... -......|.++||+++.+|+||-|.+
T Consensus 5 ~~v~i~Gp~G~-le~~~-~~~~---~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S----- 74 (210)
T COG2945 5 PTVIINGPAGR-LEGRY-EPAK---TPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRS----- 74 (210)
T ss_pred CcEEecCCccc-ceecc-CCCC---CCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccc-----
Confidence 34556666663 45433 3333 133566666554 333333222 23345788899999999999999987
Q ss_pred cccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCCCC
Q 004839 545 HDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLI 624 (728)
Q Consensus 545 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~ 624 (728)
+|..+.|..+.+|..++++|+.++.-- ..-..+.|.|.|+++++.++.+.|+. ...|+..|..+..
T Consensus 75 -~G~fD~GiGE~~Da~aaldW~~~~hp~-s~~~~l~GfSFGa~Ia~~la~r~~e~-~~~is~~p~~~~~----------- 140 (210)
T COG2945 75 -QGEFDNGIGELEDAAAALDWLQARHPD-SASCWLAGFSFGAYIAMQLAMRRPEI-LVFISILPPINAY----------- 140 (210)
T ss_pred -cCcccCCcchHHHHHHHHHHHHhhCCC-chhhhhcccchHHHHHHHHHHhcccc-cceeeccCCCCch-----------
Confidence 566667888999999999999987532 22247899999999999999988764 3445555543310
Q ss_pred cccccccCCCCCHHHHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCC
Q 004839 625 AADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIV 704 (728)
Q Consensus 625 ~~~~~~~g~p~~~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~ 704 (728)
++ | .+.. ...|.++|+|..|+.|.+....++++- +. .+++..++++|+
T Consensus 141 --------------df------s---~l~P-~P~~~lvi~g~~Ddvv~l~~~l~~~~~-~~-------~~~i~i~~a~HF 188 (210)
T COG2945 141 --------------DF------S---FLAP-CPSPGLVIQGDADDVVDLVAVLKWQES-IK-------ITVITIPGADHF 188 (210)
T ss_pred --------------hh------h---hccC-CCCCceeEecChhhhhcHHHHHHhhcC-CC-------CceEEecCCCce
Confidence 00 0 0111 456789999999999988888777665 21 223337899999
Q ss_pred CCchhhhHHHHHHHHHHH
Q 004839 705 EENRYLQCKESALETAFL 722 (728)
Q Consensus 705 ~~~~~~~~~~~~~~~afl 722 (728)
+..+-..+. ....+||
T Consensus 189 F~gKl~~l~--~~i~~~l 204 (210)
T COG2945 189 FHGKLIELR--DTIADFL 204 (210)
T ss_pred ecccHHHHH--HHHHHHh
Confidence 876433332 2245666
No 76
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.40 E-value=4e-11 Score=129.69 Aligned_cols=207 Identities=14% Similarity=0.051 Sum_probs=140.4
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 203 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~ 203 (728)
.+..+.|||||+.++|..-..+. ..+++++|+++|+...+.. ......+.|||||++|+|+.... ...+||.+|+.
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~-~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rd--g~~~iy~~dl~ 270 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGG-CPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRD--GSPDIYLMDLD 270 (425)
T ss_pred ceeccccCcCCCceEEEEEecCC-CceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCC--CCccEEEEcCC
Confidence 34567799999999998654332 3789999999998665544 55677899999999999997543 45689999998
Q ss_pred CCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCc-eEEEEeecCCEEEEEEc
Q 004839 204 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL-AHCIVEHHEGFLYLFTD 282 (728)
Q Consensus 204 t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~-~~~~~~~dg~~l~~~tn 282 (728)
+.+...+.- ... ....+.|||||++|+|.+++.+..+||++++++ ...++++..... ....+++||+++.|.+-
T Consensus 271 ~~~~~~Lt~--~~g-i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g--~~~~riT~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 271 GKNLPRLTN--GFG-INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG--SQVTRLTFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred CCcceeccc--CCc-cccCccCCCCCCEEEEEeCCCCCcceEEECCCC--CceeEeeccCCCCcCccCCCCCCEEEEEec
Confidence 876333321 111 123688999999999999999999999999988 455677655443 35577899999999873
Q ss_pred CCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecC
Q 004839 283 AAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLP 349 (728)
Q Consensus 283 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~ 349 (728)
..+ ...++..++. . ...|+.+... ....-..+...+..+++.....+.+.+..+.++
T Consensus 346 ~~g------~~~i~~~~~~-~--~~~~~~lt~~-~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~ 402 (425)
T COG0823 346 SGG------QWDIDKNDLA-S--GGKIRILTST-YLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLD 402 (425)
T ss_pred cCC------ceeeEEeccC-C--CCcEEEcccc-ccCCCCCcCCCCceEEEeccCCCCceEEEeecc
Confidence 322 2557776664 2 1225543221 111112233334556655555666777777654
No 77
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.6e-10 Score=127.65 Aligned_cols=242 Identities=10% Similarity=0.054 Sum_probs=150.2
Q ss_pred CCEEEEEEEcCC-CcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCCceeEEe
Q 004839 135 HKFLAYTMYDKD-NDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLL 212 (728)
Q Consensus 135 G~~lA~~~~~~g-~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~~lv~ 212 (728)
+++|||+....+ ...++|+++|.+++....++. ...+..+.|||||+.|+|+..+. ...+||+.++.+++...+.
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~--~~~~i~i~dl~tg~~~~l~- 244 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFEN--KKSQLVVHDLRSGARKVVA- 244 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecC--CCcEEEEEeCCCCceEEEe-
Confidence 588999876543 346899999998877655554 34578899999999999987643 2457999999876533322
Q ss_pred eecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCC-ceEEEEeecCCEEEEEEcCCccCCCCC
Q 004839 213 EESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGFLYLFTDAAKEGQEAD 291 (728)
Q Consensus 213 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~-~~~~~~~~dg~~l~~~tn~~~~~~~~~ 291 (728)
.... ....+.|||||++|++.....+..+||++|+++ +..+.++.... .....+++||+.|++.++..+
T Consensus 245 ~~~g--~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~--~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g------ 314 (429)
T PRK01742 245 SFRG--HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANG--GTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSG------ 314 (429)
T ss_pred cCCC--ccCceeECCCCCEEEEEEecCCcEEEEEEECCC--CCeEeeccCCCCcCCEEECCCCCEEEEEECCCC------
Confidence 1111 123578999999999987666667899999977 45666665432 235677899999999887654
Q ss_pred ceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecCCCCCCcceeecccccccccCCC
Q 004839 292 NHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPK 371 (728)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~ 371 (728)
+.+|+.++.. . ....++... ... ..+...++.|++... ..+.++|+.+++- ..+ .-+.
T Consensus 315 ~~~I~~~~~~-~----~~~~~l~~~-~~~-~~~SpDG~~ia~~~~----~~i~~~Dl~~g~~---~~l--------t~~~ 372 (429)
T PRK01742 315 SPQVYRMSAS-G----GGASLVGGR-GYS-AQISADGKTLVMING----DNVVKQDLTSGST---EVL--------SSTF 372 (429)
T ss_pred CceEEEEECC-C----CCeEEecCC-CCC-ccCCCCCCEEEEEcC----CCEEEEECCCCCe---EEe--------cCCC
Confidence 3578888765 1 122333221 111 123444566666543 3466788765420 011 1000
Q ss_pred ceeeeecCCCccCCCcEEEEEEccCCCCceEEEEECCCCeEEEEE
Q 004839 372 YVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQ 416 (728)
Q Consensus 372 ~~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~~~~~l~ 416 (728)
.. ....+++++..+++..+ ...-..++.++...+..+.|.
T Consensus 373 ~~----~~~~~sPdG~~i~~~s~-~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 373 LD----ESPSISPNGIMIIYSST-QGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CC----CCceECCCCCEEEEEEc-CCCceEEEEEECCCCceEEcc
Confidence 00 12345677777776543 333345566666555455554
No 78
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.39 E-value=1.8e-11 Score=127.13 Aligned_cols=221 Identities=16% Similarity=0.156 Sum_probs=130.5
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCC
Q 004839 475 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLN 554 (728)
Q Consensus 475 ~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~ 554 (728)
-+|.++.+... . + . .+ .|.||++||..+.. ..|......|. .+|.|+++|+||+|.+... ....
T Consensus 9 ~~~~~~~~~~~-~-~-~-~~-~~plvllHG~~~~~--~~w~~~~~~L~-~~~~vi~~Dl~G~G~S~~~--------~~~~ 72 (276)
T TIGR02240 9 LDGQSIRTAVR-P-G-K-EG-LTPLLIFNGIGANL--ELVFPFIEALD-PDLEVIAFDVPGVGGSSTP--------RHPY 72 (276)
T ss_pred cCCcEEEEEEe-c-C-C-CC-CCcEEEEeCCCcch--HHHHHHHHHhc-cCceEEEECCCCCCCCCCC--------CCcC
Confidence 47777776442 1 1 1 12 25689999864433 34666666664 4799999999999976321 1123
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchh------h---ccCCC--C-C
Q 004839 555 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATN------T---LLYPI--L-P 622 (728)
Q Consensus 555 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~------~---~~~~~--~-~ 622 (728)
+++++.+.+..+++.- +.+++.++|+|+||++++.++.++|++++++|+.++...... . +.... . +
T Consensus 73 ~~~~~~~~~~~~i~~l--~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (276)
T TIGR02240 73 RFPGLAKLAARMLDYL--DYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRRYIQP 150 (276)
T ss_pred cHHHHHHHHHHHHHHh--CcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchhhhcc
Confidence 5666666666666542 446899999999999999999999999999999987653210 0 00000 0 0
Q ss_pred CC-----cccccc-c-CCCCCH--------------HHHHHHH--ccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHH
Q 004839 623 LI-----AADYEE-F-GYPGDI--------------DDFHAIR--NYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKW 679 (728)
Q Consensus 623 ~~-----~~~~~~-~-g~p~~~--------------~~~~~~~--~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~ 679 (728)
.. ...+.. + -++... .....+. .......+.+ +++|+|+|+|..|..||+.++.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~lii~G~~D~~v~~~~~~~l 229 (276)
T TIGR02240 151 SHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHK-IQQPTLVLAGDDDPIIPLINMRLL 229 (276)
T ss_pred ccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhc-CCCCEEEEEeCCCCcCCHHHHHHH
Confidence 00 000000 0 000000 0000000 1111233444 899999999999999999999999
Q ss_pred HHHHHhCCCCCCCccEEEEcCCCCCCCc-hhhhHHHHHHHHHHHHH
Q 004839 680 VARVRESTIYDPKRPILLNLTTDIVEEN-RYLQCKESALETAFLIK 724 (728)
Q Consensus 680 ~~~L~~~~~~~~~~~~~~~~~~gH~~~~-~~~~~~~~~~~~afl~~ 724 (728)
.+.+... .+.+.+ +||.... ..+.+ .....+||.+
T Consensus 230 ~~~~~~~-------~~~~i~-~gH~~~~e~p~~~--~~~i~~fl~~ 265 (276)
T TIGR02240 230 AWRIPNA-------ELHIID-DGHLFLITRAEAV--APIIMKFLAE 265 (276)
T ss_pred HHhCCCC-------EEEEEc-CCCchhhccHHHH--HHHHHHHHHH
Confidence 8877542 222334 5997543 33333 3335577765
No 79
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.39 E-value=4e-12 Score=128.86 Aligned_cols=192 Identities=19% Similarity=0.144 Sum_probs=116.7
Q ss_pred CccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCC
Q 004839 495 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 574 (728)
Q Consensus 495 ~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 574 (728)
..|+||++||..... ..|....+.| ++||.|+.+|+||+|..... ....+++++.+.+..+++.- +.
T Consensus 12 ~~~~li~~hg~~~~~--~~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~--------~~~~~~~~~~~~~~~~i~~~--~~ 78 (251)
T TIGR02427 12 GAPVLVFINSLGTDL--RMWDPVLPAL-TPDFRVLRYDKRGHGLSDAP--------EGPYSIEDLADDVLALLDHL--GI 78 (251)
T ss_pred CCCeEEEEcCcccch--hhHHHHHHHh-hcccEEEEecCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHHh--CC
Confidence 458999999853332 3455555555 57999999999999875321 12246777777777766542 44
Q ss_pred CcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhh--c-------cCCCCC-CC----cccc-cccCCCCCH--
Q 004839 575 HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNT--L-------LYPILP-LI----AADY-EEFGYPGDI-- 637 (728)
Q Consensus 575 ~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~--~-------~~~~~~-~~----~~~~-~~~g~p~~~-- 637 (728)
+++.++|+|+||++++.++.++|++++++|+.++...+... + ...... .. ..++ ..+..+...
T Consensus 79 ~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
T TIGR02427 79 ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREAHPARL 158 (251)
T ss_pred CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccCChHHH
Confidence 68999999999999999999999999998887764322110 0 000000 00 0000 001101000
Q ss_pred HHH----------------HHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCC
Q 004839 638 DDF----------------HAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTT 701 (728)
Q Consensus 638 ~~~----------------~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 701 (728)
+.+ ..+...+....+.+ ++.|+++++|..|..+|.....++.+.+... .+...+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Pvlii~g~~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 230 (251)
T TIGR02427 159 DLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGA-IAVPTLCIAGDQDGSTPPELVREIADLVPGA-------RFAEIRGA 230 (251)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhh-cCCCeEEEEeccCCcCChHHHHHHHHhCCCc-------eEEEECCC
Confidence 000 01111112233444 7899999999999999998888887776431 22336889
Q ss_pred CCCCCc
Q 004839 702 DIVEEN 707 (728)
Q Consensus 702 gH~~~~ 707 (728)
||....
T Consensus 231 gH~~~~ 236 (251)
T TIGR02427 231 GHIPCV 236 (251)
T ss_pred CCcccc
Confidence 997543
No 80
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.38 E-value=3.2e-11 Score=125.12 Aligned_cols=108 Identities=20% Similarity=0.139 Sum_probs=76.7
Q ss_pred ccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004839 496 NPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 575 (728)
Q Consensus 496 ~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 575 (728)
.|.||++||++++.. ..|......+.+.||.|+.+|.||+|...... ......+++++.+.+..++++- +.+
T Consensus 25 ~~~vl~~hG~~g~~~-~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~ 96 (288)
T TIGR01250 25 KIKLLLLHGGPGMSH-EYLENLRELLKEEGREVIMYDQLGCGYSDQPD-----DSDELWTIDYFVDELEEVREKL--GLD 96 (288)
T ss_pred CCeEEEEcCCCCccH-HHHHHHHHHHHhcCCEEEEEcCCCCCCCCCCC-----cccccccHHHHHHHHHHHHHHc--CCC
Confidence 477899999877542 22233334444459999999999998642110 0001245777777777776543 345
Q ss_pred cEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 004839 576 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD 611 (728)
Q Consensus 576 ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d 611 (728)
++.++|+|+||.+++.++.++|++++++|+.+++..
T Consensus 97 ~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 132 (288)
T TIGR01250 97 KFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDS 132 (288)
T ss_pred cEEEEEeehHHHHHHHHHHhCccccceeeEeccccc
Confidence 799999999999999999999999999998877543
No 81
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.38 E-value=5.7e-11 Score=124.63 Aligned_cols=113 Identities=16% Similarity=0.105 Sum_probs=84.0
Q ss_pred CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCc
Q 004839 476 DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNS 555 (728)
Q Consensus 476 dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~ 555 (728)
+|.++.+... +..|.||++||.+++. ..|......|++++ .|+++|.||+|.+...- ...+
T Consensus 15 ~g~~i~y~~~--------G~g~~vvllHG~~~~~--~~w~~~~~~L~~~~-~via~D~~G~G~S~~~~--------~~~~ 75 (295)
T PRK03592 15 LGSRMAYIET--------GEGDPIVFLHGNPTSS--YLWRNIIPHLAGLG-RCLAPDLIGMGASDKPD--------IDYT 75 (295)
T ss_pred CCEEEEEEEe--------CCCCEEEEECCCCCCH--HHHHHHHHHHhhCC-EEEEEcCCCCCCCCCCC--------CCCC
Confidence 7777664321 2347899999987644 45667778888886 99999999999763321 1135
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCc
Q 004839 556 IKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 609 (728)
Q Consensus 556 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~ 609 (728)
+++..+.+..++++- +.+++.++|+|+||.+++.++.++|++++++|+.+++
T Consensus 76 ~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~ 127 (295)
T PRK03592 76 FADHARYLDAWFDAL--GLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAI 127 (295)
T ss_pred HHHHHHHHHHHHHHh--CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCC
Confidence 666666666666542 3368999999999999999999999999999998874
No 82
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.38 E-value=2.1e-11 Score=128.52 Aligned_cols=123 Identities=20% Similarity=0.160 Sum_probs=84.4
Q ss_pred EEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccC
Q 004839 471 DVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT 550 (728)
Q Consensus 471 ~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~ 550 (728)
++...||.++.+... + .+ +.+.||++||+++.... ......+...+|.|+.+|+||+|.+... ..
T Consensus 8 ~~~~~~~~~l~y~~~---g-~~--~~~~lvllHG~~~~~~~---~~~~~~~~~~~~~vi~~D~~G~G~S~~~------~~ 72 (306)
T TIGR01249 8 YLNVSDNHQLYYEQS---G-NP--DGKPVVFLHGGPGSGTD---PGCRRFFDPETYRIVLFDQRGCGKSTPH------AC 72 (306)
T ss_pred eEEcCCCcEEEEEEC---c-CC--CCCEEEEECCCCCCCCC---HHHHhccCccCCEEEEECCCCCCCCCCC------CC
Confidence 455667887765331 1 11 13568999998765421 2223345557999999999999865321 11
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 004839 551 KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 610 (728)
Q Consensus 551 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~ 610 (728)
.......|+.+.+..++++- +.+++.++|+||||++++.++.++|++++++|+..++.
T Consensus 73 ~~~~~~~~~~~dl~~l~~~l--~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~ 130 (306)
T TIGR01249 73 LEENTTWDLVADIEKLREKL--GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFL 130 (306)
T ss_pred cccCCHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeecccc
Confidence 11235677777777777553 34679999999999999999999999999988877643
No 83
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.37 E-value=3.1e-11 Score=119.01 Aligned_cols=224 Identities=17% Similarity=0.188 Sum_probs=145.8
Q ss_pred CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHH-CCeEEEEEcCCCCCCCCCccccccccC----
Q 004839 476 DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRT---- 550 (728)
Q Consensus 476 dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~-~Gy~v~~~d~RG~g~~G~~~~~~~~~~---- 550 (728)
.|...+++|+.|++.+ .+.|+||++||+.++........-...|++ .||.|++|| ++.+.|...+...
T Consensus 43 ~g~~r~y~l~vP~g~~--~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPd-----g~~~~wn~~~~~~~~~p 115 (312)
T COG3509 43 NGLKRSYRLYVPPGLP--SGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPD-----GYDRAWNANGCGNWFGP 115 (312)
T ss_pred CCCccceEEEcCCCCC--CCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcC-----ccccccCCCcccccCCc
Confidence 5777889999999864 334999999998665432222223466666 699999993 4555564433333
Q ss_pred ----CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcc-cchhhccCCCCCCCc
Q 004839 551 ----KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL-DATNTLLYPILPLIA 625 (728)
Q Consensus 551 ----~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~-d~~~~~~~~~~~~~~ 625 (728)
.+..++..+.+.+..|+.+.-+||.||.|.|.|.||.|+.+++..+|++|.|+..+++.. +-... .+.-|..
T Consensus 116 ~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~a~--~~~rp~~- 192 (312)
T COG3509 116 ADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGVAC--TPPRPVS- 192 (312)
T ss_pred ccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCccc--CCCCchh-
Confidence 345567788889999999999999999999999999999999999999999999888865 21110 1111111
Q ss_pred ccccccCCCCCHHHHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCC----------------
Q 004839 626 ADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIY---------------- 689 (728)
Q Consensus 626 ~~~~~~g~p~~~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~---------------- 689 (728)
....-|.+.. .+|++-= ..| |-++..|..|+..+..+.++++...+.+
T Consensus 193 -~m~~~G~~Dp---------~~p~~gG----~~~--~g~g~~~~~v~~~~~~~~Waa~ng~~~~p~~~~~~~~~~~~~~~ 256 (312)
T COG3509 193 -VMAFHGTADP---------LNPYHGG----GVP--IGRGQRDGVVSAADLAARWAAVNGCQAGPDTAELPDVGDGTDYD 256 (312)
T ss_pred -HHHhcCCCCC---------CCCCCCC----Ccc--cccccccccccHHHHHHHHHHhcCCCCCCcccccCCCcccceee
Confidence 1111133221 2444421 223 7788888777888888888888654321
Q ss_pred --CCCccEEE--EcCCCCCCCc-hhh----------hHHHHHHHHHHHHHh
Q 004839 690 --DPKRPILL--NLTTDIVEEN-RYL----------QCKESALETAFLIKM 725 (728)
Q Consensus 690 --~~~~~~~~--~~~~gH~~~~-~~~----------~~~~~~~~~afl~~~ 725 (728)
.+..+|++ ..+.||.... ... .++....+.+|+..+
T Consensus 257 ~~~~~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~ 307 (312)
T COG3509 257 TCDGNARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQH 307 (312)
T ss_pred ccCCCcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhc
Confidence 01234544 6789998653 111 233445567888765
No 84
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.37 E-value=2e-10 Score=123.42 Aligned_cols=242 Identities=14% Similarity=0.113 Sum_probs=148.8
Q ss_pred eeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCccc-------------------eeeeEEEecCCCEEEEE
Q 004839 126 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAV-------------------RVSNIAWAKDGQALIYV 186 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~-------------------~~~~~~WspDg~~l~y~ 186 (728)
+..+.|||||++|||..+ + +||+.++.+++.+++|..+ ....+.|||||++|+|.
T Consensus 45 ~~~~~~sP~g~~~~~v~~--~----nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 45 LQDAKWSPDGKYIAFVRD--N----NLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp BSEEEE-SSSTEEEEEET--T----EEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred cccceeecCCCeeEEEec--C----ceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence 567789999999999963 2 4999999999877766421 33568899999999999
Q ss_pred EecCCCC-------------------------------cceeEEEECCCCCceeEEee---ecCcceEEEEEEcCCCCEE
Q 004839 187 VTDQNKR-------------------------------PYQIYCSIIGSTDEDALLLE---ESNENVYVNIRHTKDFHFV 232 (728)
Q Consensus 187 ~~~~~~~-------------------------------~~~v~~~~l~t~~~~~lv~~---~~~~~~~~~~~~SpDg~~l 232 (728)
+.|+..- ..+|+.+++.+++...+-.. .....+...+.|++|++.|
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l 198 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRL 198 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEE
Confidence 9876420 02466777766653222211 2334556789999999955
Q ss_pred EEEE-cCC-CceEEEEEeCCCCCCCeEEeeecC--Cce----EEEEe-ecCCEEEEEEcCCccCCCCCceEEEEeeCCCC
Q 004839 233 CVHT-FST-TSSKVFLINAADPFSGLTLIWECE--GLA----HCIVE-HHEGFLYLFTDAAKEGQEADNHYLLRCPVDAS 303 (728)
Q Consensus 233 ~~~~-~~~-~~~~l~~~dl~~~~~~~~~l~~~~--~~~----~~~~~-~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~~~ 303 (728)
++.. ++. ....+.++|++++ ..+.+.... ..+ ...+. ++++.+++++.+++ -.+|+.++.+ .
T Consensus 199 ~~~~~nR~q~~~~l~~~d~~tg--~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G------~~hly~~~~~-~ 269 (353)
T PF00930_consen 199 WVQWLNRDQNRLDLVLCDASTG--ETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDG------YRHLYLYDLD-G 269 (353)
T ss_dssp EEEEEETTSTEEEEEEEEECTT--TCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTS------SEEEEEEETT-S
T ss_pred EEEEcccCCCEEEEEEEECCCC--ceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCC------CcEEEEEccc-c
Confidence 5554 333 3477889999874 333333221 111 12222 67888888888654 2678988876 2
Q ss_pred CCCCCCeEEeecCCCc-eEEEEEeeCCEEEEEEecC--CeeEEEEEecC-CCCCCcceeecccccccccCCCce-eeeec
Q 004839 304 FPSRTWESVFIDDQGL-VVEDVDFCKTHMALILREG--RTYRLCSVSLP-LPAGKGVVHLKELHPHFLPLPKYV-SQIVP 378 (728)
Q Consensus 304 ~~~~~~~~li~~~~~~-~i~~~~~~~~~lv~~~~~~--g~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~p~~~-~~i~~ 378 (728)
+..+.|..+..++ .+..++..++.||+....+ +..+|++++++ .++ + ..+.-.... .++
T Consensus 270 ---~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~------~-----~~LT~~~~~~~~~-- 333 (353)
T PF00930_consen 270 ---GKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE------P-----KCLTCEDGDHYSA-- 333 (353)
T ss_dssp ---SEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE------E-----EESSTTSSTTEEE--
T ss_pred ---cceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC------e-----EeccCCCCCceEE--
Confidence 2233444343333 3455566678999988773 35789999987 432 1 112211111 122
Q ss_pred CCCccCCCcEEEEEEccCCCCc
Q 004839 379 GPNYDYYSSTMRFAISSPVMPD 400 (728)
Q Consensus 379 ~~~~~~~~~~~~~~~ss~~~p~ 400 (728)
.++++++.++.+++++..|+
T Consensus 334 --~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 334 --SFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp --EE-TTSSEEEEEEESSSSCE
T ss_pred --EECCCCCEEEEEEcCCCCCC
Confidence 24678899999999999985
No 85
>PLN02872 triacylglycerol lipase
Probab=99.36 E-value=1.4e-11 Score=132.53 Aligned_cols=145 Identities=21% Similarity=0.241 Sum_probs=97.1
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCC-CCCCCccEEEEEcCCCCCCcCccc----HHHHHHHHHCCeEEEEEcCCCC
Q 004839 462 SEFYSCEQYDVPSHDGISVPLTIIYSPKY-KKENQNPGLLHGHGAYGELLDKRW----RSELKSLLDRGWVVAFADVRGG 536 (728)
Q Consensus 462 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~-~~~~~~P~vv~~hGg~~~~~~~~~----~~~~~~l~~~Gy~v~~~d~RG~ 536 (728)
...|.+|+..+++.||..+...-+.+... ....+.|+|+++||...+...... ......|+++||.|.++|.||+
T Consensus 39 ~~gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~ 118 (395)
T PLN02872 39 PAGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGT 118 (395)
T ss_pred HcCCCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCccccccccc
Confidence 45789999999999999887755533221 112235789999997554322211 2244568899999999999998
Q ss_pred CC-CCCcccccc-cc----CCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCC---ceeEEEEeC
Q 004839 537 GG-GGKKWHHDG-RR----TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD---LFRAVVLEV 607 (728)
Q Consensus 537 g~-~G~~~~~~~-~~----~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~---~f~a~v~~~ 607 (728)
+. +|....... .. .+......|+.++++++.+.. .+++.++|||+||.+++.++. +|+ .++++++.+
T Consensus 119 ~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~~-~p~~~~~v~~~~~l~ 194 (395)
T PLN02872 119 RWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAALT-QPNVVEMVEAAALLC 194 (395)
T ss_pred ccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHhh-ChHHHHHHHHHHHhc
Confidence 73 333222211 11 111223469999999998642 468999999999999986664 687 577777777
Q ss_pred Ccc
Q 004839 608 PFL 610 (728)
Q Consensus 608 p~~ 610 (728)
|+.
T Consensus 195 P~~ 197 (395)
T PLN02872 195 PIS 197 (395)
T ss_pred chh
Confidence 764
No 86
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.36 E-value=1.6e-10 Score=117.50 Aligned_cols=207 Identities=14% Similarity=0.051 Sum_probs=129.9
Q ss_pred EEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCC--cCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCcccccc
Q 004839 470 YDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGEL--LDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDG 547 (728)
Q Consensus 470 ~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~--~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~ 547 (728)
+.+++..|. +.++++.|.+. ++.|+||++||..+.. ....|......|+++||.|+.+|+||+|.+......
T Consensus 3 ~~l~~~~g~-~~~~~~~p~~~---~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~~~-- 76 (266)
T TIGR03101 3 FFLDAPHGF-RFCLYHPPVAV---GPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDFAA-- 76 (266)
T ss_pred EEecCCCCc-EEEEEecCCCC---CCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccc--
Confidence 556777775 44555555432 3468999999853321 122345567889999999999999999875332211
Q ss_pred ccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhcc----------
Q 004839 548 RRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLL---------- 617 (728)
Q Consensus 548 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~---------- 617 (728)
..+ ....+|+.+++++|.+++ ..+|+++|+|+||.+++.++.++|++++++|+.+|+++-..++.
T Consensus 77 -~~~-~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lrl~~~~~ 151 (266)
T TIGR03101 77 -ARW-DVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLRLRLVAR 151 (266)
T ss_pred -CCH-HHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHHHHHHHH
Confidence 111 123578888899988764 46899999999999999999999999999999999877433210
Q ss_pred -CCCCCCC----------ccc-ccccCCCCCHHHHHHHHccCcccccccCCCCCeEEEEcCCC-CCCCHHHHHHHHHHHH
Q 004839 618 -YPILPLI----------AAD-YEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFN-TRFGVWEAAKWVARVR 684 (728)
Q Consensus 618 -~~~~~~~----------~~~-~~~~g~p~~~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D-~~Vp~~~~~~~~~~L~ 684 (728)
....... ... ....|..-.++..+.+.+.....-+.. ..+++++....+ ..-+...+.++.++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 229 (266)
T TIGR03101 152 RLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVPK--NCPVHWFEVRPEEGATLSPVFSRLGEQWV 229 (266)
T ss_pred hccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCCC--CCceEEEEeccccCCCCCHHHHHHHHHHH
Confidence 0000000 000 111233333344445544443322221 345677766543 4445567889999999
Q ss_pred hCCCC
Q 004839 685 ESTIY 689 (728)
Q Consensus 685 ~~~~~ 689 (728)
+.|+.
T Consensus 230 ~~g~~ 234 (266)
T TIGR03101 230 QSGVE 234 (266)
T ss_pred HcCCe
Confidence 99964
No 87
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.35 E-value=3e-11 Score=123.65 Aligned_cols=207 Identities=14% Similarity=0.053 Sum_probs=119.0
Q ss_pred CCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCC
Q 004839 494 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK 573 (728)
Q Consensus 494 ~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 573 (728)
...|.||++||.++.. ..|......|+ .+|.|+.+|.||+|..... ...+++++.+-+..+++. ..
T Consensus 14 ~~~~~iv~lhG~~~~~--~~~~~~~~~l~-~~~~vi~~D~~G~G~s~~~---------~~~~~~~~~~d~~~~l~~--l~ 79 (255)
T PRK10673 14 HNNSPIVLVHGLFGSL--DNLGVLARDLV-NDHDIIQVDMRNHGLSPRD---------PVMNYPAMAQDLLDTLDA--LQ 79 (255)
T ss_pred CCCCCEEEECCCCCch--hHHHHHHHHHh-hCCeEEEECCCCCCCCCCC---------CCCCHHHHHHHHHHHHHH--cC
Confidence 3458899999986654 34555556664 5799999999999975321 113555555544444443 24
Q ss_pred CCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCc-ccch-h----------hccCCCCCCC---ccc---------cc
Q 004839 574 EHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF-LDAT-N----------TLLYPILPLI---AAD---------YE 629 (728)
Q Consensus 574 ~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~-~d~~-~----------~~~~~~~~~~---~~~---------~~ 629 (728)
.+++.++|+|+||.+++.++.++|++++++|+..+- .+.. . .......... ... ..
T Consensus 80 ~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (255)
T PRK10673 80 IEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLNEEGVI 159 (255)
T ss_pred CCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcCCHHHH
Confidence 467999999999999999999999999999986421 1110 0 0000000000 000 00
Q ss_pred -----ccCC-CC--C-HHHHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcC
Q 004839 630 -----EFGY-PG--D-IDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLT 700 (728)
Q Consensus 630 -----~~g~-p~--~-~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 700 (728)
.+.. .+ . +...+.+........+.. ++.|+|+|+|+.|..|+...++.+.+.+... .+.+.++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~i~G~~D~~~~~~~~~~~~~~~~~~-------~~~~~~~ 231 (255)
T PRK10673 160 QFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPA-WPHPALFIRGGNSPYVTEAYRDDLLAQFPQA-------RAHVIAG 231 (255)
T ss_pred HHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCC-CCCCeEEEECCCCCCCCHHHHHHHHHhCCCc-------EEEEeCC
Confidence 0000 00 0 000011111111222333 7889999999999999988887777666432 2333689
Q ss_pred CCCCCCc-hhhhHHHHHHHHHHHHH
Q 004839 701 TDIVEEN-RYLQCKESALETAFLIK 724 (728)
Q Consensus 701 ~gH~~~~-~~~~~~~~~~~~afl~~ 724 (728)
+||...- ....+ ......||..
T Consensus 232 ~gH~~~~~~p~~~--~~~l~~fl~~ 254 (255)
T PRK10673 232 AGHWVHAEKPDAV--LRAIRRYLND 254 (255)
T ss_pred CCCeeeccCHHHH--HHHHHHHHhc
Confidence 9997533 33222 3334677754
No 88
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.35 E-value=2.6e-11 Score=122.57 Aligned_cols=104 Identities=18% Similarity=0.224 Sum_probs=77.8
Q ss_pred cEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHH-HHHHHHcCCCCCC
Q 004839 497 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISC-ARFLIEKEIVKEH 575 (728)
Q Consensus 497 P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~~ 575 (728)
|+||++||..+.. ..|......|+ +||.|+.+|.||+|..... ......++++++.. +..+++. .+.+
T Consensus 2 ~~vv~~hG~~~~~--~~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~ 70 (251)
T TIGR03695 2 PVLVFLHGFLGSG--ADWQALIELLG-PHFRCLAIDLPGHGSSQSP------DEIERYDFEEAAQDILATLLDQ--LGIE 70 (251)
T ss_pred CEEEEEcCCCCch--hhHHHHHHHhc-ccCeEEEEcCCCCCCCCCC------CccChhhHHHHHHHHHHHHHHH--cCCC
Confidence 7899999976543 45667777887 8999999999999875221 11122455666555 5555543 2457
Q ss_pred cEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 004839 576 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD 611 (728)
Q Consensus 576 ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d 611 (728)
++.++|||+||.+++.++.++|+.++++|+.+|...
T Consensus 71 ~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~ 106 (251)
T TIGR03695 71 PFFLVGYSMGGRIALYYALQYPERVQGLILESGSPG 106 (251)
T ss_pred eEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCC
Confidence 899999999999999999999999999999887644
No 89
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.35 E-value=2e-12 Score=128.75 Aligned_cols=188 Identities=16% Similarity=0.159 Sum_probs=119.0
Q ss_pred EEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEE
Q 004839 499 LLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLA 578 (728)
Q Consensus 499 vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~ 578 (728)
||++||..+.. ..|......| ++||.|+.+|+||+|.....- .....++++..+.+..++++-. .+++.
T Consensus 1 vv~~hG~~~~~--~~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~~------~~~~~~~~~~~~~l~~~l~~~~--~~~~~ 69 (228)
T PF12697_consen 1 VVFLHGFGGSS--ESWDPLAEAL-ARGYRVIAFDLPGHGRSDPPP------DYSPYSIEDYAEDLAELLDALG--IKKVI 69 (228)
T ss_dssp EEEE-STTTTG--GGGHHHHHHH-HTTSEEEEEECTTSTTSSSHS------SGSGGSHHHHHHHHHHHHHHTT--TSSEE
T ss_pred eEEECCCCCCH--HHHHHHHHHH-hCCCEEEEEecCCcccccccc------ccCCcchhhhhhhhhhcccccc--ccccc
Confidence 68999976654 5677777878 589999999999998753221 1123466777777666665422 27899
Q ss_pred EEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhc--------cCCCCCCCc---ccc--cccCCCCCHHHH-----
Q 004839 579 GWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL--------LYPILPLIA---ADY--EEFGYPGDIDDF----- 640 (728)
Q Consensus 579 i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~--------~~~~~~~~~---~~~--~~~g~p~~~~~~----- 640 (728)
++|+|+||.+++.++.++|++++++|+.+|........ ...-..... ... ..+......+..
T Consensus 70 lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (228)
T PF12697_consen 70 LVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIR 149 (228)
T ss_dssp EEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999988543210 000000000 000 000000000000
Q ss_pred -------HHH----HccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCC
Q 004839 641 -------HAI----RNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVE 705 (728)
Q Consensus 641 -------~~~----~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~ 705 (728)
+.+ ...++...+.. ++.|+++++|+.|..++.....++.+.+.. ..+...+++||..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pvl~i~g~~D~~~~~~~~~~~~~~~~~-------~~~~~~~~~gH~~ 217 (228)
T PF12697_consen 150 SSRRALAEYLRSNLWQADLSEALPR-IKVPVLVIHGEDDPIVPPESAEELADKLPN-------AELVVIPGAGHFL 217 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHG-SSSEEEEEEETTSSSSHHHHHHHHHHHSTT-------EEEEEETTSSSTH
T ss_pred ccccccccccccccccccccccccc-cCCCeEEeecCCCCCCCHHHHHHHHHHCCC-------CEEEEECCCCCcc
Confidence 111 11222344455 789999999999999997777777766643 2333378999974
No 90
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.34 E-value=8.6e-11 Score=128.81 Aligned_cols=125 Identities=17% Similarity=0.186 Sum_probs=85.0
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHH-HHHHHH---HCCeEEEEEcCCCCCCCCCcccccc
Q 004839 472 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS-ELKSLL---DRGWVVAFADVRGGGGGGKKWHHDG 547 (728)
Q Consensus 472 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~-~~~~l~---~~Gy~v~~~d~RG~g~~G~~~~~~~ 547 (728)
+.+..|.++++..-.|++. ...|.||++||..+.. ..|.. ....|+ ++||.|+.+|+||+|.+...
T Consensus 180 ~~~~~~~~l~~~~~gp~~~---~~k~~VVLlHG~~~s~--~~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p----- 249 (481)
T PLN03087 180 WLSSSNESLFVHVQQPKDN---KAKEDVLFIHGFISSS--AFWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKP----- 249 (481)
T ss_pred eEeeCCeEEEEEEecCCCC---CCCCeEEEECCCCccH--HHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCC-----
Confidence 3333456777655555432 2236799999986543 23442 223443 47999999999999876322
Q ss_pred ccCCCCCcHHHHHHHH-HHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 004839 548 RRTKKLNSIKDFISCA-RFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 610 (728)
Q Consensus 548 ~~~~~~~~~~D~~~~~-~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~ 610 (728)
.....+++++.+.+ +.+++.- +.+++.++||||||++++.++.++|++++++|+.+|..
T Consensus 250 --~~~~ytl~~~a~~l~~~ll~~l--g~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~ 309 (481)
T PLN03087 250 --ADSLYTLREHLEMIERSVLERY--KVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPY 309 (481)
T ss_pred --CCCcCCHHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCc
Confidence 01123567776666 3555442 34689999999999999999999999999999988643
No 91
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.34 E-value=9.7e-11 Score=122.15 Aligned_cols=102 Identities=19% Similarity=0.151 Sum_probs=76.7
Q ss_pred ccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004839 496 NPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 575 (728)
Q Consensus 496 ~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 575 (728)
.|.||++||.+... ..|......| .++|.|+.+|+||+|.++.. .....+++++.+.+..++++- +.+
T Consensus 34 ~~~iv~lHG~~~~~--~~~~~~~~~l-~~~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~ 101 (286)
T PRK03204 34 GPPILLCHGNPTWS--FLYRDIIVAL-RDRFRCVAPDYLGFGLSERP-------SGFGYQIDEHARVIGEFVDHL--GLD 101 (286)
T ss_pred CCEEEEECCCCccH--HHHHHHHHHH-hCCcEEEEECCCCCCCCCCC-------CccccCHHHHHHHHHHHHHHh--CCC
Confidence 47899999976422 3455555555 45799999999999975321 111236788888888888653 346
Q ss_pred cEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCc
Q 004839 576 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 609 (728)
Q Consensus 576 ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~ 609 (728)
++.++|+|+||.+++.++..+|++++++|+.++.
T Consensus 102 ~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~ 135 (286)
T PRK03204 102 RYLSMGQDWGGPISMAVAVERADRVRGVVLGNTW 135 (286)
T ss_pred CEEEEEECccHHHHHHHHHhChhheeEEEEECcc
Confidence 7999999999999999999999999999987664
No 92
>COG4099 Predicted peptidase [General function prediction only]
Probab=99.33 E-value=1.6e-11 Score=119.63 Aligned_cols=169 Identities=18% Similarity=0.112 Sum_probs=116.7
Q ss_pred CCCcEEEEEEEEcCCCCCCCCc-cEEEEEcCCCCCCcCcccHHH-----HHHHH--HCCeEEEEEcCCCCCCCCCccccc
Q 004839 475 HDGISVPLTIIYSPKYKKENQN-PGLLHGHGAYGELLDKRWRSE-----LKSLL--DRGWVVAFADVRGGGGGGKKWHHD 546 (728)
Q Consensus 475 ~dG~~i~~~l~~p~~~~~~~~~-P~vv~~hGg~~~~~~~~~~~~-----~~~l~--~~Gy~v~~~d~RG~g~~G~~~~~~ 546 (728)
.-|.++++.++.|++..+++++ |+||+.||+-....+. .... .-.++ +-++-|+.|.|- .-|...
T Consensus 169 ~tgneLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~dn-~~~l~sg~gaiawa~pedqcfVlAPQy~------~if~d~ 241 (387)
T COG4099 169 STGNELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSDN-DKVLSSGIGAIAWAGPEDQCFVLAPQYN------PIFADS 241 (387)
T ss_pred ccCceeeEEEecccccCCCCccccEEEEEecCCCCCchh-hhhhhcCccceeeecccCceEEEccccc------cccccc
Confidence 3578999999999999888888 9999999974433211 1110 01111 123455555522 111111
Q ss_pred cccCCCCCcHHHHHHHHH-HHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCCCCc
Q 004839 547 GRRTKKLNSIKDFISCAR-FLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIA 625 (728)
Q Consensus 547 ~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~ 625 (728)
.. .-.+.....++.++ -|.++..+|.+||.+.|.|+||+++.+++.++|+.|+|++..+|--|-
T Consensus 242 e~--~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~------------- 306 (387)
T COG4099 242 EE--KTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR------------- 306 (387)
T ss_pred cc--ccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCch-------------
Confidence 11 11223344455555 666788899999999999999999999999999999999998882220
Q ss_pred ccccccCCCCCHHHHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCC
Q 004839 626 ADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTI 688 (728)
Q Consensus 626 ~~~~~~g~p~~~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~ 688 (728)
+ . .++...+.|.-++|+..|..+|.+.|+-.+++|++.+.
T Consensus 307 --------v--------------~-lv~~lk~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~~~ 346 (387)
T COG4099 307 --------V--------------Y-LVRTLKKAPIWVFHSSDDKVIPVSNSRVLYERLKALDR 346 (387)
T ss_pred --------h--------------h-hhhhhccCceEEEEecCCCccccCcceeehHHHHhhcc
Confidence 0 0 11112467889999999999999999999999999774
No 93
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.33 E-value=1.4e-10 Score=116.49 Aligned_cols=234 Identities=21% Similarity=0.243 Sum_probs=140.4
Q ss_pred EEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccC
Q 004839 471 DVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT 550 (728)
Q Consensus 471 ~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~ 550 (728)
.+...||..+.....-++ ...+.|+||..||--|+...+.-......+.++||.|+++|.||+++.-.. ....
T Consensus 53 ~v~~pdg~~~~ldw~~~p---~~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~----~p~~ 125 (345)
T COG0429 53 RLETPDGGFIDLDWSEDP---RAAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANT----SPRL 125 (345)
T ss_pred EEEcCCCCEEEEeeccCc---cccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCccc----Ccce
Confidence 445557765554443332 234569999999976655545334566888889999999999999864211 1111
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCC---ceeEEEEeCCcccchhh--------c---
Q 004839 551 KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD---LFRAVVLEVPFLDATNT--------L--- 616 (728)
Q Consensus 551 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~---~f~a~v~~~p~~d~~~~--------~--- 616 (728)
.-....+|+..+++++.++.. +.++.++|.|+||.|.+..+.+..+ +-+|++..+| +|+..- .
T Consensus 126 yh~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P-~Dl~~~~~~l~~~~s~~l 202 (345)
T COG0429 126 YHSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAP-FDLEACAYRLDSGFSLRL 202 (345)
T ss_pred ecccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCH-HHHHHHHHHhcCchhhhh
Confidence 122355999999999998654 5789999999999555555544322 3344444444 343210 0
Q ss_pred -------------------cCCCCCCCc-------cccccc---------CCCCCHHHHHHHHccCcccccccCCCCCeE
Q 004839 617 -------------------LYPILPLIA-------ADYEEF---------GYPGDIDDFHAIRNYSPYDNIQKDVLYPAV 661 (728)
Q Consensus 617 -------------------~~~~~~~~~-------~~~~~~---------g~p~~~~~~~~~~~~sP~~~i~~~~~~P~l 661 (728)
+.+..|... ....|| |.+ ...++|++-|++..+.+ |..|+|
T Consensus 203 y~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~---da~dYYr~aSs~~~L~~-Ir~PtL 278 (345)
T COG0429 203 YSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFA---DAEDYYRQASSLPLLPK-IRKPTL 278 (345)
T ss_pred hHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCC---cHHHHHHhccccccccc-cccceE
Confidence 012222220 001111 332 35688999999999997 999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEE--EcCCCCCCC-c-hhhhH--HHHHHHHHHHHHhh
Q 004839 662 LVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEE-N-RYLQC--KESALETAFLIKMM 726 (728)
Q Consensus 662 li~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~-~-~~~~~--~~~~~~~afl~~~l 726 (728)
+||+..|+.+++..--+.-.. ... .|.+ -.-+||.+- . +..+- =......+||...+
T Consensus 279 ii~A~DDP~~~~~~iP~~~~~-~np-------~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~ 341 (345)
T COG0429 279 IINAKDDPFMPPEVIPKLQEM-LNP-------NVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFL 341 (345)
T ss_pred EEecCCCCCCChhhCCcchhc-CCC-------ceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHH
Confidence 999999998887443332222 111 2333 567889732 1 21111 12344678887765
No 94
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.32 E-value=1e-10 Score=120.86 Aligned_cols=106 Identities=21% Similarity=0.245 Sum_probs=80.2
Q ss_pred CCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCC
Q 004839 494 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK 573 (728)
Q Consensus 494 ~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 573 (728)
+..|.||++||..+.. ..|......|.++||.|+.+|+||+|..... .....+++++.+.+..++++-. .
T Consensus 16 ~~~p~vvliHG~~~~~--~~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~-------~~~~~~~~~~~~~l~~~i~~l~-~ 85 (273)
T PLN02211 16 RQPPHFVLIHGISGGS--WCWYKIRCLMENSGYKVTCIDLKSAGIDQSD-------ADSVTTFDEYNKPLIDFLSSLP-E 85 (273)
T ss_pred CCCCeEEEECCCCCCc--CcHHHHHHHHHhCCCEEEEecccCCCCCCCC-------cccCCCHHHHHHHHHHHHHhcC-C
Confidence 4568999999975543 4577778888889999999999999853111 1122467777766666654421 2
Q ss_pred CCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCc
Q 004839 574 EHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 609 (728)
Q Consensus 574 ~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~ 609 (728)
.+++.++||||||.++..++.++|++++++|..++.
T Consensus 86 ~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~ 121 (273)
T PLN02211 86 NEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAAT 121 (273)
T ss_pred CCCEEEEEECchHHHHHHHHHhChhheeEEEEeccc
Confidence 378999999999999999999899999999998764
No 95
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.31 E-value=5.4e-11 Score=127.84 Aligned_cols=108 Identities=20% Similarity=0.212 Sum_probs=77.2
Q ss_pred CccEEEEEcCCCCCC---cCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcH--HHHHHHHHHHHHc
Q 004839 495 QNPGLLHGHGAYGEL---LDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSI--KDFISCARFLIEK 569 (728)
Q Consensus 495 ~~P~vv~~hGg~~~~---~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~--~D~~~~~~~l~~~ 569 (728)
+.| ||++||-.... ....+...+..|+++||.|+++|+||+|..... ....++ +|+.++++++.++
T Consensus 62 ~~p-vl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~~--------~~~~d~~~~~~~~~v~~l~~~ 132 (350)
T TIGR01836 62 KTP-LLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDRADRY--------LTLDDYINGYIDKCVDYICRT 132 (350)
T ss_pred CCc-EEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCHHHhc--------CCHHHHHHHHHHHHHHHHHHH
Confidence 345 77888732211 111234678899999999999999987742111 111122 3466788888865
Q ss_pred CCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccch
Q 004839 570 EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDAT 613 (728)
Q Consensus 570 ~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~ 613 (728)
. ..+++.++|||+||.+++.++..+|+.++++|+.+|.+++.
T Consensus 133 ~--~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~ 174 (350)
T TIGR01836 133 S--KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFE 174 (350)
T ss_pred h--CCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccC
Confidence 3 34689999999999999999998999999999999988754
No 96
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.31 E-value=4e-11 Score=121.03 Aligned_cols=185 Identities=15% Similarity=0.098 Sum_probs=110.4
Q ss_pred cEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 004839 497 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK 576 (728)
Q Consensus 497 P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 576 (728)
|.||++||..+.. ..|......|. .+|.|+.+|+||+|..... ...+++++.+.+..+. .++
T Consensus 5 ~~iv~~HG~~~~~--~~~~~~~~~l~-~~~~vi~~d~~G~G~s~~~---------~~~~~~~~~~~~~~~~------~~~ 66 (245)
T TIGR01738 5 VHLVLIHGWGMNA--EVFRCLDEELS-AHFTLHLVDLPGHGRSRGF---------GPLSLADAAEAIAAQA------PDP 66 (245)
T ss_pred ceEEEEcCCCCch--hhHHHHHHhhc-cCeEEEEecCCcCccCCCC---------CCcCHHHHHHHHHHhC------CCC
Confidence 6789999864432 34555666665 5799999999999974211 1134555554433322 268
Q ss_pred EEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCC-CCC----------CC---c---ccc---cccCCCCC
Q 004839 577 LAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYP-ILP----------LI---A---ADY---EEFGYPGD 636 (728)
Q Consensus 577 i~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~-~~~----------~~---~---~~~---~~~g~p~~ 636 (728)
+.++|+|+||++++.++.++|++++++|+.++...+....... ... +. . ..+ ..++.+..
T Consensus 67 ~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (245)
T TIGR01738 67 AIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTPTA 146 (245)
T ss_pred eEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999876643221000000 000 00 0 000 00111110
Q ss_pred HHH----------------------HHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCcc
Q 004839 637 IDD----------------------FHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRP 694 (728)
Q Consensus 637 ~~~----------------------~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~ 694 (728)
... .+.+...+....+.+ +++|+|+++|..|..||+.....+.+.+.. ..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~Pvlii~g~~D~~~~~~~~~~~~~~~~~-------~~ 218 (245)
T TIGR01738 147 RQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQN-ISVPFLRLYGYLDGLVPAKVVPYLDKLAPH-------SE 218 (245)
T ss_pred chHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhc-CCCCEEEEeecCCcccCHHHHHHHHHhCCC-------Ce
Confidence 000 001111111123444 899999999999999999888887776642 22
Q ss_pred EEEEcCCCCCCCc
Q 004839 695 ILLNLTTDIVEEN 707 (728)
Q Consensus 695 ~~~~~~~gH~~~~ 707 (728)
+..++++||...-
T Consensus 219 ~~~~~~~gH~~~~ 231 (245)
T TIGR01738 219 LYIFAKAAHAPFL 231 (245)
T ss_pred EEEeCCCCCCccc
Confidence 3337899998544
No 97
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.30 E-value=1.6e-10 Score=124.48 Aligned_cols=101 Identities=23% Similarity=0.265 Sum_probs=72.9
Q ss_pred cEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 004839 497 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK 576 (728)
Q Consensus 497 P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 576 (728)
|.||++||..++. ..|...+..|++ +|.|+.+|+||+|.+... .. ...+++++.+.+..++++- ..++
T Consensus 89 p~lvllHG~~~~~--~~w~~~~~~L~~-~~~via~Dl~G~G~S~~~------~~-~~~~~~~~a~~l~~~l~~l--~~~~ 156 (360)
T PLN02679 89 PPVLLVHGFGASI--PHWRRNIGVLAK-NYTVYAIDLLGFGASDKP------PG-FSYTMETWAELILDFLEEV--VQKP 156 (360)
T ss_pred CeEEEECCCCCCH--HHHHHHHHHHhc-CCEEEEECCCCCCCCCCC------CC-ccccHHHHHHHHHHHHHHh--cCCC
Confidence 7899999976543 456666666654 899999999999975321 00 1235566665555555432 3368
Q ss_pred EEEEEeCccHHHHHHHHH-hCCCceeEEEEeCCc
Q 004839 577 LAGWGYSAGGLLVAAAIN-CCPDLFRAVVLEVPF 609 (728)
Q Consensus 577 i~i~G~S~GG~~~~~~~~-~~p~~f~a~v~~~p~ 609 (728)
+.++|+|+||++++.++. .+|++++++|+.++.
T Consensus 157 ~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~ 190 (360)
T PLN02679 157 TVLIGNSVGSLACVIAASESTRDLVRGLVLLNCA 190 (360)
T ss_pred eEEEEECHHHHHHHHHHHhcChhhcCEEEEECCc
Confidence 999999999999988776 469999999988764
No 98
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.30 E-value=2.3e-10 Score=124.79 Aligned_cols=126 Identities=17% Similarity=0.138 Sum_probs=78.8
Q ss_pred EEECCCCc--EEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccc
Q 004839 471 DVPSHDGI--SVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGR 548 (728)
Q Consensus 471 ~~~s~dG~--~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~ 548 (728)
++.+.||. .+.. +..+.. +..|+||++||..+.. ..|......|++ +|.|+.+|+||+|.+.+.-..
T Consensus 83 ~~~~~~~~~~~~~~-~~~~~~----~~~p~vvllHG~~~~~--~~~~~~~~~L~~-~~~vi~~D~rG~G~S~~~~~~--- 151 (402)
T PLN02894 83 WFRSASNEPRFINT-VTFDSK----EDAPTLVMVHGYGASQ--GFFFRNFDALAS-RFRVIAIDQLGWGGSSRPDFT--- 151 (402)
T ss_pred ceecccCcCCeEEE-EEecCC----CCCCEEEEECCCCcch--hHHHHHHHHHHh-CCEEEEECCCCCCCCCCCCcc---
Confidence 34445554 4543 333322 3458999999975432 334445566655 699999999999976432110
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCc
Q 004839 549 RTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 609 (728)
Q Consensus 549 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~ 609 (728)
........+.+++.+..+++. .+.+++.++|||+||++++.++.++|++++++|+.+|.
T Consensus 152 ~~~~~~~~~~~~~~i~~~~~~--l~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~ 210 (402)
T PLN02894 152 CKSTEETEAWFIDSFEEWRKA--KNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPA 210 (402)
T ss_pred cccHHHHHHHHHHHHHHHHHH--cCCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCc
Confidence 000000112233333333322 24468999999999999999999999999999988764
No 99
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=99.30 E-value=4.8e-11 Score=129.55 Aligned_cols=141 Identities=19% Similarity=0.196 Sum_probs=111.4
Q ss_pred CceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcC----cccHHHH--HHHHHCCeEEEEEcCCCCC
Q 004839 464 FYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLD----KRWRSEL--KSLLDRGWVVAFADVRGGG 537 (728)
Q Consensus 464 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~----~~~~~~~--~~l~~~Gy~v~~~d~RG~g 537 (728)
.+....+.++-+||++|...|++|++. ++.|+++..+-.|-.... ......- ..++++||+|+..|.||.+
T Consensus 16 ~~~~~~v~V~MRDGvrL~~dIy~Pa~~---g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~ 92 (563)
T COG2936 16 GYIERDVMVPMRDGVRLAADIYRPAGA---GPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRG 92 (563)
T ss_pred ceeeeeeeEEecCCeEEEEEEEccCCC---CCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccc
Confidence 366777899999999999999999864 788999887722221111 1111111 3799999999999999999
Q ss_pred CCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccch
Q 004839 538 GGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDAT 613 (728)
Q Consensus 538 ~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~ 613 (728)
++...|.--.. ...+|-.+.|+|+.+|++.+ .+||.+|.||+|+..+++|+..|.-.||++...+..|..
T Consensus 93 ~SeG~~~~~~~-----~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~y 162 (563)
T COG2936 93 GSEGVFDPESS-----REAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDRY 162 (563)
T ss_pred cCCcccceecc-----ccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeecccccccccc
Confidence 88655543222 37789999999999999988 899999999999999999998888889999999988864
No 100
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.29 E-value=7e-10 Score=111.92 Aligned_cols=104 Identities=21% Similarity=0.241 Sum_probs=79.3
Q ss_pred CCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHc-CCC
Q 004839 494 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEK-EIV 572 (728)
Q Consensus 494 ~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~ 572 (728)
+..|+|+++||-|... .+|......|+++||.|+++|.||.|.+ ......-..++.-+...+..|++. +
T Consensus 42 ~~gP~illlHGfPe~w--yswr~q~~~la~~~~rviA~DlrGyG~S------d~P~~~~~Yt~~~l~~di~~lld~Lg-- 111 (322)
T KOG4178|consen 42 GDGPIVLLLHGFPESW--YSWRHQIPGLASRGYRVIAPDLRGYGFS------DAPPHISEYTIDELVGDIVALLDHLG-- 111 (322)
T ss_pred CCCCEEEEEccCCccc--hhhhhhhhhhhhcceEEEecCCCCCCCC------CCCCCcceeeHHHHHHHHHHHHHHhc--
Confidence 4469999999988754 5567788999999999999999999865 222222233455555445545443 3
Q ss_pred CCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCC
Q 004839 573 KEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVP 608 (728)
Q Consensus 573 d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p 608 (728)
-+|+.+.||++|+.++..++..+|+++.+.|+...
T Consensus 112 -~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv 146 (322)
T KOG4178|consen 112 -LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNV 146 (322)
T ss_pred -cceeEEEeccchhHHHHHHHHhChhhcceEEEecC
Confidence 37999999999999999999999999999987653
No 101
>PRK06489 hypothetical protein; Provisional
Probab=99.25 E-value=1.3e-10 Score=125.37 Aligned_cols=109 Identities=18% Similarity=0.127 Sum_probs=71.0
Q ss_pred ccEEEEEcCCCCCCcCcccH--HHHHH-------HHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHH-
Q 004839 496 NPGLLHGHGAYGELLDKRWR--SELKS-------LLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARF- 565 (728)
Q Consensus 496 ~P~vv~~hGg~~~~~~~~~~--~~~~~-------l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~- 565 (728)
.|.||++||..++.. .|. ..... +..++|.|+.+|+||+|.+...- ..........+++|+++.+..
T Consensus 69 gpplvllHG~~~~~~--~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p~-~~~~~~~~~~~~~~~a~~~~~~ 145 (360)
T PRK06489 69 DNAVLVLHGTGGSGK--SFLSPTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKPS-DGLRAAFPRYDYDDMVEAQYRL 145 (360)
T ss_pred CCeEEEeCCCCCchh--hhccchhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCCC-cCCCCCCCcccHHHHHHHHHHH
Confidence 578999999866432 222 12222 23578999999999999652110 000000012467777755433
Q ss_pred HHHcCCCCCCcEE-EEEeCccHHHHHHHHHhCCCceeEEEEeCCc
Q 004839 566 LIEKEIVKEHKLA-GWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 609 (728)
Q Consensus 566 l~~~~~~d~~ri~-i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~ 609 (728)
+.++- +-+++. ++|+||||++++.++.++|++++++|+.++.
T Consensus 146 l~~~l--gi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~ 188 (360)
T PRK06489 146 VTEGL--GVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQ 188 (360)
T ss_pred HHHhc--CCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccC
Confidence 44432 225664 8999999999999999999999999988764
No 102
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.25 E-value=7.5e-10 Score=115.58 Aligned_cols=198 Identities=18% Similarity=0.232 Sum_probs=131.3
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCC---CCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCc
Q 004839 466 SCEQYDVPSHDGISVPLTIIYSPKYK---KENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKK 542 (728)
Q Consensus 466 ~~~~~~~~s~dG~~i~~~l~~p~~~~---~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~ 542 (728)
.-++..++..||-.+-...+.+.+.. ..+..|+||++||-.+++.+..-......+.++||.++++|.||.++.--.
T Consensus 92 ~y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~Lt 171 (409)
T KOG1838|consen 92 EYTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLT 171 (409)
T ss_pred cceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccC
Confidence 33455566678888877666555431 134579999999987776655445566777889999999999997764111
Q ss_pred cccccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCC---CceeEEEEeCCcccch---hhc
Q 004839 543 WHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCP---DLFRAVVLEVPFLDAT---NTL 616 (728)
Q Consensus 543 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p---~~f~a~v~~~p~~d~~---~~~ 616 (728)
.....-...-+|+.++++++.++-- + .++.++|.|+||.|....+++.. .+.+|++..+|+ |.. ..+
T Consensus 172 ----Tpr~f~ag~t~Dl~~~v~~i~~~~P-~-a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pw-d~~~~~~~~ 244 (409)
T KOG1838|consen 172 ----TPRLFTAGWTEDLREVVNHIKKRYP-Q-APLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPW-DLLAASRSI 244 (409)
T ss_pred ----CCceeecCCHHHHHHHHHHHHHhCC-C-CceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccc-hhhhhhhHH
Confidence 1111222457999999999987632 1 37999999999999999887643 355666655664 431 000
Q ss_pred ------------cCCCCC---------C--------------Cccccc------ccCCCCCHHHHHHHHccCcccccccC
Q 004839 617 ------------LYPILP---------L--------------IAADYE------EFGYPGDIDDFHAIRNYSPYDNIQKD 655 (728)
Q Consensus 617 ------------~~~~~~---------~--------------~~~~~~------~~g~p~~~~~~~~~~~~sP~~~i~~~ 655 (728)
+...+. + +..+++ .+|.+. ..++|.+-|++.++++
T Consensus 245 ~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~---~deYY~~aSs~~~v~~- 320 (409)
T KOG1838|consen 245 ETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKS---VDEYYKKASSSNYVDK- 320 (409)
T ss_pred hcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCc---HHHHHhhcchhhhccc-
Confidence 000000 0 000111 123333 4578899999999998
Q ss_pred CCCCeEEEEcCCCCCCCHH
Q 004839 656 VLYPAVLVTSSFNTRFGVW 674 (728)
Q Consensus 656 ~~~P~lli~g~~D~~Vp~~ 674 (728)
|+.|.|+|++..|+.||..
T Consensus 321 I~VP~L~ina~DDPv~p~~ 339 (409)
T KOG1838|consen 321 IKVPLLCINAADDPVVPEE 339 (409)
T ss_pred ccccEEEEecCCCCCCCcc
Confidence 9999999999999988864
No 103
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.24 E-value=2.6e-10 Score=116.96 Aligned_cols=190 Identities=13% Similarity=0.068 Sum_probs=113.4
Q ss_pred cEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 004839 497 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK 576 (728)
Q Consensus 497 P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 576 (728)
|.||++||..++. ..|......|.+ .|.|+.+|.||+|.+.. . ...+++++.+. +.+. ..++
T Consensus 14 ~~ivllHG~~~~~--~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~------~---~~~~~~~~~~~---l~~~---~~~~ 75 (256)
T PRK10349 14 VHLVLLHGWGLNA--EVWRCIDEELSS-HFTLHLVDLPGFGRSRG------F---GALSLADMAEA---VLQQ---APDK 75 (256)
T ss_pred CeEEEECCCCCCh--hHHHHHHHHHhc-CCEEEEecCCCCCCCCC------C---CCCCHHHHHHH---HHhc---CCCC
Confidence 5689999965433 456766777754 59999999999996521 1 12355555443 3333 2478
Q ss_pred EEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhcc----------------CCCCCCCccccc---ccCCCCCH
Q 004839 577 LAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLL----------------YPILPLIAADYE---EFGYPGDI 637 (728)
Q Consensus 577 i~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~----------------~~~~~~~~~~~~---~~g~p~~~ 637 (728)
+.++|||+||++++.++.++|++++.+|+..+......... ..........+. .++.+...
T Consensus 76 ~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (256)
T PRK10349 76 AIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETAR 155 (256)
T ss_pred eEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHccCchHH
Confidence 99999999999999999999999999998766322110000 000000000000 00111000
Q ss_pred H----------------------HHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccE
Q 004839 638 D----------------------DFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPI 695 (728)
Q Consensus 638 ~----------------------~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~ 695 (728)
. ..+.+...+....+.+ +++|+|+|+|+.|..+|...+..+.+.+... .+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~lii~G~~D~~~~~~~~~~~~~~i~~~-------~~ 227 (256)
T PRK10349 156 QDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQN-VSMPFLRLYGYLDGLVPRKVVPMLDKLWPHS-------ES 227 (256)
T ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhh-cCCCeEEEecCCCccCCHHHHHHHHHhCCCC-------eE
Confidence 0 0011122222233444 8999999999999989988877666666432 23
Q ss_pred EEEcCCCCCCCc-hhhhH
Q 004839 696 LLNLTTDIVEEN-RYLQC 712 (728)
Q Consensus 696 ~~~~~~gH~~~~-~~~~~ 712 (728)
.+.+++||...- .++.+
T Consensus 228 ~~i~~~gH~~~~e~p~~f 245 (256)
T PRK10349 228 YIFAKAAHAPFISHPAEF 245 (256)
T ss_pred EEeCCCCCCccccCHHHH
Confidence 337999998654 43333
No 104
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.22 E-value=1.8e-10 Score=124.96 Aligned_cols=102 Identities=20% Similarity=0.277 Sum_probs=77.8
Q ss_pred CccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCC
Q 004839 495 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 574 (728)
Q Consensus 495 ~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 574 (728)
..|.||++||..+.. ..|......|. ++|.|+.+|+||+|.+... ....+++++.+.+..+++. .+.
T Consensus 130 ~~~~vl~~HG~~~~~--~~~~~~~~~l~-~~~~v~~~d~~g~G~s~~~--------~~~~~~~~~~~~~~~~~~~--~~~ 196 (371)
T PRK14875 130 DGTPVVLIHGFGGDL--NNWLFNHAALA-AGRPVIALDLPGHGASSKA--------VGAGSLDELAAAVLAFLDA--LGI 196 (371)
T ss_pred CCCeEEEECCCCCcc--chHHHHHHHHh-cCCEEEEEcCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHh--cCC
Confidence 357899999865533 34555555554 4699999999999976321 1234678888777777754 466
Q ss_pred CcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCc
Q 004839 575 HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 609 (728)
Q Consensus 575 ~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~ 609 (728)
.++.++|||+||++++.++.++|++++++|+.+|.
T Consensus 197 ~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~ 231 (371)
T PRK14875 197 ERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPA 231 (371)
T ss_pred ccEEEEeechHHHHHHHHHHhCchheeEEEEECcC
Confidence 78999999999999999999899999999998875
No 105
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.22 E-value=7.2e-11 Score=116.72 Aligned_cols=168 Identities=19% Similarity=0.114 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhh---ccCC--CCCCCcccc---
Q 004839 557 KDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNT---LLYP--ILPLIAADY--- 628 (728)
Q Consensus 557 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~---~~~~--~~~~~~~~~--- 628 (728)
+=+..+++||.+++.+++++|+|+|.|.||-+++.+++.+| .++|+|+.+|-.-.... .... .+|......
T Consensus 4 Eyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~~ 82 (213)
T PF08840_consen 4 EYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISKF 82 (213)
T ss_dssp HHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG-
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhhc
Confidence 45778999999999999999999999999999999999988 78999999885433221 1111 111110000
Q ss_pred --cccCCCCCHHHHHHHH-c--cCcccccccCCCCCeEEEEcCCCCCCCHHH-HHHHHHHHHhCCCCCCCccEEEEcCCC
Q 004839 629 --EEFGYPGDIDDFHAIR-N--YSPYDNIQKDVLYPAVLVTSSFNTRFGVWE-AAKWVARVRESTIYDPKRPILLNLTTD 702 (728)
Q Consensus 629 --~~~g~p~~~~~~~~~~-~--~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~-~~~~~~~L~~~~~~~~~~~~~~~~~~g 702 (728)
...+.......+.... . ....-.+.+ +++|+|||.|+.|...|-.+ +.++.++|++++.+.. ..++.|+++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~-i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~-~~~l~Y~~aG 160 (213)
T PF08840_consen 83 SWNEPGLLRSRYAFELADDKAVEEARIPVEK-IKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHN-VEHLSYPGAG 160 (213)
T ss_dssp EE-TTS-EE-TT-B--TTTGGGCCCB--GGG---SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT------EEEEETTB-
T ss_pred eecCCcceehhhhhhcccccccccccccHHH-cCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCc-ceEEEcCCCC
Confidence 0001100000000000 0 000112344 78999999999998888766 4467788998885420 1222299999
Q ss_pred CCCCc------h---------------------hhhHHHHHHHHHHHHHhhc
Q 004839 703 IVEEN------R---------------------YLQCKESALETAFLIKMME 727 (728)
Q Consensus 703 H~~~~------~---------------------~~~~~~~~~~~afl~~~l~ 727 (728)
|.+.. + ..+.+.+..+++||.++|+
T Consensus 161 H~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 161 HLIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp S---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ceecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 97432 1 1345566678999999996
No 106
>PLN02578 hydrolase
Probab=99.21 E-value=6e-10 Score=119.86 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=68.4
Q ss_pred cEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 004839 497 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK 576 (728)
Q Consensus 497 P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 576 (728)
|.||++||..+.. ..|......|+ ++|.|+.+|+||+|.+..... ..+.+++.+.+..++++- ..++
T Consensus 87 ~~vvliHG~~~~~--~~w~~~~~~l~-~~~~v~~~D~~G~G~S~~~~~--------~~~~~~~a~~l~~~i~~~--~~~~ 153 (354)
T PLN02578 87 LPIVLIHGFGASA--FHWRYNIPELA-KKYKVYALDLLGFGWSDKALI--------EYDAMVWRDQVADFVKEV--VKEP 153 (354)
T ss_pred CeEEEECCCCCCH--HHHHHHHHHHh-cCCEEEEECCCCCCCCCCccc--------ccCHHHHHHHHHHHHHHh--ccCC
Confidence 5578999865432 34555556665 579999999999997644321 123333332222222221 1367
Q ss_pred EEEEEeCccHHHHHHHHHhCCCceeEEEEeCCc
Q 004839 577 LAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 609 (728)
Q Consensus 577 i~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~ 609 (728)
+.++|||+||++++.++.++|++++++|+.++.
T Consensus 154 ~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~ 186 (354)
T PLN02578 154 AVLVGNSLGGFTALSTAVGYPELVAGVALLNSA 186 (354)
T ss_pred eEEEEECHHHHHHHHHHHhChHhcceEEEECCC
Confidence 999999999999999999999999999987653
No 107
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.20 E-value=5.6e-10 Score=104.27 Aligned_cols=227 Identities=14% Similarity=0.061 Sum_probs=145.0
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCcccc
Q 004839 466 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHH 545 (728)
Q Consensus 466 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~ 545 (728)
....+.++.+.+.++-+.+. ..+..-++|++||.-...........+..|++.||.++.+|++|.|++...|+-
T Consensus 9 ~~~~ivi~n~~ne~lvg~lh------~tgs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~ 82 (269)
T KOG4667|consen 9 IAQKIVIPNSRNEKLVGLLH------ETGSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFYY 82 (269)
T ss_pred eeeEEEeccCCCchhhccee------ccCCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCcccc
Confidence 55667777777766555332 234567999999864433222223456778889999999999999988666654
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCCCCc
Q 004839 546 DGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIA 625 (728)
Q Consensus 546 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~ 625 (728)
.. +....+|+..+++++-.... ---+|.|||-||..++..+.++++ ++-+|..+|-.|........-.+...
T Consensus 83 Gn----~~~eadDL~sV~q~~s~~nr---~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~eRlg~~~l 154 (269)
T KOG4667|consen 83 GN----YNTEADDLHSVIQYFSNSNR---VVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINERLGEDYL 154 (269)
T ss_pred Cc----ccchHHHHHHHHHHhccCce---EEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhhhhcccHH
Confidence 22 22356999999999875321 223799999999999999998877 56677777766655432111011111
Q ss_pred ccccc------------cCCCCCHHH-HHHHHc-cCcc-cccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCC
Q 004839 626 ADYEE------------FGYPGDIDD-FHAIRN-YSPY-DNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYD 690 (728)
Q Consensus 626 ~~~~~------------~g~p~~~~~-~~~~~~-~sP~-~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~ 690 (728)
.+..+ ++..+.++- ++.+.. .++. -.|+ +++|+|-+||..|.+||.+++.+|++.+..++
T Consensus 155 ~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLntd~h~aclkId--~~C~VLTvhGs~D~IVPve~AkefAk~i~nH~--- 229 (269)
T KOG4667|consen 155 ERIKEQGFIDVGPRKGKYGYRVTEESLMDRLNTDIHEACLKID--KQCRVLTVHGSEDEIVPVEDAKEFAKIIPNHK--- 229 (269)
T ss_pred HHHHhCCceecCcccCCcCceecHHHHHHHHhchhhhhhcCcC--ccCceEEEeccCCceeechhHHHHHHhccCCc---
Confidence 11111 122222211 122211 1111 1244 58999999999999999999999999987743
Q ss_pred CCccEEEEcCCCCCCCchhhhHHHH
Q 004839 691 PKRPILLNLTTDIVEENRYLQCKES 715 (728)
Q Consensus 691 ~~~~~~~~~~~gH~~~~~~~~~~~~ 715 (728)
+.+.+++.|.+.....++...
T Consensus 230 ----L~iIEgADHnyt~~q~~l~~l 250 (269)
T KOG4667|consen 230 ----LEIIEGADHNYTGHQSQLVSL 250 (269)
T ss_pred ----eEEecCCCcCccchhhhHhhh
Confidence 233689999987766555433
No 108
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.20 E-value=7.5e-10 Score=119.10 Aligned_cols=113 Identities=21% Similarity=0.284 Sum_probs=77.2
Q ss_pred ccEEEEEcCCCCCCcCc---------ccHHHH---HHHHHCCeEEEEEcCCC--CCCCCC-cccccccc---CCCCCcHH
Q 004839 496 NPGLLHGHGAYGELLDK---------RWRSEL---KSLLDRGWVVAFADVRG--GGGGGK-KWHHDGRR---TKKLNSIK 557 (728)
Q Consensus 496 ~P~vv~~hGg~~~~~~~---------~~~~~~---~~l~~~Gy~v~~~d~RG--~g~~G~-~~~~~~~~---~~~~~~~~ 557 (728)
.|.||++||-.++.... .|...+ ..|...+|.|+++|+|| +|..+. .+...+.. .....+++
T Consensus 31 ~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~~~~~~~~~~~~~~~~~~~~~ 110 (351)
T TIGR01392 31 SNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGPSSINPGGRPYGSDFPLITIR 110 (351)
T ss_pred CCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCCCCCCCCCCcCCCCCCCCcHH
Confidence 47899999965532111 133332 35667899999999999 444432 11111110 01135788
Q ss_pred HHHHHHHHHHHcCCCCCCc-EEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 004839 558 DFISCARFLIEKEIVKEHK-LAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 610 (728)
Q Consensus 558 D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~ 610 (728)
|+.+.+..++++- .-++ +.++|+||||.+++.++.++|++++++|+.++..
T Consensus 111 ~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 162 (351)
T TIGR01392 111 DDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSA 162 (351)
T ss_pred HHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCC
Confidence 8888887777653 2356 9999999999999999999999999999888754
No 109
>COG0400 Predicted esterase [General function prediction only]
Probab=99.17 E-value=8.8e-10 Score=106.88 Aligned_cols=185 Identities=13% Similarity=0.062 Sum_probs=118.1
Q ss_pred CCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccc-cccCCC----CCcHHHHHHHHHHHHH
Q 004839 494 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHD-GRRTKK----LNSIKDFISCARFLIE 568 (728)
Q Consensus 494 ~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~-~~~~~~----~~~~~D~~~~~~~l~~ 568 (728)
...|+||+.||--+ ...+|....+.++ -.+.++.++-+-.-..+..|... ....+. ......+.+.++.+.+
T Consensus 16 p~~~~iilLHG~Gg--de~~~~~~~~~~~-P~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~~~ 92 (207)
T COG0400 16 PAAPLLILLHGLGG--DELDLVPLPELIL-PNATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEELAE 92 (207)
T ss_pred CCCcEEEEEecCCC--ChhhhhhhhhhcC-CCCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHHHH
Confidence 34689999998422 3344444333332 34556555443332333333321 111111 1122334455666666
Q ss_pred cCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCCCCcccccccCCCCCHHHHHHHHccCc
Q 004839 569 KEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSP 648 (728)
Q Consensus 569 ~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sP 648 (728)
+.-+|++|+.+.|+|.|+.+++.++.++|++|+++|+..|+.-... . +
T Consensus 93 ~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~--------------------~------------~ 140 (207)
T COG0400 93 EYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEP--------------------E------------L 140 (207)
T ss_pred HhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCC--------------------c------------c
Confidence 7778999999999999999999999999999999999888432110 0 0
Q ss_pred ccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEE-EcCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 004839 649 YDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL-NLTTDIVEENRYLQCKESALETAFLIKMM 726 (728)
Q Consensus 649 ~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~-~~~~gH~~~~~~~~~~~~~~~~afl~~~l 726 (728)
..+ ...+|++++||..|++||..++.++.+.|+..|. .+.+ ..+.||.... ++......|+.+.+
T Consensus 141 ~~~---~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~-----~v~~~~~~~GH~i~~-----e~~~~~~~wl~~~~ 206 (207)
T COG0400 141 LPD---LAGTPILLSHGTEDPVVPLALAEALAEYLTASGA-----DVEVRWHEGGHEIPP-----EELEAARSWLANTL 206 (207)
T ss_pred ccc---cCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCC-----CEEEEEecCCCcCCH-----HHHHHHHHHHHhcc
Confidence 001 2467999999999999999999999999999885 3444 3349997633 22233456887654
No 110
>KOG3101 consensus Esterase D [General function prediction only]
Probab=99.17 E-value=3.1e-10 Score=105.32 Aligned_cols=209 Identities=14% Similarity=0.155 Sum_probs=123.0
Q ss_pred cEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccH--HHH-HHHHHCCeEEEEEc--CCCCCC----------CCCc
Q 004839 478 ISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR--SEL-KSLLDRGWVVAFAD--VRGGGG----------GGKK 542 (728)
Q Consensus 478 ~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~--~~~-~~l~~~Gy~v~~~d--~RG~g~----------~G~~ 542 (728)
..+...++.|+++..+++.|+|.+.-|-.... ..|. ... +....+|.+|+.|| +||-.- .|..
T Consensus 26 c~Mtf~vylPp~a~~~k~~P~lf~LSGLTCT~--~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GAG 103 (283)
T KOG3101|consen 26 CSMTFGVYLPPDAPRGKRCPVLFYLSGLTCTH--ENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGAG 103 (283)
T ss_pred cceEEEEecCCCcccCCcCceEEEecCCcccc--hhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCce
Confidence 34555688898887788899999999853322 2332 223 44445899999999 566431 2223
Q ss_pred cccccccC-CCC--CcHHHHHHHHHHHHHc--CCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhcc
Q 004839 543 WHHDGRRT-KKL--NSIKDFISCARFLIEK--EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLL 617 (728)
Q Consensus 543 ~~~~~~~~-~~~--~~~~D~~~~~~~l~~~--~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~ 617 (728)
|+-....+ |.. .+++=+..-+-.++.. -.+|+.+++|+||||||+-++.+..+.|.+|+.+.+.+|+.+..+
T Consensus 104 FYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~--- 180 (283)
T KOG3101|consen 104 FYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPIN--- 180 (283)
T ss_pred eEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCccc---
Confidence 33221111 211 2333333333333332 346999999999999999999999999999999999999988653
Q ss_pred CCCCCCCccccccc-CCCCCHHHHHHHHccCcccccccCCCCC--eEEEEcCCCCCCCHHH--HHHHHHHHHhCCCCCCC
Q 004839 618 YPILPLIAADYEEF-GYPGDIDDFHAIRNYSPYDNIQKDVLYP--AVLVTSSFNTRFGVWE--AAKWVARVRESTIYDPK 692 (728)
Q Consensus 618 ~~~~~~~~~~~~~~-g~p~~~~~~~~~~~~sP~~~i~~~~~~P--~lli~g~~D~~Vp~~~--~~~~~~~L~~~~~~~~~ 692 (728)
.|++...+.-| |+ +...+.+|++.+-+++ ...+ .+||+.+.++..-..| ++.+.++.+....
T Consensus 181 ---cpWGqKAf~gYLG~-----~ka~W~~yDat~lik~-y~~~~~~ilIdqG~~D~Fl~~qLlPe~l~~a~~~~~~---- 247 (283)
T KOG3101|consen 181 ---CPWGQKAFTGYLGD-----NKAQWEAYDATHLIKN-YRGVGDDILIDQGAADNFLAEQLLPENLLEACKATWQ---- 247 (283)
T ss_pred ---CcchHHHhhcccCC-----ChHHHhhcchHHHHHh-cCCCCccEEEecCccchhhhhhcChHHHHHHhhcccc----
Confidence 34443333322 33 2234555566544432 2111 2555555443333333 5667777765432
Q ss_pred ccEEE--EcCCCCC
Q 004839 693 RPILL--NLTTDIV 704 (728)
Q Consensus 693 ~~~~~--~~~~gH~ 704 (728)
.++++ -++-.|.
T Consensus 248 ~~v~~r~~~gyDHS 261 (283)
T KOG3101|consen 248 APVVFRLQEGYDHS 261 (283)
T ss_pred ccEEEEeecCCCcc
Confidence 46666 4455575
No 111
>PRK07581 hypothetical protein; Validated
Probab=99.16 E-value=3.6e-10 Score=121.07 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=68.2
Q ss_pred CccEEEEEcCCCCCCcCcccHHHH---HHHHHCCeEEEEEcCCCCCCCCCcccccccc---CCCCCcH-HHHHHHHHHHH
Q 004839 495 QNPGLLHGHGAYGELLDKRWRSEL---KSLLDRGWVVAFADVRGGGGGGKKWHHDGRR---TKKLNSI-KDFISCARFLI 567 (728)
Q Consensus 495 ~~P~vv~~hGg~~~~~~~~~~~~~---~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~---~~~~~~~-~D~~~~~~~l~ 567 (728)
+.|+||+.||..+.... +.... ..|...+|.|+++|.||+|.+.......... .....++ +|+.+....|.
T Consensus 40 ~~~~vll~~~~~~~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 117 (339)
T PRK07581 40 KDNAILYPTWYSGTHQD--NEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLT 117 (339)
T ss_pred CCCEEEEeCCCCCCccc--chhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHH
Confidence 34677776765433221 22221 3565679999999999999764332110000 0001123 44444344455
Q ss_pred H-cCCCCCCcE-EEEEeCccHHHHHHHHHhCCCceeEEEEeCCc
Q 004839 568 E-KEIVKEHKL-AGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 609 (728)
Q Consensus 568 ~-~~~~d~~ri-~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~ 609 (728)
+ .+. +++ .++|+||||++++.++.++|++++++|+.++.
T Consensus 118 ~~lgi---~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~ 158 (339)
T PRK07581 118 EKFGI---ERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGT 158 (339)
T ss_pred HHhCC---CceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecC
Confidence 4 333 674 78999999999999999999999999988653
No 112
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.16 E-value=1.6e-09 Score=117.52 Aligned_cols=113 Identities=20% Similarity=0.276 Sum_probs=75.8
Q ss_pred ccEEEEEcCCCCCCcCc-----------ccHHHH---HHHHHCCeEEEEEcCCCC-CC-CCCccccc--ccc---CCCCC
Q 004839 496 NPGLLHGHGAYGELLDK-----------RWRSEL---KSLLDRGWVVAFADVRGG-GG-GGKKWHHD--GRR---TKKLN 554 (728)
Q Consensus 496 ~P~vv~~hGg~~~~~~~-----------~~~~~~---~~l~~~Gy~v~~~d~RG~-g~-~G~~~~~~--~~~---~~~~~ 554 (728)
.|.||++||..++.... .|...+ ..|...+|.|+++|.+|+ ++ .+...... +.. .....
T Consensus 48 ~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~~ 127 (379)
T PRK00175 48 SNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPVI 127 (379)
T ss_pred CCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCcC
Confidence 58899999976644211 122222 244467999999999984 32 22221110 000 01135
Q ss_pred cHHHHHHHHHHHHHcCCCCCCc-EEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 004839 555 SIKDFISCARFLIEKEIVKEHK-LAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 610 (728)
Q Consensus 555 ~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~ 610 (728)
+++|+.+.+..++++--+ ++ +.++|+||||.+++.++.++|++++++|+.++..
T Consensus 128 ~~~~~~~~~~~~l~~l~~--~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 182 (379)
T PRK00175 128 TIRDWVRAQARLLDALGI--TRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSA 182 (379)
T ss_pred CHHHHHHHHHHHHHHhCC--CCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCc
Confidence 788888888877765333 56 4899999999999999999999999999987654
No 113
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=99.15 E-value=3.5e-11 Score=123.04 Aligned_cols=135 Identities=18% Similarity=0.179 Sum_probs=91.5
Q ss_pred CcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCccc--HHHHHHHHHCC----eEEEEEcCCCCCCCCCccccc----
Q 004839 477 GISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRW--RSELKSLLDRG----WVVAFADVRGGGGGGKKWHHD---- 546 (728)
Q Consensus 477 G~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~--~~~~~~l~~~G----y~v~~~d~RG~g~~G~~~~~~---- 546 (728)
|..+.++++.|++....+++|+|++.||. . .....+ ......+++.| .++++++.-+.......|...
T Consensus 5 g~~~~~~VylP~~y~~~~~~PvlylldG~-~-~~~~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~ 82 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDPSKPYPVLYLLDGQ-S-GWFRNGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPAGSS 82 (251)
T ss_dssp TEEEEEEEEECTTGGTTTTEEEEEEESHT-T-HHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSBCTT
T ss_pred CCeEEEEEEECCCCCCCCCCEEEEEccCC-c-cccccchHHHHHHHHHHhCCCCceEEEEEecccccccccccccccccc
Confidence 66788899999998778899999999995 1 111111 12233445554 555666655554333444421
Q ss_pred --cccCCCCCcHHHHH--HHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccch
Q 004839 547 --GRRTKKLNSIKDFI--SCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDAT 613 (728)
Q Consensus 547 --~~~~~~~~~~~D~~--~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~ 613 (728)
.....+...+.+++ +.+.++.++--+++++.+|+|+||||+.++.++.++|++|.++++.+|.++..
T Consensus 83 ~~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~ 153 (251)
T PF00756_consen 83 RRADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPS 153 (251)
T ss_dssp CBCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETT
T ss_pred cccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCcccccc
Confidence 11122223455554 45666666666777779999999999999999999999999999999987764
No 114
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.15 E-value=1.7e-09 Score=109.70 Aligned_cols=99 Identities=18% Similarity=0.202 Sum_probs=74.5
Q ss_pred cEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 004839 497 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK 576 (728)
Q Consensus 497 P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 576 (728)
|.||++||..++. ..|......| ++|.|+.+|+||+|.+... ...+++++.+.+..+++.. +.++
T Consensus 3 p~vvllHG~~~~~--~~w~~~~~~l--~~~~vi~~D~~G~G~S~~~---------~~~~~~~~~~~l~~~l~~~--~~~~ 67 (242)
T PRK11126 3 PWLVFLHGLLGSG--QDWQPVGEAL--PDYPRLYIDLPGHGGSAAI---------SVDGFADVSRLLSQTLQSY--NILP 67 (242)
T ss_pred CEEEEECCCCCCh--HHHHHHHHHc--CCCCEEEecCCCCCCCCCc---------cccCHHHHHHHHHHHHHHc--CCCC
Confidence 6799999976644 4666667766 4799999999999976321 1125666666666666543 3478
Q ss_pred EEEEEeCccHHHHHHHHHhCCC-ceeEEEEeCCcc
Q 004839 577 LAGWGYSAGGLLVAAAINCCPD-LFRAVVLEVPFL 610 (728)
Q Consensus 577 i~i~G~S~GG~~~~~~~~~~p~-~f~a~v~~~p~~ 610 (728)
+.++||||||.+++.++.++|+ +++++|+.++..
T Consensus 68 ~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~ 102 (242)
T PRK11126 68 YWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNP 102 (242)
T ss_pred eEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCC
Confidence 9999999999999999998865 499999877554
No 115
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.11 E-value=1.7e-09 Score=115.95 Aligned_cols=79 Identities=19% Similarity=0.104 Sum_probs=58.3
Q ss_pred HHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCc-EEEEEeCccHHHHHHHHHhCCC
Q 004839 520 SLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK-LAGWGYSAGGLLVAAAINCCPD 598 (728)
Q Consensus 520 ~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~~~~~~~~~~p~ 598 (728)
.|...+|.|+.+|.||+|+.-. ....++|+.+.+..+++.-. -++ +.++|+||||++++.++.++|+
T Consensus 94 ~L~~~~~~Vi~~Dl~G~g~s~~----------~~~~~~~~a~dl~~ll~~l~--l~~~~~lvG~SmGG~vA~~~A~~~P~ 161 (343)
T PRK08775 94 ALDPARFRLLAFDFIGADGSLD----------VPIDTADQADAIALLLDALG--IARLHAFVGYSYGALVGLQFASRHPA 161 (343)
T ss_pred ccCccccEEEEEeCCCCCCCCC----------CCCCHHHHHHHHHHHHHHcC--CCcceEEEEECHHHHHHHHHHHHChH
Confidence 4545689999999999875311 11245666666666665422 234 5799999999999999999999
Q ss_pred ceeEEEEeCCcc
Q 004839 599 LFRAVVLEVPFL 610 (728)
Q Consensus 599 ~f~a~v~~~p~~ 610 (728)
+++++|+.++..
T Consensus 162 ~V~~LvLi~s~~ 173 (343)
T PRK08775 162 RVRTLVVVSGAH 173 (343)
T ss_pred hhheEEEECccc
Confidence 999999988753
No 116
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=99.09 E-value=1.7e-08 Score=109.39 Aligned_cols=218 Identities=12% Similarity=-0.036 Sum_probs=125.1
Q ss_pred eEEEEEEECC-CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCC----eEEEEEcCCCCCCCC
Q 004839 466 SCEQYDVPSH-DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRG----WVVAFADVRGGGGGG 540 (728)
Q Consensus 466 ~~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~G----y~v~~~d~RG~g~~G 540 (728)
..+.+++.|. -|.+..++++.|++.. .+++|+|++.||........ .......|.++| .+|+++|........
T Consensus 179 ~~~~~~~~S~~Lg~~r~v~VY~P~~y~-~~~~PvlyllDG~~w~~~~~-~~~~ld~li~~g~i~P~ivV~id~~~~~~R~ 256 (411)
T PRK10439 179 PAKEIIWKSERLGNSRRVWIYTTGDAA-PEERPLAILLDGQFWAESMP-VWPALDSLTHRGQLPPAVYLLIDAIDTTHRS 256 (411)
T ss_pred ceEEEEEEccccCCceEEEEEECCCCC-CCCCCEEEEEECHHhhhcCC-HHHHHHHHHHcCCCCceEEEEECCCCccccc
Confidence 4455666664 4777888999998865 56799999999975433222 223345666777 446778753222111
Q ss_pred CccccccccCCCCCcHHHHH--HHHHHHHHcC--CCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhc
Q 004839 541 KKWHHDGRRTKKLNSIKDFI--SCARFLIEKE--IVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL 616 (728)
Q Consensus 541 ~~~~~~~~~~~~~~~~~D~~--~~~~~l~~~~--~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~ 616 (728)
.+ .. ....+.+++ +.+-++.++- ..|+++.+|.|.||||+.++.++.++|++|.++++.+|-+-+..
T Consensus 257 ~e---l~----~~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ww~~-- 327 (411)
T PRK10439 257 QE---LP----CNADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSFWWPH-- 327 (411)
T ss_pred cc---CC----chHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccceecCC--
Confidence 11 00 112333332 2233433331 35889999999999999999999999999999999998532110
Q ss_pred cCCCCCCCcccccccCCCCCHHHHHHHHccCcccccccCCCCCeEEEE-cCCCCCCCHHHHHHHHHHHHhCCCCCCCccE
Q 004839 617 LYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVT-SSFNTRFGVWEAAKWVARVRESTIYDPKRPI 695 (728)
Q Consensus 617 ~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sP~~~i~~~~~~P~lli~-g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~ 695 (728)
. .+. ......+.+.+.. ... ... .++|. |..|. +-+....++++.|+++|. .+
T Consensus 328 ---~----------~~~-~~~~l~~~l~~~~----~~~-~~l-r~~i~~G~~E~-~~~~~~~~l~~~L~~~G~-----~~ 381 (411)
T PRK10439 328 ---R----------GGQ-QEGVLLEQLKAGE----VSA-RGL-RIVLEAGRREP-MIMRANQALYAQLHPAGH-----SV 381 (411)
T ss_pred ---c----------cCC-chhHHHHHHHhcc----cCC-CCc-eEEEeCCCCCc-hHHHHHHHHHHHHHHCCC-----cE
Confidence 0 000 0000112222100 000 112 35554 44553 446788999999999984 45
Q ss_pred EE-EcCCCCCCCc-hhhhHHHHHHHHHHHHH
Q 004839 696 LL-NLTTDIVEEN-RYLQCKESALETAFLIK 724 (728)
Q Consensus 696 ~~-~~~~gH~~~~-~~~~~~~~~~~~afl~~ 724 (728)
.+ ...+||.... +. .+...+.||..
T Consensus 382 ~~~~~~GGHd~~~Wr~----~L~~~L~~l~~ 408 (411)
T PRK10439 382 FWRQVDGGHDALCWRG----GLIQGLIDLWQ 408 (411)
T ss_pred EEEECCCCcCHHHHHH----HHHHHHHHHhc
Confidence 55 4456895433 22 23344566543
No 117
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.04 E-value=7.1e-09 Score=111.55 Aligned_cols=122 Identities=20% Similarity=0.127 Sum_probs=86.4
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCC
Q 004839 474 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKL 553 (728)
Q Consensus 474 s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~ 553 (728)
+.+|.++.+. ..+ .+..|.||++||.+... ..|......|+ .+|.|+++|.||+|........ ....
T Consensus 111 ~~~~~~~~y~---~~G---~~~~~~ivllHG~~~~~--~~w~~~~~~L~-~~~~Via~DlpG~G~S~~p~~~----~~~~ 177 (383)
T PLN03084 111 SSDLFRWFCV---ESG---SNNNPPVLLIHGFPSQA--YSYRKVLPVLS-KNYHAIAFDWLGFGFSDKPQPG----YGFN 177 (383)
T ss_pred cCCceEEEEE---ecC---CCCCCeEEEECCCCCCH--HHHHHHHHHHh-cCCEEEEECCCCCCCCCCCccc----cccc
Confidence 4677776432 222 12347899999976533 45666666665 5899999999999965332110 0112
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 004839 554 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 610 (728)
Q Consensus 554 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~ 610 (728)
.+++++...+..++++-. .+++.++|+|+||.+++.++.++|++++++|+.+|..
T Consensus 178 ys~~~~a~~l~~~i~~l~--~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~ 232 (383)
T PLN03084 178 YTLDEYVSSLESLIDELK--SDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPL 232 (383)
T ss_pred CCHHHHHHHHHHHHHHhC--CCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCC
Confidence 467777777777775532 3579999999999999999999999999999999864
No 118
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=99.01 E-value=9.8e-09 Score=106.40 Aligned_cols=195 Identities=22% Similarity=0.236 Sum_probs=119.2
Q ss_pred HHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHH-cCCCCCCcEEEEEeCccHHHHHHHHHh
Q 004839 517 ELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIE-KEIVKEHKLAGWGYSAGGLLVAAAINC 595 (728)
Q Consensus 517 ~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~-~~~~d~~ri~i~G~S~GG~~~~~~~~~ 595 (728)
.+..|+++||+|+++||.|-|. .|.. +. .....+-|.+.+++.+.. .+.....+++++|+|.||.-+++++..
T Consensus 18 ~l~~~L~~GyaVv~pDY~Glg~---~y~~-~~--~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l 91 (290)
T PF03583_consen 18 FLAAWLARGYAVVAPDYEGLGT---PYLN-GR--SEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAEL 91 (290)
T ss_pred HHHHHHHCCCEEEecCCCCCCC---cccC-cH--hHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHH
Confidence 4578889999999999998775 3322 11 111244455555555443 244445799999999999999998744
Q ss_pred ----CCCc---eeEEEEeCCcccchhhccCCCC-CCC----------cccccc---------------------------
Q 004839 596 ----CPDL---FRAVVLEVPFLDATNTLLYPIL-PLI----------AADYEE--------------------------- 630 (728)
Q Consensus 596 ----~p~~---f~a~v~~~p~~d~~~~~~~~~~-~~~----------~~~~~~--------------------------- 630 (728)
.||+ +.++++.+|..|+..++..-.. +.. ...|.+
T Consensus 92 ~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~ 171 (290)
T PF03583_consen 92 APSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLAD 171 (290)
T ss_pred hHHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHH
Confidence 3665 7999999999988654321000 000 000000
Q ss_pred ---------c--C-----CCC-----CHHHHHHHHccCc-ccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCC
Q 004839 631 ---------F--G-----YPG-----DIDDFHAIRNYSP-YDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTI 688 (728)
Q Consensus 631 ---------~--g-----~p~-----~~~~~~~~~~~sP-~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~ 688 (728)
. + .+. ++...+.+.+.+. +.. ....+.|+++.||..|..||+....++++++.+.|.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~ 250 (290)
T PF03583_consen 172 IVAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGG-DWTPTVPVLIYQGTADEVVPPADTDALVAKWCAAGG 250 (290)
T ss_pred HHHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccC-CCCCCCCEEEEecCCCCCCChHHHHHHHHHHHHcCC
Confidence 0 0 000 0111222333222 100 112468999999999999999999999999999882
Q ss_pred CCCCccEEE--EcCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 004839 689 YDPKRPILL--NLTTDIVEENRYLQCKESALETAFLIKMM 726 (728)
Q Consensus 689 ~~~~~~~~~--~~~~gH~~~~~~~~~~~~~~~~afl~~~l 726 (728)
..|.+ ++..+|.... .......++||...|
T Consensus 251 ----a~V~~~~~~~~~H~~~~----~~~~~~a~~Wl~~rf 282 (290)
T PF03583_consen 251 ----ADVEYVRYPGGGHLGAA----FASAPDALAWLDDRF 282 (290)
T ss_pred ----CCEEEEecCCCChhhhh----hcCcHHHHHHHHHHH
Confidence 13455 6789997532 222344668888776
No 119
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=99.01 E-value=1.5e-09 Score=100.50 Aligned_cols=199 Identities=16% Similarity=0.091 Sum_probs=132.9
Q ss_pred CccEEEEEcCCCCCCcCcccH-HHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCC
Q 004839 495 QNPGLLHGHGAYGELLDKRWR-SELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK 573 (728)
Q Consensus 495 ~~P~vv~~hGg~~~~~~~~~~-~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 573 (728)
..|+++++||||....+.... .....+.++||+|+.++|--+.. ..--...+.|+...++|+.+. +-+
T Consensus 66 ~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~q----------~htL~qt~~~~~~gv~filk~-~~n 134 (270)
T KOG4627|consen 66 QAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCPQ----------VHTLEQTMTQFTHGVNFILKY-TEN 134 (270)
T ss_pred CccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCcc----------cccHHHHHHHHHHHHHHHHHh-ccc
Confidence 458999999999865544333 34567788999999998865442 111234788999999999864 334
Q ss_pred CCcEEEEEeCccHHHHHHHHHh-CCCceeEEEEeCCcccchhhccCCCCCCCcccccccCCCCCHHHHHHHHccCccccc
Q 004839 574 EHKLAGWGYSAGGLLVAAAINC-CPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNI 652 (728)
Q Consensus 574 ~~ri~i~G~S~GG~~~~~~~~~-~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sP~~~i 652 (728)
.++|.+.|||+|+++++.++++ +..++.++++.+|++++........ -...|... +.....|+....
T Consensus 135 ~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~~te~-------g~dlgLt~-----~~ae~~Scdl~~ 202 (270)
T KOG4627|consen 135 TKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELSNTES-------GNDLGLTE-----RNAESVSCDLWE 202 (270)
T ss_pred ceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHhCCcc-------ccccCccc-----chhhhcCccHHH
Confidence 5679999999999999998775 5668999999999999865321100 01122221 112344554222
Q ss_pred ccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCchhhhHHHHHHHHHHHHH
Q 004839 653 QKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIK 724 (728)
Q Consensus 653 ~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~afl~~ 724 (728)
-+.++.|.|++-+..+.---++|.+.|++.++++. +.++++.+|.-- ..+....-.....|+.+
T Consensus 203 ~~~v~~~ilVv~~~~espklieQnrdf~~q~~~a~-------~~~f~n~~hy~I-~~~~~~~~s~~~~~~~~ 266 (270)
T KOG4627|consen 203 YTDVTVWILVVAAEHESPKLIEQNRDFADQLRKAS-------FTLFKNYDHYDI-IEETAIDDSDVSRFLRN 266 (270)
T ss_pred hcCceeeeeEeeecccCcHHHHhhhhHHHHhhhcc-------eeecCCcchhhH-HHHhccccchHHHHHHH
Confidence 22378899999999996668999999999998854 223688899631 22233333445566654
No 120
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.99 E-value=8.9e-08 Score=102.91 Aligned_cols=203 Identities=13% Similarity=0.120 Sum_probs=133.5
Q ss_pred eceeeCCCCCEEEEEEEcC-----------------------------CC--cEEEEEEEECCCCceeccCc-------c
Q 004839 127 ELSEVSPDHKFLAYTMYDK-----------------------------DN--DYFTLSVRNLNSGALCSKPQ-------A 168 (728)
Q Consensus 127 ~~~~~SPDG~~lA~~~~~~-----------------------------g~--e~~~l~v~dl~tg~~~~~~~-------~ 168 (728)
..+.|||||++|||..-.. |. ....|+|+|+++++...+.. .
T Consensus 104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~ 183 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQD 183 (353)
T ss_dssp BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSS
T ss_pred cceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCc
Confidence 4567999999999975311 11 24679999999998643221 2
Q ss_pred ceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCCceeEEeeecCcceE---EEEEEc-CCCCEEEEEEcCCCceEE
Q 004839 169 VRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVY---VNIRHT-KDFHFVCVHTFSTTSSKV 244 (728)
Q Consensus 169 ~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~~lv~~~~~~~~~---~~~~~S-pDg~~l~~~~~~~~~~~l 244 (728)
.....+.|++|++.|++...++......+++.|..++....+. ++....+. ..+.+. +++..+++.+...+..+|
T Consensus 184 ~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl 262 (353)
T PF00930_consen 184 YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVL-EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL 262 (353)
T ss_dssp EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEE-EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred cCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEE-EecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence 2457899999999898888887777778999999887544433 44444332 234444 788887777777778999
Q ss_pred EEEeCCCCCCCeEEeeecCCce--EEEEeecCCEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEE
Q 004839 245 FLINAADPFSGLTLIWECEGLA--HCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVE 322 (728)
Q Consensus 245 ~~~dl~~~~~~~~~l~~~~~~~--~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~ 322 (728)
|+++.++ +.++.|+...-.+ ...++.+++.+||.++.... ....||+++++ ..+..+.|........-.
T Consensus 263 y~~~~~~--~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p----~~r~lY~v~~~---~~~~~~~LT~~~~~~~~~ 333 (353)
T PF00930_consen 263 YLYDLDG--GKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNP----GERHLYRVSLD---SGGEPKCLTCEDGDHYSA 333 (353)
T ss_dssp EEEETTS--SEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGT----TSBEEEEEETT---ETTEEEESSTTSSTTEEE
T ss_pred EEEcccc--cceeccccCceeecccceEcCCCCEEEEEecCCCC----CceEEEEEEeC---CCCCeEeccCCCCCceEE
Confidence 9999988 5577888776554 34667889999999997543 36889999875 124455554443333122
Q ss_pred EEEeeCCEEEEEEecCC
Q 004839 323 DVDFCKTHMALILREGR 339 (728)
Q Consensus 323 ~~~~~~~~lv~~~~~~g 339 (728)
.+...+++++......+
T Consensus 334 ~~Spdg~y~v~~~s~~~ 350 (353)
T PF00930_consen 334 SFSPDGKYYVDTYSGPD 350 (353)
T ss_dssp EE-TTSSEEEEEEESSS
T ss_pred EECCCCCEEEEEEcCCC
Confidence 34444566666655433
No 121
>PRK05855 short chain dehydrogenase; Validated
Probab=98.99 E-value=1.2e-08 Score=117.91 Aligned_cols=107 Identities=16% Similarity=0.186 Sum_probs=71.5
Q ss_pred ECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCC
Q 004839 473 PSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKK 552 (728)
Q Consensus 473 ~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~ 552 (728)
...||..+.+..+ + +...|.||++||..+.. ..|......| .+||.|+.+|+||+|.+... ....
T Consensus 8 ~~~~g~~l~~~~~---g---~~~~~~ivllHG~~~~~--~~w~~~~~~L-~~~~~Vi~~D~~G~G~S~~~------~~~~ 72 (582)
T PRK05855 8 VSSDGVRLAVYEW---G---DPDRPTVVLVHGYPDNH--EVWDGVAPLL-ADRFRVVAYDVRGAGRSSAP------KRTA 72 (582)
T ss_pred EeeCCEEEEEEEc---C---CCCCCeEEEEcCCCchH--HHHHHHHHHh-hcceEEEEecCCCCCCCCCC------Cccc
Confidence 4468888876543 1 12258899999986543 4466666666 67999999999999976322 1112
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHh
Q 004839 553 LNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC 595 (728)
Q Consensus 553 ~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~ 595 (728)
..+++++.+.+..+++.-.. ..++.++|||+||.+++.++.+
T Consensus 73 ~~~~~~~a~dl~~~i~~l~~-~~~~~lvGhS~Gg~~a~~~a~~ 114 (582)
T PRK05855 73 AYTLARLADDFAAVIDAVSP-DRPVHLLAHDWGSIQGWEAVTR 114 (582)
T ss_pred ccCHHHHHHHHHHHHHHhCC-CCcEEEEecChHHHHHHHHHhC
Confidence 23566666666666654211 2349999999999888877764
No 122
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.93 E-value=3.5e-08 Score=124.57 Aligned_cols=110 Identities=21% Similarity=0.188 Sum_probs=78.0
Q ss_pred CccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCC
Q 004839 495 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 574 (728)
Q Consensus 495 ~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 574 (728)
..|.||++||..++. ..|......|. .+|.|+.+|.||+|.+...-...........+++++.+.+..++++- +.
T Consensus 1370 ~~~~vVllHG~~~s~--~~w~~~~~~L~-~~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~l--~~ 1444 (1655)
T PLN02980 1370 EGSVVLFLHGFLGTG--EDWIPIMKAIS-GSARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEHI--TP 1444 (1655)
T ss_pred CCCeEEEECCCCCCH--HHHHHHHHHHh-CCCEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHHh--CC
Confidence 357899999976654 35666666664 46999999999999763211000000112235677777666666542 34
Q ss_pred CcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCc
Q 004839 575 HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 609 (728)
Q Consensus 575 ~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~ 609 (728)
+++.++|+||||.+++.++.++|++++++|+.++.
T Consensus 1445 ~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~ 1479 (1655)
T PLN02980 1445 GKVTLVGYSMGARIALYMALRFSDKIEGAVIISGS 1479 (1655)
T ss_pred CCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCC
Confidence 78999999999999999999999999999987754
No 123
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=98.91 E-value=3.5e-08 Score=93.52 Aligned_cols=170 Identities=14% Similarity=0.126 Sum_probs=115.9
Q ss_pred HHHHHHHHHCCeEEEEEcCCCCCCC--CCccccc---cccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHH
Q 004839 515 RSELKSLLDRGWVVAFADVRGGGGG--GKKWHHD---GRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLV 589 (728)
Q Consensus 515 ~~~~~~l~~~Gy~v~~~d~RG~g~~--G~~~~~~---~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~ 589 (728)
...+..++..||.|++||+=.+.-+ +..+... ..+..-...+.|+.+.++||..++ ++.+||++|.++||-.+
T Consensus 57 r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~v 134 (242)
T KOG3043|consen 57 REGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVV 134 (242)
T ss_pred HHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceEE
Confidence 3445677888999999997544211 1111110 111222356789999999999766 45899999999999999
Q ss_pred HHHHHhCCCceeEEEEeCCcccchhhccCCCCCCCcccccccCCCCCHHHHHHHHccCcccccccCCCCCeEEEEcCCCC
Q 004839 590 AAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNT 669 (728)
Q Consensus 590 ~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~ 669 (728)
..+.+..| +|.|+|+..|.. .+.++ +. +++.|+|++-++.|.
T Consensus 135 v~~~~~~~-~f~a~v~~hps~------------------------~d~~D------------~~-~vk~Pilfl~ae~D~ 176 (242)
T KOG3043|consen 135 VTLSAKDP-EFDAGVSFHPSF------------------------VDSAD------------IA-NVKAPILFLFAELDE 176 (242)
T ss_pred EEeeccch-hheeeeEecCCc------------------------CChhH------------Hh-cCCCCEEEEeecccc
Confidence 88888766 888888766621 11111 22 277899999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCc-------h---hhhHHHHHHHHHHHHHhh
Q 004839 670 RFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN-------R---YLQCKESALETAFLIKMM 726 (728)
Q Consensus 670 ~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~-------~---~~~~~~~~~~~afl~~~l 726 (728)
.||+..-.++-++|+....-. ..+..|++.+||+.. + ...-+.......||.++|
T Consensus 177 ~~p~~~v~~~ee~lk~~~~~~--~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~ 241 (242)
T KOG3043|consen 177 DVPPKDVKAWEEKLKENPAVG--SQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYL 241 (242)
T ss_pred cCCHHHHHHHHHHHhcCcccc--eeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999998765321 234448999999762 1 111223445578888776
No 124
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=98.91 E-value=3e-09 Score=120.10 Aligned_cols=130 Identities=16% Similarity=0.057 Sum_probs=91.9
Q ss_pred EEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHC-C-eEEEEEcCC-CCCCCCCccccccccCCCCCc
Q 004839 479 SVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDR-G-WVVAFADVR-GGGGGGKKWHHDGRRTKKLNS 555 (728)
Q Consensus 479 ~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~-G-y~v~~~d~R-G~g~~G~~~~~~~~~~~~~~~ 555 (728)
.+...++.|......++.|+||++|||....-..... ....|+++ + ++|+.+||| |.-++...... ...+...
T Consensus 78 cl~l~i~~p~~~~~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~---~~~~n~g 153 (493)
T cd00312 78 CLYLNVYTPKNTKPGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDI---ELPGNYG 153 (493)
T ss_pred CCeEEEEeCCCCCCCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCC---CCCcchh
Confidence 4556677887644456789999999984322111111 33455554 3 999999999 76666544322 1223345
Q ss_pred HHHHHHHHHHHHHc---CCCCCCcEEEEEeCccHHHHHHHHHh--CCCceeEEEEeCCcccc
Q 004839 556 IKDFISCARFLIEK---EIVKEHKLAGWGYSAGGLLVAAAINC--CPDLFRAVVLEVPFLDA 612 (728)
Q Consensus 556 ~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~--~p~~f~a~v~~~p~~d~ 612 (728)
+.|.+++++|+.+. --.||++|.|+|+|+||+++.+++.. .+.+|+++|+.+|....
T Consensus 154 ~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~~ 215 (493)
T cd00312 154 LKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSALS 215 (493)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCccC
Confidence 89999999999875 13699999999999999999998875 24589999999886643
No 125
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.91 E-value=1.3e-08 Score=101.01 Aligned_cols=177 Identities=19% Similarity=0.265 Sum_probs=117.3
Q ss_pred EEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHH
Q 004839 481 PLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFI 560 (728)
Q Consensus 481 ~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~ 560 (728)
+..+++|.. .+.+|+||+.||-. .....|....+.+|+.||+|+.+|...-.. .....+.+++.
T Consensus 5 ~l~v~~P~~---~g~yPVv~f~~G~~--~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~-----------~~~~~~~~~~~ 68 (259)
T PF12740_consen 5 PLLVYYPSS---AGTYPVVLFLHGFL--LINSWYSQLLEHVASHGYIVVAPDLYSIGG-----------PDDTDEVASAA 68 (259)
T ss_pred CeEEEecCC---CCCcCEEEEeCCcC--CCHHHHHHHHHHHHhCceEEEEecccccCC-----------CCcchhHHHHH
Confidence 455777865 46799999999854 222346778899999999999999654222 11234678888
Q ss_pred HHHHHHHHc---C-----CCCCCcEEEEEeCccHHHHHHHHHhC-----CCceeEEEEeCCcccchhhccCCCCCCCccc
Q 004839 561 SCARFLIEK---E-----IVKEHKLAGWGYSAGGLLVAAAINCC-----PDLFRAVVLEVPFLDATNTLLYPILPLIAAD 627 (728)
Q Consensus 561 ~~~~~l~~~---~-----~~d~~ri~i~G~S~GG~~~~~~~~~~-----p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~ 627 (728)
+.++||.+. . ..|-+||+|+|||.||-++..++..+ +.+|+|+|+..|+-.+... ..
T Consensus 69 ~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~--~~-------- 138 (259)
T PF12740_consen 69 EVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKG--SQ-------- 138 (259)
T ss_pred HHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccc--cC--------
Confidence 999998762 1 24788999999999999999888876 5689999999996532210 00
Q ss_pred ccccCCCCCHHHHHHHHccCcccccccCCCCCeEEEEcCCCC--------CCCH--HHHHHHHHHHHhCCCCCCCccEEE
Q 004839 628 YEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNT--------RFGV--WEAAKWVARVRESTIYDPKRPILL 697 (728)
Q Consensus 628 ~~~~g~p~~~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~--------~Vp~--~~~~~~~~~L~~~~~~~~~~~~~~ 697 (728)
..|. +..+.|.. . +...|+|+|-.+... .|-+ .+-.+|+++++... ..+
T Consensus 139 ----~~P~-------v~~~~p~s-~--~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~~~p~-------~~~ 197 (259)
T PF12740_consen 139 ----TEPP-------VLTYTPQS-F--DFSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDECKPPS-------WHF 197 (259)
T ss_pred ----CCCc-------cccCcccc-c--CCCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhcCCCE-------EEE
Confidence 0111 11222221 1 145788888777663 2333 33578888886422 222
Q ss_pred -EcCCCCC
Q 004839 698 -NLTTDIV 704 (728)
Q Consensus 698 -~~~~gH~ 704 (728)
-.+.||.
T Consensus 198 v~~~~GH~ 205 (259)
T PF12740_consen 198 VAKDYGHM 205 (259)
T ss_pred EeCCCCch
Confidence 6789996
No 126
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=98.89 E-value=2.3e-08 Score=107.25 Aligned_cols=113 Identities=21% Similarity=0.253 Sum_probs=65.8
Q ss_pred CCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccc------------------cCC--C
Q 004839 493 ENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGR------------------RTK--K 552 (728)
Q Consensus 493 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~------------------~~~--~ 552 (728)
.++.|+||+-||-.+.. ..|+..+..||++||+|+.++.|-+.....-...... ... .
T Consensus 97 ~~~~PvvIFSHGlgg~R--~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T PF03403_consen 97 PGKFPVVIFSHGLGGSR--TSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDP 174 (379)
T ss_dssp SS-EEEEEEE--TT--T--TTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----G
T ss_pred CCCCCEEEEeCCCCcch--hhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccc
Confidence 37799999999976643 5688999999999999999999954322111100000 000 0
Q ss_pred C-----------CcHHHHHHHHHHHHH--c------------------CCCCCCcEEEEEeCccHHHHHHHHHhCCCcee
Q 004839 553 L-----------NSIKDFISCARFLIE--K------------------EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFR 601 (728)
Q Consensus 553 ~-----------~~~~D~~~~~~~l~~--~------------------~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~ 601 (728)
. .-..|+..+++.|.+ . +-+|.++|+++|||+||..++.++.+. .+|+
T Consensus 175 ~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d-~r~~ 253 (379)
T PF03403_consen 175 EEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD-TRFK 253 (379)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--TT--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-cCcc
Confidence 0 012355566666643 1 335788999999999999999998864 7899
Q ss_pred EEEEeCC
Q 004839 602 AVVLEVP 608 (728)
Q Consensus 602 a~v~~~p 608 (728)
|+|+.-|
T Consensus 254 ~~I~LD~ 260 (379)
T PF03403_consen 254 AGILLDP 260 (379)
T ss_dssp EEEEES-
T ss_pred eEEEeCC
Confidence 9997555
No 127
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.87 E-value=2.8e-06 Score=88.73 Aligned_cols=212 Identities=13% Similarity=0.094 Sum_probs=111.5
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCcc--ceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQA--VRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~--~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
...+..|++||++|.|..+..|+ .+||++||++++++++|.. ....+..++|+++.|||.+.. ..|++++|
T Consensus 37 YF~~~~ft~dG~kllF~s~~dg~--~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-----~~l~~vdL 109 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASDFDGN--RNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-----RSLRRVDL 109 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-TTSS---EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT-----TEEEEEET
T ss_pred eecCCCcCCCCCEEEEEeccCCC--cceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC-----CeEEEEEC
Confidence 34566799999999999988775 6799999999999999872 234568999999999998632 37999999
Q ss_pred CCCCceeEEeeecCcce-EEEEEEcCCCCEEEEEEcCC-------------------CceEEEEEeCCCCCCCeEEeeec
Q 004839 203 GSTDEDALLLEESNENV-YVNIRHTKDFHFVCVHTFST-------------------TSSKVFLINAADPFSGLTLIWEC 262 (728)
Q Consensus 203 ~t~~~~~lv~~~~~~~~-~~~~~~SpDg~~l~~~~~~~-------------------~~~~l~~~dl~~~~~~~~~l~~~ 262 (728)
.|.+ .++||+.++.-- +.......|++.++-..... ..+.|+.+|+.+ ++.+.+...
T Consensus 110 ~T~e-~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t--G~~~~v~~~ 186 (386)
T PF14583_consen 110 DTLE-ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT--GERKVVFED 186 (386)
T ss_dssp TT---EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEE
T ss_pred CcCc-EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC--CceeEEEec
Confidence 9974 557887665421 12222356787765543221 126799999998 677777766
Q ss_pred CCce-EEEEeecCCEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceE--EEEEeeCCEEEEEEe-cC
Q 004839 263 EGLA-HCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVV--EDVDFCKTHMALILR-EG 338 (728)
Q Consensus 263 ~~~~-~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i--~~~~~~~~~lv~~~~-~~ 338 (728)
.... ....+|.+..++....++... ...-+|+.++.+ . +..+.+-...+...+ +.+...+..|++... .+
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~--~Vd~RiW~i~~d-g---~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~ 260 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWD--LVDQRIWTINTD-G---SNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPG 260 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TT--TSS-SEEEEETT-S------EESS---TTEEEEEEEE-TTSS-EEEEEEETT
T ss_pred CccccCcccCCCCCCEEEEeccCCcc--eeceEEEEEEcC-C---CcceeeecCCCCcccccccccCCCCEEEEEeecCC
Confidence 5532 234455555555555544321 123468888766 2 233333322222222 233444566665544 34
Q ss_pred Ce-eEEEEEecCCCC
Q 004839 339 RT-YRLCSVSLPLPA 352 (728)
Q Consensus 339 g~-~~l~~~~l~~~~ 352 (728)
+. ..|..+++.+++
T Consensus 261 ~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 261 GQDFWIAGYDPDTGE 275 (386)
T ss_dssp T--EEEEEE-TTT--
T ss_pred CCceEEEeeCCCCCC
Confidence 43 357778877653
No 128
>COG0627 Predicted esterase [General function prediction only]
Probab=98.85 E-value=4.3e-08 Score=101.51 Aligned_cols=224 Identities=17% Similarity=0.082 Sum_probs=129.7
Q ss_pred CCCccEEEEEcCCCCCC-cCcccHHHHHHHHHCCeEEEEEcC--------------CCCC-CCCCccccccccCCCCCcH
Q 004839 493 ENQNPGLLHGHGAYGEL-LDKRWRSELKSLLDRGWVVAFADV--------------RGGG-GGGKKWHHDGRRTKKLNSI 556 (728)
Q Consensus 493 ~~~~P~vv~~hGg~~~~-~~~~~~~~~~~l~~~Gy~v~~~d~--------------RG~g-~~G~~~~~~~~~~~~~~~~ 556 (728)
+++.|++++.||-.... .-..+..........|++++.+|- .|++ ++=.+|.+...... ...+
T Consensus 51 ~~~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~-~~q~ 129 (316)
T COG0627 51 GRDIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASG-PYQW 129 (316)
T ss_pred CCCCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccC-ccch
Confidence 56789999999854322 101112233444557999998742 2433 33344444332222 3456
Q ss_pred HHHHH-HHHHHH-HcCCCCC--CcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCC---CCCCCc-ccc
Q 004839 557 KDFIS-CARFLI-EKEIVKE--HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYP---ILPLIA-ADY 628 (728)
Q Consensus 557 ~D~~~-~~~~l~-~~~~~d~--~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~---~~~~~~-~~~ 628 (728)
++++. -+-.++ +...++. ++.+|.|+||||+-++.++.++|++|+.+.+.+|+++....+... ..++.. ...
T Consensus 130 ~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~~~ 209 (316)
T COG0627 130 ETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAFN 209 (316)
T ss_pred hHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCccHH
Confidence 67653 333233 3344455 389999999999999999999999999999999999877543322 111110 111
Q ss_pred cccCCCCCHHHHHHHHccCccccccc---CC---------CCCeEEE-EcCCCCCC--CHHHHHHHHHHHHhCCCCCCCc
Q 004839 629 EEFGYPGDIDDFHAIRNYSPYDNIQK---DV---------LYPAVLV-TSSFNTRF--GVWEAAKWVARVRESTIYDPKR 693 (728)
Q Consensus 629 ~~~g~p~~~~~~~~~~~~sP~~~i~~---~~---------~~P~lli-~g~~D~~V--p~~~~~~~~~~L~~~~~~~~~~ 693 (728)
..||...+ ..+.+++|..++.+ .. ..|.+++ +|..|... ....++.+.++++++|.+.
T Consensus 210 ~~~G~~~~----~~w~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~--- 282 (316)
T COG0627 210 AMLGPDSD----PAWQENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPN--- 282 (316)
T ss_pred HhcCCCcc----ccccccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCCc---
Confidence 12444322 23566777766653 11 2344555 44455222 2334889999999998541
Q ss_pred cEEEEcCCCCCCCchhhhHHHHHHHHHHHHHhhc
Q 004839 694 PILLNLTTDIVEENRYLQCKESALETAFLIKMME 727 (728)
Q Consensus 694 ~~~~~~~~gH~~~~~~~~~~~~~~~~afl~~~l~ 727 (728)
.+...++..|...- .-..++..+.|+...|+
T Consensus 283 ~~~~~~~G~Hsw~~---w~~~l~~~~~~~a~~l~ 313 (316)
T COG0627 283 GVRDQPGGDHSWYF---WASQLADHLPWLAGALG 313 (316)
T ss_pred eeeeCCCCCcCHHH---HHHHHHHHHHHHHHHhc
Confidence 22224466785322 22335667899988875
No 129
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=98.84 E-value=1.1e-07 Score=91.14 Aligned_cols=182 Identities=15% Similarity=0.038 Sum_probs=105.8
Q ss_pred EEEEEcCCCCCCcCcccHHHHHHHHHCCe--EEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004839 498 GLLHGHGAYGELLDKRWRSELKSLLDRGW--VVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 575 (728)
Q Consensus 498 ~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy--~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 575 (728)
.|+|+||--.+..........+.+++.|. .+..+|.+ ...++.++.++.++++. .++
T Consensus 1 ~ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~-------------------~~p~~a~~~l~~~i~~~--~~~ 59 (187)
T PF05728_consen 1 MILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLP-------------------PFPEEAIAQLEQLIEEL--KPE 59 (187)
T ss_pred CeEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCC-------------------cCHHHHHHHHHHHHHhC--CCC
Confidence 37999985443322223344567777764 45555544 24456666777777653 334
Q ss_pred cEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCCCCcccccccCCC--CCHHHHHHHHccCcccccc
Q 004839 576 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYP--GDIDDFHAIRNYSPYDNIQ 653 (728)
Q Consensus 576 ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~p--~~~~~~~~~~~~sP~~~i~ 653 (728)
.++++|.|+||+.+.+++.+++ +++ |+.+|.+.....+.. .+......+ ++.. .+....+.++++.... +.
T Consensus 60 ~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~-~iG~~~~~~--~~e~~~~~~~~~~~l~~l~~~~-~~ 132 (187)
T PF05728_consen 60 NVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQD-YIGEQTNPY--TGESYELTEEHIEELKALEVPY-PT 132 (187)
T ss_pred CeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHH-hhCccccCC--CCccceechHhhhhcceEeccc-cC
Confidence 4999999999999999998764 344 888998876654321 111111111 1111 1122333333322211 11
Q ss_pred cCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCchhhhHHHHHHHHHHH
Q 004839 654 KDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFL 722 (728)
Q Consensus 654 ~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~afl 722 (728)
...+.+++++..|+.+++.++.+.++.. .. ++.++++|.+..-...+ ..+.+|+
T Consensus 133 --~~~~~lvll~~~DEvLd~~~a~~~~~~~---------~~-~i~~ggdH~f~~f~~~l---~~i~~f~ 186 (187)
T PF05728_consen 133 --NPERYLVLLQTGDEVLDYREAVAKYRGC---------AQ-IIEEGGDHSFQDFEEYL---PQIIAFL 186 (187)
T ss_pred --CCccEEEEEecCCcccCHHHHHHHhcCc---------eE-EEEeCCCCCCccHHHHH---HHHHHhh
Confidence 2457899999999999997776555322 12 23678899987644443 3455665
No 130
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=98.81 E-value=1e-08 Score=108.70 Aligned_cols=128 Identities=18% Similarity=0.119 Sum_probs=87.9
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCC-CCCCcCcccHHHHHHHHHCC-eEEEEEcCCCCC-CCCCcccccc--ccCCCCC
Q 004839 480 VPLTIIYSPKYKKENQNPGLLHGHGA-YGELLDKRWRSELKSLLDRG-WVVAFADVRGGG-GGGKKWHHDG--RRTKKLN 554 (728)
Q Consensus 480 i~~~l~~p~~~~~~~~~P~vv~~hGg-~~~~~~~~~~~~~~~l~~~G-y~v~~~d~RG~g-~~G~~~~~~~--~~~~~~~ 554 (728)
+...|+.|. .+..+.|||||+||| |............+.|+++| ++|+.+|||-+- || -.+.... .......
T Consensus 80 L~LNIwaP~--~~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGf-L~~~~~~~~~~~~~n~ 156 (491)
T COG2272 80 LYLNIWAPE--VPAEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGF-LDLSSLDTEDAFASNL 156 (491)
T ss_pred eeEEeeccC--CCCCCCcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCccccccee-eehhhccccccccccc
Confidence 445566776 344568999999997 22221122234568899998 999999999543 32 1111111 1111124
Q ss_pred cHHHHHHHHHHHHHc---CCCCCCcEEEEEeCccHHHHHHHHHhCCC---ceeEEEEeCCccc
Q 004839 555 SIKDFISCARFLIEK---EIVKEHKLAGWGYSAGGLLVAAAINCCPD---LFRAVVLEVPFLD 611 (728)
Q Consensus 555 ~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~~p~---~f~a~v~~~p~~d 611 (728)
.+.|++.+++|+.++ =--||++|.|+|.|+|++.++.++.. |. +|+.+|+.+|-.-
T Consensus 157 Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 157 GLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAAS 218 (491)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCC
Confidence 689999999999765 12399999999999999999998874 65 8888888888654
No 131
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.80 E-value=1.5e-07 Score=99.03 Aligned_cols=213 Identities=18% Similarity=0.220 Sum_probs=124.4
Q ss_pred CCccEEEEEcCCCCCCcCcccHHHHHHHHHC-CeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCC
Q 004839 494 NQNPGLLHGHGAYGELLDKRWRSELKSLLDR-GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIV 572 (728)
Q Consensus 494 ~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~-Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 572 (728)
...|.||.+||.-. .-..|......|... |+.|.+.|..|+|-. .....+ ......+....+..+..+-..
T Consensus 56 ~~~~pvlllHGF~~--~~~~w~~~~~~L~~~~~~~v~aiDl~G~g~~--s~~~~~----~~y~~~~~v~~i~~~~~~~~~ 127 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGA--SSFSWRRVVPLLSKAKGLRVLAIDLPGHGYS--SPLPRG----PLYTLRELVELIRRFVKEVFV 127 (326)
T ss_pred CCCCcEEEeccccC--CcccHhhhccccccccceEEEEEecCCCCcC--CCCCCC----CceehhHHHHHHHHHHHhhcC
Confidence 34678899998433 224566666666654 799999999996631 111111 124667777777766655443
Q ss_pred CCCcEEEEEeCccHHHHHHHHHhCCCceeEEE---EeCCcccchhhc-------c-------CCCCCCC---c-ccccc-
Q 004839 573 KEHKLAGWGYSAGGLLVAAAINCCPDLFRAVV---LEVPFLDATNTL-------L-------YPILPLI---A-ADYEE- 630 (728)
Q Consensus 573 d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v---~~~p~~d~~~~~-------~-------~~~~~~~---~-~~~~~- 630 (728)
.++.++|+|+||+++..+|+.+|+.++.+| ...+........ . ....|.. . ..+.+
T Consensus 128 --~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 205 (326)
T KOG1454|consen 128 --EPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEG 205 (326)
T ss_pred --cceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeHh
Confidence 349999999999999999999999999999 444433321110 0 0000000 0 00000
Q ss_pred --------cCCCC-CHHHHHHH------------------Hc-----cCcccccccCCCCCeEEEEcCCCCCCCHHHHHH
Q 004839 631 --------FGYPG-DIDDFHAI------------------RN-----YSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAK 678 (728)
Q Consensus 631 --------~g~p~-~~~~~~~~------------------~~-----~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~ 678 (728)
+.++. ..+....+ .. ..+...+.+..++|+|+++|+.|..+|.+.+..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p~~~~~~ 285 (326)
T KOG1454|consen 206 LLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPLELAEE 285 (326)
T ss_pred hhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccCHHHHHH
Confidence 00110 00010000 00 122334555344999999999999999998888
Q ss_pred HHHHHHhCCCCCCCccEEEEcCCCCCCCc-hhhhHHHHHHHHHHHHHh
Q 004839 679 WVARVRESTIYDPKRPILLNLTTDIVEEN-RYLQCKESALETAFLIKM 725 (728)
Q Consensus 679 ~~~~L~~~~~~~~~~~~~~~~~~gH~~~~-~~~~~~~~~~~~afl~~~ 725 (728)
+.+++ .+ ..+...+++||.-.. +++.. .+.+..|+.++
T Consensus 286 ~~~~~--pn-----~~~~~I~~~gH~~h~e~Pe~~--~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 286 LKKKL--PN-----AELVEIPGAGHLPHLERPEEV--AALLRSFIARL 324 (326)
T ss_pred HHhhC--CC-----ceEEEeCCCCcccccCCHHHH--HHHHHHHHHHh
Confidence 87777 22 122226899997433 33332 44467888765
No 132
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.79 E-value=1.5e-07 Score=104.43 Aligned_cols=109 Identities=15% Similarity=0.093 Sum_probs=74.0
Q ss_pred cEEEEEcCCCCCCcCc---ccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCC
Q 004839 497 PGLLHGHGAYGELLDK---RWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK 573 (728)
Q Consensus 497 P~vv~~hGg~~~~~~~---~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 573 (728)
+-||++||......-. .-...+.+|+++||.|+++|.||.|.....+. ......+++.++++++.+. .+
T Consensus 189 ~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~------~ddY~~~~i~~al~~v~~~--~g 260 (532)
T TIGR01838 189 TPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADKT------FDDYIRDGVIAALEVVEAI--TG 260 (532)
T ss_pred CcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccCC------hhhhHHHHHHHHHHHHHHh--cC
Confidence 4467788753322111 11357899999999999999999886433211 1112335577788888753 35
Q ss_pred CCcEEEEEeCccHHHHHH----HHHhC-CCceeEEEEeCCcccch
Q 004839 574 EHKLAGWGYSAGGLLVAA----AINCC-PDLFRAVVLEVPFLDAT 613 (728)
Q Consensus 574 ~~ri~i~G~S~GG~~~~~----~~~~~-p~~f~a~v~~~p~~d~~ 613 (728)
.+++.++|+|+||.+++. ++..+ +++++++++.+..+|+.
T Consensus 261 ~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df~ 305 (532)
T TIGR01838 261 EKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDFS 305 (532)
T ss_pred CCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCCC
Confidence 678999999999998632 34444 78899999888777754
No 133
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=98.79 E-value=2.2e-07 Score=91.83 Aligned_cols=204 Identities=16% Similarity=0.139 Sum_probs=127.6
Q ss_pred EEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCcccccc
Q 004839 468 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDG 547 (728)
Q Consensus 468 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~ 547 (728)
..+.+.+.+|..+..--.|-.....+.+..+||-+||.||+. .+|......|.+.|+.|+..|++|+|.-...
T Consensus 7 ~~~k~~~~~~~~~~~~a~y~D~~~~gs~~gTVv~~hGsPGSH--~DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~----- 79 (297)
T PF06342_consen 7 KLVKFQAENGKIVTVQAVYEDSLPSGSPLGTVVAFHGSPGSH--NDFKYIRPPLDEAGIRFIGINYPGFGFTPGY----- 79 (297)
T ss_pred EEEEcccccCceEEEEEEEEecCCCCCCceeEEEecCCCCCc--cchhhhhhHHHHcCeEEEEeCCCCCCCCCCC-----
Confidence 456677888877766555544433344456899999999976 6788889999999999999999999853211
Q ss_pred ccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccch-------------h
Q 004839 548 RRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDAT-------------N 614 (728)
Q Consensus 548 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~-------------~ 614 (728)
.. ...+-.+-..-++.|+++--++ +++.++|||.|+--++.++..+| ..++++..|+-=-. .
T Consensus 80 -~~-~~~~n~er~~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~G~r~HkgIrp~~r~~~i~ 154 (297)
T PF06342_consen 80 -PD-QQYTNEERQNFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPPGLRPHKGIRPLSRMETIN 154 (297)
T ss_pred -cc-cccChHHHHHHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCCccccccCcCHHHHHHHHH
Confidence 11 1123344455566677654455 89999999999999999999886 34666666531000 0
Q ss_pred hccCCCCCCCc------ccccccCCCC--CHHHHHHHHccCc---------ccccccCCCCCeEEEEcCCCCCCCHHHHH
Q 004839 615 TLLYPILPLIA------ADYEEFGYPG--DIDDFHAIRNYSP---------YDNIQKDVLYPAVLVTSSFNTRFGVWEAA 677 (728)
Q Consensus 615 ~~~~~~~~~~~------~~~~~~g~p~--~~~~~~~~~~~sP---------~~~i~~~~~~P~lli~g~~D~~Vp~~~~~ 677 (728)
++ ...+|... ..|...|.-. ..+....++...- ++.+.+ .++|.|++.|+.|..|--+.+.
T Consensus 155 ~l-~~~lp~~~~~~i~~~~y~~iG~KV~~GeeA~na~r~m~~~df~~q~~~I~~ln~-~~ikvli~ygg~DhLIEeeI~~ 232 (297)
T PF06342_consen 155 YL-YDLLPRFIINAIMYFYYRMIGFKVSDGEEAINAMRSMQNCDFEEQKEYIDKLNK-KPIKVLIAYGGKDHLIEEEISF 232 (297)
T ss_pred HH-HHHhhHHHHHHHHHHHHHHhCeeecChHHHHHHHHHHHhcCHHHHHHHHHHhcc-CCCcEEEEEcCcchhhHHHHHH
Confidence 00 01111100 0111123221 1122333332221 123334 5689999999999888888888
Q ss_pred HHHHHHHh
Q 004839 678 KWVARVRE 685 (728)
Q Consensus 678 ~~~~~L~~ 685 (728)
++....+.
T Consensus 233 E~a~~f~~ 240 (297)
T PF06342_consen 233 EFAMKFKG 240 (297)
T ss_pred HHHHHhCC
Confidence 88777764
No 134
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.77 E-value=6.3e-07 Score=91.10 Aligned_cols=103 Identities=22% Similarity=0.253 Sum_probs=71.9
Q ss_pred cEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHH-HHHHcCCCCCC
Q 004839 497 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCAR-FLIEKEIVKEH 575 (728)
Q Consensus 497 P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~ 575 (728)
+.+|++|| +|... .-|......|++ ...|..+|..|.|.+.+.=... .....-.-+++.++ |-.++++ +
T Consensus 91 ~plVliHG-yGAg~-g~f~~Nf~~La~-~~~vyaiDllG~G~SSRP~F~~----d~~~~e~~fvesiE~WR~~~~L---~ 160 (365)
T KOG4409|consen 91 TPLVLIHG-YGAGL-GLFFRNFDDLAK-IRNVYAIDLLGFGRSSRPKFSI----DPTTAEKEFVESIEQWRKKMGL---E 160 (365)
T ss_pred CcEEEEec-cchhH-HHHHHhhhhhhh-cCceEEecccCCCCCCCCCCCC----CcccchHHHHHHHHHHHHHcCC---c
Confidence 34567776 33322 224445566766 8999999999999765442221 11223345666665 4445555 5
Q ss_pred cEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCc
Q 004839 576 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 609 (728)
Q Consensus 576 ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~ 609 (728)
++.|+|||+|||++...|.++|++++-+|+..|.
T Consensus 161 KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~ 194 (365)
T KOG4409|consen 161 KMILVGHSFGGYLAAKYALKYPERVEKLILVSPW 194 (365)
T ss_pred ceeEeeccchHHHHHHHHHhChHhhceEEEeccc
Confidence 8999999999999999999999999999998875
No 135
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=98.70 E-value=1.1e-06 Score=94.94 Aligned_cols=135 Identities=14% Similarity=0.111 Sum_probs=83.0
Q ss_pred EECCCCcEEE-EEEEEcC-CCCCCCCccEEEEEcCCCCCC-c---------CcccHH-H---HHHHHHCCeEEEEEcCCC
Q 004839 472 VPSHDGISVP-LTIIYSP-KYKKENQNPGLLHGHGAYGEL-L---------DKRWRS-E---LKSLLDRGWVVAFADVRG 535 (728)
Q Consensus 472 ~~s~dG~~i~-~~l~~p~-~~~~~~~~P~vv~~hGg~~~~-~---------~~~~~~-~---~~~l~~~Gy~v~~~d~RG 535 (728)
|+-..|..|+ +.|-|.- +.....+.++||+.|+-.+.. . .++|.. . ...|--.-|-|+++|.-|
T Consensus 30 f~l~~G~~l~~~~~~Y~t~G~ln~~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG 109 (389)
T PRK06765 30 FTTEGGRTIPDVQMGYETYGTLNRAKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLC 109 (389)
T ss_pred EEccCCCCcCCceEEEEeccccCCCCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccC
Confidence 3344565553 3333332 111223468999999844421 1 123322 1 133334579999999998
Q ss_pred CCC-----CCCcc---cccccc-----CCCCCcHHHHHHHHHHHHHcCCCCCCcEE-EEEeCccHHHHHHHHHhCCCcee
Q 004839 536 GGG-----GGKKW---HHDGRR-----TKKLNSIKDFISCARFLIEKEIVKEHKLA-GWGYSAGGLLVAAAINCCPDLFR 601 (728)
Q Consensus 536 ~g~-----~G~~~---~~~~~~-----~~~~~~~~D~~~~~~~l~~~~~~d~~ri~-i~G~S~GG~~~~~~~~~~p~~f~ 601 (728)
++. +|..- ...+.+ .....+++|+++++..++++-.+ +++. ++|+||||..++.++.++|++++
T Consensus 110 ~~~~~~p~~g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~lgi--~~~~~vvG~SmGG~ial~~a~~~P~~v~ 187 (389)
T PRK06765 110 NVQVKDPNVITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSLGI--ARLHAVMGPSMGGMQAQEWAVHYPHMVE 187 (389)
T ss_pred CCcCCCCCCCCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHcCC--CCceEEEEECHHHHHHHHHHHHChHhhh
Confidence 753 11111 111111 12236899999998888875333 5675 99999999999999999999999
Q ss_pred EEEEeCC
Q 004839 602 AVVLEVP 608 (728)
Q Consensus 602 a~v~~~p 608 (728)
.+|+.++
T Consensus 188 ~lv~ia~ 194 (389)
T PRK06765 188 RMIGVIG 194 (389)
T ss_pred eEEEEec
Confidence 9998865
No 136
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.68 E-value=4.6e-06 Score=86.51 Aligned_cols=107 Identities=15% Similarity=0.165 Sum_probs=76.4
Q ss_pred EEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEE
Q 004839 124 AYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 201 (728)
Q Consensus 124 ~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~ 201 (728)
-.+..+..|||||+++.+ +.+.+|+++|+++|....+.. .+-+..+.|+|++++|+|.- .+.--...|-++|
T Consensus 402 g~I~av~vs~dGK~~vva-----Ndr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYaf-P~gy~tq~Iklyd 475 (668)
T COG4946 402 GNIEAVKVSPDGKKVVVA-----NDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAF-PEGYYTQSIKLYD 475 (668)
T ss_pred cceEEEEEcCCCcEEEEE-----cCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEec-CcceeeeeEEEEe
Confidence 367788899999999876 235779999999998776544 45788999999999999983 3332334577778
Q ss_pred CCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCC
Q 004839 202 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFST 239 (728)
Q Consensus 202 l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~ 239 (728)
+.+++.- -+..+.... .++++.|||+||++.+.+.
T Consensus 476 m~~~Kiy-~vTT~ta~D--fsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 476 MDGGKIY-DVTTPTAYD--FSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred cCCCeEE-EecCCcccc--cCcccCCCCcEEEEEeccc
Confidence 7765411 111222111 3578999999999998764
No 137
>PRK07868 acyl-CoA synthetase; Validated
Probab=98.67 E-value=5.8e-07 Score=109.59 Aligned_cols=106 Identities=16% Similarity=0.101 Sum_probs=65.5
Q ss_pred CccEEEEEcCCCCCCcCcccH---HHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHH----HHHHHHH
Q 004839 495 QNPGLLHGHGAYGELLDKRWR---SELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFI----SCARFLI 567 (728)
Q Consensus 495 ~~P~vv~~hGg~~~~~~~~~~---~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~----~~~~~l~ 567 (728)
..|.||++||........... .....|+++||.|+++|+..++ .. ... ....+.|.+ ++++.+.
T Consensus 66 ~~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d~G~~~---~~---~~~---~~~~l~~~i~~l~~~l~~v~ 136 (994)
T PRK07868 66 VGPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVIDFGSPD---KV---EGG---MERNLADHVVALSEAIDTVK 136 (994)
T ss_pred CCCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEcCCCCC---hh---HcC---ccCCHHHHHHHHHHHHHHHH
Confidence 347889999965543222111 2368899999999999963211 11 000 113444443 3333332
Q ss_pred HcCCCCCCcEEEEEeCccHHHHHHHHHhC-CCceeEEEEeCCcccc
Q 004839 568 EKEIVKEHKLAGWGYSAGGLLVAAAINCC-PDLFRAVVLEVPFLDA 612 (728)
Q Consensus 568 ~~~~~d~~ri~i~G~S~GG~~~~~~~~~~-p~~f~a~v~~~p~~d~ 612 (728)
+.. .+++.++|+|+||.+++.+++.+ +++++.+|+.+..+|+
T Consensus 137 ~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~ 179 (994)
T PRK07868 137 DVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDT 179 (994)
T ss_pred Hhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEeccccc
Confidence 222 25799999999999998877644 5689998876666554
No 138
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=98.65 E-value=2.7e-08 Score=99.63 Aligned_cols=78 Identities=24% Similarity=0.271 Sum_probs=63.2
Q ss_pred eEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEE
Q 004839 526 WVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVL 605 (728)
Q Consensus 526 y~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~ 605 (728)
|.|+++|.||.|.+...| .........+|+.+.++.+++.-.+ +++.++|+||||.+++.++.++|++++++|+
T Consensus 1 f~vi~~d~rG~g~S~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHW----DPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSCC----GSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCCc----cCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 689999999999754210 1223345789999999999876444 4599999999999999999999999999999
Q ss_pred eCCc
Q 004839 606 EVPF 609 (728)
Q Consensus 606 ~~p~ 609 (728)
.+++
T Consensus 75 ~~~~ 78 (230)
T PF00561_consen 75 ISPP 78 (230)
T ss_dssp ESES
T ss_pred Eeee
Confidence 9985
No 139
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.59 E-value=4.8e-06 Score=81.09 Aligned_cols=146 Identities=12% Similarity=0.140 Sum_probs=94.2
Q ss_pred ceeeCCCCCEEEEEEEcC----CC---cEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeE
Q 004839 128 LSEVSPDHKFLAYTMYDK----DN---DYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIY 198 (728)
Q Consensus 128 ~~~~SPDG~~lA~~~~~~----g~---e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~ 198 (728)
.+.|+|+|++|++..+++ +. ....||.++..+.....+.. .+.+..++|+|+|+.|+.... ..+..|-
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g---~~~~~v~ 86 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYG---SMPAKVT 86 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEc---cCCcccE
Confidence 456999999999987732 11 24678888887665444333 335899999999999887643 2233677
Q ss_pred EEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCceEEEEeecCCEEE
Q 004839 199 CSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLY 278 (728)
Q Consensus 199 ~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~dg~~l~ 278 (728)
.+++... ....+. .. ..-.+.|||+|++|++........+|.+.|..+ .+..............++|||++|+
T Consensus 87 lyd~~~~--~i~~~~--~~-~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~--~~~i~~~~~~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 87 LYDVKGK--KIFSFG--TQ-PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK--KKKISTFEHSDATDVEWSPDGRYLA 159 (194)
T ss_pred EEcCccc--EeEeec--CC-CceEEEECCCCCEEEEEEccCCCcEEEEEECCC--CEEeeccccCcEEEEEEcCCCCEEE
Confidence 7777521 122222 11 223578999999999877654446788899875 2222222222334567889999888
Q ss_pred EEEcC
Q 004839 279 LFTDA 283 (728)
Q Consensus 279 ~~tn~ 283 (728)
..+..
T Consensus 160 ta~t~ 164 (194)
T PF08662_consen 160 TATTS 164 (194)
T ss_pred EEEec
Confidence 77654
No 140
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.59 E-value=1e-07 Score=108.88 Aligned_cols=129 Identities=15% Similarity=0.064 Sum_probs=81.9
Q ss_pred EEEEEEEEcCCCCCCCCccEEEEEcCCCCCC-cC-cccHHHHHHHHHCCeEEEEEcCCCCC-CCCCccccccccCCCCCc
Q 004839 479 SVPLTIIYSPKYKKENQNPGLLHGHGAYGEL-LD-KRWRSELKSLLDRGWVVAFADVRGGG-GGGKKWHHDGRRTKKLNS 555 (728)
Q Consensus 479 ~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~-~~-~~~~~~~~~l~~~Gy~v~~~d~RG~g-~~G~~~~~~~~~~~~~~~ 555 (728)
.+...|+.|.....+.+.||+|++|||--.. .. .........++.++.+|+.+|||-+- |+-..-..... .+-..
T Consensus 108 CL~LnI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~--~gN~G 185 (535)
T PF00135_consen 108 CLYLNIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLDAP--SGNYG 185 (535)
T ss_dssp --EEEEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTTSH--BSTHH
T ss_pred HHHHhhhhccccccccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccccccccccccccC--chhhh
Confidence 4666788898866555899999999973221 11 11223345567899999999999542 22110000111 13456
Q ss_pred HHHHHHHHHHHHHcC---CCCCCcEEEEEeCccHHHHHHHHHh--CCCceeEEEEeCCc
Q 004839 556 IKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINC--CPDLFRAVVLEVPF 609 (728)
Q Consensus 556 ~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~~~~~~~~--~p~~f~a~v~~~p~ 609 (728)
+.|.+.|++|+.+.- .-||++|.|+|+|+||..+..++.. ...+|+.+|+.+|.
T Consensus 186 l~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 186 LLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred hhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 899999999998751 1299999999999999999988875 13599999999983
No 141
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.58 E-value=1e-05 Score=84.04 Aligned_cols=247 Identities=13% Similarity=0.093 Sum_probs=152.9
Q ss_pred eCCC--CCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEec--CCCCcceeEEEECCCC
Q 004839 131 VSPD--HKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTD--QNKRPYQIYCSIIGST 205 (728)
Q Consensus 131 ~SPD--G~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~--~~~~~~~v~~~~l~t~ 205 (728)
.-|| |.+|.|+.. + +||..++.+|+.++++. .+.+....++|||++++|++.- +.....+||.++...+
T Consensus 44 l~PDI~GD~IiFt~~-D-----dlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~G 117 (668)
T COG4946 44 LNPDIYGDRIIFTCC-D-----DLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDG 117 (668)
T ss_pred cCCcccCcEEEEEec-h-----HHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCC
Confidence 4555 788999864 2 38999999999888876 5567789999999999997642 2334568999999888
Q ss_pred CceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCC---ceEEEEEeCCCCCCCeEEeeecCCceEEEEeecCCEEEEEEc
Q 004839 206 DEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT---SSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTD 282 (728)
Q Consensus 206 ~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~tn 282 (728)
+..++.|-. ..|---..|+|||+.|+.+..-.. -.++|.+..++. ...+|.-... .-.+-.|| .+++-.|
T Consensus 118 e~kRiTyfG--r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~--~~e~LnlGpa--thiv~~dg-~ivigRn 190 (668)
T COG4946 118 EAKRITYFG--RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGI--KTEPLNLGPA--THIVIKDG-IIVIGRN 190 (668)
T ss_pred cEEEEEEec--cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCc--eeeeccCCce--eeEEEeCC-EEEEccC
Confidence 755666542 233333579999997765543322 378999998873 2333322211 11222344 4444333
Q ss_pred CC---ccC--CCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecCCCCCCcce
Q 004839 283 AA---KEG--QEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVV 357 (728)
Q Consensus 283 ~~---~~~--~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~ 357 (728)
.- .+. +.....+|+.-... ...++.++.- +..+...-+.++++|+....+|..+|+..|++...
T Consensus 191 tydLP~WK~YkGGtrGklWis~d~----g~tFeK~vdl--~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkD----- 259 (668)
T COG4946 191 TYDLPHWKGYKGGTRGKLWISSDG----GKTFEKFVDL--DGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKD----- 259 (668)
T ss_pred cccCcccccccCCccceEEEEecC----Ccceeeeeec--CCCcCCceEEcceEEEEecccCccceEEeccCCch-----
Confidence 21 110 11123445443221 2345544432 23355556678999999999999999999997432
Q ss_pred eecccccccccCCCceeeeecCCCccCCCcEEEEEEccCCCCceEEEEECCCCeEEEEE
Q 004839 358 HLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQ 416 (728)
Q Consensus 358 ~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~~~~~l~ 416 (728)
+. +-..+-++-. .+.+.|+.+++|+-. +.+|.+|+++.+++.|.
T Consensus 260 -lr----rHTnFtdYY~-----R~~nsDGkrIvFq~~-----GdIylydP~td~lekld 303 (668)
T COG4946 260 -LR----RHTNFTDYYP-----RNANSDGKRIVFQNA-----GDIYLYDPETDSLEKLD 303 (668)
T ss_pred -hh----hcCCchhccc-----cccCCCCcEEEEecC-----CcEEEeCCCcCcceeee
Confidence 11 1112222211 234567888988644 59999999988776654
No 142
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.56 E-value=1.4e-06 Score=82.84 Aligned_cols=239 Identities=16% Similarity=0.028 Sum_probs=128.7
Q ss_pred EEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCcccccccc
Q 004839 470 YDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRR 549 (728)
Q Consensus 470 ~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~ 549 (728)
..++..||..+++..+ |.+ ++.+-.+.+-|+++... ..|...++.++++||.|+..||||.|++-..-.....-
T Consensus 8 ~~l~~~DG~~l~~~~~-pA~----~~~~g~~~va~a~Gv~~-~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~ 81 (281)
T COG4757 8 AHLPAPDGYSLPGQRF-PAD----GKASGRLVVAGATGVGQ-YFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQW 81 (281)
T ss_pred cccccCCCccCccccc-cCC----CCCCCcEEecccCCcch-hHhHHHHHHhhccCceEEEEecccccCCCccccccCcc
Confidence 5688899999998654 443 23343455566666331 23455677888899999999999999753321110000
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccC-CC--------
Q 004839 550 TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLY-PI-------- 620 (728)
Q Consensus 550 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~-~~-------- 620 (728)
....-...|+.++++++.+.- ..-.+..+|||+||.+...+.. ++..-.++|..++.. +...|.. ..
T Consensus 82 ~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~~-~~k~~a~~vfG~gag-wsg~m~~~~~l~~~~l~~ 157 (281)
T COG4757 82 RYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLGQ-HPKYAAFAVFGSGAG-WSGWMGLRERLGAVLLWN 157 (281)
T ss_pred chhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeeccccc-CcccceeeEeccccc-cccchhhhhcccceeecc
Confidence 111123568888999988632 2246889999999998776655 563223333322211 1111100 00
Q ss_pred --C-CCCc----ccccccCCCCC--HHHHHHHHccC---------ccc----ccccCCCCCeEEEEcCCCCCCCHHHHHH
Q 004839 621 --L-PLIA----ADYEEFGYPGD--IDDFHAIRNYS---------PYD----NIQKDVLYPAVLVTSSFNTRFGVWEAAK 678 (728)
Q Consensus 621 --~-~~~~----~~~~~~g~p~~--~~~~~~~~~~s---------P~~----~i~~~~~~P~lli~g~~D~~Vp~~~~~~ 678 (728)
. +++. ......|.+.+ ...+..+..++ |-. .+-+.+.+|++.+....|+-+|+....+
T Consensus 158 lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi~~~~~~DD~w~P~As~d~ 237 (281)
T COG4757 158 LVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPITFSRALDDPWAPPASRDA 237 (281)
T ss_pred ccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCceeeeccCCCCcCCHHHHHH
Confidence 0 0000 00011122211 11222222211 211 1112378999999999999999999999
Q ss_pred HHHHHHhCCCCCCCccEEEEcC---CCCCCCchhhhHHHHHHHHHHH
Q 004839 679 WVARVRESTIYDPKRPILLNLT---TDIVEENRYLQCKESALETAFL 722 (728)
Q Consensus 679 ~~~~L~~~~~~~~~~~~~~~~~---~gH~~~~~~~~~~~~~~~~afl 722 (728)
|....+.+..+ ...+-+. -||.+--++.....+...+.||
T Consensus 238 f~~~y~nApl~----~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 238 FASFYRNAPLE----MRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred HHHhhhcCccc----ceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 99988876532 2233222 5787543332222233345554
No 143
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.55 E-value=5.2e-07 Score=92.98 Aligned_cols=130 Identities=16% Similarity=0.127 Sum_probs=93.5
Q ss_pred EEEEEEECCC-CcEEEEEEEEcCCCCC---CCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCc
Q 004839 467 CEQYDVPSHD-GISVPLTIIYSPKYKK---ENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKK 542 (728)
Q Consensus 467 ~~~~~~~s~d-G~~i~~~l~~p~~~~~---~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~ 542 (728)
...+++.... +.+++..+++|..... ..+.|+|++.||.-.. -.+|....+.|++.||+|+.++..|+..-+..
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~--~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~ 115 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSY--VTGFAWLAEHLASYGFVVAAPDHPGSNAGGAP 115 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCCCCC--ccchhhhHHHHhhCceEEEeccCCCcccccCC
Confidence 4455555443 6688889998876431 2478999999984332 45678889999999999999999998754333
Q ss_pred cccccccC----CCCCcHHHHHHHHHHHHHc---C----CCCCCcEEEEEeCccHHHHHHHHHhCCC
Q 004839 543 WHHDGRRT----KKLNSIKDFISCARFLIEK---E----IVKEHKLAGWGYSAGGLLVAAAINCCPD 598 (728)
Q Consensus 543 ~~~~~~~~----~~~~~~~D~~~~~~~l~~~---~----~~d~~ri~i~G~S~GG~~~~~~~~~~p~ 598 (728)
=...+... ....-..|+-..+++|.+. + -.|+.||++.|||+||+.++.++.-+.+
T Consensus 116 ~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 116 AAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred hhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhcccccc
Confidence 33333211 1123456777888888766 3 4689999999999999999999876554
No 144
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=98.53 E-value=6.4e-07 Score=90.79 Aligned_cols=110 Identities=17% Similarity=0.182 Sum_probs=67.9
Q ss_pred ccEEEEEcCCCCCCc-CcccHHHHHHHHHCCeEEEEEcCCC-CCCCCCccccccccCCCCCcHHHHHHHHHHHHHcC--C
Q 004839 496 NPGLLHGHGAYGELL-DKRWRSELKSLLDRGWVVAFADVRG-GGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKE--I 571 (728)
Q Consensus 496 ~P~vv~~hGg~~~~~-~~~~~~~~~~l~~~Gy~v~~~d~RG-~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~--~ 571 (728)
.-+||++-|-...-. .+.....++.|...||.|+.+..+- .++||..-. .++.+|+.++++||.... .
T Consensus 33 ~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL--------~~D~~eI~~~v~ylr~~~~g~ 104 (303)
T PF08538_consen 33 PNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSL--------DRDVEEIAQLVEYLRSEKGGH 104 (303)
T ss_dssp SSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--H--------HHHHHHHHHHHHHHHHHS---
T ss_pred CcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchh--------hhHHHHHHHHHHHHHHhhccc
Confidence 347788877322222 2334455677767899999999986 346654322 247899999999999863 2
Q ss_pred CCCCcEEEEEeCccHHHHHHHHHhCC-----CceeEEEEeCCcccch
Q 004839 572 VKEHKLAGWGYSAGGLLVAAAINCCP-----DLFRAVVLEVPFLDAT 613 (728)
Q Consensus 572 ~d~~ri~i~G~S~GG~~~~~~~~~~p-----~~f~a~v~~~p~~d~~ 613 (728)
-..++|++||||-|.--++..+.... ..+.++|+++|+.|-.
T Consensus 105 ~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDRE 151 (303)
T PF08538_consen 105 FGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDRE 151 (303)
T ss_dssp ---S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TT
T ss_pred cCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChh
Confidence 36789999999999999999887532 5699999999999854
No 145
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.52 E-value=3.4e-07 Score=94.43 Aligned_cols=112 Identities=15% Similarity=0.104 Sum_probs=77.0
Q ss_pred CCccEEEEEcCCCCCCcCcccHH-HHHHHHH-CCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCC
Q 004839 494 NQNPGLLHGHGAYGELLDKRWRS-ELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEI 571 (728)
Q Consensus 494 ~~~P~vv~~hGg~~~~~~~~~~~-~~~~l~~-~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 571 (728)
...|++|++||..+.. ...|.. ....|++ .+|.|+++|+++++.. .+..+ .. .-...-+++...+++|.++..
T Consensus 34 ~~~p~vilIHG~~~~~-~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~--~y~~a-~~-~~~~v~~~la~~l~~L~~~~g 108 (275)
T cd00707 34 PSRPTRFIIHGWTSSG-EESWISDLRKAYLSRGDYNVIVVDWGRGANP--NYPQA-VN-NTRVVGAELAKFLDFLVDNTG 108 (275)
T ss_pred CCCCcEEEEcCCCCCC-CCcHHHHHHHHHHhcCCCEEEEEECcccccc--ChHHH-HH-hHHHHHHHHHHHHHHHHHhcC
Confidence 3458999999965543 223433 3444544 6899999999986321 11111 00 001123566777888887655
Q ss_pred CCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 004839 572 VKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 610 (728)
Q Consensus 572 ~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~ 610 (728)
.+.++|.++|||+||.+++.++.+.|++++.+++..|..
T Consensus 109 ~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~ 147 (275)
T cd00707 109 LSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAG 147 (275)
T ss_pred CChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCc
Confidence 678899999999999999999999999999999887754
No 146
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.50 E-value=4.4e-06 Score=82.93 Aligned_cols=113 Identities=20% Similarity=0.238 Sum_probs=73.1
Q ss_pred CCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCC--------------CccccccccCCC------
Q 004839 493 ENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGG--------------KKWHHDGRRTKK------ 552 (728)
Q Consensus 493 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G--------------~~~~~~~~~~~~------ 552 (728)
+.++|+||+-||--+. ..-|+...-.||++||+|+++..|-....- ..|..--.....
T Consensus 115 ~~k~PvvvFSHGLggs--Rt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~i 192 (399)
T KOG3847|consen 115 NDKYPVVVFSHGLGGS--RTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFHI 192 (399)
T ss_pred CCCccEEEEecccccc--hhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEEe
Confidence 5789999999995443 355788889999999999999999764321 112110000000
Q ss_pred CC-----cHHHHHHHHHHHHH---------------------cCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEe
Q 004839 553 LN-----SIKDFISCARFLIE---------------------KEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLE 606 (728)
Q Consensus 553 ~~-----~~~D~~~~~~~l~~---------------------~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~ 606 (728)
.| -...+..|++-|.+ ++-+|..+++|+|||.||..++...+.+ ..|+++|+.
T Consensus 193 rNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~-t~FrcaI~l 271 (399)
T KOG3847|consen 193 RNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSH-TDFRCAIAL 271 (399)
T ss_pred eCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccc-cceeeeeee
Confidence 00 12233333333322 1235778999999999999999988854 579999964
Q ss_pred CC
Q 004839 607 VP 608 (728)
Q Consensus 607 ~p 608 (728)
-+
T Consensus 272 D~ 273 (399)
T KOG3847|consen 272 DA 273 (399)
T ss_pred ee
Confidence 33
No 147
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.48 E-value=0.00027 Score=77.91 Aligned_cols=252 Identities=16% Similarity=0.086 Sum_probs=151.0
Q ss_pred eEeCCeEEEEEccCCCeeEEEEEEecCCCcccccCCCCCCCccCCCCCCCcEEEeecccccccCCceEEeeceeeCCCCC
Q 004839 57 DLHHRRLYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHK 136 (728)
Q Consensus 57 ~~~g~~~yy~~~~~g~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~ 136 (728)
+++|.++.|+.+.+|+|...++.+.... | +.+-|. +.. .....+.|++||+
T Consensus 132 Spdg~~la~~~s~~G~e~~~l~v~Dl~t--------------------g--~~l~d~--i~~-----~~~~~~~W~~d~~ 182 (414)
T PF02897_consen 132 SPDGKRLAYSLSDGGSEWYTLRVFDLET--------------------G--KFLPDG--IEN-----PKFSSVSWSDDGK 182 (414)
T ss_dssp TTTSSEEEEEEEETTSSEEEEEEEETTT--------------------T--EEEEEE--EEE-----EESEEEEECTTSS
T ss_pred CCCCCEEEEEecCCCCceEEEEEEECCC--------------------C--cCcCCc--ccc-----cccceEEEeCCCC
Confidence 4789999999999999988888776532 2 233322 111 1122378999999
Q ss_pred EEEEEEEcCCCc------EEEEEEEECCCCcee--ccCc---cce-eeeEEEecCCCEEEEEEecCCCCcceeEEEECCC
Q 004839 137 FLAYTMYDKDND------YFTLSVRNLNSGALC--SKPQ---AVR-VSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 204 (728)
Q Consensus 137 ~lA~~~~~~g~e------~~~l~v~dl~tg~~~--~~~~---~~~-~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t 204 (728)
.+.|+....... ..+|+.+.+.++... .+.. ... ...+.+|+|+++|+........ .+.+|.+++..
T Consensus 183 ~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~ 261 (414)
T PF02897_consen 183 GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDD 261 (414)
T ss_dssp EEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCC
T ss_pred EEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccc
Confidence 999997555444 688999999887533 2211 122 5578899999999887766543 57999999987
Q ss_pred C---C-ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCC-ceEEEEEeCCCCCC-CeE-EeeecCCc-eEEEEeecCCE
Q 004839 205 T---D-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT-SSKVFLINAADPFS-GLT-LIWECEGL-AHCIVEHHEGF 276 (728)
Q Consensus 205 ~---~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-~~~l~~~dl~~~~~-~~~-~l~~~~~~-~~~~~~~dg~~ 276 (728)
. . .-.++....+...+ .+... |..+++.++... ...|+.++++++.. ... .+.+.... ..-.+...+++
T Consensus 262 ~~~~~~~~~~l~~~~~~~~~-~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 338 (414)
T PF02897_consen 262 GGSPDAKPKLLSPREDGVEY-YVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDY 338 (414)
T ss_dssp TTTSS-SEEEEEESSSS-EE-EEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTE
T ss_pred cCCCcCCcEEEeCCCCceEE-EEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCE
Confidence 4 2 33344332333222 12222 666677776543 47899999988542 233 55554443 44456677888
Q ss_pred EEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEE-eecCCCceEEEEEe--eCCEEEEEEecCCe-eEEEEEecCCCC
Q 004839 277 LYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESV-FIDDQGLVVEDVDF--CKTHMALILREGRT-YRLCSVSLPLPA 352 (728)
Q Consensus 277 l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l-i~~~~~~~i~~~~~--~~~~lv~~~~~~g~-~~l~~~~l~~~~ 352 (728)
|++..+.++ ..+|..+++. ..+... ++......+.++.. ..+.+.+....--. +.++.+|+.+++
T Consensus 339 Lvl~~~~~~------~~~l~v~~~~-----~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 339 LVLSYRENG------SSRLRVYDLD-----DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEEEEETT------EEEEEEEETT------TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEEEEEECC------ccEEEEEECC-----CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 888887664 3567777664 123221 22212233444442 24677777666555 478889887654
No 148
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.47 E-value=1.3e-05 Score=90.79 Aligned_cols=160 Identities=13% Similarity=0.065 Sum_probs=98.0
Q ss_pred EeeceeeCCCCCEEEEEEEc---CCCcEEEEEEEECCCCceeccCccceeeeEEEecCCCEEEEEEecC-------CCCc
Q 004839 125 YEELSEVSPDHKFLAYTMYD---KDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQ-------NKRP 194 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~---~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~-------~~~~ 194 (728)
.+..+++||||+++||.... .++...+||+.+. +|+..+++.......+.|+|||++|+|..... ....
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~ 429 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT 429 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence 56789999999999998742 1234578999997 44445554433578899999999999885321 1123
Q ss_pred ceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEE---EeCCCCC---CCeEEeeecCCce-E
Q 004839 195 YQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFL---INAADPF---SGLTLIWECEGLA-H 267 (728)
Q Consensus 195 ~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~---~dl~~~~---~~~~~l~~~~~~~-~ 267 (728)
.++|.+++..+.... -+ +. -...+.|||||+.|++... .+||+ ...+++. ..++.+....... .
T Consensus 430 gql~~~~vd~ge~~~-~~---~g-~Issl~wSpDG~RiA~i~~----g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 430 GQLARTPVDASAVAS-RV---PG-PISELQLSRDGVRAAMIIG----GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred ceEEEEeccCchhhh-cc---CC-CcCeEEECCCCCEEEEEEC----CEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence 478877776553221 11 11 1346899999999999874 36777 5544421 1122244433321 2
Q ss_pred EEEeecCCEEEEEEcCCccCCCCCceEEEEeeCC
Q 004839 268 CIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVD 301 (728)
Q Consensus 268 ~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~ 301 (728)
...+-.++.|++.++.. +..++++.++
T Consensus 501 ~l~W~~~~~L~V~~~~~-------~~~v~~v~vD 527 (591)
T PRK13616 501 SLDWRTGDSLVVGRSDP-------EHPVWYVNLD 527 (591)
T ss_pred cceEecCCEEEEEecCC-------CCceEEEecC
Confidence 12233455677665532 2457888877
No 149
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.46 E-value=7.2e-06 Score=85.92 Aligned_cols=120 Identities=17% Similarity=0.215 Sum_probs=79.3
Q ss_pred EEEEE-cCCCCCCCCccEEEEEcCC-CCCCcCccc---HHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcH
Q 004839 482 LTIIY-SPKYKKENQNPGLLHGHGA-YGELLDKRW---RSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSI 556 (728)
Q Consensus 482 ~~l~~-p~~~~~~~~~P~vv~~hGg-~~~~~~~~~---~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~ 556 (728)
.|++. |.+..+ +.-|+|+|+||| |.-...+.. -.....+.. ..++++.||.-... ...+..-+..+
T Consensus 108 ~Wlvk~P~~~~p-k~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~-~~SILvLDYsLt~~-------~~~~~~yPtQL 178 (374)
T PF10340_consen 108 YWLVKAPNRFKP-KSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP-EVSILVLDYSLTSS-------DEHGHKYPTQL 178 (374)
T ss_pred EEEEeCCcccCC-CCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC-CCeEEEEecccccc-------ccCCCcCchHH
Confidence 46666 554333 234999999997 322222221 111233334 56999999985541 01122344678
Q ss_pred HHHHHHHHHHH-HcCCCCCCcEEEEEeCccHHHHHHHHHh--C---CCceeEEEEeCCcccch
Q 004839 557 KDFISCARFLI-EKEIVKEHKLAGWGYSAGGLLVAAAINC--C---PDLFRAVVLEVPFLDAT 613 (728)
Q Consensus 557 ~D~~~~~~~l~-~~~~~d~~ri~i~G~S~GG~~~~~~~~~--~---p~~f~a~v~~~p~~d~~ 613 (728)
.++++..++|+ +.|. ++|.+||.||||.+++.++.. + ...-+.+|+++|.+++.
T Consensus 179 ~qlv~~Y~~Lv~~~G~---~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 179 RQLVATYDYLVESEGN---KNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred HHHHHHHHHHHhccCC---CeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 99999999999 5553 689999999999999887632 2 12458999999999887
No 150
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.45 E-value=1e-06 Score=86.11 Aligned_cols=117 Identities=18% Similarity=0.142 Sum_probs=80.8
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHH-CCeEEEEEcCCCCCCCCCccc
Q 004839 466 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLD-RGWVVAFADVRGGGGGGKKWH 544 (728)
Q Consensus 466 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~-~Gy~v~~~d~RG~g~~G~~~~ 544 (728)
+.+.+.+.+.|+ ++..++..|. ....|++++.|||-.+. .+|...++.+.. .-..++++|.||+|+.--+-.
T Consensus 49 ekedv~i~~~~~-t~n~Y~t~~~----~t~gpil~l~HG~G~S~--LSfA~~a~el~s~~~~r~~a~DlRgHGeTk~~~e 121 (343)
T KOG2564|consen 49 EKEDVSIDGSDL-TFNVYLTLPS----ATEGPILLLLHGGGSSA--LSFAIFASELKSKIRCRCLALDLRGHGETKVENE 121 (343)
T ss_pred cccccccCCCcc-eEEEEEecCC----CCCccEEEEeecCcccc--hhHHHHHHHHHhhcceeEEEeeccccCccccCCh
Confidence 455667776666 5777666664 23469999999975433 567777777776 356679999999997422211
Q ss_pred cccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHh
Q 004839 545 HDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC 595 (728)
Q Consensus 545 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~ 595 (728)
.+ ........|+.+.++++... ++.+|+++||||||.++...+..
T Consensus 122 ~d---lS~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~ 166 (343)
T KOG2564|consen 122 DD---LSLETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAAS 166 (343)
T ss_pred hh---cCHHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhh
Confidence 11 12234567888888777632 45679999999999999887764
No 151
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.42 E-value=0.00027 Score=73.54 Aligned_cols=141 Identities=13% Similarity=0.052 Sum_probs=84.2
Q ss_pred eceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCC
Q 004839 127 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 205 (728)
Q Consensus 127 ~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~ 205 (728)
..+.|||||+.++.+.... ..|+++|+.+++.+.... ......+.|+|||+.||.+... ...|+.+|+.+.
T Consensus 34 ~~l~~~~dg~~l~~~~~~~----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~----~~~l~~~d~~~~ 105 (300)
T TIGR03866 34 RGITLSKDGKLLYVCASDS----DTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANED----DNLVTVIDIETR 105 (300)
T ss_pred CceEECCCCCEEEEEECCC----CeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCC----CCeEEEEECCCC
Confidence 3567999999875553222 348999999988654322 2234578999999977665322 236888898764
Q ss_pred CceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeE-EeeecCCceEEEEeecCCEEEEEEc
Q 004839 206 DEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLT-LIWECEGLAHCIVEHHEGFLYLFTD 282 (728)
Q Consensus 206 ~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~-~l~~~~~~~~~~~~~dg~~l~~~tn 282 (728)
.. ...+... ....++.++|||+++++..... +.++.+|..+. ... .+..........++++|+.|++.+.
T Consensus 106 ~~-~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~--~~~~~~d~~~~--~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 106 KV-LAEIPVG--VEPEGMAVSPDGKIVVNTSETT--NMAHFIDTKTY--EIVDNVLVDQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred eE-EeEeeCC--CCcceEEECCCCCEEEEEecCC--CeEEEEeCCCC--eEEEEEEcCCCccEEEECCCCCEEEEEcC
Confidence 31 1112111 1123578999999988765532 34566787652 222 1211222223456788887776543
No 152
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=98.42 E-value=7.2e-06 Score=87.47 Aligned_cols=143 Identities=19% Similarity=0.163 Sum_probs=105.3
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCc----ccHHHHHHHHHCCeEEEEEcCCCCC
Q 004839 462 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDK----RWRSELKSLLDRGWVVAFADVRGGG 537 (728)
Q Consensus 462 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~----~~~~~~~~l~~~Gy~v~~~d~RG~g 537 (728)
...+.+|...+.+.||. |-...-.|... ++.|+|++.||-..++... .-....-.|+++||.|-+-|.|| .
T Consensus 43 ~~gy~~E~h~V~T~DgY-iL~lhRIp~~~---~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG-n 117 (403)
T KOG2624|consen 43 KYGYPVEEHEVTTEDGY-ILTLHRIPRGK---KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG-N 117 (403)
T ss_pred HcCCceEEEEEEccCCe-EEEEeeecCCC---CCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC-c
Confidence 45688999999999998 43333344432 6789999999965443221 11234567889999999999999 6
Q ss_pred CCCCcccccccc-C-------CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCC---ceeEEEEe
Q 004839 538 GGGKKWHHDGRR-T-------KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD---LFRAVVLE 606 (728)
Q Consensus 538 ~~G~~~~~~~~~-~-------~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~---~f~a~v~~ 606 (728)
.|.++-...... . +.+-...|+-+.++++.+. +..+++..+|||.|+.....++..+|+ .++..++.
T Consensus 118 ~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~--T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aL 195 (403)
T KOG2624|consen 118 TYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEK--TGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIAL 195 (403)
T ss_pred ccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHh--ccccceEEEEEEccchhheehhcccchhhhhhheeeee
Confidence 676665443322 1 2233567899999999854 467899999999999999999888876 68888999
Q ss_pred CCccc
Q 004839 607 VPFLD 611 (728)
Q Consensus 607 ~p~~d 611 (728)
+|+.-
T Consensus 196 AP~~~ 200 (403)
T KOG2624|consen 196 APAAF 200 (403)
T ss_pred cchhh
Confidence 99773
No 153
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.41 E-value=1.2e-05 Score=88.68 Aligned_cols=88 Identities=19% Similarity=0.190 Sum_probs=64.7
Q ss_pred HHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHc--CCCCCCcEEEEEeCccHHHHHH-
Q 004839 515 RSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEK--EIVKEHKLAGWGYSAGGLLVAA- 591 (728)
Q Consensus 515 ~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--~~~d~~ri~i~G~S~GG~~~~~- 591 (728)
...+++|+++|+.|++++.|.-+... ....++|++..+...++. ..+..++|-++|+|+||.+++.
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~~-----------r~~~ldDYv~~i~~Ald~V~~~tG~~~vnl~GyC~GGtl~a~~ 305 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKAH-----------REWGLSTYVDALKEAVDAVRAITGSRDLNLLGACAGGLTCAAL 305 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChhh-----------cCCCHHHHHHHHHHHHHHHHHhcCCCCeeEEEECcchHHHHHH
Confidence 45789999999999999999765321 123456665444433331 3456689999999999999987
Q ss_pred ---HHHhCCC-ceeEEEEeCCcccch
Q 004839 592 ---AINCCPD-LFRAVVLEVPFLDAT 613 (728)
Q Consensus 592 ---~~~~~p~-~f~a~v~~~p~~d~~ 613 (728)
+++++++ +++.+++.+..+|..
T Consensus 306 ~a~~aA~~~~~~V~sltllatplDf~ 331 (560)
T TIGR01839 306 VGHLQALGQLRKVNSLTYLVSLLDST 331 (560)
T ss_pred HHHHHhcCCCCceeeEEeeecccccC
Confidence 6677785 799999888888764
No 154
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=98.37 E-value=1.3e-05 Score=76.02 Aligned_cols=159 Identities=15% Similarity=0.220 Sum_probs=92.1
Q ss_pred EEEEcCCCCCCcCcccHHHH-HHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCcE
Q 004839 499 LLHGHGAYGELLDKRWRSEL-KSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKL 577 (728)
Q Consensus 499 vv~~hGg~~~~~~~~~~~~~-~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri 577 (728)
|+++||- +++....|.... +.|... +.|-.+|. .....++.+..++..+.. +| +.+
T Consensus 1 v~IvhG~-~~s~~~HW~~wl~~~l~~~-~~V~~~~~------------------~~P~~~~W~~~l~~~i~~--~~-~~~ 57 (171)
T PF06821_consen 1 VLIVHGY-GGSPPDHWQPWLERQLENS-VRVEQPDW------------------DNPDLDEWVQALDQAIDA--ID-EPT 57 (171)
T ss_dssp EEEE--T-TSSTTTSTHHHHHHHHTTS-EEEEEC--------------------TS--HHHHHHHHHHCCHC---T-TTE
T ss_pred CEEeCCC-CCCCccHHHHHHHHhCCCC-eEEecccc------------------CCCCHHHHHHHHHHHHhh--cC-CCe
Confidence 4566753 333334465544 555555 77776664 112566666666655543 33 459
Q ss_pred EEEEeCccHHHHHHHH-HhCCCceeEEEEeCCcccchhhccCCCCCCCcccccccCCCCCHHHHHHHHccCcccccccCC
Q 004839 578 AGWGYSAGGLLVAAAI-NCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDV 656 (728)
Q Consensus 578 ~i~G~S~GG~~~~~~~-~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sP~~~i~~~~ 656 (728)
.++|||.|..+++..+ .+....++++++.+|+-.-... ...+ ....+ .+.... . .
T Consensus 58 ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~---~~~~----~~~~f---------------~~~p~~-~-l 113 (171)
T PF06821_consen 58 ILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPE---PFPP----ELDGF---------------TPLPRD-P-L 113 (171)
T ss_dssp EEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHH---CCTC----GGCCC---------------TTSHCC-H-H
T ss_pred EEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCccccc---chhh----hcccc---------------ccCccc-c-c
Confidence 9999999999999999 7778899999999997431000 0000 01111 111111 1 3
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCc-hhhhH
Q 004839 657 LYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN-RYLQC 712 (728)
Q Consensus 657 ~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~-~~~~~ 712 (728)
..|.++|.+.+|+.||+..+.+++++|.. .++..+++||+... -...+
T Consensus 114 ~~~~~viaS~nDp~vp~~~a~~~A~~l~a--------~~~~~~~~GHf~~~~G~~~~ 162 (171)
T PF06821_consen 114 PFPSIVIASDNDPYVPFERAQRLAQRLGA--------ELIILGGGGHFNAASGFGPW 162 (171)
T ss_dssp HCCEEEEEETTBSSS-HHHHHHHHHHHT---------EEEEETS-TTSSGGGTHSS-
T ss_pred CCCeEEEEcCCCCccCHHHHHHHHHHcCC--------CeEECCCCCCcccccCCCch
Confidence 45669999999999999999999999964 22336999998654 33443
No 155
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=98.36 E-value=1.1e-06 Score=81.59 Aligned_cols=209 Identities=12% Similarity=0.057 Sum_probs=115.9
Q ss_pred EEEEEcCCCCCCcCcccHHHHHHHHH-CCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 004839 498 GLLHGHGAYGELLDKRWRSELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK 576 (728)
Q Consensus 498 ~vv~~hGg~~~~~~~~~~~~~~~l~~-~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 576 (728)
.|+.+-|.-|+. ...|.+....|-. .-+.|+..|.||.|.+-..=+. ..-..-.+|..+|++-+.+. +..+
T Consensus 44 ~iLlipGalGs~-~tDf~pql~~l~k~l~~TivawDPpGYG~SrPP~Rk----f~~~ff~~Da~~avdLM~aL---k~~~ 115 (277)
T KOG2984|consen 44 YILLIPGALGSY-KTDFPPQLLSLFKPLQVTIVAWDPPGYGTSRPPERK----FEVQFFMKDAEYAVDLMEAL---KLEP 115 (277)
T ss_pred eeEecccccccc-cccCCHHHHhcCCCCceEEEEECCCCCCCCCCCccc----chHHHHHHhHHHHHHHHHHh---CCCC
Confidence 567777765543 3457666655544 2399999999998864211000 00111246666777766554 5589
Q ss_pred EEEEEeCccHHHHHHHHHhCCCceeEEEEeCCc--ccchhhccCCCCCCCcccccccCCCCC----HHH--------HHH
Q 004839 577 LAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF--LDATNTLLYPILPLIAADYEEFGYPGD----IDD--------FHA 642 (728)
Q Consensus 577 i~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~--~d~~~~~~~~~~~~~~~~~~~~g~p~~----~~~--------~~~ 642 (728)
.-|+|||-||..++.+|+++++.+...|...+- ++-...|....+.....|......|-+ ++. .+.
T Consensus 116 fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa~wvD~ 195 (277)
T KOG2984|consen 116 FSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWAAWVDV 195 (277)
T ss_pred eeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999999999877665554432 222222222222211111111111100 000 111
Q ss_pred ---HHccCc---c-cccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCch-hhhHHH
Q 004839 643 ---IRNYSP---Y-DNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENR-YLQCKE 714 (728)
Q Consensus 643 ---~~~~sP---~-~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~-~~~~~~ 714 (728)
+..+.- . .-+.+ +++|+|++||+.|+.|+-.+..-+-..+..+ .+.+.++++|.+--+ .+.+.
T Consensus 196 v~qf~~~~dG~fCr~~lp~-vkcPtli~hG~kDp~~~~~hv~fi~~~~~~a-------~~~~~peGkHn~hLrya~eFn- 266 (277)
T KOG2984|consen 196 VDQFHSFCDGRFCRLVLPQ-VKCPTLIMHGGKDPFCGDPHVCFIPVLKSLA-------KVEIHPEGKHNFHLRYAKEFN- 266 (277)
T ss_pred HHHHhhcCCCchHhhhccc-ccCCeeEeeCCcCCCCCCCCccchhhhcccc-------eEEEccCCCcceeeechHHHH-
Confidence 111111 1 12334 8999999999999999887765544433332 234478999986542 22222
Q ss_pred HHHHHHHHHH
Q 004839 715 SALETAFLIK 724 (728)
Q Consensus 715 ~~~~~afl~~ 724 (728)
....+||.+
T Consensus 267 -klv~dFl~~ 275 (277)
T KOG2984|consen 267 -KLVLDFLKS 275 (277)
T ss_pred -HHHHHHHhc
Confidence 224567754
No 156
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.36 E-value=2.5e-06 Score=85.40 Aligned_cols=136 Identities=21% Similarity=0.278 Sum_probs=96.1
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHH-HHHHHHHCCeEEEEEcCCCCCCCCCccc
Q 004839 466 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS-ELKSLLDRGWVVAFADVRGGGGGGKKWH 544 (728)
Q Consensus 466 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~-~~~~l~~~Gy~v~~~d~RG~g~~G~~~~ 544 (728)
.-++.++++.||.+|...++-..+...+...-+|+..-|.-|- |.. ....=++.||.|+-.|.+|.+|+
T Consensus 213 NG~R~kiks~dgneiDtmF~d~r~n~~~ngq~LvIC~EGNAGF-----YEvG~m~tP~~lgYsvLGwNhPGFagS----- 282 (517)
T KOG1553|consen 213 NGQRLKIKSSDGNEIDTMFLDGRPNQSGNGQDLVICFEGNAGF-----YEVGVMNTPAQLGYSVLGWNHPGFAGS----- 282 (517)
T ss_pred CCeEEEEeecCCcchhheeecCCCCCCCCCceEEEEecCCccc-----eEeeeecChHHhCceeeccCCCCcccc-----
Confidence 3467889999999999877755533222223466666663221 111 12334567999999999999875
Q ss_pred cccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchh
Q 004839 545 HDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATN 614 (728)
Q Consensus 545 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~ 614 (728)
.|.. ...++..-..+++++.+..-..-++.|.++|||-||+.++|+|..+|| ++|+|+.+.|=|++.
T Consensus 283 -TG~P-~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllp 349 (517)
T KOG1553|consen 283 -TGLP-YPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLP 349 (517)
T ss_pred -CCCC-CcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhh
Confidence 1111 123455666678888887644567899999999999999999999997 599999999888764
No 157
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.35 E-value=3.6e-06 Score=90.98 Aligned_cols=111 Identities=14% Similarity=0.048 Sum_probs=75.9
Q ss_pred CccEEEEEcCCCCCCcCcccHH-HHHHHHH--CCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCC
Q 004839 495 QNPGLLHGHGAYGELLDKRWRS-ELKSLLD--RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEI 571 (728)
Q Consensus 495 ~~P~vv~~hGg~~~~~~~~~~~-~~~~l~~--~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 571 (728)
..|++|++||.........|.. ....|.. ..|.|+++|.+|++... +..+.. .-...-+++.+.+++|.++..
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~--y~~a~~--~t~~vg~~la~lI~~L~~~~g 115 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQH--YPTSAA--YTKLVGKDVAKFVNWMQEEFN 115 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCC--Cccccc--cHHHHHHHHHHHHHHHHHhhC
Confidence 3589999999654332234544 3444543 36999999999987531 111111 111122456667777765433
Q ss_pred CCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCc
Q 004839 572 VKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 609 (728)
Q Consensus 572 ~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~ 609 (728)
.+.+++.++|||+||.+++.++.+.|+++..+++..|.
T Consensus 116 l~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPA 153 (442)
T TIGR03230 116 YPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPA 153 (442)
T ss_pred CCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCC
Confidence 57889999999999999999999899999999988874
No 158
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.34 E-value=3.8e-06 Score=81.69 Aligned_cols=133 Identities=21% Similarity=0.185 Sum_probs=94.2
Q ss_pred CCCceEEEEEEECC----CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCC
Q 004839 462 SEFYSCEQYDVPSH----DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGG 537 (728)
Q Consensus 462 ~~~~~~~~~~~~s~----dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g 537 (728)
...+.++.+.+... ---..+..++.|.. .+.+|+|++.||-.-. ...|+...+.++++||+|+.|+.-..-
T Consensus 11 ~G~~~~~~~~Vd~s~~~~~spPkpLlI~tP~~---~G~yPVilF~HG~~l~--ns~Ys~lL~HIASHGfIVVAPQl~~~~ 85 (307)
T PF07224_consen 11 TGKYKTKLFNVDTSSNSSPSPPKPLLIVTPSE---AGTYPVILFLHGFNLY--NSFYSQLLAHIASHGFIVVAPQLYTLF 85 (307)
T ss_pred cCCceeEEEeecCCCCCCCCCCCCeEEecCCc---CCCccEEEEeechhhh--hHHHHHHHHHHhhcCeEEEechhhccc
Confidence 45666777776321 12345677777754 4789999999986543 244566678999999999999975321
Q ss_pred CCCCccccccccCCCCCcHHHHHHHHHHHHHc--------CCCCCCcEEEEEeCccHHHHHHHHHhC-CC-ceeEEEEeC
Q 004839 538 GGGKKWHHDGRRTKKLNSIKDFISCARFLIEK--------EIVKEHKLAGWGYSAGGLLVAAAINCC-PD-LFRAVVLEV 607 (728)
Q Consensus 538 ~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--------~~~d~~ri~i~G~S~GG~~~~~~~~~~-p~-~f~a~v~~~ 607 (728)
. ..+..++++..++++||-+. -..+-.+++++|||.||-.+.++|..+ .+ -|.|.|..-
T Consensus 86 ~-----------p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiD 154 (307)
T PF07224_consen 86 P-----------PDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGID 154 (307)
T ss_pred C-----------CCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheeccc
Confidence 1 22445778888899998753 124778999999999999999988765 23 378888777
Q ss_pred Ccc
Q 004839 608 PFL 610 (728)
Q Consensus 608 p~~ 610 (728)
|+-
T Consensus 155 PV~ 157 (307)
T PF07224_consen 155 PVA 157 (307)
T ss_pred ccC
Confidence 754
No 159
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=98.34 E-value=4.4e-06 Score=83.73 Aligned_cols=206 Identities=15% Similarity=0.000 Sum_probs=113.9
Q ss_pred EEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHC----CeEEEEEcCCCCCCCCCcc
Q 004839 468 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDR----GWVVAFADVRGGGGGGKKW 543 (728)
Q Consensus 468 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~----Gy~v~~~d~RG~g~~G~~~ 543 (728)
+.+.+.+.=..+....+++|++..+..++|+++..||-......+- ......|+.. .-+++.+|+----.....+
T Consensus 70 ~~~~~~~~l~~~~~~vv~lppgy~~~~k~pvl~~~DG~~~~~~g~i-~~~~dsli~~g~i~pai~vgid~~d~~~R~~~~ 148 (299)
T COG2382 70 EEILYSSELLSERRRVVYLPPGYNPLEKYPVLYLQDGQDWFRSGRI-PRILDSLIAAGEIPPAILVGIDYIDVKKRREEL 148 (299)
T ss_pred hhhhhhhhhccceeEEEEeCCCCCccccccEEEEeccHHHHhcCCh-HHHHHHHHHcCCCCCceEEecCCCCHHHHHHHh
Confidence 3344433333455667889999888889999999998432222221 1233444443 5677777764211111111
Q ss_pred ccccccCCCCCcHHHHHHH-----HHHHHHcC--CCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhc
Q 004839 544 HHDGRRTKKLNSIKDFISC-----ARFLIEKE--IVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL 616 (728)
Q Consensus 544 ~~~~~~~~~~~~~~D~~~~-----~~~l~~~~--~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~ 616 (728)
+ ..+++... +=++.+.- .-++++-+++|.|+||+.+++++.++|++|..+++++|.+++.-..
T Consensus 149 ~----------~n~~~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~~~~ 218 (299)
T COG2382 149 H----------CNEAYWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWTPLD 218 (299)
T ss_pred c----------ccHHHHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccCccc
Confidence 1 11222222 12222221 1267888999999999999999999999999999999987754210
Q ss_pred cCCCCCCCcccccccCCCCCHHHHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEE
Q 004839 617 LYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPIL 696 (728)
Q Consensus 617 ~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~ 696 (728)
. ..+. +..+.+ +-.+-+.. ... .++..|+... .-.....++++.|+..+. ++.
T Consensus 219 --------~--~~~~------~~~~~l---~~~~a~~~-~~~-~~l~~g~~~~-~~~~pNr~L~~~L~~~g~-----~~~ 271 (299)
T COG2382 219 --------T--QPQG------EVAESL---KILHAIGT-DER-IVLTTGGEEG-DFLRPNRALAAQLEKKGI-----PYY 271 (299)
T ss_pred --------c--cccc------chhhhh---hhhhccCc-cce-EEeecCCccc-cccchhHHHHHHHHhcCC-----cce
Confidence 0 0011 111111 11122222 222 4444444442 334457788999999884 445
Q ss_pred E-EcCCCCCCCc-hhhh
Q 004839 697 L-NLTTDIVEEN-RYLQ 711 (728)
Q Consensus 697 ~-~~~~gH~~~~-~~~~ 711 (728)
+ ...+||-... +...
T Consensus 272 yre~~GgHdw~~Wr~~l 288 (299)
T COG2382 272 YREYPGGHDWAWWRPAL 288 (299)
T ss_pred eeecCCCCchhHhHHHH
Confidence 5 3344996544 4433
No 160
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=98.28 E-value=3.1e-05 Score=74.66 Aligned_cols=214 Identities=13% Similarity=0.159 Sum_probs=113.3
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCC
Q 004839 472 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTK 551 (728)
Q Consensus 472 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~ 551 (728)
+.-.+|.+|..|-..|+... ..++|+||..-| ++..+ ..|...+.+|+..||.|+.+|.--+=|- . +|. -
T Consensus 7 i~~~~~~~I~vwet~P~~~~-~~~~~tiliA~G-f~rrm-dh~agLA~YL~~NGFhViRyDsl~HvGl--S---sG~--I 76 (294)
T PF02273_consen 7 IRLEDGRQIRVWETRPKNNE-PKRNNTILIAPG-FARRM-DHFAGLAEYLSANGFHVIRYDSLNHVGL--S---SGD--I 76 (294)
T ss_dssp EEETTTEEEEEEEE---TTS----S-EEEEE-T-T-GGG-GGGHHHHHHHHTTT--EEEE---B----------------
T ss_pred eEcCCCCEEEEeccCCCCCC-cccCCeEEEecc-hhHHH-HHHHHHHHHHhhCCeEEEeccccccccC--C---CCC--h
Confidence 44568999999999998753 456788888886 44443 5688899999999999999997544221 0 111 1
Q ss_pred CCC----cHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhcc----CCCCCC
Q 004839 552 KLN----SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLL----YPILPL 623 (728)
Q Consensus 552 ~~~----~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~----~~~~~~ 623 (728)
... ...|+..+++||.+.|. .+++++-.|.-|-++...++. ++ ..-+|..+|++|+..+.. +..+..
T Consensus 77 ~eftms~g~~sL~~V~dwl~~~g~---~~~GLIAaSLSaRIAy~Va~~-i~-lsfLitaVGVVnlr~TLe~al~~Dyl~~ 151 (294)
T PF02273_consen 77 NEFTMSIGKASLLTVIDWLATRGI---RRIGLIAASLSARIAYEVAAD-IN-LSFLITAVGVVNLRDTLEKALGYDYLQL 151 (294)
T ss_dssp ----HHHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S---SEEEEES--S-HHHHHHHHHSS-GGGS
T ss_pred hhcchHHhHHHHHHHHHHHHhcCC---CcchhhhhhhhHHHHHHHhhc-cC-cceEEEEeeeeeHHHHHHHHhccchhhc
Confidence 112 23678889999997765 579999999999999999994 65 677888889999876531 111111
Q ss_pred Cccccc---cc-CCCCCHHHH--HHH-HccCc----ccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCC
Q 004839 624 IAADYE---EF-GYPGDIDDF--HAI-RNYSP----YDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPK 692 (728)
Q Consensus 624 ~~~~~~---~~-g~p~~~~~~--~~~-~~~sP----~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~ 692 (728)
...... .+ |.--..+.+ +.+ ..+.+ ...++. ...|.+.+++..|..|...+.+++.+.+....
T Consensus 152 ~i~~lp~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~-l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s~~----- 225 (294)
T PF02273_consen 152 PIEQLPEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKR-LSIPFIAFTANDDDWVKQSEVEELLDNINSNK----- 225 (294)
T ss_dssp -GGG--SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT---S-EEEEEETT-TTS-HHHHHHHHTT-TT-------
T ss_pred chhhCCCcccccccccchHHHHHHHHHcCCccchhHHHHHhh-CCCCEEEEEeCCCccccHHHHHHHHHhcCCCc-----
Confidence 000000 00 111111111 001 11222 344554 78999999999999999988888877776533
Q ss_pred ccEEE-EcCCCCCCCc
Q 004839 693 RPILL-NLTTDIVEEN 707 (728)
Q Consensus 693 ~~~~~-~~~~gH~~~~ 707 (728)
.. ++ .++++|-...
T Consensus 226 ~k-lysl~Gs~HdL~e 240 (294)
T PF02273_consen 226 CK-LYSLPGSSHDLGE 240 (294)
T ss_dssp EE-EEEETT-SS-TTS
T ss_pred ee-EEEecCccchhhh
Confidence 22 34 7899997543
No 161
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.27 E-value=0.0013 Score=68.98 Aligned_cols=159 Identities=10% Similarity=0.131 Sum_probs=89.8
Q ss_pred eeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cc-eeeeEEEe--cCCCEEEEEEecCC-------------
Q 004839 129 SEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AV-RVSNIAWA--KDGQALIYVVTDQN------------- 191 (728)
Q Consensus 129 ~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~-~~~~~~Ws--pDg~~l~y~~~~~~------------- 191 (728)
..+||+.+.|.|..+ +. +|+.+||+|++...+.. +. -.....|+ .|++.++.......
T Consensus 86 ~~~s~~~~~~~Yv~~--~~---~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e 160 (386)
T PF14583_consen 86 GFLSPDDRALYYVKN--GR---SLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFRE 160 (386)
T ss_dssp -EE-TTSSEEEEEET--TT---EEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHH
T ss_pred eEEecCCCeEEEEEC--CC---eEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHH
Confidence 348999999999753 22 48999999998765443 22 33346675 46777766654321
Q ss_pred ----CCcceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCC----ceEEEEEeCCCCCCCeEEeeecC
Q 004839 192 ----KRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT----SSKVFLINAADPFSGLTLIWECE 263 (728)
Q Consensus 192 ----~~~~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~----~~~l~~~dl~~~~~~~~~l~~~~ 263 (728)
.-..+|+.+++.+++ ...++++.. +...+.+||..-.++.-+.... ..+||.++.++ ...+++..+.
T Consensus 161 ~~~a~p~~~i~~idl~tG~-~~~v~~~~~--wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg--~~~~~v~~~~ 235 (386)
T PF14583_consen 161 FYEARPHCRIFTIDLKTGE-RKVVFEDTD--WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG--SNVKKVHRRM 235 (386)
T ss_dssp HHHC---EEEEEEETTT---EEEEEEESS---EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS---
T ss_pred HHhhCCCceEEEEECCCCc-eeEEEecCc--cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC--CcceeeecCC
Confidence 124689999999885 455666544 3345677886665555554432 35899999877 5567776554
Q ss_pred CceE---EEEeecCCEEEEEEcCCccCCCCCceEEEEeeCC
Q 004839 264 GLAH---CIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVD 301 (728)
Q Consensus 264 ~~~~---~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~ 301 (728)
.... -++.+||..+++..-..+. ..+.|+.++++
T Consensus 236 ~~e~~gHEfw~~DG~~i~y~~~~~~~----~~~~i~~~d~~ 272 (386)
T PF14583_consen 236 EGESVGHEFWVPDGSTIWYDSYTPGG----QDFWIAGYDPD 272 (386)
T ss_dssp TTEEEEEEEE-TTSS-EEEEEEETTT------EEEEEE-TT
T ss_pred CCcccccccccCCCCEEEEEeecCCC----CceEEEeeCCC
Confidence 4422 2567899998886653332 24778888876
No 162
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=98.27 E-value=8e-06 Score=93.80 Aligned_cols=99 Identities=20% Similarity=0.171 Sum_probs=67.6
Q ss_pred CccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCcccccc----------c---------cCCCCCc
Q 004839 495 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDG----------R---------RTKKLNS 555 (728)
Q Consensus 495 ~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~----------~---------~~~~~~~ 555 (728)
..|+|+++||..+.. ..|......|+++||.|+.+|+||+|.....-...+ . ++.-...
T Consensus 448 g~P~VVllHG~~g~~--~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~ 525 (792)
T TIGR03502 448 GWPVVIYQHGITGAK--ENALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQS 525 (792)
T ss_pred CCcEEEEeCCCCCCH--HHHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHHH
Confidence 468999999976643 457777888999999999999999997532200000 0 0111234
Q ss_pred HHHHHHHHHHHH------Hc----CCCCCCcEEEEEeCccHHHHHHHHHh
Q 004839 556 IKDFISCARFLI------EK----EIVKEHKLAGWGYSAGGLLVAAAINC 595 (728)
Q Consensus 556 ~~D~~~~~~~l~------~~----~~~d~~ri~i~G~S~GG~~~~~~~~~ 595 (728)
+.|+......+. ++ +-.+..++.++||||||.++..++..
T Consensus 526 v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 526 ILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 566666555554 11 12456899999999999999998874
No 163
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.27 E-value=0.00018 Score=64.73 Aligned_cols=143 Identities=19% Similarity=0.227 Sum_probs=83.0
Q ss_pred cEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCC--CCCCccccccccCCCCCcH-HHHHHHHHHHHHcCCCC
Q 004839 497 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGG--GGGKKWHHDGRRTKKLNSI-KDFISCARFLIEKEIVK 573 (728)
Q Consensus 497 P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g--~~G~~~~~~~~~~~~~~~~-~D~~~~~~~l~~~~~~d 573 (728)
-+||+.||.-.+...+........|+.+||.|+.+++.--- ..|. . +...+..+. ...+.++..|.+.. +
T Consensus 15 ~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~---r--kPp~~~~t~~~~~~~~~aql~~~l--~ 87 (213)
T COG3571 15 VTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGR---R--KPPPGSGTLNPEYIVAIAQLRAGL--A 87 (213)
T ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccC---C--CCcCccccCCHHHHHHHHHHHhcc--c
Confidence 36778899755444444556678999999999999975322 1110 0 011122222 33445555555443 4
Q ss_pred CCcEEEEEeCccHHHHHHHHHhCCCceeEEEE-eCCcccchhhccCCCCCCCcccccccCCCCCHHHHHHHHccCccccc
Q 004839 574 EHKLAGWGYSAGGLLVAAAINCCPDLFRAVVL-EVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNI 652 (728)
Q Consensus 574 ~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~-~~p~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sP~~~i 652 (728)
..++++-|+||||-++.+++..----+.+.++ .+||. | -|.|.... ..++
T Consensus 88 ~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfh-----------p--------pGKPe~~R----------t~HL 138 (213)
T COG3571 88 EGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFH-----------P--------PGKPEQLR----------TEHL 138 (213)
T ss_pred CCceeeccccccchHHHHHHHhhcCCcceEEEecCccC-----------C--------CCCcccch----------hhhc
Confidence 56899999999999998877532111344443 22221 1 13343211 2345
Q ss_pred ccCCCCCeEEEEcCCCCCCCHHHH
Q 004839 653 QKDVLYPAVLVTSSFNTRFGVWEA 676 (728)
Q Consensus 653 ~~~~~~P~lli~g~~D~~Vp~~~~ 676 (728)
.. +++|+||.||..|+.=.-.|.
T Consensus 139 ~g-l~tPtli~qGtrD~fGtr~~V 161 (213)
T COG3571 139 TG-LKTPTLITQGTRDEFGTRDEV 161 (213)
T ss_pred cC-CCCCeEEeecccccccCHHHH
Confidence 55 899999999999964433333
No 164
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.26 E-value=0.00087 Score=70.69 Aligned_cols=244 Identities=12% Similarity=0.073 Sum_probs=121.9
Q ss_pred eeCCCCCEEEEEEE-----cCCCcEEEEEEEECCCCceeccCc-cc--------eeeeEEEecCCCEEEEEEecCCCCcc
Q 004839 130 EVSPDHKFLAYTMY-----DKDNDYFTLSVRNLNSGALCSKPQ-AV--------RVSNIAWAKDGQALIYVVTDQNKRPY 195 (728)
Q Consensus 130 ~~SPDG~~lA~~~~-----~~g~e~~~l~v~dl~tg~~~~~~~-~~--------~~~~~~WspDg~~l~y~~~~~~~~~~ 195 (728)
.+||||+.|..... ..|.+...|-|+|+++++.+.... .. ....++.|||||+||....+. ..
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p---~~ 128 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP---SP 128 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC---CC
Confidence 39999998866543 234444569999999998765322 11 224789999999887653221 34
Q ss_pred eeEEEECCCCC-cee-------EEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCceE
Q 004839 196 QIYCSIIGSTD-EDA-------LLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAH 267 (728)
Q Consensus 196 ~v~~~~l~t~~-~~~-------lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~ 267 (728)
.|-++|+.+.+ ... .+|...+..| ...+.||+.+.+.....+....--...-. ..-.++..+.
T Consensus 129 ~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~---~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~--~~~~~v~~rP---- 199 (352)
T TIGR02658 129 AVGVVDLEGKAFVRMMDVPDCYHIFPTANDTF---FMHCRDGSLAKVGYGTKGNPKIKPTEVFH--PEDEYLINHP---- 199 (352)
T ss_pred EEEEEECCCCcEEEEEeCCCCcEEEEecCCcc---EEEeecCceEEEEecCCCceEEeeeeeec--CCccccccCC----
Confidence 67888887764 111 1121111222 23456777766665544331111000000 0001111111
Q ss_pred EEEeecCCEEEEEEcCCccCCCCCceEEEEeeCCCCCC---CCCCeEEeecC--CCc---eEEEEEee--CCEEEEEEec
Q 004839 268 CIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFP---SRTWESVFIDD--QGL---VVEDVDFC--KTHMALILRE 337 (728)
Q Consensus 268 ~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~li~~~--~~~---~i~~~~~~--~~~lv~~~~~ 337 (728)
.+.+.+++.+|+++.+ .|+.+++. ... ...|..+-... ++. .++.+... ++++|+....
T Consensus 200 -~~~~~dg~~~~vs~eG---------~V~~id~~-~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~ 268 (352)
T TIGR02658 200 -AYSNKSGRLVWPTYTG---------KIFQIDLS-SGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQ 268 (352)
T ss_pred -ceEcCCCcEEEEecCC---------eEEEEecC-CCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecC
Confidence 1244344566666652 26666643 110 12233221111 111 12224444 5788875532
Q ss_pred -------CCeeEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCccCCCcEEEEEEccCCCCceEEEEECCCC
Q 004839 338 -------GRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYG 410 (728)
Q Consensus 338 -------~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~ 410 (728)
++..++.++|..+.+ . ...++......+|. .+.|++-++|..+.. ...+..+|..++
T Consensus 269 ~~~~thk~~~~~V~ViD~~t~k-----v-----i~~i~vG~~~~~ia----vS~Dgkp~lyvtn~~--s~~VsViD~~t~ 332 (352)
T TIGR02658 269 RAKWTHKTASRFLFVVDAKTGK-----R-----LRKIELGHEIDSIN----VSQDAKPLLYALSTG--DKTLYIFDAETG 332 (352)
T ss_pred CccccccCCCCEEEEEECCCCe-----E-----EEEEeCCCceeeEE----ECCCCCeEEEEeCCC--CCcEEEEECcCC
Confidence 223589999987643 1 12334333333332 356666354544432 346888998887
Q ss_pred eE
Q 004839 411 KW 412 (728)
Q Consensus 411 ~~ 412 (728)
+.
T Consensus 333 k~ 334 (352)
T TIGR02658 333 KE 334 (352)
T ss_pred eE
Confidence 64
No 165
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.23 E-value=2.7e-05 Score=75.82 Aligned_cols=103 Identities=11% Similarity=0.046 Sum_probs=67.5
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCccceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 204 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t 204 (728)
.+..++|||+|+.+|...... ...+.++|++ ++.+..........+.|||+|+.|+..... +....|...|+.+
T Consensus 61 ~I~~~~WsP~g~~favi~g~~---~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~--n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSM---PAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFG--NLNGDLEFWDVRK 134 (194)
T ss_pred ceEEEEECcCCCEEEEEEccC---CcccEEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEcc--CCCcEEEEEECCC
Confidence 477889999999999875321 2268888987 333322223344579999999999887543 2235688888864
Q ss_pred CCceeEEeeecCcceEEEEEEcCCCCEEEEEEc
Q 004839 205 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTF 237 (728)
Q Consensus 205 ~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~ 237 (728)
.+ .+.... ......+.|||||++|+....
T Consensus 135 ~~---~i~~~~-~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 135 KK---KISTFE-HSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred CE---Eeeccc-cCcEEEEEEcCCCCEEEEEEe
Confidence 32 222111 112457899999999987654
No 166
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.22 E-value=0.00012 Score=72.60 Aligned_cols=144 Identities=20% Similarity=0.131 Sum_probs=81.0
Q ss_pred ceEEEEEEECCCC-cEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEE-EcCCC-------
Q 004839 465 YSCEQYDVPSHDG-ISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAF-ADVRG------- 535 (728)
Q Consensus 465 ~~~~~~~~~s~dG-~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~-~d~RG------- 535 (728)
+.++...+.+.++ ..-.+++..|++..++.++|||.+.-|. . ..+.-.+.....+++.=..+++ ..|+.
T Consensus 7 ~~~~~~~l~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lDGn-~-vf~~~~~~~~~~~~~~~~~~iv~iGye~~~~~~~~ 84 (264)
T COG2819 7 PHFRERDLKSANTGRKYRIFIATPKNYPKPGGYPVLYMLDGN-A-VFNALTEIMLRILADLPPPVIVGIGYETILVFDPN 84 (264)
T ss_pred ccceeEeeeecCCCcEEEEEecCCCCCCCCCCCcEEEEecch-h-hhchHHHHhhhhhhcCCCceEEEeccccccccccc
Confidence 3445555666664 5557888899988777679976665553 1 1111111112233332222221 11211
Q ss_pred --CCCCCCcc---ccccc-----cC-CCCCcHHHH-HHHHHHHHHc-CCCCCCcEEEEEeCccHHHHHHHHHhCCCceeE
Q 004839 536 --GGGGGKKW---HHDGR-----RT-KKLNSIKDF-ISCARFLIEK-EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRA 602 (728)
Q Consensus 536 --~g~~G~~~---~~~~~-----~~-~~~~~~~D~-~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a 602 (728)
...|-..- ..+.. .. .+...|.++ ...+.=++++ --+|++|.+|+|||+||.+++.++..+|+.|.+
T Consensus 85 ~r~~DyTp~~~~~~~~~~~~~~~~~gGg~~~f~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~ 164 (264)
T COG2819 85 RRAYDYTPPSANAIVASSRDGFYQFGGGGDAFREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGR 164 (264)
T ss_pred cccccCCCCCCCcccccccCCCCCCCCChHHHHHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhce
Confidence 22221100 00111 01 122234333 3455555555 457999999999999999999999999999999
Q ss_pred EEEeCCcc
Q 004839 603 VVLEVPFL 610 (728)
Q Consensus 603 ~v~~~p~~ 610 (728)
.++.+|-+
T Consensus 165 y~~~SPSl 172 (264)
T COG2819 165 YGLISPSL 172 (264)
T ss_pred eeeecchh
Confidence 99999843
No 167
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.21 E-value=6e-05 Score=77.79 Aligned_cols=124 Identities=17% Similarity=0.100 Sum_probs=78.1
Q ss_pred EEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccc-------cCCCC
Q 004839 481 PLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGR-------RTKKL 553 (728)
Q Consensus 481 ~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~-------~~~~~ 553 (728)
...++.|+.. ...+.|+.|+..|...+.........+.-|++.|++-++...+-.|..=..-..... ...+.
T Consensus 78 ~~~~~~P~~~-~~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~~g~ 156 (348)
T PF09752_consen 78 RFQLLLPKRW-DSPYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQRRSSLRNVSDLFVMGR 156 (348)
T ss_pred EEEEEECCcc-ccCCCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEecccccccChhHhhcccccchhHHHHHHh
Confidence 4446677764 234578999998853332222223335678888999999887655532111000000 00123
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCC
Q 004839 554 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVP 608 (728)
Q Consensus 554 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p 608 (728)
..+.+....+.||.++|+ .++|+.|.||||+|+..+++..|..+.++-+.++
T Consensus 157 ~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~ 208 (348)
T PF09752_consen 157 ATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSW 208 (348)
T ss_pred HHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeecc
Confidence 345566678899998876 5999999999999999999988876554444333
No 168
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.18 E-value=0.00019 Score=81.51 Aligned_cols=116 Identities=14% Similarity=0.109 Sum_probs=76.8
Q ss_pred eeceeeCCCCCEEEEEEEcC-------CCcEEEEEEEECCCCceeccCccceeeeEEEecCCCEEEEEEecCCCCcceeE
Q 004839 126 EELSEVSPDHKFLAYTMYDK-------DNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIY 198 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~~~-------g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~ 198 (728)
+..|+|||||++|+|..+.+ .+...+|+++++++|+... .....+..+.|||||++|+|+.. .+||
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~~------g~v~ 471 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMIIG------GKVY 471 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEEC------CEEE
Confidence 66789999999999986431 1233578999999887665 33557899999999999999862 3677
Q ss_pred E---EECCCCCceeE-----EeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCC
Q 004839 199 C---SIIGSTDEDAL-----LLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 252 (728)
Q Consensus 199 ~---~~l~t~~~~~l-----v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~ 252 (728)
. .+-..+. ..+ +...... -..++.|..|++ |++... .....+|.+++++.
T Consensus 472 Va~Vvr~~~G~-~~l~~~~~l~~~l~~-~~~~l~W~~~~~-L~V~~~-~~~~~v~~v~vDG~ 529 (591)
T PRK13616 472 LAVVEQTEDGQ-YALTNPREVGPGLGD-TAVSLDWRTGDS-LVVGRS-DPEHPVWYVNLDGS 529 (591)
T ss_pred EEEEEeCCCCc-eeecccEEeecccCC-ccccceEecCCE-EEEEec-CCCCceEEEecCCc
Confidence 7 3333332 222 1111111 124578999998 444433 44567999999863
No 169
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.17 E-value=0.00056 Score=71.20 Aligned_cols=194 Identities=11% Similarity=0.028 Sum_probs=104.7
Q ss_pred ceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCC
Q 004839 128 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD 206 (728)
Q Consensus 128 ~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~ 206 (728)
.+.|+|||+.++.+...+ ..|+++|+.+++.+.... ......+.|+|||+.|++...+ ...++.++..+..
T Consensus 77 ~~~~~~~g~~l~~~~~~~----~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~----~~~~~~~d~~~~~ 148 (300)
T TIGR03866 77 LFALHPNGKILYIANEDD----NLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSET----TNMAHFIDTKTYE 148 (300)
T ss_pred EEEECCCCCEEEEEcCCC----CeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecC----CCeEEEEeCCCCe
Confidence 457999999886653222 259999999876543322 2234678999999988776432 1245566776543
Q ss_pred ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCC--------ceEEEEeecCCEEE
Q 004839 207 EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG--------LAHCIVEHHEGFLY 278 (728)
Q Consensus 207 ~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~--------~~~~~~~~dg~~l~ 278 (728)
....+...... ..+.++|||++|++.... ...++++|++++. ..+.+..... .....++++++.+|
T Consensus 149 ~~~~~~~~~~~---~~~~~s~dg~~l~~~~~~--~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~ 222 (300)
T TIGR03866 149 IVDNVLVDQRP---RFAEFTADGKELWVSSEI--GGTVSVIDVATRK-VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAF 222 (300)
T ss_pred EEEEEEcCCCc---cEEEECCCCCEEEEEcCC--CCEEEEEEcCcce-eeeeeeecccccccccCCccceEECCCCCEEE
Confidence 11111111111 246789999998776442 2468889998732 1222221110 11234567888766
Q ss_pred EEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEee--CCEEEEEEecCCeeEEEEEecCCC
Q 004839 279 LFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC--KTHMALILREGRTYRLCSVSLPLP 351 (728)
Q Consensus 279 ~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~~ 351 (728)
+..... ..|...+.. . .+....+.. +..+..+.+. ++.|++....+| .|.++|+.++
T Consensus 223 ~~~~~~--------~~i~v~d~~-~---~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~--~i~v~d~~~~ 281 (300)
T TIGR03866 223 VALGPA--------NRVAVVDAK-T---YEVLDYLLV--GQRVWQLAFTPDEKYLLTTNGVSN--DVSVIDVAAL 281 (300)
T ss_pred EEcCCC--------CeEEEEECC-C---CcEEEEEEe--CCCcceEEECCCCCEEEEEcCCCC--eEEEEECCCC
Confidence 543222 235555554 1 111112221 1234444444 455554443333 5888887654
No 170
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=98.15 E-value=8.5e-06 Score=80.72 Aligned_cols=168 Identities=14% Similarity=0.120 Sum_probs=80.7
Q ss_pred CccEEEEEcCCCCCCcCcccHH----HHHHHHHCCeEEEEEcCCCCC--------------------CCCCccccccccC
Q 004839 495 QNPGLLHGHGAYGELLDKRWRS----ELKSLLDRGWVVAFADVRGGG--------------------GGGKKWHHDGRRT 550 (728)
Q Consensus 495 ~~P~vv~~hGg~~~~~~~~~~~----~~~~l~~~Gy~v~~~d~RG~g--------------------~~G~~~~~~~~~~ 550 (728)
+.|-||.+||...+. .-|.. ....|.+.++-++++|-+--- +-...|......
T Consensus 3 ~k~riLcLHG~~~na--~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~- 79 (212)
T PF03959_consen 3 RKPRILCLHGYGQNA--EIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDD- 79 (212)
T ss_dssp ---EEEEE--TT--H--HHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S--
T ss_pred CCceEEEeCCCCcCH--HHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCC-
Confidence 357899999864432 33433 234444448999988843111 122233332221
Q ss_pred CCCCcHHHHHHHHHHHHH----cCCCCCCcEEEEEeCccHHHHHHHHHhC--------CCceeEEEEeCCcccchhhccC
Q 004839 551 KKLNSIKDFISCARFLIE----KEIVKEHKLAGWGYSAGGLLVAAAINCC--------PDLFRAVVLEVPFLDATNTLLY 618 (728)
Q Consensus 551 ~~~~~~~D~~~~~~~l~~----~~~~d~~ri~i~G~S~GG~~~~~~~~~~--------p~~f~a~v~~~p~~d~~~~~~~ 618 (728)
.....++.+++++|.+ .|-. .||+|+|.||.+++.++... ...||.+|+.+|+.-....
T Consensus 80 --~~~~~~~~~sl~~l~~~i~~~GPf----dGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~--- 150 (212)
T PF03959_consen 80 --DHEYEGLDESLDYLRDYIEENGPF----DGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD--- 150 (212)
T ss_dssp --SGGG---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE----
T ss_pred --cccccCHHHHHHHHHHHHHhcCCe----EEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh---
Confidence 1234455555555443 3433 59999999999998887531 2357999988885432110
Q ss_pred CCCCCCcccccccCCCCCHHHHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEE
Q 004839 619 PILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLN 698 (728)
Q Consensus 619 ~~~~~~~~~~~~~g~p~~~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~ 698 (728)
+..+.... .+++|+|-|+|..|..+++..++++++..... ..++.
T Consensus 151 ---------------------------~~~~~~~~-~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~-------~~v~~ 195 (212)
T PF03959_consen 151 ---------------------------YQELYDEP-KISIPTLHVIGENDPVVPPERSEALAEMFDPD-------ARVIE 195 (212)
T ss_dssp ---------------------------GTTTT--T-T---EEEEEEETT-SSS-HHHHHHHHHHHHHH-------EEEEE
T ss_pred ---------------------------hhhhhccc-cCCCCeEEEEeCCCCCcchHHHHHHHHhccCC-------cEEEE
Confidence 01111112 37899999999999999999999999999862 12346
Q ss_pred cCCCCCCCchh
Q 004839 699 LTTDIVEENRY 709 (728)
Q Consensus 699 ~~~gH~~~~~~ 709 (728)
.++||......
T Consensus 196 h~gGH~vP~~~ 206 (212)
T PF03959_consen 196 HDGGHHVPRKK 206 (212)
T ss_dssp ESSSSS----H
T ss_pred ECCCCcCcCCh
Confidence 79999876533
No 171
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.12 E-value=5.4e-05 Score=78.15 Aligned_cols=204 Identities=18% Similarity=0.163 Sum_probs=120.5
Q ss_pred CCccEEEEEcCCCCCCcCccc-----HHHHHHHHHC-------CeEEEEEcCCCCC-CC-CCcccccc-c--c-CCCCCc
Q 004839 494 NQNPGLLHGHGAYGELLDKRW-----RSELKSLLDR-------GWVVAFADVRGGG-GG-GKKWHHDG-R--R-TKKLNS 555 (728)
Q Consensus 494 ~~~P~vv~~hGg~~~~~~~~~-----~~~~~~l~~~-------Gy~v~~~d~RG~g-~~-G~~~~~~~-~--~-~~~~~~ 555 (728)
.+..+||++|+-.+++..... ...++.|..- -|-|++.|.-|+. ++ |..-.... + + .....+
T Consensus 49 ~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~t 128 (368)
T COG2021 49 EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVIT 128 (368)
T ss_pred cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCccc
Confidence 346789999985442211110 0123444443 4999999999875 22 22211111 0 0 112357
Q ss_pred HHHHHHHHHHHHHcCCCCCCcE-EEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhh------------ccCCCC-
Q 004839 556 IKDFISCARFLIEKEIVKEHKL-AGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNT------------LLYPIL- 621 (728)
Q Consensus 556 ~~D~~~~~~~l~~~~~~d~~ri-~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~------------~~~~~~- 621 (728)
+.|.+.+-+.|+++--| +++ +|+|+||||+.++..+..+|++++.+|..+.-.-.... +.++.+
T Consensus 129 i~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~~~~~r~AI~~DP~~n 206 (368)
T COG2021 129 IRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAFNEVQRQAIEADPDWN 206 (368)
T ss_pred HHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHHHHHHHHHHHhCCCcc
Confidence 89999988888776434 355 49999999999999999999999888877764322210 112222
Q ss_pred ---------C---CC-------------cccccccCC-----CCC----HHHHH------------------------HH
Q 004839 622 ---------P---LI-------------AADYEEFGY-----PGD----IDDFH------------------------AI 643 (728)
Q Consensus 622 ---------~---~~-------------~~~~~~~g~-----p~~----~~~~~------------------------~~ 643 (728)
| +. ..+-..|+. |.. ....+ .+
T Consensus 207 ~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt~al 286 (368)
T COG2021 207 GGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARFDANSYLYLTRAL 286 (368)
T ss_pred CCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 1 00 000011222 000 00111 12
Q ss_pred HccCcccc-------cccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCC
Q 004839 644 RNYSPYDN-------IQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVE 705 (728)
Q Consensus 644 ~~~sP~~~-------i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~ 705 (728)
..++|-.. +.+ ++.|.|++--..|-..|+.+..+++++|+..+ ...++....||-.
T Consensus 287 d~~D~s~~~~~l~~al~~-i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~-----~~~~i~S~~GHDa 349 (368)
T COG2021 287 DYHDVSRGRGDLTAALAR-IKAPVLVVGITSDWLFPPELQRALAEALPAAG-----ALREIDSPYGHDA 349 (368)
T ss_pred HhcCCCCCcCcHHHHHhc-CccCEEEEEecccccCCHHHHHHHHHhccccC-----ceEEecCCCCchh
Confidence 22333322 343 88999999999999999999999999999877 3444466789963
No 172
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.10 E-value=0.0034 Score=67.27 Aligned_cols=262 Identities=15% Similarity=0.137 Sum_probs=130.9
Q ss_pred eeceeeCCCCCEEEEEEEcC--CCcEEEEEEEECCCCceeccCc----cceeeeEEEecCCCEEEEEEecCCCCcceeEE
Q 004839 126 EELSEVSPDHKFLAYTMYDK--DNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 199 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~~~--g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~ 199 (728)
.+.+.+|||+++| |+.+.. .......|-++.++|+...+.. ......++.+||++.||..... ...|..
T Consensus 39 Ps~l~~~~~~~~L-Y~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~----~g~v~v 113 (345)
T PF10282_consen 39 PSWLAVSPDGRRL-YVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG----GGSVSV 113 (345)
T ss_dssp ECCEEE-TTSSEE-EEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETT----TTEEEE
T ss_pred CceEEEEeCCCEE-EEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc----CCeEEE
Confidence 3456789999877 555554 2334455556666566554332 1233567889999988776433 346777
Q ss_pred EECCCCC--cee--EE-ee--e-----cCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEE---ee-ecC
Q 004839 200 SIIGSTD--EDA--LL-LE--E-----SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTL---IW-ECE 263 (728)
Q Consensus 200 ~~l~t~~--~~~--lv-~~--~-----~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~---l~-~~~ 263 (728)
+++.... ... ++ +. . ........+.++|||+++++... +...|++++++...+.+.. +. +..
T Consensus 114 ~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl--G~D~v~~~~~~~~~~~l~~~~~~~~~~G 191 (345)
T PF10282_consen 114 FPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL--GADRVYVYDIDDDTGKLTPVDSIKVPPG 191 (345)
T ss_dssp EEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET--TTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred EEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec--CCCEEEEEEEeCCCceEEEeeccccccC
Confidence 7776532 111 11 11 0 11223345789999999987654 3456888877664333322 11 222
Q ss_pred -CceEEEEeecCCEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeE---E--eecCC--CceEEEEEee--CCEEEE
Q 004839 264 -GLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWES---V--FIDDQ--GLVVEDVDFC--KTHMAL 333 (728)
Q Consensus 264 -~~~~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---l--i~~~~--~~~i~~~~~~--~~~lv~ 333 (728)
......++++++.+|++..... ...++.++.. ...++. + ++... .....++.+. +++||+
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~------~v~v~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyv 261 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSN------TVSVFDYDPS----DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYV 261 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTT------EEEEEEEETT----TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEE
T ss_pred CCCcEEEEcCCcCEEEEecCCCC------cEEEEeeccc----CCceeEEEEeeeccccccccCCceeEEEecCCCEEEE
Confidence 2234566788888887655432 2334444421 122221 1 11111 1135566666 467777
Q ss_pred EEecCCeeEEEEEecCCCCCCcceeecccccccccCCCc-eeeeecCCCccCCCcEEEEEEccCCCCceEEEEECCCCeE
Q 004839 334 ILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKY-VSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKW 412 (728)
Q Consensus 334 ~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~-~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~~~ 412 (728)
..+... .|.+++++...++ +.. ...++..+. -. ++.++++++.+++.-.. ..--.+|.+|.++|.+
T Consensus 262 snr~~~--sI~vf~~d~~~g~----l~~--~~~~~~~G~~Pr----~~~~s~~g~~l~Va~~~-s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 262 SNRGSN--SISVFDLDPATGT----LTL--VQTVPTGGKFPR----HFAFSPDGRYLYVANQD-SNTVSVFDIDPDTGKL 328 (345)
T ss_dssp EECTTT--EEEEEEECTTTTT----EEE--EEEEEESSSSEE----EEEE-TTSSEEEEEETT-TTEEEEEEEETTTTEE
T ss_pred EeccCC--EEEEEEEecCCCc----eEE--EEEEeCCCCCcc----EEEEeCCCCEEEEEecC-CCeEEEEEEeCCCCcE
Confidence 766544 4444554322121 110 011111110 11 12345667666554433 3335777888889988
Q ss_pred EEEEe
Q 004839 413 NIIQQ 417 (728)
Q Consensus 413 ~~l~~ 417 (728)
+....
T Consensus 329 ~~~~~ 333 (345)
T PF10282_consen 329 TPVGS 333 (345)
T ss_dssp EEEEE
T ss_pred EEecc
Confidence 76654
No 173
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.08 E-value=0.0021 Score=68.54 Aligned_cols=146 Identities=15% Similarity=0.153 Sum_probs=80.0
Q ss_pred eeceeeCCCCCEEEEEEEcCCCcEEEEEEEECC-CCceeccC---ccceeeeEEEecCCCEEEEEEecCCCCcceeEEEE
Q 004839 126 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLN-SGALCSKP---QAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 201 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~-tg~~~~~~---~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~ 201 (728)
...+.+||||++|+.+.... ..|.+++++ +|+..... .......+.++|||+.||.+... ...|..++
T Consensus 37 ~~~l~~spd~~~lyv~~~~~----~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~----~~~v~v~~ 108 (330)
T PRK11028 37 VQPMVISPDKRHLYVGVRPE----FRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN----ANCVSVSP 108 (330)
T ss_pred CccEEECCCCCEEEEEECCC----CcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC----CCeEEEEE
Confidence 33567899999886653322 236677775 45432221 12345678999999988766432 34677777
Q ss_pred CCCCC-ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeE-------EeeecCCceEEEEeec
Q 004839 202 IGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLT-------LIWECEGLAHCIVEHH 273 (728)
Q Consensus 202 l~t~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~-------~l~~~~~~~~~~~~~d 273 (728)
+.+.. ....+........-..+.++|||++|++.... ...|+++|+++. +.+. .+..........++++
T Consensus 109 ~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~--~~~v~v~d~~~~-g~l~~~~~~~~~~~~g~~p~~~~~~pd 185 (330)
T PRK11028 109 LDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK--EDRIRLFTLSDD-GHLVAQEPAEVTTVEGAGPRHMVFHPN 185 (330)
T ss_pred ECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC--CCEEEEEEECCC-CcccccCCCceecCCCCCCceEEECCC
Confidence 75321 11111110111111235789999999876543 346888888652 2221 1111222223456788
Q ss_pred CCEEEEEEc
Q 004839 274 EGFLYLFTD 282 (728)
Q Consensus 274 g~~l~~~tn 282 (728)
|+.+|....
T Consensus 186 g~~lyv~~~ 194 (330)
T PRK11028 186 QQYAYCVNE 194 (330)
T ss_pred CCEEEEEec
Confidence 777776543
No 174
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=98.05 E-value=6.4e-05 Score=78.29 Aligned_cols=236 Identities=17% Similarity=0.159 Sum_probs=126.8
Q ss_pred cEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHH
Q 004839 478 ISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIK 557 (728)
Q Consensus 478 ~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~ 557 (728)
..+.+.+..|++....++.|.++..||........ ......++.+++.++..+....++.+-..+...... ....
T Consensus 31 ~~~~~~l~~p~~~~~~~~~p~v~~~h~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~ 105 (299)
T COG1073 31 IALAAVLHLPPSGNEEKKLPAVVFLHGFGSSKEQS--LGYAVLLAEKGYRVLAGDASLFGESGGDPRGLADSE---GYAE 105 (299)
T ss_pred ceeeeEEEecCCCCccccCceEEeccCccccccCc--chHHHHhhhceeEEeeeccccccccccccccccCcc---cccc
Confidence 56778888888754446799999999865543222 125678888999988887522221111111000000 0011
Q ss_pred HHHHHHHHHHH---------cCCCCCCcEEEEEeCccHHHHHHHHHhCC---CceeEEEEeCCcccchhhccC-------
Q 004839 558 DFISCARFLIE---------KEIVKEHKLAGWGYSAGGLLVAAAINCCP---DLFRAVVLEVPFLDATNTLLY------- 618 (728)
Q Consensus 558 D~~~~~~~l~~---------~~~~d~~ri~i~G~S~GG~~~~~~~~~~p---~~f~a~v~~~p~~d~~~~~~~------- 618 (728)
++......... ......++....|.+.||..+..++...+ +..+.++...++-........
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~g~~~~~~~~~~~~~~~ 185 (299)
T COG1073 106 DFSAAVLLLLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGESLGGALALLLLGANPELA 185 (299)
T ss_pred ccchhheeeeccccccHHHHHHhhhcCcceEEEEEeeccchHHHhhcchhHHHhhcccceeeccCceeeccccccchHHH
Confidence 11111111000 01112367888888888888887776655 222222222221111110000
Q ss_pred -CCCCC--Ccccccc-------cCCCCCHHHHHHHHccCcccccccCCC-CCeEEEEcCCCCCCCHHHHHHHHHHHHhCC
Q 004839 619 -PILPL--IAADYEE-------FGYPGDIDDFHAIRNYSPYDNIQKDVL-YPAVLVTSSFNTRFGVWEAAKWVARVREST 687 (728)
Q Consensus 619 -~~~~~--~~~~~~~-------~g~p~~~~~~~~~~~~sP~~~i~~~~~-~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~ 687 (728)
..... ....+.. +..+. .. ...+..+++...+.+ +. .|+|++||..|..||..++.+++.+.+...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~d~~~~~~~-i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~~ 262 (299)
T COG1073 186 RELIDYLITPGGFAPLPAPEAPLDTLP-LR-AVLLLLLDPFDDAEK-ISPRPVLLVHGERDEVVPLRDAEDLYEAARERP 262 (299)
T ss_pred HhhhhhhccCCCCCCCCcccccccccc-cc-hhhhccCcchhhHhh-cCCcceEEEecCCCcccchhhhHHHHhhhccCC
Confidence 00000 0000000 00000 11 223566677777776 55 799999999999999999999999998742
Q ss_pred CCCCCccEEEEcCCCCCCCc--hhhhHHHHHHHHHHHHHhh
Q 004839 688 IYDPKRPILLNLTTDIVEEN--RYLQCKESALETAFLIKMM 726 (728)
Q Consensus 688 ~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~afl~~~l 726 (728)
...+++++++|.... ............+||.++|
T Consensus 263 -----~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~l 298 (299)
T COG1073 263 -----KKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERHL 298 (299)
T ss_pred -----ceEEEecCCccccccCccHHHHHHHHHHHHHHHHhc
Confidence 233336888898764 3333355666789998876
No 175
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=98.04 E-value=2.4e-05 Score=63.75 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=56.5
Q ss_pred CcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcH
Q 004839 477 GISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSI 556 (728)
Q Consensus 477 G~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~ 556 (728)
|.+|.+....|+.. +..+|+++||-.... ..|...++.|+++||.|+..|.||+|.+. +.. .....+
T Consensus 1 G~~L~~~~w~p~~~----~k~~v~i~HG~~eh~--~ry~~~a~~L~~~G~~V~~~D~rGhG~S~------g~r-g~~~~~ 67 (79)
T PF12146_consen 1 GTKLFYRRWKPENP----PKAVVVIVHGFGEHS--GRYAHLAEFLAEQGYAVFAYDHRGHGRSE------GKR-GHIDSF 67 (79)
T ss_pred CcEEEEEEecCCCC----CCEEEEEeCCcHHHH--HHHHHHHHHHHhCCCEEEEECCCcCCCCC------Ccc-cccCCH
Confidence 56777777777642 468999999864332 35778899999999999999999999864 111 123577
Q ss_pred HHHHHHHHHHH
Q 004839 557 KDFISCARFLI 567 (728)
Q Consensus 557 ~D~~~~~~~l~ 567 (728)
+++++.+..++
T Consensus 68 ~~~v~D~~~~~ 78 (79)
T PF12146_consen 68 DDYVDDLHQFI 78 (79)
T ss_pred HHHHHHHHHHh
Confidence 88777766554
No 176
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=98.04 E-value=3.7e-05 Score=78.33 Aligned_cols=122 Identities=24% Similarity=0.351 Sum_probs=82.6
Q ss_pred CCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCc-----ccHHHHHHHHH-CCeEEEEEcCCCC
Q 004839 463 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDK-----RWRSELKSLLD-RGWVVAFADVRGG 536 (728)
Q Consensus 463 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~-----~~~~~~~~l~~-~Gy~v~~~d~RG~ 536 (728)
.....+++.+.. |+..|.+..+.-++.. +.--||+.-|. +...+. ......+.++. .|..|+.+||||-
T Consensus 108 ~~~~~kRv~Iq~-D~~~IDt~~I~~~~a~---~~RWiL~s~GN-g~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGV 182 (365)
T PF05677_consen 108 EVSSVKRVPIQY-DGVKIDTMAIHQPEAK---PQRWILVSNGN-GECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGV 182 (365)
T ss_pred cccceeeEEEee-CCEEEEEEEeeCCCCC---CCcEEEEEcCC-hHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCcc
Confidence 334567777775 9999998776644432 23355555542 222212 12234555555 6999999999998
Q ss_pred CCCCCccccccccCCCCCcHHHHHHHHHHHHHcC-CCCCCcEEEEEeCccHHHHHHHHHhC
Q 004839 537 GGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKE-IVKEHKLAGWGYSAGGLLVAAAINCC 596 (728)
Q Consensus 537 g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-~~d~~ri~i~G~S~GG~~~~~~~~~~ 596 (728)
|.+ .|... ....+.|..++++||.++. .+.+++|.+.|+|.||.++..++.++
T Consensus 183 g~S------~G~~s-~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 183 GSS------TGPPS-RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred ccC------CCCCC-HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 865 23332 2456788899999999753 56899999999999999998876653
No 177
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.03 E-value=0.00023 Score=68.04 Aligned_cols=176 Identities=14% Similarity=0.087 Sum_probs=106.9
Q ss_pred CccEEEEEcCCCCCCcCcccHHH----HHHHHHCCeEEEEEcCCC------CC--CCC-------------Cccccccc-
Q 004839 495 QNPGLLHGHGAYGELLDKRWRSE----LKSLLDRGWVVAFADVRG------GG--GGG-------------KKWHHDGR- 548 (728)
Q Consensus 495 ~~P~vv~~hGg~~~~~~~~~~~~----~~~l~~~Gy~v~~~d~RG------~g--~~G-------------~~~~~~~~- 548 (728)
+.|-||++||--. .+..|+.- ...|.+. +-.+++|-+- .. +.+ ..|.....
T Consensus 4 ~k~rvLcLHGfrQ--sg~~F~~Ktg~~rK~l~k~-~el~f~~aPh~~~~~~~~~~~~~~~~~a~~~~~~~~~~Wf~~n~~ 80 (230)
T KOG2551|consen 4 KKLRVLCLHGFRQ--SGKVFSEKTGSLRKLLKKL-AELVFPDAPHELPKADLPDSEREKKFDAPPDVEQNRYGWFSNNEA 80 (230)
T ss_pred CCceEEEecchhh--ccHHHHHHhhhHHHHHHhh-heEEecCCCccCCcccCCcccccccccCCcccccchhhhhccccc
Confidence 3577999998533 33455432 3344444 6667666541 11 110 23333322
Q ss_pred cCCCCCcHHH-HHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHh--CCC------ceeEEEEeCCcccchhhccCC
Q 004839 549 RTKKLNSIKD-FISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC--CPD------LFRAVVLEVPFLDATNTLLYP 619 (728)
Q Consensus 549 ~~~~~~~~~D-~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~--~p~------~f~a~v~~~p~~d~~~~~~~~ 619 (728)
.......++. +....+|+.++|--| ||.|.|.|+.|+..+++. ... -|+-+|..+|+.-..
T Consensus 81 ~~~~~~~~eesl~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~------ 150 (230)
T KOG2551|consen 81 SFTEYFGFEESLEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPS------ 150 (230)
T ss_pred ccccccChHHHHHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCc------
Confidence 1122223333 555667778888888 999999999999998872 111 356677666643210
Q ss_pred CCCCCcccccccCCCCCHHHHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEc
Q 004839 620 ILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNL 699 (728)
Q Consensus 620 ~~~~~~~~~~~~g~p~~~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~ 699 (728)
.+. +.. .+... +++|.|-|.|+.|..||...+..+++....+ +++..
T Consensus 151 -------------~~~---~~~--------~~~~~-i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a--------~vl~H 197 (230)
T KOG2551|consen 151 -------------KKL---DES--------AYKRP-LSTPSLHIFGETDTIVPSERSEQLAESFKDA--------TVLEH 197 (230)
T ss_pred -------------chh---hhh--------hhccC-CCCCeeEEecccceeecchHHHHHHHhcCCC--------eEEec
Confidence 010 001 01223 7899999999999999999999999998753 34467
Q ss_pred CCCCCCCchhhhHHHHH
Q 004839 700 TTDIVEENRYLQCKESA 716 (728)
Q Consensus 700 ~~gH~~~~~~~~~~~~~ 716 (728)
.+||.........+.++
T Consensus 198 pggH~VP~~~~~~~~i~ 214 (230)
T KOG2551|consen 198 PGGHIVPNKAKYKEKIA 214 (230)
T ss_pred CCCccCCCchHHHHHHH
Confidence 89999877444444443
No 178
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.02 E-value=0.00023 Score=67.70 Aligned_cols=185 Identities=13% Similarity=0.109 Sum_probs=111.7
Q ss_pred cEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCC------CCCCCCCccccccccCC-CCCcHHH---HHHHHHHH
Q 004839 497 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVR------GGGGGGKKWHHDGRRTK-KLNSIKD---FISCARFL 566 (728)
Q Consensus 497 P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~R------G~g~~G~~~~~~~~~~~-~~~~~~D---~~~~~~~l 566 (728)
-+|++.||--.+ ..++......|.-+..-.++|.-+ -.|..+..|.+...-.. +..+-+. ..+.+..|
T Consensus 4 atIi~LHglGDs--g~~~~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~L 81 (206)
T KOG2112|consen 4 ATIIFLHGLGDS--GSGWAQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIANL 81 (206)
T ss_pred EEEEEEecCCCC--CccHHHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHHH
Confidence 478999984222 233443344444467777777432 12344556665433221 1112222 23345555
Q ss_pred HHc---CCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCCCCcccccccCCCCCHHHHHHH
Q 004839 567 IEK---EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAI 643 (728)
Q Consensus 567 ~~~---~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~ 643 (728)
+++ ..++++||++.|.|+||.+++.++..+|....+.+...++..-.. ..+. +.+.
T Consensus 82 i~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~-----------~~~~--~~~~-------- 140 (206)
T KOG2112|consen 82 IDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRAS-----------IGLP--GWLP-------- 140 (206)
T ss_pred HHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccch-----------hhcc--CCcc--------
Confidence 543 456889999999999999999999988655555555444332110 0000 1110
Q ss_pred HccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEE--EcCCCCCCCchhhhHHHHHHHHHH
Q 004839 644 RNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEENRYLQCKESALETAF 721 (728)
Q Consensus 644 ~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~~~~af 721 (728)
. . ...|.++.||..|+.||..-.++....|+..++ .+.+ |++-+|..... ++.....|
T Consensus 141 --------~-~-~~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~-----~~~f~~y~g~~h~~~~~-----e~~~~~~~ 200 (206)
T KOG2112|consen 141 --------G-V-NYTPILLCHGTADPLVPFRFGEKSAQFLKSLGV-----RVTFKPYPGLGHSTSPQ-----ELDDLKSW 200 (206)
T ss_pred --------c-c-CcchhheecccCCceeehHHHHHHHHHHHHcCC-----ceeeeecCCccccccHH-----HHHHHHHH
Confidence 0 0 156889999999999999999999999999883 3666 88999964331 22334466
Q ss_pred HHH
Q 004839 722 LIK 724 (728)
Q Consensus 722 l~~ 724 (728)
+.+
T Consensus 201 ~~~ 203 (206)
T KOG2112|consen 201 IKT 203 (206)
T ss_pred HHH
Confidence 655
No 179
>PRK10115 protease 2; Provisional
Probab=98.02 E-value=0.0035 Score=73.16 Aligned_cols=246 Identities=6% Similarity=-0.089 Sum_probs=137.6
Q ss_pred eEeCCeEEEEEccCCCeeEEEEEEecCCCcccccCCCCCCCccCCCCCCCcEEEeecccccccCCceEEeeceeeCCCCC
Q 004839 57 DLHHRRLYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHK 136 (728)
Q Consensus 57 ~~~g~~~yy~~~~~g~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~ 136 (728)
+++|.++.|..+.+|.|...++.+.... |. .+.+. +.. . . ..+.|+|||+
T Consensus 135 Spdg~~la~~~d~~G~E~~~l~v~d~~t--------------------g~--~l~~~--i~~--~---~-~~~~w~~D~~ 184 (686)
T PRK10115 135 TPDNTIMALAEDFLSRRQYGIRFRNLET--------------------GN--WYPEL--LDN--V---E-PSFVWANDSW 184 (686)
T ss_pred CCCCCEEEEEecCCCcEEEEEEEEECCC--------------------CC--CCCcc--ccC--c---c-eEEEEeeCCC
Confidence 4789999999999999999998876532 21 11111 110 1 1 2367999999
Q ss_pred EEEEEEEcCC-CcEEEEEEEECCCC--ceeccCc--cceeeeEEEec-CCCEEEEEEecCCCCcceeEEEECC--CCCce
Q 004839 137 FLAYTMYDKD-NDYFTLSVRNLNSG--ALCSKPQ--AVRVSNIAWAK-DGQALIYVVTDQNKRPYQIYCSIIG--STDED 208 (728)
Q Consensus 137 ~lA~~~~~~g-~e~~~l~v~dl~tg--~~~~~~~--~~~~~~~~Wsp-Dg~~l~y~~~~~~~~~~~v~~~~l~--t~~~~ 208 (728)
.|.|+....+ ....+||..++.|+ +...+.. ........|.. |++++++..... ....++.++.. ++...
T Consensus 185 ~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~--~~~~~~l~~~~~~~~~~~ 262 (686)
T PRK10115 185 TFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA--TTSEVLLLDAELADAEPF 262 (686)
T ss_pred EEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC--ccccEEEEECcCCCCCce
Confidence 9999977443 24578999999998 3333322 11222244555 999887554432 23467777743 22222
Q ss_pred eEEeeecCcceEEEEEEcCCCCEEEEEEcCC-CceEEEEEeCCCCCCCeEEeeecCCc-eEEEEeecCCEEEEEEcCCcc
Q 004839 209 ALLLEESNENVYVNIRHTKDFHFVCVHTFST-TSSKVFLINAADPFSGLTLIWECEGL-AHCIVEHHEGFLYLFTDAAKE 286 (728)
Q Consensus 209 ~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~l~~~dl~~~~~~~~~l~~~~~~-~~~~~~~dg~~l~~~tn~~~~ 286 (728)
.++..+.+..+. +. ..+..+++.++.+ ....|..+++.+. +.++.+.+.... ..-.+...++.|++..+.++
T Consensus 263 ~~~~~~~~~~~~--~~--~~~~~ly~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g- 336 (686)
T PRK10115 263 VFLPRRKDHEYS--LD--HYQHRFYLRSNRHGKNFGLYRTRVRDE-QQWEELIPPRENIMLEGFTLFTDWLVVEERQRG- 336 (686)
T ss_pred EEEECCCCCEEE--EE--eCCCEEEEEEcCCCCCceEEEecCCCc-ccCeEEECCCCCCEEEEEEEECCEEEEEEEeCC-
Confidence 223233333332 21 2345677777654 4567888888743 456677766332 33344445778888887664
Q ss_pred CCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEe----eCCEEEEEEecCCe-eEEEEEecCC
Q 004839 287 GQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDF----CKTHMALILREGRT-YRLCSVSLPL 350 (728)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~----~~~~lv~~~~~~g~-~~l~~~~l~~ 350 (728)
..+|+.++.. ......+....+.. ...+.. ..+.+++....-.. +.++.+++.+
T Consensus 337 -----~~~l~~~~~~----~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~ 395 (686)
T PRK10115 337 -----LTSLRQINRK----TREVIGIAFDDPAY-VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDT 395 (686)
T ss_pred -----EEEEEEEcCC----CCceEEecCCCCce-EeeecccCCCCCceEEEEEecCCCCCEEEEEECCC
Confidence 2567777654 12233332122211 222221 12445555444333 4788887654
No 180
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.02 E-value=0.00024 Score=72.99 Aligned_cols=195 Identities=12% Similarity=0.064 Sum_probs=107.1
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc---cceeeeEEEecCCCEEEEEEecCCCCcceeEEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 201 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~ 201 (728)
.+-..+||++|+|||-++. +. ..-||....++.-.+..+. ...+..+.||||.++|+-...++ .+++.|
T Consensus 226 EVWfl~FS~nGkyLAsaSk-D~--Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e-----~~~lwD 297 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASK-DS--TAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE-----VLSLWD 297 (519)
T ss_pred cEEEEEEcCCCeeEeeccC-Cc--eEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH-----heeecc
Confidence 4667789999999998753 22 2334555444431111122 34678899999999987764433 377788
Q ss_pred CCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCC-CCeEEeeecCCceEEEEeecCCEEEEE
Q 004839 202 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPF-SGLTLIWECEGLAHCIVEHHEGFLYLF 280 (728)
Q Consensus 202 l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~~l~~~~~~~~~~~~~dg~~l~~~ 280 (728)
+.++. -...|...-+-...+..|-|||..++.-+.+ ..++..|+++.. +.++-+.. .......++.||++++.+
T Consensus 298 v~tgd-~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d---r~i~~wdlDgn~~~~W~gvr~-~~v~dlait~Dgk~vl~v 372 (519)
T KOG0293|consen 298 VDTGD-LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD---RTIIMWDLDGNILGNWEGVRD-PKVHDLAITYDGKYVLLV 372 (519)
T ss_pred CCcch-hhhhcccCcCCCcceeEEccCCceeEecCCC---CcEEEecCCcchhhccccccc-ceeEEEEEcCCCcEEEEE
Confidence 88774 2334433311122467899999986654433 468888887621 01111100 011223556899999888
Q ss_pred EcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCC-EEEEEEecCCeeEEEEEecC
Q 004839 281 TDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKT-HMALILREGRTYRLCSVSLP 349 (728)
Q Consensus 281 tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~-~lv~~~~~~g~~~l~~~~l~ 349 (728)
+.... .+++ +.++.. -..++.. +..+..+.+.++ +++++-..+- .+...|+.
T Consensus 373 ~~d~~-------i~l~--~~e~~~----dr~lise--~~~its~~iS~d~k~~LvnL~~q--ei~LWDl~ 425 (519)
T KOG0293|consen 373 TVDKK-------IRLY--NREARV----DRGLISE--EQPITSFSISKDGKLALVNLQDQ--EIHLWDLE 425 (519)
T ss_pred ecccc-------eeee--chhhhh----hhccccc--cCceeEEEEcCCCcEEEEEcccC--eeEEeecc
Confidence 75332 2333 332000 0113333 345677777763 5555544433 35555554
No 181
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=97.98 E-value=0.00041 Score=74.44 Aligned_cols=87 Identities=20% Similarity=0.121 Sum_probs=62.2
Q ss_pred HHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHH
Q 004839 515 RSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAIN 594 (728)
Q Consensus 515 ~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~ 594 (728)
...++.|++ |+.|++.|.+--+. .....+...++|++..+...++. +.++ +-++|.|+||.+++++++
T Consensus 120 RS~V~~Ll~-g~dVYl~DW~~p~~--------vp~~~~~f~ldDYi~~l~~~i~~--~G~~-v~l~GvCqgG~~~laa~A 187 (406)
T TIGR01849 120 RSTVEALLP-DHDVYITDWVNARM--------VPLSAGKFDLEDYIDYLIEFIRF--LGPD-IHVIAVCQPAVPVLAAVA 187 (406)
T ss_pred HHHHHHHhC-CCcEEEEeCCCCCC--------CchhcCCCCHHHHHHHHHHHHHH--hCCC-CcEEEEchhhHHHHHHHH
Confidence 455788888 99999999764331 11223445788888665555533 2445 999999999999887665
Q ss_pred hC-----CCceeEEEEeCCcccch
Q 004839 595 CC-----PDLFRAVVLEVPFLDAT 613 (728)
Q Consensus 595 ~~-----p~~f~a~v~~~p~~d~~ 613 (728)
.. |+.++.+++.++.+|..
T Consensus 188 l~a~~~~p~~~~sltlm~~PID~~ 211 (406)
T TIGR01849 188 LMAENEPPAQPRSMTLMGGPIDAR 211 (406)
T ss_pred HHHhcCCCCCcceEEEEecCccCC
Confidence 43 66799999999888864
No 182
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.98 E-value=0.0091 Score=61.10 Aligned_cols=264 Identities=13% Similarity=0.120 Sum_probs=130.3
Q ss_pred EeeceeeCCCCCEEEEEEEcCCC-cEEEEEEEECCCCceeccCc---cce-eeeEEEecCCCEEEEEEecCCCCcceeEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDN-DYFTLSVRNLNSGALCSKPQ---AVR-VSNIAWAKDGQALIYVVTDQNKRPYQIYC 199 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~-e~~~l~v~dl~tg~~~~~~~---~~~-~~~~~WspDg~~l~y~~~~~~~~~~~v~~ 199 (728)
..+.+.|+|++++| |+....|+ ..-.-|-+|..+|+...+.. .+. ...++.++||+.+|-..+.. ..|-+
T Consensus 41 nptyl~~~~~~~~L-Y~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~----g~v~v 115 (346)
T COG2706 41 NPTYLAVNPDQRHL-YVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS----GSVSV 115 (346)
T ss_pred CCceEEECCCCCEE-EEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC----ceEEE
Confidence 34566799999987 54444432 23345666766687655432 222 25688999998665554332 23444
Q ss_pred EECCC-CC--ce-eEEe-eec------CcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCe---EEeeecCCc
Q 004839 200 SIIGS-TD--ED-ALLL-EES------NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGL---TLIWECEGL 265 (728)
Q Consensus 200 ~~l~t-~~--~~-~lv~-~~~------~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~---~~l~~~~~~ 265 (728)
..+.. +. .- .++. .+. .........++|||++|+...- +..+|++++++++.-.+ ..+.+..+.
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL--G~Dri~~y~~~dg~L~~~~~~~v~~G~GP 193 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL--GTDRIFLYDLDDGKLTPADPAEVKPGAGP 193 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec--CCceEEEEEcccCccccccccccCCCCCc
Confidence 44432 11 10 1111 111 0111123568999999876544 34578888887633211 122222222
Q ss_pred eEEEEeecCCEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEE-----eecC--CCceEEEEEeeC--CEEEEEEe
Q 004839 266 AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESV-----FIDD--QGLVVEDVDFCK--THMALILR 336 (728)
Q Consensus 266 ~~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l-----i~~~--~~~~i~~~~~~~--~~lv~~~~ 336 (728)
....+-++++..|++..-+. ...++..+-. .++.+++ ++.+ .......+.+.. ++||+.-|
T Consensus 194 RHi~FHpn~k~aY~v~EL~s------tV~v~~y~~~----~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR 263 (346)
T COG2706 194 RHIVFHPNGKYAYLVNELNS------TVDVLEYNPA----VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR 263 (346)
T ss_pred ceEEEcCCCcEEEEEeccCC------EEEEEEEcCC----CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC
Confidence 33344455666666554442 1233333321 1222221 1221 122344555554 55665555
Q ss_pred cCCeeEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCccCCCcEEEEEEccCCCCceEEEEECCCCeEEEEE
Q 004839 337 EGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQ 416 (728)
Q Consensus 337 ~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~~~~~l~ 416 (728)
....-.++.++..++. ..+....+..-..| .+++++..++.++...+...+ -.+|+.|.++|++.++.
T Consensus 264 g~dsI~~f~V~~~~g~----L~~~~~~~teg~~P-------R~F~i~~~g~~Liaa~q~sd~-i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 264 GHDSIAVFSVDPDGGK----LELVGITPTEGQFP-------RDFNINPSGRFLIAANQKSDN-ITVFERDKETGRLTLLG 331 (346)
T ss_pred CCCeEEEEEEcCCCCE----EEEEEEeccCCcCC-------ccceeCCCCCEEEEEccCCCc-EEEEEEcCCCceEEecc
Confidence 4443445555543321 11100000111122 234566667777666655555 78999999999987765
Q ss_pred e
Q 004839 417 Q 417 (728)
Q Consensus 417 ~ 417 (728)
.
T Consensus 332 ~ 332 (346)
T COG2706 332 R 332 (346)
T ss_pred c
Confidence 4
No 183
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=0.0033 Score=67.24 Aligned_cols=225 Identities=15% Similarity=0.126 Sum_probs=133.7
Q ss_pred CCCcEEEeecccccccCC------ceEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccC--ccceeeeEE
Q 004839 104 KKIEQKLLDYNQEAERFG------GYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP--QAVRVSNIA 175 (728)
Q Consensus 104 ~~~~~~lld~n~~~~~~~------~~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~--~~~~~~~~~ 175 (728)
+|..-++.|......... ++.....++||-|+|++|-..- ..|.|++..+-..+..- ...++..|.
T Consensus 280 e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~------~sisIyEtpsf~lld~Kslki~gIr~Fs 353 (698)
T KOG2314|consen 280 EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG------NSISIYETPSFMLLDKKSLKISGIRDFS 353 (698)
T ss_pred CCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc------ceEEEEecCceeeecccccCCccccCcc
Confidence 344446677754322211 1334456899999999997632 23777776663333221 145788999
Q ss_pred EecCCCEEEEEEecCCCCcceeEEEECCCCCc--eeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCc---------eEE
Q 004839 176 WAKDGQALIYVVTDQNKRPYQIYCSIIGSTDE--DALLLEESNENVYVNIRHTKDFHFVCVHTFSTTS---------SKV 244 (728)
Q Consensus 176 WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~--~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~---------~~l 244 (728)
|||-+.-|+|-....++-+.++-+..+.+.+. ..-++.-.| +.+.|-.+|+||.+...+.+. -+|
T Consensus 354 wsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsD----ckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eI 429 (698)
T KOG2314|consen 354 WSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSD----CKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEI 429 (698)
T ss_pred cCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeec----cEEEeccCCcEEEEEEEeeccccccceEeeEEE
Confidence 99999999997665556677787777776641 122333333 235788999999998876432 256
Q ss_pred EEEeCCCCCCCeEEeeecCCceEEEEeecCCEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEE
Q 004839 245 FLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDV 324 (728)
Q Consensus 245 ~~~dl~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~ 324 (728)
+.++-.+ -....+--.+.-..+.++|.|++|.+++-.... .+...|.+... ...|.-+..-+ ......+
T Consensus 430 frireKd--Ipve~velke~vi~FaWEP~gdkF~vi~g~~~k----~tvsfY~~e~~----~~~~~lVk~~d-k~~~N~v 498 (698)
T KOG2314|consen 430 FRIREKD--IPVEVVELKESVIAFAWEPHGDKFAVISGNTVK----NTVSFYAVETN----IKKPSLVKELD-KKFANTV 498 (698)
T ss_pred EEeeccC--CCceeeecchheeeeeeccCCCeEEEEEccccc----cceeEEEeecC----CCchhhhhhhc-ccccceE
Confidence 6665443 222233223334566788999999888764421 24556665432 23444221111 1222333
Q ss_pred Ee--eCCEEEEEEecCCeeEEEEEecC
Q 004839 325 DF--CKTHMALILREGRTYRLCSVSLP 349 (728)
Q Consensus 325 ~~--~~~~lv~~~~~~g~~~l~~~~l~ 349 (728)
.+ .+..+++.........|..+|.+
T Consensus 499 fwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 499 FWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred EEcCCCcEEEEEEecccccceEEEecc
Confidence 34 45677777777666778888865
No 184
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.93 E-value=0.0022 Score=68.24 Aligned_cols=199 Identities=11% Similarity=0.051 Sum_probs=99.8
Q ss_pred eceeeCCCCCEEEEEEEcCCCcEEEEEEEECCC-CceeccC--c--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEE
Q 004839 127 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNS-GALCSKP--Q--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 201 (728)
Q Consensus 127 ~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~t-g~~~~~~--~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~ 201 (728)
..+.++|||++|..+. ..+ ..|.++++++ |...... . ......+.++|||+.||.+.. ....|+.++
T Consensus 83 ~~i~~~~~g~~l~v~~-~~~---~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~----~~~~v~v~d 154 (330)
T PRK11028 83 THISTDHQGRFLFSAS-YNA---NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL----KEDRIRLFT 154 (330)
T ss_pred eEEEECCCCCEEEEEE-cCC---CeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC----CCCEEEEEE
Confidence 3567999999886553 322 2478888864 3221111 1 123355789999998876533 234788888
Q ss_pred CCCCCc-e----e-EEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeee-----cC-Cc----
Q 004839 202 IGSTDE-D----A-LLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWE-----CE-GL---- 265 (728)
Q Consensus 202 l~t~~~-~----~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~-----~~-~~---- 265 (728)
+.+... . . ......... ..+.++|||+++++.... .+.|.+++++...+..+.+.. .. .+
T Consensus 155 ~~~~g~l~~~~~~~~~~~~g~~p--~~~~~~pdg~~lyv~~~~--~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 230 (330)
T PRK11028 155 LSDDGHLVAQEPAEVTTVEGAGP--RHMVFHPNQQYAYCVNEL--NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA 230 (330)
T ss_pred ECCCCcccccCCCceecCCCCCC--ceEEECCCCCEEEEEecC--CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc
Confidence 865321 0 0 011111111 246889999998876543 346666666532233322211 10 01
Q ss_pred eEEEEeecCCEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCe--EEeecCCCceEEE--EEeeCCEEEEEEecCCee
Q 004839 266 AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWE--SVFIDDQGLVVED--VDFCKTHMALILREGRTY 341 (728)
Q Consensus 266 ~~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~li~~~~~~~i~~--~~~~~~~lv~~~~~~g~~ 341 (728)
....++++|+++|. +++... ...++.++.+ ...++ ..++.. ..... +...+++|++....++.-
T Consensus 231 ~~i~~~pdg~~lyv-~~~~~~-----~I~v~~i~~~----~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v 298 (330)
T PRK11028 231 ADIHITPDGRHLYA-CDRTAS-----LISVFSVSED----GSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHI 298 (330)
T ss_pred eeEEECCCCCEEEE-ecCCCC-----eEEEEEEeCC----CCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcE
Confidence 12345677777666 455432 2334443322 11221 111111 11223 334467888776656555
Q ss_pred EEEEEecC
Q 004839 342 RLCSVSLP 349 (728)
Q Consensus 342 ~l~~~~l~ 349 (728)
.++.++..
T Consensus 299 ~v~~~~~~ 306 (330)
T PRK11028 299 SVYEIDGE 306 (330)
T ss_pred EEEEEcCC
Confidence 55555533
No 185
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.90 E-value=0.015 Score=62.37 Aligned_cols=201 Identities=15% Similarity=0.162 Sum_probs=105.9
Q ss_pred ceeeCCCCCEEEEEEEcCCCcEEEEEEEECCC-CceeccC--------------c-cceeeeEEEecCCCEEEEEEecCC
Q 004839 128 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNS-GALCSKP--------------Q-AVRVSNIAWAKDGQALIYVVTDQN 191 (728)
Q Consensus 128 ~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~t-g~~~~~~--------------~-~~~~~~~~WspDg~~l~y~~~~~~ 191 (728)
.+.++|||++|..+ +..++ .+.+++++. |...... . ......+.++|||+.+|..-.
T Consensus 91 ~i~~~~~g~~l~va-ny~~g---~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl--- 163 (345)
T PF10282_consen 91 HIAVDPDGRFLYVA-NYGGG---SVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL--- 163 (345)
T ss_dssp EEEECTTSSEEEEE-ETTTT---EEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET---
T ss_pred EEEEecCCCEEEEE-EccCC---eEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec---
Confidence 45689999988665 55444 377777766 4432221 0 123456899999998866532
Q ss_pred CCcceeEEEECCCCC-c----eeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEee---ec-
Q 004839 192 KRPYQIYCSIIGSTD-E----DALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIW---EC- 262 (728)
Q Consensus 192 ~~~~~v~~~~l~t~~-~----~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~---~~- 262 (728)
...+|+.+++.... . ..+........ -.+.++|||+++++...-. +.|.++++....+.++.+. ..
T Consensus 164 -G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP--Rh~~f~pdg~~~Yv~~e~s--~~v~v~~~~~~~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 164 -GADRVYVYDIDDDTGKLTPVDSIKVPPGSGP--RHLAFSPDGKYAYVVNELS--NTVSVFDYDPSDGSLTEIQTISTLP 238 (345)
T ss_dssp -TTTEEEEEEE-TTS-TEEEEEEEECSTTSSE--EEEEE-TTSSEEEEEETTT--TEEEEEEEETTTTEEEEEEEEESCE
T ss_pred -CCCEEEEEEEeCCCceEEEeeccccccCCCC--cEEEEcCCcCEEEEecCCC--CcEEEEeecccCCceeEEEEeeecc
Confidence 23478888886543 1 11111111111 2367899999998876543 4555555542223333221 11
Q ss_pred --C----CceEEEEeecCCEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEE--eecCCCceEEEEEe--eCCEEE
Q 004839 263 --E----GLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESV--FIDDQGLVVEDVDF--CKTHMA 332 (728)
Q Consensus 263 --~----~~~~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l--i~~~~~~~i~~~~~--~~~~lv 332 (728)
. ......+++||++||+ +|+..+ ...++.++.+ .+..+.+ ++- .+....++.+ .+++|+
T Consensus 239 ~~~~~~~~~~~i~ispdg~~lyv-snr~~~-----sI~vf~~d~~----~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 239 EGFTGENAPAEIAISPDGRFLYV-SNRGSN-----SISVFDLDPA----TGTLTLVQTVPT-GGKFPRHFAFSPDGRYLY 307 (345)
T ss_dssp TTSCSSSSEEEEEE-TTSSEEEE-EECTTT-----EEEEEEECTT----TTTEEEEEEEEE-SSSSEEEEEE-TTSSEEE
T ss_pred ccccccCCceeEEEecCCCEEEE-EeccCC-----EEEEEEEecC----CCceEEEEEEeC-CCCCccEEEEeCCCCEEE
Confidence 1 1223456788886665 676543 2344444322 1333322 221 2334566666 457777
Q ss_pred EEEecCCeeEEEEEecCCC
Q 004839 333 LILREGRTYRLCSVSLPLP 351 (728)
Q Consensus 333 ~~~~~~g~~~l~~~~l~~~ 351 (728)
+....++.-.++.+|..+|
T Consensus 308 Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 308 VANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp EEETTTTEEEEEEEETTTT
T ss_pred EEecCCCeEEEEEEeCCCC
Confidence 7766666666666665443
No 186
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.85 E-value=0.015 Score=61.49 Aligned_cols=116 Identities=14% Similarity=0.039 Sum_probs=71.9
Q ss_pred CCCEEEEEEEcCC-CcEEEEEEEECCCCceeccCccceeeeEEEecCCCEEEEEEe-----cCCCCcceeEEEECCCCC-
Q 004839 134 DHKFLAYTMYDKD-NDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVT-----DQNKRPYQIYCSIIGSTD- 206 (728)
Q Consensus 134 DG~~lA~~~~~~g-~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~-----~~~~~~~~v~~~~l~t~~- 206 (728)
|+++ +|..|..- .-..+|+|+|.++++.+.....+.......||||+.||.... ....+...|-.+|+.+.+
T Consensus 11 ~~~~-v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 11 DARR-VYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred CCCE-EEEECCcccccCceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 5555 67766441 011469999999998765433332222349999998877654 122344578889998876
Q ss_pred ceeEEeeecCcc-----eEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCC
Q 004839 207 EDALLLEESNEN-----VYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 252 (728)
Q Consensus 207 ~~~lv~~~~~~~-----~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~ 252 (728)
...+... .+++ +-..+.+|||||+|++... ...+.|-++|+++.
T Consensus 90 ~~~i~~p-~~p~~~~~~~~~~~~ls~dgk~l~V~n~-~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 90 IADIELP-EGPRFLVGTYPWMTSLTPDNKTLLFYQF-SPSPAVGVVDLEGK 138 (352)
T ss_pred EeEEccC-CCchhhccCccceEEECCCCCEEEEecC-CCCCEEEEEECCCC
Confidence 3333322 2222 1124689999999876543 23467889999873
No 187
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.85 E-value=0.00031 Score=68.61 Aligned_cols=186 Identities=16% Similarity=0.112 Sum_probs=96.6
Q ss_pred ccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCC--CC
Q 004839 496 NPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEI--VK 573 (728)
Q Consensus 496 ~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~--~d 573 (728)
.-++.+.|-|-+.. .|......|-. -+.++.+.++|.+.. .+..-+.|+.+.++.+...-. .-
T Consensus 8 ~~L~cfP~AGGsa~---~fr~W~~~lp~-~iel~avqlPGR~~r-----------~~ep~~~di~~Lad~la~el~~~~~ 72 (244)
T COG3208 8 LRLFCFPHAGGSAS---LFRSWSRRLPA-DIELLAVQLPGRGDR-----------FGEPLLTDIESLADELANELLPPLL 72 (244)
T ss_pred ceEEEecCCCCCHH---HHHHHHhhCCc-hhheeeecCCCcccc-----------cCCcccccHHHHHHHHHHHhccccC
Confidence 34555666553322 23333333322 477999999998853 111234555555555554322 22
Q ss_pred CCcEEEEEeCccHHHHHHHHHhC------CCceeEEEEeCCcccchhhccCCCCCC--Cccccccc-CCCC----CHHHH
Q 004839 574 EHKLAGWGYSAGGLLVAAAINCC------PDLFRAVVLEVPFLDATNTLLYPILPL--IAADYEEF-GYPG----DIDDF 640 (728)
Q Consensus 574 ~~ri~i~G~S~GG~~~~~~~~~~------p~~f~a~v~~~p~~d~~~~~~~~~~~~--~~~~~~~~-g~p~----~~~~~ 640 (728)
-...+++||||||.++--++-+. |.-|-..-..+|..+..... ...+. ......++ |.|. +++.+
T Consensus 73 d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i--~~~~D~~~l~~l~~lgG~p~e~led~El~ 150 (244)
T COG3208 73 DAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQI--HHLDDADFLADLVDLGGTPPELLEDPELM 150 (244)
T ss_pred CCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCc--cCCCHHHHHHHHHHhCCCChHHhcCHHHH
Confidence 25799999999999998887542 22222223344522211100 00000 00011122 4442 22222
Q ss_pred -----------HHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCc
Q 004839 641 -----------HAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN 707 (728)
Q Consensus 641 -----------~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~ 707 (728)
..+..|.=... . .+.+|+..+.|..|..|...+...|.+..+..= ... .-++||++..
T Consensus 151 ~l~LPilRAD~~~~e~Y~~~~~-~-pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~~f-----~l~--~fdGgHFfl~ 219 (244)
T COG3208 151 ALFLPILRADFRALESYRYPPP-A-PLACPIHAFGGEKDHEVSRDELGAWREHTKGDF-----TLR--VFDGGHFFLN 219 (244)
T ss_pred HHHHHHHHHHHHHhcccccCCC-C-CcCcceEEeccCcchhccHHHHHHHHHhhcCCc-----eEE--EecCcceehh
Confidence 22222222222 2 278999999999999998877777776665321 122 3489999754
No 188
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=97.84 E-value=0.00072 Score=69.02 Aligned_cols=100 Identities=25% Similarity=0.346 Sum_probs=65.9
Q ss_pred CCccEEEEEcCCCCCCcCcccHHHHHHHHH-CCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHc--C
Q 004839 494 NQNPGLLHGHGAYGELLDKRWRSELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEK--E 570 (728)
Q Consensus 494 ~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~-~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--~ 570 (728)
.+.|.++.+||-.|+. ..|......|+. .|--|+..|.|-+|.+-.. . .....++...+..+++. +
T Consensus 50 ~~~Pp~i~lHGl~GS~--~Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~-----~----~h~~~~ma~dv~~Fi~~v~~ 118 (315)
T KOG2382|consen 50 ERAPPAIILHGLLGSK--ENWRSVAKNLSRKLGRDVYAVDVRNHGSSPKI-----T----VHNYEAMAEDVKLFIDGVGG 118 (315)
T ss_pred CCCCceEEecccccCC--CCHHHHHHHhcccccCceEEEecccCCCCccc-----c----ccCHHHHHHHHHHHHHHccc
Confidence 4678999999977755 567777777776 4778999999999864211 1 11244444444444432 2
Q ss_pred CCCCCcEEEEEeCccH-HHHHHHHHhCCCceeEEE
Q 004839 571 IVKEHKLAGWGYSAGG-LLVAAAINCCPDLFRAVV 604 (728)
Q Consensus 571 ~~d~~ri~i~G~S~GG-~~~~~~~~~~p~~f~a~v 604 (728)
..--.++.+.|||||| -++++.+...|++..-+|
T Consensus 119 ~~~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rli 153 (315)
T KOG2382|consen 119 STRLDPVVLLGHSMGGVKVAMAETLKKPDLIERLI 153 (315)
T ss_pred ccccCCceecccCcchHHHHHHHHHhcCcccceeE
Confidence 2234689999999999 555555556788654444
No 189
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.84 E-value=0.0042 Score=66.04 Aligned_cols=191 Identities=9% Similarity=0.046 Sum_probs=105.6
Q ss_pred EEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccC----ccceeeeEEEecCCCEEEEEEecCCCCcceeEE
Q 004839 124 AYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP----QAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 199 (728)
Q Consensus 124 ~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~----~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~ 199 (728)
+++.-.++||.|-|||-. |..|+ |+|+|....+.+... ..+.+..+.|+.||++|+-+-..+ .+..+++.
T Consensus 60 ~~vtVAkySPsG~yiASG-D~sG~----vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGr-erfg~~F~ 133 (603)
T KOG0318|consen 60 HQVTVAKYSPSGFYIASG-DVSGK----VRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGR-ERFGHVFL 133 (603)
T ss_pred ceeEEEEeCCCceEEeec-CCcCc----EEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCc-cceeEEEE
Confidence 356677899999988765 66665 999998764433221 145788999999999998874322 23334444
Q ss_pred EECCC---------------------------CC--ceeEEeeecC----------cceEEEEEEcCCCCEEEEEEcCCC
Q 004839 200 SIIGS---------------------------TD--EDALLLEESN----------ENVYVNIRHTKDFHFVCVHTFSTT 240 (728)
Q Consensus 200 ~~l~t---------------------------~~--~~~lv~~~~~----------~~~~~~~~~SpDg~~l~~~~~~~~ 240 (728)
.|-++ +. .....|+.+. ..|.-.+.+||||..++-...+
T Consensus 134 ~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD-- 211 (603)
T KOG0318|consen 134 WDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD-- 211 (603)
T ss_pred ecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCC--
Confidence 44322 11 1122233221 1233468999999876544332
Q ss_pred ceEEEEEeCCCCCCCeEEeee---cCCceEE--EEeecCCEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeec
Q 004839 241 SSKVFLINAADPFSGLTLIWE---CEGLAHC--IVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFID 315 (728)
Q Consensus 241 ~~~l~~~dl~~~~~~~~~l~~---~~~~~~~--~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~ 315 (728)
..+|++|-.+ ++..-... ...+..| .++||+.+|+-.+... ..+|+.+... +-.+++...
T Consensus 212 -gki~iyDGkt--ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk-------t~KIWdVs~~-----slv~t~~~~ 276 (603)
T KOG0318|consen 212 -GKIYIYDGKT--GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK-------TIKIWDVSTN-----SLVSTWPMG 276 (603)
T ss_pred -ccEEEEcCCC--ccEEEEecCCCCccccEEEEEECCCCceEEEecCCc-------eEEEEEeecc-----ceEEEeecC
Confidence 4689999887 34333333 1222333 3457777766544321 2566665432 111222222
Q ss_pred CC-CceEEEEEeeCCEEEEEEec
Q 004839 316 DQ-GLVVEDVDFCKTHMALILRE 337 (728)
Q Consensus 316 ~~-~~~i~~~~~~~~~lv~~~~~ 337 (728)
.. +...-+.-|.+++|+.+...
T Consensus 277 ~~v~dqqvG~lWqkd~lItVSl~ 299 (603)
T KOG0318|consen 277 STVEDQQVGCLWQKDHLITVSLS 299 (603)
T ss_pred CchhceEEEEEEeCCeEEEEEcC
Confidence 11 12334666776666655443
No 190
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.82 E-value=0.00024 Score=70.90 Aligned_cols=141 Identities=11% Similarity=0.093 Sum_probs=89.3
Q ss_pred ceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCC
Q 004839 128 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD 206 (728)
Q Consensus 128 ~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~ 206 (728)
...+||+|++||-..+ +++.|+|.+|=+..++.. .+.+..+.|+.|+-.|+-..+.+. .|...++..+.
T Consensus 13 ~c~fSp~g~yiAs~~~------yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~----~vqvwsl~Qpe 82 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR------YRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDP----KVQVWSLVQPE 82 (447)
T ss_pred ceeECCCCCeeeeeee------eEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccc----eEEEEEeecce
Confidence 3469999999998753 679999999877666543 567889999999988887765432 45555664432
Q ss_pred ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEee-ecCCceEEEEeecCCEEEEEEcCC
Q 004839 207 EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIW-ECEGLAHCIVEHHEGFLYLFTDAA 284 (728)
Q Consensus 207 ~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~-~~~~~~~~~~~~dg~~l~~~tn~~ 284 (728)
---.+-++.++ .....||||||.|+.++.-+ .+|-+..+.+. .-..+. +......+.+.+||+...+.+.++
T Consensus 83 w~ckIdeg~ag--ls~~~WSPdgrhiL~tseF~--lriTVWSL~t~--~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 83 WYCKIDEGQAG--LSSISWSPDGRHILLTSEFD--LRITVWSLNTQ--KGYLLPHPKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred eEEEeccCCCc--ceeeeECCCcceEeeeecce--eEEEEEEeccc--eeEEecccccCceeEEECCCCceeeeeeccc
Confidence 11112222222 24578999999998776533 33444444441 112222 222223456778888888887765
No 191
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.79 E-value=0.04 Score=55.89 Aligned_cols=194 Identities=12% Similarity=0.008 Sum_probs=110.2
Q ss_pred ceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCccceeeeEEEe-cCCCEEEEEEecCCCCcceeEEEECCCCC
Q 004839 128 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWA-KDGQALIYVVTDQNKRPYQIYCSIIGSTD 206 (728)
Q Consensus 128 ~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~Ws-pDg~~l~y~~~~~~~~~~~v~~~~l~t~~ 206 (728)
.+.|.++...|.|+ |..+. .|+.+++++++........ ...+... +|| .|+.+.. ..+.++|+.+++
T Consensus 4 gp~~d~~~g~l~~~-D~~~~---~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g-~l~v~~~------~~~~~~d~~~g~ 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWV-DIPGG---RIYRVDPDTGEVEVIDLPG-PNGMAFDRPDG-RLYVADS------GGIAVVDPDTGK 71 (246)
T ss_dssp EEEEETTTTEEEEE-ETTTT---EEEEEETTTTEEEEEESSS-EEEEEEECTTS-EEEEEET------TCEEEEETTTTE
T ss_pred ceEEECCCCEEEEE-EcCCC---EEEEEECCCCeEEEEecCC-CceEEEEccCC-EEEEEEc------CceEEEecCCCc
Confidence 46788866677666 65554 4899999998765443333 4455565 664 5666532 134555888775
Q ss_pred ceeEEeee-cC--cceEEEEEEcCCCCEEEEEEcCCC----c--eEEEEEeCCCCCCCeEEeeecCC-ceEEEEeecCCE
Q 004839 207 EDALLLEE-SN--ENVYVNIRHTKDFHFVCVHTFSTT----S--SKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGF 276 (728)
Q Consensus 207 ~~~lv~~~-~~--~~~~~~~~~SpDg~~l~~~~~~~~----~--~~l~~~dl~~~~~~~~~l~~~~~-~~~~~~~~dg~~ 276 (728)
...+.... .. ....-++.+.|||+ |+++..... . ..||+++.+. +.+.+..... .....+++|++.
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~---~~~~~~~~~~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDG---KVTVVADGLGFPNGIAFSPDGKT 147 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS---EEEEEEEEESSEEEEEEETTSSE
T ss_pred EEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCC---eEEEEecCcccccceEECCcchh
Confidence 33333221 11 22335788999999 666654332 1 5799999873 3444433322 123456889998
Q ss_pred EEEEEcCCccCCCCCceEEEEeeCCCCCCCCCC---eEEeecCCC-ceEEEEEeeC-CEEEEEEecCCeeEEEEEecC
Q 004839 277 LYLFTDAAKEGQEADNHYLLRCPVDASFPSRTW---ESVFIDDQG-LVVEDVDFCK-THMALILREGRTYRLCSVSLP 349 (728)
Q Consensus 277 l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~li~~~~~-~~i~~~~~~~-~~lv~~~~~~g~~~l~~~~l~ 349 (728)
||+..... .+|++++++ ... ..+ +.++..... ....++.+.. +.|++....+ .+|.+++.+
T Consensus 148 lyv~ds~~--------~~i~~~~~~-~~~-~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~--~~I~~~~p~ 213 (246)
T PF08450_consen 148 LYVADSFN--------GRIWRFDLD-ADG-GELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG--GRIVVFDPD 213 (246)
T ss_dssp EEEEETTT--------TEEEEEEEE-TTT-CCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT--TEEEEEETT
T ss_pred eeeccccc--------ceeEEEecc-ccc-cceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC--CEEEEECCC
Confidence 88754332 458888875 211 112 223222222 2478888875 6777765543 467888865
No 192
>PRK04940 hypothetical protein; Provisional
Probab=97.79 E-value=0.00059 Score=64.31 Aligned_cols=119 Identities=13% Similarity=0.011 Sum_probs=71.4
Q ss_pred CcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCCCCcccccccCCCCCHHHHHHHHccCccccccc
Q 004839 575 HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQK 654 (728)
Q Consensus 575 ~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sP~~~i~~ 654 (728)
++++++|.|+|||.+.+++.++. . .+|+..|.+.....+.. .+..... |. -..++..+.++ +.+
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P~~~L~~-~ig~~~~-y~----~~~~~h~~eL~----~~~--- 123 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFPEENMEG-KIDRPEE-YA----DIATKCVTNFR----EKN--- 123 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCChHHHHHH-HhCCCcc-hh----hhhHHHHHHhh----hcC---
Confidence 46999999999999999999865 3 45667887765432211 1110011 11 11222333343 111
Q ss_pred CCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCchhhhHHHHHHHHHHHH
Q 004839 655 DVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLI 723 (728)
Q Consensus 655 ~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~afl~ 723 (728)
.--.+++....|+...+.++.+.++.. -.+.+.+++.|.+..-+..+ ..+.+|+.
T Consensus 124 --p~r~~vllq~gDEvLDyr~a~~~y~~~---------y~~~v~~GGdH~f~~fe~~l---~~I~~F~~ 178 (180)
T PRK04940 124 --RDRCLVILSRNDEVLDSQRTAEELHPY---------YEIVWDEEQTHKFKNISPHL---QRIKAFKT 178 (180)
T ss_pred --cccEEEEEeCCCcccCHHHHHHHhccC---------ceEEEECCCCCCCCCHHHHH---HHHHHHHh
Confidence 111488889999999988887766433 12344788999987644443 44567764
No 193
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.75 E-value=0.019 Score=56.66 Aligned_cols=195 Identities=13% Similarity=0.068 Sum_probs=113.0
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
.++....|+||++ |++...++ .++++|+++|+..+... ...+-.+++++|++.|+-.+.| ..|...++
T Consensus 65 ~v~dv~~s~dg~~-alS~swD~----~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrD-----kTiklwnt 134 (315)
T KOG0279|consen 65 FVSDVVLSSDGNF-ALSASWDG----TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRD-----KTIKLWNT 134 (315)
T ss_pred EecceEEccCCce-EEeccccc----eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCc-----ceeeeeee
Confidence 5788899999985 46555544 49999999998665433 3367889999999998654332 34555555
Q ss_pred CCCCceeEEeeecCcceEEEEEEcCCCC-EEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCce--EEEEeecCCEEEE
Q 004839 203 GSTDEDALLLEESNENVYVNIRHTKDFH-FVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA--HCIVEHHEGFLYL 279 (728)
Q Consensus 203 ~t~~~~~lv~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~--~~~~~~dg~~l~~ 279 (728)
-.... ..+.++....+..-+.|+|... .++++..-+ .-|-+.|+.+ -+.+.-.....+. ...+++||.....
T Consensus 135 ~g~ck-~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D--ktvKvWnl~~--~~l~~~~~gh~~~v~t~~vSpDGslcas 209 (315)
T KOG0279|consen 135 LGVCK-YTIHEDSHREWVSCVRFSPNESNPIIVSASWD--KTVKVWNLRN--CQLRTTFIGHSGYVNTVTVSPDGSLCAS 209 (315)
T ss_pred cccEE-EEEecCCCcCcEEEEEEcCCCCCcEEEEccCC--ceEEEEccCC--cchhhccccccccEEEEEECCCCCEEec
Confidence 44321 1122222133455689999863 333333322 2356667766 3333333333332 2356788775443
Q ss_pred EEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecCCC
Q 004839 280 FTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLP 351 (728)
Q Consensus 280 ~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~ 351 (728)
..+ ...++..+++ . .+. +..-+....+..+...++...+....+.. |.+.++.++
T Consensus 210 -Ggk--------dg~~~LwdL~-~--~k~---lysl~a~~~v~sl~fspnrywL~~at~~s--IkIwdl~~~ 264 (315)
T KOG0279|consen 210 -GGK--------DGEAMLWDLN-E--GKN---LYSLEAFDIVNSLCFSPNRYWLCAATATS--IKIWDLESK 264 (315)
T ss_pred -CCC--------CceEEEEEcc-C--Cce---eEeccCCCeEeeEEecCCceeEeeccCCc--eEEEeccch
Confidence 111 3456777766 1 122 22233345677777778877777655433 667777653
No 194
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.75 E-value=0.0049 Score=65.58 Aligned_cols=193 Identities=14% Similarity=0.147 Sum_probs=107.9
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-----cceeeeEEEecCCCEEEEEEecCCCCcceeEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-----AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 199 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-----~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~ 199 (728)
.+..+++||||+++|-.. .+| .++++|-++|+.+-... .+.+..+.||||+++|+-.+.| ...+||
T Consensus 192 FV~~VRysPDG~~Fat~g-sDg----ki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD---kt~KIW- 262 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAG-SDG----KIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD---KTIKIW- 262 (603)
T ss_pred ceeeEEECCCCCeEEEec-CCc----cEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC---ceEEEE-
Confidence 577899999999988663 344 39999999998664322 4578899999999999877544 233555
Q ss_pred EECCCCC-ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCceE-EEEeecCCEE
Q 004839 200 SIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAH-CIVEHHEGFL 277 (728)
Q Consensus 200 ~~l~t~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~-~~~~~dg~~l 277 (728)
|+.+.. ..+++....-....++.-|.. + .|+..+.+. -|-.++++++. .++.+......+. ..+++|+++|
T Consensus 263 -dVs~~slv~t~~~~~~v~dqqvG~lWqk-d-~lItVSl~G---~in~ln~~d~~-~~~~i~GHnK~ITaLtv~~d~~~i 335 (603)
T KOG0318|consen 263 -DVSTNSLVSTWPMGSTVEDQQVGCLWQK-D-HLITVSLSG---TINYLNPSDPS-VLKVISGHNKSITALTVSPDGKTI 335 (603)
T ss_pred -EeeccceEEEeecCCchhceEEEEEEeC-C-eEEEEEcCc---EEEEecccCCC-hhheecccccceeEEEEcCCCCEE
Confidence 454443 344444333222346667762 3 333333322 24556666643 3344433333332 3455667554
Q ss_pred EEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeC-CEEEEEEecCCeeEEEEEecC
Q 004839 278 YLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLP 349 (728)
Q Consensus 278 ~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~-~~lv~~~~~~g~~~l~~~~l~ 349 (728)
|- ...+ ..|...+.. .+.-..+........|..+...+ +.++.+.-++ .|.++++.
T Consensus 336 ~S-gsyD--------G~I~~W~~~----~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd---~l~~~~~~ 392 (603)
T KOG0318|consen 336 YS-GSYD--------GHINSWDSG----SGTSDRLAGKGHTNQIKGMAASESGELFTIGWDD---TLRVISLK 392 (603)
T ss_pred Ee-eccC--------ceEEEEecC----CccccccccccccceEEEEeecCCCcEEEEecCC---eEEEEecc
Confidence 43 3333 235555543 11222233333445677777776 5666554444 35666553
No 195
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.74 E-value=0.00015 Score=72.97 Aligned_cols=100 Identities=29% Similarity=0.329 Sum_probs=66.9
Q ss_pred ccEEEEEcCCCCCCcCcccHHHHHHHHH---CCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCC
Q 004839 496 NPGLLHGHGAYGELLDKRWRSELKSLLD---RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIV 572 (728)
Q Consensus 496 ~P~vv~~hGg~~~~~~~~~~~~~~~l~~---~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 572 (728)
.|.++++||.++... .|......+.. + |.|+.+|.||+|... . . ..........+..++++-..
T Consensus 21 ~~~i~~~hg~~~~~~--~~~~~~~~~~~~~~~-~~~~~~d~~g~g~s~-~---~------~~~~~~~~~~~~~~~~~~~~ 87 (282)
T COG0596 21 GPPLVLLHGFPGSSS--VWRPVFKVLPALAAR-YRVIAPDLRGHGRSD-P---A------GYSLSAYADDLAALLDALGL 87 (282)
T ss_pred CCeEEEeCCCCCchh--hhHHHHHHhhccccc-eEEEEecccCCCCCC-c---c------cccHHHHHHHHHHHHHHhCC
Confidence 358999999876442 23332222322 3 999999999998764 0 0 11222223444444443222
Q ss_pred CCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 004839 573 KEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 610 (728)
Q Consensus 573 d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~ 610 (728)
.++.+.|+|+||.++..++.++|++++++|+..+..
T Consensus 88 --~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~ 123 (282)
T COG0596 88 --EKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAP 123 (282)
T ss_pred --CceEEEEecccHHHHHHHHHhcchhhheeeEecCCC
Confidence 349999999999999999999999999999888654
No 196
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=97.71 E-value=7.2e-05 Score=85.63 Aligned_cols=127 Identities=17% Similarity=0.125 Sum_probs=83.4
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCCCC-CcCccc--HHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccC-CCCCc
Q 004839 480 VPLTIIYSPKYKKENQNPGLLHGHGAYGE-LLDKRW--RSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT-KKLNS 555 (728)
Q Consensus 480 i~~~l~~p~~~~~~~~~P~vv~~hGg~~~-~~~~~~--~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~-~~~~~ 555 (728)
+...++.|......+ .|++|++|||.-. .....| ......+..+..+|+.++||-+- +| |...+... .+-..
T Consensus 97 LylNV~tp~~~~~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~-lG--F~st~d~~~~gN~g 172 (545)
T KOG1516|consen 97 LYLNVYTPQGCSESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGP-LG--FLSTGDSAAPGNLG 172 (545)
T ss_pred ceEEEeccCCCccCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEeccccee-ce--eeecCCCCCCCccc
Confidence 455567776543223 8999999997321 111122 22234555678999999999542 22 22121111 34456
Q ss_pred HHHHHHHHHHHHHc--CC-CCCCcEEEEEeCccHHHHHHHHHh--CCCceeEEEEeCCcc
Q 004839 556 IKDFISCARFLIEK--EI-VKEHKLAGWGYSAGGLLVAAAINC--CPDLFRAVVLEVPFL 610 (728)
Q Consensus 556 ~~D~~~~~~~l~~~--~~-~d~~ri~i~G~S~GG~~~~~~~~~--~p~~f~a~v~~~p~~ 610 (728)
+.|.+.+++|+.+. .+ -||++|.++|+|+||..+..++.. ...+|+.+|..+|..
T Consensus 173 l~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 173 LFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 78999999999865 11 499999999999999999887763 125898888887753
No 197
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.70 E-value=0.001 Score=69.51 Aligned_cols=199 Identities=13% Similarity=0.092 Sum_probs=118.7
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccC-ccceeeeEEEecCCCEEEEEEecCCCCcceeEEEECC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP-QAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 203 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~ 203 (728)
.+..+.+|||+++||+.- ..| .|+++...|++.+... +.+.+..+.|+.||+.|+.+. ...+||..||.
T Consensus 305 ~~e~FeVShd~~fia~~G-~~G----~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~-----~~GeV~v~nl~ 374 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAG-NNG----HIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASG-----GTGEVYVWNLR 374 (514)
T ss_pred hhheeEecCCCCeEEEcc-cCc----eEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEc-----CCceEEEEecC
Confidence 566788999999999873 334 4999999999866533 367889999999998887663 23489999998
Q ss_pred CCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC--CCCCeEEeeecCC----ceEEEEeecCCEE
Q 004839 204 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD--PFSGLTLIWECEG----LAHCIVEHHEGFL 277 (728)
Q Consensus 204 t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~--~~~~~~~l~~~~~----~~~~~~~~dg~~l 277 (728)
... -.-.+.+.+.-.-..++.|++|+|++.-+.++ -|=++|.++ ..+.++++..-.. -....++||...|
T Consensus 375 ~~~-~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~G---iVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL 450 (514)
T KOG2055|consen 375 QNS-CLHRFVDDGSVHGTSLCISLNGSYLATGSDSG---IVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL 450 (514)
T ss_pred Ccc-eEEEEeecCccceeeeeecCCCceEEeccCcc---eEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence 763 11123333333345678899999887665543 122333322 1234555432221 1223567888888
Q ss_pred EEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeC-CEEEEEEecCCeeEEEEE
Q 004839 278 YLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSV 346 (728)
Q Consensus 278 ~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~-~~lv~~~~~~g~~~l~~~ 346 (728)
+|.++...+ ..+|+-++-- .--++|-+. ..+-..+..++... ...+.+.++.|...|+.+
T Consensus 451 AiaS~~~kn-----alrLVHvPS~--TVFsNfP~~--n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 451 AIASRVKKN-----ALRLVHVPSC--TVFSNFPTS--NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred hhhhhcccc-----ceEEEeccce--eeeccCCCC--CCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 888876543 2566655422 011344321 11112234445444 344555677777776654
No 198
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.68 E-value=0.0051 Score=66.19 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=87.7
Q ss_pred eceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCC
Q 004839 127 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 205 (728)
Q Consensus 127 ~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~ 205 (728)
....+||||+++ |..+++| .|.++|+.+++.+.... -....+++.|+||++++.+... +..+..+|..+.
T Consensus 40 ~~~~~s~Dgr~~-yv~~rdg----~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~----~~~v~v~D~~tl 110 (369)
T PF02239_consen 40 AGLKFSPDGRYL-YVANRDG----TVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYE----PGTVSVIDAETL 110 (369)
T ss_dssp EEEE-TT-SSEE-EEEETTS----EEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEE----TTEEEEEETTT-
T ss_pred eEEEecCCCCEE-EEEcCCC----eEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecC----CCceeEeccccc
Confidence 445689999986 5456655 49999999998665433 3356789999999988766443 347888887765
Q ss_pred CceeEEe-eec----CcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCe--EEeeecCCceEEEEeecCCEEE
Q 004839 206 DEDALLL-EES----NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGL--TLIWECEGLAHCIVEHHEGFLY 278 (728)
Q Consensus 206 ~~~~lv~-~~~----~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~--~~l~~~~~~~~~~~~~dg~~l~ 278 (728)
+.-..+. ... ...-...+.-|+++...+++..+ ..++|++|.++.. .+ +.+.....-....+++++++|+
T Consensus 111 e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd--~~~I~vVdy~d~~-~~~~~~i~~g~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 111 EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD--TGEIWVVDYSDPK-NLKVTTIKVGRFPHDGGFDPDGRYFL 187 (369)
T ss_dssp -EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT--TTEEEEEETTTSS-CEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred cceeecccccccccccCCCceeEEecCCCCEEEEEEcc--CCeEEEEEecccc-ccceeeecccccccccccCcccceee
Confidence 4211111 111 01112345668888876666554 4589999987742 22 1222222223456778888877
Q ss_pred EEEcCCccCCCCCceEEEEeeCC
Q 004839 279 LFTDAAKEGQEADNHYLLRCPVD 301 (728)
Q Consensus 279 ~~tn~~~~~~~~~~~~l~~~~~~ 301 (728)
...+.. -+|..++..
T Consensus 188 va~~~s--------n~i~viD~~ 202 (369)
T PF02239_consen 188 VAANGS--------NKIAVIDTK 202 (369)
T ss_dssp EEEGGG--------TEEEEEETT
T ss_pred eccccc--------ceeEEEeec
Confidence 755543 146666654
No 199
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.67 E-value=0.064 Score=54.22 Aligned_cols=112 Identities=17% Similarity=0.119 Sum_probs=73.1
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
.+..+.|+|||++|+.... +| .|+++++.+++...... ......+.|+|+++.|+.... ...|+.+++
T Consensus 11 ~i~~~~~~~~~~~l~~~~~-~g----~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----~~~i~i~~~ 80 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSG-DG----TIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS-----DKTIRLWDL 80 (289)
T ss_pred CEEEEEEcCCCCEEEEeec-Cc----EEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC-----CCeEEEEEc
Confidence 5677889999999988753 33 48899998876433222 234568999999987776543 346888888
Q ss_pred CCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 203 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 203 ~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
.+++.. ..+.... .....+.++++++.++.... ...++++|+.+
T Consensus 81 ~~~~~~-~~~~~~~-~~i~~~~~~~~~~~~~~~~~---~~~i~~~~~~~ 124 (289)
T cd00200 81 ETGECV-RTLTGHT-SYVSSVAFSPDGRILSSSSR---DKTIKVWDVET 124 (289)
T ss_pred Ccccce-EEEeccC-CcEEEEEEcCCCCEEEEecC---CCeEEEEECCC
Confidence 765321 1222222 12356789999876655442 34688888875
No 200
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=97.63 E-value=0.0048 Score=57.14 Aligned_cols=108 Identities=15% Similarity=0.099 Sum_probs=79.8
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCCCCcccccc
Q 004839 551 KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEE 630 (728)
Q Consensus 551 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~ 630 (728)
|-....+|.++.++.-+..- ++.+.+++||.|+.+++..+.+....++++++.+|+- +.+
T Consensus 38 w~~P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd-~~~---------------- 97 (181)
T COG3545 38 WEAPVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPD-VSR---------------- 97 (181)
T ss_pred CCCCCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCC-ccc----------------
Confidence 44568899999888776542 4569999999999999999887666889999888842 111
Q ss_pred cCCCCCHHHHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHh
Q 004839 631 FGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRE 685 (728)
Q Consensus 631 ~g~p~~~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~ 685 (728)
|. .....+..++|+.... ...|.+++...+|+.|++++++.++++.-.
T Consensus 98 ---~~--~~~~~~~tf~~~p~~~--lpfps~vvaSrnDp~~~~~~a~~~a~~wgs 145 (181)
T COG3545 98 ---PE--IRPKHLMTFDPIPREP--LPFPSVVVASRNDPYVSYEHAEDLANAWGS 145 (181)
T ss_pred ---cc--cchhhccccCCCcccc--CCCceeEEEecCCCCCCHHHHHHHHHhccH
Confidence 00 0112334556665443 578999999999999999999999998865
No 201
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=97.63 E-value=0.0018 Score=69.52 Aligned_cols=103 Identities=20% Similarity=0.199 Sum_probs=65.7
Q ss_pred CCccEEEE----EcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHc
Q 004839 494 NQNPGLLH----GHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEK 569 (728)
Q Consensus 494 ~~~P~vv~----~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 569 (728)
.+.|.||. +||..-..... ..++-..+..|..|+++-+.-...- ..+++|+..+....+++
T Consensus 67 ~krP~vViDPRAGHGpGIGGFK~--dSevG~AL~~GHPvYFV~F~p~P~p-------------gQTl~DV~~ae~~Fv~~ 131 (581)
T PF11339_consen 67 TKRPFVVIDPRAGHGPGIGGFKP--DSEVGVALRAGHPVYFVGFFPEPEP-------------GQTLEDVMRAEAAFVEE 131 (581)
T ss_pred CCCCeEEeCCCCCCCCCccCCCc--ccHHHHHHHcCCCeEEEEecCCCCC-------------CCcHHHHHHHHHHHHHH
Confidence 45687774 46521111111 3344445566999888877644432 23788887765544432
Q ss_pred ----CCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEE-EeCCcccc
Q 004839 570 ----EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVV-LEVPFLDA 612 (728)
Q Consensus 570 ----~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v-~~~p~~d~ 612 (728)
.- +..|.+++|.+.||.+++.+++.+|+++.-+| +.+|+.-+
T Consensus 132 V~~~hp-~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPlsyw 178 (581)
T PF11339_consen 132 VAERHP-DAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLSYW 178 (581)
T ss_pred HHHhCC-CCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCcccc
Confidence 22 33499999999999999999999999986555 45565443
No 202
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=97.61 E-value=0.0046 Score=65.49 Aligned_cols=145 Identities=14% Similarity=0.085 Sum_probs=100.1
Q ss_pred cCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeC-Ccccchhhcc-----CC-CCCCCcccccccCCC---CCHH
Q 004839 569 KEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEV-PFLDATNTLL-----YP-ILPLIAADYEEFGYP---GDID 638 (728)
Q Consensus 569 ~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~-p~~d~~~~~~-----~~-~~~~~~~~~~~~g~p---~~~~ 638 (728)
+...+.++-+|.|.|==|..+..+++ ...|++|+|..+ +++|+...+. +. ..+.....|..-|.. ..++
T Consensus 166 ~~~~~i~~FvV~GaSKRGWTtWltaa-~D~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~l~tp~ 244 (367)
T PF10142_consen 166 KFGVNIEKFVVTGASKRGWTTWLTAA-VDPRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAFQDYYNEGITQQLDTPE 244 (367)
T ss_pred hcCCCccEEEEeCCchHhHHHHHhhc-cCcceeEEeeEEEccCCcHHHHHHHHHHhCCCCccchhhhhHhCchhhcCCHH
Confidence 34567899999999999999988888 567888887654 4555543221 12 333333333333322 2344
Q ss_pred HHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCchhhhHHHHHHH
Q 004839 639 DFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALE 718 (728)
Q Consensus 639 ~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~ 718 (728)
..+.+.-.+|+.+.++ .+.|-++|.+..|+--.+..+.-++..|+.. +.+.+.|+++|++.. .......
T Consensus 245 f~~L~~ivDP~~Y~~r-L~~PK~ii~atgDeFf~pD~~~~y~d~L~G~------K~lr~vPN~~H~~~~----~~~~~~l 313 (367)
T PF10142_consen 245 FDKLMQIVDPYSYRDR-LTMPKYIINATGDEFFVPDSSNFYYDKLPGE------KYLRYVPNAGHSLIG----SDVVQSL 313 (367)
T ss_pred HHHHHHhcCHHHHHHh-cCccEEEEecCCCceeccCchHHHHhhCCCC------eeEEeCCCCCcccch----HHHHHHH
Confidence 5556667899999987 7999999999999888888999999999863 345558999998765 1223335
Q ss_pred HHHHHHh
Q 004839 719 TAFLIKM 725 (728)
Q Consensus 719 ~afl~~~ 725 (728)
.+|+...
T Consensus 314 ~~f~~~~ 320 (367)
T PF10142_consen 314 RAFYNRI 320 (367)
T ss_pred HHHHHHH
Confidence 6777654
No 203
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=97.59 E-value=0.0003 Score=77.99 Aligned_cols=114 Identities=20% Similarity=0.202 Sum_probs=69.5
Q ss_pred ccEEEEEcCCCCCCcCccc--HHHHHHHHH-CCeEEEEEcCCCCCCCCCccccccccC----CCCCcHHHHHHHHHHHHH
Q 004839 496 NPGLLHGHGAYGELLDKRW--RSELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRT----KKLNSIKDFISCARFLIE 568 (728)
Q Consensus 496 ~P~vv~~hGg~~~~~~~~~--~~~~~~l~~-~Gy~v~~~d~RG~g~~G~~~~~~~~~~----~~~~~~~D~~~~~~~l~~ 568 (728)
.|++|++-|. +. ....+ ......||+ .|-.|++...|-.|.+- .+....... .-...++|+...++++..
T Consensus 29 gpifl~~ggE-~~-~~~~~~~~~~~~~lA~~~~a~~v~lEHRyYG~S~-P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~ 105 (434)
T PF05577_consen 29 GPIFLYIGGE-GP-IEPFWINNGFMWELAKEFGALVVALEHRYYGKSQ-PFGDLSTENLRYLTSEQALADLAYFIRYVKK 105 (434)
T ss_dssp SEEEEEE--S-S--HHHHHHH-HHHHHHHHHHTEEEEEE--TTSTTB--TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCC-Cc-cchhhhcCChHHHHHHHcCCcEEEeehhhhcCCC-CccccchhhHHhcCHHHHHHHHHHHHHHHHH
Confidence 6988888553 22 11111 123455665 59999999999877541 222211111 123357888888888875
Q ss_pred cC-CCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccc
Q 004839 569 KE-IVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDA 612 (728)
Q Consensus 569 ~~-~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~ 612 (728)
+- ..+..++.++|+||||.|++|+-.++|++|.|+++.++++..
T Consensus 106 ~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~a 150 (434)
T PF05577_consen 106 KYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQA 150 (434)
T ss_dssp HTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CCH
T ss_pred hhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceeee
Confidence 43 335569999999999999999999999999999998876653
No 204
>PTZ00420 coronin; Provisional
Probab=97.58 E-value=0.0094 Score=67.25 Aligned_cols=149 Identities=10% Similarity=0.068 Sum_probs=88.1
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccC-ccceeeeEEEecCCCEEEEEEecCCCCcceeEEEECC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP-QAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 203 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~ 203 (728)
.+..+.|+|++..++.+...+| .|.|+|+.+++..... ....+..+.|+|||+.|+-+..+ ..|.++|+.
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~Dg----tIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D-----~~IrIwD~R 197 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDS----FVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPR 197 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCC----eEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecC-----CEEEEEECC
Confidence 5778899999998766654444 4999999998754321 23457889999999977654322 367888887
Q ss_pred CCCceeEEeeecCcc----eEEEEEEcCCCCEEEEEEcCCC-ceEEEEEeCCCCCCCeEEeeec-CCc-eEEEEeecCCE
Q 004839 204 STDEDALLLEESNEN----VYVNIRHTKDFHFVCVHTFSTT-SSKVFLINAADPFSGLTLIWEC-EGL-AHCIVEHHEGF 276 (728)
Q Consensus 204 t~~~~~lv~~~~~~~----~~~~~~~SpDg~~l~~~~~~~~-~~~l~~~dl~~~~~~~~~l~~~-~~~-~~~~~~~dg~~ 276 (728)
++.. ...+...... .+....+++|+++|+....++. ..+|.+.|+.........+.-. ..+ ....++++.+.
T Consensus 198 sg~~-i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~ 276 (568)
T PTZ00420 198 KQEI-ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL 276 (568)
T ss_pred CCcE-EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC
Confidence 7642 1122222211 1111245789998877665543 3579999987532222222111 112 23344555565
Q ss_pred EEEEEcC
Q 004839 277 LYLFTDA 283 (728)
Q Consensus 277 l~~~tn~ 283 (728)
+|+....
T Consensus 277 l~lsGkG 283 (568)
T PTZ00420 277 IYLIGKG 283 (568)
T ss_pred EEEEEEC
Confidence 6655443
No 205
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.54 E-value=0.0076 Score=58.38 Aligned_cols=147 Identities=15% Similarity=0.177 Sum_probs=88.9
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc----cceeeeEEEecCCCEEEEEEecCC---------
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAKDGQALIYVVTDQN--------- 191 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg~~l~y~~~~~~--------- 191 (728)
++....++||++.||-.. ..+|+++|+.++..-++.. ..++..+.|--|||+.|-...|..
T Consensus 42 qVNrLeiTpdk~~LAaa~------~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~ 115 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAAAG------NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL 115 (311)
T ss_pred ceeeEEEcCCcchhhhcc------CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc
Confidence 677888999999998763 2469999999998654332 246788899999998865433221
Q ss_pred ---------------------------CCcceeEEEECCCCC-ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceE
Q 004839 192 ---------------------------KRPYQIYCSIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSK 243 (728)
Q Consensus 192 ---------------------------~~~~~v~~~~l~t~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 243 (728)
.+...|+..||+... ...++ .|.+ .+..++...|||++++-..+ ++ .
T Consensus 116 ~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li-Pe~~-~~i~sl~v~~dgsml~a~nn-kG--~ 190 (311)
T KOG0315|consen 116 SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI-PEDD-TSIQSLTVMPDGSMLAAANN-KG--N 190 (311)
T ss_pred ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC-CCCC-cceeeEEEcCCCcEEEEecC-Cc--c
Confidence 012346666776654 33333 2222 34457788999999865444 33 3
Q ss_pred EEEEeCCCC--CCCeEEeeecCCc----eEEEEeecCCEEEEEEc
Q 004839 244 VFLINAADP--FSGLTLIWECEGL----AHCIVEHHEGFLYLFTD 282 (728)
Q Consensus 244 l~~~dl~~~--~~~~~~l~~~~~~----~~~~~~~dg~~l~~~tn 282 (728)
.|+.++-+. ..++.++..-... ...-++||+++|+-.+.
T Consensus 191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred EEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence 555555432 2234444433222 22355788887665443
No 206
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.53 E-value=0.013 Score=63.21 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=62.0
Q ss_pred EEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCCceeEEeeec
Q 004839 138 LAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEES 215 (728)
Q Consensus 138 lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~~lv~~~~ 215 (728)
|.|...++.+ +|.|+|.++.+.+.... ........++||||++|.+ .. ...|-.+|+.+.+.-..+-.
T Consensus 7 l~~V~~~~~~---~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~-~r----dg~vsviD~~~~~~v~~i~~-- 76 (369)
T PF02239_consen 7 LFYVVERGSG---SVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVA-NR----DGTVSVIDLATGKVVATIKV-- 76 (369)
T ss_dssp EEEEEEGGGT---EEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEE-ET----TSEEEEEETTSSSEEEEEE---
T ss_pred EEEEEecCCC---EEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEE-cC----CCeEEEEECCcccEEEEEec--
Confidence 4555554433 49999999988665432 2234567899999987765 32 24799999988762222211
Q ss_pred CcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 216 NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 216 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
...-.++++|+|||++++..... +.+.++|.++
T Consensus 77 -G~~~~~i~~s~DG~~~~v~n~~~--~~v~v~D~~t 109 (369)
T PF02239_consen 77 -GGNPRGIAVSPDGKYVYVANYEP--GTVSVIDAET 109 (369)
T ss_dssp -SSEEEEEEE--TTTEEEEEEEET--TEEEEEETTT
T ss_pred -CCCcceEEEcCCCCEEEEEecCC--CceeEecccc
Confidence 11234678999999998766532 4688899887
No 207
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.52 E-value=0.0012 Score=67.04 Aligned_cols=114 Identities=11% Similarity=0.105 Sum_probs=75.5
Q ss_pred eEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeE-E
Q 004839 123 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIY-C 199 (728)
Q Consensus 123 ~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~-~ 199 (728)
...+..++|.+||..++=++ . |+ ..|.|+|+++|..+++.. .++++.+.|||||..||-.+.|. ...|| .
T Consensus 195 h~pVtsmqwn~dgt~l~tAS-~-gs--ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~da---vfrlw~e 267 (445)
T KOG2139|consen 195 HNPVTSMQWNEDGTILVTAS-F-GS--SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDA---VFRLWQE 267 (445)
T ss_pred CceeeEEEEcCCCCEEeecc-c-Cc--ceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccc---eeeeehh
Confidence 34688899999999887654 2 22 569999999998877753 45788899999999998876542 22344 2
Q ss_pred EECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCC
Q 004839 200 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAA 250 (728)
Q Consensus 200 ~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~ 250 (728)
+..-+. + +-+.. ........|||+|++|+|..... ..||.+...
T Consensus 268 ~q~wt~-e-rw~lg---sgrvqtacWspcGsfLLf~~sgs--p~lysl~f~ 311 (445)
T KOG2139|consen 268 NQSWTK-E-RWILG---SGRVQTACWSPCGSFLLFACSGS--PRLYSLTFD 311 (445)
T ss_pred ccccee-c-ceecc---CCceeeeeecCCCCEEEEEEcCC--ceEEEEeec
Confidence 222221 1 22211 11334567999999999988743 356655543
No 208
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.52 E-value=0.00075 Score=69.43 Aligned_cols=136 Identities=20% Similarity=0.184 Sum_probs=85.9
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCcc---ceeeeEEEecCCCEEEEEEecCCCCcceeEEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQA---VRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 201 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~---~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~ 201 (728)
.+..+.||||.++|.- .+-+| .++++|+.+|+.+..... ....+-+|-|||..++-...| ..++..+
T Consensus 271 ~V~yi~wSPDdryLla---Cg~~e--~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d-----r~i~~wd 340 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYLLA---CGFDE--VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD-----RTIIMWD 340 (519)
T ss_pred ceEEEEECCCCCeEEe---cCchH--heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC-----CcEEEec
Confidence 6788899999998753 22222 289999999987665432 356788999999987665333 3577777
Q ss_pred CCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCceEEEEeecCCE
Q 004839 202 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGF 276 (728)
Q Consensus 202 l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~dg~~ 276 (728)
++..... -.+.....-..+++.++||++++.... ..++.+++.++.. ....+.....-....++.|++.
T Consensus 341 lDgn~~~--~W~gvr~~~v~dlait~Dgk~vl~v~~---d~~i~l~~~e~~~-dr~lise~~~its~~iS~d~k~ 409 (519)
T KOG0293|consen 341 LDGNILG--NWEGVRDPKVHDLAITYDGKYVLLVTV---DKKIRLYNREARV-DRGLISEEQPITSFSISKDGKL 409 (519)
T ss_pred CCcchhh--cccccccceeEEEEEcCCCcEEEEEec---ccceeeechhhhh-hhccccccCceeEEEEcCCCcE
Confidence 7543211 111112223456889999999987764 3467888877621 1223444444445667776663
No 209
>PTZ00420 coronin; Provisional
Probab=97.48 E-value=0.076 Score=60.07 Aligned_cols=113 Identities=9% Similarity=0.060 Sum_probs=72.8
Q ss_pred EeeceeeCCC-CCEEEEEEEcCCCcEEEEEEEECCCCce-ec--------cC-ccceeeeEEEecCCCEEEEEEecCCCC
Q 004839 125 YEELSEVSPD-HKFLAYTMYDKDNDYFTLSVRNLNSGAL-CS--------KP-QAVRVSNIAWAKDGQALIYVVTDQNKR 193 (728)
Q Consensus 125 ~~~~~~~SPD-G~~lA~~~~~~g~e~~~l~v~dl~tg~~-~~--------~~-~~~~~~~~~WspDg~~l~y~~~~~~~~ 193 (728)
.+..++|||+ +.+||-. ..+| .|+|+|+.++.. .. +. ....+..++|+|++..++.+...+
T Consensus 76 ~V~~lafsP~~~~lLASg-S~Dg----tIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D--- 147 (568)
T PTZ00420 76 SILDLQFNPCFSEILASG-SEDL----TIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD--- 147 (568)
T ss_pred CEEEEEEcCCCCCEEEEE-eCCC----eEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC---
Confidence 5778899997 6666554 3444 499999986532 10 11 134578899999998877664432
Q ss_pred cceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCC
Q 004839 194 PYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 252 (728)
Q Consensus 194 ~~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~ 252 (728)
..|.+.|+.+++.. ..+... .....+.|+|||+.|+..+.+ ..|.++|+.++
T Consensus 148 -gtIrIWDl~tg~~~-~~i~~~--~~V~SlswspdG~lLat~s~D---~~IrIwD~Rsg 199 (568)
T PTZ00420 148 -SFVNIWDIENEKRA-FQINMP--KKLSSLKWNIKGNLLSGTCVG---KHMHIIDPRKQ 199 (568)
T ss_pred -CeEEEEECCCCcEE-EEEecC--CcEEEEEECCCCCEEEEEecC---CEEEEEECCCC
Confidence 36777888776421 122212 224578999999988655432 35888898873
No 210
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.46 E-value=0.095 Score=54.38 Aligned_cols=246 Identities=12% Similarity=0.104 Sum_probs=121.2
Q ss_pred eeceeeCCCCCEEEEEEE-----cCCCcEEEEEEEECCCCceeccCc-c--------ceeeeEEEecCCCEEEEEEecCC
Q 004839 126 EELSEVSPDHKFLAYTMY-----DKDNDYFTLSVRNLNSGALCSKPQ-A--------VRVSNIAWAKDGQALIYVVTDQN 191 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~-----~~g~e~~~l~v~dl~tg~~~~~~~-~--------~~~~~~~WspDg~~l~y~~~~~~ 191 (728)
.+.+.+||||+.+..... ..|...--|-++|.+|=....... + .....+..|+|||++|+.....
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP- 116 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP- 116 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS-
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCC-
Confidence 356779999999975322 345545568899998854332111 1 1234579999999888764432
Q ss_pred CCcceeEEEECCCCCc-e-------eEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecC
Q 004839 192 KRPYQIYCSIIGSTDE-D-------ALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE 263 (728)
Q Consensus 192 ~~~~~v~~~~l~t~~~-~-------~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~ 263 (728)
...|=.+|+...+- . .++|.-.+..|+ ....||+.+.+.....+....- ...++...
T Consensus 117 --a~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~---~lC~DGsl~~v~Ld~~Gk~~~~----------~t~~F~~~ 181 (342)
T PF06433_consen 117 --ATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFS---MLCGDGSLLTVTLDADGKEAQK----------STKVFDPD 181 (342)
T ss_dssp --SEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEE---EEETTSCEEEEEETSTSSEEEE----------EEEESSTT
T ss_pred --CCeEEEEECCCCceeeeecCCCEEEEEecCCCceE---EEecCCceEEEEECCCCCEeEe----------eccccCCC
Confidence 34677888876531 1 112222222332 3456676666555543321100 01111111
Q ss_pred Cc---eEEEEeecCCEEEEEEcCCccCCCCCceEEEEeeCCCCCC---CCCCeEEeec--CC-----CceEEEEEeeCCE
Q 004839 264 GL---AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFP---SRTWESVFID--DQ-----GLVVEDVDFCKTH 330 (728)
Q Consensus 264 ~~---~~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~li~~--~~-----~~~i~~~~~~~~~ 330 (728)
.+ ..+.....++++||.+-.+ .|+.+++. ... ...|..+... .. +..+-.+....+.
T Consensus 182 ~dp~f~~~~~~~~~~~~~F~Sy~G---------~v~~~dls-g~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 182 DDPLFEHPAYSRDGGRLYFVSYEG---------NVYSADLS-GDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp TS-B-S--EEETTTTEEEEEBTTS---------EEEEEEET-TSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred CcccccccceECCCCeEEEEecCC---------EEEEEecc-CCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 11 1112234566788765432 46666654 111 0112211000 01 2333344444578
Q ss_pred EEEEEec-------CCeeEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCccCCCcEEEEEEccCCCCceEE
Q 004839 331 MALILRE-------GRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVV 403 (728)
Q Consensus 331 lv~~~~~-------~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~ 403 (728)
||+.... ++..+|+++|+.+++ ++ ..++++..+.+|.. +.+..-+.|..+.-. ..++
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~k-----rv-----~Ri~l~~~~~Si~V----sqd~~P~L~~~~~~~--~~l~ 315 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHK-----RV-----ARIPLEHPIDSIAV----SQDDKPLLYALSAGD--GTLD 315 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTE-----EE-----EEEEEEEEESEEEE----ESSSS-EEEEEETTT--TEEE
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCe-----EE-----EEEeCCCccceEEE----ccCCCcEEEEEcCCC--CeEE
Confidence 8887644 234689999987643 22 24455443334432 334454556554422 5899
Q ss_pred EEECCCCeEE
Q 004839 404 DYDLSYGKWN 413 (728)
Q Consensus 404 ~~~~~~~~~~ 413 (728)
.+|..+|+..
T Consensus 316 v~D~~tGk~~ 325 (342)
T PF06433_consen 316 VYDAATGKLV 325 (342)
T ss_dssp EEETTT--EE
T ss_pred EEeCcCCcEE
Confidence 9999998754
No 211
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.45 E-value=0.00078 Score=68.68 Aligned_cols=95 Identities=16% Similarity=0.277 Sum_probs=62.1
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
-+..+.|||||++||-.+ .+.+ |.++|-.+|+.+.... ...+..++||.|+|.|+-.+.|. .-+|| ++
T Consensus 369 lVn~V~fSPd~r~IASaS-FDkS----VkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDs---TLKvw--~V 438 (480)
T KOG0271|consen 369 LVNHVSFSPDGRYIASAS-FDKS----VKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDS---TLKVW--DV 438 (480)
T ss_pred heeeEEECCCccEEEEee-cccc----eeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCc---eEEEE--Ee
Confidence 567889999999999875 3333 8999999999776543 34678899999998665443332 22444 44
Q ss_pred CCCCceeEEeeec--CcceEEEEEEcCCCCEEE
Q 004839 203 GSTDEDALLLEES--NENVYVNIRHTKDFHFVC 233 (728)
Q Consensus 203 ~t~~~~~lv~~~~--~~~~~~~~~~SpDg~~l~ 233 (728)
.+.+ +.++-+ ++.. ..+.|||||+.++
T Consensus 439 ~tkK---l~~DLpGh~DEV-f~vDwspDG~rV~ 467 (480)
T KOG0271|consen 439 RTKK---LKQDLPGHADEV-FAVDWSPDGQRVA 467 (480)
T ss_pred eeee---ecccCCCCCceE-EEEEecCCCceee
Confidence 4332 222211 2222 2478999999764
No 212
>PTZ00421 coronin; Provisional
Probab=97.43 E-value=0.063 Score=60.05 Aligned_cols=114 Identities=10% Similarity=0.094 Sum_probs=73.0
Q ss_pred EeeceeeCC-CCCEEEEEEEcCCCcEEEEEEEECCCCcee-------c-cCc-cceeeeEEEecCCCEEEEEEecCCCCc
Q 004839 125 YEELSEVSP-DHKFLAYTMYDKDNDYFTLSVRNLNSGALC-------S-KPQ-AVRVSNIAWAKDGQALIYVVTDQNKRP 194 (728)
Q Consensus 125 ~~~~~~~SP-DG~~lA~~~~~~g~e~~~l~v~dl~tg~~~-------~-~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~ 194 (728)
.+..+.||| |+++||-.. .+| .|.++|+.++... . +.. ...+..+.|+|++..++.+... .
T Consensus 77 ~V~~v~fsP~d~~~LaSgS-~Dg----tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~----D 147 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTAS-EDG----TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA----D 147 (493)
T ss_pred CEEEEEEcCCCCCEEEEEe-CCC----EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC----C
Confidence 577889999 888887664 344 4999999875321 1 111 2356789999997655555432 2
Q ss_pred ceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCC
Q 004839 195 YQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 252 (728)
Q Consensus 195 ~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~ 252 (728)
..|.+.|+.++.. ...+.... .....+.|+|||+.|+..+.+ ..|.++|+.++
T Consensus 148 gtVrIWDl~tg~~-~~~l~~h~-~~V~sla~spdG~lLatgs~D---g~IrIwD~rsg 200 (493)
T PTZ00421 148 MVVNVWDVERGKA-VEVIKCHS-DQITSLEWNLDGSLLCTTSKD---KKLNIIDPRDG 200 (493)
T ss_pred CEEEEEECCCCeE-EEEEcCCC-CceEEEEEECCCCEEEEecCC---CEEEEEECCCC
Confidence 3678888877642 22222222 234568999999987655443 35888898763
No 213
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.38 E-value=0.074 Score=55.44 Aligned_cols=248 Identities=13% Similarity=0.010 Sum_probs=129.5
Q ss_pred ceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCccceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCCc
Q 004839 128 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDE 207 (728)
Q Consensus 128 ~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~ 207 (728)
.+.|-|+.+.|.|. |..++ .|+-+|+++|+.........+.....-.++..|+-.. ..+++.++.++..
T Consensus 29 gP~w~~~~~~L~w~-DI~~~---~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~-------~g~~~~~~~~~~~ 97 (307)
T COG3386 29 GPVWDPDRGALLWV-DILGG---RIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE-------HGVRLLDPDTGGK 97 (307)
T ss_pred CccCcCCCCEEEEE-eCCCC---eEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc-------cccEEEeccCCce
Confidence 45599999999886 77775 3888999988765554455556666655555554432 1355556544332
Q ss_pred eeEEeeecCc---ceEEEEEEcCCCCEEEEEEcC-----C----CceEEEEEeCCCCCCCeEEeeecC-CceEEEEeecC
Q 004839 208 DALLLEESNE---NVYVNIRHTKDFHFVCVHTFS-----T----TSSKVFLINAADPFSGLTLIWECE-GLAHCIVEHHE 274 (728)
Q Consensus 208 ~~lv~~~~~~---~~~~~~~~SpDg~~l~~~~~~-----~----~~~~l~~~dl~~~~~~~~~l~~~~-~~~~~~~~~dg 274 (728)
.+++.+..+. ...-+....|||++ +|.... . ..-.||++|..+ ...+.+.... -.....+++||
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~-wfgt~~~~~~~~~~~~~~G~lyr~~p~g--~~~~l~~~~~~~~NGla~SpDg 174 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRI-WFGDMGYFDLGKSEERPTGSLYRVDPDG--GVVRLLDDDLTIPNGLAFSPDG 174 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCE-EEeCCCccccCccccCCcceEEEEcCCC--CEEEeecCcEEecCceEECCCC
Confidence 1233221111 11234567899885 444433 1 124699999754 3334433311 11123578999
Q ss_pred CEEEEEEcCCccCCCCCceEEEEeeCCC-CCCC-CCCeEEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecCCCC
Q 004839 275 GFLYLFTDAAKEGQEADNHYLLRCPVDA-SFPS-RTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPA 352 (728)
Q Consensus 275 ~~l~~~tn~~~~~~~~~~~~l~~~~~~~-~~~~-~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~ 352 (728)
+.||+.-... .+|++++.+. .... +.-..+....+.-...++.++.+..+.+....+...|.+++.+ ++
T Consensus 175 ~tly~aDT~~--------~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~ 245 (307)
T COG3386 175 KTLYVADTPA--------NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GK 245 (307)
T ss_pred CEEEEEeCCC--------CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-Cc
Confidence 9888865432 4688887651 1111 1111222222233456777776443333334333567788765 32
Q ss_pred CCcceeecccccccccCCC-ceeeeecCCCccCCCcEEEEEEccCCCCceEEEEECCCCeE
Q 004839 353 GKGVVHLKELHPHFLPLPK-YVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKW 412 (728)
Q Consensus 353 ~~~~~~~~~~~~~~~~~p~-~~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~~~ 412 (728)
....+.+|. .......+ ..+.+.|.++......+ .....|...|.+
T Consensus 246 ----------l~~~i~lP~~~~t~~~Fg---G~~~~~L~iTs~~~~~~-~~~~~~~~~G~l 292 (307)
T COG3386 246 ----------LLGEIKLPVKRPTNPAFG---GPDLNTLYITSARSGMS-RMLTADPLGGGL 292 (307)
T ss_pred ----------EEEEEECCCCCCccceEe---CCCcCEEEEEecCCCCC-ccccccccCceE
Confidence 123455663 22222111 23457777777666665 333344444443
No 214
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.37 E-value=0.041 Score=55.24 Aligned_cols=212 Identities=13% Similarity=0.102 Sum_probs=111.3
Q ss_pred eecccccccCCceEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCce-----eccCc-cceeeeEEEecCCCEEE
Q 004839 111 LDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL-----CSKPQ-AVRVSNIAWAKDGQALI 184 (728)
Q Consensus 111 ld~n~~~~~~~~~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~-----~~~~~-~~~~~~~~WspDg~~l~ 184 (728)
|+.+.|....+ .+..+.||.|||+||-..+ ++ .|+|+++..-+. ++... -+....++|+||-+.++
T Consensus 77 l~~~~LKgH~~---~vt~~~FsSdGK~lat~~~-Dr----~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~v 148 (420)
T KOG2096|consen 77 LNVSVLKGHKK---EVTDVAFSSDGKKLATISG-DR----SIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVV 148 (420)
T ss_pred hhhhhhhccCC---ceeeeEEcCCCceeEEEeC-Cc----eEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEE
Confidence 44555533222 6888999999999998754 22 388888865321 11111 23456789999999988
Q ss_pred EEEecCCCCcceeEEEECCCCC----------ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCC
Q 004839 185 YVVTDQNKRPYQIYCSIIGSTD----------EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFS 254 (728)
Q Consensus 185 y~~~~~~~~~~~v~~~~l~t~~----------~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~ 254 (728)
+... +...|+.+.+.... .|-+-|++......+++.....++||. +++. .+.|.+.++.+ .
T Consensus 149 v~~~----~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~im-sas~--dt~i~lw~lkG--q 219 (420)
T KOG2096|consen 149 VSVK----RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIM-SASL--DTKICLWDLKG--Q 219 (420)
T ss_pred EEEc----cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEE-EecC--CCcEEEEecCC--c
Confidence 8754 34466666553211 122222222222234556666666654 3332 34688888874 2
Q ss_pred CeEEeeecC-CceEEEEeecCCEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEE---ee-cCCCceEEEEEeeC-
Q 004839 255 GLTLIWECE-GLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESV---FI-DDQGLVVEDVDFCK- 328 (728)
Q Consensus 255 ~~~~l~~~~-~~~~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l---i~-~~~~~~i~~~~~~~- 328 (728)
.+.-+.... ......++|+|+.++...-.. +.+++..=.. . .+.++++ +. ......+-.+...+
T Consensus 220 ~L~~idtnq~~n~~aavSP~GRFia~~gFTp-------DVkVwE~~f~-k--dG~fqev~rvf~LkGH~saV~~~aFsn~ 289 (420)
T KOG2096|consen 220 LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTP-------DVKVWEPIFT-K--DGTFQEVKRVFSLKGHQSAVLAAAFSNS 289 (420)
T ss_pred eeeeeccccccccceeeCCCCcEEEEecCCC-------CceEEEEEec-c--CcchhhhhhhheeccchhheeeeeeCCC
Confidence 333332222 334456788877555432222 2334433222 1 1222221 11 11112233344333
Q ss_pred CEEEEEEecCCeeEEEEEecC
Q 004839 329 THMALILREGRTYRLCSVSLP 349 (728)
Q Consensus 329 ~~lv~~~~~~g~~~l~~~~l~ 349 (728)
..-.+....+|..+|+-.|..
T Consensus 290 S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 290 STRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred cceeEEEecCCcEEEeeccce
Confidence 356667788898888777664
No 215
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=97.37 E-value=0.0095 Score=63.02 Aligned_cols=208 Identities=13% Similarity=-0.000 Sum_probs=118.5
Q ss_pred cEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccH-HHHHHHHH-CCeEEEEEcCCCCCCC---CCcccccc-----
Q 004839 478 ISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR-SELKSLLD-RGWVVAFADVRGGGGG---GKKWHHDG----- 547 (728)
Q Consensus 478 ~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~-~~~~~l~~-~Gy~v~~~d~RG~g~~---G~~~~~~~----- 547 (728)
.++...+.+... +..-.||++=||+|+.....|. ...+.+|+ -+.+|+.++|.|.+.+ |..+.-..
T Consensus 20 sKLEyri~ydd~----Ke~kaIvfiI~GfG~dan~~~~d~~r~~iA~~fnvv~I~V~YHCf~~R~q~~A~~~~~~~D~~i 95 (403)
T PF11144_consen 20 SKLEYRISYDDE----KEIKAIVFIIPGFGADANSNYLDFMREYIAKKFNVVVISVNYHCFCNRPQYGAKFYFDDIDKEI 95 (403)
T ss_pred ceeeEEeecCCC----CCceEEEEEeCCcCCCcchHHHHHHHHHHHHhCCEEEEEeeeeheeeccccCchhcCCHHHHHH
Confidence 455665555432 3334677777788877765554 45677777 4888888999886632 22111000
Q ss_pred ---------c--------------------------------------------------cCCCCCcHHHHHHHHHHHHH
Q 004839 548 ---------R--------------------------------------------------RTKKLNSIKDFISCARFLIE 568 (728)
Q Consensus 548 ---------~--------------------------------------------------~~~~~~~~~D~~~~~~~l~~ 568 (728)
- ...|.-..-|++.|+.++.+
T Consensus 96 Lk~~L~~i~i~~~~i~~~~~~~~~~~~L~~~I~~lK~~~~L~~d~kl~ls~tl~P~n~EYQN~GIMqAiD~INAl~~l~k 175 (403)
T PF11144_consen 96 LKKSLEKINIDSESINTYDNAEQIYELLNQNITELKEQGILPQDYKLNLSCTLIPPNGEYQNFGIMQAIDIINALLDLKK 175 (403)
T ss_pred HHHHHHHcCccccccccchhHHHHHHHHHHHHHHHHhcCCCCCCcEEeEEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Confidence 0 00112233477777777776
Q ss_pred cCCC--CCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccch-hhccCCCCC--------CC-------------
Q 004839 569 KEIV--KEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDAT-NTLLYPILP--------LI------------- 624 (728)
Q Consensus 569 ~~~~--d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~-~~~~~~~~~--------~~------------- 624 (728)
.-.. +.-++..+|+|+|||++..++--.|..|.+++-.++..-.. .+....... ..
T Consensus 176 ~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~~~~~~~~~~~~~i~~~~K 255 (403)
T PF11144_consen 176 IFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYICSGEFFNFKNIRIYCFDK 255 (403)
T ss_pred hhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCcccccccccccccCCEEEEEEec
Confidence 5222 23489999999999999999988999999999877654321 111111100 00
Q ss_pred cccccccCCCCC-HHHHHHHHccCcccccccCC---CCC-eEEEEcCCCCCCCHHHHHHHHHHHHhCCCC
Q 004839 625 AADYEEFGYPGD-IDDFHAIRNYSPYDNIQKDV---LYP-AVLVTSSFNTRFGVWEAAKWVARVRESTIY 689 (728)
Q Consensus 625 ~~~~~~~g~p~~-~~~~~~~~~~sP~~~i~~~~---~~P-~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~ 689 (728)
..|...-+.|.- ......++..--..++.-+. +-| -+..|+..|+.+|..+-.++++.|+++|-+
T Consensus 256 t~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p~~~K~~l~~~l~~lgfd 325 (403)
T PF11144_consen 256 TFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAPAEDKEELYEILKNLGFD 325 (403)
T ss_pred cccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCCHHHHHHHHHHHHHcCCC
Confidence 001111122210 01112233221122221111 123 466789999999999999999999999965
No 216
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.34 E-value=0.021 Score=63.48 Aligned_cols=146 Identities=13% Similarity=0.080 Sum_probs=97.7
Q ss_pred eEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceecc-Cc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEE
Q 004839 123 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSK-PQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 200 (728)
Q Consensus 123 ~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~-~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~ 200 (728)
+..+..++.||||++||-..+ +|. |.|+|..+|--... +. ...+..+.|+.+|+.++-.+.|. .|..+
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~e-DgK----VKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDG-----tVRAw 419 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAE-DGK----VKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDG-----TVRAW 419 (893)
T ss_pred ccceeeEEECCCCcEEEeccC-CCc----EEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCC-----eEEee
Confidence 568889999999999988753 343 99999998864432 22 34788999999999887776654 45555
Q ss_pred ECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCc-eE-EEEeecCCEEE
Q 004839 201 IIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL-AH-CIVEHHEGFLY 278 (728)
Q Consensus 201 ~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~-~~-~~~~~dg~~l~ 278 (728)
|+.... .-..|..+.+..+..++..|.|..+. +......+|++.+.++ ++..-+..+.++ +. ..++++|..|+
T Consensus 420 DlkRYr-NfRTft~P~p~QfscvavD~sGelV~--AG~~d~F~IfvWS~qT--GqllDiLsGHEgPVs~l~f~~~~~~La 494 (893)
T KOG0291|consen 420 DLKRYR-NFRTFTSPEPIQFSCVAVDPSGELVC--AGAQDSFEIFVWSVQT--GQLLDILSGHEGPVSGLSFSPDGSLLA 494 (893)
T ss_pred eecccc-eeeeecCCCceeeeEEEEcCCCCEEE--eeccceEEEEEEEeec--CeeeehhcCCCCcceeeEEccccCeEE
Confidence 554332 12244455555566677888887543 4445568999999999 455544444433 32 35678888777
Q ss_pred EEEcC
Q 004839 279 LFTDA 283 (728)
Q Consensus 279 ~~tn~ 283 (728)
-.++.
T Consensus 495 S~SWD 499 (893)
T KOG0291|consen 495 SGSWD 499 (893)
T ss_pred ecccc
Confidence 65553
No 217
>PTZ00421 coronin; Provisional
Probab=97.31 E-value=0.026 Score=63.12 Aligned_cols=147 Identities=10% Similarity=0.060 Sum_probs=84.7
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
.+..+.|+|++..+..+...++ .|.|+|+++++...... ...+..+.|+|||+.|+.... ...|.++|+
T Consensus 127 ~V~~l~f~P~~~~iLaSgs~Dg----tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~-----Dg~IrIwD~ 197 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAGADM----VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSK-----DKKLNIIDP 197 (493)
T ss_pred cEEEEEeCcCCCCEEEEEeCCC----EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecC-----CCEEEEEEC
Confidence 5677899999754444433444 49999999987554322 345788999999987765533 236788888
Q ss_pred CCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcC-CCceEEEEEeCCCCCCCeEEeeecC-Cce-EEEEeecCCEEEE
Q 004839 203 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFS-TTSSKVFLINAADPFSGLTLIWECE-GLA-HCIVEHHEGFLYL 279 (728)
Q Consensus 203 ~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~-~~~~~l~~~dl~~~~~~~~~l~~~~-~~~-~~~~~~dg~~l~~ 279 (728)
.+++.- .............+.|++++..|+....+ .....|.+.|+.+.......+.... ... ...++++++.||.
T Consensus 198 rsg~~v-~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~l 276 (493)
T PTZ00421 198 RDGTIV-SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYI 276 (493)
T ss_pred CCCcEE-EEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEE
Confidence 776421 11111111112345688888877655433 2346788899876332222211111 111 2234566776665
Q ss_pred EE
Q 004839 280 FT 281 (728)
Q Consensus 280 ~t 281 (728)
..
T Consensus 277 gg 278 (493)
T PTZ00421 277 GS 278 (493)
T ss_pred EE
Confidence 44
No 218
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.30 E-value=0.072 Score=59.39 Aligned_cols=145 Identities=14% Similarity=0.105 Sum_probs=86.4
Q ss_pred eEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECC-CCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEE
Q 004839 123 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLN-SGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 199 (728)
Q Consensus 123 ~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~-tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~ 199 (728)
...+....|||||++|+=..+ ..+|+|+|++ .+..+.... ...+..++|+|+|+.|+-...| ..|.+
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s~-----D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D-----~tvri 272 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGSD-----DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDD-----GTVRI 272 (456)
T ss_pred ccceeeeEECCCCcEEEEecC-----CceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCC-----CcEEE
Confidence 346888999999996655432 3569999994 444443322 4467889999999555444333 25777
Q ss_pred EECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCC-eEEeeecCCc---eEEEEeecCC
Q 004839 200 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSG-LTLIWECEGL---AHCIVEHHEG 275 (728)
Q Consensus 200 ~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~-~~~l~~~~~~---~~~~~~~dg~ 275 (728)
.++.++.....+ ..... ....+.+++||++|+..+. ...|.+.|+.++... .+.+...... ....++++++
T Consensus 273 Wd~~~~~~~~~l-~~hs~-~is~~~f~~d~~~l~s~s~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~ 347 (456)
T KOG0266|consen 273 WDVRTGECVRKL-KGHSD-GISGLAFSPDGNLLVSASY---DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK 347 (456)
T ss_pred EeccCCeEEEee-eccCC-ceEEEEECCCCCEEEEcCC---CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc
Confidence 788776422222 22222 3456789999999876533 456888898873210 1222222222 2223456666
Q ss_pred EEEEEEc
Q 004839 276 FLYLFTD 282 (728)
Q Consensus 276 ~l~~~tn 282 (728)
+++..+.
T Consensus 348 ~ll~~~~ 354 (456)
T KOG0266|consen 348 YLLSASL 354 (456)
T ss_pred EEEEecC
Confidence 6655443
No 219
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=97.28 E-value=0.0023 Score=65.60 Aligned_cols=112 Identities=19% Similarity=0.201 Sum_probs=75.8
Q ss_pred ccEEEEEcCCCCCCcCcccHHHHHHHH---HCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHH----HHHHHHH
Q 004839 496 NPGLLHGHGAYGELLDKRWRSELKSLL---DRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFIS----CARFLIE 568 (728)
Q Consensus 496 ~P~vv~~hGg~~~~~~~~~~~~~~~l~---~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~----~~~~l~~ 568 (728)
.++++++.|-||-. ..|......|. ...|.|+.....|+...... ..........+++|.++ .++.++.
T Consensus 2 ~~li~~IPGNPGlv--~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~--~~~~~~~~~~sL~~QI~hk~~~i~~~~~ 77 (266)
T PF10230_consen 2 RPLIVFIPGNPGLV--EFYEEFLSALYEKLNPQFEILGISHAGHSTSPSN--SKFSPNGRLFSLQDQIEHKIDFIKELIP 77 (266)
T ss_pred cEEEEEECCCCChH--HHHHHHHHHHHHhCCCCCeeEEecCCCCcCCccc--ccccCCCCccCHHHHHHHHHHHHHHHhh
Confidence 47899999999843 34444445555 35899999999998754332 00001233446666654 3444443
Q ss_pred cCCCCCCcEEEEEeCccHHHHHHHHHhCC---CceeEEEEeCCccc
Q 004839 569 KEIVKEHKLAGWGYSAGGLLVAAAINCCP---DLFRAVVLEVPFLD 611 (728)
Q Consensus 569 ~~~~d~~ri~i~G~S~GG~~~~~~~~~~p---~~f~a~v~~~p~~d 611 (728)
+......++.++|||.|+||++.++-+.+ ..++.+++..|.+.
T Consensus 78 ~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~ 123 (266)
T PF10230_consen 78 QKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIE 123 (266)
T ss_pred hhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCccc
Confidence 32224579999999999999999999988 67888888888653
No 220
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.24 E-value=0.008 Score=62.36 Aligned_cols=111 Identities=15% Similarity=0.140 Sum_probs=70.9
Q ss_pred EEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEE
Q 004839 124 AYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 201 (728)
Q Consensus 124 ~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~ 201 (728)
..++.++|.|+|++|+-.+- + .+..++|+.+++.+.... ...+.+++|-+||.-+.-...| ...+|| |
T Consensus 262 ~RVs~VafHPsG~~L~Tasf-D----~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD---~~~RvW--D 331 (459)
T KOG0272|consen 262 ARVSRVAFHPSGKFLGTASF-D----STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLD---SLGRVW--D 331 (459)
T ss_pred hhheeeeecCCCceeeeccc-c----cchhhcccccchhhHhhcccccccceeEecCCCceeeccCcc---chhhee--e
Confidence 47889999999999987643 2 347899999997655432 3478899999999744332222 233555 5
Q ss_pred CCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEE
Q 004839 202 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLI 247 (728)
Q Consensus 202 l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~ 247 (728)
+.++. ..+++++ ...-..++.|||+|-.|+ +.+.+++-.||-+
T Consensus 332 lRtgr-~im~L~g-H~k~I~~V~fsPNGy~lA-Tgs~Dnt~kVWDL 374 (459)
T KOG0272|consen 332 LRTGR-CIMFLAG-HIKEILSVAFSPNGYHLA-TGSSDNTCKVWDL 374 (459)
T ss_pred cccCc-EEEEecc-cccceeeEeECCCceEEe-ecCCCCcEEEeee
Confidence 55553 2344444 333346789999996654 4444444455533
No 221
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.22 E-value=0.086 Score=53.25 Aligned_cols=112 Identities=15% Similarity=0.147 Sum_probs=73.1
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
.+..+.|+|+++.++... .+| .|+++|+.+++...... ...+..+.|+|+++.|+... ....|+.+++
T Consensus 95 ~i~~~~~~~~~~~~~~~~-~~~----~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~~~~i~i~d~ 164 (289)
T cd00200 95 YVSSVAFSPDGRILSSSS-RDK----TIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS-----QDGTIKLWDL 164 (289)
T ss_pred cEEEEEEcCCCCEEEEec-CCC----eEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc-----CCCcEEEEEc
Confidence 466788999988776553 233 48999999776544322 34578899999977655442 1236888888
Q ss_pred CCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 203 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 203 ~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
.+++... .+.... .....+.++|+++.|++... ...+.++|+..
T Consensus 165 ~~~~~~~-~~~~~~-~~i~~~~~~~~~~~l~~~~~---~~~i~i~d~~~ 208 (289)
T cd00200 165 RTGKCVA-TLTGHT-GEVNSVAFSPDGEKLLSSSS---DGTIKLWDLST 208 (289)
T ss_pred cccccce-eEecCc-cccceEEECCCcCEEEEecC---CCcEEEEECCC
Confidence 7554211 222221 12346789999998887765 34688888876
No 222
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.06 E-value=0.0096 Score=62.45 Aligned_cols=144 Identities=11% Similarity=0.050 Sum_probs=88.8
Q ss_pred EEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCcc-----ceeeeEEEecCCCEEEEEEecCCCCcceeE
Q 004839 124 AYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQA-----VRVSNIAWAKDGQALIYVVTDQNKRPYQIY 198 (728)
Q Consensus 124 ~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~-----~~~~~~~WspDg~~l~y~~~~~~~~~~~v~ 198 (728)
+.+....|+|+|+..+|++.++ --+|.+|+++++..++... .....|.-|+|++.|++. .....|+
T Consensus 258 fPi~~a~f~p~G~~~i~~s~rr----ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~-----G~~G~I~ 328 (514)
T KOG2055|consen 258 FPIQKAEFAPNGHSVIFTSGRR----KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIA-----GNNGHIH 328 (514)
T ss_pred CccceeeecCCCceEEEecccc----eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEc-----ccCceEE
Confidence 3577788999999777765332 3489999999987765442 255678999999988775 3344677
Q ss_pred EEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecC--CceEEEEeecCCE
Q 004839 199 CSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE--GLAHCIVEHHEGF 276 (728)
Q Consensus 199 ~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~--~~~~~~~~~dg~~ 276 (728)
+....|+. ++..-.-..-..++.||.||+.|++.... .+||+.|+.... -..+..... .+...-++.+|.+
T Consensus 329 lLhakT~e---li~s~KieG~v~~~~fsSdsk~l~~~~~~---GeV~v~nl~~~~-~~~rf~D~G~v~gts~~~S~ng~y 401 (514)
T KOG2055|consen 329 LLHAKTKE---LITSFKIEGVVSDFTFSSDSKELLASGGT---GEVYVWNLRQNS-CLHRFVDDGSVHGTSLCISLNGSY 401 (514)
T ss_pred eehhhhhh---hhheeeeccEEeeEEEecCCcEEEEEcCC---ceEEEEecCCcc-eEEEEeecCccceeeeeecCCCce
Confidence 66655543 11111111233467899999988765543 389999998742 112222111 1122334566776
Q ss_pred EEEEEcC
Q 004839 277 LYLFTDA 283 (728)
Q Consensus 277 l~~~tn~ 283 (728)
|+.-++.
T Consensus 402 lA~GS~~ 408 (514)
T KOG2055|consen 402 LATGSDS 408 (514)
T ss_pred EEeccCc
Confidence 6655544
No 223
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.48 Score=48.84 Aligned_cols=240 Identities=15% Similarity=0.093 Sum_probs=112.7
Q ss_pred EEEEECC--CCceeccCc---cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCCceeEEe---eecCcceEEEE
Q 004839 152 LSVRNLN--SGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLL---EESNENVYVNI 223 (728)
Q Consensus 152 l~v~dl~--tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~~lv~---~~~~~~~~~~~ 223 (728)
|++++++ +|+...... ..+...++|+|++|.||-...+.....-..|.+|-.++. -.++- ....+. +.+
T Consensus 18 I~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~-Lt~ln~~~~~g~~p--~yv 94 (346)
T COG2706 18 IYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGR-LTFLNRQTLPGSPP--CYV 94 (346)
T ss_pred eEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCe-EEEeeccccCCCCC--eEE
Confidence 5555554 555433222 456788999999998876654433222344555533332 11111 111222 346
Q ss_pred EEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEE----eeecCC----------ceEEEEeecCCEEEEEEcCCccCCC
Q 004839 224 RHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTL----IWECEG----------LAHCIVEHHEGFLYLFTDAAKEGQE 289 (728)
Q Consensus 224 ~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~----l~~~~~----------~~~~~~~~dg~~l~~~tn~~~~~~~ 289 (728)
++++||++|+......+ .|-+..++.. +.+.. +..... .....++|+++.|+. .+-+.+
T Consensus 95 svd~~g~~vf~AnY~~g--~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v-~DLG~D--- 167 (346)
T COG2706 95 SVDEDGRFVFVANYHSG--SVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVV-PDLGTD--- 167 (346)
T ss_pred EECCCCCEEEEEEccCc--eEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEE-eecCCc---
Confidence 78999999887666543 3444444331 22211 111111 112245677775554 444332
Q ss_pred CCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEee--CCEEEEEEecCCeeEEEEEecCCCCCCcceeecccccccc
Q 004839 290 ADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC--KTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFL 367 (728)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 367 (728)
...+|+++.. ......-. .++ ++.....+... ++..|++..-++.-.++.++...++ +..++ ..-
T Consensus 168 --ri~~y~~~dg-~L~~~~~~-~v~--~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~------~~~lQ-~i~ 234 (346)
T COG2706 168 --RIFLYDLDDG-KLTPADPA-EVK--PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK------FEELQ-TID 234 (346)
T ss_pred --eEEEEEcccC-cccccccc-ccC--CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce------EEEee-eec
Confidence 2455555421 11111111 112 22333344433 4556655544554445555533221 21111 011
Q ss_pred cCCCc------eeeeecCCCccCCCcEEEEEEccCCCCceEEEEECCCCeEEEEEeec
Q 004839 368 PLPKY------VSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQN 419 (728)
Q Consensus 368 ~~p~~------~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~~~~~l~~~~ 419 (728)
.+|+. ...|. .+.|+. +.|....-...-.+|.+|..+++++.+....
T Consensus 235 tlP~dF~g~~~~aaIh----is~dGr-FLYasNRg~dsI~~f~V~~~~g~L~~~~~~~ 287 (346)
T COG2706 235 TLPEDFTGTNWAAAIH----ISPDGR-FLYASNRGHDSIAVFSVDPDGGKLELVGITP 287 (346)
T ss_pred cCccccCCCCceeEEE----ECCCCC-EEEEecCCCCeEEEEEEcCCCCEEEEEEEec
Confidence 23332 22222 234443 4455555555567888899889887766544
No 224
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.02 E-value=0.0044 Score=68.68 Aligned_cols=131 Identities=15% Similarity=0.033 Sum_probs=78.2
Q ss_pred CcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccH----------------HHHHHHHHCCeEEEEEc-CCCCCC-
Q 004839 477 GISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR----------------SELKSLLDRGWVVAFAD-VRGGGG- 538 (728)
Q Consensus 477 G~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~----------------~~~~~l~~~Gy~v~~~d-~RG~g~- 538 (728)
+..+..|++..+.. ....|+|++++||||.+...+.. ..-..|.+.+ .++.+| ++|.|-
T Consensus 60 ~~~lFyw~~~s~~~--~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~-~~l~iDqP~G~G~S 136 (462)
T PTZ00472 60 DKHYFYWAFGPRNG--NPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNEA-YVIYVDQPAGVGFS 136 (462)
T ss_pred CceEEEEEEEcCCC--CCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCccccccc-CeEEEeCCCCcCcc
Confidence 55677777766642 34579999999999865322110 0112344444 455666 567763
Q ss_pred CCCccccccccCCCCCcHHHHHHHHHHHHHc-CCCCCCcEEEEEeCccHHHHHHHHHhC------C----CceeEEEEeC
Q 004839 539 GGKKWHHDGRRTKKLNSIKDFISCARFLIEK-EIVKEHKLAGWGYSAGGLLVAAAINCC------P----DLFRAVVLEV 607 (728)
Q Consensus 539 ~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~~~~~~~~~------p----~~f~a~v~~~ 607 (728)
++.. .. ....-....+|+...++.+.++ +.....++.|+|+||||..+..++.+- . =-+++++...
T Consensus 137 ~~~~-~~--~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGN 213 (462)
T PTZ00472 137 YADK-AD--YDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGN 213 (462)
T ss_pred cCCC-CC--CCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEec
Confidence 2211 00 0111123456666666655433 334458999999999999887766531 0 1378999999
Q ss_pred Ccccch
Q 004839 608 PFLDAT 613 (728)
Q Consensus 608 p~~d~~ 613 (728)
|++|..
T Consensus 214 g~~dp~ 219 (462)
T PTZ00472 214 GLTDPY 219 (462)
T ss_pred cccChh
Confidence 988764
No 225
>COG3150 Predicted esterase [General function prediction only]
Probab=97.01 E-value=0.022 Score=52.10 Aligned_cols=140 Identities=17% Similarity=0.087 Sum_probs=73.3
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcc----cchhhccCCCCCCCcccccc
Q 004839 555 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL----DATNTLLYPILPLIAADYEE 630 (728)
Q Consensus 555 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~----d~~~~~~~~~~~~~~~~~~~ 630 (728)
......+-++.++++.- |+ .++|.|-|.|||.+.|+..++. ++++| ..|.+ ++..+...+..|.+...|.
T Consensus 41 ~p~~a~~ele~~i~~~~-~~-~p~ivGssLGGY~At~l~~~~G--irav~-~NPav~P~e~l~gylg~~en~ytg~~y~- 114 (191)
T COG3150 41 DPQQALKELEKAVQELG-DE-SPLIVGSSLGGYYATWLGFLCG--IRAVV-FNPAVRPYELLTGYLGRPENPYTGQEYV- 114 (191)
T ss_pred CHHHHHHHHHHHHHHcC-CC-CceEEeecchHHHHHHHHHHhC--Chhhh-cCCCcCchhhhhhhcCCCCCCCCcceEE-
Confidence 45566666777776532 32 3899999999999999998753 44444 34433 2222222222222211110
Q ss_pred cCCCCCHHHHHHHHccCcccccccCCCCC--eEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCch
Q 004839 631 FGYPGDIDDFHAIRNYSPYDNIQKDVLYP--AVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENR 708 (728)
Q Consensus 631 ~g~p~~~~~~~~~~~~sP~~~i~~~~~~P--~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~ 708 (728)
.++...+.+ .-+ ++.. ++.| ..++....|....+.++.+.+..... .+..++.|.+..-
T Consensus 115 ----le~~hI~~l---~~~-~~~~-l~~p~~~~lL~qtgDEvLDyr~a~a~y~~~~~----------~V~dgg~H~F~~f 175 (191)
T COG3150 115 ----LESRHIATL---CVL-QFRE-LNRPRCLVLLSQTGDEVLDYRQAVAYYHPCYE----------IVWDGGDHKFKGF 175 (191)
T ss_pred ----eehhhHHHH---HHh-hccc-cCCCcEEEeecccccHHHHHHHHHHHhhhhhh----------eeecCCCccccch
Confidence 011111111 111 1222 3445 33444445887777777777666643 2246788988663
Q ss_pred hhhHHHHHHHHHHH
Q 004839 709 YLQCKESALETAFL 722 (728)
Q Consensus 709 ~~~~~~~~~~~afl 722 (728)
...+ ..+.+|+
T Consensus 176 ~~~l---~~i~aF~ 186 (191)
T COG3150 176 SRHL---QRIKAFK 186 (191)
T ss_pred HHhH---HHHHHHh
Confidence 3332 3345665
No 226
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=96.99 E-value=0.0089 Score=56.63 Aligned_cols=82 Identities=21% Similarity=0.193 Sum_probs=56.9
Q ss_pred HHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHh
Q 004839 516 SELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC 595 (728)
Q Consensus 516 ~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~ 595 (728)
.....|+++|+.|+-+|-+- -|.. .+ .....-.|+...+++..++- ..+++.++|.|+|+=+...+.++
T Consensus 20 ~~a~~l~~~G~~VvGvdsl~------Yfw~--~r-tP~~~a~Dl~~~i~~y~~~w--~~~~vvLiGYSFGADvlP~~~nr 88 (192)
T PF06057_consen 20 QIAEALAKQGVPVVGVDSLR------YFWS--ER-TPEQTAADLARIIRHYRARW--GRKRVVLIGYSFGADVLPFIYNR 88 (192)
T ss_pred HHHHHHHHCCCeEEEechHH------HHhh--hC-CHHHHHHHHHHHHHHHHHHh--CCceEEEEeecCCchhHHHHHhh
Confidence 35689999999999998541 1111 11 11235677777777776553 45799999999999999999988
Q ss_pred CCC----ceeEEEEeCC
Q 004839 596 CPD----LFRAVVLEVP 608 (728)
Q Consensus 596 ~p~----~f~a~v~~~p 608 (728)
-|. .++.+++.+|
T Consensus 89 Lp~~~r~~v~~v~Ll~p 105 (192)
T PF06057_consen 89 LPAALRARVAQVVLLSP 105 (192)
T ss_pred CCHHHHhheeEEEEecc
Confidence 886 4555555554
No 227
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=96.98 E-value=0.0059 Score=60.89 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=57.1
Q ss_pred cEEEEEcCCCCCCcCcccHHHHHHH--------HHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHH
Q 004839 497 PGLLHGHGAYGELLDKRWRSELKSL--------LDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIE 568 (728)
Q Consensus 497 P~vv~~hGg~~~~~~~~~~~~~~~l--------~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 568 (728)
..||++||.-|+. ..+......+ ....+.++..|+...... +. +..-....+-+..+++.+.+
T Consensus 5 ~pVlFIhG~~Gs~--~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~---~~----g~~l~~q~~~~~~~i~~i~~ 75 (225)
T PF07819_consen 5 IPVLFIHGNAGSY--KQVRSLASELQRKALLNDNSSHFDFFTVDFNEELSA---FH----GRTLQRQAEFLAEAIKYILE 75 (225)
T ss_pred CEEEEECcCCCCH--hHHHHHHHHHhhhhhhccCccceeEEEeccCccccc---cc----cccHHHHHHHHHHHHHHHHH
Confidence 4678999954432 1222222222 113577888887653311 11 11001122334456666654
Q ss_pred cC---CCCCCcEEEEEeCccHHHHHHHHHhCC---CceeEEEEeC
Q 004839 569 KE---IVKEHKLAGWGYSAGGLLVAAAINCCP---DLFRAVVLEV 607 (728)
Q Consensus 569 ~~---~~d~~ri~i~G~S~GG~~~~~~~~~~p---~~f~a~v~~~ 607 (728)
.. ...+++|.++||||||.++-.++...+ +.++.+|..+
T Consensus 76 ~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~ 120 (225)
T PF07819_consen 76 LYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLG 120 (225)
T ss_pred hhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEc
Confidence 32 467899999999999999988876533 3566666543
No 228
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=96.96 E-value=0.022 Score=57.63 Aligned_cols=197 Identities=13% Similarity=0.076 Sum_probs=99.9
Q ss_pred ccEEEEEcCCCCCCcCcccHHHHHHHH-HCCeE--EEEEcC--CCCCCCCCcccccc-------ccCCCC-CcH----HH
Q 004839 496 NPGLLHGHGAYGELLDKRWRSELKSLL-DRGWV--VAFADV--RGGGGGGKKWHHDG-------RRTKKL-NSI----KD 558 (728)
Q Consensus 496 ~P~vv~~hGg~~~~~~~~~~~~~~~l~-~~Gy~--v~~~d~--RG~g~~G~~~~~~~-------~~~~~~-~~~----~D 558 (728)
.|+ |++||.-+. ..+|..+++.+. ++|.+ ++.+++ -|.=.+-..|.... ...+.. ..+ .=
T Consensus 12 tPT-ifihG~~gt--~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~w 88 (255)
T PF06028_consen 12 TPT-IFIHGYGGT--ANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKW 88 (255)
T ss_dssp EEE-EEE--TTGG--CCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHH
T ss_pred CcE-EEECCCCCC--hhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHH
Confidence 454 677875443 366888899987 66654 444444 33322222221110 011122 122 22
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCC-----ceeEEEEeCCcccchhhccCCCCCCCcccccccCC
Q 004839 559 FISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD-----LFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGY 633 (728)
Q Consensus 559 ~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~-----~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~ 633 (728)
+..++.+|.++.-+ +++=++||||||......+..+.. .+.-.|++++.+|-...... .........-|
T Consensus 89 l~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~---~~~~~~~~~~g- 162 (255)
T PF06028_consen 89 LKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMND---DQNQNDLNKNG- 162 (255)
T ss_dssp HHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC----TTTT-CSTT--
T ss_pred HHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccc---cchhhhhcccC-
Confidence 34577777776544 689999999999999998876422 35666666655543321111 00111112234
Q ss_pred CCC-HHHHHHHHcc-CcccccccCCCCCeEEEEcC------CCCCCCHHHHHHHHHHHHhCCCCCCCccEEE-EcCCCCC
Q 004839 634 PGD-IDDFHAIRNY-SPYDNIQKDVLYPAVLVTSS------FNTRFGVWEAAKWVARVRESTIYDPKRPILL-NLTTDIV 704 (728)
Q Consensus 634 p~~-~~~~~~~~~~-sP~~~i~~~~~~P~lli~g~------~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~-~~~~gH~ 704 (728)
|.. .+.+..+.+. . .+..+ ...+|-|.|. .|-+||...++.+..-++..... -....+ -+++.|.
T Consensus 163 p~~~~~~y~~l~~~~~--~~~p~--~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~--Y~e~~v~G~~a~HS 236 (255)
T PF06028_consen 163 PKSMTPMYQDLLKNRR--KNFPK--NIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKS--YQEKTVTGKDAQHS 236 (255)
T ss_dssp BSS--HHHHHHHHTHG--GGSTT--T-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSE--EEEEEEESGGGSCC
T ss_pred CcccCHHHHHHHHHHH--hhCCC--CeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCc--eEEEEEECCCCccc
Confidence 432 2344444432 1 22322 3446788887 67899999998888877764422 123333 3457796
Q ss_pred CCc
Q 004839 705 EEN 707 (728)
Q Consensus 705 ~~~ 707 (728)
..-
T Consensus 237 ~Lh 239 (255)
T PF06028_consen 237 QLH 239 (255)
T ss_dssp GGG
T ss_pred cCC
Confidence 443
No 229
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.94 E-value=0.055 Score=54.85 Aligned_cols=149 Identities=13% Similarity=0.109 Sum_probs=84.9
Q ss_pred eEEeeceeeCCCCCEEEEEEEcCCC--cE--EEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCccee
Q 004839 123 YAYEELSEVSPDHKFLAYTMYDKDN--DY--FTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQI 197 (728)
Q Consensus 123 ~~~~~~~~~SPDG~~lA~~~~~~g~--e~--~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v 197 (728)
........+.|||+ |.++...... .. ..||.++.+ ++...... ......++|+||++.||++... ..+|
T Consensus 85 ~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~----~~~i 158 (246)
T PF08450_consen 85 FNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF----NGRI 158 (246)
T ss_dssp TEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETT----TTEE
T ss_pred cCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccc----ccee
Confidence 45778889999999 5555332211 11 569999998 65444322 3345689999999999886432 3479
Q ss_pred EEEECCCCC---c-eeEEeeecCc-ceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeec-CCceEEEE-
Q 004839 198 YCSIIGSTD---E-DALLLEESNE-NVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC-EGLAHCIV- 270 (728)
Q Consensus 198 ~~~~l~t~~---~-~~lv~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~-~~~~~~~~- 270 (728)
|++++.... . ..++.+.... .+.-++.+..+|+ |++... ....|+++|.++ .....+.-. .......+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~--~~~~I~~~~p~G--~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 159 WRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADW--GGGRIVVFDPDG--KLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEE--TTTEEEEEETTS--CEEEEEE-SSSSEEEEEEE
T ss_pred EEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEc--CCCEEEEECCCc--cEEEEEcCCCCCEEEEEEE
Confidence 999986432 1 2222222222 2345678899996 455444 235799999874 223333322 22222333
Q ss_pred eecCCEEEEEEc
Q 004839 271 EHHEGFLYLFTD 282 (728)
Q Consensus 271 ~~dg~~l~~~tn 282 (728)
.++.+.||+.+.
T Consensus 234 g~~~~~L~vTta 245 (246)
T PF08450_consen 234 GPDGKTLYVTTA 245 (246)
T ss_dssp STTSSEEEEEEB
T ss_pred CCCCCEEEEEeC
Confidence 256678888764
No 230
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=96.91 E-value=0.51 Score=46.75 Aligned_cols=195 Identities=15% Similarity=0.134 Sum_probs=108.2
Q ss_pred EeeceeeCCC-CCEEEEEEEcCCCcEEEEEEEECCCCceec-cC-c----cceeeeEEEecCCCEEEEEEecCCCCccee
Q 004839 125 YEELSEVSPD-HKFLAYTMYDKDNDYFTLSVRNLNSGALCS-KP-Q----AVRVSNIAWAKDGQALIYVVTDQNKRPYQI 197 (728)
Q Consensus 125 ~~~~~~~SPD-G~~lA~~~~~~g~e~~~l~v~dl~tg~~~~-~~-~----~~~~~~~~WspDg~~l~y~~~~~~~~~~~v 197 (728)
.+-.++|+|- |..||-. ++ ...|+++++.++.... .+ . ...+..++|+|.|+.|+-.++|.. .-|
T Consensus 16 r~W~~awhp~~g~ilAsc---g~--Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t---~~I 87 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASC---GT--DKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT---VVI 87 (312)
T ss_pred cEEEEEeccCCceEEEee---cC--CceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce---EEE
Confidence 4666779998 7644322 12 2458999988643221 11 1 236788999999998887776642 112
Q ss_pred EEEECCCCC-ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCe---EEeeecCCceEEEEeec
Q 004839 198 YCSIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGL---TLIWECEGLAHCIVEHH 273 (728)
Q Consensus 198 ~~~~l~t~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~---~~l~~~~~~~~~~~~~d 273 (728)
| .+. .+. +-.-+.+..+.. .-.++||++|.||+..+..+ .+|+...+.. .+. ..|.+...++.-.+.|.
T Consensus 88 w-~k~-~~efecv~~lEGHEnE-VK~Vaws~sG~~LATCSRDK---SVWiWe~ded-dEfec~aVL~~HtqDVK~V~WHP 160 (312)
T KOG0645|consen 88 W-KKE-DGEFECVATLEGHENE-VKCVAWSASGNYLATCSRDK---SVWIWEIDED-DEFECIAVLQEHTQDVKHVIWHP 160 (312)
T ss_pred e-ecC-CCceeEEeeeeccccc-eeEEEEcCCCCEEEEeeCCC---eEEEEEecCC-CcEEEEeeeccccccccEEEEcC
Confidence 2 221 222 222223333222 23589999999998777644 4666665532 333 23444445555566676
Q ss_pred CCEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecC-CCceEEEEEeeC-CEEEEEEecCCeeEEEE
Q 004839 274 EGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDD-QGLVVEDVDFCK-THMALILREGRTYRLCS 345 (728)
Q Consensus 274 g~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~-~~~~i~~~~~~~-~~lv~~~~~~g~~~l~~ 345 (728)
-..|++....+. ..++|+-..+ ..|+.+..-+ ....+-.++..+ +.-++...+++.-.|++
T Consensus 161 t~dlL~S~SYDn------TIk~~~~~~d-----ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 161 TEDLLFSCSYDN------TIKVYRDEDD-----DDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred CcceeEEeccCC------eEEEEeecCC-----CCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeee
Confidence 666777777664 2677775433 6787543322 122444444333 22344456666666666
No 231
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.89 E-value=0.17 Score=51.48 Aligned_cols=154 Identities=12% Similarity=0.005 Sum_probs=85.4
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCccceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 204 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t 204 (728)
.+..+.+||||+.+|+... ++....|++....+...... .......+.|++||. ++..... .....+++ +..+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~--~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~-~W~v~~~--~~~~~~~~-~~~~ 97 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSE--GDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGW-VWTVDDG--SGGVRVVR-DSAS 97 (253)
T ss_pred cccceEECCCCCeEEEEEE--cCCCCEEEEEcCCCcceeec-cCCccccccccCCCC-EEEEEcC--CCceEEEE-ecCC
Confidence 4667889999999999872 22345688887665443333 223677889999964 5544322 22223333 2222
Q ss_pred CCceeEEeeecCcc-eEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCC-CCCe------EEeeec-CCceEEEEeecCC
Q 004839 205 TDEDALLLEESNEN-VYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP-FSGL------TLIWEC-EGLAHCIVEHHEG 275 (728)
Q Consensus 205 ~~~~~lv~~~~~~~-~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~-~~~~------~~l~~~-~~~~~~~~~~dg~ 275 (728)
+........-.... -...+.+||||..+++........+||+.-+... .+.+ ..+... ........+-+++
T Consensus 98 g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 98 GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred CcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 32111111111111 3467899999999999987766678887654321 1212 222211 1122122234556
Q ss_pred EEEEEEcCCc
Q 004839 276 FLYLFTDAAK 285 (728)
Q Consensus 276 ~l~~~tn~~~ 285 (728)
.|++++...+
T Consensus 178 ~L~V~~~~~~ 187 (253)
T PF10647_consen 178 TLVVLGRSAG 187 (253)
T ss_pred EEEEEeCCCC
Confidence 7888777654
No 232
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=96.87 E-value=0.032 Score=57.33 Aligned_cols=72 Identities=15% Similarity=0.051 Sum_probs=50.2
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
.+-..+|||||++||-. +...+++++|+.|-.+...-. ..=+..++|||||+.|+-... ...|.+.|.
T Consensus 117 ~Vl~~~fsp~g~~l~tG-----sGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~-----dg~I~lwdp 186 (480)
T KOG0271|consen 117 AVLSVQFSPTGSRLVTG-----SGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSK-----DGSIRLWDP 186 (480)
T ss_pred cEEEEEecCCCceEEec-----CCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcccc-----CCeEEEecC
Confidence 45567899999998754 234789999998865433211 223578999999999876543 346777787
Q ss_pred CCCC
Q 004839 203 GSTD 206 (728)
Q Consensus 203 ~t~~ 206 (728)
.+++
T Consensus 187 ktg~ 190 (480)
T KOG0271|consen 187 KTGQ 190 (480)
T ss_pred CCCC
Confidence 7665
No 233
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=96.83 E-value=0.0016 Score=44.99 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=21.0
Q ss_pred eeceeeCCCCCEEEEEEEcCCCcEEEEEE
Q 004839 126 EELSEVSPDHKFLAYTMYDKDNDYFTLSV 154 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~~~g~e~~~l~v 154 (728)
...+.|||||++|+|++++.+....+||+
T Consensus 11 ~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred ccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 45678999999999999887333477875
No 234
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=96.80 E-value=0.0029 Score=69.11 Aligned_cols=90 Identities=14% Similarity=0.176 Sum_probs=63.0
Q ss_pred cccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHH
Q 004839 512 KRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAA 591 (728)
Q Consensus 512 ~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~ 591 (728)
..|...++.|.+.||.+ ..|.+|.| .+|+.... ....++++...++.+.+.. ...++.++||||||.++..
T Consensus 108 ~~~~~li~~L~~~GY~~-~~dL~g~g---YDwR~~~~---~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~~ 178 (440)
T PLN02733 108 YYFHDMIEQLIKWGYKE-GKTLFGFG---YDFRQSNR---LPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVKC 178 (440)
T ss_pred HHHHHHHHHHHHcCCcc-CCCcccCC---CCcccccc---HHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHHH
Confidence 45778889999999977 67888876 34554211 1124566666666665442 2368999999999999999
Q ss_pred HHHhCCCc----eeEEEEeCCcc
Q 004839 592 AINCCPDL----FRAVVLEVPFL 610 (728)
Q Consensus 592 ~~~~~p~~----f~a~v~~~p~~ 610 (728)
.+..+|+. ++..|+.++..
T Consensus 179 fl~~~p~~~~k~I~~~I~la~P~ 201 (440)
T PLN02733 179 FMSLHSDVFEKYVNSWIAIAAPF 201 (440)
T ss_pred HHHHCCHhHHhHhccEEEECCCC
Confidence 88888874 46667666543
No 235
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.80 E-value=0.012 Score=65.60 Aligned_cols=112 Identities=12% Similarity=0.065 Sum_probs=75.5
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
.+.-.+|.|+..|+|=. +...++++||+.+|..+++.. ...+..+++||+|++|+-.. ....|.+.|+
T Consensus 537 DV~cv~FHPNs~Y~aTG-----SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~-----ed~~I~iWDl 606 (707)
T KOG0263|consen 537 DVDCVSFHPNSNYVATG-----SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD-----EDGLIKIWDL 606 (707)
T ss_pred ccceEEECCcccccccC-----CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc-----cCCcEEEEEc
Confidence 45557799999877643 334569999999998777644 55788999999999886542 2346888899
Q ss_pred CCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 203 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 203 ~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
+++..-....+. .....++++|.||..|+... ..+.|.+.|+..
T Consensus 607 ~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg---~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 607 ANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGG---ADNSVRLWDLTK 650 (707)
T ss_pred CCCcchhhhhcc--cCceeEEEEecCCCEEEecC---CCCeEEEEEchh
Confidence 886421112222 22345688999999776433 234566667765
No 236
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.78 E-value=0.35 Score=53.87 Aligned_cols=140 Identities=14% Similarity=0.090 Sum_probs=81.4
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCc--eeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA--LCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 200 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~--~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~ 200 (728)
.+....+||||++++.+. .++ .+.++++.+++ ...... ...+..+.|+|||+.|+=.. + ...|.+.
T Consensus 161 sv~~~~fs~~g~~l~~~~-~~~----~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s-~----D~tiriw 230 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAAS-SDG----LIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGS-D----DKTLRIW 230 (456)
T ss_pred ceEEEEEcCCCCeEEEcc-CCC----cEEEeecccccchhhccccccccceeeeEECCCCcEEEEec-C----CceEEEe
Confidence 455578999999988874 333 37788886666 222221 33678999999999554332 2 2367777
Q ss_pred ECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecC-CceE-EEEeecCCEEE
Q 004839 201 IIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-GLAH-CIVEHHEGFLY 278 (728)
Q Consensus 201 ~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~-~~~~-~~~~~dg~~l~ 278 (728)
|+.....-..++. ....+...+.++|+|+. ++....+. .|.+.|+.+ ++........ +.+. ..+.++|..|+
T Consensus 231 d~~~~~~~~~~l~-gH~~~v~~~~f~p~g~~-i~Sgs~D~--tvriWd~~~--~~~~~~l~~hs~~is~~~f~~d~~~l~ 304 (456)
T KOG0266|consen 231 DLKDDGRNLKTLK-GHSTYVTSVAFSPDGNL-LVSGSDDG--TVRIWDVRT--GECVRKLKGHSDGISGLAFSPDGNLLV 304 (456)
T ss_pred eccCCCeEEEEec-CCCCceEEEEecCCCCE-EEEecCCC--cEEEEeccC--CeEEEeeeccCCceEEEEECCCCCEEE
Confidence 7733322222333 23334467899999954 44444333 467777776 4444444333 3332 34456666544
Q ss_pred EE
Q 004839 279 LF 280 (728)
Q Consensus 279 ~~ 280 (728)
-.
T Consensus 305 s~ 306 (456)
T KOG0266|consen 305 SA 306 (456)
T ss_pred Ec
Confidence 43
No 237
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=96.77 E-value=0.002 Score=67.94 Aligned_cols=112 Identities=19% Similarity=0.185 Sum_probs=61.5
Q ss_pred CCCccEEEEEcCCCCCCcCcccH-HHHHHHHH---CCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHH
Q 004839 493 ENQNPGLLHGHGAYGELLDKRWR-SELKSLLD---RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIE 568 (728)
Q Consensus 493 ~~~~P~vv~~hGg~~~~~~~~~~-~~~~~l~~---~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 568 (728)
+.+.|+++++||..+......|. .....|.. +.+.|+++|+..... ..+..+.... ...-.-+...+..|.+
T Consensus 68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~--~~Y~~a~~n~--~~vg~~la~~l~~L~~ 143 (331)
T PF00151_consen 68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGAS--NNYPQAVANT--RLVGRQLAKFLSFLIN 143 (331)
T ss_dssp -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHS--S-HHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhcc--ccccchhhhH--HHHHHHHHHHHHHHHh
Confidence 34579999999966555233343 34455555 489999999864321 1111111000 0011223334666665
Q ss_pred cCCCCCCcEEEEEeCccHHHHHHHHHhCCC--ceeEEEEeCC
Q 004839 569 KEIVKEHKLAGWGYSAGGLLVAAAINCCPD--LFRAVVLEVP 608 (728)
Q Consensus 569 ~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~--~f~a~v~~~p 608 (728)
...+++++|-++|||.||.++..+...... .+..+...-|
T Consensus 144 ~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDP 185 (331)
T PF00151_consen 144 NFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDP 185 (331)
T ss_dssp HH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-
T ss_pred hcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCc
Confidence 556789999999999999999999887665 6666665544
No 238
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.77 Score=46.45 Aligned_cols=114 Identities=12% Similarity=0.035 Sum_probs=73.7
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
.+..+.+|+||.+|+-+. .+. .|.++|..+|+.+.... +-++.-+.|......+.+.+. .....|...+|
T Consensus 16 ~i~sl~fs~~G~~litss-~dD----sl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt---k~d~tIryLsl 87 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSS-EDD----SLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST---KEDDTIRYLSL 87 (311)
T ss_pred ceeEEEecCCCCEEEEec-CCC----eEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC---CCCCceEEEEe
Confidence 466777999999998753 232 48999999998766443 346677889888888888754 23356777777
Q ss_pred CCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 203 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 203 ~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
-+.+ -...|..... -..++..+|-+.. +++++.+ ..|++.|+..
T Consensus 88 ~dNk-ylRYF~GH~~-~V~sL~~sP~~d~-FlS~S~D--~tvrLWDlR~ 131 (311)
T KOG1446|consen 88 HDNK-YLRYFPGHKK-RVNSLSVSPKDDT-FLSSSLD--KTVRLWDLRV 131 (311)
T ss_pred ecCc-eEEEcCCCCc-eEEEEEecCCCCe-EEecccC--CeEEeeEecC
Confidence 6653 2233443332 3456788887754 3333332 3466777764
No 239
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.65 E-value=0.086 Score=61.17 Aligned_cols=140 Identities=14% Similarity=0.070 Sum_probs=80.1
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCC----------CceeccC----------ccceeeeEEEecCCCEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNS----------GALCSKP----------QAVRVSNIAWAKDGQALI 184 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~t----------g~~~~~~----------~~~~~~~~~WspDg~~l~ 184 (728)
.+.-++|||||++||..+|. ..|.|++.+. |...... ....+..+.|+||++.|+
T Consensus 71 sv~CVR~S~dG~~lAsGSDD-----~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lv 145 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSDD-----RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLV 145 (942)
T ss_pred ceeEEEECCCCCeEeeccCc-----ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEE
Confidence 67788999999999998653 3466666652 1111110 123567899999998776
Q ss_pred EEEecCCCCcceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCC
Q 004839 185 YVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG 264 (728)
Q Consensus 185 y~~~~~~~~~~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~ 264 (728)
-...| +.|...+..+-. ...+... .....-++.|.|-|||++-.+.++ +=.+|. +.+ -+-.+.++...+
T Consensus 146 S~s~D-----nsViiwn~~tF~-~~~vl~~-H~s~VKGvs~DP~Gky~ASqsdDr-tikvwr--t~d-w~i~k~It~pf~ 214 (942)
T KOG0973|consen 146 SVSLD-----NSVIIWNAKTFE-LLKVLRG-HQSLVKGVSWDPIGKYFASQSDDR-TLKVWR--TSD-WGIEKSITKPFE 214 (942)
T ss_pred Eeccc-----ceEEEEccccce-eeeeeec-ccccccceEECCccCeeeeecCCc-eEEEEE--ccc-ceeeEeeccchh
Confidence 66443 256666655442 2222222 223445789999999987666543 233444 222 012233443332
Q ss_pred c-------eEEEEeecCCEEEEE
Q 004839 265 L-------AHCIVEHHEGFLYLF 280 (728)
Q Consensus 265 ~-------~~~~~~~dg~~l~~~ 280 (728)
. ....++|||.+|...
T Consensus 215 ~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred hCCCcceeeecccCCCcCeecch
Confidence 1 123567998876654
No 240
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=96.64 E-value=0.16 Score=49.91 Aligned_cols=149 Identities=19% Similarity=0.216 Sum_probs=86.9
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc----cceeeeEEEecCCCEEEEEEecCCCCcceeEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 200 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~ 200 (728)
.+..+.|.-||++||-.+. ++ .+.|++++.+..+.... .+.+..++|.|-..-++.+.+.+ ..|.+.
T Consensus 22 ~v~Sv~wn~~g~~lasgs~-dk----tv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~d----k~ir~w 92 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSF-DK----TVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGD----KTIRIW 92 (313)
T ss_pred cceEEEEcccCceeeeccc-CC----ceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCC----ceEEEE
Confidence 5667889999999998753 33 26777777664332211 22456789999887777776532 246666
Q ss_pred ECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecC---CceEEEEeecCCEE
Q 004839 201 IIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE---GLAHCIVEHHEGFL 277 (728)
Q Consensus 201 ~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~---~~~~~~~~~dg~~l 277 (728)
|+-+++.-..+ +...+. +.+.|||||.++++.... .+|-.+|..+ .+++...+ ...+..+. ..+.+
T Consensus 93 d~r~~k~~~~i-~~~~en--i~i~wsp~g~~~~~~~kd---D~it~id~r~----~~~~~~~~~~~e~ne~~w~-~~nd~ 161 (313)
T KOG1407|consen 93 DIRSGKCTARI-ETKGEN--INITWSPDGEYIAVGNKD---DRITFIDART----YKIVNEEQFKFEVNEISWN-NSNDL 161 (313)
T ss_pred EeccCcEEEEe-eccCcc--eEEEEcCCCCEEEEecCc---ccEEEEEecc----cceeehhcccceeeeeeec-CCCCE
Confidence 66555421112 112222 346899999999876654 3566777654 22222222 11222333 45668
Q ss_pred EEEEcCCccCCCCCceEEEEee
Q 004839 278 YLFTDAAKEGQEADNHYLLRCP 299 (728)
Q Consensus 278 ~~~tn~~~~~~~~~~~~l~~~~ 299 (728)
+|++|..+ -..|+..+
T Consensus 162 Fflt~GlG------~v~ILsyp 177 (313)
T KOG1407|consen 162 FFLTNGLG------CVEILSYP 177 (313)
T ss_pred EEEecCCc------eEEEEecc
Confidence 88888643 24466554
No 241
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.051 Score=54.60 Aligned_cols=112 Identities=14% Similarity=0.166 Sum_probs=70.3
Q ss_pred ceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCc--ee---ccC--ccceeeeEEEecCCCEEEEEEecCCCCcceeEEE
Q 004839 128 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA--LC---SKP--QAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 200 (728)
Q Consensus 128 ~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~--~~---~~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~ 200 (728)
..++.|.|=.+|... + ++ .|.++|+.+-. +. .+. ....+..+.||||||.|+.+.. ...++.+
T Consensus 145 i~AfDp~GLifA~~~--~-~~--~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~-----~s~~~~l 214 (311)
T KOG1446|consen 145 IAAFDPEGLIFALAN--G-SE--LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN-----ASFIYLL 214 (311)
T ss_pred ceeECCCCcEEEEec--C-CC--eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC-----CCcEEEE
Confidence 457899997666653 2 22 48888886531 11 111 1336789999999999999853 3468888
Q ss_pred ECCCCCceeEEeeecC-cceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCC
Q 004839 201 IIGSTDEDALLLEESN-ENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 252 (728)
Q Consensus 201 ~l~t~~~~~lv~~~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~ 252 (728)
|.-++......-..+. ...-++..++|||++|+..++++ .|++++++++
T Consensus 215 DAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg---~i~vw~~~tg 264 (311)
T KOG1446|consen 215 DAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDG---TIHVWNLETG 264 (311)
T ss_pred EccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCC---cEEEEEcCCC
Confidence 8776641111111122 22336778999999987655533 5777777773
No 242
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=96.60 E-value=0.0032 Score=66.83 Aligned_cols=112 Identities=19% Similarity=0.080 Sum_probs=73.1
Q ss_pred EEEEEcCCCCCCcCcccH-HHHHHHHHC-CeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcC---CC
Q 004839 498 GLLHGHGAYGELLDKRWR-SELKSLLDR-GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKE---IV 572 (728)
Q Consensus 498 ~vv~~hGg~~~~~~~~~~-~~~~~l~~~-Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~ 572 (728)
++|++|||--..-.++-. .....|+.. ..+|+.+|||-+. +|--+.-......|.-.+-|..-|++|+.+.- .-
T Consensus 137 VlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG~-FGFL~l~~~~eaPGNmGl~DQqLAl~WV~~Ni~aFGG 215 (601)
T KOG4389|consen 137 VLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVGA-FGFLYLPGHPEAPGNMGLLDQQLALQWVQENIAAFGG 215 (601)
T ss_pred EEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeecc-ceEEecCCCCCCCCccchHHHHHHHHHHHHhHHHhCC
Confidence 889999962211111111 134556664 5778889999543 44333322222334445788888999998752 13
Q ss_pred CCCcEEEEEeCccHHHHHHHHHhCCC---ceeEEEEeCCccc
Q 004839 573 KEHKLAGWGYSAGGLLVAAAINCCPD---LFRAVVLEVPFLD 611 (728)
Q Consensus 573 d~~ri~i~G~S~GG~~~~~~~~~~p~---~f~a~v~~~p~~d 611 (728)
||+||.++|.|+|+.-+.+-+.. |. +|+-+|+++|-++
T Consensus 216 np~~vTLFGESAGaASv~aHLls-P~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 216 NPSRVTLFGESAGAASVVAHLLS-PGSRGLFHRAILQSGSLN 256 (601)
T ss_pred CcceEEEeccccchhhhhheecC-CCchhhHHHHHhhcCCCC
Confidence 99999999999999887765542 43 8999999988654
No 243
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=96.59 E-value=0.86 Score=44.96 Aligned_cols=141 Identities=14% Similarity=0.072 Sum_probs=79.6
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 203 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~ 203 (728)
.+.+..|+|-..-+.++.. +| -.|.++|..+++....+. ......+.|+|||.++++...+ ..|-.+|..
T Consensus 66 svdql~w~~~~~d~~atas-~d---k~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kd-----D~it~id~r 136 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATAS-GD---KTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKD-----DRITFIDAR 136 (313)
T ss_pred chhhheeCCCCCcceEEec-CC---ceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCc-----ccEEEEEec
Confidence 5677888887766666543 22 248999999998776544 4456678999999999887433 356666665
Q ss_pred CCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCc-eEEEEeecCCEEEEEE
Q 004839 204 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL-AHCIVEHHEGFLYLFT 281 (728)
Q Consensus 204 t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~-~~~~~~~dg~~l~~~t 281 (728)
+-+ ++.++.-.-+...+.|.-++..+ |..+..+.-+|.-++.-. ..+-|...... ....++|+|++|+.-+
T Consensus 137 ~~~---~~~~~~~~~e~ne~~w~~~nd~F-flt~GlG~v~ILsypsLk---pv~si~AH~snCicI~f~p~GryfA~Gs 208 (313)
T KOG1407|consen 137 TYK---IVNEEQFKFEVNEISWNNSNDLF-FLTNGLGCVEILSYPSLK---PVQSIKAHPSNCICIEFDPDGRYFATGS 208 (313)
T ss_pred ccc---eeehhcccceeeeeeecCCCCEE-EEecCCceEEEEeccccc---cccccccCCcceEEEEECCCCceEeecc
Confidence 432 22222211122456777666544 444433333333332111 11222222222 2235679999887643
No 244
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=96.59 E-value=0.0078 Score=62.77 Aligned_cols=132 Identities=18% Similarity=0.216 Sum_probs=81.8
Q ss_pred cEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHH---HHHHHH-HCCeEEEEEcCCCCCC---CCCccccccccC
Q 004839 478 ISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS---ELKSLL-DRGWVVAFADVRGGGG---GGKKWHHDGRRT 550 (728)
Q Consensus 478 ~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~---~~~~l~-~~Gy~v~~~d~RG~g~---~G~~~~~~~~~~ 550 (728)
.+.+..++....+-.+++.|+++|. | ..+..+ .|.. ....+| +.+-.++.+..|--|+ +|.+-+......
T Consensus 63 ~tF~qRylin~~fw~~g~gPIffYt-G-NEGdie-~Fa~ntGFm~D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~hl 139 (492)
T KOG2183|consen 63 KTFDQRYLINDDFWKKGEGPIFFYT-G-NEGDIE-WFANNTGFMWDLAPELKALLVFAEHRYYGESLPFGSQSYKDARHL 139 (492)
T ss_pred cceeeEEEEecccccCCCCceEEEe-C-CcccHH-HHHhccchHHhhhHhhCceEEEeehhccccCCCCcchhccChhhh
Confidence 3344444444444334446765553 3 222221 1211 123333 4689999999997775 444411111111
Q ss_pred ---CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEE-EeCCcccc
Q 004839 551 ---KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVV-LEVPFLDA 612 (728)
Q Consensus 551 ---~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v-~~~p~~d~ 612 (728)
.-....+|+...+.+|..........|.++|+||||.+++|.=.++|.++.+++ +.+|++-+
T Consensus 140 gyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAPvl~f 205 (492)
T KOG2183|consen 140 GYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAPVLYF 205 (492)
T ss_pred ccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCceEee
Confidence 123467899999999987766667899999999999999999999999876665 45576543
No 245
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.56 E-value=0.013 Score=55.89 Aligned_cols=106 Identities=16% Similarity=0.094 Sum_probs=76.7
Q ss_pred EEEEEcCCCCCCcC--cccHHHHHHHHHCCeEEEEEcCCCCC-CCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCC
Q 004839 498 GLLHGHGAYGELLD--KRWRSELKSLLDRGWVVAFADVRGGG-GGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 574 (728)
Q Consensus 498 ~vv~~hGg~~~~~~--~~~~~~~~~l~~~Gy~v~~~d~RG~g-~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 574 (728)
..|.+-||-+.... +.-.....+|.+.+|..+.+..|.+- |||..- -..+.+|+...+++++..++.
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~s--------lk~D~edl~~l~~Hi~~~~fS-- 106 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFS--------LKDDVEDLKCLLEHIQLCGFS-- 106 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeecccccccccccc--------ccccHHHHHHHHHHhhccCcc--
Confidence 44444455554332 22234567888899999999998764 454431 124789999999999877664
Q ss_pred CcEEEEEeCccHHHHHHHHHh--CCCceeEEEEeCCcccch
Q 004839 575 HKLAGWGYSAGGLLVAAAINC--CPDLFRAVVLEVPFLDAT 613 (728)
Q Consensus 575 ~ri~i~G~S~GG~~~~~~~~~--~p~~f~a~v~~~p~~d~~ 613 (728)
..|.++|||-|.-=.+..+++ .|..++|+|+.+|+.|..
T Consensus 107 t~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 107 TDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred cceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 489999999999888877743 356789999999999876
No 246
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=96.52 E-value=0.019 Score=66.26 Aligned_cols=119 Identities=13% Similarity=0.114 Sum_probs=73.3
Q ss_pred CEEEEEEEcCCCcEEEEEEEECCCCceecc-Cc-cceeeeEEEecCCCEEEE-EEecCCCCcceeEEEECCCCCcee--E
Q 004839 136 KFLAYTMYDKDNDYFTLSVRNLNSGALCSK-PQ-AVRVSNIAWAKDGQALIY-VVTDQNKRPYQIYCSIIGSTDEDA--L 210 (728)
Q Consensus 136 ~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~-~~-~~~~~~~~WspDg~~l~y-~~~~~~~~~~~v~~~~l~t~~~~~--l 210 (728)
.+|||..+..| .|.+.|.+++....+ .. ...+..++|||||+.|+| +....-.+...||+++|.+..... |
T Consensus 319 tkiAfv~~~~~----~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl 394 (912)
T TIGR02171 319 AKLAFRNDVTG----NLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKL 394 (912)
T ss_pred eeEEEEEcCCC----eEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEe
Confidence 57999977555 599999998876654 32 446778999999999999 654432345679999998764221 1
Q ss_pred Eeee-cCcceEEEEEEcCCCCEEEEE-EcCCCc--------eEEEEEeCCCCC-CCeEEeeec
Q 004839 211 LLEE-SNENVYVNIRHTKDFHFVCVH-TFSTTS--------SKVFLINAADPF-SGLTLIWEC 262 (728)
Q Consensus 211 v~~~-~~~~~~~~~~~SpDg~~l~~~-~~~~~~--------~~l~~~dl~~~~-~~~~~l~~~ 262 (728)
-.+. .-+++ .+..+|..+++- ++..+. ..-|.+..++++ ++++.|...
T Consensus 395 ~ve~aaiprw----rv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gkfg~p~kl~dg 453 (912)
T TIGR02171 395 PVENAAIPRW----RVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGKFGTPKKLFDG 453 (912)
T ss_pred ecccccccce----EecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCCCCCchhhhcc
Confidence 1111 11222 446777654433 322211 236777776643 556666543
No 247
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=96.49 E-value=0.0033 Score=61.89 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=48.7
Q ss_pred EEEEcCCCCCCcCcccHHHHHHHHHCCeE---EEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004839 499 LLHGHGAYGELLDKRWRSELKSLLDRGWV---VAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 575 (728)
Q Consensus 499 vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~---v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 575 (728)
||++||-. ......|......|.++||. |+..+|-..... ....... ........+.+.++.+. .++..
T Consensus 4 VVlVHG~~-~~~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~~--~~~~~~~--~~~~~~~~l~~fI~~Vl--~~TGa- 75 (219)
T PF01674_consen 4 VVLVHGTG-GNAYSNWSTLAPYLKAAGYCDSEVYALTYGSGNGS--PSVQNAH--MSCESAKQLRAFIDAVL--AYTGA- 75 (219)
T ss_dssp EEEE--TT-TTTCGGCCHHHHHHHHTT--CCCEEEE--S-CCHH--THHHHHH--B-HHHHHHHHHHHHHHH--HHHT--
T ss_pred EEEECCCC-cchhhCHHHHHHHHHHcCCCcceeEeccCCCCCCC--Ccccccc--cchhhHHHHHHHHHHHH--HhhCC-
Confidence 57889854 33446788999999999999 799998433321 0000000 01112234444444444 34566
Q ss_pred cEEEEEeCccHHHHHHHHHh
Q 004839 576 KLAGWGYSAGGLLVAAAINC 595 (728)
Q Consensus 576 ri~i~G~S~GG~~~~~~~~~ 595 (728)
||=|+|||+||.++-+++..
T Consensus 76 kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 76 KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp -EEEEEETCHHHHHHHHHHH
T ss_pred EEEEEEcCCcCHHHHHHHHH
Confidence 99999999999999888753
No 248
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=96.48 E-value=0.062 Score=58.77 Aligned_cols=166 Identities=17% Similarity=0.088 Sum_probs=94.2
Q ss_pred ccEEEEEcCCCCCCcCcccHHHHHHHHH-CC--eEEEEEcCCC-CCCCCCccccccccCCCCCcHHHHHHHHHHHHH--c
Q 004839 496 NPGLLHGHGAYGELLDKRWRSELKSLLD-RG--WVVAFADVRG-GGGGGKKWHHDGRRTKKLNSIKDFISCARFLIE--K 569 (728)
Q Consensus 496 ~P~vv~~hGg~~~~~~~~~~~~~~~l~~-~G--y~v~~~d~RG-~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~--~ 569 (728)
.|+++..||++......+|...++.++. .| .-|..+|++- .|+ ..-....+-++...++.+. .
T Consensus 176 spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~igG-----------~nI~h~ae~~vSf~r~kvlei~ 244 (784)
T KOG3253|consen 176 SPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIGG-----------ANIKHAAEYSVSFDRYKVLEIT 244 (784)
T ss_pred CceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCCC-----------cchHHHHHHHHHHhhhhhhhhh
Confidence 5889999998732222333333333322 33 4455566652 121 1111123334444443322 2
Q ss_pred CCCCCCcEEEEEeCccHHHHHHHHHhCCCc-eeEEEEeCCcccchhhccCCCCCCCcccccccCCCCCHHHHHHHHccCc
Q 004839 570 EIVKEHKLAGWGYSAGGLLVAAAINCCPDL-FRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSP 648 (728)
Q Consensus 570 ~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~-f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sP 648 (728)
+..--..|.++|+|||..++..+.....|. +.|+|+..=.++-. +.+ -|.+++ .+
T Consensus 245 gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~v------dgp--------rgirDE-----~L----- 300 (784)
T KOG3253|consen 245 GEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTV------DGP--------RGIRDE-----AL----- 300 (784)
T ss_pred ccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCC------Ccc--------cCCcch-----hh-----
Confidence 334457899999999987777766655554 45555432111100 000 133331 11
Q ss_pred ccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCCc
Q 004839 649 YDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN 707 (728)
Q Consensus 649 ~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~ 707 (728)
- .++.|+|+|.|..|.+|++..-+++.+++++.. ..+ +..+++|.+..
T Consensus 301 ----l-dmk~PVLFV~Gsnd~mcspn~ME~vreKMqA~~-----elh-VI~~adhsmai 348 (784)
T KOG3253|consen 301 ----L-DMKQPVLFVIGSNDHMCSPNSMEEVREKMQAEV-----ELH-VIGGADHSMAI 348 (784)
T ss_pred ----H-hcCCceEEEecCCcccCCHHHHHHHHHHhhccc-----eEE-EecCCCccccC
Confidence 1 268899999999999999999999999999864 333 35789998653
No 249
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.47 E-value=0.032 Score=63.46 Aligned_cols=114 Identities=13% Similarity=0.227 Sum_probs=72.1
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceecc---Cc-------cceeeeEEEecCCCEEEEEEecCCCCc
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSK---PQ-------AVRVSNIAWAKDGQALIYVVTDQNKRP 194 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~---~~-------~~~~~~~~WspDg~~l~y~~~~~~~~~ 194 (728)
.+..+.++|.|++||.+. .+|. |+++|+.++..... .. ......++|+|||..|++...+.
T Consensus 140 pVl~l~~~p~~~fLAvss-~dG~----v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~---- 210 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSS-CDGK----VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN---- 210 (933)
T ss_pred ceeeeeEcCCCCEEEEEe-cCce----EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC----
Confidence 677889999999999984 6674 99999999864321 11 11346789999977776654332
Q ss_pred ceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 195 YQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 195 ~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
.|..++..+....-.+-......-+..++|||.|+||+-..- ..+|-+.|.++
T Consensus 211 -~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~---~g~I~vWnv~t 263 (933)
T KOG1274|consen 211 -TVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTL---DGQILVWNVDT 263 (933)
T ss_pred -eEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeecc---CCcEEEEeccc
Confidence 355555544321111111111122567899999999975433 35677777764
No 250
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=96.47 E-value=0.087 Score=53.45 Aligned_cols=235 Identities=15% Similarity=0.171 Sum_probs=112.0
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcC-CCCCC--cCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccc
Q 004839 472 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHG-AYGEL--LDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGR 548 (728)
Q Consensus 472 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hG-g~~~~--~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~ 548 (728)
+++.-| .|++++. + +++++.|++|-.|- |.... ...-|...........+.|+=+|.+|+.+-...+.
T Consensus 4 v~t~~G-~v~V~v~---G-~~~~~kp~ilT~HDvGlNh~scF~~ff~~~~m~~i~~~f~i~Hi~aPGqe~ga~~~p---- 74 (283)
T PF03096_consen 4 VETPYG-SVHVTVQ---G-DPKGNKPAILTYHDVGLNHKSCFQGFFNFEDMQEILQNFCIYHIDAPGQEEGAATLP---- 74 (283)
T ss_dssp EEETTE-EEEEEEE---S-S--TTS-EEEEE--TT--HHHHCHHHHCSHHHHHHHTTSEEEEEE-TTTSTT---------
T ss_pred eccCce-EEEEEEE---e-cCCCCCceEEEeccccccchHHHHHHhcchhHHHHhhceEEEEEeCCCCCCCccccc----
Confidence 344455 5666554 2 12346799999997 32211 11112223333445679999999999986322222
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhc------cC----
Q 004839 549 RTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL------LY---- 618 (728)
Q Consensus 549 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~------~~---- 618 (728)
......+++++.+.+..++++=-+ +.+..+|--+|+++-...|..+|+++-++|+..|...-...+ ..
T Consensus 75 ~~y~yPsmd~LAe~l~~Vl~~f~l--k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~Ew~~~K~~~~~L 152 (283)
T PF03096_consen 75 EGYQYPSMDQLAEMLPEVLDHFGL--KSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWMEWFYQKLSSWLL 152 (283)
T ss_dssp TT-----HHHHHCTHHHHHHHHT-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHHH----
T ss_pred ccccccCHHHHHHHHHHHHHhCCc--cEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHHHHHHHHhcccc
Confidence 122234677776666655544222 579999999999999999999999999999988764322210 00
Q ss_pred CCCCCC--cccc---cccC------CCC-------------CHHH----HHHHHccCcccccccCCCCCeEEEEcCCCCC
Q 004839 619 PILPLI--AADY---EEFG------YPG-------------DIDD----FHAIRNYSPYDNIQKDVLYPAVLVTSSFNTR 670 (728)
Q Consensus 619 ~~~~~~--~~~~---~~~g------~p~-------------~~~~----~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~ 670 (728)
....++ ...+ ..|| ++. ++.+ .+.+.+...+....+...+|+|+++|...+
T Consensus 153 ~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG~~Sp- 231 (283)
T PF03096_consen 153 YSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVGDNSP- 231 (283)
T ss_dssp ---CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEEETTST-
T ss_pred cccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEEecCCc-
Confidence 000111 0000 0111 110 0011 111222223332223367999999998876
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCccEEE-EcCCCCCCCchhhhHHHHHHHHHHHHHhhc
Q 004839 671 FGVWEAAKWVARVRESTIYDPKRPILL-NLTTDIVEENRYLQCKESALETAFLIKMME 727 (728)
Q Consensus 671 Vp~~~~~~~~~~L~~~~~~~~~~~~~~-~~~~gH~~~~~~~~~~~~~~~~afl~~~l~ 727 (728)
...++.++..+|...+ .-++ ..++|=. ...++=...+..+..|.+=+|
T Consensus 232 -~~~~vv~~ns~Ldp~~------ttllkv~dcGgl--V~eEqP~klaea~~lFlQG~G 280 (283)
T PF03096_consen 232 -HVDDVVEMNSKLDPTK------TTLLKVADCGGL--VLEEQPGKLAEAFKLFLQGMG 280 (283)
T ss_dssp -THHHHHHHHHHS-CCC------EEEEEETT-TT---HHHH-HHHHHHHHHHHHHHTT
T ss_pred -chhhHHHHHhhcCccc------ceEEEecccCCc--ccccCcHHHHHHHHHHHccCC
Confidence 4567889999996544 2233 4555432 233333445555666666555
No 251
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=96.46 E-value=1 Score=44.61 Aligned_cols=112 Identities=16% Similarity=0.172 Sum_probs=64.6
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc----cceeeeEEEecCCCEEEEEEecCCCCcceeEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 200 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~ 200 (728)
.+..++|||.|++||-.+ .+. ++.|+.-..++..-+.. +..+-.++||++|+.|+-.+. ...||+.
T Consensus 63 sVRsvAwsp~g~~La~aS-FD~----t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSR-----DKSVWiW 132 (312)
T KOG0645|consen 63 SVRSVAWSPHGRYLASAS-FDA----TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSR-----DKSVWIW 132 (312)
T ss_pred eeeeeeecCCCcEEEEee-ccc----eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeC-----CCeEEEE
Confidence 678899999999999875 333 24444444444322221 345778999999998877643 3368877
Q ss_pred ECCCCCc-e-eEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEe
Q 004839 201 IIGSTDE-D-ALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLIN 248 (728)
Q Consensus 201 ~l~t~~~-~-~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d 248 (728)
.+..+.+ + .-+.++. ....-.+.|.|... |+++.+-+++=.+|.-+
T Consensus 133 e~deddEfec~aVL~~H-tqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 133 EIDEDDEFECIAVLQEH-TQDVKHVIWHPTED-LLFSCSYDNTIKVYRDE 180 (312)
T ss_pred EecCCCcEEEEeeeccc-cccccEEEEcCCcc-eeEEeccCCeEEEEeec
Confidence 7764431 1 1122221 11122467888655 44555544444555444
No 252
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=96.39 E-value=0.02 Score=57.40 Aligned_cols=111 Identities=20% Similarity=0.185 Sum_probs=64.5
Q ss_pred CccEEEEEcCCCCCCcCcccHHHHHHHHHCCe--EEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCC
Q 004839 495 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGW--VVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIV 572 (728)
Q Consensus 495 ~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy--~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 572 (728)
+..++|++||- .......-....|....-|+ .++.+..+..|.. ..|..+ ...-..+-.++...++.|.+. .
T Consensus 17 ~~~vlvfVHGy-n~~f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~-~~Y~~d--~~~a~~s~~~l~~~L~~L~~~--~ 90 (233)
T PF05990_consen 17 DKEVLVFVHGY-NNSFEDALRRAAQLAHDLGFPGVVILFSWPSDGSL-LGYFYD--RESARFSGPALARFLRDLARA--P 90 (233)
T ss_pred CCeEEEEEeCC-CCCHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCh-hhhhhh--hhhHHHHHHHHHHHHHHHHhc--c
Confidence 45799999974 43332222223333333333 7899999877642 112111 111112445555566666544 2
Q ss_pred CCCcEEEEEeCccHHHHHHHHHhC----C-----CceeEEEEeCCccc
Q 004839 573 KEHKLAGWGYSAGGLLVAAAINCC----P-----DLFRAVVLEVPFLD 611 (728)
Q Consensus 573 d~~ri~i~G~S~GG~~~~~~~~~~----p-----~~f~a~v~~~p~~d 611 (728)
...+|-|++||||+.+++.++.+- + .+|.-+|+.+|=+|
T Consensus 91 ~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid 138 (233)
T PF05990_consen 91 GIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDID 138 (233)
T ss_pred CCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCC
Confidence 457999999999999999886541 1 24566666666444
No 253
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.057 Score=51.29 Aligned_cols=109 Identities=18% Similarity=0.124 Sum_probs=66.2
Q ss_pred EEEEcCCCCCCCCccEEEEEcCCCCCC-------------cCc-ccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccc
Q 004839 483 TIIYSPKYKKENQNPGLLHGHGAYGEL-------------LDK-RWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGR 548 (728)
Q Consensus 483 ~l~~p~~~~~~~~~P~vv~~hGg~~~~-------------~~~-~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~ 548 (728)
+++..+++ ...+..++|++||..-.. .+. .--+.+....+.||-|++.|.-- .+.|++.-.
T Consensus 89 FiF~s~~~-lt~~~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~----~~kfye~k~ 163 (297)
T KOG3967|consen 89 FIFMSEDA-LTNPQKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNR----ERKFYEKKR 163 (297)
T ss_pred eEEEChhH-hcCccceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCch----hhhhhhccc
Confidence 34444443 234456899999952110 000 11234555667899999998652 233443221
Q ss_pred cC--CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCC
Q 004839 549 RT--KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD 598 (728)
Q Consensus 549 ~~--~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~ 598 (728)
.. .-...++.+..+-.+++. ...+..|+++.|||||++++-++.+.|+
T Consensus 164 np~kyirt~veh~~yvw~~~v~--pa~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 164 NPQKYIRTPVEHAKYVWKNIVL--PAKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred CcchhccchHHHHHHHHHHHhc--ccCcceEEEEEeccCChhHHHHHHhcCC
Confidence 11 112345665556566663 3467899999999999999999999886
No 254
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=96.34 E-value=0.023 Score=59.99 Aligned_cols=86 Identities=21% Similarity=0.313 Sum_probs=62.5
Q ss_pred HHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHH-----HHHHHHHHcCCCCCCcEEEEEeCccHHHH
Q 004839 515 RSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFI-----SCARFLIEKEIVKEHKLAGWGYSAGGLLV 589 (728)
Q Consensus 515 ~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~-----~~~~~l~~~~~~d~~ri~i~G~S~GG~~~ 589 (728)
+..+..|+++|..|++++.|+-... . +...++|.+ .+++.+.+. +..++|=+.|+|.||.++
T Consensus 129 ~s~V~~l~~~g~~vfvIsw~nPd~~--------~---~~~~~edYi~e~l~~aid~v~~i--tg~~~InliGyCvGGtl~ 195 (445)
T COG3243 129 KSLVRWLLEQGLDVFVISWRNPDAS--------L---AAKNLEDYILEGLSEAIDTVKDI--TGQKDINLIGYCVGGTLL 195 (445)
T ss_pred ccHHHHHHHcCCceEEEeccCchHh--------h---hhccHHHHHHHHHHHHHHHHHHH--hCccccceeeEecchHHH
Confidence 4568999999999999998865432 1 123455555 455555543 334789999999999999
Q ss_pred HHHHHhCCCc-eeEEEEeCCcccch
Q 004839 590 AAAINCCPDL-FRAVVLEVPFLDAT 613 (728)
Q Consensus 590 ~~~~~~~p~~-f~a~v~~~p~~d~~ 613 (728)
..+++.++.. ++.++...-.+|..
T Consensus 196 ~~ala~~~~k~I~S~T~lts~~DF~ 220 (445)
T COG3243 196 AAALALMAAKRIKSLTLLTSPVDFS 220 (445)
T ss_pred HHHHHhhhhcccccceeeecchhhc
Confidence 9998887876 88888777666654
No 255
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.58 Score=51.29 Aligned_cols=138 Identities=14% Similarity=0.118 Sum_probs=84.0
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc---cceeeeEEEecCCCEEEEEEecCCCCcceeEEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 201 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~ 201 (728)
.+..+.|||||++||... ..|. +.|+|.++.+.+.... ...++.++|. +. ++-+- .+...|..+|
T Consensus 219 ~vtSv~ws~~G~~LavG~-~~g~----v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~-~lssG----sr~~~I~~~d 286 (484)
T KOG0305|consen 219 LVTSVKWSPDGSHLAVGT-SDGT----VQIWDVKEQKKTRTLRGSHASRVGSLAWN--SS-VLSSG----SRDGKILNHD 286 (484)
T ss_pred ceEEEEECCCCCEEEEee-cCCe----EEEEehhhccccccccCCcCceeEEEecc--Cc-eEEEe----cCCCcEEEEE
Confidence 677889999999999985 3443 8899998876554322 3578999998 22 22221 3445677777
Q ss_pred CCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCceE-EEEeecCCEEEE
Q 004839 202 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAH-CIVEHHEGFLYL 279 (728)
Q Consensus 202 l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~-~~~~~dg~~l~~ 279 (728)
+...+...-+... ...-.+++.|++|+++++ +.+.++.+++.|..+.. .+..+......+. ..+.|.-.-|+.
T Consensus 287 vR~~~~~~~~~~~-H~qeVCgLkws~d~~~lA---SGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~awcP~q~~lLA 360 (484)
T KOG0305|consen 287 VRISQHVVSTLQG-HRQEVCGLKWSPDGNQLA---SGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALAWCPWQSGLLA 360 (484)
T ss_pred Eecchhhhhhhhc-ccceeeeeEECCCCCeec---cCCCccceEeccCCCcc-ccEEEeccceeeeEeeeCCCccCceE
Confidence 7665421111221 122357899999999985 44456788888885532 3334444333332 344455444443
No 256
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=96.33 E-value=2.6 Score=47.49 Aligned_cols=260 Identities=13% Similarity=0.155 Sum_probs=142.3
Q ss_pred CCCCCEEEEEEEcCCCcEEEEEEEECCCCce---eccCc----cc----eeeeEEEecCCCEEEEEEecCCCCcceeEEE
Q 004839 132 SPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL---CSKPQ----AV----RVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 200 (728)
Q Consensus 132 SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~---~~~~~----~~----~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~ 200 (728)
..+|.+--|+....|.+ +-++..-+..|.. +.+.. .+ ..+.+.-|||++.++|.......+.+.|...
T Consensus 82 ~~~~~~~Yy~r~~~g~~-y~~~~R~~~~g~~~eevlLD~n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~k 160 (682)
T COG1770 82 YRKGPYEYYSRTEEGKE-YPIYCRQPDEGGEGEEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFK 160 (682)
T ss_pred cccCCeeEEEEecCCCc-ceeEEeccCCCCCceeEeecchhccCcccceeeeeeeeCCCCceEEEEEecccccEEEEEEE
Confidence 46777777777666653 4566664444422 11111 11 3467889999999999977667778889999
Q ss_pred ECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCC--ceEEEEEeCCCCCCCeEEeeecCCceE-EEE--eecCC
Q 004839 201 IIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT--SSKVFLINAADPFSGLTLIWECEGLAH-CIV--EHHEG 275 (728)
Q Consensus 201 ~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~--~~~l~~~dl~~~~~~~~~l~~~~~~~~-~~~--~~dg~ 275 (728)
|+.+++.- . ++-+ ....++.|.+|++.++++..... ..+||...+.++...-+.|.+..+... ..+ +..+.
T Consensus 161 dL~tg~~~--~-d~i~-~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~ 236 (682)
T COG1770 161 DLATGEEL--P-DEIT-NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSRSEA 236 (682)
T ss_pred eccccccc--c-hhhc-ccccceEEecCCCeEEEEEEcCCCCcceEEEEecCCCCCcceEEEEcCCCcEEEEeeeccCCc
Confidence 99887511 1 1111 11234689999999999887654 378999988875444455555443322 122 23344
Q ss_pred EEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCC-eeEEEEEecCCCCCC
Q 004839 276 FLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGR-TYRLCSVSLPLPAGK 354 (728)
Q Consensus 276 ~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g-~~~l~~~~l~~~~~~ 354 (728)
.|++..+.. . ...+..++.+ .++ ..++.+.+...+... .++-.++..++..+.+| .-+|+...... .+
T Consensus 237 yi~i~~~~~-~-----tsE~~ll~a~-~p~-~~p~vv~pr~~g~eY-~~eh~~d~f~i~sN~~gknf~l~~ap~~~--~~ 305 (682)
T COG1770 237 YIVISLGSH-I-----TSEVRLLDAD-DPE-AEPKVVLPRENGVEY-SVEHGGDRFYILSNADGKNFKLVRAPVSA--DK 305 (682)
T ss_pred eEEEEcCCC-c-----ceeEEEEecC-CCC-CceEEEEEcCCCcEE-eeeecCcEEEEEecCCCcceEEEEccCCC--Ch
Confidence 555544222 1 2456666665 443 456666655444433 23334677888888888 23555544311 11
Q ss_pred cceeecccccccccCCCceeeeecCCCccCCCcEEEEEEccCCCCceEEEEECCCCeEEEEEee
Q 004839 355 GVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQ 418 (728)
Q Consensus 355 ~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~~~~~l~~~ 418 (728)
.. +. ..++-+... .+. + .+.-.+.+++....-.. +.++..+.++++...|.-.
T Consensus 306 ~~--w~----~~I~h~~~~-~l~-~--~~~f~~~lVl~eR~~gl-p~v~v~~~~~~~~~~i~f~ 358 (682)
T COG1770 306 SN--WR----ELIPHREDV-RLE-G--VDLFADHLVLLERQEGL-PRVVVRDRKTGEERGIAFD 358 (682)
T ss_pred hc--Ce----eeeccCCCc-eee-e--eeeeccEEEEEecccCC-ceEEEEecCCCceeeEEec
Confidence 11 11 122222221 111 1 12223445555444333 4666677777776655433
No 257
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=96.27 E-value=0.043 Score=60.39 Aligned_cols=141 Identities=14% Similarity=0.035 Sum_probs=78.1
Q ss_pred EEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCccc---------H--------HHHHHHHHCCeEEEEEc
Q 004839 470 YDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRW---------R--------SELKSLLDRGWVVAFAD 532 (728)
Q Consensus 470 ~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~---------~--------~~~~~l~~~Gy~v~~~d 532 (728)
+.+....+..+..|++..++ .....|+||++.||||.+..... . .....|.+ -..++.+|
T Consensus 16 l~~~~~~~~~lfyw~~~s~~--~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~-~an~l~iD 92 (415)
T PF00450_consen 16 LPVNDNENAHLFYWFFESRN--DPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNK-FANLLFID 92 (415)
T ss_dssp EEECTTTTEEEEEEEEE-SS--GGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGG-TSEEEEE-
T ss_pred EecCCCCCcEEEEEEEEeCC--CCCCccEEEEecCCceeccccccccccCceEEeeccccccccccccccc-ccceEEEe
Confidence 34444567788887776665 23557999999999996532110 0 01123333 37788899
Q ss_pred CCCCCCCCCccccccccCCCCCcHHHHHHHHHHHH-HcCCCCCCcEEEEEeCccHHHHHHHHH----hC------CCcee
Q 004839 533 VRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLI-EKEIVKEHKLAGWGYSAGGLLVAAAIN----CC------PDLFR 601 (728)
Q Consensus 533 ~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~-~~~~~d~~ri~i~G~S~GG~~~~~~~~----~~------p~~f~ 601 (728)
.+-+.||...-........-....+|+..+++.+. ..+.....++.|.|-||||..+..++. +. +=-++
T Consensus 93 ~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLk 172 (415)
T PF00450_consen 93 QPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLK 172 (415)
T ss_dssp -STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEE
T ss_pred ecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccc
Confidence 77555554332211111111223455555555443 345556679999999999987766543 22 22489
Q ss_pred EEEEeCCcccch
Q 004839 602 AVVLEVPFLDAT 613 (728)
Q Consensus 602 a~v~~~p~~d~~ 613 (728)
++++..|++|..
T Consensus 173 Gi~IGng~~dp~ 184 (415)
T PF00450_consen 173 GIAIGNGWIDPR 184 (415)
T ss_dssp EEEEESE-SBHH
T ss_pred cceecCcccccc
Confidence 999999998875
No 258
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.21 E-value=1.9 Score=48.75 Aligned_cols=238 Identities=11% Similarity=0.035 Sum_probs=131.2
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
.+..+.|+--|.+|||....-| +|-|++..+...+.... ......++.||||+.|+-... ..+|-..|.
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klg----QLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e-----DgKVKvWn~ 379 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLG----QLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE-----DGKVKVWNT 379 (893)
T ss_pred eeeEEEecccCCEEEEcCCccc----eEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC-----CCcEEEEec
Confidence 5667788899999999875544 58888877765443322 457788999999987765432 236777776
Q ss_pred CCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCc--eEEEEeecCCEEEEE
Q 004839 203 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL--AHCIVEHHEGFLYLF 280 (728)
Q Consensus 203 ~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~--~~~~~~~dg~~l~~~ 280 (728)
-++- =...|.|.... ...+.|+.+|+.|+-.+-++ .|...|+..- ...+.++....- ....+++.|. +.+.
T Consensus 380 ~Sgf-C~vTFteHts~-Vt~v~f~~~g~~llssSLDG---tVRAwDlkRY-rNfRTft~P~p~QfscvavD~sGe-lV~A 452 (893)
T KOG0291|consen 380 QSGF-CFVTFTEHTSG-VTAVQFTARGNVLLSSSLDG---TVRAWDLKRY-RNFRTFTSPEPIQFSCVAVDPSGE-LVCA 452 (893)
T ss_pred cCce-EEEEeccCCCc-eEEEEEEecCCEEEEeecCC---eEEeeeeccc-ceeeeecCCCceeeeEEEEcCCCC-EEEe
Confidence 5542 23456665543 35688999999876555443 3566676542 223444333222 1223344444 4443
Q ss_pred EcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEE--EEeeCCEEEEEEecCCeeEEEEEecCCCCCCccee
Q 004839 281 TDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVED--VDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVH 358 (728)
Q Consensus 281 tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~--~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~ 358 (728)
...+ .|.|+...++ .++.-+++.+.++ .+.+ +.+.+.. ++...-+.. +++.+.=...
T Consensus 453 G~~d-------~F~IfvWS~q----TGqllDiLsGHEg-PVs~l~f~~~~~~-LaS~SWDkT--VRiW~if~s~------ 511 (893)
T KOG0291|consen 453 GAQD-------SFEIFVWSVQ----TGQLLDILSGHEG-PVSGLSFSPDGSL-LASGSWDKT--VRIWDIFSSS------ 511 (893)
T ss_pred eccc-------eEEEEEEEee----cCeeeehhcCCCC-cceeeEEccccCe-EEeccccce--EEEEEeeccC------
Confidence 3333 4778777766 3555566665443 3444 4444443 333333333 3333321110
Q ss_pred ecccccccccCCCceeeeecCCCccCCCcEEEEEEccCCCCceEEEEECCCC
Q 004839 359 LKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYG 410 (728)
Q Consensus 359 ~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~ 410 (728)
....+++.+..+. +..+.+++..+.+.-.+ +++-.+|.+.+
T Consensus 512 ---~~vEtl~i~sdvl----~vsfrPdG~elaVaTld----gqItf~d~~~~ 552 (893)
T KOG0291|consen 512 ---GTVETLEIRSDVL----AVSFRPDGKELAVATLD----GQITFFDIKEA 552 (893)
T ss_pred ---ceeeeEeecccee----EEEEcCCCCeEEEEEec----ceEEEEEhhhc
Confidence 0123444444433 23456788887664322 35555565443
No 259
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.20 E-value=0.003 Score=57.62 Aligned_cols=52 Identities=25% Similarity=0.301 Sum_probs=43.5
Q ss_pred HHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhh
Q 004839 562 CARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNT 615 (728)
Q Consensus 562 ~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~ 615 (728)
--+|++++.. |.+..+.|.||||++++....++|++|..+|+.+|+.|...+
T Consensus 90 yerYv~eEal--pgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardf 141 (227)
T COG4947 90 YERYVIEEAL--PGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDF 141 (227)
T ss_pred HHHHHHHhhc--CCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHh
Confidence 3445665543 467889999999999999999999999999999999997654
No 260
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=96.20 E-value=0.16 Score=53.11 Aligned_cols=191 Identities=13% Similarity=0.072 Sum_probs=104.6
Q ss_pred EEeeceeeCCC--CCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEE
Q 004839 124 AYEELSEVSPD--HKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 199 (728)
Q Consensus 124 ~~~~~~~~SPD--G~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~ 199 (728)
..++.+.|+|. +.-||-. ..+|. +.++++++-..++... ..+++.++|.|+|+.|.-.+.|..+| +|
T Consensus 218 ~~v~~~~fhP~~~~~~lat~-s~Dgt----vklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWR---lW- 288 (459)
T KOG0272|consen 218 SRVGAAVFHPVDSDLNLATA-SADGT----VKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWR---LW- 288 (459)
T ss_pred cceeeEEEccCCCccceeee-ccCCc----eeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchh---hc-
Confidence 36788999998 5556554 34554 7888988766554322 34789999999999998887776543 33
Q ss_pred EECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCceEE--EEeecCCEE
Q 004839 200 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHC--IVEHHEGFL 277 (728)
Q Consensus 200 ~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~--~~~~dg~~l 277 (728)
|+.+++ .++..|....-..+++|.+||..+. +..-+....| .|+.+ +.-..+........+ .++|.|-.|
T Consensus 289 -D~~tk~--ElL~QEGHs~~v~~iaf~~DGSL~~-tGGlD~~~Rv--WDlRt--gr~im~L~gH~k~I~~V~fsPNGy~l 360 (459)
T KOG0272|consen 289 -DLETKS--ELLLQEGHSKGVFSIAFQPDGSLAA-TGGLDSLGRV--WDLRT--GRCIMFLAGHIKEILSVAFSPNGYHL 360 (459)
T ss_pred -ccccch--hhHhhcccccccceeEecCCCceee-ccCccchhhe--eeccc--CcEEEEecccccceeeEeECCCceEE
Confidence 566653 3445554444345688999998543 3222223344 46666 332333333333333 345655444
Q ss_pred EEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEe--eCCEEEEEEecCCeeEEEE
Q 004839 278 YLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDF--CKTHMALILREGRTYRLCS 345 (728)
Q Consensus 278 ~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~--~~~~lv~~~~~~g~~~l~~ 345 (728)
+- ...+. ..+|+.+.-. .. .-+++... ..+..+-. ..++.+++...+...+|+.
T Consensus 361 AT-gs~Dn------t~kVWDLR~r-----~~-ly~ipAH~-nlVS~Vk~~p~~g~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 361 AT-GSSDN------TCKVWDLRMR-----SE-LYTIPAHS-NLVSQVKYSPQEGYFLVTASYDNTVKIWS 416 (459)
T ss_pred ee-cCCCC------cEEEeeeccc-----cc-ceeccccc-chhhheEecccCCeEEEEcccCcceeeec
Confidence 32 22221 2456654322 11 12233221 12333332 3466777777777666654
No 261
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.19 E-value=0.025 Score=58.25 Aligned_cols=122 Identities=18% Similarity=0.243 Sum_probs=82.3
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHC---C------eEEEEEcCCCCCCCCCcccc
Q 004839 475 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDR---G------WVVAFADVRGGGGGGKKWHH 545 (728)
Q Consensus 475 ~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~---G------y~v~~~d~RG~g~~G~~~~~ 545 (728)
-.|.+||...+.|+..+..++.--|++.||.||+- ..|...+..|.+- | |-|++|-.+|.|-+
T Consensus 131 IeGL~iHFlhvk~p~~k~~k~v~PlLl~HGwPGsv--~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPGygwS------ 202 (469)
T KOG2565|consen 131 IEGLKIHFLHVKPPQKKKKKKVKPLLLLHGWPGSV--REFYKFIPLLTDPKRHGNESDYAFEVIAPSLPGYGWS------ 202 (469)
T ss_pred hcceeEEEEEecCCccccCCcccceEEecCCCchH--HHHHhhhhhhcCccccCCccceeEEEeccCCCCcccC------
Confidence 36888998777777654444444467889999864 4455556666653 3 67999999988743
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeC
Q 004839 546 DGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEV 607 (728)
Q Consensus 546 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~ 607 (728)
++....|-+..+-..-..+-+...|+ ++-.|-|+-+|..++..++..+|+.+.+.=+..
T Consensus 203 d~~sk~GFn~~a~ArvmrkLMlRLg~---nkffiqGgDwGSiI~snlasLyPenV~GlHlnm 261 (469)
T KOG2565|consen 203 DAPSKTGFNAAATARVMRKLMLRLGY---NKFFIQGGDWGSIIGSNLASLYPENVLGLHLNM 261 (469)
T ss_pred cCCccCCccHHHHHHHHHHHHHHhCc---ceeEeecCchHHHHHHHHHhhcchhhhHhhhcc
Confidence 33333444444333323333445566 789999999999999999999999876654433
No 262
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.13 E-value=1.2 Score=45.89 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=41.7
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCC-ceeccCccc--eeeeEEEecCCCEEEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSG-ALCSKPQAV--RVSNIAWAKDGQALIYV 186 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg-~~~~~~~~~--~~~~~~WspDg~~l~y~ 186 (728)
..+--.|||||++|.-+.+.-.+.+-.|-|+|.+.+ +.+...... .--.+.|.|||+.|+..
T Consensus 52 FyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 52 FYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred EecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 455567999999986665544455667999999833 222222222 23468899999988775
No 263
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.12 E-value=0.7 Score=46.70 Aligned_cols=108 Identities=13% Similarity=0.199 Sum_probs=63.6
Q ss_pred ceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccC-c-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCC
Q 004839 128 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP-Q-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 205 (728)
Q Consensus 128 ~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~-~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~ 205 (728)
..+||+-|.+||... .+|. |.++|+.|-..-... . .-.+..++||+||+.|+-.+ +...+-..|+-.+
T Consensus 28 ~~~Fs~~G~~lAvGc-~nG~----vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS-----~D~si~lwDl~~g 97 (405)
T KOG1273|consen 28 CCQFSRWGDYLAVGC-ANGR----VVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSS-----RDWSIKLWDLLKG 97 (405)
T ss_pred eEEeccCcceeeeec-cCCc----EEEEEccccchhhhhhccccceeEEEecCCCCEeeeec-----CCceeEEEeccCC
Confidence 456999999999986 4664 889999886533221 1 23578899999999776553 2345666777655
Q ss_pred C-ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 206 D-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 206 ~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
. ..++.|..+ ..+.+|.|-.+-.++.+--.. .-++++..+
T Consensus 98 s~l~rirf~sp----v~~~q~hp~k~n~~va~~~~~--sp~vi~~s~ 138 (405)
T KOG1273|consen 98 SPLKRIRFDSP----VWGAQWHPRKRNKCVATIMEE--SPVVIDFSD 138 (405)
T ss_pred CceeEEEccCc----cceeeeccccCCeEEEEEecC--CcEEEEecC
Confidence 4 233333221 123456664443333322111 145667665
No 264
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.11 E-value=0.12 Score=56.93 Aligned_cols=123 Identities=11% Similarity=0.132 Sum_probs=74.9
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceec-cC--c--cceeeeEEEecCCCEEEEEEecCCCCcceeEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS-KP--Q--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 199 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~-~~--~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~ 199 (728)
.+...++||||++|||+.-. +..||-+..+....+. +. . .-....+.++-|+..+++...+ ..++..
T Consensus 384 nIs~~aiSPdg~~Ia~st~~----~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~----~~~le~ 455 (691)
T KOG2048|consen 384 NISCAAISPDGNLIAISTVS----RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKN----IFSLEE 455 (691)
T ss_pred ceeeeccCCCCCEEEEeecc----ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecc----cceeEE
Confidence 56777899999999998632 1334444443321111 10 0 1245678899999999998633 235666
Q ss_pred EECCCCC-ceeEEeee-cCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEee
Q 004839 200 SIIGSTD-EDALLLEE-SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIW 260 (728)
Q Consensus 200 ~~l~t~~-~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~ 260 (728)
..+.++. +...-... ........+..|+||.||+..+. ...|+++++++ .+.+.+.
T Consensus 456 ~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t---~g~I~v~nl~~--~~~~~l~ 513 (691)
T KOG2048|consen 456 FELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST---RGQIFVYNLET--LESHLLK 513 (691)
T ss_pred EEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec---cceEEEEEccc--ceeecch
Confidence 6666654 21111111 12233456788999999988774 35799999998 4444444
No 265
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=96.08 E-value=0.05 Score=60.07 Aligned_cols=119 Identities=13% Similarity=0.138 Sum_probs=73.7
Q ss_pred eEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceec-cCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEE
Q 004839 123 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS-KPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 200 (728)
Q Consensus 123 ~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~-~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~ 200 (728)
.+.+.....||+|+.||-.-.....+...|++++..+-...+ +.. .-.+..++|||||+.|+-+..|+ ...||-.
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR---t~sl~~~ 601 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR---TVSLYEV 601 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCc---eEEeeee
Confidence 468889999999999998766666677889999987754433 211 23678899999999988776543 2344433
Q ss_pred ECCCCCceeEEe--eecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEE
Q 004839 201 IIGSTDEDALLL--EESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLI 247 (728)
Q Consensus 201 ~l~t~~~~~lv~--~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~ 247 (728)
.....+..-| .....+..-+..|+||++| +++++++..-.+|..
T Consensus 602 --~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~-FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 602 --QEDIKDEFRFACLKAHTRIIWDCSWSPDEKY-FATASRDKKVKVWEE 647 (764)
T ss_pred --ecccchhhhhccccccceEEEEcccCcccce-eEEecCCceEEEEec
Confidence 2111111111 1222233446789999999 445554433344433
No 266
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=96.07 E-value=0.036 Score=55.34 Aligned_cols=96 Identities=21% Similarity=0.164 Sum_probs=63.0
Q ss_pred EEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHH-HHHHHHcCCCCCCc
Q 004839 498 GLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISC-ARFLIEKEIVKEHK 576 (728)
Q Consensus 498 ~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~~r 576 (728)
.|+++|++.++. ..|....+.|..+++.|+.++++|.+.. .....+++++++. ++.+.+... ..+
T Consensus 2 ~lf~~p~~gG~~--~~y~~la~~l~~~~~~v~~i~~~~~~~~----------~~~~~si~~la~~y~~~I~~~~~--~gp 67 (229)
T PF00975_consen 2 PLFCFPPAGGSA--SSYRPLARALPDDVIGVYGIEYPGRGDD----------EPPPDSIEELASRYAEAIRARQP--EGP 67 (229)
T ss_dssp EEEEESSTTCSG--GGGHHHHHHHTTTEEEEEEECSTTSCTT----------SHEESSHHHHHHHHHHHHHHHTS--SSS
T ss_pred eEEEEcCCccCH--HHHHHHHHhCCCCeEEEEEEecCCCCCC----------CCCCCCHHHHHHHHHHHhhhhCC--CCC
Confidence 578888876633 5677788888776799999999987621 1122466666543 333333221 138
Q ss_pred EEEEEeCccHHHHHHHHHh---CCCceeEEEEeC
Q 004839 577 LAGWGYSAGGLLVAAAINC---CPDLFRAVVLEV 607 (728)
Q Consensus 577 i~i~G~S~GG~~~~~~~~~---~p~~f~a~v~~~ 607 (728)
..++|||+||.++..+|.+ ....+..+++..
T Consensus 68 ~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD 101 (229)
T PF00975_consen 68 YVLAGWSFGGILAFEMARQLEEAGEEVSRLILID 101 (229)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHTT-SESEEEEES
T ss_pred eeehccCccHHHHHHHHHHHHHhhhccCceEEec
Confidence 9999999999999988754 233455666555
No 267
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=96.07 E-value=0.17 Score=50.10 Aligned_cols=99 Identities=16% Similarity=0.121 Sum_probs=63.5
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 203 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~ 203 (728)
.+....+||||...|+. ++.-.++++|+..++.+.-.. ...+..++|+|+--+|.-.. ...|-+.++.
T Consensus 194 ~v~t~~vSpDGslcasG-----gkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at------~~sIkIwdl~ 262 (315)
T KOG0279|consen 194 YVNTVTVSPDGSLCASG-----GKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT------ATSIKIWDLE 262 (315)
T ss_pred cEEEEEECCCCCEEecC-----CCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc------CCceEEEecc
Confidence 56778899999999884 333458999999998654322 45678999999854444331 1136666766
Q ss_pred CCC-ceeEEeeec------CcceEEEEEEcCCCCEEEE
Q 004839 204 STD-EDALLLEES------NENVYVNIRHTKDFHFVCV 234 (728)
Q Consensus 204 t~~-~~~lv~~~~------~~~~~~~~~~SpDg~~l~~ 234 (728)
++. .+.+-.+.. ....-++++||+||..|+-
T Consensus 263 ~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~ 300 (315)
T KOG0279|consen 263 SKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFA 300 (315)
T ss_pred chhhhhhccccccccccccCCcEEEEEEEcCCCcEEEe
Confidence 653 222211111 1234568899999998753
No 268
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.07 E-value=1.5 Score=52.66 Aligned_cols=195 Identities=11% Similarity=0.011 Sum_probs=98.5
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCc----ee--c---cCccceeeeEEEecCCCEEEEEEecCCCCcc
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA----LC--S---KPQAVRVSNIAWAKDGQALIYVVTDQNKRPY 195 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~----~~--~---~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~ 195 (728)
.+..+.|||||++||-.. .++ .|.|+|+.+.. .. . ......+..+.|++....++.+... ..
T Consensus 485 ~V~~i~fs~dg~~latgg-~D~----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~----Dg 555 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAG-VNK----KIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNF----EG 555 (793)
T ss_pred cEEEEEECCCCCEEEEEe-CCC----EEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeC----CC
Confidence 467789999999988764 333 38899976421 10 0 1112345678998864334444332 23
Q ss_pred eeEEEECCCCCceeEEeeecCcceEEEEEEcC-CCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCceEEEEe-ec
Q 004839 196 QIYCSIIGSTDEDALLLEESNENVYVNIRHTK-DFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVE-HH 273 (728)
Q Consensus 196 ~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~-~d 273 (728)
.|.+.|+.+++. ...+.... .....+.|+| |+.+|+..+.+ ..|.+.|+.++. ....+..........+. ++
T Consensus 556 ~v~lWd~~~~~~-~~~~~~H~-~~V~~l~~~p~~~~~L~Sgs~D---g~v~iWd~~~~~-~~~~~~~~~~v~~v~~~~~~ 629 (793)
T PLN00181 556 VVQVWDVARSQL-VTEMKEHE-KRVWSIDYSSADPTLLASGSDD---GSVKLWSINQGV-SIGTIKTKANICCVQFPSES 629 (793)
T ss_pred eEEEEECCCCeE-EEEecCCC-CCEEEEEEcCCCCCEEEEEcCC---CEEEEEECCCCc-EEEEEecCCCeEEEEEeCCC
Confidence 677778876542 22233222 2345678886 67766544332 357788887632 22222221111122232 33
Q ss_pred CCEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecC
Q 004839 274 EGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLP 349 (728)
Q Consensus 274 g~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~ 349 (728)
|..|+. ...++ .|...++. .. ......+.. ....+..+.+.++..++....++. |.++++.
T Consensus 630 g~~lat-gs~dg--------~I~iwD~~-~~-~~~~~~~~~--h~~~V~~v~f~~~~~lvs~s~D~~--ikiWd~~ 690 (793)
T PLN00181 630 GRSLAF-GSADH--------KVYYYDLR-NP-KLPLCTMIG--HSKTVSYVRFVDSSTLVSSSTDNT--LKLWDLS 690 (793)
T ss_pred CCEEEE-EeCCC--------eEEEEECC-CC-CccceEecC--CCCCEEEEEEeCCCEEEEEECCCE--EEEEeCC
Confidence 444443 33332 34455544 21 111222222 223456666665555666666664 5556554
No 269
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=95.95 E-value=0.94 Score=48.76 Aligned_cols=142 Identities=14% Similarity=0.248 Sum_probs=91.8
Q ss_pred ceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc----cceeeeEEEecCC--CEEEEEEecCCCCcceeEEEE
Q 004839 128 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAKDG--QALIYVVTDQNKRPYQIYCSI 201 (728)
Q Consensus 128 ~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg--~~l~y~~~~~~~~~~~v~~~~ 201 (728)
.++||-|.+++|+.+ |+ .|+|.++ |+..-+... ..++..|.|||-| ..|+|-.....+.+..+-.+.
T Consensus 136 ~~k~s~~D~y~ARvv---~~---sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~s 208 (561)
T COG5354 136 VLKFSIDDKYVARVV---GS---SLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILS 208 (561)
T ss_pred eeeeeecchhhhhhc---cC---eEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEE
Confidence 468999999999984 22 3899998 554333221 4578899999964 467776555555666666666
Q ss_pred CCCCC--ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCC--------ceEEEEEeCCCCCCCeEEeeecCC-ceEEEE
Q 004839 202 IGSTD--EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT--------SSKVFLINAADPFSGLTLIWECEG-LAHCIV 270 (728)
Q Consensus 202 l~t~~--~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~--------~~~l~~~dl~~~~~~~~~l~~~~~-~~~~~~ 270 (728)
|..+. ...-++.-.+ +.+.|-+.|++|++....+. .+.||++++.. ..........+ ...+.+
T Consensus 209 Ip~~s~l~tk~lfk~~~----~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~~pVhdf~W 282 (561)
T COG5354 209 IPKNSVLVTKNLFKVSG----VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPVEKDLKDPVHDFTW 282 (561)
T ss_pred ccCCCeeeeeeeEeecc----cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--cccceeccccccceeeee
Confidence 66443 1222333222 45789999999988764332 27899999975 22333223233 355678
Q ss_pred eecCCEEEEEEc
Q 004839 271 EHHEGFLYLFTD 282 (728)
Q Consensus 271 ~~dg~~l~~~tn 282 (728)
+++++.|.+++-
T Consensus 283 ~p~S~~F~vi~g 294 (561)
T COG5354 283 EPLSSRFAVISG 294 (561)
T ss_pred cccCCceeEEec
Confidence 899999988874
No 270
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=95.84 E-value=0.33 Score=48.96 Aligned_cols=47 Identities=9% Similarity=-0.005 Sum_probs=39.2
Q ss_pred CCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEE--EcCCCCCCCc
Q 004839 656 VLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEEN 707 (728)
Q Consensus 656 ~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~ 707 (728)
..+|.|++.+..|..|++.+.+++++..++.|. .|.. +.+.+|..--
T Consensus 177 ~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~-----~V~~~~f~~S~HV~H~ 225 (240)
T PF05705_consen 177 SRCPRLYLYSKADPLIPWRDVEEHAEEARRKGW-----DVRAEKFEDSPHVAHL 225 (240)
T ss_pred CCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCC-----eEEEecCCCCchhhhc
Confidence 568999999999999999999999999999884 3433 7788887544
No 271
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=1.7 Score=47.27 Aligned_cols=157 Identities=13% Similarity=0.101 Sum_probs=95.3
Q ss_pred eeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCcc-ceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCC
Q 004839 126 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQA-VRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 204 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t 204 (728)
-....++|+|+++... ..+ ...+.++|.++......... ..-..++++||++.+|.+.... ....+..+|-.+
T Consensus 76 p~~i~v~~~~~~vyv~-~~~---~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~--~~~~vsvid~~t 149 (381)
T COG3391 76 PAGVAVNPAGNKVYVT-TGD---SNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN--GNNTVSVIDAAT 149 (381)
T ss_pred ccceeeCCCCCeEEEe-cCC---CCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc--CCceEEEEeCCC
Confidence 3456789999977443 333 23589999777655443222 2456789999999998874321 345788888777
Q ss_pred CCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEE------eeecCCceEEEEeecCCEEE
Q 004839 205 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTL------IWECEGLAHCIVEHHEGFLY 278 (728)
Q Consensus 205 ~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~------l~~~~~~~~~~~~~dg~~l~ 278 (728)
......++....+ .++.++|+|+.+++.. ...+.|.++|.++. .... +..........++++|.++|
T Consensus 150 ~~~~~~~~vG~~P---~~~a~~p~g~~vyv~~--~~~~~v~vi~~~~~--~v~~~~~~~~~~~~~~P~~i~v~~~g~~~y 222 (381)
T COG3391 150 NKVTATIPVGNTP---TGVAVDPDGNKVYVTN--SDDNTVSVIDTSGN--SVVRGSVGSLVGVGTGPAGIAVDPDGNRVY 222 (381)
T ss_pred CeEEEEEecCCCc---ceEEECCCCCeEEEEe--cCCCeEEEEeCCCc--ceeccccccccccCCCCceEEECCCCCEEE
Confidence 6522223332222 4678999999988776 34567899997662 2221 11112222345678888777
Q ss_pred EEEcCCccCCCCCceEEEEeeCC
Q 004839 279 LFTDAAKEGQEADNHYLLRCPVD 301 (728)
Q Consensus 279 ~~tn~~~~~~~~~~~~l~~~~~~ 301 (728)
+.-.... ...+...+..
T Consensus 223 V~~~~~~------~~~v~~id~~ 239 (381)
T COG3391 223 VANDGSG------SNNVLKIDTA 239 (381)
T ss_pred EEeccCC------CceEEEEeCC
Confidence 7544331 1346666654
No 272
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.81 E-value=0.16 Score=52.27 Aligned_cols=114 Identities=12% Similarity=0.087 Sum_probs=70.3
Q ss_pred EEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEE
Q 004839 124 AYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 201 (728)
Q Consensus 124 ~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~ 201 (728)
..+..+++++++.+|||-.++.. .+|+|+|+.+=+...... .+....+++++||..|+-. ++ +..-|..+.
T Consensus 130 ~gl~AlS~n~~n~ylAyp~s~t~---GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATA-Se---KGTVIRVf~ 202 (391)
T KOG2110|consen 130 KGLCALSPNNANCYLAYPGSTTS---GDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATA-SE---KGTVIRVFS 202 (391)
T ss_pred cceEeeccCCCCceEEecCCCCC---ceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEe-cc---CceEEEEEE
Confidence 35667778888889999755442 458999987754433222 5567889999999877554 33 233444555
Q ss_pred CCCCCceeEEeeecCc---ceEEEEEEcCCCCEEEEEEcCCCceEEEEEe
Q 004839 202 IGSTDEDALLLEESNE---NVYVNIRHTKDFHFVCVHTFSTTSSKVFLIN 248 (728)
Q Consensus 202 l~t~~~~~lv~~~~~~---~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d 248 (728)
+.+++ .+++--.+ .-..+++||||+++|..+++.++ =+|+.++
T Consensus 203 v~~G~---kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-VHiFKL~ 248 (391)
T KOG2110|consen 203 VPEGQ---KLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-VHIFKLE 248 (391)
T ss_pred cCCcc---EeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-EEEEEec
Confidence 55543 23322111 12346899999999887776542 2344443
No 273
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=95.81 E-value=0.062 Score=57.85 Aligned_cols=117 Identities=17% Similarity=0.034 Sum_probs=76.1
Q ss_pred CccEEEEEcC-CCCCCcCccc-HHHHHHHHH-CCeEEEEEcCCCCCCC---CCccccccccCCCCCcHHHHHHHHHHHHH
Q 004839 495 QNPGLLHGHG-AYGELLDKRW-RSELKSLLD-RGWVVAFADVRGGGGG---GKKWHHDGRRTKKLNSIKDFISCARFLIE 568 (728)
Q Consensus 495 ~~P~vv~~hG-g~~~~~~~~~-~~~~~~l~~-~Gy~v~~~d~RG~g~~---G~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 568 (728)
..|++|++-| |+........ ...+..||+ .|..|+....|=.|.. +..=....+...-...+.|+...++.+-.
T Consensus 85 ~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~ 164 (514)
T KOG2182|consen 85 GGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNA 164 (514)
T ss_pred CCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHh
Confidence 3589999887 3333111111 123444444 7999999999976632 11100011111122356788777777764
Q ss_pred c-CCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 004839 569 K-EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD 611 (728)
Q Consensus 569 ~-~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d 611 (728)
+ +.-|+.+.+.+|+||-|.|++|+=..+|++..++|+.++.+.
T Consensus 165 k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv~ 208 (514)
T KOG2182|consen 165 KFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPVL 208 (514)
T ss_pred hcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeeccccccee
Confidence 4 566777999999999999999999999999988888776543
No 274
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=95.77 E-value=0.033 Score=59.68 Aligned_cols=57 Identities=19% Similarity=0.273 Sum_probs=43.4
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYV 186 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~ 186 (728)
.+..+.+||||++||..+ .+| .|+|.|..+.+.+-+.. -++.-.++||||||+|+--
T Consensus 292 ~in~f~FS~DG~~LA~VS-qDG----fLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtG 350 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVS-QDG----FLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTG 350 (636)
T ss_pred cccceeEcCCCceEEEEe-cCc----eEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEec
Confidence 677888999999999985 555 38999998877554432 2345568999999988654
No 275
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=95.75 E-value=1.3 Score=46.73 Aligned_cols=160 Identities=11% Similarity=0.109 Sum_probs=98.7
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc----cceeeeEEEecCCCEEEEEEecCCCCcceeEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 200 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~ 200 (728)
.+......|.|.|+...++ +| .+-+-|..+|..+.... ...+...++.|||- +|... .....|-++
T Consensus 305 ~V~~ls~h~tgeYllsAs~-d~----~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL--ifgtg---t~d~~vkiw 374 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASN-DG----TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL--IFGTG---TPDGVVKIW 374 (506)
T ss_pred cceeeeeccCCcEEEEecC-Cc----eEEEEEccCCcEEEEEeeccccceeEEeeEcCCce--EEecc---CCCceEEEE
Confidence 3566778899999988753 33 36677888887554332 23578899999983 33322 123467778
Q ss_pred ECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeec--CCceEEEEeecCCEEE
Q 004839 201 IIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC--EGLAHCIVEHHEGFLY 278 (728)
Q Consensus 201 ~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~--~~~~~~~~~~dg~~l~ 278 (728)
|+.++. ..--|..... -.-.++||.+|-||+..+++. .|.+.||.... ..+.+.-. .+...+.++..|..|.
T Consensus 375 dlks~~-~~a~Fpght~-~vk~i~FsENGY~Lat~add~---~V~lwDLRKl~-n~kt~~l~~~~~v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 375 DLKSQT-NVAKFPGHTG-PVKAISFSENGYWLATAADDG---SVKLWDLRKLK-NFKTIQLDEKKEVNSLSFDQSGTYLG 448 (506)
T ss_pred EcCCcc-ccccCCCCCC-ceeEEEeccCceEEEEEecCC---eEEEEEehhhc-ccceeeccccccceeEEEcCCCCeEE
Confidence 887654 2222332222 234678999999998877754 38888886532 23333322 2344566777777776
Q ss_pred EEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEe
Q 004839 279 LFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVF 313 (728)
Q Consensus 279 ~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li 313 (728)
+..+ ..+||.+.-. ...|+.+.
T Consensus 449 ~~g~---------~l~Vy~~~k~----~k~W~~~~ 470 (506)
T KOG0289|consen 449 IAGS---------DLQVYICKKK----TKSWTEIK 470 (506)
T ss_pred eecc---------eeEEEEEecc----cccceeee
Confidence 6522 3678887643 47898764
No 276
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.72 E-value=3.2 Score=43.36 Aligned_cols=162 Identities=12% Similarity=0.138 Sum_probs=82.2
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 203 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~ 203 (728)
....+++|.|||++.+. +..- ...+-|+|++.++.+.... ++.+.-+-|.+++ ++-...| ..+..+.|+
T Consensus 96 ~~~~~~ls~dgk~~~V~-N~TP--a~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~--F~~lC~D-----Gsl~~v~Ld 165 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQ-NFTP--ATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRG--FSMLCGD-----GSLLTVTLD 165 (342)
T ss_dssp -GGGEEE-TTSSEEEEE-EESS--SEEEEEEETTTTEEEEEEEGTSEEEEEEEETTE--EEEEETT-----SCEEEEEET
T ss_pred cccceEEccCCcEEEEE-ccCC--CCeEEEEECCCCceeeeecCCCEEEEEecCCCc--eEEEecC-----CceEEEEEC
Confidence 34567899999998765 3332 2459999999998776543 4555445555432 2222211 134444444
Q ss_pred CC-C---ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeec------C-------Cc-
Q 004839 204 ST-D---EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC------E-------GL- 265 (728)
Q Consensus 204 t~-~---~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~------~-------~~- 265 (728)
.. + ...-+|...++..|....++.++..++|.+..+ .||-+|+.+.. .+...+- + ++
T Consensus 166 ~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G---~v~~~dlsg~~--~~~~~~~~~~t~~e~~~~WrPGG~ 240 (342)
T PF06433_consen 166 ADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEG---NVYSADLSGDS--AKFGKPWSLLTDAEKADGWRPGGW 240 (342)
T ss_dssp STSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTS---EEEEEEETTSS--EEEEEEEESS-HHHHHTTEEE-SS
T ss_pred CCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCC---EEEEEeccCCc--ccccCcccccCccccccCcCCcce
Confidence 22 1 112244433333444556677666666666543 68999987733 2222111 0 11
Q ss_pred eEEEEeecCCEEEEEEcCCccCCC-CCceEEEEeeCC
Q 004839 266 AHCIVEHHEGFLYLFTDAAKEGQE-ADNHYLLRCPVD 301 (728)
Q Consensus 266 ~~~~~~~dg~~l~~~tn~~~~~~~-~~~~~l~~~~~~ 301 (728)
....+....++||++-+.+.+... .....|+.+|+.
T Consensus 241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence 112333456788887764432211 113578888876
No 277
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.70 E-value=0.13 Score=57.76 Aligned_cols=135 Identities=8% Similarity=-0.012 Sum_probs=80.2
Q ss_pred eeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCCce
Q 004839 130 EVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDED 208 (728)
Q Consensus 130 ~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~ 208 (728)
-++|||+.|.-. ......+.++|.++.+...... ..+.....++|||+++|.+.++.. ....+-.++.++. ..
T Consensus 199 PlpnDGk~l~~~----~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE-~G~tl~em~a~e~-d~ 272 (635)
T PRK02888 199 PLPNDGKDLDDP----KKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSE-EGVTLAEMMAAER-DW 272 (635)
T ss_pred ccCCCCCEeecc----cceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcc-cCcceeeeccccC-ce
Confidence 378999977222 3334568899999876544322 345567899999999988876532 2234444444322 22
Q ss_pred eEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC----CCCCeEEeeecCCceEEEEeecCCEEEEE
Q 004839 209 ALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD----PFSGLTLIWECEGLAHCIVEHHEGFLYLF 280 (728)
Q Consensus 209 ~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~----~~~~~~~l~~~~~~~~~~~~~dg~~l~~~ 280 (728)
.++|.-... -.+.+|||+.++. .+.|-++|..+ +......|.-........++|||+++|+.
T Consensus 273 ~vvfni~~i-----ea~vkdGK~~~V~-----gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVa 338 (635)
T PRK02888 273 VVVFNIARI-----EEAVKAGKFKTIG-----GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIAN 338 (635)
T ss_pred EEEEchHHH-----HHhhhCCCEEEEC-----CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEe
Confidence 223322111 1457899988862 35788999876 21222333333333455788999987763
No 278
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=95.69 E-value=1.8 Score=45.47 Aligned_cols=134 Identities=10% Similarity=-0.001 Sum_probs=78.2
Q ss_pred EEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcc-cHHHHHHHHHCCeEEEEEcCCCCC-CCCCcccc
Q 004839 468 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKR-WRSELKSLLDRGWVVAFADVRGGG-GGGKKWHH 545 (728)
Q Consensus 468 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~-~~~~~~~l~~~Gy~v~~~d~RG~g-~~G~~~~~ 545 (728)
|.+++.. ++.+..+ |++|... +.+.-+||++||...+...+. -....+.|.++||+.+....+.-- ..-..+..
T Consensus 63 e~~~L~~-~~~~fla-L~~~~~~--~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~ 138 (310)
T PF12048_consen 63 EVQWLQA-GEERFLA-LWRPANS--AKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRAT 138 (310)
T ss_pred hcEEeec-CCEEEEE-EEecccC--CCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCC
Confidence 3444443 5566665 6666542 234568999998543332222 345678899999999998877511 00000000
Q ss_pred -------ccccC---------------------CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCC
Q 004839 546 -------DGRRT---------------------KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCP 597 (728)
Q Consensus 546 -------~~~~~---------------------~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p 597 (728)
++... .....+.-+.+++.++.+++. .+|+++|++.|+++++.++...+
T Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~~---~~ivlIg~G~gA~~~~~~la~~~ 215 (310)
T PF12048_consen 139 EAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQGG---KNIVLIGHGTGAGWAARYLAEKP 215 (310)
T ss_pred CCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcCC---ceEEEEEeChhHHHHHHHHhcCC
Confidence 00000 001122233455556655543 45999999999999999998765
Q ss_pred C-ceeEEEEeCC
Q 004839 598 D-LFRAVVLEVP 608 (728)
Q Consensus 598 ~-~f~a~v~~~p 608 (728)
. ...+.|++.+
T Consensus 216 ~~~~daLV~I~a 227 (310)
T PF12048_consen 216 PPMPDALVLINA 227 (310)
T ss_pred CcccCeEEEEeC
Confidence 4 4678887766
No 279
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=95.65 E-value=0.08 Score=53.11 Aligned_cols=107 Identities=15% Similarity=0.145 Sum_probs=69.5
Q ss_pred eeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc---cceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 126 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
+--+.||.|...||-.+ .+|. |.||.+.||.-++... ..++..+.||.|+..|+-...| ..+..|-+
T Consensus 266 Vlci~FSRDsEMlAsGs-qDGk----IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD-----~tvRiHGl 335 (508)
T KOG0275|consen 266 VLCISFSRDSEMLASGS-QDGK----IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFD-----QTVRIHGL 335 (508)
T ss_pred eEEEeecccHHHhhccC-cCCc----EEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccccc-----ceEEEecc
Confidence 44567899998888764 4453 8999999998665332 3467889999999988766544 24667777
Q ss_pred CCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEE
Q 004839 203 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVF 245 (728)
Q Consensus 203 ~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~ 245 (728)
.+++-- .-|. ....|.....+++||.+|+- ++++++-.+|
T Consensus 336 KSGK~L-KEfr-GHsSyvn~a~ft~dG~~iis-aSsDgtvkvW 375 (508)
T KOG0275|consen 336 KSGKCL-KEFR-GHSSYVNEATFTDDGHHIIS-ASSDGTVKVW 375 (508)
T ss_pred ccchhH-HHhc-CccccccceEEcCCCCeEEE-ecCCccEEEe
Confidence 776510 0111 12234456788999998754 4444444444
No 280
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.63 E-value=0.022 Score=65.86 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=67.7
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
.+.++.||||+++||-.. .+ ..|.|++..+.+.+.... ...+.++.|-|-|++|+-...| +.-.||+..
T Consensus 131 DV~Dv~Wsp~~~~lvS~s-~D----nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdD---rtikvwrt~- 201 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVS-LD----NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDD---RTLKVWRTS- 201 (942)
T ss_pred ccceeccCCCccEEEEec-cc----ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCC---ceEEEEEcc-
Confidence 688899999999887653 22 348999999986555433 3457789999999988665433 445666622
Q ss_pred CCCCceeE---Eeee-cCcceEEEEEEcCCCCEEEEEE
Q 004839 203 GSTDEDAL---LLEE-SNENVYVNIRHTKDFHFVCVHT 236 (728)
Q Consensus 203 ~t~~~~~l---v~~~-~~~~~~~~~~~SpDg~~l~~~~ 236 (728)
+-+.... .|++ ....+|..++|||||+||+...
T Consensus 202 -dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 202 -DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred -cceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 1111111 2332 2235678899999999986543
No 281
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=95.61 E-value=0.026 Score=61.12 Aligned_cols=86 Identities=17% Similarity=0.173 Sum_probs=63.9
Q ss_pred ccEEEEEcCC-CCCCcCcccHHHHHHHHH-CCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHc----
Q 004839 496 NPGLLHGHGA-YGELLDKRWRSELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEK---- 569 (728)
Q Consensus 496 ~P~vv~~hGg-~~~~~~~~~~~~~~~l~~-~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---- 569 (728)
.-+|+++||| +-.+...+.......|+. .|..|+.+||.-.. ....+...+.+.-+.-|++++
T Consensus 396 ~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLAP-----------EaPFPRaleEv~fAYcW~inn~all 464 (880)
T KOG4388|consen 396 RSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLAP-----------EAPFPRALEEVFFAYCWAINNCALL 464 (880)
T ss_pred ceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccCC-----------CCCCCcHHHHHHHHHHHHhcCHHHh
Confidence 3588999996 444544555655555554 79999999997544 345567888998899999875
Q ss_pred CCCCCCcEEEEEeCccHHHHHHHH
Q 004839 570 EIVKEHKLAGWGYSAGGLLVAAAI 593 (728)
Q Consensus 570 ~~~d~~ri~i~G~S~GG~~~~~~~ 593 (728)
|+ ..+||++.|.|+||.+.+.++
T Consensus 465 G~-TgEriv~aGDSAGgNL~~~Va 487 (880)
T KOG4388|consen 465 GS-TGERIVLAGDSAGGNLCFTVA 487 (880)
T ss_pred Cc-ccceEEEeccCCCcceeehhH
Confidence 44 458999999999998776554
No 282
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=95.61 E-value=0.028 Score=38.62 Aligned_cols=32 Identities=19% Similarity=0.515 Sum_probs=21.5
Q ss_pred cceeeeEEEecCCCEEEEEEecCCCCcceeEE
Q 004839 168 AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 199 (728)
Q Consensus 168 ~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~ 199 (728)
......+.|||||++|+|++........+||+
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 34567899999999999998754223445663
No 283
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.53 Score=52.37 Aligned_cols=83 Identities=22% Similarity=0.354 Sum_probs=63.5
Q ss_pred CCCcEEEeecccccccCCceEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCE
Q 004839 104 KKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQA 182 (728)
Q Consensus 104 ~~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~ 182 (728)
+.++++++|+|.+..+ +...+..-++|-|++|+||.....|.+.-.|..+..+.|+...... .-..+.+.|.+|++.
T Consensus 106 ~~e~~~~ld~~~~~dd--~tV~Ld~~~~aed~~Y~~~gls~~spD~~~ia~~~~~~~~e~~~~v~~~~~~~~~~~~~~~g 183 (712)
T KOG2237|consen 106 EKEEEVFLDPNALGDD--GTVLLDTNQIAEDFKYFAYGLSESSPDHKYIAYTKDTEGKELFTVVIDVKFSGPVWTHDGKG 183 (712)
T ss_pred hcccceecCCccCCCC--ceEEechhhhhhcCCceEEeecccCCCceEEEEEEcCCCCccceeeeeeccCCceeeccCCc
Confidence 3567899999998775 4778888899999999999988778777677766666665444333 346678899999988
Q ss_pred EEEEEe
Q 004839 183 LIYVVT 188 (728)
Q Consensus 183 l~y~~~ 188 (728)
++|.+.
T Consensus 184 ~~y~~w 189 (712)
T KOG2237|consen 184 VSYLAW 189 (712)
T ss_pred eEeeee
Confidence 888754
No 284
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=95.57 E-value=0.19 Score=48.98 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=73.8
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 203 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~ 203 (728)
.+....+|+||++|..+ + ++ .|.++|.++=+.+.-.. +.++.+..-+|+. .+|.. .++...+|.+|..
T Consensus 186 ~VtSlEvs~dG~ilTia-~-gs----sV~Fwdaksf~~lKs~k~P~nV~SASL~P~k-~~fVa----Gged~~~~kfDy~ 254 (334)
T KOG0278|consen 186 PVTSLEVSQDGRILTIA-Y-GS----SVKFWDAKSFGLLKSYKMPCNVESASLHPKK-EFFVA----GGEDFKVYKFDYN 254 (334)
T ss_pred CCcceeeccCCCEEEEe-c-Cc----eeEEeccccccceeeccCccccccccccCCC-ceEEe----cCcceEEEEEecc
Confidence 46678899999988765 2 22 38899998866554332 5677888899987 44443 2445689999998
Q ss_pred CCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 204 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 204 t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
|+.+ .-.|......-...+.+||||.. +.+.+.+++-.||......
T Consensus 255 TgeE-i~~~nkgh~gpVhcVrFSPdGE~-yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 255 TGEE-IGSYNKGHFGPVHCVRFSPDGEL-YASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CCce-eeecccCCCCceEEEEECCCCce-eeccCCCceEEEEEecCCC
Confidence 8853 33342222222356899999974 3333444556788776654
No 285
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=95.50 E-value=0.13 Score=51.74 Aligned_cols=113 Identities=18% Similarity=0.225 Sum_probs=65.5
Q ss_pred eceeeCCCCCEEEEEEEcCCCcEEEEEEEEC---CCCceeccC---c----cceeeeEEEecCCCEEEEEEecCCCCcce
Q 004839 127 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNL---NSGALCSKP---Q----AVRVSNIAWAKDGQALIYVVTDQNKRPYQ 196 (728)
Q Consensus 127 ~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl---~tg~~~~~~---~----~~~~~~~~WspDg~~l~y~~~~~~~~~~~ 196 (728)
...++||||++||...-+. ++.|+++ +.|+..... . ...+..++|||++++++-++.|.. .+
T Consensus 232 ~~aavSP~GRFia~~gFTp-----DVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~---wr 303 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTP-----DVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK---WR 303 (420)
T ss_pred cceeeCCCCcEEEEecCCC-----CceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc---EE
Confidence 3567999999999875432 2666664 334322211 1 225677899999999987765543 35
Q ss_pred eEEEECCCCC-ceeEEeee------cCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 197 IYCSIIGSTD-EDALLLEE------SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 197 v~~~~l~t~~-~~~lv~~~------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
||-.|+.-.. +|.-+..+ ....-.+.+++||.|+.|++...+ .|.++..++
T Consensus 304 iwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs----~l~~~~se~ 361 (420)
T KOG2096|consen 304 IWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS----DLKVFASED 361 (420)
T ss_pred EeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC----ceEEEEccc
Confidence 6655543211 22111111 111123467899999998876553 456666655
No 286
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=95.49 E-value=0.26 Score=57.37 Aligned_cols=105 Identities=19% Similarity=0.292 Sum_probs=59.8
Q ss_pred EeeceeeCCCCCEEEEEEEcCC-CcEEEEEEEECCCCce--eccCccceeeeEEE--ecCCC-EEEEEEecCCCC-----
Q 004839 125 YEELSEVSPDHKFLAYTMYDKD-NDYFTLSVRNLNSGAL--CSKPQAVRVSNIAW--AKDGQ-ALIYVVTDQNKR----- 193 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g-~e~~~l~v~dl~tg~~--~~~~~~~~~~~~~W--spDg~-~l~y~~~~~~~~----- 193 (728)
.+-.|.|||||++|||.....+ .....|||.||.+... +.+.. +...-++| ..+|. .|+|++...++.
T Consensus 351 ~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~v-e~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~ 429 (912)
T TIGR02171 351 SVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPV-ENAAIPRWRVLENGDTVIVYVSDASNNKDDATF 429 (912)
T ss_pred ceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeec-ccccccceEecCCCCeEEEEEcCCCCCcchhhh
Confidence 4567999999999999334444 2246799999987532 22221 22333344 56665 577886543332
Q ss_pred -cceeEEEECCCCC--ceeEEeeecCcceEEEEEEcCCCCEEEEEE
Q 004839 194 -PYQIYCSIIGSTD--EDALLLEESNENVYVNIRHTKDFHFVCVHT 236 (728)
Q Consensus 194 -~~~v~~~~l~t~~--~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~ 236 (728)
...-|.+....++ +.+.+|+ +.|..+ +|.|.+ |+++.
T Consensus 430 ~~~stw~v~f~~gkfg~p~kl~d---ga~hgg--vs~~~~-lavtg 469 (912)
T TIGR02171 430 AAYSTWQVPFANGKFGTPKKLFD---GAYHGG--VSEDLN-LAVSG 469 (912)
T ss_pred hhcceEEEEecCCCCCCchhhhc---cccccc--cccCCc-eeeeh
Confidence 2346777776664 3344543 334433 355554 44443
No 287
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.47 E-value=0.88 Score=46.29 Aligned_cols=120 Identities=14% Similarity=0.077 Sum_probs=64.9
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceec--cCc--cc-eeeeEEEecCCCEEEEEEecCCCCcceeEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS--KPQ--AV-RVSNIAWAKDGQALIYVVTDQNKRPYQIYC 199 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~--~~~--~~-~~~~~~WspDg~~l~y~~~~~~~~~~~v~~ 199 (728)
.+..|+|+|||...++.. +.... ..+.+..+|+... +.. .. .+..+.+||||.++++...+... .+|+.
T Consensus 67 ~l~~PS~d~~g~~W~v~~---~~~~~-~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~--~~v~v 140 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDD---GSGGV-RVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGG--GRVYV 140 (253)
T ss_pred ccccccccCCCCEEEEEc---CCCce-EEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCC--CeEEE
Confidence 577888999977554442 22222 2333444454332 222 12 68899999999999998765432 56776
Q ss_pred EECCCCC---ceeEE--eee--cCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 200 SIIGSTD---EDALL--LEE--SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 200 ~~l~t~~---~~~lv--~~~--~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
..|.... ...+. ..- ....-..++.|+++++.+++.......... .+...+
T Consensus 141 a~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~-~v~~dG 198 (253)
T PF10647_consen 141 AGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR-LVSVDG 198 (253)
T ss_pred EEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE-EEEccC
Confidence 6553221 11111 000 101123578999999876665554432222 355444
No 288
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.47 E-value=0.32 Score=50.78 Aligned_cols=153 Identities=12% Similarity=0.041 Sum_probs=79.6
Q ss_pred EeeceeeCCCCCEEEEEEE-----cC-CCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCccee
Q 004839 125 YEELSEVSPDHKFLAYTMY-----DK-DNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQI 197 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~-----~~-g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v 197 (728)
.....++.|||++-+=... .. ..+.-.||.+|+.++....... .....+++||||++.+|++-. ...+|
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT----~~~~i 187 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT----PANRI 187 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeC----CCCeE
Confidence 4567788999984432222 11 1223358999986555444433 334567999999998888743 23478
Q ss_pred EEEECCC--CC---ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEe-eecC-CceEEEE
Q 004839 198 YCSIIGS--TD---EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLI-WECE-GLAHCIV 270 (728)
Q Consensus 198 ~~~~l~t--~~---~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l-~~~~-~~~~~~~ 270 (728)
+++++.. .. ....++....+..--+.....||.+ +.+.......|-+++.+. .....+ .+.. .....+-
T Consensus 188 ~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~l--w~~a~~~g~~v~~~~pdG--~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 188 HRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNL--WVAAVWGGGRVVRFNPDG--KLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred EEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCE--EEecccCCceEEEECCCC--cEEEEEECCCCCCccceEe
Confidence 8888752 11 1111221111111123445556653 222222234677777663 122222 2311 1222333
Q ss_pred eecCCEEEEEEcCCc
Q 004839 271 EHHEGFLYLFTDAAK 285 (728)
Q Consensus 271 ~~dg~~l~~~tn~~~ 285 (728)
.++.+.||+.++..+
T Consensus 264 G~~~~~L~iTs~~~~ 278 (307)
T COG3386 264 GPDLNTLYITSARSG 278 (307)
T ss_pred CCCcCEEEEEecCCC
Confidence 466788888887653
No 289
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=95.41 E-value=0.35 Score=48.76 Aligned_cols=131 Identities=18% Similarity=0.294 Sum_probs=86.9
Q ss_pred EEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcC-CCCCC--cCccc-HHHHHHHHHCCeEEEEEcCCCCCCCCCc
Q 004839 467 CEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHG-AYGEL--LDKRW-RSELKSLLDRGWVVAFADVRGGGGGGKK 542 (728)
Q Consensus 467 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hG-g~~~~--~~~~~-~~~~~~l~~~Gy~v~~~d~RG~g~~G~~ 542 (728)
+++..+...-| .|++.++-- ++++.|+++-.|. |.... .-.-| .+..+.++.+ +.|+-+|.+|+-.-...
T Consensus 22 ~~e~~V~T~~G-~v~V~V~Gd----~~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~gAp~ 95 (326)
T KOG2931|consen 22 CQEHDVETAHG-VVHVTVYGD----PKGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQEDGAPS 95 (326)
T ss_pred ceeeeeccccc-cEEEEEecC----CCCCCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccccCCcc
Confidence 55666666667 466655422 2335688999997 32221 11112 2456778888 99999999998642222
Q ss_pred cccccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCc
Q 004839 543 WHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 609 (728)
Q Consensus 543 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~ 609 (728)
+- ...-..+.+|+.+-+-.+++. ..-+-|..+|--+|+|+-...|..||+++-+.|++.+.
T Consensus 96 ~p----~~y~yPsmd~LAd~l~~VL~~--f~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~ 156 (326)
T KOG2931|consen 96 FP----EGYPYPSMDDLADMLPEVLDH--FGLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCD 156 (326)
T ss_pred CC----CCCCCCCHHHHHHHHHHHHHh--cCcceEEEecccccHHHHHHHHhcChhheeEEEEEecC
Confidence 21 121234677777666666643 23367899999999999999999999999999998764
No 290
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=95.35 E-value=0.11 Score=51.31 Aligned_cols=174 Identities=17% Similarity=0.135 Sum_probs=95.2
Q ss_pred EEEEcCCCCCCCCccEEEEEcCCCCCCc--CcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHH
Q 004839 483 TIIYSPKYKKENQNPGLLHGHGAYGELL--DKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFI 560 (728)
Q Consensus 483 ~l~~p~~~~~~~~~P~vv~~hGg~~~~~--~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~ 560 (728)
|+..|+. .-.||++-||.--.. .-.|+...+.|+++||+|++.-|.-+= +... . -......+.
T Consensus 9 wvl~P~~------P~gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tf----DH~~--~---A~~~~~~f~ 73 (250)
T PF07082_consen 9 WVLIPPR------PKGVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTF----DHQA--I---AREVWERFE 73 (250)
T ss_pred EEEeCCC------CCEEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCC----cHHH--H---HHHHHHHHH
Confidence 5666652 226788887633222 235677789999999999998876321 1111 1 112345666
Q ss_pred HHHHHHHHcCCCCCC--cEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhccCCCCCCCcc----cccccCCC
Q 004839 561 SCARFLIEKEIVKEH--KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAA----DYEEFGYP 634 (728)
Q Consensus 561 ~~~~~l~~~~~~d~~--ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~----~~~~~g~p 634 (728)
.|++.|.+.+..++. .+.-+|||+|.-+-+.+....+.--++-|++ .|-| +-....+|+... ...||. |
T Consensus 74 ~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gnili-SFNN---~~a~~aIP~~~~l~~~l~~EF~-P 148 (250)
T PF07082_consen 74 RCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILI-SFNN---FPADEAIPLLEQLAPALRLEFT-P 148 (250)
T ss_pred HHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhccCcccceEEE-ecCC---hHHHhhCchHhhhccccccCcc-C
Confidence 788888876544433 6778999999999988776543222322221 1222 112233333110 011221 2
Q ss_pred CCHHHHHHHHccCcccccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCC
Q 004839 635 GDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVREST 687 (728)
Q Consensus 635 ~~~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~ 687 (728)
.-.+..+.+.++- .+.. .|||.=..|.. .|+..+.+.|+.+.
T Consensus 149 sP~ET~~li~~~Y---~~~r-----nLLIkF~~D~i---Dqt~~L~~~L~~r~ 190 (250)
T PF07082_consen 149 SPEETRRLIRESY---QVRR-----NLLIKFNDDDI---DQTDELEQILQQRF 190 (250)
T ss_pred CHHHHHHHHHHhc---CCcc-----ceEEEecCCCc---cchHHHHHHHhhhc
Confidence 2223334443321 2222 36665556643 48899999998764
No 291
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=95.31 E-value=0.34 Score=51.68 Aligned_cols=119 Identities=14% Similarity=0.187 Sum_probs=83.3
Q ss_pred eeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc---cceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 126 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
+.-+++||--|++.-+...+|. +.+||+.+.....-.. .....+++|+|-+..|+.+. ....+|+.+|+
T Consensus 167 vRll~ys~skr~lL~~asd~G~----VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsV----G~Dkki~~yD~ 238 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDKGA----VTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSV----GYDKKINIYDI 238 (673)
T ss_pred EEEeecccccceeeEeeccCCe----EEEEeccCCCcccchhhhccCCcCcceecCCccceEEEe----cccceEEEeec
Confidence 4467889999999888766663 8899998765432211 22456789999988777664 23458999999
Q ss_pred CCCC-ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEe
Q 004839 203 GSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLI 259 (728)
Q Consensus 203 ~t~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l 259 (728)
++.. .+.++|+.+ +..++++++|.+|++-... .+|+.+|+...+...+.+
T Consensus 239 ~s~~s~~~l~y~~P----lstvaf~~~G~~L~aG~s~---G~~i~YD~R~~k~Pv~v~ 289 (673)
T KOG4378|consen 239 RSQASTDRLTYSHP----LSTVAFSECGTYLCAGNSK---GELIAYDMRSTKAPVAVR 289 (673)
T ss_pred ccccccceeeecCC----cceeeecCCceEEEeecCC---ceEEEEecccCCCCceEe
Confidence 8776 677887643 3457899999998765543 479999997643333333
No 292
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.30 E-value=5.9 Score=47.70 Aligned_cols=112 Identities=12% Similarity=0.058 Sum_probs=67.6
Q ss_pred EeeceeeCCC-CCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEec-CCCEEEEEEecCCCCcceeEEE
Q 004839 125 YEELSEVSPD-HKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAK-DGQALIYVVTDQNKRPYQIYCS 200 (728)
Q Consensus 125 ~~~~~~~SPD-G~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~Wsp-Dg~~l~y~~~~~~~~~~~v~~~ 200 (728)
.+..+.|+|. +++||-. ..+| .|.++|+.+++.+.... ...+..++|+| |+..|+-. .. ...|...
T Consensus 534 ~v~~l~~~~~~~~~las~-~~Dg----~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sg-s~----Dg~v~iW 603 (793)
T PLN00181 534 KLSGICWNSYIKSQVASS-NFEG----VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASG-SD----DGSVKLW 603 (793)
T ss_pred ceeeEEeccCCCCEEEEE-eCCC----eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEE-cC----CCEEEEE
Confidence 3456778775 6666544 4444 49999999987654332 34678899997 66644443 32 2357777
Q ss_pred ECCCCCceeEEeeecCcceEEEEEE-cCCCCEEEEEEcCCCceEEEEEeCCCC
Q 004839 201 IIGSTDEDALLLEESNENVYVNIRH-TKDFHFVCVHTFSTTSSKVFLINAADP 252 (728)
Q Consensus 201 ~l~t~~~~~lv~~~~~~~~~~~~~~-SpDg~~l~~~~~~~~~~~l~~~dl~~~ 252 (728)
|+.++.... .+.... ....+.| +++|++|+..+.+ ..|+++|+.+.
T Consensus 604 d~~~~~~~~-~~~~~~--~v~~v~~~~~~g~~latgs~d---g~I~iwD~~~~ 650 (793)
T PLN00181 604 SINQGVSIG-TIKTKA--NICCVQFPSESGRSLAFGSAD---HKVYYYDLRNP 650 (793)
T ss_pred ECCCCcEEE-EEecCC--CeEEEEEeCCCCCEEEEEeCC---CeEEEEECCCC
Confidence 887654211 222111 2334566 5678887765543 46889998763
No 293
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.21 E-value=0.39 Score=52.01 Aligned_cols=149 Identities=10% Similarity=0.090 Sum_probs=87.1
Q ss_pred eeeCCCCCEEEEEEEcCC-----CcEEEEEEEECCCCcee-c-cCccceeeeEEEecCCCEEEEEEecCCCCcceeEEEE
Q 004839 129 SEVSPDHKFLAYTMYDKD-----NDYFTLSVRNLNSGALC-S-KPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 201 (728)
Q Consensus 129 ~~~SPDG~~lA~~~~~~g-----~e~~~l~v~dl~tg~~~-~-~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~ 201 (728)
+-|--.|++|++-+++-. +-.+++-|..+.....- . +...+.+-.|+|-|.|..+....-......-++|...
T Consensus 399 LhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e 478 (698)
T KOG2314|consen 399 LHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVE 478 (698)
T ss_pred EEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEee
Confidence 458899999999877532 22344444444433211 1 1125578899999999999887654433333455554
Q ss_pred CCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCceEEEEeecCCEEEE
Q 004839 202 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYL 279 (728)
Q Consensus 202 l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~ 279 (728)
... ..-.++. +-+..+...+.|||.|+++++..-......++.+|++-..................++|.|+++.-
T Consensus 479 ~~~-~~~~lVk-~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT 554 (698)
T KOG2314|consen 479 TNI-KKPSLVK-ELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVT 554 (698)
T ss_pred cCC-Cchhhhh-hhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEE
Confidence 322 1223332 223345567899999999998887666678888888631111111222222234456777775443
No 294
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=95.20 E-value=2.5 Score=41.52 Aligned_cols=175 Identities=9% Similarity=0.055 Sum_probs=98.0
Q ss_pred EEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCC-ceeEEeeecCcceEEEEEE
Q 004839 149 YFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD-EDALLLEESNENVYVNIRH 225 (728)
Q Consensus 149 ~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~-~~~lv~~~~~~~~~~~~~~ 225 (728)
..+|+++.+.||.-..... ...+..++.+||++.|+-.. ..+|.++|+.+.. .....|+.... ....+.|
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~------~qhvRlyD~~S~np~Pv~t~e~h~k-NVtaVgF 91 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG------NQHVRLYDLNSNNPNPVATFEGHTK-NVTAVGF 91 (311)
T ss_pred cceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc------CCeeEEEEccCCCCCceeEEeccCC-ceEEEEE
Confidence 3679999999998655433 34567899999998776642 2368888998876 35556655433 3456788
Q ss_pred cCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCceEEEEeecCCEEEEEEcCCccCCCCCceEEEEeeCCCCCC
Q 004839 226 TKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFP 305 (728)
Q Consensus 226 SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~ 305 (728)
--|||+++- ...+++-+|| |+..+ ..+++......+...+-|.++.=+|+.+..+ +.+++ |+..
T Consensus 92 ~~dgrWMyT-gseDgt~kIW--dlR~~--~~qR~~~~~spVn~vvlhpnQteLis~dqsg------~irvW--Dl~~--- 155 (311)
T KOG0315|consen 92 QCDGRWMYT-GSEDGTVKIW--DLRSL--SCQRNYQHNSPVNTVVLHPNQTELISGDQSG------NIRVW--DLGE--- 155 (311)
T ss_pred eecCeEEEe-cCCCceEEEE--eccCc--ccchhccCCCCcceEEecCCcceEEeecCCC------cEEEE--EccC---
Confidence 899999763 3334444444 55442 2223332223333333344444445555443 34444 4431
Q ss_pred CCCC-eEEeecCCCceEEEEEeeC-CEEEEEEecCCeeEEEEEecCC
Q 004839 306 SRTW-ESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLPL 350 (728)
Q Consensus 306 ~~~~-~~li~~~~~~~i~~~~~~~-~~lv~~~~~~g~~~l~~~~l~~ 350 (728)
... .++++ +.+..+..+.+.. +..++..+..| +.++.++..
T Consensus 156 -~~c~~~liP-e~~~~i~sl~v~~dgsml~a~nnkG--~cyvW~l~~ 198 (311)
T KOG0315|consen 156 -NSCTHELIP-EDDTSIQSLTVMPDGSMLAAANNKG--NCYVWRLLN 198 (311)
T ss_pred -CccccccCC-CCCcceeeEEEcCCCcEEEEecCCc--cEEEEEccC
Confidence 112 33444 4457777766554 33344444444 455555543
No 295
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=95.14 E-value=0.43 Score=50.99 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=73.1
Q ss_pred eceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCC
Q 004839 127 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 204 (728)
Q Consensus 127 ~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t 204 (728)
....+|||.+ |+|+.-.+|+ |.|+|+.....++... .++.+.+..++||..|+-.-. ...|...|+.+
T Consensus 513 yALa~spDak-vcFsccsdGn----I~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGl-----DntvRcWDlre 582 (705)
T KOG0639|consen 513 YALAISPDAK-VCFSCCSDGN----IAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL-----DNTVRCWDLRE 582 (705)
T ss_pred hhhhcCCccc-eeeeeccCCc----EEEEEcccceeeecccCCCCCceeEEecCCCceeecCCC-----ccceeehhhhh
Confidence 4567899987 8899888886 9999998876655433 567889999999988865422 23466667655
Q ss_pred CCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCC
Q 004839 205 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 252 (728)
Q Consensus 205 ~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~ 252 (728)
+.+ +.-.+ -.....++..+|.|.||++-..+ +.++++...++
T Consensus 583 grq--lqqhd-F~SQIfSLg~cP~~dWlavGMen---s~vevlh~skp 624 (705)
T KOG0639|consen 583 GRQ--LQQHD-FSSQIFSLGYCPTGDWLAVGMEN---SNVEVLHTSKP 624 (705)
T ss_pred hhh--hhhhh-hhhhheecccCCCccceeeeccc---CcEEEEecCCc
Confidence 421 11000 01112456779999999886653 35777776653
No 296
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.07 E-value=1.3 Score=49.89 Aligned_cols=191 Identities=16% Similarity=0.243 Sum_probs=105.3
Q ss_pred eeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEE-EECCCC
Q 004839 129 SEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC-SIIGST 205 (728)
Q Consensus 129 ~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~-~~l~t~ 205 (728)
..|-|-+++|.... ..|. |-|+|+++...+.... .+.+.+++-+||++.++-...|..-+.+..-. .+.+..
T Consensus 418 ~~Fvpgd~~Iv~G~-k~Ge----l~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt 492 (888)
T KOG0306|consen 418 SKFVPGDRYIVLGT-KNGE----LQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGT 492 (888)
T ss_pred EEecCCCceEEEec-cCCc----eEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcc
Confidence 35678888887775 3443 7888999987665443 45677888899999887765443211111111 111111
Q ss_pred CceeE------EeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeE-EeeecC-CceEEEEeecCCEE
Q 004839 206 DEDAL------LLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLT-LIWECE-GLAHCIVEHHEGFL 277 (728)
Q Consensus 206 ~~~~l------v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~-~l~~~~-~~~~~~~~~dg~~l 277 (728)
+...+ +.+-.+. ...+++||||++|++..-+. +-.||.+|.-. +. .+.... ......+++|.+ +
T Consensus 493 ~~k~lsl~~~rtLel~dd--vL~v~~Spdgk~LaVsLLdn-TVkVyflDtlK----FflsLYGHkLPV~smDIS~DSk-l 564 (888)
T KOG0306|consen 493 QKKVLSLKHTRTLELEDD--VLCVSVSPDGKLLAVSLLDN-TVKVYFLDTLK----FFLSLYGHKLPVLSMDISPDSK-L 564 (888)
T ss_pred cceeeeeccceEEecccc--EEEEEEcCCCcEEEEEeccC-eEEEEEeccee----eeeeecccccceeEEeccCCcC-e
Confidence 11111 1122222 35678999999998876543 34567666422 11 121111 223346677765 4
Q ss_pred EEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeC-CEEEEEEecCCeeEEEEEe
Q 004839 278 YLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVS 347 (728)
Q Consensus 278 ~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~-~~lv~~~~~~g~~~l~~~~ 347 (728)
++....+. |.+++-.+.. +. -+.+++++. .+..+...+ .++++....++ .+..+|
T Consensus 565 ivTgSADK------nVKiWGLdFG-DC----HKS~fAHdD--Svm~V~F~P~~~~FFt~gKD~--kvKqWD 620 (888)
T KOG0306|consen 565 IVTGSADK------NVKIWGLDFG-DC----HKSFFAHDD--SVMSVQFLPKTHLFFTCGKDG--KVKQWD 620 (888)
T ss_pred EEeccCCC------ceEEeccccc-hh----hhhhhcccC--ceeEEEEcccceeEEEecCcc--eEEeec
Confidence 44444443 6788888765 22 234555432 344444444 57777776665 344454
No 297
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=95.03 E-value=0.73 Score=47.49 Aligned_cols=113 Identities=13% Similarity=0.042 Sum_probs=77.4
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccC--ccceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP--QAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
++....||.||.+||-. +-.|. |.|+...+|...... .-..+.-+.|.|-++.|+.-.. ...||...+
T Consensus 108 SVt~~~FshdgtlLATG-dmsG~----v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~-----DGsvWmw~i 177 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLATG-DMSGK----VLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST-----DGSVWMWQI 177 (399)
T ss_pred ceEEEEEccCceEEEec-CCCcc----EEEEEcccCceEEEeecccCceEEEEecccccEEEeecC-----CCcEEEEEC
Confidence 67888899999999876 56664 899999998755432 2346778899998877766543 347999999
Q ss_pred CCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCC
Q 004839 203 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 252 (728)
Q Consensus 203 ~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~ 252 (728)
.+.. ...++.......- .-.+.||||.|+....+ .-|.+.|++++
T Consensus 178 p~~~-~~kv~~Gh~~~ct-~G~f~pdGKr~~tgy~d---gti~~Wn~ktg 222 (399)
T KOG0296|consen 178 PSQA-LCKVMSGHNSPCT-CGEFIPDGKRILTGYDD---GTIIVWNPKTG 222 (399)
T ss_pred CCcc-eeeEecCCCCCcc-cccccCCCceEEEEecC---ceEEEEecCCC
Confidence 8753 2334444333222 23679999998655543 34777788773
No 298
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=95.03 E-value=0.16 Score=55.59 Aligned_cols=116 Identities=18% Similarity=0.154 Sum_probs=70.8
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceecc-Cc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSK-PQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~-~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
.+..++|.|=-.-+.-+. .-..+|.+||+.+++.... .. .+.+.+++|||||+.|+-+..|. .|..|+-
T Consensus 679 KI~slRfHPLAadvLa~a----syd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg-----~~rVy~P 749 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVA----SYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDG-----TLRVYEP 749 (1012)
T ss_pred eEEEEEecchhhhHhhhh----hccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCc-----eEEEeCC
Confidence 455667777332222221 2236799999999875432 22 56788999999999998876542 5666665
Q ss_pred CCCCceeEEeeecCc--ceEEEEEEcCCCCEEEEEEcCCC-ceEEEEEeCCC
Q 004839 203 GSTDEDALLLEESNE--NVYVNIRHTKDFHFVCVHTFSTT-SSKVFLINAAD 251 (728)
Q Consensus 203 ~t~~~~~lv~~~~~~--~~~~~~~~SpDg~~l~~~~~~~~-~~~l~~~dl~~ 251 (728)
.+.. ..+++...+ .--..+.|.=||++|++..-.+. ..+|-++|.++
T Consensus 750 rs~e--~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 750 RSRE--QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred CCCC--CccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 4432 234443322 11234678889999988765543 35566666655
No 299
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.97 E-value=0.65 Score=48.68 Aligned_cols=147 Identities=16% Similarity=0.067 Sum_probs=77.4
Q ss_pred eceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCC
Q 004839 127 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 204 (728)
Q Consensus 127 ~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t 204 (728)
..+++++||..||-.- .+| .++|++..+........ ...+..+.|||||+.|+++..+ ...||-.+-+.
T Consensus 148 k~vaf~~~gs~latgg-~dg----~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d----~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGG-TDG----TLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD----SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeeecc-ccc----eEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC----ceEEEEeccCc
Confidence 4578899999998762 444 48999965544332222 3467889999999999998644 33566544331
Q ss_pred CCceeEEeeecCcceEEEEEEcCCC--CEEEEEEcCC--CceEEEEEeCCCCC--CCeEEeeecCCc-eEEEEeecCCEE
Q 004839 205 TDEDALLLEESNENVYVNIRHTKDF--HFVCVHTFST--TSSKVFLINAADPF--SGLTLIWECEGL-AHCIVEHHEGFL 277 (728)
Q Consensus 205 ~~~~~lv~~~~~~~~~~~~~~SpDg--~~l~~~~~~~--~~~~l~~~dl~~~~--~~~~~l~~~~~~-~~~~~~~dg~~l 277 (728)
.-.. +.-.+.+. .+....++.|+ ..|.+.+... ..-.++.+.+..+. ...+....+... ....++.||+.+
T Consensus 219 ~~a~-~t~~~k~~-~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~ 296 (398)
T KOG0771|consen 219 ALAR-KTPFSKDE-MFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFL 296 (398)
T ss_pred hhhh-cCCcccch-hhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEE
Confidence 1011 11012222 23345566655 2333333322 22223333332211 122222233323 345778888888
Q ss_pred EEEEcCC
Q 004839 278 YLFTDAA 284 (728)
Q Consensus 278 ~~~tn~~ 284 (728)
.+-++.+
T Consensus 297 AlGT~dG 303 (398)
T KOG0771|consen 297 ALGTMDG 303 (398)
T ss_pred EEeccCC
Confidence 8877743
No 300
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=94.94 E-value=0.39 Score=52.47 Aligned_cols=199 Identities=11% Similarity=0.140 Sum_probs=105.3
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCE-EEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQA-LIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~-l~y~~~~~~~~~~~v~~~~l 202 (728)
.+..++..|.|.+||=.++ .| +++|+.++||..+.... .+.+..++|.|.++. |+.++.... +++.+-
T Consensus 402 ~Vr~iSvdp~G~wlasGsd-DG----tvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-----~~ivnp 471 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSD-DG----TVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-----VLIVNP 471 (733)
T ss_pred eEEEEEecCCcceeeecCC-CC----cEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-----eEEeCc
Confidence 5677889999999987753 44 39999999998776544 557889999999863 333332211 222211
Q ss_pred CCC------CceeEE---------------eeec--------------CcceEEEEEEcCCCCEEEEEEcCCCceEEEEE
Q 004839 203 GST------DEDALL---------------LEES--------------NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLI 247 (728)
Q Consensus 203 ~t~------~~~~lv---------------~~~~--------------~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~ 247 (728)
.-+ ..+.++ .... ...-.-.+.|..+|.||+..........|++.
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 000 000000 0000 00011257899999999988888777888898
Q ss_pred eCCCCCCCeEEeeecCCceEEEEeecCCEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEee
Q 004839 248 NAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC 327 (728)
Q Consensus 248 dl~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~ 327 (728)
+|..... ..++....+-+....-|.-...+|++... +.+||-+.-. .-.+.+++. -..|..+++.
T Consensus 552 QLSK~~s-Q~PF~kskG~vq~v~FHPs~p~lfVaTq~-------~vRiYdL~kq-----elvKkL~tg--~kwiS~msih 616 (733)
T KOG0650|consen 552 QLSKRKS-QSPFRKSKGLVQRVKFHPSKPYLFVATQR-------SVRIYDLSKQ-----ELVKKLLTG--SKWISSMSIH 616 (733)
T ss_pred ecccccc-cCchhhcCCceeEEEecCCCceEEEEecc-------ceEEEehhHH-----HHHHHHhcC--Ceeeeeeeec
Confidence 8876321 12222222223322233333334444432 2344433211 111222222 1335555555
Q ss_pred --CCEEEEEEecCCeeEEEEEecCCC
Q 004839 328 --KTHMALILREGRTYRLCSVSLPLP 351 (728)
Q Consensus 328 --~~~lv~~~~~~g~~~l~~~~l~~~ 351 (728)
++.|++....+ ++.-+|++..
T Consensus 617 p~GDnli~gs~d~---k~~WfDldls 639 (733)
T KOG0650|consen 617 PNGDNLILGSYDK---KMCWFDLDLS 639 (733)
T ss_pred CCCCeEEEecCCC---eeEEEEcccC
Confidence 46777665433 5666777643
No 301
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=94.88 E-value=0.97 Score=49.18 Aligned_cols=145 Identities=9% Similarity=0.036 Sum_probs=89.3
Q ss_pred ceeeCCCCCEEEEEEEcC----CC---cEEEEEEEECCCCc-eeccCccceeeeEEEecCCCEEEEEEecCCCCcceeEE
Q 004839 128 LSEVSPDHKFLAYTMYDK----DN---DYFTLSVRNLNSGA-LCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 199 (728)
Q Consensus 128 ~~~~SPDG~~lA~~~~~~----g~---e~~~l~v~dl~tg~-~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~ 199 (728)
.+.|.+-|.-|.....++ |. ....||+++.++.. .+++...+-+.++.|+|+|+.+..+- +-.+..+-+
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~Vvy---GfMPAkvti 298 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVY---GFMPAKVTI 298 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEE---ecccceEEE
Confidence 567888898777654322 11 23579999998332 23343466789999999999776652 134567777
Q ss_pred EECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeec--CCceEEEEeecCCEE
Q 004839 200 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC--EGLAHCIVEHHEGFL 277 (728)
Q Consensus 200 ~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~--~~~~~~~~~~dg~~l 277 (728)
+|+... ++++-+.... -.+.|+|.|++|++..-..-..++=+.|..+ .+.|... .+...+.|++||.+|
T Consensus 299 fnlr~~----~v~df~egpR-N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n----~K~i~~~~a~~tt~~eW~PdGe~f 369 (566)
T KOG2315|consen 299 FNLRGK----PVFDFPEGPR-NTAFFNPHGNIILLAGFGNLPGDMEVWDVPN----RKLIAKFKAANTTVFEWSPDGEYF 369 (566)
T ss_pred EcCCCC----EeEeCCCCCc-cceEECCCCCEEEEeecCCCCCceEEEeccc----hhhccccccCCceEEEEcCCCcEE
Confidence 777542 3443332221 2356899999999887544334455556655 2233322 233456788999988
Q ss_pred EEEEcCC
Q 004839 278 YLFTDAA 284 (728)
Q Consensus 278 ~~~tn~~ 284 (728)
+-.+...
T Consensus 370 lTATTaP 376 (566)
T KOG2315|consen 370 LTATTAP 376 (566)
T ss_pred EEEeccc
Confidence 8777654
No 302
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.82 E-value=6.9 Score=48.35 Aligned_cols=113 Identities=10% Similarity=0.092 Sum_probs=67.8
Q ss_pred eceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc------------------cceeeeEEEecCCCEEEEEEe
Q 004839 127 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ------------------AVRVSNIAWAKDGQALIYVVT 188 (728)
Q Consensus 127 ~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~------------------~~~~~~~~WspDg~~l~y~~~ 188 (728)
.++.++++|..| |..|..+ ..|+++|+.++....+.. ......++++|++..||.+..
T Consensus 627 ~GIavd~~gn~L-YVaDt~n---~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 627 QGLAYNAKKNLL-YVADTEN---HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred cEEEEeCCCCEE-EEEeCCC---ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 456788888866 4446544 358888888776433210 012245789997777776532
Q ss_pred cCCCCcceeEEEECCCCCceeEEeeec------C------cc--eEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 189 DQNKRPYQIYCSIIGSTDEDALLLEES------N------EN--VYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 189 ~~~~~~~~v~~~~l~t~~~~~lv~~~~------~------~~--~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
...+|+.++..++... ++... + .. .-.++.++|||++|++.... .+.|+++|+++
T Consensus 703 ----~~~~I~v~d~~~g~v~--~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~--n~~Irv~D~~t 771 (1057)
T PLN02919 703 ----GQHQIWEYNISDGVTR--VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE--SSSIRALDLKT 771 (1057)
T ss_pred ----CCCeEEEEECCCCeEE--EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--CCeEEEEECCC
Confidence 2347888887654311 11100 0 00 11357899999998876543 35799999876
No 303
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.81 E-value=0.34 Score=49.72 Aligned_cols=101 Identities=12% Similarity=-0.005 Sum_probs=63.7
Q ss_pred eeeCC-CCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cc--eeeeEEEecCCCEEEEEEecCCCCcceeEEEECC
Q 004839 129 SEVSP-DHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AV--RVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 203 (728)
Q Consensus 129 ~~~SP-DG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~--~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~ 203 (728)
+..+| ++.-+||. .+.|. .+.++|..+|+...... .+ -++.-.||+||++||-+.++-......|-++|..
T Consensus 10 ~a~~p~~~~avafa-RRPG~---~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 10 VAAHPTRPEAVAFA-RRPGT---FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred eeeCCCCCeEEEEE-eCCCc---EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 45789 56666666 46674 37899999998765432 23 3467899999998877766544444567777876
Q ss_pred CCCceeEEee--ecCcceEEEEEEcCCCCEEEEEE
Q 004839 204 STDEDALLLE--ESNENVYVNIRHTKDFHFVCVHT 236 (728)
Q Consensus 204 t~~~~~lv~~--~~~~~~~~~~~~SpDg~~l~~~~ 236 (728)
.+-...--|. .-++ ..+.+.|||+.|++..
T Consensus 86 ~~~~ri~E~~s~GIGP---Hel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGP---HELLLMPDGETLVVAN 117 (305)
T ss_pred CCcEEEeEecCCCcCh---hhEEEcCCCCEEEEEc
Confidence 3211111111 1111 2367899999987754
No 304
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=94.74 E-value=0.15 Score=57.66 Aligned_cols=81 Identities=17% Similarity=0.283 Sum_probs=60.2
Q ss_pred cEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCC-ceeEEeeecCcceEEEEE
Q 004839 148 DYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD-EDALLLEESNENVYVNIR 224 (728)
Q Consensus 148 e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~-~~~lv~~~~~~~~~~~~~ 224 (728)
+.+.|.|+|..|-+..+... .+.+..+.||||||||+-...|. .|...|+.++. .|.+..+.+ ..+++
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~-----tIr~wDlpt~~lID~~~vd~~----~~sls 624 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS-----TIRTWDLPTGTLIDGLLVDSP----CTSLS 624 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC-----cEEEEeccCcceeeeEecCCc----ceeeE
Confidence 45789999998877665432 45788999999999998876553 58888998886 565554322 24678
Q ss_pred EcCCCCEEEEEEc
Q 004839 225 HTKDFHFVCVHTF 237 (728)
Q Consensus 225 ~SpDg~~l~~~~~ 237 (728)
+||.|.+|+....
T Consensus 625 ~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 625 FSPNGDFLATVHV 637 (910)
T ss_pred ECCCCCEEEEEEe
Confidence 9999999875543
No 305
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=94.70 E-value=2.3 Score=43.15 Aligned_cols=114 Identities=10% Similarity=0.052 Sum_probs=64.2
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 203 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~ 203 (728)
.+..+.||+||++|.-++ ++. .|.++|+..|..+.... ...+-...|.|-.+..+....-+. .-+..+++
T Consensus 67 pi~sl~WS~dgr~LltsS-~D~----si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~----sp~vi~~s 137 (405)
T KOG1273|consen 67 PITSLCWSRDGRKLLTSS-RDW----SIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEE----SPVVIDFS 137 (405)
T ss_pred ceeEEEecCCCCEeeeec-CCc----eeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecC----CcEEEEec
Confidence 678899999999997654 433 48999999998554332 334456678776554443332111 23455555
Q ss_pred CCCceeEEeeecCcceEEEE---EEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 204 STDEDALLLEESNENVYVNI---RHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 204 t~~~~~lv~~~~~~~~~~~~---~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
.+....+.. .++....... .+.+-|+||+.-.. + ..+.++|.++
T Consensus 138 ~~~h~~Lp~-d~d~dln~sas~~~fdr~g~yIitGts-K--Gkllv~~a~t 184 (405)
T KOG1273|consen 138 DPKHSVLPK-DDDGDLNSSASHGVFDRRGKYIITGTS-K--GKLLVYDAET 184 (405)
T ss_pred CCceeeccC-CCccccccccccccccCCCCEEEEecC-c--ceEEEEecch
Confidence 443322222 2221111112 36788999864333 2 3566777765
No 306
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.66 E-value=0.18 Score=51.79 Aligned_cols=116 Identities=8% Similarity=0.146 Sum_probs=74.9
Q ss_pred eEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEE
Q 004839 123 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 201 (728)
Q Consensus 123 ~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~ 201 (728)
+-.+..++++|-...|.-+...++ .|+++|+.++.++.... .-....++|+| ..+.|+..+ +.+.+|.+|
T Consensus 187 ~Dti~svkfNpvETsILas~~sDr----sIvLyD~R~~~Pl~KVi~~mRTN~IswnP--eafnF~~a~---ED~nlY~~D 257 (433)
T KOG0268|consen 187 ADSISSVKFNPVETSILASCASDR----SIVLYDLRQASPLKKVILTMRTNTICWNP--EAFNFVAAN---EDHNLYTYD 257 (433)
T ss_pred CCceeEEecCCCcchheeeeccCC----ceEEEecccCCccceeeeeccccceecCc--cccceeecc---ccccceehh
Confidence 335677788898887766543333 39999999998776543 44667899999 456666543 456899999
Q ss_pred CCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 202 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 202 l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
+..-....-++.+. ..-.+++.+||-|+-++-.+.++ .|.+.....
T Consensus 258 mR~l~~p~~v~~dh-vsAV~dVdfsptG~EfvsgsyDk---sIRIf~~~~ 303 (433)
T KOG0268|consen 258 MRNLSRPLNVHKDH-VSAVMDVDFSPTGQEFVSGSYDK---SIRIFPVNH 303 (433)
T ss_pred hhhhcccchhhccc-ceeEEEeccCCCcchhccccccc---eEEEeecCC
Confidence 75433333344332 22346789999999876444433 355555544
No 307
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=94.55 E-value=0.31 Score=49.37 Aligned_cols=104 Identities=15% Similarity=0.168 Sum_probs=68.1
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
.+..+.|+-|.-++......++. +.|+++..-+..-... ..+.+...||||||.|+-++.- ..+|-...+
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~----vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF----~lriTVWSL 121 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPK----VQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEF----DLRITVWSL 121 (447)
T ss_pred Hhhheeeeccceeeeeeeeccce----EEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecc----eeEEEEEEe
Confidence 45567799999999988776654 8899998776543322 3467889999999999887532 224444445
Q ss_pred CCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCC
Q 004839 203 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFST 239 (728)
Q Consensus 203 ~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~ 239 (728)
.+.+--.+.+.... .-++++.|||++.++.+.++
T Consensus 122 ~t~~~~~~~~pK~~---~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 122 NTQKGYLLPHPKTN---VKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred ccceeEEecccccC---ceeEEECCCCceeeeeeccc
Confidence 44321111111111 13578999999999888764
No 308
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=5.1 Score=44.18 Aligned_cols=247 Identities=11% Similarity=0.037 Sum_probs=126.8
Q ss_pred EEeecccccccCCceEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEE
Q 004839 109 KLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYV 186 (728)
Q Consensus 109 ~lld~n~~~~~~~~~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~ 186 (728)
-+||...+.. + |.+.-+.|| ....||.+.. ..+|+++..+|+...+.. .+.+..+.|+++|+.|+..
T Consensus 167 rvLDaP~l~d--D--fY~nlldWs-s~n~laValg------~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG 235 (484)
T KOG0305|consen 167 RVLDAPGLQD--D--FYLNLLDWS-SANVLAVALG------QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVG 235 (484)
T ss_pred hhccCCcccc--c--HhhhHhhcc-cCCeEEEEec------ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEe
Confidence 3466665543 2 346677899 4556777753 249999999999776654 4678899999999999887
Q ss_pred EecCCCCcceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEee-ecCCc
Q 004839 187 VTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIW-ECEGL 265 (728)
Q Consensus 187 ~~~~~~~~~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~-~~~~~ 265 (728)
..+ ..|.+.|+.+..... ...+........++|. +. ++ .+... ...|...|+..+......+. .+.+.
T Consensus 236 ~~~-----g~v~iwD~~~~k~~~-~~~~~h~~rvg~laW~--~~-~l-ssGsr-~~~I~~~dvR~~~~~~~~~~~H~qeV 304 (484)
T KOG0305|consen 236 TSD-----GTVQIWDVKEQKKTR-TLRGSHASRVGSLAWN--SS-VL-SSGSR-DGKILNHDVRISQHVVSTLQGHRQEV 304 (484)
T ss_pred ecC-----CeEEEEehhhccccc-cccCCcCceeEEEecc--Cc-eE-EEecC-CCcEEEEEEecchhhhhhhhccccee
Confidence 543 367888876654211 1122122233445565 22 22 22211 12344444433211111111 11222
Q ss_pred eEEEEeecCCEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeC--CEEEEEEecCCeeEE
Q 004839 266 AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK--THMALILREGRTYRL 343 (728)
Q Consensus 266 ~~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~--~~lv~~~~~~g~~~l 343 (728)
....+++|+..|+--.|. ..++..+.. . ......+..+ ...+..++|.. ..|+.+..-.....|
T Consensus 305 CgLkws~d~~~lASGgnD---------N~~~Iwd~~-~--~~p~~~~~~H--~aAVKA~awcP~q~~lLAsGGGs~D~~i 370 (484)
T KOG0305|consen 305 CGLKWSPDGNQLASGGND---------NVVFIWDGL-S--PEPKFTFTEH--TAAVKALAWCPWQSGLLATGGGSADRCI 370 (484)
T ss_pred eeeEECCCCCeeccCCCc---------cceEeccCC-C--ccccEEEecc--ceeeeEeeeCCCccCceEEcCCCcccEE
Confidence 334566777766543332 234444432 1 1122223222 33455555554 556655444444567
Q ss_pred EEEecCCCCCCcceeecccccccccCCCceeeeecCCCccCCCcEEEEEEccCCCCceEEEE
Q 004839 344 CSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDY 405 (728)
Q Consensus 344 ~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~ 405 (728)
...+..++. .+ ..+..-..++++. ++...+.++.++.....--.||.|
T Consensus 371 ~fwn~~~g~-----~i-----~~vdtgsQVcsL~----Wsk~~kEi~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 371 KFWNTNTGA-----RI-----DSVDTGSQVCSLI----WSKKYKELLSTHGYSENQITLWKY 418 (484)
T ss_pred EEEEcCCCc-----Ee-----cccccCCceeeEE----EcCCCCEEEEecCCCCCcEEEEec
Confidence 777765543 11 1233333455543 455566777776666653344444
No 309
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=94.43 E-value=0.57 Score=46.30 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=72.0
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCC-------Ccee-ccC-ccceeeeEEEecCCCEEEEEEecCCCCcc
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNS-------GALC-SKP-QAVRVSNIAWAKDGQALIYVVTDQNKRPY 195 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~t-------g~~~-~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~ 195 (728)
.+-...||++|.+++++.|..-.....|.+.|+.. .++. .+. ....+....|+|-++.|++.- ...
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh-----e~G 169 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH-----EDG 169 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec-----CCC
Confidence 55667899999999999886655566788888873 3322 222 234667889999999998863 334
Q ss_pred eeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceE
Q 004839 196 QIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSK 243 (728)
Q Consensus 196 ~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 243 (728)
.|-.+|+.++.+-.-.-++. ..-..++++|+|..+++ +++.+++..
T Consensus 170 ~is~~da~~g~~~v~s~~~h-~~~Ind~q~s~d~T~Fi-T~s~Dttak 215 (327)
T KOG0643|consen 170 SISIYDARTGKELVDSDEEH-SSKINDLQFSRDRTYFI-TGSKDTTAK 215 (327)
T ss_pred cEEEEEcccCceeeechhhh-ccccccccccCCcceEE-ecccCccce
Confidence 68888887764211111111 12335688999998854 444444433
No 310
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=94.43 E-value=0.39 Score=52.78 Aligned_cols=139 Identities=15% Similarity=0.061 Sum_probs=78.0
Q ss_pred EEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHH---------------------HHHHHHHCCeEE
Q 004839 470 YDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS---------------------ELKSLLDRGWVV 528 (728)
Q Consensus 470 ~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~---------------------~~~~l~~~Gy~v 528 (728)
+.+....+..+..|++..... ....|+|+++-||||.+...+... ....|.+ =..+
T Consensus 42 ~~v~~~~~~~lfy~f~es~~~--~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~-~anl 118 (433)
T PLN03016 42 IGIGEDENVQFFYYFIKSENN--PKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTK-MANI 118 (433)
T ss_pred EEecCCCCeEEEEEEEecCCC--cccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhh-cCcE
Confidence 334333456677777665532 345799999999998653211100 0012222 2568
Q ss_pred EEEcCCCCCCCCCccccccccCCC-CCcHHHHHHHHHHH-HHcCCCCCCcEEEEEeCccHHHHHHHHHh----C-----C
Q 004839 529 AFADVRGGGGGGKKWHHDGRRTKK-LNSIKDFISCARFL-IEKEIVKEHKLAGWGYSAGGLLVAAAINC----C-----P 597 (728)
Q Consensus 529 ~~~d~RG~g~~G~~~~~~~~~~~~-~~~~~D~~~~~~~l-~~~~~~d~~ri~i~G~S~GG~~~~~~~~~----~-----p 597 (728)
+.+|.+-+.||... ........ ....+|+...++.. ...+......+.|.|.||||..+..++.. . +
T Consensus 119 lfiDqPvGtGfSy~--~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~ 196 (433)
T PLN03016 119 IFLDQPVGSGFSYS--KTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEP 196 (433)
T ss_pred EEecCCCCCCccCC--CCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCC
Confidence 88896655554321 11111111 11234665555443 33444445789999999999877666532 1 1
Q ss_pred -CceeEEEEeCCcccch
Q 004839 598 -DLFRAVVLEVPFLDAT 613 (728)
Q Consensus 598 -~~f~a~v~~~p~~d~~ 613 (728)
=-+++++...|++|..
T Consensus 197 ~inLkGi~iGNg~t~~~ 213 (433)
T PLN03016 197 PINLQGYMLGNPVTYMD 213 (433)
T ss_pred cccceeeEecCCCcCch
Confidence 1478999999987764
No 311
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=94.40 E-value=2 Score=49.51 Aligned_cols=143 Identities=10% Similarity=-0.040 Sum_probs=84.4
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
.+....+|-||+++|+..+ .+.|.++++..+....... ...+..+.+.|.+..|+.+.-+ ..|+++++
T Consensus 98 p~r~~~v~g~g~~iaagsd-----D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~d-----G~v~iw~~ 167 (933)
T KOG1274|consen 98 PIRDLAVSGSGKMIAAGSD-----DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCD-----GKVQIWDL 167 (933)
T ss_pred cceEEEEecCCcEEEeecC-----ceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecC-----ceEEEEEc
Confidence 4556779999999999754 3568999987765433322 4567889999999988776433 36888888
Q ss_pred CCCC-ceeE--Ee---eecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecC-Cc--eEEEEeec
Q 004839 203 GSTD-EDAL--LL---EESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-GL--AHCIVEHH 273 (728)
Q Consensus 203 ~t~~-~~~l--v~---~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~-~~--~~~~~~~d 273 (728)
.++. ...+ +. +..+......++|+|+|..+++...+ +.|-+++..+-... ..+.... .. ....++|.
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d---~~Vkvy~r~~we~~-f~Lr~~~~ss~~~~~~wsPn 243 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD---NTVKVYSRKGWELQ-FKLRDKLSSSKFSDLQWSPN 243 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC---CeEEEEccCCceeh-eeecccccccceEEEEEcCC
Confidence 7653 1111 11 11112344568999997666555443 24556665552211 1121111 11 12355677
Q ss_pred CCEEEEEE
Q 004839 274 EGFLYLFT 281 (728)
Q Consensus 274 g~~l~~~t 281 (728)
|.+|+..+
T Consensus 244 G~YiAAs~ 251 (933)
T KOG1274|consen 244 GKYIAAST 251 (933)
T ss_pred CcEEeeec
Confidence 77666544
No 312
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=94.31 E-value=9.6 Score=41.42 Aligned_cols=152 Identities=9% Similarity=0.056 Sum_probs=85.7
Q ss_pred ccccccCCceEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceec-----cCc--cceeeeEEEecCCCEEEEE
Q 004839 114 NQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS-----KPQ--AVRVSNIAWAKDGQALIYV 186 (728)
Q Consensus 114 n~~~~~~~~~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~-----~~~--~~~~~~~~WspDg~~l~y~ 186 (728)
+++.-.++ .-.+...++-|.|-+++- |+-.|++.++|+.+..... +.. ...+..+.||+.|..|+.+
T Consensus 159 hEi~l~hg-tk~Vsal~~Dp~GaR~~s-----Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvv 232 (641)
T KOG0772|consen 159 HEIQLKHG-TKIVSALAVDPSGARFVS-----GSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVV 232 (641)
T ss_pred ceEeccCC-ceEEEEeeecCCCceeee-----ccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEE
Confidence 33333344 668888999999988753 3445889999998754221 211 1246789999999999877
Q ss_pred EecCCCCcceeEEEECCCCC------ceeEE---eee-cCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCe
Q 004839 187 VTDQNKRPYQIYCSIIGSTD------EDALL---LEE-SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGL 256 (728)
Q Consensus 187 ~~~~~~~~~~v~~~~l~t~~------~~~lv---~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~ 256 (728)
.-.. +.-++|-+.-. -|.-| +.. ....-.....|.|+.+..++++..+++-+||-++-. +.+.
T Consensus 233 sg~a-----qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~--k~q~ 305 (641)
T KOG0772|consen 233 SGSA-----QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNT--KSQL 305 (641)
T ss_pred ecCc-----ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCc--hhhe
Confidence 4321 22222221100 00000 000 000111235799999999999888777666655433 2445
Q ss_pred EEeeecCCc------eEEEEeecCCEEE
Q 004839 257 TLIWECEGL------AHCIVEHHEGFLY 278 (728)
Q Consensus 257 ~~l~~~~~~------~~~~~~~dg~~l~ 278 (728)
+.+.++..+ ..+.+++||..++
T Consensus 306 qVik~k~~~g~Rv~~tsC~~nrdg~~iA 333 (641)
T KOG0772|consen 306 QVIKTKPAGGKRVPVTSCAWNRDGKLIA 333 (641)
T ss_pred eEEeeccCCCcccCceeeecCCCcchhh
Confidence 555544322 2345667777643
No 313
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=94.23 E-value=0.25 Score=54.96 Aligned_cols=131 Identities=18% Similarity=0.226 Sum_probs=88.2
Q ss_pred EEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccH-HHHHHHHHCCeEEEEEcCCCCCCCC----Ccccc--ccccCC
Q 004839 479 SVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR-SELKSLLDRGWVVAFADVRGGGGGG----KKWHH--DGRRTK 551 (728)
Q Consensus 479 ~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~-~~~~~l~~~Gy~v~~~d~RG~g~~G----~~~~~--~~~~~~ 551 (728)
.|...+.+|.+. ++ -.+..+-||+.......-. .....-+++||+++.-|- |+.+.. ..|.. ....++
T Consensus 16 ~i~fev~LP~~W--Ng--R~~~~GgGG~~G~i~~~~~~~~~~~~~~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~df 90 (474)
T PF07519_consen 16 NIRFEVWLPDNW--NG--RFLQVGGGGFAGGINYADGKASMATALARGYATASTDS-GHQGSAGSDDASFGNNPEALLDF 90 (474)
T ss_pred eEEEEEECChhh--cc--CeEEECCCeeeCcccccccccccchhhhcCeEEEEecC-CCCCCcccccccccCCHHHHHHH
Confidence 777778888754 23 3555556666544322110 013455678999999884 333221 22221 011234
Q ss_pred CCCcHHHHHHHHHHHHHcCC-CCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchh
Q 004839 552 KLNSIKDFISCARFLIEKEI-VKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATN 614 (728)
Q Consensus 552 ~~~~~~D~~~~~~~l~~~~~-~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~ 614 (728)
+...+.+...+.+.|++.-| ..|++-...|.|-||-.++.++-++|+.|.++|+.+|.+++..
T Consensus 91 a~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~~~ 154 (474)
T PF07519_consen 91 AYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINWTH 154 (474)
T ss_pred HhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHHHH
Confidence 45566677777888887633 4688999999999999999999999999999999999988754
No 314
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=2.8 Score=41.35 Aligned_cols=195 Identities=9% Similarity=0.056 Sum_probs=101.7
Q ss_pred ceeeCC--CCCEEEEEEEc----CCCcEEEEEEEECCCCceeccC----ccceeeeEEEecCCCEEEEEEecCCCCccee
Q 004839 128 LSEVSP--DHKFLAYTMYD----KDNDYFTLSVRNLNSGALCSKP----QAVRVSNIAWAKDGQALIYVVTDQNKRPYQI 197 (728)
Q Consensus 128 ~~~~SP--DG~~lA~~~~~----~g~e~~~l~v~dl~tg~~~~~~----~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v 197 (728)
.+++|| +++ ||..... .|+ -.|+|+|+..++-+.+. ..+....++|++...-++++...+. .|
T Consensus 13 svqfSPf~~nr-LavAt~q~yGl~G~--G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDG----SL 85 (311)
T KOG0277|consen 13 SVQFSPFVENR-LAVATAQHYGLAGN--GRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDG----SL 85 (311)
T ss_pred eeEecccccch-hheeehhhcccccC--ceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCc----eE
Confidence 356777 444 5543221 233 34999999744433322 1457788999999888888876432 45
Q ss_pred EEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCceEEE--EeecCC
Q 004839 198 YCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCI--VEHHEG 275 (728)
Q Consensus 198 ~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~--~~~dg~ 275 (728)
-+.|+..+......+.|..... .++.|.+-.++++++++=+.+-+||..+... ..+.. .......|. ++|.-.
T Consensus 86 rl~d~~~~s~Pi~~~kEH~~EV-~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~---Sv~Tf-~gh~~~Iy~a~~sp~~~ 160 (311)
T KOG0277|consen 86 RLFDLTMPSKPIHKFKEHKREV-YSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN---SVQTF-NGHNSCIYQAAFSPHIP 160 (311)
T ss_pred EEeccCCCCcchhHHHhhhhhe-EEeccccccceeEEeeccCCceEeecCCCCc---ceEee-cCCccEEEEEecCCCCC
Confidence 5556655444455566655443 4567888778887777544455666555533 22222 222333332 344333
Q ss_pred EEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEee--CCEEEEEEecCCeeEEEEEecC
Q 004839 276 FLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC--KTHMALILREGRTYRLCSVSLP 349 (728)
Q Consensus 276 ~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~--~~~lv~~~~~~g~~~l~~~~l~ 349 (728)
-++..+..++ ..+|+.+... ++...+..+ ...+-..++. +..++++...++. |+.+|+.
T Consensus 161 nlfas~Sgd~------~l~lwdvr~~-----gk~~~i~ah--~~Eil~cdw~ky~~~vl~Tg~vd~~--vr~wDir 221 (311)
T KOG0277|consen 161 NLFASASGDG------TLRLWDVRSP-----GKFMSIEAH--NSEILCCDWSKYNHNVLATGGVDNL--VRGWDIR 221 (311)
T ss_pred CeEEEccCCc------eEEEEEecCC-----CceeEEEec--cceeEeecccccCCcEEEecCCCce--EEEEehh
Confidence 3444333332 2445554322 333332222 2334444554 4566666555553 4455543
No 315
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.18 E-value=0.21 Score=50.45 Aligned_cols=85 Identities=21% Similarity=0.184 Sum_probs=57.1
Q ss_pred cEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 004839 497 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK 576 (728)
Q Consensus 497 P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 576 (728)
|.|+.+|++-|.. ..|......|... ..|+..+.+|.+... ....+++|.++..-..+.+- --...
T Consensus 1 ~pLF~fhp~~G~~--~~~~~L~~~l~~~-~~v~~l~a~g~~~~~----------~~~~~l~~~a~~yv~~Ir~~-QP~GP 66 (257)
T COG3319 1 PPLFCFHPAGGSV--LAYAPLAAALGPL-LPVYGLQAPGYGAGE----------QPFASLDDMAAAYVAAIRRV-QPEGP 66 (257)
T ss_pred CCEEEEcCCCCcH--HHHHHHHHHhccC-ceeeccccCcccccc----------cccCCHHHHHHHHHHHHHHh-CCCCC
Confidence 5678899976632 5566666777666 889999999876421 12346677665443333221 12257
Q ss_pred EEEEEeCccHHHHHHHHHh
Q 004839 577 LAGWGYSAGGLLVAAAINC 595 (728)
Q Consensus 577 i~i~G~S~GG~~~~~~~~~ 595 (728)
..+.|+|+||.++..++.+
T Consensus 67 y~L~G~S~GG~vA~evA~q 85 (257)
T COG3319 67 YVLLGWSLGGAVAFEVAAQ 85 (257)
T ss_pred EEEEeeccccHHHHHHHHH
Confidence 9999999999999988765
No 316
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.16 E-value=7.2 Score=39.36 Aligned_cols=203 Identities=12% Similarity=0.107 Sum_probs=99.5
Q ss_pred CcEEEeecccccccCCceEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc---cceeeeEEEecCCCE
Q 004839 106 IEQKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQA 182 (728)
Q Consensus 106 ~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~ 182 (728)
..++.++.-.+..-.. .+++++|.||.+.|+.+.+..+ .|+.++++ |+.++... ......+++..+++
T Consensus 7 ~y~~~i~~~~l~g~~~---e~SGLTy~pd~~tLfaV~d~~~----~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~- 77 (248)
T PF06977_consen 7 DYRVVIEAKPLPGILD---ELSGLTYNPDTGTLFAVQDEPG----EIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGR- 77 (248)
T ss_dssp T-EEEEEEEE-TT--S----EEEEEEETTTTEEEEEETTTT----EEEEEETT---EEEEEE-SS-SSEEEEEE-STTE-
T ss_pred CcEEEEeeeECCCccC---CccccEEcCCCCeEEEEECCCC----EEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCE-
Confidence 4466666444543323 5889999999998877766544 38889985 66554322 34577889987774
Q ss_pred EEEEEecCCCCcceeEEEECCCCC-----ce--eEEeeec--CcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCC
Q 004839 183 LIYVVTDQNKRPYQIYCSIIGSTD-----ED--ALLLEES--NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPF 253 (728)
Q Consensus 183 l~y~~~~~~~~~~~v~~~~l~t~~-----~~--~lv~~~~--~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~ 253 (728)
++.+ . .|..+|+.+++.... .+ .+-.... +..=+-+++|.+.++.|++... +....||.++.....
T Consensus 78 ~vl~-~---Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-~~P~~l~~~~~~~~~ 152 (248)
T PF06977_consen 78 YVLS-E---ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-RKPKRLYEVNGFPGG 152 (248)
T ss_dssp EEEE-E---TTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-SSSEEEEEEESTT-S
T ss_pred EEEE-E---cCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-CCChhhEEEccccCc
Confidence 3333 2 345588888884331 11 1111111 1122468899998888776543 344668888762211
Q ss_pred CCeEEeee--c-------CCceEEEEeecCCEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecC--------
Q 004839 254 SGLTLIWE--C-------EGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDD-------- 316 (728)
Q Consensus 254 ~~~~~l~~--~-------~~~~~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~-------- 316 (728)
........ . .+-....+.+..++||+++.... .|+.++.+ ++......-.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~--------~l~~~d~~-----G~~~~~~~L~~g~~gl~~ 219 (248)
T PF06977_consen 153 FDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESR--------LLLELDRQ-----GRVVSSLSLDRGFHGLSK 219 (248)
T ss_dssp S--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTT--------EEEEE-TT-------EEEEEE-STTGGG-SS
T ss_pred cceeeccccccccccceeccccceEEcCCCCeEEEEECCCC--------eEEEECCC-----CCEEEEEEeCCcccCccc
Confidence 11111110 0 01112234566788999988653 46666644 2211111111
Q ss_pred CCceEEEEEeeC-CEEEEEE
Q 004839 317 QGLVVEDVDFCK-THMALIL 335 (728)
Q Consensus 317 ~~~~i~~~~~~~-~~lv~~~ 335 (728)
.-...+++++.+ +.||++.
T Consensus 220 ~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 220 DIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp ---SEEEEEE-TT--EEEEE
T ss_pred ccCCccEEEECCCCCEEEEc
Confidence 112467888886 4555554
No 317
>PLN02209 serine carboxypeptidase
Probab=94.13 E-value=0.53 Score=51.77 Aligned_cols=140 Identities=16% Similarity=0.104 Sum_probs=79.0
Q ss_pred EEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHH---------------------HHHHHHHCCeEE
Q 004839 470 YDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS---------------------ELKSLLDRGWVV 528 (728)
Q Consensus 470 ~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~---------------------~~~~l~~~Gy~v 528 (728)
+.+....|..+..+++.... .....|+|+++-||||.+...+... .-..|.+ =..+
T Consensus 44 ~~v~~~~~~~lf~~f~es~~--~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~-~anl 120 (437)
T PLN02209 44 IGIGEEENVQFFYYFIKSDK--NPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTK-TANI 120 (437)
T ss_pred EEecCCCCeEEEEEEEecCC--CCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhh-cCcE
Confidence 44444446667766665543 2345799999999998653221100 0012222 2468
Q ss_pred EEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHH-cCCCCCCcEEEEEeCccHHHHHHHHHh----C-----CC
Q 004839 529 AFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIE-KEIVKEHKLAGWGYSAGGLLVAAAINC----C-----PD 598 (728)
Q Consensus 529 ~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~-~~~~d~~ri~i~G~S~GG~~~~~~~~~----~-----p~ 598 (728)
+.+|.+-+.||...-...... .-..+.+|+...++...+ .+.-....+.|+|.||||..+..++.. . +.
T Consensus 121 lfiDqPvGtGfSy~~~~~~~~-~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~ 199 (437)
T PLN02209 121 IFLDQPVGSGFSYSKTPIERT-SDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPP 199 (437)
T ss_pred EEecCCCCCCccCCCCCCCcc-CCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCc
Confidence 888877555553211111111 111234566665554443 344445689999999999876665532 1 11
Q ss_pred -ceeEEEEeCCcccch
Q 004839 599 -LFRAVVLEVPFLDAT 613 (728)
Q Consensus 599 -~f~a~v~~~p~~d~~ 613 (728)
-+++++...|++|..
T Consensus 200 inl~Gi~igng~td~~ 215 (437)
T PLN02209 200 INLQGYVLGNPITHIE 215 (437)
T ss_pred eeeeeEEecCcccChh
Confidence 468999999988753
No 318
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.11 E-value=1.2 Score=46.68 Aligned_cols=114 Identities=17% Similarity=0.117 Sum_probs=65.7
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceecc-Cc---cceeeeEEEecCC---CEEEEEEecCCCCccee
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSK-PQ---AVRVSNIAWAKDG---QALIYVVTDQNKRPYQI 197 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~-~~---~~~~~~~~WspDg---~~l~y~~~~~~~~~~~v 197 (728)
.+.++.|||||+.||+... + ...|+++.+|..++. +. ...+....|+.|+ ...+++.... ...-.+
T Consensus 188 eV~DL~FS~dgk~lasig~-d-----~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~-~~~v~~ 260 (398)
T KOG0771|consen 188 EVKDLDFSPDGKFLASIGA-D-----SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFP-GGGVRL 260 (398)
T ss_pred ccccceeCCCCcEEEEecC-C-----ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCC-CCceeE
Confidence 6888999999999999853 2 378999999964442 21 2356777888887 2222222221 111122
Q ss_pred EEEECCCCC----ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 198 YCSIIGSTD----EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 198 ~~~~l~t~~----~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
+...+-.+. ....+... .-...+.+|+||+++++.+.+. .|-++++.+
T Consensus 261 ~~~~~w~~~~~l~~~~~~~~~---~siSsl~VS~dGkf~AlGT~dG---sVai~~~~~ 312 (398)
T KOG0771|consen 261 CDISLWSGSNFLRLRKKIKRF---KSISSLAVSDDGKFLALGTMDG---SVAIYDAKS 312 (398)
T ss_pred EEeeeeccccccchhhhhhcc---CcceeEEEcCCCcEEEEeccCC---cEEEEEece
Confidence 222222221 11111111 1124578899999999888743 466666654
No 319
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=94.04 E-value=4.8 Score=40.08 Aligned_cols=119 Identities=10% Similarity=0.025 Sum_probs=75.0
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 203 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~ 203 (728)
.+-...++-|.+++.- |+....+.+||+++|+.+..-. ...+....|+.+|..++++..+.-.....|-..|+.
T Consensus 54 avW~~Did~~s~~liT-----GSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~ 128 (327)
T KOG0643|consen 54 AVWCCDIDWDSKHLIT-----GSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIR 128 (327)
T ss_pred eEEEEEecCCcceeee-----ccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEcc
Confidence 4445556667776643 3345679999999999776533 345678899999999998865544455667777765
Q ss_pred CCC-----ce-eEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCC
Q 004839 204 STD-----ED-ALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 252 (728)
Q Consensus 204 t~~-----~~-~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~ 252 (728)
... ++ .+....++. -....-|+|-+++|+.--.+ ..|-.+|+.++
T Consensus 129 ~~~~~~~s~ep~~kI~t~~s-kit~a~Wg~l~~~ii~Ghe~---G~is~~da~~g 179 (327)
T KOG0643|consen 129 DDSSDIDSEEPYLKIPTPDS-KITSALWGPLGETIIAGHED---GSISIYDARTG 179 (327)
T ss_pred CChhhhcccCceEEecCCcc-ceeeeeecccCCEEEEecCC---CcEEEEEcccC
Confidence 321 11 222222222 23456799999998643332 35777888763
No 320
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=93.96 E-value=2.8 Score=42.16 Aligned_cols=130 Identities=13% Similarity=0.184 Sum_probs=78.0
Q ss_pred EeeceeeCC-CCCEEEEEEEcCCCcEEEEEEEECCCCce----eccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeE
Q 004839 125 YEELSEVSP-DHKFLAYTMYDKDNDYFTLSVRNLNSGAL----CSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIY 198 (728)
Q Consensus 125 ~~~~~~~SP-DG~~lA~~~~~~g~e~~~l~v~dl~tg~~----~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~ 198 (728)
.+..+.|.- |-++|.-+ ..+ .+.-|+|+++|.. +++.. ...+..++|+.+|+.+|-+... ...|.
T Consensus 152 PlTSFDWne~dp~~igtS-SiD----TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvga----DGSvR 222 (364)
T KOG0290|consen 152 PLTSFDWNEVDPNLIGTS-SID----TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGA----DGSVR 222 (364)
T ss_pred cccccccccCCcceeEee-ccc----CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecC----CCcEE
Confidence 455666654 34444433 332 3578899999832 22222 3357899999999988776533 23577
Q ss_pred EEECCCCCceeEEeeecCcc-eEEEEEEcCCC-CEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCc
Q 004839 199 CSIIGSTDEDALLLEESNEN-VYVNIRHTKDF-HFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL 265 (728)
Q Consensus 199 ~~~l~t~~~~~lv~~~~~~~-~~~~~~~SpDg-~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~ 265 (728)
..||..-...+++|+.+.+. -.+.++|.+.. +|++ .-...+++|-++|+.-|......|......
T Consensus 223 mFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymA--Tf~~dS~~V~iLDiR~P~tpva~L~~H~a~ 289 (364)
T KOG0290|consen 223 MFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMA--TFAMDSNKVVILDIRVPCTPVARLRNHQAS 289 (364)
T ss_pred EEEecccccceEEecCCCCCCcceeeccCcCCchHHh--hhhcCCceEEEEEecCCCcceehhhcCccc
Confidence 78887766778899876632 23455666544 2332 122345789999998765444444443333
No 321
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=93.84 E-value=1.2 Score=45.89 Aligned_cols=114 Identities=12% Similarity=0.128 Sum_probs=64.5
Q ss_pred eeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEe-
Q 004839 170 RVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLIN- 248 (728)
Q Consensus 170 ~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d- 248 (728)
.+..+.|.+||..++-.+.+ ...|.+.|..+++...+.... -+. +..+.|||||.+|+...-+ ....||...
T Consensus 197 pVtsmqwn~dgt~l~tAS~g----sssi~iWdpdtg~~~pL~~~g-lgg-~slLkwSPdgd~lfaAt~d-avfrlw~e~q 269 (445)
T KOG2139|consen 197 PVTSMQWNEDGTILVTASFG----SSSIMIWDPDTGQKIPLIPKG-LGG-FSLLKWSPDGDVLFAATCD-AVFRLWQENQ 269 (445)
T ss_pred eeeEEEEcCCCCEEeecccC----cceEEEEcCCCCCcccccccC-CCc-eeeEEEcCCCCEEEEeccc-ceeeeehhcc
Confidence 56789999999866554433 336777788777633333111 122 2347899999998665543 334455221
Q ss_pred CCCCCCCeEEeeecCCceEEEEeecCCEEEEEEcCCccCCCCCceEEEEeeCC
Q 004839 249 AADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVD 301 (728)
Q Consensus 249 l~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~ 301 (728)
.-+ .+...+.+. .....-++++|+.|+|..... ..||.+...
T Consensus 270 ~wt--~erw~lgsg-rvqtacWspcGsfLLf~~sgs--------p~lysl~f~ 311 (445)
T KOG2139|consen 270 SWT--KERWILGSG-RVQTACWSPCGSFLLFACSGS--------PRLYSLTFD 311 (445)
T ss_pred cce--ecceeccCC-ceeeeeecCCCCEEEEEEcCC--------ceEEEEeec
Confidence 112 222233222 112234678999888876643 357776554
No 322
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=93.53 E-value=11 Score=43.92 Aligned_cols=207 Identities=13% Similarity=0.054 Sum_probs=107.1
Q ss_pred EeeceeeCCCCCEEEEEE----------------------EcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCC
Q 004839 125 YEELSEVSPDHKFLAYTM----------------------YDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQ 181 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~----------------------~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~ 181 (728)
.+...+|||+|+.+++.. +..|.+..+++++|.++ ....... ...+..+.|.+|++
T Consensus 102 ~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~ 180 (620)
T COG1506 102 GVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES-KLIKLGLGNLDVVSFATDGDGR 180 (620)
T ss_pred ccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCc-ccccccCCCCceeeeeeCCCCc
Confidence 566778888888888821 11122567788888876 2222222 33566777777788
Q ss_pred EEEEEEecCC-CCc-ceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCC-----ceEEEEEeCCCCCC
Q 004839 182 ALIYVVTDQN-KRP-YQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT-----SSKVFLINAADPFS 254 (728)
Q Consensus 182 ~l~y~~~~~~-~~~-~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-----~~~l~~~dl~~~~~ 254 (728)
.++....... ... ...+.....++... .. .+.......+.+.+||+.+.+...... ...+++++.+. +
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 255 (620)
T COG1506 181 LVASIRLDDDADPWVTNLYVLIEGNGELE--SL-TPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGEL--G 255 (620)
T ss_pred eeEEeeeccccCCceEeeEEEecCCCceE--EE-cCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccc--c
Confidence 7777765543 111 12222222222221 11 122223456788999998877766443 24566666333 1
Q ss_pred CeEEeeecCC----ceEEEEeecCCEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCCE
Q 004839 255 GLTLIWECEG----LAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTH 330 (728)
Q Consensus 255 ~~~~l~~~~~----~~~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~~ 330 (728)
.........+ .......-+++.+++++..... ...++..... ..-..+. ..+...+..++..++.
T Consensus 256 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~l~~~~~~-----~~~~~~~-~~~~~~v~~f~~~~~~ 324 (620)
T COG1506 256 EVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATDGGG-----SSPLFRVDDL-----GGGVEGL-SGDDGGVPGFDVDGRK 324 (620)
T ss_pred ccceeeccCCcccCcHHhccccCCCcEEEEEecCCC-----ceEEEEEecc-----CCceeee-cCCCceEEEEeeCCCE
Confidence 1111111111 0000111345666766665322 3556655432 1112222 2233567777777778
Q ss_pred EEEEEecCC-eeEEEEEec
Q 004839 331 MALILREGR-TYRLCSVSL 348 (728)
Q Consensus 331 lv~~~~~~g-~~~l~~~~l 348 (728)
+++...... .+++++++.
T Consensus 325 ~~~~~s~~~~p~~i~~~~~ 343 (620)
T COG1506 325 LALAYSSPTEPPEIYLYDR 343 (620)
T ss_pred EEEEecCCCCccceEEEcC
Confidence 887776655 357777764
No 323
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=93.52 E-value=1.5 Score=47.23 Aligned_cols=146 Identities=8% Similarity=0.045 Sum_probs=85.8
Q ss_pred eEEee--ceeeCCCCCEEEEEEEcCC---Cc---EEEEEEEECCCCceecc-CccceeeeEEEecCCCEEEEEEecCCCC
Q 004839 123 YAYEE--LSEVSPDHKFLAYTMYDKD---ND---YFTLSVRNLNSGALCSK-PQAVRVSNIAWAKDGQALIYVVTDQNKR 193 (728)
Q Consensus 123 ~~~~~--~~~~SPDG~~lA~~~~~~g---~e---~~~l~v~dl~tg~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~ 193 (728)
++.++ .+.|-+.|++|.+...+.- .. ..+||++++......-. ...+.+..+.|.|+++.+....- -.
T Consensus 220 lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g---~~ 296 (561)
T COG5354 220 LFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISG---YM 296 (561)
T ss_pred eEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEec---cc
Confidence 44454 4679999999999765432 11 25799999974332222 22567889999999999887741 22
Q ss_pred cceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeee--cCCceEEEEe
Q 004839 194 PYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWE--CEGLAHCIVE 271 (728)
Q Consensus 194 ~~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~--~~~~~~~~~~ 271 (728)
+..+-.+++... +.+-.+...- -.+.+||.++||++..-......+-++|..+ ..+.+.. ...-....++
T Consensus 297 pa~~s~~~lr~N----l~~~~Pe~~r-NT~~fsp~~r~il~agF~nl~gni~i~~~~~---rf~~~~~~~~~n~s~~~ws 368 (561)
T COG5354 297 PASVSVFDLRGN----LRFYFPEQKR-NTIFFSPHERYILFAGFDNLQGNIEIFDPAG---RFKVAGAFNGLNTSYCDWS 368 (561)
T ss_pred ccceeecccccc----eEEecCCccc-ccccccCcccEEEEecCCccccceEEeccCC---ceEEEEEeecCCceEeecc
Confidence 445666676543 2221111100 1135799999999876655555555666654 4444422 1122334567
Q ss_pred ecCCEEEE
Q 004839 272 HHEGFLYL 279 (728)
Q Consensus 272 ~dg~~l~~ 279 (728)
+|+..++.
T Consensus 369 pd~qF~~~ 376 (561)
T COG5354 369 PDGQFYDT 376 (561)
T ss_pred CCceEEEe
Confidence 77664443
No 324
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.48 E-value=0.44 Score=49.60 Aligned_cols=110 Identities=20% Similarity=0.226 Sum_probs=66.6
Q ss_pred cEEEEEcCCCCCCcCcccHHHHHHHHHCCe--EEEEEcCCCCCC-CCCccccccccCCCCCcHHHHHHHHHHHHHcCCCC
Q 004839 497 PGLLHGHGAYGELLDKRWRSELKSLLDRGW--VVAFADVRGGGG-GGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK 573 (728)
Q Consensus 497 P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy--~v~~~d~RG~g~-~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 573 (728)
-++|++|| |.......-...+|...+.|+ +.+.+-.+-.|. .|- ...++--..+..++...+++|.+.+-+
T Consensus 117 ~vlvFvHG-fNntf~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Y----n~DreS~~~Sr~aLe~~lr~La~~~~~- 190 (377)
T COG4782 117 TVLVFVHG-FNNTFEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGY----NYDRESTNYSRPALERLLRYLATDKPV- 190 (377)
T ss_pred eEEEEEcc-cCCchhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeec----ccchhhhhhhHHHHHHHHHHHHhCCCC-
Confidence 58899997 343333332333444444443 334444443331 110 111112224667888899999877653
Q ss_pred CCcEEEEEeCccHHHHHHHHHh---C-----CCceeEEEEeCCcccch
Q 004839 574 EHKLAGWGYSAGGLLVAAAINC---C-----PDLFRAVVLEVPFLDAT 613 (728)
Q Consensus 574 ~~ri~i~G~S~GG~~~~~~~~~---~-----p~~f~a~v~~~p~~d~~ 613 (728)
.+|-|+.||||.++++.++-+ . +..|+-+|+.+|=.|.-
T Consensus 191 -~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~D 237 (377)
T COG4782 191 -KRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDVD 237 (377)
T ss_pred -ceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCChh
Confidence 799999999999999887643 1 33578888888876653
No 325
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=93.31 E-value=0.11 Score=51.43 Aligned_cols=48 Identities=25% Similarity=0.133 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCC----CceeEEEEeC
Q 004839 560 ISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCP----DLFRAVVLEV 607 (728)
Q Consensus 560 ~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p----~~f~a~v~~~ 607 (728)
..|++++.+.---.+++|.+.|||-||.+|..++...+ +++..+.+..
T Consensus 69 ~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fD 120 (224)
T PF11187_consen 69 KSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFD 120 (224)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEee
Confidence 45666665432223456999999999999999987633 3566666443
No 326
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=93.29 E-value=2.3 Score=45.96 Aligned_cols=145 Identities=16% Similarity=0.106 Sum_probs=80.6
Q ss_pred eEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCce-eccC--c-----cceeeeEEEecCCCEEEEEEecCCCCc
Q 004839 123 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL-CSKP--Q-----AVRVSNIAWAKDGQALIYVVTDQNKRP 194 (728)
Q Consensus 123 ~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~-~~~~--~-----~~~~~~~~WspDg~~l~y~~~~~~~~~ 194 (728)
.+.+..-.|.|+.+-...+...+|. |++||+..-+. +++. . ......-+|++||+.|+-...+. .
T Consensus 268 ia~lt~g~whP~~k~~FlT~s~Dgt----lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG---S 340 (641)
T KOG0772|consen 268 IAELTCGCWHPDNKEEFLTCSYDGT----LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG---S 340 (641)
T ss_pred eeeeeccccccCcccceEEecCCCc----EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC---c
Confidence 4577788899999988777666664 88999876432 2211 1 11346678999999887665432 2
Q ss_pred ceeEEEECCCCC--ceeEEeeecCc-ceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCC---eEEeeecCCceEE
Q 004839 195 YQIYCSIIGSTD--EDALLLEESNE-NVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSG---LTLIWECEGLAHC 268 (728)
Q Consensus 195 ~~v~~~~l~t~~--~~~lv~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~---~~~l~~~~~~~~~ 268 (728)
-++|- .++-. ....+-....+ .-...+.||.||++|+-... ...+-+.||...+.. ..-|.........
T Consensus 341 IQ~W~--~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~---D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc 415 (641)
T KOG0772|consen 341 IQIWD--KGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF---DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDC 415 (641)
T ss_pred eeeee--cCCcccccceEeeeccCCCCceeEEEeccccchhhhccC---CCceeeeeccccccchhhhcCCCccCCCCcc
Confidence 34443 22211 11222221221 12456899999999864433 334666777653211 1122223333344
Q ss_pred EEeecCCEEEE
Q 004839 269 IVEHHEGFLYL 279 (728)
Q Consensus 269 ~~~~dg~~l~~ 279 (728)
-++|+.+.++-
T Consensus 416 ~FSPd~kli~T 426 (641)
T KOG0772|consen 416 CFSPDDKLILT 426 (641)
T ss_pred ccCCCceEEEe
Confidence 56676654443
No 327
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=93.27 E-value=4.3 Score=42.07 Aligned_cols=142 Identities=9% Similarity=0.031 Sum_probs=86.3
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceec-cCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS-KPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~-~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
.+-.++.+|+.+++|-. +| ..--||+++.+|+..- ++. ++.+....||.||..|+-. ....+|.++..
T Consensus 66 svFavsl~P~~~l~aTG---Gg--DD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATG-----dmsG~v~v~~~ 135 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATG---GG--DDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATG-----DMSGKVLVFKV 135 (399)
T ss_pred ceEEEEeCCCCceEEec---CC--CceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEec-----CCCccEEEEEc
Confidence 55667789976655422 22 3346899999998433 333 6688999999999755432 33457888888
Q ss_pred CCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCce-EEEEeecCCEEEEEE
Q 004839 203 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEGFLYLFT 281 (728)
Q Consensus 203 ~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~-~~~~~~dg~~l~~~t 281 (728)
.++.....+..+.++. .-+.|.|-+..|+.-+.+ ..+|+..+... +..+.+....... ...+.|||++++-..
T Consensus 136 stg~~~~~~~~e~~di--eWl~WHp~a~illAG~~D---GsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDI--EWLKWHPRAHILLAGSTD---GSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRILTGY 209 (399)
T ss_pred ccCceEEEeecccCce--EEEEecccccEEEeecCC---CcEEEEECCCc-ceeeEecCCCCCcccccccCCCceEEEEe
Confidence 8876444444333332 336899977766554443 35788877652 2333433322222 224567888776655
Q ss_pred c
Q 004839 282 D 282 (728)
Q Consensus 282 n 282 (728)
.
T Consensus 210 ~ 210 (399)
T KOG0296|consen 210 D 210 (399)
T ss_pred c
Confidence 4
No 328
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=93.26 E-value=0.9 Score=48.77 Aligned_cols=96 Identities=14% Similarity=0.187 Sum_probs=63.1
Q ss_pred ceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCC
Q 004839 128 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD 206 (728)
Q Consensus 128 ~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~ 206 (728)
...+-|.| .||... ..| .++|+|.++...+.+.. ....+.+.++|||..|+..+.| ..||++.+..+.
T Consensus 412 ~~~fhpsg-~va~Gt-~~G----~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d-----~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 412 CADFHPSG-VVAVGT-ATG----RWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHD-----NHIYIYRVSANG 480 (626)
T ss_pred EeeccCcc-eEEEee-ccc----eEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCC-----CeEEEEEECCCC
Confidence 34577888 677764 344 38899999866554432 3356788999999988887533 367887776554
Q ss_pred ceeEEeeecCcceEEEEEEcCCCCEEEE
Q 004839 207 EDALLLEESNENVYVNIRHTKDFHFVCV 234 (728)
Q Consensus 207 ~~~lv~~~~~~~~~~~~~~SpDg~~l~~ 234 (728)
........-...+...+.||+|++||.-
T Consensus 481 ~~y~r~~k~~gs~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 481 RKYSRVGKCSGSPITHLDWSSDSQFLVS 508 (626)
T ss_pred cEEEEeeeecCceeEEeeecCCCceEEe
Confidence 2222222222256678899999998753
No 329
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=93.22 E-value=0.21 Score=49.60 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=18.2
Q ss_pred CCcEEEEEeCccHHHHHHHHH
Q 004839 574 EHKLAGWGYSAGGLLVAAAIN 594 (728)
Q Consensus 574 ~~ri~i~G~S~GG~~~~~~~~ 594 (728)
..+|.++|||+||.++-.++.
T Consensus 77 ~~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALG 97 (217)
T ss_pred cccceEEEecccHHHHHHHHH
Confidence 368999999999999987765
No 330
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=93.16 E-value=1.4 Score=47.97 Aligned_cols=103 Identities=10% Similarity=-0.023 Sum_probs=64.3
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCccceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 204 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t 204 (728)
.+-++.|||+|+-.|... |---..+-|.|+... .+-...++....+.|+|.|+.|++.-.. +.+.++-..|+.+
T Consensus 272 PVhdv~W~~s~~EF~Vvy---GfMPAkvtifnlr~~-~v~df~egpRN~~~fnp~g~ii~lAGFG--NL~G~mEvwDv~n 345 (566)
T KOG2315|consen 272 PVHDVTWSPSGREFAVVY---GFMPAKVTIFNLRGK-PVFDFPEGPRNTAFFNPHGNIILLAGFG--NLPGDMEVWDVPN 345 (566)
T ss_pred CceEEEECCCCCEEEEEE---ecccceEEEEcCCCC-EeEeCCCCCccceEECCCCCEEEEeecC--CCCCceEEEeccc
Confidence 456788999999888764 222234677888743 3333344455678899999999887664 3445666667655
Q ss_pred CCceeEEeeecCcceEEEEEEcCCCCEEEEEEc
Q 004839 205 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTF 237 (728)
Q Consensus 205 ~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~ 237 (728)
-+ ...-+...+. .-+.|+|||+|++..+.
T Consensus 346 ~K-~i~~~~a~~t---t~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 346 RK-LIAKFKAANT---TVFEWSPDGEYFLTATT 374 (566)
T ss_pred hh-hccccccCCc---eEEEEcCCCcEEEEEec
Confidence 32 1111122222 23689999999876543
No 331
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=93.14 E-value=0.46 Score=60.62 Aligned_cols=98 Identities=17% Similarity=0.129 Sum_probs=65.2
Q ss_pred cEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 004839 497 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK 576 (728)
Q Consensus 497 P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 576 (728)
|.++++||+.+.. ..|......| ..++.|+.++.+|.+.. .....+++++.+.+...+..-. ...+
T Consensus 1069 ~~l~~lh~~~g~~--~~~~~l~~~l-~~~~~v~~~~~~g~~~~----------~~~~~~l~~la~~~~~~i~~~~-~~~p 1134 (1296)
T PRK10252 1069 PTLFCFHPASGFA--WQFSVLSRYL-DPQWSIYGIQSPRPDGP----------MQTATSLDEVCEAHLATLLEQQ-PHGP 1134 (1296)
T ss_pred CCeEEecCCCCch--HHHHHHHHhc-CCCCcEEEEECCCCCCC----------CCCCCCHHHHHHHHHHHHHhhC-CCCC
Confidence 5688889876643 3455555555 45799999999988632 1112366666655444443211 1247
Q ss_pred EEEEEeCccHHHHHHHHHh---CCCceeEEEEeCC
Q 004839 577 LAGWGYSAGGLLVAAAINC---CPDLFRAVVLEVP 608 (728)
Q Consensus 577 i~i~G~S~GG~~~~~~~~~---~p~~f~a~v~~~p 608 (728)
..++|||+||.++..++.+ +++++..+++..+
T Consensus 1135 ~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1135 YHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred EEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 9999999999999998874 5777877776654
No 332
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=92.99 E-value=0.51 Score=49.32 Aligned_cols=102 Identities=12% Similarity=0.048 Sum_probs=69.5
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-c-----ceeeeEEEecCCCEEEEEEecCCCCcceeE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-A-----VRVSNIAWAKDGQALIYVVTDQNKRPYQIY 198 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~-----~~~~~~~WspDg~~l~y~~~~~~~~~~~v~ 198 (728)
.+..+.+|+||..|.-.+ +++ .+-|.|+.+.+...... . .......||||+++++-... ...||
T Consensus 343 ~vtSl~ls~~g~~lLsss-RDd----tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~-----dgsv~ 412 (459)
T KOG0288|consen 343 RVTSLDLSMDGLELLSSS-RDD----TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA-----DGSVY 412 (459)
T ss_pred ceeeEeeccCCeEEeeec-CCC----ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC-----CCcEE
Confidence 678889999999887653 333 48899999988665432 1 24577899999997766543 34699
Q ss_pred EEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEE
Q 004839 199 CSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHT 236 (728)
Q Consensus 199 ~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~ 236 (728)
+.++.+++-...+-......-...++|+|.|++|+-..
T Consensus 413 iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 413 IWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred EEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 99998887333332222222346789999999986433
No 333
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=92.85 E-value=0.7 Score=50.57 Aligned_cols=142 Identities=18% Similarity=0.087 Sum_probs=84.7
Q ss_pred EEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHH---------HHHH------HCCeEEEEEcCC
Q 004839 470 YDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSEL---------KSLL------DRGWVVAFADVR 534 (728)
Q Consensus 470 ~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~---------~~l~------~~Gy~v~~~d~R 534 (728)
+.+....|..+..|++..... ....|+||+.-||||-+.-.+...+. ..|. .+=..++..|.+
T Consensus 49 v~v~~~~~~~LFYwf~eS~~~--P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd~P 126 (454)
T KOG1282|consen 49 VTVNESEGRQLFYWFFESENN--PETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLDQP 126 (454)
T ss_pred EECCCCCCceEEEEEEEccCC--CCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEEEEecC
Confidence 445555788898888876632 24469999999999865322221110 0111 112357777877
Q ss_pred CCCCCCCccccccccCCCCCcHHHHHH-HHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHH----hC-----C-CceeEE
Q 004839 535 GGGGGGKKWHHDGRRTKKLNSIKDFIS-CARFLIEKEIVKEHKLAGWGYSAGGLLVAAAIN----CC-----P-DLFRAV 603 (728)
Q Consensus 535 G~g~~G~~~~~~~~~~~~~~~~~D~~~-~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~----~~-----p-~~f~a~ 603 (728)
-+.||.-.=...........+..|... ..+|+.+.+.-..+...|.|-||+|..+-+++. .. | =-+++.
T Consensus 127 vGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG~ 206 (454)
T KOG1282|consen 127 VGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKGY 206 (454)
T ss_pred CcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceEE
Confidence 555442221111111122234456554 456777777667789999999999977766553 11 2 147999
Q ss_pred EEeCCcccch
Q 004839 604 VLEVPFLDAT 613 (728)
Q Consensus 604 v~~~p~~d~~ 613 (728)
+...|++|..
T Consensus 207 ~IGNg~td~~ 216 (454)
T KOG1282|consen 207 AIGNGLTDPE 216 (454)
T ss_pred EecCcccCcc
Confidence 9999998864
No 334
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=92.79 E-value=0.75 Score=47.50 Aligned_cols=76 Identities=20% Similarity=0.151 Sum_probs=54.6
Q ss_pred CcEEEeecccccc-----cCCceEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc----cceeeeEEE
Q 004839 106 IEQKLLDYNQEAE-----RFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAW 176 (728)
Q Consensus 106 ~~~~lld~n~~~~-----~~~~~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~W 176 (728)
++-+|+|...+.. .|.+ .++.++|||||.+||=.++ .| .-|+|..+.+|+.+.... ...+.+++|
T Consensus 153 GdV~l~d~~nl~~v~~I~aH~~--~lAalafs~~G~llATASe-KG---TVIRVf~v~~G~kl~eFRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTINAHKG--PLAALAFSPDGTLLATASE-KG---TVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF 226 (391)
T ss_pred ceEEEEEcccceeeeEEEecCC--ceeEEEECCCCCEEEEecc-Cc---eEEEEEEcCCccEeeeeeCCceeeEEEEEEE
Confidence 4456677643321 1221 6888999999999998865 45 469999999998665443 336789999
Q ss_pred ecCCCEEEEEE
Q 004839 177 AKDGQALIYVV 187 (728)
Q Consensus 177 spDg~~l~y~~ 187 (728)
+||++.|.-+.
T Consensus 227 s~ds~~L~~sS 237 (391)
T KOG2110|consen 227 SPDSQFLAASS 237 (391)
T ss_pred CCCCCeEEEec
Confidence 99999776664
No 335
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=92.54 E-value=0.45 Score=54.02 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=46.7
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEec
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTD 189 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~ 189 (728)
.+.++.||||||||+-.. .++ .|+++|+.||..+.... .....++.+||+|..|+-+..+
T Consensus 578 ritd~~FS~DgrWlisas-mD~----tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 578 RITDMTFSPDGRWLISAS-MDS----TIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred ceeeeEeCCCCcEEEEee-cCC----cEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence 788999999999998874 444 49999999998665433 3345788999999988777544
No 336
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=92.51 E-value=5.5 Score=45.28 Aligned_cols=138 Identities=12% Similarity=0.117 Sum_probs=77.8
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
.+...+||||.++|.=.+ . ...+++|.+.+...+.... ..-+..+.|+|-| .||.+. ..++..++|..|-
T Consensus 453 PVyg~sFsPd~rfLlScS-E----D~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G--yYFata-s~D~tArLWs~d~ 524 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCS-E----DSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG--YYFATA-SHDQTARLWSTDH 524 (707)
T ss_pred ceeeeeecccccceeecc-C----CcceeeeecccceeEEEecCCCcceeeEEecCCc--eEEEec-CCCceeeeeeccc
Confidence 566788999999885432 2 3457888888765443322 1234567789875 555543 3344457777664
Q ss_pred CCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecC-CceE-EEEeecCCEEEE
Q 004839 203 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-GLAH-CIVEHHEGFLYL 279 (728)
Q Consensus 203 ~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~-~~~~-~~~~~dg~~l~~ 279 (728)
..+ .+..+-+-.|.. -+.+.|+..|++--+. ..-+.+.|..++ ...++..+. ..+. ..++|+|.+|.-
T Consensus 525 ~~P-lRifaghlsDV~---cv~FHPNs~Y~aTGSs---D~tVRlWDv~~G--~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 525 NKP-LRIFAGHLSDVD---CVSFHPNSNYVATGSS---DRTVRLWDVSTG--NSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred CCc-hhhhcccccccc---eEEECCcccccccCCC---CceEEEEEcCCC--cEEEEecCCCCceEEEEEcCCCceEee
Confidence 222 222222222322 2678999999864322 234666677763 334444333 3333 355788876553
No 337
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=92.50 E-value=0.28 Score=51.97 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=49.2
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEec
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTD 189 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~ 189 (728)
.+..+++||||+|||+.. .+|. |.+++..+|+..+... .+.+..++|+.+|..|.-...+
T Consensus 454 pVysvafS~~g~ylAsGs-~dg~----V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 454 PVYSVAFSPNGRYLASGS-LDGC----VHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred ceEEEEecCCCcEEEecC-CCCe----eEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecC
Confidence 678889999999999984 5664 8999999999877554 4567899999999988776554
No 338
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=92.28 E-value=7.4 Score=38.36 Aligned_cols=189 Identities=14% Similarity=0.115 Sum_probs=102.6
Q ss_pred eeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc---cceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 126 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
+....||.|.++|. ++|.|+ -|+|+|+..-+..+... ...+..+.|....+.|+-+..+ + .|.+.|.
T Consensus 103 vk~~af~~ds~~ll----tgg~ek-llrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd---~--tVRLWD~ 172 (334)
T KOG0278|consen 103 VKAVAFSQDSNYLL----TGGQEK-LLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADD---K--TVRLWDH 172 (334)
T ss_pred eeeEEecccchhhh----ccchHH-HhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccC---C--ceEEEEe
Confidence 45566777777653 234443 37888887655443322 3467778898888888665322 2 3444555
Q ss_pred CCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCC--ce-EEEEeecCCEEEE
Q 004839 203 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG--LA-HCIVEHHEGFLYL 279 (728)
Q Consensus 203 ~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~--~~-~~~~~~dg~~l~~ 279 (728)
.++..-..+.-.. ...++.+|+||++|.+.-.+ .|-..|..+ +.+|..... .+ ...+.|+ +.+|+
T Consensus 173 rTgt~v~sL~~~s---~VtSlEvs~dG~ilTia~gs----sV~Fwdaks----f~~lKs~k~P~nV~SASL~P~-k~~fV 240 (334)
T KOG0278|consen 173 RTGTEVQSLEFNS---PVTSLEVSQDGRILTIAYGS----SVKFWDAKS----FGLLKSYKMPCNVESASLHPK-KEFFV 240 (334)
T ss_pred ccCcEEEEEecCC---CCcceeeccCCCEEEEecCc----eeEEecccc----ccceeeccCccccccccccCC-CceEE
Confidence 5554222222111 12357889999998776543 356666654 223332221 11 2234444 35665
Q ss_pred EEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEee-CCEEEEEEecCCeeEEEEEec
Q 004839 280 FTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC-KTHMALILREGRTYRLCSVSL 348 (728)
Q Consensus 280 ~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~-~~~lv~~~~~~g~~~l~~~~l 348 (728)
..+. .++++++|.... .+.........+ .+-.+... ++.+|..-.++|.-+|++...
T Consensus 241 aGge--------d~~~~kfDy~Tg---eEi~~~nkgh~g-pVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 241 AGGE--------DFKVYKFDYNTG---EEIGSYNKGHFG-PVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred ecCc--------ceEEEEEeccCC---ceeeecccCCCC-ceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 4443 377888887611 111111122221 23334444 367888889999988888764
No 339
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.14 E-value=3.7 Score=40.59 Aligned_cols=117 Identities=17% Similarity=0.123 Sum_probs=60.1
Q ss_pred CcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHH-CC--eEEEEEcCCCCCCCCCccccccccC-CC
Q 004839 477 GISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLD-RG--WVVAFADVRGGGGGGKKWHHDGRRT-KK 552 (728)
Q Consensus 477 G~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~-~G--y~v~~~d~RG~g~~G~~~~~~~~~~-~~ 552 (728)
|..+....+.|--.+.....|.++++-|.||.. .-|......|.. .+ ..|...-.-|+-..-..-.++.... ..
T Consensus 10 gl~~si~~~~~~v~~~~~~~~li~~IpGNPG~~--gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~e 87 (301)
T KOG3975|consen 10 GLPTSILTLKPWVTKSGEDKPLIVWIPGNPGLL--GFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEE 87 (301)
T ss_pred CCcccceeeeeeeccCCCCceEEEEecCCCCch--hHHHHHHHHHHHhcccccceeEEeccccccCCccccccccccccc
Confidence 333333333333223345679999999988843 222223333322 22 3344443344433321112222211 12
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHh
Q 004839 553 LNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC 595 (728)
Q Consensus 553 ~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~ 595 (728)
.-+.+|.+.---..+++..-...||.++|||-|+||++.++-.
T Consensus 88 ifsL~~QV~HKlaFik~~~Pk~~ki~iiGHSiGaYm~Lqil~~ 130 (301)
T KOG3975|consen 88 IFSLQDQVDHKLAFIKEYVPKDRKIYIIGHSIGAYMVLQILPS 130 (301)
T ss_pred ccchhhHHHHHHHHHHHhCCCCCEEEEEecchhHHHHHHHhhh
Confidence 2345555543333344444455799999999999999998863
No 340
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=92.09 E-value=1.1 Score=50.25 Aligned_cols=114 Identities=9% Similarity=0.075 Sum_probs=67.0
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeE--EE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIY--CS 200 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~--~~ 200 (728)
.+..++|||||||+|-... |. ...+.|++++.-..+.... +-++...+|+|-+++|+-+-+... .--.+| +.
T Consensus 80 ~~t~vAfS~~GryvatGEc--G~-~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHD-MIVnv~dWr~ 155 (1080)
T KOG1408|consen 80 PLTCVAFSQNGRYVATGEC--GR-TPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHD-MIVNVNDWRV 155 (1080)
T ss_pred ceeEEEEcCCCcEEEeccc--CC-CccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccc-eEEEhhhhhh
Confidence 5677889999999988742 22 3568999999866444322 446778999999998764432111 001122 33
Q ss_pred ECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 201 IIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 201 ~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
++.... ..+ ..-...+++|.||.|.+-..+++ -.+|.++...
T Consensus 156 N~~~as--nki-----ss~Vsav~fsEdgSYfvT~gnrH--vk~wyl~~~~ 197 (1080)
T KOG1408|consen 156 NSSGAS--NKI-----SSVVSAVAFSEDGSYFVTSGNRH--VKLWYLQIQS 197 (1080)
T ss_pred cccccc--ccc-----ceeEEEEEEccCCceeeeeeeee--EEEEEeeccc
Confidence 332111 011 11123468999999977655543 3456666544
No 341
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=92.05 E-value=0.32 Score=52.91 Aligned_cols=88 Identities=13% Similarity=0.140 Sum_probs=53.4
Q ss_pred ccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHH
Q 004839 513 RWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAA 592 (728)
Q Consensus 513 ~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~ 592 (728)
.|...++.|.+.||..- .+.+|. +-+|+.+.. .....+..+...++.+.+.. ..+|.|+||||||.++...
T Consensus 66 ~~~~li~~L~~~GY~~~-~~l~~~---pYDWR~~~~--~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGgl~~~~f 136 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRG-KDLFAA---PYDWRLSPA--ERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGGLVARYF 136 (389)
T ss_pred hHHHHHHHHHhcCcccC-CEEEEE---eechhhchh--hHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCchHHHHH
Confidence 57788899999888631 111111 122333222 11123444555555554432 5799999999999999998
Q ss_pred HHhCCC------ceeEEEEeCCc
Q 004839 593 INCCPD------LFRAVVLEVPF 609 (728)
Q Consensus 593 ~~~~p~------~f~a~v~~~p~ 609 (728)
+...+. -+++.|+.++.
T Consensus 137 l~~~~~~~W~~~~i~~~i~i~~p 159 (389)
T PF02450_consen 137 LQWMPQEEWKDKYIKRFISIGTP 159 (389)
T ss_pred HHhccchhhHHhhhhEEEEeCCC
Confidence 887643 36777777754
No 342
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=91.99 E-value=5.8 Score=39.41 Aligned_cols=179 Identities=17% Similarity=0.101 Sum_probs=93.3
Q ss_pred CccEEEEEcCCCCCCcCcccHHHHHHHHHCC-----eEEEEEcCCCCC----CCCCccccc---cccCCCCCcHHHH---
Q 004839 495 QNPGLLHGHGAYGELLDKRWRSELKSLLDRG-----WVVAFADVRGGG----GGGKKWHHD---GRRTKKLNSIKDF--- 559 (728)
Q Consensus 495 ~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~G-----y~v~~~d~RG~g----~~G~~~~~~---~~~~~~~~~~~D~--- 559 (728)
..|+ +++||.-|.. .++..++..|+.+| -.++.+|.-|+= .+...-... .-......+..|.
T Consensus 45 ~iPT-IfIhGsgG~a--sS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~w 121 (288)
T COG4814 45 AIPT-IFIHGSGGTA--SSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKW 121 (288)
T ss_pred ccce-EEEecCCCCh--hHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHH
Confidence 3565 5778754433 34566666666655 456777777752 111110000 0001123344444
Q ss_pred -HHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhC------CCceeEEEEeCCcccchhhccCCCCCCCcccccccC
Q 004839 560 -ISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCC------PDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFG 632 (728)
Q Consensus 560 -~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~------p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g 632 (728)
..++.+|.++--+ .++=++||||||......+..+ |.+ +-.|+.++-++... ..++..++ .+.--+
T Consensus 122 lk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~l-nK~V~l~gpfN~~~--l~~de~v~--~v~~~~ 194 (288)
T COG4814 122 LKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPL-NKLVSLAGPFNVGN--LVPDETVT--DVLKDG 194 (288)
T ss_pred HHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcch-hheEEecccccccc--cCCCcchh--eeeccC
Confidence 3567778776544 5889999999999888887654 444 44444444444111 11111111 111112
Q ss_pred CC-CCHHHHHHHHccCcccccccCCCCCeEEEEcCCC------CCCCHHHHHHHHHHHHhCC
Q 004839 633 YP-GDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFN------TRFGVWEAAKWVARVREST 687 (728)
Q Consensus 633 ~p-~~~~~~~~~~~~sP~~~i~~~~~~P~lli~g~~D------~~Vp~~~~~~~~~~L~~~~ 687 (728)
.+ .....++++... +..+. ...-+|+|-|..| -+||...+.-.+.-+...+
T Consensus 195 ~~~~~t~y~~y~~~n--~k~v~--~~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ 252 (288)
T COG4814 195 PGLIKTPYYDYIAKN--YKKVS--PNTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNG 252 (288)
T ss_pred ccccCcHHHHHHHhc--ceeCC--CCcEEEEEecccccCCcCCCceechHhHHHHHHhccCc
Confidence 22 111123333221 11122 2334688888754 6899999999988888765
No 343
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=91.84 E-value=1.4 Score=44.52 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=44.4
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQ 190 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~ 190 (728)
.+...+||.|+..|.-.+ -..++++.-+++|+.+.... ...+....|++||..|.-.+.|.
T Consensus 308 Gvt~l~FSrD~SqiLS~s-----fD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 308 GVTCLSFSRDNSQILSAS-----FDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred CeeEEEEccCcchhhccc-----ccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 567788999999885432 23578999999999776543 22456678999999887765543
No 344
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=91.76 E-value=27 Score=39.42 Aligned_cols=169 Identities=10% Similarity=0.068 Sum_probs=87.3
Q ss_pred CcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeec----CCceEEEEeecCCEEEEEEcCCccCCCCC
Q 004839 216 NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC----EGLAHCIVEHHEGFLYLFTDAAKEGQEAD 291 (728)
Q Consensus 216 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~----~~~~~~~~~~dg~~l~~~tn~~~~~~~~~ 291 (728)
+..++...+.||||.+|++..-.. ..||.+..+. .-..+.+... .+.....++-|++.+++.+...
T Consensus 381 ~~~nIs~~aiSPdg~~Ia~st~~~--~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~------- 450 (691)
T KOG2048|consen 381 EKENISCAAISPDGNLIAISTVSR--TKIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNI------- 450 (691)
T ss_pred CccceeeeccCCCCCEEEEeeccc--eEEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceEEEEeccc-------
Confidence 344455567899999999887643 4567666543 1111111111 1122234456777777776322
Q ss_pred ceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEe--eCCEEEEEEecCCeeEEEEEecCCCCCCcceeecccccccccC
Q 004839 292 NHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDF--CKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPL 369 (728)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~--~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 369 (728)
+.|..++++ .++......+.+......|.-+.. .++++.+.. +...++++++.+.+.+ .....+
T Consensus 451 -~~le~~el~-~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~---t~g~I~v~nl~~~~~~---------~l~~rl 516 (691)
T KOG2048|consen 451 -FSLEEFELE-TPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS---TRGQIFVYNLETLESH---------LLKVRL 516 (691)
T ss_pred -ceeEEEEec-CcchhhhhccccccCCCcceeEEEcCCCCEEEEEe---ccceEEEEEcccceee---------cchhcc
Confidence 446666665 443333333333212223444443 356777665 4457899998765411 111122
Q ss_pred CCceeeeecCCCccCCCcEEEEEEccCCCCceEEEEECCCCeEEEE
Q 004839 370 PKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNII 415 (728)
Q Consensus 370 p~~~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~~~~~l 415 (728)
+-.+. +. +. ..++.+.+++..++ .++|.+|+...++.++
T Consensus 517 n~~vT-a~-~~-~~~~~~~lvvats~----nQv~efdi~~~~l~~w 555 (691)
T KOG2048|consen 517 NIDVT-AA-AF-SPFVRNRLVVATSN----NQVFEFDIEARNLTRW 555 (691)
T ss_pred Cccee-ee-ec-cccccCcEEEEecC----CeEEEEecchhhhhhh
Confidence 22111 11 11 12455667776655 5899999966654443
No 345
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=91.74 E-value=0.89 Score=50.05 Aligned_cols=61 Identities=26% Similarity=0.201 Sum_probs=45.7
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc----cceeeeEEEecCCCEEEEEEecC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAKDGQALIYVVTDQ 190 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg~~l~y~~~~~ 190 (728)
++-+++|||||+++|-.. .+|. |+|++..+++...... ..+...+.|.=||+.|+.+-.+.
T Consensus 722 qIf~~AWSpdGr~~AtVc-KDg~----~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 722 QIFGIAWSPDGRRIATVC-KDGT----LRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred ceeEEEECCCCcceeeee-cCce----EEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 677889999999999875 4553 9999999886332111 23456789999999998887664
No 346
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=91.68 E-value=7.2 Score=39.34 Aligned_cols=113 Identities=8% Similarity=0.022 Sum_probs=70.7
Q ss_pred EeeceeeCC-CCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEE
Q 004839 125 YEELSEVSP-DHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 201 (728)
Q Consensus 125 ~~~~~~~SP-DG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~ 201 (728)
.+..+.+|| |++..+-. +- ....+++|+..|..++... +..+..+.|-|+|..|+-.+.| .....+|
T Consensus 188 DV~slsl~p~~~ntFvSg----~c-D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD-----~tcRlyD 257 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSG----GC-DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDD-----ATCRLYD 257 (343)
T ss_pred cEEEEecCCCCCCeEEec----cc-ccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCC-----ceeEEEe
Confidence 677888999 88855432 11 2347899999997666433 4467889999999877654322 1344556
Q ss_pred CCCCCceeEEeeecCcce-EEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 202 IGSTDEDALLLEESNENV-YVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 202 l~t~~~~~lv~~~~~~~~-~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
|...+ ...+|+.....+ +.++.||..||.|+.-..+ ..+.+.|.-.
T Consensus 258 lRaD~-~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d---~~c~vWDtlk 304 (343)
T KOG0286|consen 258 LRADQ-ELAVYSHDSIICGITSVAFSKSGRLLFAGYDD---FTCNVWDTLK 304 (343)
T ss_pred ecCCc-EEeeeccCcccCCceeEEEcccccEEEeeecC---CceeEeeccc
Confidence 66543 455665333222 3578999999987654332 2344555433
No 347
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=91.48 E-value=1.7 Score=49.40 Aligned_cols=122 Identities=14% Similarity=0.088 Sum_probs=74.6
Q ss_pred EeecccccccCCceEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccC----------ccceeeeEEEecC
Q 004839 110 LLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP----------QAVRVSNIAWAKD 179 (728)
Q Consensus 110 lld~n~~~~~~~~~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~----------~~~~~~~~~WspD 179 (728)
+++++.+. + -+..+.++|||++..... ..|. +++++..+-+..... ...++.++.+.|-
T Consensus 444 Vv~W~Dl~---~---lITAvcy~PdGk~avIGt-~~G~----C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~ 512 (712)
T KOG0283|consen 444 VVDWNDLR---D---LITAVCYSPDGKGAVIGT-FNGY----CRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPG 512 (712)
T ss_pred eEeehhhh---h---hheeEEeccCCceEEEEE-eccE----EEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCC
Confidence 45666554 2 467888999999888775 5553 777777665533211 0125788888864
Q ss_pred C-CEEEEEEecCCCCcceeEEEECCCCCceeEEeee-cCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 180 G-QALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEE-SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 180 g-~~l~y~~~~~~~~~~~v~~~~l~t~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
. ..++.+++| .+|.++|+.+.+ -...|.. ....-.+..+++.||++|+..+. ++.||+.+.+.
T Consensus 513 ~~~~vLVTSnD-----SrIRI~d~~~~~-lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se---Ds~VYiW~~~~ 577 (712)
T KOG0283|consen 513 DPDEVLVTSND-----SRIRIYDGRDKD-LVHKFKGFRNTSSQISASFSSDGKHIVSASE---DSWVYIWKNDS 577 (712)
T ss_pred CCCeEEEecCC-----CceEEEeccchh-hhhhhcccccCCcceeeeEccCCCEEEEeec---CceEEEEeCCC
Confidence 3 357777654 367777864322 1111211 11112245678999999987773 45788888765
No 348
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=90.74 E-value=3.1 Score=46.34 Aligned_cols=56 Identities=23% Similarity=0.205 Sum_probs=43.2
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYV 186 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~ 186 (728)
.+.++.+-|||..|....+ + .++++|+..|..++... .+.+..++||.||+.++-.
T Consensus 14 ci~d~afkPDGsqL~lAAg---~---rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG 71 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG---S---RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASG 71 (1081)
T ss_pred chheeEECCCCceEEEecC---C---EEEEEeCCCcccccccccccceEEEEEEccCCceeccC
Confidence 5677889999999988752 2 39999999887665432 5678899999999876543
No 349
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=90.68 E-value=26 Score=37.65 Aligned_cols=56 Identities=20% Similarity=0.153 Sum_probs=40.2
Q ss_pred eeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEE
Q 004839 126 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYV 186 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~ 186 (728)
+..+.-||+|.+|+-+. ..| +||+|.+.||+.+.... -..+.-+.|+.||..|+-.
T Consensus 84 v~al~s~n~G~~l~ag~-i~g----~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGT-ISG----NLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITG 141 (476)
T ss_pred eeeeecCCCceEEEeec-ccC----cEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEec
Confidence 44556799999887652 334 49999999999776532 2356778999999866443
No 350
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=90.67 E-value=15 Score=45.49 Aligned_cols=113 Identities=12% Similarity=0.036 Sum_probs=65.4
Q ss_pred ceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc----------------cceeeeEEEecCCCEEEEEEecCC
Q 004839 128 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----------------AVRVSNIAWAKDGQALIYVVTDQN 191 (728)
Q Consensus 128 ~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~----------------~~~~~~~~WspDg~~l~y~~~~~~ 191 (728)
.+.++|++..|.++ +..+ .+|+++|+.+|....... ......++++|||+.||.+..
T Consensus 687 gVa~dp~~g~LyVa-d~~~---~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--- 759 (1057)
T PLN02919 687 DVCFEPVNEKVYIA-MAGQ---HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS--- 759 (1057)
T ss_pred EEEEecCCCeEEEE-ECCC---CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC---
Confidence 46789977666444 4333 458999988875432110 012345899999998877632
Q ss_pred CCcceeEEEECCCCCceeEEe------------eecCc-----c--eEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 192 KRPYQIYCSIIGSTDEDALLL------------EESNE-----N--VYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 192 ~~~~~v~~~~l~t~~~~~lv~------------~~~~~-----~--~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
...+|.++++.++....+.- ...+. . ...++.+++||+ |++... ....|.++|.++
T Consensus 760 -~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs--~N~rIrviD~~t 834 (1057)
T PLN02919 760 -ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADS--YNHKIKKLDPAT 834 (1057)
T ss_pred -CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEEC--CCCEEEEEECCC
Confidence 23578888887653211110 00000 0 113677889997 444432 235688888876
No 351
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=90.63 E-value=6.4 Score=39.95 Aligned_cols=110 Identities=12% Similarity=0.148 Sum_probs=63.8
Q ss_pred eceeeCCCCCEEEEEEEcCCCcEEEEEEEECCC------------Cceec-----cCc---cceeeeEEEecCCCEEEEE
Q 004839 127 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNS------------GALCS-----KPQ---AVRVSNIAWAKDGQALIYV 186 (728)
Q Consensus 127 ~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~t------------g~~~~-----~~~---~~~~~~~~WspDg~~l~y~ 186 (728)
...++||||.++|-.+ ....|.++|++- |...+ -+. .+.+..+.|.|-.. |+.+
T Consensus 116 R~aafs~DG~lvATGs-----aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~-ILiS 189 (430)
T KOG0640|consen 116 RAAAFSPDGSLVATGS-----ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET-ILIS 189 (430)
T ss_pred eeeeeCCCCcEEEccC-----CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh-eEEe
Confidence 3446999999887643 234589999862 11110 011 23567788999765 5444
Q ss_pred EecCCCCcceeEEEECCCCC--ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 187 VTDQNKRPYQIYCSIIGSTD--EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 187 ~~~~~~~~~~v~~~~l~t~~--~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
.. +...|-..|+.... ..-.++.+..+ ...+++.|.|.+|++.... .-+.++|+.+
T Consensus 190 ~s----rD~tvKlFDfsK~saKrA~K~~qd~~~--vrsiSfHPsGefllvgTdH---p~~rlYdv~T 247 (430)
T KOG0640|consen 190 GS----RDNTVKLFDFSKTSAKRAFKVFQDTEP--VRSISFHPSGEFLLVGTDH---PTLRLYDVNT 247 (430)
T ss_pred cc----CCCeEEEEecccHHHHHHHHHhhccce--eeeEeecCCCceEEEecCC---CceeEEeccc
Confidence 32 33457777775432 11223443332 3467899999999876543 2355666655
No 352
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=90.34 E-value=17 Score=37.00 Aligned_cols=114 Identities=15% Similarity=0.074 Sum_probs=69.4
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccC----c-cceeeeEEEecCCCEEEEEEecCCCCcceeEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP----Q-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 199 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~----~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~ 199 (728)
.+..+++.|.|.+|+...+. ..++++|++|-+...-. . .+.+..+..|+.|+ ||.+.+.++ .|-+
T Consensus 218 ~vrsiSfHPsGefllvgTdH-----p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG----~Ikl 287 (430)
T KOG0640|consen 218 PVRSISFHPSGEFLLVGTDH-----PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDG----AIKL 287 (430)
T ss_pred eeeeEeecCCCceEEEecCC-----CceeEEeccceeEeeecCcccccccceeEEEecCCcc-EEEEeccCC----cEEe
Confidence 56778899999999887553 45889999887643221 1 34677889999985 777765432 3444
Q ss_pred EECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 200 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 200 ~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
.|=-++.--..+-...+..-..+..|+++||||+- ++-.+-+++..+.+
T Consensus 288 wDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs---SG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 288 WDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILS---SGKDSTVKLWEIST 336 (430)
T ss_pred eccccHHHHHHHHhhcCCceeeeEEEccCCeEEee---cCCcceeeeeeecC
Confidence 44212110011112233344567889999999863 22234556666655
No 353
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=90.29 E-value=1.1 Score=47.65 Aligned_cols=99 Identities=19% Similarity=0.135 Sum_probs=60.4
Q ss_pred EEEEEcCCCCCCcCcccHHHHHHHHHCCeE---EEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCC
Q 004839 498 GLLHGHGAYGELLDKRWRSELKSLLDRGWV---VAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 574 (728)
Q Consensus 498 ~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~---v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 574 (728)
.++++||. ... ...|......+...||. +..+++.+...-+. . ....+-+.+-++....+. ..
T Consensus 61 pivlVhG~-~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~---~~~~~ql~~~V~~~l~~~--ga 126 (336)
T COG1075 61 PIVLVHGL-GGG-YGNFLPLDYRLAILGWLTNGVYAFELSGGDGTYS-------L---AVRGEQLFAYVDEVLAKT--GA 126 (336)
T ss_pred eEEEEccC-cCC-cchhhhhhhhhcchHHHhcccccccccccCCCcc-------c---cccHHHHHHHHHHHHhhc--CC
Confidence 46788986 222 23344444556667777 77777775521100 0 012222333333333322 33
Q ss_pred CcEEEEEeCccHHHHHHHHHhCC--CceeEEEEeCCcc
Q 004839 575 HKLAGWGYSAGGLLVAAAINCCP--DLFRAVVLEVPFL 610 (728)
Q Consensus 575 ~ri~i~G~S~GG~~~~~~~~~~p--~~f~a~v~~~p~~ 610 (728)
.++-+.|||+||.++..++...+ .+++.++...+.-
T Consensus 127 ~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~ 164 (336)
T COG1075 127 KKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPH 164 (336)
T ss_pred CceEEEeecccchhhHHHHhhcCccceEEEEEEeccCC
Confidence 79999999999999999888877 7888888877643
No 354
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=90.21 E-value=3.1 Score=34.49 Aligned_cols=73 Identities=10% Similarity=0.089 Sum_probs=42.5
Q ss_pred eEEEecCCCEEEEEEecCC-------------CCcceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCC
Q 004839 173 NIAWAKDGQALIYVVTDQN-------------KRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFST 239 (728)
Q Consensus 173 ~~~WspDg~~l~y~~~~~~-------------~~~~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~ 239 (728)
.++.++|+..|||+..... ....+|+++|..+++...++ +. -.|--++++|+|+++|++.....
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~-~~--L~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL-DG--LYFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE-EE--ESSEEEEEE-TTSSEEEEEEGGG
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh-hC--CCccCeEEEcCCCCEEEEEeccC
Confidence 3566777557888754321 12458999999987544443 22 23446899999999998876532
Q ss_pred CceEEEEEeCC
Q 004839 240 TSSKVFLINAA 250 (728)
Q Consensus 240 ~~~~l~~~dl~ 250 (728)
.+|..+-++
T Consensus 79 --~Ri~rywl~ 87 (89)
T PF03088_consen 79 --YRILRYWLK 87 (89)
T ss_dssp --TEEEEEESS
T ss_pred --ceEEEEEEe
Confidence 355555444
No 355
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.96 E-value=7.3 Score=39.30 Aligned_cols=108 Identities=12% Similarity=0.080 Sum_probs=63.8
Q ss_pred cceeeeEEEecCCC-EEEEEEecCCCCcceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCc--eEE
Q 004839 168 AVRVSNIAWAKDGQ-ALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTS--SKV 244 (728)
Q Consensus 168 ~~~~~~~~WspDg~-~l~y~~~~~~~~~~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~--~~l 244 (728)
..+...+.++|-.. .++|.+... .-.+..|..+.++.+++....+-.||..-.+|+||++|+-+.++-.. .-|
T Consensus 67 paR~Hgi~~~p~~~ravafARrPG----tf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGVi 142 (366)
T COG3490 67 PARGHGIAFHPALPRAVAFARRPG----TFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVI 142 (366)
T ss_pred ccccCCeecCCCCcceEEEEecCC----ceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceE
Confidence 34556778888764 566665321 24566777776655555555566677666799999999988876533 235
Q ss_pred EEEeCCCCCCCeEEeeec----CCceEEEEeecCCEEEEEEcC
Q 004839 245 FLINAADPFSGLTLIWEC----EGLAHCIVEHHEGFLYLFTDA 283 (728)
Q Consensus 245 ~~~dl~~~~~~~~~l~~~----~~~~~~~~~~dg~~l~~~tn~ 283 (728)
=++|... ..+.+-+- -...+..+.+||..+.+ .|.
T Consensus 143 GvYd~r~---~fqrvgE~~t~GiGpHev~lm~DGrtlvv-anG 181 (366)
T COG3490 143 GVYDARE---GFQRVGEFSTHGIGPHEVTLMADGRTLVV-ANG 181 (366)
T ss_pred EEEeccc---ccceecccccCCcCcceeEEecCCcEEEE-eCC
Confidence 5666643 12232211 12244456677665554 454
No 356
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=89.80 E-value=3.1 Score=43.61 Aligned_cols=105 Identities=15% Similarity=0.102 Sum_probs=64.2
Q ss_pred EEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEE------CCC-----Ccee--ccCc---cceeeeEEEecCCCEEEEEE
Q 004839 124 AYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRN------LNS-----GALC--SKPQ---AVRVSNIAWAKDGQALIYVV 187 (728)
Q Consensus 124 ~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~d------l~t-----g~~~--~~~~---~~~~~~~~WspDg~~l~y~~ 187 (728)
..+..++|||+|..||=..| +| ...||... -++ .+.. .... ...+..++|+||+..+...+
T Consensus 66 ~aVN~vRf~p~gelLASg~D-~g--~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s 142 (434)
T KOG1009|consen 66 RAVNVVRFSPDGELLASGGD-GG--EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGS 142 (434)
T ss_pred ceeEEEEEcCCcCeeeecCC-Cc--eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeee
Confidence 47889999999999987643 22 23344433 123 1100 0000 23567889999999887765
Q ss_pred ecCCCCcceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcC
Q 004839 188 TDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFS 238 (728)
Q Consensus 188 ~~~~~~~~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~ 238 (728)
.+ ..++..|+..++...... .+..+..+++|.|-++|+.-.+.+
T Consensus 143 ~d-----ns~~l~Dv~~G~l~~~~~--dh~~yvqgvawDpl~qyv~s~s~d 186 (434)
T KOG1009|consen 143 VD-----NSVRLWDVHAGQLLAILD--DHEHYVQGVAWDPLNQYVASKSSD 186 (434)
T ss_pred cc-----ceEEEEEeccceeEeecc--ccccccceeecchhhhhhhhhccC
Confidence 43 357888888876433332 223344578899999988655443
No 357
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=89.78 E-value=0.68 Score=42.07 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHh
Q 004839 556 IKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC 595 (728)
Q Consensus 556 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~ 595 (728)
.+.+...++.+.++.- +.+|.+.|||+||.++..++..
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHh
Confidence 4455566666665543 4799999999999999887753
No 358
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=89.77 E-value=4.9 Score=45.90 Aligned_cols=101 Identities=10% Similarity=-0.033 Sum_probs=64.9
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 203 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~ 203 (728)
.+-++.||-++-+|.-++|. ++++|++...+-+.... .+-+..++|.|-....|.+-.- ..+|.+..|-
T Consensus 371 DILDlSWSKn~fLLSSSMDK------TVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSL----D~KvRiWsI~ 440 (712)
T KOG0283|consen 371 DILDLSWSKNNFLLSSSMDK------TVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSL----DGKVRLWSIS 440 (712)
T ss_pred hheecccccCCeeEeccccc------cEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeeccc----ccceEEeecC
Confidence 67788999998777666552 48999999888777655 5677899999966655554322 2345555553
Q ss_pred CCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcC
Q 004839 204 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFS 238 (728)
Q Consensus 204 t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~ 238 (728)
.. .+..+.+-. .....+.++|||++.++-+-.
T Consensus 441 d~--~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~ 472 (712)
T KOG0283|consen 441 DK--KVVDWNDLR-DLITAVCYSPDGKGAVIGTFN 472 (712)
T ss_pred cC--eeEeehhhh-hhheeEEeccCCceEEEEEec
Confidence 21 121111111 233567889999998877644
No 359
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=89.73 E-value=0.79 Score=39.37 Aligned_cols=44 Identities=14% Similarity=-0.050 Sum_probs=35.8
Q ss_pred CCCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccEEEEcCCCCCCC
Q 004839 656 VLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEE 706 (728)
Q Consensus 656 ~~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~ 706 (728)
...|+|++.+..|+.+|+..++++.++|... +.|. ..+.||+..
T Consensus 33 ~~~piL~l~~~~Dp~TP~~~a~~~~~~l~~s------~lvt-~~g~gHg~~ 76 (103)
T PF08386_consen 33 GAPPILVLGGTHDPVTPYEGARAMAARLPGS------RLVT-VDGAGHGVY 76 (103)
T ss_pred CCCCEEEEecCcCCCCcHHHHHHHHHHCCCc------eEEE-EeccCccee
Confidence 3579999999999999999999999999763 2333 678899864
No 360
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=89.55 E-value=9.8 Score=39.53 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=66.0
Q ss_pred eceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecC-------------C
Q 004839 127 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQ-------------N 191 (728)
Q Consensus 127 ~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~-------------~ 191 (728)
-.++++-||..+|--.. ..+|.|+-+++++.+.+.. +-.+.-++|.|... |....+ .
T Consensus 239 r~v~v~~DGti~As~s~-----dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~---~~~i~~at~~~~~~~~l~s~ 310 (406)
T KOG0295|consen 239 RMVRVNQDGTIIASCSN-----DQTLRVWVVATKQCKAELREHEHPVECIAWAPESS---YPSISEATGSTNGGQVLGSG 310 (406)
T ss_pred EEEEecCCeeEEEecCC-----CceEEEEEeccchhhhhhhccccceEEEEeccccc---CcchhhccCCCCCccEEEee
Confidence 34677889887765421 2468888898885444322 33456778888753 221110 0
Q ss_pred CCcceeEEEECCCCCceeEEee-ecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 192 KRPYQIYCSIIGSTDEDALLLE-ESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 192 ~~~~~v~~~~l~t~~~~~lv~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
.+...|-..|+.++. .+++ ...+.+..++.++|.||||+-.+.++ .|.+.|+.+
T Consensus 311 SrDktIk~wdv~tg~---cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk---tlrvwdl~~ 365 (406)
T KOG0295|consen 311 SRDKTIKIWDVSTGM---CLFTLVGHDNWVRGVAFSPGGKYILSCADDK---TLRVWDLKN 365 (406)
T ss_pred cccceEEEEeccCCe---EEEEEecccceeeeeEEcCCCeEEEEEecCC---cEEEEEecc
Confidence 123346666777763 2222 12233556889999999997666654 366677765
No 361
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=89.52 E-value=23 Score=35.01 Aligned_cols=188 Identities=12% Similarity=0.027 Sum_probs=89.4
Q ss_pred eCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCCcee
Q 004839 131 VSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDA 209 (728)
Q Consensus 131 ~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~~ 209 (728)
..+++++|... +..+ .|+.+|.++|+.+-... ........ ..++..||+... ...|+.+|+.+++..-
T Consensus 32 ~~~~~~~v~~~-~~~~----~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~-----~~~l~~~d~~tG~~~W 100 (238)
T PF13360_consen 32 AVPDGGRVYVA-SGDG----NLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVYVGTS-----DGSLYALDAKTGKVLW 100 (238)
T ss_dssp EEEETTEEEEE-ETTS----EEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEEEEET-----TSEEEEEETTTSCEEE
T ss_pred EEEeCCEEEEE-cCCC----EEEEEECCCCCEEEEeecccccccee-eecccccccccc-----eeeeEecccCCcceee
Confidence 34566666554 3333 49999999998653222 22222212 334556766541 2279999988875321
Q ss_pred EEeeec--CcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCC-ce--------EEEEeecCCEEE
Q 004839 210 LLLEES--NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-LA--------HCIVEHHEGFLY 278 (728)
Q Consensus 210 lv~~~~--~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~-~~--------~~~~~~dg~~l~ 278 (728)
...... ............++..+++... ...|+.+|+++++.....-..... .. ...+.-.++.+|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (238)
T PF13360_consen 101 SIYLTSSPPAGVRSSSSPAVDGDRLYVGTS---SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVY 177 (238)
T ss_dssp EEEE-SSCTCSTB--SEEEEETTEEEEEET---CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEE
T ss_pred eeccccccccccccccCceEecCEEEEEec---cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEE
Confidence 111111 1111122223334777766664 346888888874211111111111 01 112222344566
Q ss_pred EEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEE-EEeeCCEEEEEEecCCeeEEEEEecCCC
Q 004839 279 LFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVED-VDFCKTHMALILREGRTYRLCSVSLPLP 351 (728)
Q Consensus 279 ~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~-~~~~~~~lv~~~~~~g~~~l~~~~l~~~ 351 (728)
+.+..+ .++.+++. .. ...|+.. . ..+.. +...++.|++.. .+ .+|+.+|+.++
T Consensus 178 ~~~~~g---------~~~~~d~~-tg-~~~w~~~-~----~~~~~~~~~~~~~l~~~~-~~--~~l~~~d~~tG 232 (238)
T PF13360_consen 178 VSSGDG---------RVVAVDLA-TG-EKLWSKP-I----SGIYSLPSVDGGTLYVTS-SD--GRLYALDLKTG 232 (238)
T ss_dssp EECCTS---------SEEEEETT-TT-EEEEEEC-S----S-ECECEECCCTEEEEEE-TT--TEEEEEETTTT
T ss_pred EEcCCC---------eEEEEECC-CC-CEEEEec-C----CCccCCceeeCCEEEEEe-CC--CEEEEEECCCC
Confidence 544332 25555665 21 1225322 1 11333 455567777776 43 46888888765
No 362
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.42 E-value=13 Score=36.46 Aligned_cols=121 Identities=16% Similarity=0.186 Sum_probs=64.0
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCc----EEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCccee--
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDND----YFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQI-- 197 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e----~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v-- 197 (728)
++..-.++||||+.+=++..-+.+ .-.||.+-+ .++...+-. .+....++|+-|.+.+||+-+ ..+.|
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs----ln~~V~a 184 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA-GHQVELIWNCVGISNGLAWDSDAKKFYYIDS----LNYEVDA 184 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEecc-CCCceeeehhccCCccccccccCcEEEEEcc----CceEEee
Confidence 455667899999966555433321 112554433 333222211 223457899999999999742 24456
Q ss_pred EEEECCCCC--ceeEEeeecCcceEE-----EEEEcCCCCEEEEEEcCCCceEEEEEeCCCCC
Q 004839 198 YCSIIGSTD--EDALLLEESNENVYV-----NIRHTKDFHFVCVHTFSTTSSKVFLINAADPF 253 (728)
Q Consensus 198 ~~~~l~t~~--~~~lv~~~~~~~~~~-----~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~ 253 (728)
|-+|..+++ .+..+|.-....-+- +.....+|+ |++...+ ...|+.+|+.+++
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~n--g~~V~~~dp~tGK 244 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFN--GGTVQKVDPTTGK 244 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEec--CcEEEEECCCCCc
Confidence 667787775 344455322211110 112222333 3343332 3468888988843
No 363
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=89.34 E-value=9.6 Score=40.03 Aligned_cols=72 Identities=15% Similarity=0.130 Sum_probs=52.3
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceecc-CccceeeeEEEecCCCEEEEEEecCCCCcceeEEEECC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSK-PQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 203 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~ 203 (728)
.++.+.|.|--.-+..+. ++ .+++.++|+.||+.+.. ...+.+.++.|+-||..|.-+..| .+|..+|..
T Consensus 133 rVg~V~wHPtA~NVLlsa--g~--Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckD-----KkvRv~dpr 203 (472)
T KOG0303|consen 133 RVGLVQWHPTAPNVLLSA--GS--DNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKD-----KKVRVIDPR 203 (472)
T ss_pred eEEEEeecccchhhHhhc--cC--CceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeeccc-----ceeEEEcCC
Confidence 677888999877776664 22 36799999999986543 336778999999999988766543 256666765
Q ss_pred CC
Q 004839 204 ST 205 (728)
Q Consensus 204 t~ 205 (728)
++
T Consensus 204 ~~ 205 (472)
T KOG0303|consen 204 RG 205 (472)
T ss_pred CC
Confidence 54
No 364
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=89.07 E-value=16 Score=39.28 Aligned_cols=71 Identities=13% Similarity=0.081 Sum_probs=51.6
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 203 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~ 203 (728)
.+..+.|+-||..||+.. .+|. +++++..++....+.. .+.+..+.|..+|.+|+-...| ..+.+.|.-
T Consensus 237 dVT~L~Wn~~G~~LatG~-~~G~----~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD-----~ttilwd~~ 306 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGS-EDGE----ARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVD-----GTTILWDAH 306 (524)
T ss_pred CcceEEecCCCCeEEEee-cCcE----EEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCC-----ccEEEEecc
Confidence 678899999999999985 5553 7888987765444433 5678899999999988655332 245566765
Q ss_pred CC
Q 004839 204 ST 205 (728)
Q Consensus 204 t~ 205 (728)
++
T Consensus 307 ~g 308 (524)
T KOG0273|consen 307 TG 308 (524)
T ss_pred Cc
Confidence 54
No 365
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=88.96 E-value=28 Score=35.29 Aligned_cols=193 Identities=12% Similarity=0.079 Sum_probs=99.0
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceec-cCccc-eeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS-KPQAV-RVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~-~~~~~-~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
.+..+.||+|+|+|.-. ..+|. |.|+|.-|..... ++.+. =+..-++||.|+.++-.-.+ ....||....
T Consensus 57 Ki~~~~ws~Dsr~ivSa-SqDGk----lIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLd---N~Csiy~ls~ 128 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSA-SQDGK----LIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLD---NKCSIYPLST 128 (343)
T ss_pred ceeeeEecCCcCeEEee-ccCCe----EEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcC---ceeEEEeccc
Confidence 56778899999999765 45664 8999988865433 32222 34677999999977765332 2334554442
Q ss_pred CCCCceeEEeee--cCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCC-ce-EEEEee-cCCEE
Q 004839 203 GSTDEDALLLEE--SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-LA-HCIVEH-HEGFL 277 (728)
Q Consensus 203 ~t~~~~~lv~~~--~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~-~~-~~~~~~-dg~~l 277 (728)
........+..+ ....|.....+.+|+. |+ +++. .....+.|+++ ++......... ++ ...++| +++.
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~dD~~-il-T~SG--D~TCalWDie~--g~~~~~f~GH~gDV~slsl~p~~~nt- 201 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLDDNH-IL-TGSG--DMTCALWDIET--GQQTQVFHGHTGDVMSLSLSPSDGNT- 201 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcCCCc-eE-ecCC--CceEEEEEccc--ceEEEEecCCcccEEEEecCCCCCCe-
Confidence 211111111111 1223444456666665 32 3332 23456778887 33333333332 22 234455 4443
Q ss_pred EEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEEeeCC-EEEEEEecCCeeEEEE
Q 004839 278 YLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKT-HMALILREGRTYRLCS 345 (728)
Q Consensus 278 ~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~~~~~-~lv~~~~~~g~~~l~~ 345 (728)
|+...-+. ..+|+.+-.. .--+.+ +..+-+|..+..+++ .-+..-.+++.-+++-
T Consensus 202 FvSg~cD~------~aklWD~R~~-----~c~qtF--~ghesDINsv~ffP~G~afatGSDD~tcRlyD 257 (343)
T KOG0286|consen 202 FVSGGCDK------SAKLWDVRSG-----QCVQTF--EGHESDINSVRFFPSGDAFATGSDDATCRLYD 257 (343)
T ss_pred EEeccccc------ceeeeeccCc-----ceeEee--cccccccceEEEccCCCeeeecCCCceeEEEe
Confidence 33222222 2345543211 112222 334556777877764 4555556677655543
No 366
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=88.94 E-value=5 Score=40.96 Aligned_cols=121 Identities=15% Similarity=0.175 Sum_probs=71.1
Q ss_pred eeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCC----ceeccCccceeeeEEEecCCCEEEEEEecCCCCcceeEEEE
Q 004839 126 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSG----ALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 201 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg----~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~ 201 (728)
...++|||.+.++|..+ |.....|+-+.-+.. +.+...+...+..+.|.|++-.|+-...|..-|-...|+..
T Consensus 103 At~V~WsP~enkFAVgS---gar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~ 179 (361)
T KOG1523|consen 103 ATCVKWSPKENKFAVGS---GARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKG 179 (361)
T ss_pred eeeEeecCcCceEEecc---CccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeec
Confidence 44567999999998864 232333333333321 11222223467889999998666655544433444566666
Q ss_pred CCCCCc-----eeEEe-----ee-cCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCC
Q 004839 202 IGSTDE-----DALLL-----EE-SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 252 (728)
Q Consensus 202 l~t~~~-----~~lv~-----~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~ 252 (728)
++.... ..+.| +- ..+.+..++.|||+|..|.+...+. -+++.|...+
T Consensus 180 Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds---~v~~~da~~p 238 (361)
T KOG1523|consen 180 VDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDS---TVSFVDAAGP 238 (361)
T ss_pred cccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCC---ceEEeecCCC
Confidence 654321 12222 21 2334456789999999999887654 4677777764
No 367
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=88.36 E-value=36 Score=35.75 Aligned_cols=112 Identities=10% Similarity=0.040 Sum_probs=60.3
Q ss_pred ceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-----cceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 128 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-----AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 128 ~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-----~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
.+.||| +.+..-..|+=...|+++...+|....... ...+..++|||..+.++.+.+-+. .|-+.|+
T Consensus 216 ~LdWSp----~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg----sIrIWDi 287 (440)
T KOG0302|consen 216 GLDWSP----IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG----SIRIWDI 287 (440)
T ss_pred eeeccc----ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCc----eEEEEEe
Confidence 456888 223222234445569999999887543322 336778999999999998865432 3444555
Q ss_pred CCCC-ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 203 GSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 203 ~t~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
.+++ ...+.....+. ..--++|+.+-- ++.+..+.+ .+.+.||..
T Consensus 288 Rs~~~~~~~~~kAh~s-DVNVISWnr~~~-lLasG~DdG--t~~iwDLR~ 333 (440)
T KOG0302|consen 288 RSGPKKAAVSTKAHNS-DVNVISWNRREP-LLASGGDDG--TLSIWDLRQ 333 (440)
T ss_pred cCCCccceeEeeccCC-ceeeEEccCCcc-eeeecCCCc--eEEEEEhhh
Confidence 5543 22333222222 222356766555 222223323 355556543
No 368
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=88.35 E-value=11 Score=37.87 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=51.1
Q ss_pred ccEEEEEcCCCCCCcCcccHHHHHHHHH-CCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCC
Q 004839 496 NPGLLHGHGAYGELLDKRWRSELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 574 (728)
Q Consensus 496 ~P~vv~~hGg~~~~~~~~~~~~~~~l~~-~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 574 (728)
.| +|..||-.......++....+.+-+ -|..|.+.+.- .| -... +-. ...+.++.+...+++.---+
T Consensus 24 ~P-~ii~HGigd~c~~~~~~~~~q~l~~~~g~~v~~leig-~g-~~~s--------~l~-pl~~Qv~~~ce~v~~m~~ls 91 (296)
T KOG2541|consen 24 VP-VIVWHGIGDSCSSLSMANLTQLLEELPGSPVYCLEIG-DG-IKDS--------SLM-PLWEQVDVACEKVKQMPELS 91 (296)
T ss_pred CC-EEEEeccCcccccchHHHHHHHHHhCCCCeeEEEEec-CC-cchh--------hhc-cHHHHHHHHHHHHhcchhcc
Confidence 45 4566985444444455666677776 48888888863 22 1111 111 23333333333333333335
Q ss_pred CcEEEEEeCccHHHHHHHHHh
Q 004839 575 HKLAGWGYSAGGLLVAAAINC 595 (728)
Q Consensus 575 ~ri~i~G~S~GG~~~~~~~~~ 595 (728)
+-.-++|.|.||.++=+++-.
T Consensus 92 qGynivg~SQGglv~Raliq~ 112 (296)
T KOG2541|consen 92 QGYNIVGYSQGGLVARALIQF 112 (296)
T ss_pred CceEEEEEccccHHHHHHHHh
Confidence 678999999999998777754
No 369
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=87.99 E-value=0.71 Score=42.83 Aligned_cols=25 Identities=28% Similarity=0.114 Sum_probs=21.2
Q ss_pred CCCcEEEEEeCccHHHHHHHHHhCC
Q 004839 573 KEHKLAGWGYSAGGLLVAAAINCCP 597 (728)
Q Consensus 573 d~~ri~i~G~S~GG~~~~~~~~~~p 597 (728)
...+|.+.|||+||.++..++....
T Consensus 26 p~~~i~v~GHSlGg~lA~l~a~~~~ 50 (153)
T cd00741 26 PDYKIHVTGHSLGGALAGLAGLDLR 50 (153)
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 4579999999999999999877644
No 370
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=87.79 E-value=35 Score=34.86 Aligned_cols=74 Identities=20% Similarity=0.175 Sum_probs=47.0
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCC-CceeccCc---cceeeeEEEecCCCEEEEEEecCCCCcceeEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNS-GALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 200 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~t-g~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~ 200 (728)
.++.++|||.-..++....-+| +++++++.. |....... ...+-..+|+.||..+|-...| .++-..
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~----tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~D-----k~~k~w 99 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDG----TVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCD-----KQAKLW 99 (347)
T ss_pred chheeEeccccCceEEecccCC----ceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccC-----CceEEE
Confidence 6888899994444433323444 488888876 44433221 3456788999999766554333 256777
Q ss_pred ECCCCCc
Q 004839 201 IIGSTDE 207 (728)
Q Consensus 201 ~l~t~~~ 207 (728)
||.+++.
T Consensus 100 DL~S~Q~ 106 (347)
T KOG0647|consen 100 DLASGQV 106 (347)
T ss_pred EccCCCe
Confidence 9988863
No 371
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=87.70 E-value=0.73 Score=48.23 Aligned_cols=57 Identities=16% Similarity=0.274 Sum_probs=43.3
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc---cc-eeeeEEEecCCCEEEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AV-RVSNIAWAKDGQALIYV 186 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~-~~~~~~WspDg~~l~y~ 186 (728)
......|||||.|+|-.+ .+|+ ||||++.+|+...... .. .+..++|.|-|+.++-.
T Consensus 389 DwtrvvfSpd~~YvaAGS-~dgs----v~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 389 DWTRVVFSPDGSYVAAGS-ADGS----VYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred ccceeEECCCCceeeecc-CCCc----EEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 355678999999999875 4554 9999999998654322 22 57889999999987654
No 372
>PRK13614 lipoprotein LpqB; Provisional
Probab=87.70 E-value=45 Score=38.03 Aligned_cols=162 Identities=10% Similarity=-0.062 Sum_probs=85.5
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCccceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC-C
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII-G 203 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l-~ 203 (728)
.+..+.+|+||+.+|+.. ++ ...+++.... +.......-.....+.|.++| +++ +..+ ..+.+|.+..- +
T Consensus 344 ~~~s~avS~~g~~~A~~~---~~-~~~l~~~~~g-~~~~~~~~g~~Lt~PS~d~~g-~vW-tv~~--g~~~~vv~~~~~g 414 (573)
T PRK13614 344 GPASPAESPVSQTVAFLN---GS-RTTLYTVSPG-QPARALTSGSTLTRPSFSPQD-WVW-TAGP--GGNGRIVAYRPTG 414 (573)
T ss_pred cccceeecCCCceEEEec---CC-CcEEEEecCC-CcceeeecCCCccCCcccCCC-CEE-EeeC--CCCceEEEEecCC
Confidence 455688999999999972 22 2467776652 232222222245677888887 554 3333 22335666442 1
Q ss_pred CCC---ce--eEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC-CCCCeEEeeecC-----CceEEEEee
Q 004839 204 STD---ED--ALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD-PFSGLTLIWECE-----GLAHCIVEH 272 (728)
Q Consensus 204 t~~---~~--~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~-~~~~~~~l~~~~-----~~~~~~~~~ 272 (728)
++. .. .+.....+..-...+.+|+||-.+++.....+..+|++.-+.. ..+.++.|.... .......+-
T Consensus 415 ~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~ 494 (573)
T PRK13614 415 VAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWV 494 (573)
T ss_pred CcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEc
Confidence 211 01 1111112223356789999999988877655555676533221 124455544321 111112235
Q ss_pred cCCEEEEEEcCCccCCCCCceEEEEeeC
Q 004839 273 HEGFLYLFTDAAKEGQEADNHYLLRCPV 300 (728)
Q Consensus 273 dg~~l~~~tn~~~~~~~~~~~~l~~~~~ 300 (728)
+++.|++++...++ +..++.+.+
T Consensus 495 ~~~sl~V~~~~~~~-----~~~~~~v~v 517 (573)
T PRK13614 495 GDSTVVVTKASATS-----NVVPELLSV 517 (573)
T ss_pred CCCEEEEEeccCCC-----cceEEEEEe
Confidence 56778888765432 344555555
No 373
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=87.63 E-value=0.87 Score=47.59 Aligned_cols=107 Identities=16% Similarity=0.147 Sum_probs=66.0
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCc------ce
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRP------YQ 196 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~------~~ 196 (728)
.+....||||+.++++.+- + ..++++|+..|....... ...+..++|.|-++.|.-...++..+. ..
T Consensus 125 diydL~Ws~d~~~l~s~s~-d----ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 125 DIYDLAWSPDSNFLVSGSV-D----NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred chhhhhccCCCceeeeeec-c----ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee
Confidence 4557789999999988742 2 348999999998776543 335678999999987765544442111 11
Q ss_pred eEEEE-------CCCCC--ceeEEe-eecCcceEEEEEEcCCCCEEEEEE
Q 004839 197 IYCSI-------IGSTD--EDALLL-EESNENVYVNIRHTKDFHFVCVHT 236 (728)
Q Consensus 197 v~~~~-------l~t~~--~~~lv~-~~~~~~~~~~~~~SpDg~~l~~~~ 236 (728)
++++. .+... ....+| ++.-..||-.++|||||..|+.-+
T Consensus 200 ~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 200 IKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred eeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 22222 11111 112233 334446777789999999776543
No 374
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=87.53 E-value=42 Score=35.53 Aligned_cols=113 Identities=11% Similarity=0.162 Sum_probs=74.6
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCc-eeccCc--------cceeeeEEEecCCCEEEEEEecCCCCcc
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA-LCSKPQ--------AVRVSNIAWAKDGQALIYVVTDQNKRPY 195 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~-~~~~~~--------~~~~~~~~WspDg~~l~y~~~~~~~~~~ 195 (728)
.+-...|+|=...+.- .|+|...|.|+.+-.+- ...++. ..+++-++|.|--.-+++++. ..+
T Consensus 83 ~vLDi~w~PfnD~vIA----SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag----~Dn 154 (472)
T KOG0303|consen 83 PVLDIDWCPFNDCVIA----SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG----SDN 154 (472)
T ss_pred cccccccCccCCceee----cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc----CCc
Confidence 5566779997665533 25667789999875543 222221 236788999998777777643 345
Q ss_pred eeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 196 QIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 196 ~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
.|...+++|+. ..+... .+....++.|+.||.+|+-++.+ ..|.++|..+
T Consensus 155 ~v~iWnv~tge-ali~l~--hpd~i~S~sfn~dGs~l~TtckD---KkvRv~dpr~ 204 (472)
T KOG0303|consen 155 TVSIWNVGTGE-ALITLD--HPDMVYSMSFNRDGSLLCTTCKD---KKVRVIDPRR 204 (472)
T ss_pred eEEEEeccCCc-eeeecC--CCCeEEEEEeccCCceeeeeccc---ceeEEEcCCC
Confidence 78999999985 222222 33345678999999998766654 3688888766
No 375
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=87.06 E-value=12 Score=38.09 Aligned_cols=112 Identities=10% Similarity=0.002 Sum_probs=65.3
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCce---eccCccceeeeEEEecCCCEEEEEEecCCCCcceeEEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL---CSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 201 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~---~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~ 201 (728)
.+...+|+|||..+|-. |. ..+|+++++.+-.. +...-.+.+..+.|.+|++.|+-...| ..|+..|
T Consensus 49 eI~~~~F~P~gs~~aSg----G~-Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtD-----k~v~~wD 118 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASG----GS-DRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTD-----KTVRGWD 118 (338)
T ss_pred eEEEEEECCCCCeEeec----CC-cceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCC-----ceEEEEe
Confidence 56778899999977643 33 35799999765431 111125577889999999988765433 2688889
Q ss_pred CCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCC
Q 004839 202 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAA 250 (728)
Q Consensus 202 l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~ 250 (728)
+.+++.... +. .+..+.-.+..+.=|-.++.+...+.+ +.+.|..
T Consensus 119 ~~tG~~~rk-~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t--~kl~D~R 163 (338)
T KOG0265|consen 119 AETGKRIRK-HK-GHTSFVNSLDPSRRGPQLVCSGSDDGT--LKLWDIR 163 (338)
T ss_pred cccceeeeh-hc-cccceeeecCccccCCeEEEecCCCce--EEEEeec
Confidence 888753221 11 223333233333444455544444433 4444544
No 376
>PRK02888 nitrous-oxide reductase; Validated
Probab=86.69 E-value=3.5 Score=46.64 Aligned_cols=112 Identities=13% Similarity=-0.010 Sum_probs=61.1
Q ss_pred ceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCccceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCC-
Q 004839 128 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD- 206 (728)
Q Consensus 128 ~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~- 206 (728)
...+||||+++..+.. +.....++..++.............. .-++.+||+..++. ..+|-.+|..+..
T Consensus 239 ~v~~spdGk~afvTsy-NsE~G~tl~em~a~e~d~~vvfni~~--iea~vkdGK~~~V~-------gn~V~VID~~t~~~ 308 (635)
T PRK02888 239 NVDTDYDGKYAFSTCY-NSEEGVTLAEMMAAERDWVVVFNIAR--IEEAVKAGKFKTIG-------GSKVPVVDGRKAAN 308 (635)
T ss_pred cceECCCCCEEEEecc-CcccCcceeeeccccCceEEEEchHH--HHHhhhCCCEEEEC-------CCEEEEEECCcccc
Confidence 4568999998877642 21112346666654432211111111 12567799976652 2468888877610
Q ss_pred -ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 207 -EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 207 -~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
...++..-+-+..-.++.+||||+|++++.. .++.+-++|+++
T Consensus 309 ~~~~v~~yIPVGKsPHGV~vSPDGkylyVank--lS~tVSVIDv~k 352 (635)
T PRK02888 309 AGSALTRYVPVPKNPHGVNTSPDGKYFIANGK--LSPTVTVIDVRK 352 (635)
T ss_pred CCcceEEEEECCCCccceEECCCCCEEEEeCC--CCCcEEEEEChh
Confidence 0112221111222235788999999987654 345677888866
No 377
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=86.69 E-value=2.4 Score=46.10 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=34.0
Q ss_pred eeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCCceeEEeeecCcceE---EEEEEcCCCCEEEE
Q 004839 170 RVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVY---VNIRHTKDFHFVCV 234 (728)
Q Consensus 170 ~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~~lv~~~~~~~~~---~~~~~SpDg~~l~~ 234 (728)
.+..++|||||+.|+.+..|. -|.+.+..+. .++ . .-..|| +-+.||||||||+.
T Consensus 292 ~in~f~FS~DG~~LA~VSqDG-----fLRvF~fdt~---eLl-g-~mkSYFGGLLCvcWSPDGKyIvt 349 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDG-----FLRIFDFDTQ---ELL-G-VMKSYFGGLLCVCWSPDGKYIVT 349 (636)
T ss_pred cccceeEcCCCceEEEEecCc-----eEEEeeccHH---HHH-H-HHHhhccceEEEEEcCCccEEEe
Confidence 456789999999999986542 2333344331 111 1 111233 45799999999875
No 378
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=86.48 E-value=14 Score=38.56 Aligned_cols=114 Identities=16% Similarity=0.105 Sum_probs=72.0
Q ss_pred EEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceecc-CccceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 124 AYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSK-PQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 124 ~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
-.++.+.|++ .-++|+..- ..+|.++|+++|..... +.......+.-+|..+.|+-...+ ..+.++|-
T Consensus 261 ~~Vs~V~w~d--~~v~yS~Sw----DHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssd-----r~irl~DP 329 (423)
T KOG0313|consen 261 EPVSSVVWSD--ATVIYSVSW----DHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSD-----RHIRLWDP 329 (423)
T ss_pred cceeeEEEcC--CCceEeecc----cceEEEEEeecccceeeeecCcceeEeecccccceeeecCCC-----CceeecCC
Confidence 3788899999 446887643 35699999999875442 223355678888988766655433 24566666
Q ss_pred CCCCceeE--EeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 203 GSTDEDAL--LLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 203 ~t~~~~~l--v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
.++..... .+-.. ..+...+.|+|-..|++++.+-+++..+| |+..
T Consensus 330 R~~~gs~v~~s~~gH-~nwVssvkwsp~~~~~~~S~S~D~t~klW--DvRS 377 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGH-KNWVSSVKWSPTNEFQLVSGSYDNTVKLW--DVRS 377 (423)
T ss_pred CCCCCceeEEeeecc-hhhhhheecCCCCceEEEEEecCCeEEEE--Eecc
Confidence 55532111 12222 22445789999999998887766555544 5544
No 379
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=86.48 E-value=43 Score=34.55 Aligned_cols=113 Identities=13% Similarity=0.050 Sum_probs=56.4
Q ss_pred eeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCC-----C--ceec--c------CccceeeeEEEe-------cCCCEE
Q 004839 126 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNS-----G--ALCS--K------PQAVRVSNIAWA-------KDGQAL 183 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~t-----g--~~~~--~------~~~~~~~~~~Ws-------pDg~~l 183 (728)
+-+.+|||||.-|.-.+..++ |.++++-. + .... . ...+.+...+|= |+...+
T Consensus 52 ~kgckWSPDGSciL~~sedn~-----l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~ 126 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNC-----LNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLF 126 (406)
T ss_pred hccceeCCCCceEEeecccCe-----eeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcccee
Confidence 445679999998776543222 55555421 1 1111 0 012244556664 443322
Q ss_pred EEEEecCCCCcceeEEEECCCCCce--eEEeeecCc-ceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCC
Q 004839 184 IYVVTDQNKRPYQIYCSIIGSTDED--ALLLEESNE-NVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 252 (728)
Q Consensus 184 ~y~~~~~~~~~~~v~~~~l~t~~~~--~lv~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~ 252 (728)
+.++ |..-|.+.|.-+++.+ -..|...|. .-..++.|||||.+|+.--+ +-|.+.|+..+
T Consensus 127 a~ss-----r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk----rcirvFdt~Rp 189 (406)
T KOG2919|consen 127 AVSS-----RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK----RCIRVFDTSRP 189 (406)
T ss_pred eecc-----ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc----ceEEEeeccCC
Confidence 2221 2224556666665411 111211111 11246899999999874333 34777777543
No 380
>PRK13613 lipoprotein LpqB; Provisional
Probab=86.48 E-value=33 Score=39.48 Aligned_cols=165 Identities=14% Similarity=0.042 Sum_probs=84.2
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCce-----eccCccceeeeEEEecCCCEEEEEEecCCCCcceeEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL-----CSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 199 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~-----~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~ 199 (728)
.+..+.+|+||+.+|+.. ..+ ..|++-.+..+.. ...........+.|.++| +++-. +......++.+
T Consensus 364 ~~~s~avS~~g~~~A~v~-~~~---~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtv--d~~~~~~~vl~ 436 (599)
T PRK13613 364 PLRRVAVSRDESRAAGIS-ADG---DSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVV--DRDPADPRLLW 436 (599)
T ss_pred CccceEEcCCCceEEEEc-CCC---cEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEe--cCCCCCceEEE
Confidence 456789999999999984 222 4688877655443 111112345677888877 45433 22111223333
Q ss_pred EECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC-CCCC-----eEEeeecCCceEEEEeec
Q 004839 200 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD-PFSG-----LTLIWECEGLAHCIVEHH 273 (728)
Q Consensus 200 ~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~-~~~~-----~~~l~~~~~~~~~~~~~d 273 (728)
.--.++....+-...-+..-...+.+|+||-.+++.....+..+|++--+.. ..+. ++.+.+.-.......+-+
T Consensus 437 v~~~~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~ 516 (599)
T PRK13613 437 LLQGDGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAG 516 (599)
T ss_pred EEcCCCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcC
Confidence 2212332111111111222356789999999998887765555666443321 1122 222222222222222345
Q ss_pred CCEEEEEEcCCccCCCCCceEEEEeeCC
Q 004839 274 EGFLYLFTDAAKEGQEADNHYLLRCPVD 301 (728)
Q Consensus 274 g~~l~~~tn~~~~~~~~~~~~l~~~~~~ 301 (728)
++.|+++....++ +..++.+.++
T Consensus 517 ~~sL~Vlg~~~~~-----~~~v~~v~vd 539 (599)
T PRK13613 517 DSQLVVLGREEGG-----VQQARYVQVD 539 (599)
T ss_pred CCEEEEEeccCCC-----CcceEEEecC
Confidence 6778776533221 3457777776
No 381
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=86.28 E-value=0.95 Score=43.97 Aligned_cols=86 Identities=12% Similarity=-0.004 Sum_probs=55.4
Q ss_pred CeEEEEEcCCCCCCCCCc-cccccccCCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhC----C--
Q 004839 525 GWVVAFADVRGGGGGGKK-WHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCC----P-- 597 (728)
Q Consensus 525 Gy~v~~~d~RG~g~~G~~-~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~----p-- 597 (728)
=..|+.|-||=..-+... -............+.|+.++.++.+++- -+...+.+.|||.|+.+...++..+ |
T Consensus 45 ~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~-n~GRPfILaGHSQGs~~l~~LL~e~~~~~pl~ 123 (207)
T PF11288_consen 45 VCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANY-NNGRPFILAGHSQGSMHLLRLLKEEIAGDPLR 123 (207)
T ss_pred CCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhc-CCCCCEEEEEeChHHHHHHHHHHHHhcCchHH
Confidence 456888888865532111 0011111223457899999999988753 2346899999999999999998653 2
Q ss_pred -CceeEEEEeCCccc
Q 004839 598 -DLFRAVVLEVPFLD 611 (728)
Q Consensus 598 -~~f~a~v~~~p~~d 611 (728)
.+++|-+...++..
T Consensus 124 ~rLVAAYliG~~v~~ 138 (207)
T PF11288_consen 124 KRLVAAYLIGYPVTV 138 (207)
T ss_pred hhhheeeecCccccH
Confidence 25666666666543
No 382
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=86.14 E-value=2.4 Score=32.65 Aligned_cols=48 Identities=27% Similarity=0.438 Sum_probs=26.5
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCC--CCCCCCccEEEEEcCCCCCC
Q 004839 462 SEFYSCEQYDVPSHDGISVPLTIIYSPK--YKKENQNPGLLHGHGAYGEL 509 (728)
Q Consensus 462 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~--~~~~~~~P~vv~~hGg~~~~ 509 (728)
...|.+|...+.+.||.-+...=+.++. .....+.|+|++.||-.+++
T Consensus 7 ~~GY~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss 56 (63)
T PF04083_consen 7 KHGYPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSS 56 (63)
T ss_dssp HTT---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--G
T ss_pred HcCCCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccCh
Confidence 3568899999999999888776555443 22345678999999966544
No 383
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=86.10 E-value=4.3 Score=43.56 Aligned_cols=60 Identities=13% Similarity=0.238 Sum_probs=42.4
Q ss_pred eeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEec
Q 004839 126 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTD 189 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~ 189 (728)
..-+++-||+..+.+.--.++ .|.-+|+.+|+.++... .+.+..+.|-++|++++-++.+
T Consensus 302 ~~cvkf~pd~~n~fl~G~sd~----ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 302 PTCVKFHPDNQNIFLVGGSDK----KIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred ceeeecCCCCCcEEEEecCCC----cEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 445678999977755532233 48999999999776543 4467788899999888766443
No 384
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.00 E-value=53 Score=36.32 Aligned_cols=47 Identities=6% Similarity=0.162 Sum_probs=24.1
Q ss_pred eeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCccceeeeEEEecCCC
Q 004839 126 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQ 181 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~ 181 (728)
...++.||+|+.++.. |+..+.||- ... . +....+....++|++.++
T Consensus 35 p~~ls~npngr~v~V~----g~geY~iyt--~~~--~-r~k~~G~g~~~vw~~~n~ 81 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVC----GDGEYEIYT--ALA--W-RNKAFGSGLSFVWSSRNR 81 (443)
T ss_dssp -SEEEE-TTSSEEEEE----ETTEEEEEE--TTT--T-EEEEEEE-SEEEE-TSSE
T ss_pred CeeEEECCCCCEEEEE----cCCEEEEEE--ccC--C-cccccCceeEEEEecCcc
Confidence 5667889999988882 223466664 111 1 111123445688888665
No 385
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=85.92 E-value=9 Score=41.24 Aligned_cols=114 Identities=8% Similarity=-0.040 Sum_probs=71.6
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCC-CceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNS-GALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 201 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~t-g~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~ 201 (728)
.++.++|.|-.-+|..+...++ .|+|+++-. ++.++... ...+..+.|+++|+.|+-+..|. -|-..|
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~----~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~-----~lKlwD 286 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDG----LVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR-----FLKLWD 286 (503)
T ss_pred ccchhhhccceeeEEEecCCCc----eEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce-----eeeeec
Confidence 6788999995555545433333 489999876 44444322 23567899999999988776653 355567
Q ss_pred CCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCC
Q 004839 202 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 252 (728)
Q Consensus 202 l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~ 252 (728)
+.|++. ..-++..... ..+.+.||+..+++...++ .+|...|..++
T Consensus 287 tETG~~-~~~f~~~~~~--~cvkf~pd~~n~fl~G~sd--~ki~~wDiRs~ 332 (503)
T KOG0282|consen 287 TETGQV-LSRFHLDKVP--TCVKFHPDNQNIFLVGGSD--KKIRQWDIRSG 332 (503)
T ss_pred cccceE-EEEEecCCCc--eeeecCCCCCcEEEEecCC--CcEEEEeccch
Confidence 777752 1223332222 2357789997666655432 46778887663
No 386
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=85.86 E-value=95 Score=37.98 Aligned_cols=60 Identities=10% Similarity=0.133 Sum_probs=41.1
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEE----ECCCCceeccCc-cceeeeEEEecCCCEEEEEEec
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVR----NLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTD 189 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~----dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~ 189 (728)
.+-++.+-+|...|.+.. .+|+ |.+. +..+.+.-.+.. ..++..++||||+..|+++...
T Consensus 77 ~ivs~~yl~d~~~l~~~~-~~Gd----i~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~ 141 (928)
T PF04762_consen 77 KIVSFQYLADSESLCIAL-ASGD----IILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGE 141 (928)
T ss_pred cEEEEEeccCCCcEEEEE-CCce----EEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCC
Confidence 566677788888887775 4553 6666 555544333322 5588999999999988887543
No 387
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.69 E-value=7 Score=39.42 Aligned_cols=103 Identities=11% Similarity=-0.069 Sum_probs=56.7
Q ss_pred eeeCCCCC-EEEEEEEcCCCcEEEEEEEECCCCceeccCc--cc--eeeeEEEecCCCEEEEEEecCCCCcceeEEEECC
Q 004839 129 SEVSPDHK-FLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AV--RVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 203 (728)
Q Consensus 129 ~~~SPDG~-~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~--~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~ 203 (728)
+.++|--+ -+||. .+.|.. -+|.|+.+++...... ++ -++.-.|||||++||-+.++-.....-|=.+|..
T Consensus 73 i~~~p~~~ravafA-RrPGtf---~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 73 IAFHPALPRAVAFA-RRPGTF---AMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred eecCCCCcceEEEE-ecCCce---EEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 34677554 45555 466653 5788998886544322 33 3456799999998888866543222334445543
Q ss_pred CCCceeEEeeecCcceEEEEEEcCCCCEEEEEE
Q 004839 204 STDEDALLLEESNENVYVNIRHTKDFHFVCVHT 236 (728)
Q Consensus 204 t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~ 236 (728)
..-...--+....-. -..+.|.+||+.|++..
T Consensus 149 ~~fqrvgE~~t~GiG-pHev~lm~DGrtlvvan 180 (366)
T COG3490 149 EGFQRVGEFSTHGIG-PHEVTLMADGRTLVVAN 180 (366)
T ss_pred cccceecccccCCcC-cceeEEecCCcEEEEeC
Confidence 221111111100000 02468899999887654
No 388
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=84.64 E-value=42 Score=34.09 Aligned_cols=132 Identities=13% Similarity=0.170 Sum_probs=72.8
Q ss_pred EEeecccccccCCceE---EeeceeeCCC---CCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCC
Q 004839 109 KLLDYNQEAERFGGYA---YEELSEVSPD---HKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDG 180 (728)
Q Consensus 109 ~lld~n~~~~~~~~~~---~~~~~~~SPD---G~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg 180 (728)
.+.|.|.+.+... |. .+..-.|||= ..+||.. .+ ..+|.+-|+++|....... .+.+-.+.|||-.
T Consensus 127 KVWDtnTlQ~a~~-F~me~~VYshamSp~a~sHcLiA~g--tr---~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 127 KVWDTNTLQEAVD-FKMEGKVYSHAMSPMAMSHCLIAAG--TR---DVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred EEeecccceeeEE-eecCceeehhhcChhhhcceEEEEe--cC---CCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence 4678887654311 11 3344557774 3455544 22 3569999999998554332 5678899999999
Q ss_pred CEEEEEEecCCCCcceeEEEECCCCC----------ceeEEe-eecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeC
Q 004839 181 QALIYVVTDQNKRPYQIYCSIIGSTD----------EDALLL-EESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINA 249 (728)
Q Consensus 181 ~~l~y~~~~~~~~~~~v~~~~l~t~~----------~~~lv~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl 249 (728)
.+++++..-+. .-++|-++-.++. ....+- ......-+.+++|+.||++++.... .+++.+.+.
T Consensus 201 e~vLatgsaDg--~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt---d~r~r~wn~ 275 (397)
T KOG4283|consen 201 EWVLATGSADG--AIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT---DDRIRVWNM 275 (397)
T ss_pred eeEEEecCCCc--eEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC---ccceEEeec
Confidence 99999865332 2233333222221 001110 0011122357899999999864332 234445554
Q ss_pred CC
Q 004839 250 AD 251 (728)
Q Consensus 250 ~~ 251 (728)
..
T Consensus 276 ~~ 277 (397)
T KOG4283|consen 276 ES 277 (397)
T ss_pred cc
Confidence 44
No 389
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=84.09 E-value=11 Score=40.19 Aligned_cols=115 Identities=9% Similarity=0.094 Sum_probs=70.6
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc---cceeeeEEEecCCCEEEEEEecCCCCcceeEEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 201 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~ 201 (728)
.+...+|+|=+.+|.-+.+.++ +|.++|+..-....-+. .+.+..+.|||+...++-++.. ..+|...|
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~----tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~rl~vWD 345 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADK----TVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRRLNVWD 345 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCC----cEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCcEEEEe
Confidence 5667889998777665544443 49999998754333222 4578899999999998877532 23455556
Q ss_pred CCCCCc-----------eeEEeee-cCcceEEEEEEcCCCCEEEEEEcCCCceEEEEE
Q 004839 202 IGSTDE-----------DALLLEE-SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLI 247 (728)
Q Consensus 202 l~t~~~-----------~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~ 247 (728)
+..-.+ ..++|.- ....-..++.|.|..-+++.+....+.-+||.+
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 532211 1223311 111112467888998888877776655566644
No 390
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=83.89 E-value=8.6 Score=41.98 Aligned_cols=122 Identities=11% Similarity=0.044 Sum_probs=74.4
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCcCcccHHHHHHHHHCCeE-EEEEcCCCCCCCCCccccccccCCCC
Q 004839 475 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWV-VAFADVRGGGGGGKKWHHDGRRTKKL 553 (728)
Q Consensus 475 ~dG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~-v~~~d~RG~g~~G~~~~~~~~~~~~~ 553 (728)
..+.++-. ++.|-++ |.|+.||.-|- -.. .+|... -.|-+.|.. .++-|+|-.|| +|+. |.
T Consensus 273 ~~reEi~y-YFnPGD~----KPPL~VYFSGy-R~a--EGFEgy-~MMk~Lg~PfLL~~DpRleGG---aFYl------Gs 334 (511)
T TIGR03712 273 SKRQEFIY-YFNPGDF----KPPLNVYFSGY-RPA--EGFEGY-FMMKRLGAPFLLIGDPRLEGG---AFYL------GS 334 (511)
T ss_pred CCCCeeEE-ecCCcCC----CCCeEEeeccC-ccc--CcchhH-HHHHhcCCCeEEeeccccccc---eeee------Cc
Confidence 34666654 4566554 56999998873 212 334222 122334555 45678997665 2332 11
Q ss_pred CcH-HHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccchhhc
Q 004839 554 NSI-KDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL 616 (728)
Q Consensus 554 ~~~-~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~~~~ 616 (728)
..+ .-++..++..++.--.+++.+.+.|-|||-+-|+..+++-. -+|+|..-|++++-+..
T Consensus 335 ~eyE~~I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l~--P~AIiVgKPL~NLGtiA 396 (511)
T TIGR03712 335 DEYEQGIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKLS--PHAIIVGKPLVNLGTIA 396 (511)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccCC--CceEEEcCcccchhhhh
Confidence 122 22334444444333347899999999999999999988632 36899999999987643
No 391
>PRK13615 lipoprotein LpqB; Provisional
Probab=83.79 E-value=85 Score=35.73 Aligned_cols=159 Identities=11% Similarity=-0.027 Sum_probs=82.7
Q ss_pred eceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCccceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCC
Q 004839 127 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD 206 (728)
Q Consensus 127 ~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~ 206 (728)
..+.+|+||+.+|+.. ..+ .+++-... +.............+.|.++| +++ +..+.. ...+.+.. .++.
T Consensus 337 ~s~avS~dg~~~A~v~-~~~----~l~vg~~~-~~~~~~~~~~~Lt~PS~d~~g-~vW-tv~~g~--~~~l~~~~-~~G~ 405 (557)
T PRK13615 337 DAATLSADGRQAAVRN-ASG----VWSVGDGD-RDAVLLDTRPGLVAPSLDAQG-YVW-STPASD--PRGLVAWG-PDGV 405 (557)
T ss_pred ccceEcCCCceEEEEc-CCc----eEEEecCC-CcceeeccCCccccCcCcCCC-CEE-EEeCCC--ceEEEEec-CCCc
Confidence 5678999999999983 222 46666554 232222222346678888888 554 433322 22333322 2222
Q ss_pred ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEe-ee------cCCceEEEEeecCCEEEE
Q 004839 207 EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLI-WE------CEGLAHCIVEHHEGFLYL 279 (728)
Q Consensus 207 ~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l-~~------~~~~~~~~~~~dg~~l~~ 279 (728)
...+-..-....-...+.+|+||-.+++.....+..+|++.-+....+.++.| .. .........+-+++.|.+
T Consensus 406 ~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laV 485 (557)
T PRK13615 406 GHPVAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVAT 485 (557)
T ss_pred eEEeeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEE
Confidence 11111111122335678999999999887765555566653222212334444 21 111111122345677888
Q ss_pred EEcCCccCCCCCceEEEEeeCC
Q 004839 280 FTDAAKEGQEADNHYLLRCPVD 301 (728)
Q Consensus 280 ~tn~~~~~~~~~~~~l~~~~~~ 301 (728)
++...+. +..++.+.+.
T Consensus 486 l~~~~~~-----~~~v~~v~v~ 502 (557)
T PRK13615 486 LTLAPDG-----ERQVELHQVG 502 (557)
T ss_pred EeccCCC-----CceEEEEECC
Confidence 8744332 3456677765
No 392
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=83.69 E-value=17 Score=41.51 Aligned_cols=118 Identities=9% Similarity=0.028 Sum_probs=73.3
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCce--eccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL--CSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 201 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~--~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~ 201 (728)
++.+++|||--...-++...+|. |.++|+.--.. ++.+. .+-+....|+|++.+|+-. .|...|-+.+
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG~----lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATG-----GRDK~vkiWd 248 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSGY----LQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATG-----GRDKMVKIWD 248 (839)
T ss_pred hhhceeeccCCCceEEEecCCce----EEEeeccCchhHHHHhhcccCceEEEeecCCCceeeec-----CCCccEEEEe
Confidence 56678888855444444444553 78889865432 22333 3456778999987766543 2444566667
Q ss_pred CCCCC-ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCC
Q 004839 202 IGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPF 253 (728)
Q Consensus 202 l~t~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~ 253 (728)
.+++. ....+.+..- -..-+.|-|+..+.+-++.-.....|++.|+..|-
T Consensus 249 ~t~~~~~~~~tInTia--pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 249 MTDSRAKPKHTINTIA--PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred ccCCCccceeEEeecc--eeeeeeeccCccchhhhhhccccceEEEEeecccc
Confidence 76554 2222222211 12357899999988777776677889999997653
No 393
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=83.67 E-value=70 Score=34.65 Aligned_cols=248 Identities=13% Similarity=0.015 Sum_probs=125.9
Q ss_pred ceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCcc--ceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCC
Q 004839 128 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQA--VRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 205 (728)
Q Consensus 128 ~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~--~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~ 205 (728)
.....|+|..+..... ..+ .+.+.+............ .......-+++++.+|-...+ ...|..+|..+.
T Consensus 35 ~v~~~~~g~~~~v~~~-~~~---~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~----~~~v~vid~~~~ 106 (381)
T COG3391 35 GVAVNPDGTQVYVANS-GSN---DVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGD----SNTVSVIDTATN 106 (381)
T ss_pred eeEEcCccCEEEEEee-cCc---eeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCC----CCeEEEEcCccc
Confidence 3457899987766542 322 566666653322221111 123466788888877665332 346777775554
Q ss_pred CceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCceEEEEeecCCEEEEEEcCCc
Q 004839 206 DEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAK 285 (728)
Q Consensus 206 ~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~tn~~~ 285 (728)
.....+.-.. .-.++.+++|++++++.......+.++++|..+.. ....+.-........++++|..+|... ...
T Consensus 107 ~~~~~~~vG~---~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~-~~~~~~vG~~P~~~a~~p~g~~vyv~~-~~~ 181 (381)
T COG3391 107 TVLGSIPVGL---GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK-VTATIPVGNTPTGVAVDPDGNKVYVTN-SDD 181 (381)
T ss_pred ceeeEeeecc---CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe-EEEEEecCCCcceEEECCCCCeEEEEe-cCC
Confidence 3111111111 22357899999999887765446778999987732 112222222233446678888777754 221
Q ss_pred cCCCCCceEEEEeeCCCCCCCCCC--eE--EeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecCCCCCCcceeecc
Q 004839 286 EGQEADNHYLLRCPVDASFPSRTW--ES--VFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKE 361 (728)
Q Consensus 286 ~~~~~~~~~l~~~~~~~~~~~~~~--~~--li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~ 361 (728)
..|..++.. . ..-+ .. .+........-.+...++++|+....+..-.+..++..++. +
T Consensus 182 -------~~v~vi~~~-~--~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~------v-- 243 (381)
T COG3391 182 -------NTVSVIDTS-G--NSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN------V-- 243 (381)
T ss_pred -------CeEEEEeCC-C--cceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce------E--
Confidence 346666544 1 1111 10 11111111222344456677777666544567777765432 1
Q ss_pred cccccccCCCceeeeecCCCccCCCcEEEEEEccCCCCceEEEEECCCCeEE
Q 004839 362 LHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWN 413 (728)
Q Consensus 362 ~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~~~~ 413 (728)
.....+.... ...+...++++..+.+..+. ...++.+|..+..+.
T Consensus 244 ---~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~---~~~V~vid~~~~~v~ 288 (381)
T COG3391 244 ---TATDLPVGSG-APRGVAVDPAGKAAYVANSQ---GGTVSVIDGATDRVV 288 (381)
T ss_pred ---EEeccccccC-CCCceeECCCCCEEEEEecC---CCeEEEEeCCCCcee
Confidence 0111111110 00112234555544433332 678888888776554
No 394
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=83.46 E-value=6.9 Score=37.66 Aligned_cols=81 Identities=21% Similarity=0.121 Sum_probs=48.0
Q ss_pred cHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHH-HHHHHcCCCCCCcEEEEEeCccHHHHHHH
Q 004839 514 WRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCA-RFLIEKEIVKEHKLAGWGYSAGGLLVAAA 592 (728)
Q Consensus 514 ~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~~~d~~ri~i~G~S~GG~~~~~~ 592 (728)
|......|. ..+.|+.++.+|.+.. . .....++++.... +.+.+ .....++.++|+|+||.++..+
T Consensus 15 ~~~~~~~l~-~~~~v~~~~~~g~~~~-~---------~~~~~~~~~~~~~~~~l~~--~~~~~~~~l~g~s~Gg~~a~~~ 81 (212)
T smart00824 15 YARLAAALR-GRRDVSALPLPGFGPG-E---------PLPASADALVEAQAEAVLR--AAGGRPFVLVGHSSGGLLAHAV 81 (212)
T ss_pred HHHHHHhcC-CCccEEEecCCCCCCC-C---------CCCCCHHHHHHHHHHHHHH--hcCCCCeEEEEECHHHHHHHHH
Confidence 444445554 4688999999987531 1 1112445544422 22332 1224578999999999999777
Q ss_pred HHh---CCCceeEEEEeC
Q 004839 593 INC---CPDLFRAVVLEV 607 (728)
Q Consensus 593 ~~~---~p~~f~a~v~~~ 607 (728)
+.+ .++.+..++...
T Consensus 82 a~~l~~~~~~~~~l~~~~ 99 (212)
T smart00824 82 AARLEARGIPPAAVVLLD 99 (212)
T ss_pred HHHHHhCCCCCcEEEEEc
Confidence 764 345566665443
No 395
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=83.44 E-value=17 Score=44.26 Aligned_cols=108 Identities=12% Similarity=0.146 Sum_probs=64.2
Q ss_pred ceeeCCCCCEEEEEEEcCCC-cEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCC
Q 004839 128 LSEVSPDHKFLAYTMYDKDN-DYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 204 (728)
Q Consensus 128 ~~~~SPDG~~lA~~~~~~g~-e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t 204 (728)
.++|-.||+++|.+.-.... ....|+|++-+ |+...... .+--..++|.|.|..|+-++.. .++ .+|..+.-..
T Consensus 214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~-~~~-~~VvFfErNG 290 (928)
T PF04762_consen 214 RISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRL-PDR-HDVVFFERNG 290 (928)
T ss_pred EEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEc-CCC-cEEEEEecCC
Confidence 46799999999998642222 36789999987 55433322 2334678999999988887642 222 3444333211
Q ss_pred CCceeEEee-ecCcceEEEEEEcCCCCEEEEEEcC
Q 004839 205 TDEDALLLE-ESNENVYVNIRHTKDFHFVCVHTFS 238 (728)
Q Consensus 205 ~~~~~lv~~-~~~~~~~~~~~~SpDg~~l~~~~~~ 238 (728)
-........ .....-...+.|++|+..|++...+
T Consensus 291 LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~ 325 (928)
T PF04762_consen 291 LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED 325 (928)
T ss_pred cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC
Confidence 111111111 1122223568999999999887643
No 396
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=82.81 E-value=68 Score=36.73 Aligned_cols=194 Identities=10% Similarity=0.019 Sum_probs=101.1
Q ss_pred eEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecC---CC-EEEEEEecCCCCccee
Q 004839 123 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKD---GQ-ALIYVVTDQNKRPYQI 197 (728)
Q Consensus 123 ~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspD---g~-~l~y~~~~~~~~~~~v 197 (728)
+-.+.+..+++|+.-+.+.. ++ -.++|+|+.+-+.+.... -+...+....++ ++ .+++++..+ ..+
T Consensus 192 ~S~vtsL~~~~d~~~~ls~~-RD----kvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~----g~~ 262 (775)
T KOG0319|consen 192 KSAVTSLAFSEDSLELLSVG-RD----KVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGS----GVV 262 (775)
T ss_pred hhheeeeeeccCCceEEEec-cC----cEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCC----ceE
Confidence 34778889999988776653 22 348999996654433322 234444555554 33 355664332 234
Q ss_pred EEEECCCCCc-eeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCe-EEeeecCCceE--EEEeec
Q 004839 198 YCSIIGSTDE-DALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGL-TLIWECEGLAH--CIVEHH 273 (728)
Q Consensus 198 ~~~~l~t~~~-~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~-~~l~~~~~~~~--~~~~~d 273 (728)
-..+..+++- .+.- ..+++.+-.......+++.|++++. .++.++|.++ .++ +.+....+.+. .++.++
T Consensus 263 ~~~d~es~~~~~~~~-~~~~~e~~~~~~~~~~~~~l~vtae----Qnl~l~d~~~--l~i~k~ivG~ndEI~Dm~~lG~e 335 (775)
T KOG0319|consen 263 QYWDSESGKCVYKQR-QSDSEEIDHLLAIESMSQLLLVTAE----QNLFLYDEDE--LTIVKQIVGYNDEILDMKFLGPE 335 (775)
T ss_pred EEEecccchhhhhhc-cCCchhhhcceeccccCceEEEEcc----ceEEEEEccc--cEEehhhcCCchhheeeeecCCc
Confidence 4444444320 0000 0001111111223445666655554 3588888766 222 22222222211 234567
Q ss_pred CCEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEEE-eeCCEEEEEEecCCeeEEEEEe
Q 004839 274 EGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVD-FCKTHMALILREGRTYRLCSVS 347 (728)
Q Consensus 274 g~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~~-~~~~~lv~~~~~~g~~~l~~~~ 347 (728)
.++|++.+|.+ ..++|.+ . . ..-+ +++...+ .+..++ +..+.+++...++..-.+++++
T Consensus 336 ~~~laVATNs~-------~lr~y~~--~-~---~~c~-ii~GH~e-~vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 336 ESHLAVATNSP-------ELRLYTL--P-T---SYCQ-IIPGHTE-AVLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred cceEEEEeCCC-------ceEEEec--C-C---CceE-EEeCchh-heeeeeecccCcEEEEecCCceEEEEEec
Confidence 78899999875 3677743 2 1 1122 6655443 445555 3345577777888888888884
No 397
>PLN02454 triacylglycerol lipase
Probab=82.55 E-value=1.9 Score=46.44 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHH
Q 004839 555 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAIN 594 (728)
Q Consensus 555 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~ 594 (728)
..+++.+.++.|+++.--.+-+|.+.|||+||.|+..++.
T Consensus 208 ~r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~ 247 (414)
T PLN02454 208 ARSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAF 247 (414)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHH
Confidence 4567778888888753322236999999999999998875
No 398
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=82.38 E-value=4.8 Score=42.32 Aligned_cols=58 Identities=19% Similarity=0.187 Sum_probs=36.9
Q ss_pred eEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCC--ceeccCccceeeeEEEecCCCEEEE
Q 004839 123 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSG--ALCSKPQAVRVSNIAWAKDGQALIY 185 (728)
Q Consensus 123 ~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg--~~~~~~~~~~~~~~~WspDg~~l~y 185 (728)
.+.+..++|+|+||+|.-.++ .| .++|| +..+= |.+...-...+..+.||++|.+++-
T Consensus 96 kc~V~~v~WtPeGRRLltgs~-SG--EFtLW--Ng~~fnFEtilQaHDs~Vr~m~ws~~g~wmiS 155 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQ-SG--EFTLW--NGTSFNFETILQAHDSPVRTMKWSHNGTWMIS 155 (464)
T ss_pred ccceeeEEEcCCCceeEeecc-cc--cEEEe--cCceeeHHHHhhhhcccceeEEEccCCCEEEE
Confidence 346788999999999988864 34 24444 43221 1111111346788999999987743
No 399
>PF03283 PAE: Pectinacetylesterase
Probab=82.22 E-value=2.3 Score=45.58 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHH
Q 004839 556 IKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAI 593 (728)
Q Consensus 556 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~ 593 (728)
..-+.+++++|.++++-++++|.+.|.|+||+-++.-+
T Consensus 137 ~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~ 174 (361)
T PF03283_consen 137 YRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHA 174 (361)
T ss_pred HHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHH
Confidence 34577899999999999999999999999999998754
No 400
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.18 E-value=54 Score=32.31 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=34.5
Q ss_pred eeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEE
Q 004839 126 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALI 184 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~ 184 (728)
+-....|-|...+|- -+|+ -.++++|++||+..+... ...+..+.|..++.-++
T Consensus 62 VlD~~~s~Dnskf~s---~GgD--k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~ 117 (307)
T KOG0316|consen 62 VLDAALSSDNSKFAS---CGGD--KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVA 117 (307)
T ss_pred eeecccccccccccc---CCCC--ceEEEEEcccCeeeeecccccceeeEEEecCcceEEE
Confidence 445556778876653 2333 469999999999766433 33556677776665443
No 401
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=81.99 E-value=1.1e+02 Score=35.48 Aligned_cols=144 Identities=13% Similarity=0.068 Sum_probs=77.2
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEEC-----CCCce---ec------cCccceeeeEEEecCCCEEEEEEecC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNL-----NSGAL---CS------KPQAVRVSNIAWAKDGQALIYVVTDQ 190 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl-----~tg~~---~~------~~~~~~~~~~~WspDg~~l~y~~~~~ 190 (728)
.+..++.||||+..+-.+. ..++.++|. ..|.. +. +..++.+-.+..||||+.|+..-.+.
T Consensus 456 aIWsi~~~pD~~g~vT~sa-----DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn 530 (888)
T KOG0306|consen 456 AIWSISLSPDNKGFVTGSA-----DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN 530 (888)
T ss_pred ceeeeeecCCCCceEEecC-----CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC
Confidence 6788899999998765532 123555543 22221 11 11245778899999999888775542
Q ss_pred CCCcceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCceEE-E
Q 004839 191 NKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHC-I 269 (728)
Q Consensus 191 ~~~~~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~-~ 269 (728)
.-+||..| +-+--.-+|.-.=+ ...+..|||++.|+-.+. +.+-.+|-+|..+- .+-+....+.+-+ .
T Consensus 531 ---TVkVyflD--tlKFflsLYGHkLP--V~smDIS~DSklivTgSA-DKnVKiWGLdFGDC---HKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 531 ---TVKVYFLD--TLKFFLSLYGHKLP--VLSMDISPDSKLIVTGSA-DKNVKIWGLDFGDC---HKSFFAHDDSVMSVQ 599 (888)
T ss_pred ---eEEEEEec--ceeeeeeecccccc--eeEEeccCCcCeEEeccC-CCceEEeccccchh---hhhhhcccCceeEEE
Confidence 23566554 22211223322111 245678999997654433 33456787776541 1233333333221 2
Q ss_pred EeecCCEEEEEEcCCc
Q 004839 270 VEHHEGFLYLFTDAAK 285 (728)
Q Consensus 270 ~~~dg~~l~~~tn~~~ 285 (728)
+-| ..+++|....++
T Consensus 600 F~P-~~~~FFt~gKD~ 614 (888)
T KOG0306|consen 600 FLP-KTHLFFTCGKDG 614 (888)
T ss_pred Ecc-cceeEEEecCcc
Confidence 223 455666655543
No 402
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=81.70 E-value=2.3 Score=42.40 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHh
Q 004839 557 KDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC 595 (728)
Q Consensus 557 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~ 595 (728)
.++...++.++++ -...+|.+.|||+||.++..++..
T Consensus 112 ~~~~~~~~~~~~~--~p~~~i~vtGHSLGGaiA~l~a~~ 148 (229)
T cd00519 112 NQVLPELKSALKQ--YPDYKIIVTGHSLGGALASLLALD 148 (229)
T ss_pred HHHHHHHHHHHhh--CCCceEEEEccCHHHHHHHHHHHH
Confidence 3444444444443 134689999999999999887764
No 403
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=81.17 E-value=32 Score=39.17 Aligned_cols=31 Identities=32% Similarity=0.200 Sum_probs=23.4
Q ss_pred eEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECC
Q 004839 123 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLN 158 (728)
Q Consensus 123 ~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~ 158 (728)
-+.+..+.+||||++||-. |+.|+ |+|+||.
T Consensus 459 r~G~R~~~vSp~gqhLAsG-Dr~Gn----lrVy~Lq 489 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASG-DRGGN----LRVYDLQ 489 (1080)
T ss_pred ccceEEEEECCCcceeccc-CccCc----eEEEEeh
Confidence 4467788999999999987 67775 5666654
No 404
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=81.02 E-value=68 Score=32.64 Aligned_cols=113 Identities=12% Similarity=0.119 Sum_probs=71.8
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCcee-ccCc-------cceeeeEEEec--CCCEEEEEEecCCCCc
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALC-SKPQ-------AVRVSNIAWAK--DGQALIYVVTDQNKRP 194 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~-~~~~-------~~~~~~~~Wsp--Dg~~l~y~~~~~~~~~ 194 (728)
.+.-+.|-||+.+||-..+ ..|.+++++.+..+ .... .....+-.||| ||..+.-+ .+
T Consensus 125 ~i~cvew~Pns~klasm~d------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d----- 192 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDD------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SD----- 192 (370)
T ss_pred ceeeEEEcCCCCeeEEecc------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CC-----
Confidence 4667789999999988742 24889999887642 2111 12456779999 78777665 22
Q ss_pred ceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCC
Q 004839 195 YQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 252 (728)
Q Consensus 195 ~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~ 252 (728)
..++.+|+.|....- -.+........++.+.|+.++++++..+++. |.+.|+...
T Consensus 193 ~tl~~~D~RT~~~~~-sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy--vriWD~R~t 247 (370)
T KOG1007|consen 193 STLQFWDLRTMKKNN-SIEDAHGQRVRDLDFNPNKQHILVTCGDDGY--VRIWDTRKT 247 (370)
T ss_pred CcEEEEEccchhhhc-chhhhhcceeeeccCCCCceEEEEEcCCCcc--EEEEeccCC
Confidence 257778877643211 1122222234567789999999888876554 555676553
No 405
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=80.94 E-value=25 Score=39.15 Aligned_cols=83 Identities=17% Similarity=0.214 Sum_probs=54.2
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCccceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 204 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t 204 (728)
.+...++||+.++++... .+|+ |.++|...+........-....++|.|||.-| .+.++ ..++...|++-
T Consensus 261 ~v~~ca~sp~E~kLvlGC-~DgS----iiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~-~V~s~----qGelQ~FD~AL 330 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGC-EDGS----IILYDTTRGVTLLAKAEFIPTLIAWHPDGAIF-VVGSE----QGELQCFDMAL 330 (545)
T ss_pred cceEEecCcccceEEEEe-cCCe----EEEEEcCCCeeeeeeecccceEEEEcCCCcEE-EEEcC----CceEEEEEeec
Confidence 345567899999999986 4564 89999887744333223345678999999644 44333 34788888876
Q ss_pred CC-ceeEEeeecCc
Q 004839 205 TD-EDALLLEESNE 217 (728)
Q Consensus 205 ~~-~~~lv~~~~~~ 217 (728)
.. .-.++-++..+
T Consensus 331 spi~~qLlsEd~~P 344 (545)
T PF11768_consen 331 SPIKMQLLSEDATP 344 (545)
T ss_pred CccceeeccccCCC
Confidence 65 33444444443
No 406
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=80.62 E-value=21 Score=41.30 Aligned_cols=110 Identities=16% Similarity=0.182 Sum_probs=67.8
Q ss_pred eeceeeCCCCCEEEEEEEcCCCcEEEEEEEE-CC-CCceeccCc----cceeeeEEEecCCCEEEEEEecCCCCcceeEE
Q 004839 126 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRN-LN-SGALCSKPQ----AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 199 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~d-l~-tg~~~~~~~----~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~ 199 (728)
..-.++||.++++|-. +.+|. |.|+. .. ++....-+. .+.+..+.||+||..||=. .+-..+.+
T Consensus 208 ~t~~~~spn~~~~Aa~-d~dGr----I~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSG-----G~E~VLv~ 277 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAG-DSDGR----ILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSG-----GREGVLVL 277 (792)
T ss_pred ceeEEeccccceEEEe-ccCCc----EEEEeccccccccccceEEEecccccceeEEecCCceEeec-----ccceEEEE
Confidence 4557899999999987 55664 55554 44 233222221 2367789999999866432 34456778
Q ss_pred EECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 200 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 200 ~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
+.++++. .+.+-.-.. -..++.+|||+....+... ++.|.++.+.+
T Consensus 278 Wq~~T~~-kqfLPRLgs--~I~~i~vS~ds~~~sl~~~---DNqI~li~~~d 323 (792)
T KOG1963|consen 278 WQLETGK-KQFLPRLGS--PILHIVVSPDSDLYSLVLE---DNQIHLIKASD 323 (792)
T ss_pred EeecCCC-cccccccCC--eeEEEEEcCCCCeEEEEec---CceEEEEeccc
Confidence 8888876 333322221 2356789999987665554 34666666543
No 407
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=80.59 E-value=4.6 Score=38.40 Aligned_cols=50 Identities=20% Similarity=0.192 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHhCCCceeE-EEEeCC
Q 004839 555 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRA-VVLEVP 608 (728)
Q Consensus 555 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~~p~~f~a-~v~~~p 608 (728)
.+.+|.+.++ ... ....++.++|||||..++..++.+.+..+.. ++..+|
T Consensus 93 ~L~~f~~gl~---a~~-~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~GSP 143 (177)
T PF06259_consen 93 RLARFLDGLR---ATH-GPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVGSP 143 (177)
T ss_pred HHHHHHHHhh---hhc-CCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEECCC
Confidence 3444444443 322 3557999999999999999998863433333 333444
No 408
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=80.50 E-value=72 Score=32.65 Aligned_cols=190 Identities=9% Similarity=-0.017 Sum_probs=102.6
Q ss_pred eceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCc-eeccCccc-eeeeEEEecCCCEEEEEEecCCCCcceeEEEECCC
Q 004839 127 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA-LCSKPQAV-RVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 204 (728)
Q Consensus 127 ~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~-~~~~~~~~-~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t 204 (728)
...++|- ++ +|..+.. .-|.|+|+.+-+ ++.+..-+ ......|.--|++.|.+..+ .-+..+|+.+
T Consensus 90 ~Dv~vse--~y-vyvad~s----sGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadld-----dgfLivdvsd 157 (370)
T COG5276 90 ADVRVSE--EY-VYVADWS----SGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLD-----DGFLIVDVSD 157 (370)
T ss_pred heeEecc--cE-EEEEcCC----CceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeecc-----CcEEEEECCC
Confidence 3455664 34 3444422 238999998754 22322211 24567888889988776432 3477889988
Q ss_pred CCceeEE--eeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCc-eEEEEeecCCEEEEEE
Q 004839 205 TDEDALL--LEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL-AHCIVEHHEGFLYLFT 281 (728)
Q Consensus 205 ~~~~~lv--~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~-~~~~~~~dg~~l~~~t 281 (728)
++..++. +.+++... ..+..| |++-++..... -|-++|...+. .++.+....-+ ..+.++..+++.|++.
T Consensus 158 pssP~lagrya~~~~d~-~~v~IS--Gn~AYvA~~d~---GL~ivDVSnp~-sPvli~~~n~g~g~~sv~vsdnr~y~vv 230 (370)
T COG5276 158 PSSPQLAGRYALPGGDT-HDVAIS--GNYAYVAWRDG---GLTIVDVSNPH-SPVLIGSYNTGPGTYSVSVSDNRAYLVV 230 (370)
T ss_pred CCCceeeeeeccCCCCc-eeEEEe--cCeEEEEEeCC---CeEEEEccCCC-CCeEEEEEecCCceEEEEecCCeeEEEE
Confidence 7654443 22222211 234445 55544443332 37889998864 56666554433 4566666666666554
Q ss_pred cCCccCCCCCceEEEEeeCCCCCCCCCCe-EEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEE
Q 004839 282 DAAKEGQEADNHYLLRCPVDASFPSRTWE-SVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSV 346 (728)
Q Consensus 282 n~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~ 346 (728)
-..+ |..+++. .++ ..|. -......-..+.++...+++.|+.....|.+.+-.-
T Consensus 231 y~eg---------vlivd~s-~~s-sp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idis 285 (370)
T COG5276 231 YDEG---------VLIVDVS-GPS-SPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDIS 285 (370)
T ss_pred cccc---------eEEEecC-CCC-CceEeeccccCCcccccceecccceeeeeccccCceeEecc
Confidence 3222 5566655 322 1222 111111123345567778888888877776654333
No 409
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=80.43 E-value=3.3 Score=46.39 Aligned_cols=75 Identities=13% Similarity=0.165 Sum_probs=47.1
Q ss_pred cHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccC-CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHH
Q 004839 514 WRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT-KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAA 592 (728)
Q Consensus 514 ~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~-~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~ 592 (728)
|...++.|++.||. --|.+|.. -+|+.+.... ....-+..+...++.+.+. ....+|.|+||||||.++...
T Consensus 158 w~kLIe~L~~iGY~--~~nL~gAP---YDWRls~~~le~rd~YF~rLK~lIE~ay~~--nggkKVVLV~HSMGglv~lyF 230 (642)
T PLN02517 158 WAVLIANLARIGYE--EKNMYMAA---YDWRLSFQNTEVRDQTLSRLKSNIELMVAT--NGGKKVVVVPHSMGVLYFLHF 230 (642)
T ss_pred HHHHHHHHHHcCCC--CCceeecc---cccccCccchhhhhHHHHHHHHHHHHHHHH--cCCCeEEEEEeCCchHHHHHH
Confidence 46788999999997 45666544 3555442211 1112334444555544433 224799999999999999987
Q ss_pred HHh
Q 004839 593 INC 595 (728)
Q Consensus 593 ~~~ 595 (728)
+..
T Consensus 231 L~w 233 (642)
T PLN02517 231 MKW 233 (642)
T ss_pred HHh
Confidence 763
No 410
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=80.33 E-value=64 Score=33.19 Aligned_cols=151 Identities=11% Similarity=0.042 Sum_probs=0.0
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 203 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~ 203 (728)
++..+++.|.|| ||.++..++. |..+||-.|+.-.... ......+.|+|.|.+++....+ .|-.+.++
T Consensus 129 ~Vt~lsiHPS~K-LALsVg~D~~----lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~------~i~i~q~d 197 (362)
T KOG0294|consen 129 QVTDLSIHPSGK-LALSVGGDQV----LRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN------KIDIYQLD 197 (362)
T ss_pred ccceeEecCCCc-eEEEEcCCce----eeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc------EEEEEecc
Q ss_pred CCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCc---eEEEEeecCCEEEEE
Q 004839 204 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL---AHCIVEHHEGFLYLF 280 (728)
Q Consensus 204 t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~---~~~~~~~dg~~l~~~ 280 (728)
+.. ++.+....--.....--++.+|++-..+.. +-+.|.++ ..+-........ ..+.+....+++++.
T Consensus 198 ~A~----v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~---i~~~D~ds--~~~~~~~~AH~~RVK~i~~~~~~~~~~lvT 268 (362)
T KOG0294|consen 198 NAS----VFREIENPKRILCATFLDGSELLVGGDNEW---ISLKDTDS--DTPLTEFLAHENRVKDIASYTNPEHEYLVT 268 (362)
T ss_pred cHh----HhhhhhccccceeeeecCCceEEEecCCce---EEEeccCC--CccceeeecchhheeeeEEEecCCceEEEE
Q ss_pred EcCCccCCCCCceEEEEeeCC
Q 004839 281 TDAAKEGQEADNHYLLRCPVD 301 (728)
Q Consensus 281 tn~~~~~~~~~~~~l~~~~~~ 301 (728)
...++. .+++.++.+
T Consensus 269 aSSDG~------I~vWd~~~~ 283 (362)
T KOG0294|consen 269 ASSDGF------IKVWDIDME 283 (362)
T ss_pred eccCce------EEEEEcccc
No 411
>PLN02408 phospholipase A1
Probab=80.15 E-value=2.5 Score=44.89 Aligned_cols=40 Identities=15% Similarity=-0.076 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHh
Q 004839 556 IKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC 595 (728)
Q Consensus 556 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~ 595 (728)
.+.+.+.++.++++.--.+.+|.|.|||+||.|+..++..
T Consensus 181 r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~d 220 (365)
T PLN02408 181 QEMVREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYD 220 (365)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHH
Confidence 3456677777776533234579999999999999888764
No 412
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=79.92 E-value=29 Score=37.67 Aligned_cols=103 Identities=14% Similarity=0.168 Sum_probs=48.7
Q ss_pred EEEEEEECCCCceeccCc--cce--eeeEEEecC--CCEEEEEEecCCCCcceeEEEEC-CCCC--ceeEEe-e-e---c
Q 004839 150 FTLSVRNLNSGALCSKPQ--AVR--VSNIAWAKD--GQALIYVVTDQNKRPYQIYCSII-GSTD--EDALLL-E-E---S 215 (728)
Q Consensus 150 ~~l~v~dl~tg~~~~~~~--~~~--~~~~~WspD--g~~l~y~~~~~~~~~~~v~~~~l-~t~~--~~~lv~-~-~---~ 215 (728)
.+|.|+|+.+.+.++... .+. .-.+.|..| ...=|.... ..+.||+.-- ..+. .+.++- . + .
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a----Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA----LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE------EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred CeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe----ccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 579999999998777533 221 224555544 333222221 2335554433 1221 122211 0 0 0
Q ss_pred ----C--------cceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEe
Q 004839 216 ----N--------ENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLI 259 (728)
Q Consensus 216 ----~--------~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l 259 (728)
+ +....++.+|.|.|+|+++..-. .++..+|+.++. .++.+
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~--GdvrqYDISDP~-~Pkl~ 350 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH--GDVRQYDISDPF-NPKLV 350 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTT--TEEEEEE-SSTT-S-EEE
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccC--CcEEEEecCCCC-CCcEE
Confidence 0 23456788999999999998854 478888998864 44443
No 413
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.77 E-value=67 Score=32.08 Aligned_cols=143 Identities=6% Similarity=0.004 Sum_probs=80.6
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc----cceeeeEEEecCCCEEEEEEecCCCCcceeEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 200 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~ 200 (728)
.+-+++||+....++++..-+|+ |.++|+.- ...++.. ...+.++.|.+-.+.++.+++ -...-+||.-
T Consensus 62 ~LfdV~Wse~~e~~~~~a~GDGS----Lrl~d~~~-~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS--WD~TiKLW~~ 134 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASGDGS----LRLFDLTM-PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSS--WDGTIKLWDP 134 (311)
T ss_pred ceeEeeecCCCcceEEEEecCce----EEEeccCC-CCcchhHHHhhhhheEEeccccccceeEEeec--cCCceEeecC
Confidence 35577899999999998765554 77888432 2222221 336788999998888888763 2223345544
Q ss_pred ECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecC-CceEEEEeecCCEEEE
Q 004839 201 IIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-GLAHCIVEHHEGFLYL 279 (728)
Q Consensus 201 ~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~-~~~~~~~~~dg~~l~~ 279 (728)
+.. .....|.+.... .....|||--.-++...+.+..-.+|=++..+ ++..+.... +-....+++-+..+++
T Consensus 135 ~r~---~Sv~Tf~gh~~~-Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g---k~~~i~ah~~Eil~cdw~ky~~~vl~ 207 (311)
T KOG0277|consen 135 NRP---NSVQTFNGHNSC-IYQAAFSPHIPNLFASASGDGTLRLWDVRSPG---KFMSIEAHNSEILCCDWSKYNHNVLA 207 (311)
T ss_pred CCC---cceEeecCCccE-EEEEecCCCCCCeEEEccCCceEEEEEecCCC---ceeEEEeccceeEeecccccCCcEEE
Confidence 432 233445554433 23567888776676666655555566554442 333332222 2223345555554544
Q ss_pred EE
Q 004839 280 FT 281 (728)
Q Consensus 280 ~t 281 (728)
..
T Consensus 208 Tg 209 (311)
T KOG0277|consen 208 TG 209 (311)
T ss_pred ec
Confidence 33
No 414
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=79.76 E-value=13 Score=40.68 Aligned_cols=94 Identities=11% Similarity=0.178 Sum_probs=57.5
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceec-cC-ccceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS-KP-QAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~-~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
.+..-+|||||.-|.-+ -.+| .|.++.-. |-.+. +. ....+...+|.||+..++|+.. .+++...+
T Consensus 106 A~~~gRW~~dGtgLlt~-GEDG----~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g------~h~~IKpL 173 (737)
T KOG1524|consen 106 AISSGRWSPDGAGLLTA-GEDG----VIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQG------GHISIKPL 173 (737)
T ss_pred hhhhcccCCCCceeeee-cCCc----eEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEecC------CeEEEeec
Confidence 45667899999876443 2333 47777754 43222 11 2457889999999999999853 36777666
Q ss_pred CCCCceeEEeeecCcceEEEEEEcCCCCEE
Q 004839 203 GSTDEDALLLEESNENVYVNIRHTKDFHFV 232 (728)
Q Consensus 203 ~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l 232 (728)
.... ..+-....|+ ..+.+.|++....|
T Consensus 174 ~~n~-k~i~WkAHDG-iiL~~~W~~~s~lI 201 (737)
T KOG1524|consen 174 AANS-KIIRWRAHDG-LVLSLSWSTQSNII 201 (737)
T ss_pred cccc-ceeEEeccCc-EEEEeecCccccce
Confidence 5432 2233333333 44567787766644
No 415
>PLN02571 triacylglycerol lipase
Probab=79.49 E-value=2.6 Score=45.44 Aligned_cols=41 Identities=20% Similarity=0.099 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHHh
Q 004839 555 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC 595 (728)
Q Consensus 555 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~~ 595 (728)
..+++.+.++.|+++---..-+|.+.|||+||.||..++..
T Consensus 206 ar~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 206 ARDQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 35677788888876532222379999999999999887763
No 416
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=79.48 E-value=16 Score=30.26 Aligned_cols=52 Identities=12% Similarity=0.001 Sum_probs=35.7
Q ss_pred EEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCC
Q 004839 149 YFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 204 (728)
Q Consensus 149 ~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t 204 (728)
.-.|..+|++|++...+.. ..-..+++.|+|++.|+++... ..+|.++.|..
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~----~~Ri~rywl~G 88 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG----RYRILRYWLKG 88 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG----GTEEEEEESSS
T ss_pred CcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc----CceEEEEEEeC
Confidence 3468899999988644322 2345679999999999887542 45788888753
No 417
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=79.22 E-value=1e+02 Score=33.59 Aligned_cols=113 Identities=11% Similarity=0.042 Sum_probs=68.1
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
.+.+..|-.||+++|.. |..| .+.|+|.++...++... ...+....|+|++..++.+..|+. .+-..|+
T Consensus 70 ~v~s~~fR~DG~LlaaG-D~sG----~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~----v~k~~d~ 140 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAAG-DESG----HVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDK----VVKYWDL 140 (487)
T ss_pred ceeEEEeecCCeEEEcc-CCcC----cEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCc----eEEEEEc
Confidence 35566788999999876 5555 48899976643333221 234566789999998887765532 2333455
Q ss_pred CCCCceeEEeeecCc-ceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 203 GSTDEDALLLEESNE-NVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 203 ~t~~~~~lv~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
.+.. . ..+..+. .+.-..+++|-...|+++..-++. |.+.|+..
T Consensus 141 s~a~--v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~--vrl~DtR~ 185 (487)
T KOG0310|consen 141 STAY--V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGK--VRLWDTRS 185 (487)
T ss_pred CCcE--E-EEEecCCcceeEeeccccCCCeEEEecCCCce--EEEEEecc
Confidence 4432 2 2222222 233346789988888888765544 44445443
No 418
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=78.83 E-value=7.4 Score=39.72 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=47.7
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc----cceeeeEEEecCCCEEEEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAKDGQALIYVV 187 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg~~l~y~~ 187 (728)
.++-++++-+|..||-.+ ..| .-|+|+|..+|+.+.... ...+..++||||+.+|+..+
T Consensus 183 ~Iacv~Ln~~Gt~vATaS-tkG---TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS 245 (346)
T KOG2111|consen 183 DIACVALNLQGTLVATAS-TKG---TLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS 245 (346)
T ss_pred ceeEEEEcCCccEEEEec-cCc---EEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc
Confidence 677889999999999875 566 359999999998776543 33678899999999988774
No 419
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=78.36 E-value=1e+02 Score=33.15 Aligned_cols=196 Identities=13% Similarity=0.096 Sum_probs=86.1
Q ss_pred CEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cc---eeeeEEEecCCCE--EEEEEecCC-CCcceeEEEECCCCC-
Q 004839 136 KFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AV---RVSNIAWAKDGQA--LIYVVTDQN-KRPYQIYCSIIGSTD- 206 (728)
Q Consensus 136 ~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~---~~~~~~WspDg~~--l~y~~~~~~-~~~~~v~~~~l~t~~- 206 (728)
+.+.+..+..+. |+|+||++.+...+.. .+ ....+.+ +|+. |+..+.... ...-++|.++-.++.
T Consensus 68 kSlIigTdK~~G----L~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L 141 (381)
T PF02333_consen 68 KSLIIGTDKKGG----LYVYDLDGKELQSLPVGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL 141 (381)
T ss_dssp G-EEEEEETTTE----EEEEETTS-EEEEE-SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred cceEEEEeCCCC----EEEEcCCCcEEEeecCCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence 445555566653 9999998776544432 11 2233444 5665 444443322 123467777743332
Q ss_pred ce-----eEEeeecCcceEEEEEEcC-CCCEEEEEEcCCCceEEEEEeCCCCCCCe-----EEeeecCCceEEEEeecCC
Q 004839 207 ED-----ALLLEESNENVYVNIRHTK-DFHFVCVHTFSTTSSKVFLINAADPFSGL-----TLIWECEGLAHCIVEHHEG 275 (728)
Q Consensus 207 ~~-----~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~-----~~l~~~~~~~~~~~~~dg~ 275 (728)
.. ..+.......+-+.+..++ +|+..+|.....+.-+-|.+..... +.+ +.+.-......+.++...+
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~-g~v~~~lVR~f~~~sQ~EGCVVDDe~g 220 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGD-GKVSATLVREFKVGSQPEGCVVDDETG 220 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TT-SSEEEEEEEEEE-SS-EEEEEEETTTT
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCC-CcEeeEEEEEecCCCcceEEEEecccC
Confidence 10 0011111222333444554 6776666666555556666654321 221 2222222222345555566
Q ss_pred EEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEe-ecC---CCceEEEEEee---CCEEEEEEecCCeeEEEEEec
Q 004839 276 FLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVF-IDD---QGLVVEDVDFC---KTHMALILREGRTYRLCSVSL 348 (728)
Q Consensus 276 ~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li-~~~---~~~~i~~~~~~---~~~lv~~~~~~g~~~l~~~~l 348 (728)
.||+- .++ .-|++++.+ |+...-..++ ... -...++++.+. ++.=|++....|.....+++.
T Consensus 221 ~LYvg-EE~--------~GIW~y~Ae--p~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 221 RLYVG-EED--------VGIWRYDAE--PEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp EEEEE-ETT--------TEEEEEESS--CCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred CEEEe-cCc--------cEEEEEecC--CCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 77774 333 348888765 2222212233 211 12468888876 223344444445555666664
Q ss_pred C
Q 004839 349 P 349 (728)
Q Consensus 349 ~ 349 (728)
.
T Consensus 290 ~ 290 (381)
T PF02333_consen 290 E 290 (381)
T ss_dssp S
T ss_pred C
Confidence 3
No 420
>PRK13613 lipoprotein LpqB; Provisional
Probab=78.36 E-value=1.4e+02 Score=34.57 Aligned_cols=123 Identities=10% Similarity=0.000 Sum_probs=70.6
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc---cc-eeeeEEEecCCCEEEEEEecCCCCcceeEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AV-RVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 200 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~-~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~ 200 (728)
.+..|+|.++| + +++.+...+....|++..- +|+...+.. .+ .+..+.-|+||-+++....... ..+|+.-
T Consensus 410 ~Lt~PS~d~~g-~-vWtvd~~~~~~~vl~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g--~~~v~va 484 (599)
T PRK13613 410 RLTSPSWDGRG-D-LWVVDRDPADPRLLWLLQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDG--RRSLQIG 484 (599)
T ss_pred cccCCcCcCCC-C-EEEecCCCCCceEEEEEcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCC--CcEEEEE
Confidence 47788999998 3 5666543232233566554 566543322 22 6889999999999998865322 2356554
Q ss_pred ECCCCC--ceeEEe-e--ecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCC
Q 004839 201 IIGSTD--EDALLL-E--ESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 252 (728)
Q Consensus 201 ~l~t~~--~~~lv~-~--~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~ 252 (728)
.+.... ...+.. . ...-.-..++.|..++..+++.....+...+|++++++.
T Consensus 485 ~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~ 541 (599)
T PRK13613 485 RIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDSQLVVLGREEGGVQQARYVQVDGS 541 (599)
T ss_pred EEEeCCCCcEEeeccEEeccCCCccceeEEcCCCEEEEEeccCCCCcceEEEecCCc
Confidence 442211 111110 0 001111357889988875554444444577999999864
No 421
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=78.34 E-value=66 Score=36.85 Aligned_cols=112 Identities=7% Similarity=0.043 Sum_probs=64.9
Q ss_pred EEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCce-eccCc---cceeeeEEEecCCCEEEEEEecCCCCcceeEE
Q 004839 124 AYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL-CSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 199 (728)
Q Consensus 124 ~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~-~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~ 199 (728)
+.=+.++||++|++|+-.. |+ .|-+.|+++|.. ++... .+....++-+||++.|++.. |...+-.
T Consensus 20 YtGG~~~~s~nG~~L~t~~---~d---~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~-----rs~llrv 88 (775)
T KOG0319|consen 20 YTGGPVAWSSNGQHLYTAC---GD---RVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTAS-----RSQLLRV 88 (775)
T ss_pred ecCCceeECCCCCEEEEec---Cc---eEEEEEccCCceecccCCccchhhhheeeecCCccEEEEee-----ccceEEE
Confidence 3344578999999886553 22 388899999987 43322 33668899999988777653 2334455
Q ss_pred EECCCCC-ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 200 SIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 200 ~~l~t~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
+.+.++. .+........+ .+..+++|.| .|+-+.. ....+-+.|...
T Consensus 89 ~~L~tgk~irswKa~He~P--vi~ma~~~~g-~LlAtgg--aD~~v~VWdi~~ 136 (775)
T KOG0319|consen 89 WSLPTGKLIRSWKAIHEAP--VITMAFDPTG-TLLATGG--ADGRVKVWDIKN 136 (775)
T ss_pred EEcccchHhHhHhhccCCC--eEEEEEcCCC-ceEEecc--ccceEEEEEeeC
Confidence 5666554 22211101111 2345678888 3333222 234455666654
No 422
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=77.81 E-value=73 Score=33.65 Aligned_cols=80 Identities=20% Similarity=0.100 Sum_probs=48.5
Q ss_pred EeeceeeCCCCCEEEEEEEcC----CCc-------EEEEEEEECCC-Cce-----eccC------ccceeeeEEEecCCC
Q 004839 125 YEELSEVSPDHKFLAYTMYDK----DND-------YFTLSVRNLNS-GAL-----CSKP------QAVRVSNIAWAKDGQ 181 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~----g~e-------~~~l~v~dl~t-g~~-----~~~~------~~~~~~~~~WspDg~ 181 (728)
.+..+.++|||+.|....... +.. ...|+.+|.++ |+. .++. ....++.+.+.+|++
T Consensus 148 G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~ 227 (326)
T PF13449_consen 148 GFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR 227 (326)
T ss_pred CeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc
Confidence 467788999999655443221 211 25677888876 321 1121 123678899999999
Q ss_pred EEEEEEecCC--CCcceeEEEECCC
Q 004839 182 ALIYVVTDQN--KRPYQIYCSIIGS 204 (728)
Q Consensus 182 ~l~y~~~~~~--~~~~~v~~~~l~t 204 (728)
.|+.-+.... ....+||.+++..
T Consensus 228 lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 228 LLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred EEEEEccCCCCccceEEEEEEEccc
Confidence 6655543221 2345799998754
No 423
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.68 E-value=3 Score=47.75 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHc--C--CCC---CCcEEEEEeCccHHHHHHHHHhCCCceeEEE
Q 004839 558 DFISCARFLIEK--E--IVK---EHKLAGWGYSAGGLLVAAAINCCPDLFRAVV 604 (728)
Q Consensus 558 D~~~~~~~l~~~--~--~~d---~~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v 604 (728)
=+.+|+++..+. + .-+ |..|++.||||||..+-++++ +|+..+..|
T Consensus 158 YV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~t-lkn~~~~sV 210 (973)
T KOG3724|consen 158 YVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLT-LKNEVQGSV 210 (973)
T ss_pred HHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHh-hhhhccchh
Confidence 345677776653 2 223 677999999999999988888 476555444
No 424
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=77.51 E-value=82 Score=33.22 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=64.2
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCC------ceeccCc---cceeeeEEEecCCCEEEEEEecCCCCcc
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSG------ALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPY 195 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg------~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~ 195 (728)
.+..++||.+|++||-. ++..+..||+++.- +++.+.. ..++..++|.-.+ +++|+- .+..
T Consensus 58 CiNAlqFS~N~~~L~SG-----GDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG----~~~~ 127 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASG-----GDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-RFLYSG----ERWG 127 (609)
T ss_pred ccceeeeccCCeEEeec-----CCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-eeEecC----CCcc
Confidence 67889999999988643 23456777876542 2222211 1356677886654 455642 4556
Q ss_pred eeEEEECCCCCceeEEeeecCc-ceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 196 QIYCSIIGSTDEDALLLEESNE-NVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 196 ~v~~~~l~t~~~~~lv~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
+|..||+.+.+ ..-|+.+.+. ....+...+|-...++..+..+ .|.++|...
T Consensus 128 ~VI~HDiEt~q-si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~---~V~~~D~Rd 180 (609)
T KOG4227|consen 128 TVIKHDIETKQ-SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAK---LVSFIDNRD 180 (609)
T ss_pred eeEeeecccce-eeeeecccCcccceeecccCCCCceEEEEecCc---eEEEEeccC
Confidence 89999999875 3334544431 1122345566655444433322 355566544
No 425
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=76.71 E-value=16 Score=40.08 Aligned_cols=100 Identities=19% Similarity=0.109 Sum_probs=55.6
Q ss_pred CCCccEEEEEcCCCCCCcCcccH-----------------HHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCc
Q 004839 493 ENQNPGLLHGHGAYGELLDKRWR-----------------SELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNS 555 (728)
Q Consensus 493 ~~~~P~vv~~hGg~~~~~~~~~~-----------------~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~ 555 (728)
..+.|++++..||||.+...... ..-..|.+. -.++..|.+=++||.++-...... .....
T Consensus 98 p~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~-adLvFiDqPvGTGfS~a~~~e~~~-d~~~~ 175 (498)
T COG2939 98 PANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDF-ADLVFIDQPVGTGFSRALGDEKKK-DFEGA 175 (498)
T ss_pred CCCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccC-CceEEEecCcccCccccccccccc-chhcc
Confidence 34679999999999854321110 011233343 346778866666665541111222 22234
Q ss_pred HHHHHHHHHHHHHc-CCC--CCCcEEEEEeCccHHHHHHHHH
Q 004839 556 IKDFISCARFLIEK-EIV--KEHKLAGWGYSAGGLLVAAAIN 594 (728)
Q Consensus 556 ~~D~~~~~~~l~~~-~~~--d~~ri~i~G~S~GG~~~~~~~~ 594 (728)
-.|+....+.+.+. ... .-.+..|.|-||||.-+..+|.
T Consensus 176 ~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~ 217 (498)
T COG2939 176 GKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAH 217 (498)
T ss_pred chhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHH
Confidence 45666655554432 111 1247899999999987776653
No 426
>PLN02324 triacylglycerol lipase
Probab=76.28 E-value=3.6 Score=44.33 Aligned_cols=40 Identities=15% Similarity=0.077 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHH
Q 004839 555 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAIN 594 (728)
Q Consensus 555 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~ 594 (728)
..+.+.+.++.|+++.--..-+|.+.|||+||.|+..++.
T Consensus 195 areqVl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~ 234 (415)
T PLN02324 195 AQEQVQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAA 234 (415)
T ss_pred HHHHHHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHH
Confidence 3455667788888753222247999999999999988875
No 427
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=76.24 E-value=40 Score=35.47 Aligned_cols=117 Identities=11% Similarity=0.068 Sum_probs=69.7
Q ss_pred EEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceec---cCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEE
Q 004839 124 AYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS---KPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 199 (728)
Q Consensus 124 ~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~---~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~ 199 (728)
.++..++|||..+-+.++...+|+ |.|+|+.++.... ... ...+..+.|+-+-..|+.. .|+ ...+||-
T Consensus 258 ~SVEDLqWSptE~~vfaScS~Dgs----IrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG-~Dd--Gt~~iwD 330 (440)
T KOG0302|consen 258 KSVEDLQWSPTEDGVFASCSCDGS----IRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASG-GDD--GTLSIWD 330 (440)
T ss_pred cchhhhccCCccCceEEeeecCce----EEEEEecCCCccceeEeeccCCceeeEEccCCcceeeec-CCC--ceEEEEE
Confidence 478899999999999888888776 9999999884222 112 3456778998876633332 221 2223443
Q ss_pred EECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCC
Q 004839 200 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAA 250 (728)
Q Consensus 200 ~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~ 250 (728)
++.-+....+..|.-.... ..++.|+|....++..+..+ ++|-+.|++
T Consensus 331 LR~~~~~~pVA~fk~Hk~p-ItsieW~p~e~s~iaasg~D--~QitiWDls 378 (440)
T KOG0302|consen 331 LRQFKSGQPVATFKYHKAP-ITSIEWHPHEDSVIAASGED--NQITIWDLS 378 (440)
T ss_pred hhhccCCCcceeEEeccCC-eeEEEeccccCceEEeccCC--CcEEEEEee
Confidence 3222222222233322222 35789999887776655543 445555554
No 428
>PLN02802 triacylglycerol lipase
Probab=75.76 E-value=3.8 Score=45.15 Aligned_cols=39 Identities=23% Similarity=0.185 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHH
Q 004839 556 IKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAIN 594 (728)
Q Consensus 556 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~ 594 (728)
-+++.+.++.|+++.--..-+|.|.|||+||.++..++.
T Consensus 311 reqVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~ 349 (509)
T PLN02802 311 SESVVGEVRRLMEKYKGEELSITVTGHSLGAALALLVAD 349 (509)
T ss_pred HHHHHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHH
Confidence 356677778777653222247999999999999988765
No 429
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=74.26 E-value=41 Score=36.04 Aligned_cols=116 Identities=9% Similarity=0.034 Sum_probs=73.4
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCc--eeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA--LCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 200 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~--~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~ 200 (728)
.+...+|.|-...|--++..+ ..|.|+|+.+++ ...... ...+..++|.|=+..|+-+..- ...|.+.
T Consensus 229 ~VeDV~~h~~h~~lF~sv~dd----~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~----D~tV~Lw 300 (422)
T KOG0264|consen 229 VVEDVAWHPLHEDLFGSVGDD----GKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA----DKTVALW 300 (422)
T ss_pred ceehhhccccchhhheeecCC----CeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccC----CCcEEEe
Confidence 567888999887775444333 348999999642 111111 3356788999988888777542 2367777
Q ss_pred ECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 201 IIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 201 ~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
|+..-....-.++..++. ...+.|||+..-|+.++.. ...+.+.|+..
T Consensus 301 DlRnL~~~lh~~e~H~de-v~~V~WSPh~etvLASSg~--D~rl~vWDls~ 348 (422)
T KOG0264|consen 301 DLRNLNKPLHTFEGHEDE-VFQVEWSPHNETVLASSGT--DRRLNVWDLSR 348 (422)
T ss_pred echhcccCceeccCCCcc-eEEEEeCCCCCceeEeccc--CCcEEEEeccc
Confidence 776543333344444433 3568999999988766653 45566777754
No 430
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.05 E-value=7.7 Score=38.62 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=26.3
Q ss_pred CcEEEEEeCccHHHHHHHHHhCCCceeEEEEeCCcccch
Q 004839 575 HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDAT 613 (728)
Q Consensus 575 ~ri~i~G~S~GG~~~~~~~~~~p~~f~a~v~~~p~~d~~ 613 (728)
.+++|.|.||||.++..+...++.- |+.+|++++.
T Consensus 195 g~~~~~g~Smgg~~a~~vgS~~q~P----va~~p~l~~~ 229 (371)
T KOG1551|consen 195 GNLNLVGRSMGGDIANQVGSLHQKP----VATAPCLNSS 229 (371)
T ss_pred ccceeeeeecccHHHHhhcccCCCC----cccccccccc
Confidence 5899999999999999988855533 4455665554
No 431
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=73.60 E-value=7.6 Score=40.30 Aligned_cols=115 Identities=10% Similarity=0.135 Sum_probs=68.2
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCc-eeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA-LCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 201 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~-~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~ 201 (728)
.-..++|+|. ||.. ..++|.+.||..|...-+ ++.+.. ...+-++++||-|+-|+-.++|.. |.++.
T Consensus 231 RTN~IswnPe----afnF-~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks-----IRIf~ 300 (433)
T KOG0268|consen 231 RTNTICWNPE----AFNF-VAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS-----IRIFP 300 (433)
T ss_pred cccceecCcc----ccce-eeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce-----EEEee
Confidence 3456889993 3432 346778899999975432 222211 235677899999998877666532 33334
Q ss_pred CCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 202 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 202 l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
+..+. .+-+|....-.....+.||-|.+||+ +.+++..-.+|...+..
T Consensus 301 ~~~~~-SRdiYhtkRMq~V~~Vk~S~Dskyi~-SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 301 VNHGH-SRDIYHTKRMQHVFCVKYSMDSKYII-SGSDDGNVRLWKAKASE 348 (433)
T ss_pred cCCCc-chhhhhHhhhheeeEEEEeccccEEE-ecCCCcceeeeecchhh
Confidence 43332 22344433333445789999999975 33333445677776653
No 432
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=72.21 E-value=1e+02 Score=30.23 Aligned_cols=217 Identities=13% Similarity=0.031 Sum_probs=96.9
Q ss_pred EEEEEECCCCceeccCc-cceeeeEE--EecCCCEEEEEEecCCCCcceeEEEECCCCCceeEEeeecCcceEEEEEEcC
Q 004839 151 TLSVRNLNSGALCSKPQ-AVRVSNIA--WAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTK 227 (728)
Q Consensus 151 ~l~v~dl~tg~~~~~~~-~~~~~~~~--WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~Sp 227 (728)
+|..+|+.+|+.+-... ........ -.+++..+|... ....|+.+|+.+++. ..-+..... +...+ ..
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~l~~~d~~tG~~-~W~~~~~~~-~~~~~--~~ 74 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS-----GDGNLYALDAKTGKV-LWRFDLPGP-ISGAP--VV 74 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE-----TTSEEEEEETTTSEE-EEEEECSSC-GGSGE--EE
T ss_pred EEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc-----CCCEEEEEECCCCCE-EEEeecccc-cccee--ee
Confidence 46777777776543221 11122222 333566676652 245899999888742 111222111 11112 12
Q ss_pred CCCEEEEEEcCCCceEEEEEeCCCCCCCeE-EeeecC-Cc--eEEEEeecCCEEEEEEcCCccCCCCCceEEEEeeCCCC
Q 004839 228 DFHFVCVHTFSTTSSKVFLINAADPFSGLT-LIWECE-GL--AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDAS 303 (728)
Q Consensus 228 Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~-~l~~~~-~~--~~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~~~ 303 (728)
++..|++...+ ..|+.+|+.+++...+ ...... .. .......+++.+++.... ..|+.++.. +
T Consensus 75 ~~~~v~v~~~~---~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g~l~~~d~~-t 141 (238)
T PF13360_consen 75 DGGRVYVGTSD---GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS---------GKLVALDPK-T 141 (238)
T ss_dssp ETTEEEEEETT---SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC---------SEEEEEETT-T
T ss_pred cccccccccce---eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc---------CcEEEEecC-C
Confidence 34445555422 3799999888543233 121111 11 111222347777776542 246677654 2
Q ss_pred CCCCCCeEEeecCCC-ce-------EEEEEeeCCEEEEEEecCCeeEEEEEecCCCCCCcceeecccccccccCCCceee
Q 004839 304 FPSRTWESVFIDDQG-LV-------VEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQ 375 (728)
Q Consensus 304 ~~~~~~~~li~~~~~-~~-------i~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~ 375 (728)
+...|+.-+..... .. .....+.++.+++. ..++. +..+++.+++ ..+ ..+ +.....
T Consensus 142 -G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~g~--~~~~d~~tg~----~~w------~~~-~~~~~~ 206 (238)
T PF13360_consen 142 -GKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVS-SGDGR--VVAVDLATGE----KLW------SKP-ISGIYS 206 (238)
T ss_dssp -TEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEE-CCTSS--EEEEETTTTE----EEE------EEC-SS-ECE
T ss_pred -CcEEEEeecCCCCCCcceeeecccccceEEECCEEEEE-cCCCe--EEEEECCCCC----EEE------Eec-CCCccC
Confidence 12234432211111 11 12333344544443 44443 4445766542 111 111 111111
Q ss_pred eecCCCccCCCcEEEEEEccCCCCceEEEEECCCCeEE
Q 004839 376 IVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWN 413 (728)
Q Consensus 376 i~~~~~~~~~~~~~~~~~ss~~~p~~~~~~~~~~~~~~ 413 (728)
+ ...+++.+.+. +. -..++.+|+++|+..
T Consensus 207 ~-----~~~~~~~l~~~-~~---~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 207 L-----PSVDGGTLYVT-SS---DGRLYALDLKTGKVV 235 (238)
T ss_dssp C-----EECCCTEEEEE-ET---TTEEEEEETTTTEEE
T ss_pred C-----ceeeCCEEEEE-eC---CCEEEEEECCCCCEE
Confidence 0 12344545433 32 379999999999753
No 433
>KOG4328 consensus WD40 protein [Function unknown]
Probab=72.02 E-value=37 Score=36.55 Aligned_cols=139 Identities=6% Similarity=0.080 Sum_probs=83.5
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccC----ccceeeeEEEecCCCEEEEEEecCCCCcceeEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP----QAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 200 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~----~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~ 200 (728)
.++.+.+||-..--.|+...+|. |+..|++++....+. ..-.++.+.++.+...+++...- ....++-+
T Consensus 236 ~Vs~l~F~P~n~s~i~ssSyDGt----iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~---G~f~~iD~ 308 (498)
T KOG4328|consen 236 PVSGLKFSPANTSQIYSSSYDGT----IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNV---GNFNVIDL 308 (498)
T ss_pred cccceEecCCChhheeeeccCce----eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecc---cceEEEEe
Confidence 68889999988888888888885 999999987532221 22356778899888888776421 13345544
Q ss_pred ECCCCC-ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC--CCCCe--EEeeecCCceEEEEeecCC
Q 004839 201 IIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD--PFSGL--TLIWECEGLAHCIVEHHEG 275 (728)
Q Consensus 201 ~l~t~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~--~~~~~--~~l~~~~~~~~~~~~~dg~ 275 (728)
+.+... +...+ .+. -..++.+.|-..+++.++.-+.+-.|| |+.. ++..+ ..+..+......+++|.++
T Consensus 309 R~~~s~~~~~~l-h~k---KI~sv~~NP~~p~~laT~s~D~T~kIW--D~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g 382 (498)
T KOG4328|consen 309 RTDGSEYENLRL-HKK---KITSVALNPVCPWFLATASLDQTAKIW--DLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG 382 (498)
T ss_pred ecCCccchhhhh-hhc---ccceeecCCCCchheeecccCcceeee--ehhhhcCCCCcceecccccceeeeeEEcCCCC
Confidence 443322 11112 111 234577889888888887766555565 4322 12222 1122223334457788888
Q ss_pred E
Q 004839 276 F 276 (728)
Q Consensus 276 ~ 276 (728)
.
T Consensus 383 t 383 (498)
T KOG4328|consen 383 T 383 (498)
T ss_pred c
Confidence 8
No 434
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=71.60 E-value=1.3e+02 Score=31.18 Aligned_cols=138 Identities=11% Similarity=0.090 Sum_probs=70.2
Q ss_pred CCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-------cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCC
Q 004839 132 SPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-------AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 204 (728)
Q Consensus 132 SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-------~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t 204 (728)
-|+-.++|.++ +... |.++|.-+|+.+.-.. ......+.|+|||..||-. .. + -|...++..
T Consensus 120 qP~t~l~a~ss-r~~P----Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-yk---r--cirvFdt~R 188 (406)
T KOG2919|consen 120 QPSTNLFAVSS-RDQP----IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YK---R--CIRVFDTSR 188 (406)
T ss_pred CCccceeeecc-ccCc----eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-cc---c--eEEEeeccC
Confidence 58888888775 3322 9999999998665321 1245678999999999754 21 1 244444422
Q ss_pred CCcee----EEee--ecCcceEEEEEEcCCCC-EEEEEEcCCCceEEEEEeCCCCCCCeEEeeecCCceE-EEEeecCCE
Q 004839 205 TDEDA----LLLE--ESNENVYVNIRHTKDFH-FVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAH-CIVEHHEGF 276 (728)
Q Consensus 205 ~~~~~----lv~~--~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~-~~~~~dg~~ 276 (728)
+..+- .++. ........-+++||-.. -+.+.+.. ....||.-| + ......+....+++. ..+-+||.+
T Consensus 189 pGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~-q~~giy~~~--~-~~pl~llggh~gGvThL~~~edGn~ 264 (406)
T KOG2919|consen 189 PGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG-QRVGIYNDD--G-RRPLQLLGGHGGGVTHLQWCEDGNK 264 (406)
T ss_pred CCCCCcchhhhhcccccccceeeeeeccCCCCcceeeeccc-ceeeeEecC--C-CCceeeecccCCCeeeEEeccCcCe
Confidence 21111 1111 11111223356676443 44443332 123344333 2 123445554445533 344567888
Q ss_pred EEEEEcCC
Q 004839 277 LYLFTDAA 284 (728)
Q Consensus 277 l~~~tn~~ 284 (728)
||.-+..+
T Consensus 265 lfsGaRk~ 272 (406)
T KOG2919|consen 265 LFSGARKD 272 (406)
T ss_pred ecccccCC
Confidence 77654443
No 435
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=71.30 E-value=8.1 Score=41.96 Aligned_cols=77 Identities=21% Similarity=0.332 Sum_probs=46.5
Q ss_pred ccHHHHHHHHHCCeEEEEEcCCCCC--CCCCccccccccCCCCCcHHHHHHHHHHHHHc--CCCCCCcEEEEEeCccHHH
Q 004839 513 RWRSELKSLLDRGWVVAFADVRGGG--GGGKKWHHDGRRTKKLNSIKDFISCARFLIEK--EIVKEHKLAGWGYSAGGLL 588 (728)
Q Consensus 513 ~~~~~~~~l~~~Gy~v~~~d~RG~g--~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--~~~d~~ri~i~G~S~GG~~ 588 (728)
.|...++.|+.-||. ||-. +.+-+|+.+- ...+..+....-++.+++. ..-.-++|.+++|||||.+
T Consensus 125 ~w~~~i~~lv~~GYe------~~~~l~ga~YDwRls~---~~~e~rd~yl~kLK~~iE~~~~~~G~kkVvlisHSMG~l~ 195 (473)
T KOG2369|consen 125 YWHELIENLVGIGYE------RGKTLFGAPYDWRLSY---HNSEERDQYLSKLKKKIETMYKLNGGKKVVLISHSMGGLY 195 (473)
T ss_pred HHHHHHHHHHhhCcc------cCceeeccccchhhcc---CChhHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCccHH
Confidence 356677889988886 2222 2233444421 1122334444444444443 1223389999999999999
Q ss_pred HHHHHHhCCC
Q 004839 589 VAAAINCCPD 598 (728)
Q Consensus 589 ~~~~~~~~p~ 598 (728)
+...+..+++
T Consensus 196 ~lyFl~w~~~ 205 (473)
T KOG2369|consen 196 VLYFLKWVEA 205 (473)
T ss_pred HHHHHhcccc
Confidence 9999987776
No 436
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=71.09 E-value=1.3e+02 Score=30.89 Aligned_cols=115 Identities=7% Similarity=0.002 Sum_probs=67.1
Q ss_pred EEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEE
Q 004839 124 AYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 201 (728)
Q Consensus 124 ~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~ 201 (728)
+++..+.|..++..+.-. -. ..+|.++|+..++.+-... .+.+..+.-|++|..|.-...+ ..|.+.|
T Consensus 175 yqltAv~f~d~s~qv~sg-gI----dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd-----~tvrvwd 244 (338)
T KOG0265|consen 175 YQLTAVGFKDTSDQVISG-GI----DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMD-----NTVRVWD 244 (338)
T ss_pred eeEEEEEecccccceeec-cc----cCceeeeccccCcceEEeecccCceeeEEeccCCCcccccccc-----ceEEEEE
Confidence 355556666665544221 11 2347888887666554332 4567788888988866543332 2344444
Q ss_pred CC--CCCce-eEEeeecCcce---EEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 202 IG--STDED-ALLLEESNENV---YVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 202 l~--t~~~~-~lv~~~~~~~~---~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
+. -++++ ..+|+...-.| .+..+|||+++++.+-+.+ .-+|+.|...
T Consensus 245 ~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~d---r~vyvwd~~~ 297 (338)
T KOG0265|consen 245 VRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSAD---RFVYVWDTTS 297 (338)
T ss_pred ecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccccccc---ceEEEeeccc
Confidence 42 33333 55666544333 2567999999998655543 3588888765
No 437
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=71.08 E-value=1.6e+02 Score=32.98 Aligned_cols=31 Identities=26% Similarity=0.241 Sum_probs=23.0
Q ss_pred eeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCC
Q 004839 126 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSG 160 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg 160 (728)
-..+.+||||+||.-+ |.-..+|.++|++.=
T Consensus 54 st~ik~s~DGqY~lAt----G~YKP~ikvydlanL 84 (703)
T KOG2321|consen 54 STRIKVSPDGQYLLAT----GTYKPQIKVYDLANL 84 (703)
T ss_pred cceeEecCCCcEEEEe----cccCCceEEEEcccc
Confidence 3467899999988654 444567999998763
No 438
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=70.90 E-value=29 Score=36.82 Aligned_cols=102 Identities=11% Similarity=0.037 Sum_probs=57.0
Q ss_pred ceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCcc--c----eeeeEEEecCCCEEEEEEecCC----------
Q 004839 128 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQA--V----RVSNIAWAKDGQALIYVVTDQN---------- 191 (728)
Q Consensus 128 ~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~--~----~~~~~~WspDg~~l~y~~~~~~---------- 191 (728)
++++...|.-|.. .|. ..-|++++.++|....++.. + -...+...++| .|||+.+...
T Consensus 119 Gl~f~~~ggdL~V-aDA----YlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g-~vyFTDSSsk~~~rd~~~a~ 192 (376)
T KOG1520|consen 119 GIRFDKKGGDLYV-ADA----YLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEG-VVYFTDSSSKYDRRDFVFAA 192 (376)
T ss_pred eEEeccCCCeEEE-Eec----ceeeEEECCCCCcceeccccccCeeeeecCceeEcCCC-eEEEeccccccchhheEEee
Confidence 4456666644433 231 34478888888875554431 1 12445666644 5777643221
Q ss_pred ---CCcceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcC
Q 004839 192 ---KRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFS 238 (728)
Q Consensus 192 ---~~~~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~ 238 (728)
....+++++|..+....+++ + +-.|-.++++|||+.++++....
T Consensus 193 l~g~~~GRl~~YD~~tK~~~VLl-d--~L~F~NGlaLS~d~sfvl~~Et~ 239 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDPSTKVTKVLL-D--GLYFPNGLALSPDGSFVLVAETT 239 (376)
T ss_pred ecCCCccceEEecCcccchhhhh-h--cccccccccCCCCCCEEEEEeec
Confidence 12346777776654332222 1 12344578999999998887654
No 439
>PHA03098 kelch-like protein; Provisional
Probab=70.00 E-value=2e+02 Score=32.66 Aligned_cols=191 Identities=5% Similarity=-0.109 Sum_probs=87.2
Q ss_pred EEEEEEECCCCceeccCc-c-ceeeeEEEecCCCEEEEEE-ecCCCCcceeEEEECCCCCceeEEeeecCcceEEEEEEc
Q 004839 150 FTLSVRNLNSGALCSKPQ-A-VRVSNIAWAKDGQALIYVV-TDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHT 226 (728)
Q Consensus 150 ~~l~v~dl~tg~~~~~~~-~-~~~~~~~WspDg~~l~y~~-~~~~~~~~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~S 226 (728)
.+++.+|+.+++...... . .+...-.-.-+++ ||..- .+.......++++|..+..-.. +-.-+.+....... .
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~-lyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~lp~~r~~~~~~-~ 387 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNR-IYVIGGIYNSISLNTVESWKPGESKWRE-EPPLIFPRYNPCVV-N 387 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcccccceEEEECCE-EEEEeCCCCCEecceEEEEcCCCCceee-CCCcCcCCccceEE-E
Confidence 368999999988765543 1 1211112223444 54432 2211223468888887654111 10111122222222 2
Q ss_pred CCCCEEEEEEc-CC---CceEEEEEeCCCCCCCeEEeeecCCce-EEEEeecCCEEEEEEcCCccCCCCCceEEEEeeCC
Q 004839 227 KDFHFVCVHTF-ST---TSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVD 301 (728)
Q Consensus 227 pDg~~l~~~~~-~~---~~~~l~~~dl~~~~~~~~~l~~~~~~~-~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~ 301 (728)
-+|+ |++... .. ..+.++.+|+.+ ..+..+.+..... .......++.+|++.-.........-..++..+..
T Consensus 388 ~~~~-iYv~GG~~~~~~~~~~v~~yd~~t--~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 464 (534)
T PHA03098 388 VNNL-IYVIGGISKNDELLKTVECFSLNT--NKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPV 464 (534)
T ss_pred ECCE-EEEECCcCCCCcccceEEEEeCCC--CeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCC
Confidence 3444 444432 11 136788999877 4455544322111 11122345678877532211100001236666654
Q ss_pred CCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCC---eeEEEEEecCC
Q 004839 302 ASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGR---TYRLCSVSLPL 350 (728)
Q Consensus 302 ~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g---~~~l~~~~l~~ 350 (728)
...|+.+-.......-......++.|+++...++ ...+..+|..+
T Consensus 465 ----~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 465 ----TNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred ----CCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 5789865321111111233445778887754432 23567777654
No 440
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=69.51 E-value=59 Score=34.42 Aligned_cols=104 Identities=14% Similarity=0.136 Sum_probs=53.1
Q ss_pred ceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCce-ec---cC--c---cceeeeEEEecC---CCEEEEEEec--C--C
Q 004839 128 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL-CS---KP--Q---AVRVSNIAWAKD---GQALIYVVTD--Q--N 191 (728)
Q Consensus 128 ~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~-~~---~~--~---~~~~~~~~WspD---g~~l~y~~~~--~--~ 191 (728)
.++|.|||+. |...+.|. |++++ ..|.. .. .. . ......+++.|+ +.+||..... . .
T Consensus 6 ~~a~~pdG~l--~v~e~~G~----i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 6 SMAFLPDGRL--LVAERSGR----IWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp EEEEETTSCE--EEEETTTE----EEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred EEEEeCCCcE--EEEeCCce----EEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 4678999975 33456664 88888 34432 11 10 1 234567888885 3444433221 1 1
Q ss_pred CCcceeEEEECCCC--C--ceeEEe-eecC----cceEEEEEEcCCCCEEEEEEcCC
Q 004839 192 KRPYQIYCSIIGST--D--EDALLL-EESN----ENVYVNIRHTKDFHFVCVHTFST 239 (728)
Q Consensus 192 ~~~~~v~~~~l~t~--~--~~~lv~-~~~~----~~~~~~~~~SpDg~~l~~~~~~~ 239 (728)
....+|+++.+..+ . ..+.++ ..+. ...-..+.+.||| +|+++..+.
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~ 134 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDG 134 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-T
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCC
Confidence 23346887777544 1 122222 2222 2233568899999 788877544
No 441
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=69.47 E-value=1.7e+02 Score=31.60 Aligned_cols=139 Identities=14% Similarity=0.067 Sum_probs=75.3
Q ss_pred cCCCCCCCcEEEeeccc-----ccccCCceEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccC--cccee
Q 004839 99 DFTSGKKIEQKLLDYNQ-----EAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP--QAVRV 171 (728)
Q Consensus 99 ~~~~~~~~~~~lld~n~-----~~~~~~~~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~--~~~~~ 171 (728)
.++.+...+.+++|... ..+++ .-.+....++||...++-.+ ....|+|+........... ....+
T Consensus 234 ilTGG~d~~av~~d~~s~q~l~~~~Gh--~kki~~v~~~~~~~~v~~aS-----ad~~i~vws~~~~s~~~~~~~h~~~V 306 (506)
T KOG0289|consen 234 ILTGGEDKTAVLFDKPSNQILATLKGH--TKKITSVKFHKDLDTVITAS-----ADEIIRVWSVPLSSEPTSSRPHEEPV 306 (506)
T ss_pred ceecCCCCceEEEecchhhhhhhccCc--ceEEEEEEeccchhheeecC-----CcceEEeeccccccCccccccccccc
Confidence 45555555677887632 12322 34677888999987654432 1345777776443322221 13455
Q ss_pred eeEEEecCCCEEEEEEecCCCCcceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 172 SNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 172 ~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
..+.-.|.|.+|+...++. ..-..++.++..-..+..+...--+....+.|||-.+ ... .....|-+.|+..
T Consensus 307 ~~ls~h~tgeYllsAs~d~-----~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLif--gtg-t~d~~vkiwdlks 378 (506)
T KOG0289|consen 307 TGLSLHPTGEYLLSASNDG-----TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIF--GTG-TPDGVVKIWDLKS 378 (506)
T ss_pred eeeeeccCCcEEEEecCCc-----eEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEE--ecc-CCCceEEEEEcCC
Confidence 6667777777776664332 1223345444322223233222235667899999533 222 1235778888876
Q ss_pred C
Q 004839 252 P 252 (728)
Q Consensus 252 ~ 252 (728)
+
T Consensus 379 ~ 379 (506)
T KOG0289|consen 379 Q 379 (506)
T ss_pred c
Confidence 4
No 442
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=69.31 E-value=20 Score=37.96 Aligned_cols=99 Identities=8% Similarity=0.027 Sum_probs=63.2
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
.+...+|+|+|.+|+-.+. ...+.|+|+.+.+.+.... +..+..+.|+|=...|+-+.- -...|+.+.+
T Consensus 266 tVl~~~f~~n~N~Llt~sk-----D~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg----~Dgsvvh~~v 336 (464)
T KOG0284|consen 266 TVLAVKFNPNGNWLLTGSK-----DQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGG----SDGSVVHWVV 336 (464)
T ss_pred eEEEEEEcCCCCeeEEccC-----CceEEEEehhHhHHHHHhhcchhhheeeccccccccceeecc----CCCceEEEec
Confidence 6788999999999876532 2359999998766555433 346788999999988876532 2335766666
Q ss_pred CCCCceeEEeeecCcceEEEEEEcCCCCEEE
Q 004839 203 GSTDEDALLLEESNENVYVNIRHTKDFHFVC 233 (728)
Q Consensus 203 ~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~ 233 (728)
+... .....+...+.-..+++|.|=|..|.
T Consensus 337 ~~~~-p~~~i~~AHd~~iwsl~~hPlGhil~ 366 (464)
T KOG0284|consen 337 GLEE-PLGEIPPAHDGEIWSLAYHPLGHILA 366 (464)
T ss_pred cccc-cccCCCcccccceeeeeccccceeEe
Confidence 6322 11122222222345678888886443
No 443
>PLN02761 lipase class 3 family protein
Probab=69.25 E-value=6.5 Score=43.50 Aligned_cols=40 Identities=18% Similarity=0.087 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHHHcCC---CC-CCcEEEEEeCccHHHHHHHHH
Q 004839 555 SIKDFISCARFLIEKEI---VK-EHKLAGWGYSAGGLLVAAAIN 594 (728)
Q Consensus 555 ~~~D~~~~~~~l~~~~~---~d-~~ri~i~G~S~GG~~~~~~~~ 594 (728)
..+++.+.++.|+++.. -+ .-+|.|.|||+||.|+..++.
T Consensus 270 aR~qVl~eV~rL~~~Y~~~~k~e~~sItVTGHSLGGALAtLaA~ 313 (527)
T PLN02761 270 AREQVLAEVKRLVEYYGTEEEGHEISITVTGHSLGASLALVSAY 313 (527)
T ss_pred HHHHHHHHHHHHHHhcccccCCCCceEEEeccchHHHHHHHHHH
Confidence 45677788888886431 12 348999999999999988775
No 444
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=68.66 E-value=1.4e+02 Score=30.37 Aligned_cols=64 Identities=22% Similarity=0.317 Sum_probs=38.7
Q ss_pred eeeCCCCCEEEEEEEcCCCcEEEEEEEECCCC--c---eeccC--ccceeeeEEEecCCCEEEEEEecCCCCcceeEEEE
Q 004839 129 SEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSG--A---LCSKP--QAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 201 (728)
Q Consensus 129 ~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg--~---~~~~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~ 201 (728)
+..|+|||.||...|. .|-++..+.. . ..++. ......-++||||+..|+|.... ..|..+|
T Consensus 3 ~~~~~~Gk~lAi~qd~------~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~-----G~i~vfd 71 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQ------CIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAEST-----GTIRVFD 71 (282)
T ss_pred eeecCCCcEEEEEecc------EEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCC-----CeEEEEe
Confidence 4579999999998652 2334433221 0 11111 12245678999999999998542 3566666
Q ss_pred CC
Q 004839 202 IG 203 (728)
Q Consensus 202 l~ 203 (728)
+-
T Consensus 72 l~ 73 (282)
T PF15492_consen 72 LM 73 (282)
T ss_pred cc
Confidence 63
No 445
>PLN02753 triacylglycerol lipase
Probab=68.43 E-value=6.9 Score=43.35 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHHHcCCCC---CCcEEEEEeCccHHHHHHHHH
Q 004839 555 SIKDFISCARFLIEKEIVK---EHKLAGWGYSAGGLLVAAAIN 594 (728)
Q Consensus 555 ~~~D~~~~~~~l~~~~~~d---~~ri~i~G~S~GG~~~~~~~~ 594 (728)
..+.+.+.++.|+++.--+ .-+|.|.|||+||.|+..++.
T Consensus 289 ~reQVl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~ 331 (531)
T PLN02753 289 AREQILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAY 331 (531)
T ss_pred HHHHHHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHH
Confidence 4566777888888653221 358999999999999998875
No 446
>PLN00413 triacylglycerol lipase
Probab=68.30 E-value=7.7 Score=42.45 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=28.7
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHH
Q 004839 555 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAIN 594 (728)
Q Consensus 555 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~ 594 (728)
.+..+...++.++++. ...+|.+.|||+||.+|..++.
T Consensus 266 ayy~i~~~Lk~ll~~~--p~~kliVTGHSLGGALAtLaA~ 303 (479)
T PLN00413 266 AYYTILRHLKEIFDQN--PTSKFILSGHSLGGALAILFTA 303 (479)
T ss_pred hHHHHHHHHHHHHHHC--CCCeEEEEecCHHHHHHHHHHH
Confidence 4556677777777542 2358999999999999998875
No 447
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=68.28 E-value=2.7e+02 Score=34.32 Aligned_cols=59 Identities=10% Similarity=0.083 Sum_probs=42.0
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEe
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVT 188 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~ 188 (728)
.+.++.+--|+..|.++. ..|. |.+.|+++........ .+++...+||||++.+++...
T Consensus 70 ~i~s~~fl~d~~~i~v~~-~~G~----iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~ 129 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVIT-ALGD----IILVDPETLELEIVGNVDNGISAASWSPDEELLALITG 129 (1265)
T ss_pred ceEEEEEecccceEEEEe-cCCc----EEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeC
Confidence 344556667777777763 4453 7777988887655444 568899999999998888754
No 448
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=68.20 E-value=1.5e+02 Score=30.49 Aligned_cols=103 Identities=18% Similarity=0.135 Sum_probs=59.0
Q ss_pred EEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecC-CceEEEEeecCCEEEEEEcCCccCCCCCceEEEEeeC
Q 004839 222 NIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-GLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPV 300 (728)
Q Consensus 222 ~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~-~~~~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~ 300 (728)
++.+| +.|.++.-. .+-|.++|+.+|. .++.+..-. ++..|-+.-.|+..|+....++ ++.+++
T Consensus 91 Dv~vs--e~yvyvad~---ssGL~IvDIS~P~-sP~~~~~lnt~gyaygv~vsGn~aYVadlddg---------fLivdv 155 (370)
T COG5276 91 DVRVS--EEYVYVADW---SSGLRIVDISTPD-SPTLIGFLNTDGYAYGVYVSGNYAYVADLDDG---------FLIVDV 155 (370)
T ss_pred eeEec--ccEEEEEcC---CCceEEEeccCCC-CcceeccccCCceEEEEEecCCEEEEeeccCc---------EEEEEC
Confidence 44454 445555443 3458899998875 444443322 3556666666777666543332 556666
Q ss_pred CCCCCCCCCeEEeecCCCceEEEEEeeCCEEEEEEecCCee
Q 004839 301 DASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTY 341 (728)
Q Consensus 301 ~~~~~~~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~ 341 (728)
. +|+.....-..+ .++..-..+.+.+++.|+..+.+|..
T Consensus 156 s-dpssP~lagrya-~~~~d~~~v~ISGn~AYvA~~d~GL~ 194 (370)
T COG5276 156 S-DPSSPQLAGRYA-LPGGDTHDVAISGNYAYVAWRDGGLT 194 (370)
T ss_pred C-CCCCceeeeeec-cCCCCceeEEEecCeEEEEEeCCCeE
Confidence 6 544322221111 12333467788899999998888844
No 449
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=68.09 E-value=30 Score=37.59 Aligned_cols=100 Identities=11% Similarity=0.077 Sum_probs=66.9
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 203 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~ 203 (728)
++.....+|.|.|||..+. + .++.|+...+.+..++.. +..+-++.|++-|+|++-+-.|. .-.+|+..-|
T Consensus 594 QIfSLg~cP~~dWlavGMe-n----s~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDn---lLnawrtPyG 665 (705)
T KOG0639|consen 594 QIFSLGYCPTGDWLAVGME-N----SNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDN---LLNAWRTPYG 665 (705)
T ss_pred hheecccCCCccceeeecc-c----CcEEEEecCCccceeecccccEEEEEEecccCceeeecCchh---hhhhccCccc
Confidence 4556667999999999874 2 347888887777666666 44678899999999887664432 2245555444
Q ss_pred CCCceeEEeeecCcceEEEEEEcCCCCEEEEEEc
Q 004839 204 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTF 237 (728)
Q Consensus 204 t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~ 237 (728)
+. +|+.....-.++..+|.|.|||+--+.
T Consensus 666 as-----iFqskE~SsVlsCDIS~ddkyIVTGSG 694 (705)
T KOG0639|consen 666 AS-----IFQSKESSSVLSCDISFDDKYIVTGSG 694 (705)
T ss_pred cc-----eeeccccCcceeeeeccCceEEEecCC
Confidence 32 454444444455677899998865443
No 450
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=67.63 E-value=6.7 Score=43.81 Aligned_cols=67 Identities=6% Similarity=-0.176 Sum_probs=47.5
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCC---CCccEEE--EcCCCCCCCc-hhhhHHHHHHHHHHHHH
Q 004839 658 YPAVLVTSSFNTRFGVWEAAKWVARVRESTIYD---PKRPILL--NLTTDIVEEN-RYLQCKESALETAFLIK 724 (728)
Q Consensus 658 ~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~---~~~~~~~--~~~~gH~~~~-~~~~~~~~~~~~afl~~ 724 (728)
..+|+.||-.|..||+..+..+++++.+.--.. -.....| .|+.+|.... -....+.+....+|.++
T Consensus 354 GKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 354 GKLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVEN 426 (474)
T ss_pred CeEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhC
Confidence 448999999999999999999999998753110 0122333 7899998654 34455666667788764
No 451
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=67.62 E-value=1.7e+02 Score=30.88 Aligned_cols=178 Identities=13% Similarity=0.103 Sum_probs=88.2
Q ss_pred cceeeeEEEecCCCEEEEEEecCCC--CcceeEEEECCCC--C------ceeEEeeecCcce-------EEEEEEcCCCC
Q 004839 168 AVRVSNIAWAKDGQALIYVVTDQNK--RPYQIYCSIIGST--D------EDALLLEESNENV-------YVNIRHTKDFH 230 (728)
Q Consensus 168 ~~~~~~~~WspDg~~l~y~~~~~~~--~~~~v~~~~l~t~--~------~~~lv~~~~~~~~-------~~~~~~SpDg~ 230 (728)
.++.+.+.|.+++..+ |..+|... .+.++|..++... . .+.......+... .-++++.+||.
T Consensus 19 ~GGlSgl~~~~~~~~~-~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRF-YAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEE-EEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 5678999999755544 44455432 2345676665431 0 1111111222111 12466667776
Q ss_pred EEEEEEcCC----CceEEEEEeCCCCCCCeEEeee-------------cCCceE-EEEeecCCEEEEEEcCCcc--CCC-
Q 004839 231 FVCVHTFST----TSSKVFLINAADPFSGLTLIWE-------------CEGLAH-CIVEHHEGFLYLFTDAAKE--GQE- 289 (728)
Q Consensus 231 ~l~~~~~~~----~~~~l~~~dl~~~~~~~~~l~~-------------~~~~~~-~~~~~dg~~l~~~tn~~~~--~~~- 289 (728)
+++ +.... ....|+.++.++.......+.. ...+.+ ..+++||+.||......-. ...
T Consensus 98 ~~i-s~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWI-SSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEE-EeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 543 33221 1267999998741111111111 011222 3567888888887765411 100
Q ss_pred ----CCceEEEEeeCCCCCCCCCCeEE-eecC------CCceEEEEEeeC-CEEEEEEecC-----CeeEEEEEecC
Q 004839 290 ----ADNHYLLRCPVDASFPSRTWESV-FIDD------QGLVVEDVDFCK-THMALILREG-----RTYRLCSVSLP 349 (728)
Q Consensus 290 ----~~~~~l~~~~~~~~~~~~~~~~l-i~~~------~~~~i~~~~~~~-~~lv~~~~~~-----g~~~l~~~~l~ 349 (728)
....+|+..+.. ... ..+... ..-+ ....+.++...+ +.+++.+|.. ...+|+.+++.
T Consensus 177 ~~~~~~~~ri~~~d~~-~~~-~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPK-TPG-EPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLS 251 (326)
T ss_pred ccccCceEEEEEecCC-CCC-ccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEcc
Confidence 112567777765 211 113322 2222 346677776664 6788888882 23467777764
No 452
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=67.33 E-value=62 Score=39.35 Aligned_cols=110 Identities=14% Similarity=0.174 Sum_probs=62.3
Q ss_pred eeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCC
Q 004839 129 SEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD 206 (728)
Q Consensus 129 ~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~ 206 (728)
+.|--||+++|.+.-....+...|.|+|-+ |..-.... .+-...++|-|.|..|+-........ +|..+.-..-.
T Consensus 201 IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~--~IvffErNGL~ 277 (1265)
T KOG1920|consen 201 ISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDS--DIVFFERNGLR 277 (1265)
T ss_pred EEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCC--cEEEEecCCcc
Confidence 778999999998765544444668999988 54322222 33457799999998887665433221 34333321110
Q ss_pred ce--eEEeeecCcceEEEEEEcCCCCEEEEEEcCCCce
Q 004839 207 ED--ALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSS 242 (728)
Q Consensus 207 ~~--~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 242 (728)
.. .+.+.+ |..-..++.|..++..|++.......+
T Consensus 278 hg~f~l~~p~-de~~ve~L~Wns~sdiLAv~~~~~e~~ 314 (1265)
T KOG1920|consen 278 HGEFVLPFPL-DEKEVEELAWNSNSDILAVVTSNLENS 314 (1265)
T ss_pred ccccccCCcc-cccchheeeecCCCCceeeeecccccc
Confidence 00 111111 111134678888888887765544333
No 453
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=66.89 E-value=1.4e+02 Score=31.95 Aligned_cols=89 Identities=16% Similarity=0.047 Sum_probs=44.9
Q ss_pred EEEEEECCCCceeccCccceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCC
Q 004839 151 TLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFH 230 (728)
Q Consensus 151 ~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~ 230 (728)
.++.+|+++|+.+-.........+. .++..||.... ...|+.+|..+++. ..-+..........+.. .|.
T Consensus 252 ~l~a~d~~tG~~~W~~~~~~~~~p~--~~~~~vyv~~~-----~G~l~~~d~~tG~~-~W~~~~~~~~~~ssp~i--~g~ 321 (377)
T TIGR03300 252 RVAALDLRSGRVLWKRDASSYQGPA--VDDNRLYVTDA-----DGVVVALDRRSGSE-LWKNDELKYRQLTAPAV--VGG 321 (377)
T ss_pred EEEEEECCCCcEEEeeccCCccCce--EeCCEEEEECC-----CCeEEEEECCCCcE-EEccccccCCccccCEE--ECC
Confidence 3888899888754322211222222 24556766532 24788999877631 11111111112222222 355
Q ss_pred EEEEEEcCCCceEEEEEeCCCC
Q 004839 231 FVCVHTFSTTSSKVFLINAADP 252 (728)
Q Consensus 231 ~l~~~~~~~~~~~l~~~dl~~~ 252 (728)
.|++...+ ..|+.+|.+++
T Consensus 322 ~l~~~~~~---G~l~~~d~~tG 340 (377)
T TIGR03300 322 YLVVGDFE---GYLHWLSREDG 340 (377)
T ss_pred EEEEEeCC---CEEEEEECCCC
Confidence 66655432 36888998773
No 454
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=66.54 E-value=1e+02 Score=34.13 Aligned_cols=108 Identities=13% Similarity=-0.015 Sum_probs=57.1
Q ss_pred eeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccC---------ccceeeeEEEecCC------CEEEEEEecC
Q 004839 126 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP---------QAVRVSNIAWAKDG------QALIYVVTDQ 190 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~---------~~~~~~~~~WspDg------~~l~y~~~~~ 190 (728)
--.+.|.|||+.| ++....|. |++++..++....+. .....-.++++||= ++||++-...
T Consensus 32 Pw~maflPDG~ll-VtER~~G~----I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 32 PWALLWGPDNQLW-VTERATGK----ILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred ceEEEEcCCCeEE-EEEecCCE----EEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 3456789999744 44322353 788887665432211 12344678888773 3455432211
Q ss_pred --CC---CcceeEEEECCCC--C--ceeEEee-ecC--cceEEEEEEcCCCCEEEEEEcCC
Q 004839 191 --NK---RPYQIYCSIIGST--D--EDALLLE-ESN--ENVYVNIRHTKDFHFVCVHTFST 239 (728)
Q Consensus 191 --~~---~~~~v~~~~l~t~--~--~~~lv~~-~~~--~~~~~~~~~SpDg~~l~~~~~~~ 239 (728)
.. ...+|.++.+... . ..+.++. .+. ..+...+.+.|||+ |+++..+.
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~ 166 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQ 166 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCC
Confidence 11 2457888877522 1 1233332 211 12234578999996 77766544
No 455
>PLN02606 palmitoyl-protein thioesterase
Probab=66.46 E-value=59 Score=33.69 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=55.9
Q ss_pred CccEEEEEcCCCCCCcCcccHHHHHHHHH-CCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCC
Q 004839 495 QNPGLLHGHGAYGELLDKRWRSELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK 573 (728)
Q Consensus 495 ~~P~vv~~hGg~~~~~~~~~~~~~~~l~~-~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 573 (728)
+.|+ |+.||-......+++....+.+.+ .|+-+..+. -|.+. ++ ..-.+..+-+..+.+.|.+....
T Consensus 26 ~~Pv-ViwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~-ig~~~------~~---s~~~~~~~Qv~~vce~l~~~~~L- 93 (306)
T PLN02606 26 SVPF-VLFHGFGGECSNGKVSNLTQFLINHSGYPGTCVE-IGNGV------QD---SLFMPLRQQASIACEKIKQMKEL- 93 (306)
T ss_pred CCCE-EEECCCCcccCCchHHHHHHHHHhCCCCCeEEEE-ECCCc------cc---ccccCHHHHHHHHHHHHhcchhh-
Confidence 4565 566985333333455555666642 366555554 23211 01 11123334445555555553333
Q ss_pred CCcEEEEEeCccHHHHHHHHHhCCC--ceeEEEEeC
Q 004839 574 EHKLAGWGYSAGGLLVAAAINCCPD--LFRAVVLEV 607 (728)
Q Consensus 574 ~~ri~i~G~S~GG~~~~~~~~~~p~--~f~a~v~~~ 607 (728)
++-+-++|+|.||.+.=+++-+.|+ -++-.|+..
T Consensus 94 ~~G~naIGfSQGglflRa~ierc~~~p~V~nlISlg 129 (306)
T PLN02606 94 SEGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLG 129 (306)
T ss_pred cCceEEEEEcchhHHHHHHHHHCCCCCCcceEEEec
Confidence 2468899999999999888887766 255555543
No 456
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=65.74 E-value=43 Score=36.88 Aligned_cols=86 Identities=10% Similarity=0.157 Sum_probs=48.4
Q ss_pred ceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCC
Q 004839 128 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD 206 (728)
Q Consensus 128 ~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~ 206 (728)
...|||....|+ .|+|.....|+|..+.....-.. +-.+.+++|.|| + +|..-+ +...|
T Consensus 191 ~~~W~~~s~lI~-----sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~-~~~v~S------~nt~R------- 250 (737)
T KOG1524|consen 191 SLSWSTQSNIIA-----SGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-K-DYLLWS------YNTAR------- 250 (737)
T ss_pred EeecCcccccee-----ecCCceeEEeecccCcccccCChhccceeeeeeccc-c-ceeeee------eeeee-------
Confidence 445666666543 24567788899976543332222 336788999999 3 333211 01111
Q ss_pred ceeEEeeecCcceEEEEEEcCCCCEEEEEEcC
Q 004839 207 EDALLLEESNENVYVNIRHTKDFHFVCVHTFS 238 (728)
Q Consensus 207 ~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~ 238 (728)
++.+.......++||+||..+......
T Consensus 251 -----~~~p~~GSifnlsWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 251 -----FSSPRVGSIFNLSWSADGTQATCGTST 277 (737)
T ss_pred -----ecCCCccceEEEEEcCCCceeeccccC
Confidence 222333334568999999988665443
No 457
>PLN02310 triacylglycerol lipase
Probab=64.57 E-value=9.2 Score=41.23 Aligned_cols=40 Identities=20% Similarity=0.116 Sum_probs=28.7
Q ss_pred cHHHHHHHHHHHHHcCC-CC-CCcEEEEEeCccHHHHHHHHH
Q 004839 555 SIKDFISCARFLIEKEI-VK-EHKLAGWGYSAGGLLVAAAIN 594 (728)
Q Consensus 555 ~~~D~~~~~~~l~~~~~-~d-~~ri~i~G~S~GG~~~~~~~~ 594 (728)
..+.+.+.++.|++.-. -+ .-+|.|.|||+||.++..++.
T Consensus 187 a~~qVl~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAtLaA~ 228 (405)
T PLN02310 187 ASEQVMQEVKRLVNFYRGKGEEVSLTVTGHSLGGALALLNAY 228 (405)
T ss_pred HHHHHHHHHHHHHHhhcccCCcceEEEEcccHHHHHHHHHHH
Confidence 34566677777776421 12 248999999999999988774
No 458
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=64.24 E-value=2.2e+02 Score=30.97 Aligned_cols=68 Identities=21% Similarity=0.168 Sum_probs=46.6
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 200 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~ 200 (728)
.+-.+.+||||+|||+.- . + ..|.|+|..|.+.+.... .+.+.+++|-..-..+|-...| +.-+||-.
T Consensus 204 eil~~avS~Dgkylatgg-~-d---~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~D---rsvkvw~~ 273 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGG-R-D---RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASAD---RSVKVWSI 273 (479)
T ss_pred eeEEEEEcCCCcEEEecC-C-C---ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecC---CceEEEeh
Confidence 455678999999999862 1 2 457899999999877633 4567888887666667665544 33345543
No 459
>PLN02633 palmitoyl protein thioesterase family protein
Probab=63.91 E-value=74 Score=33.05 Aligned_cols=102 Identities=15% Similarity=0.062 Sum_probs=56.6
Q ss_pred CCccEEEEEcCCCCCCcCcccHHHHHHHHHC-CeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCC
Q 004839 494 NQNPGLLHGHGAYGELLDKRWRSELKSLLDR-GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIV 572 (728)
Q Consensus 494 ~~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~-Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 572 (728)
.+.|+ |+.||--.....++.....+.+.+. |.-+.+... |.+ . +++ +-.+..+-+..+.+.|.+....
T Consensus 24 ~~~P~-ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~i-g~~-~-----~~s---~~~~~~~Qve~vce~l~~~~~l 92 (314)
T PLN02633 24 VSVPF-IMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEI-GNG-V-----GDS---WLMPLTQQAEIACEKVKQMKEL 92 (314)
T ss_pred CCCCe-EEecCCCcccCCchHHHHHHHHHhCCCCceEEEEE-CCC-c-----ccc---ceeCHHHHHHHHHHHHhhchhh
Confidence 34565 4559843333333444445555443 666665554 222 1 111 2223344444555555543333
Q ss_pred CCCcEEEEEeCccHHHHHHHHHhCCC--ceeEEEEeC
Q 004839 573 KEHKLAGWGYSAGGLLVAAAINCCPD--LFRAVVLEV 607 (728)
Q Consensus 573 d~~ri~i~G~S~GG~~~~~~~~~~p~--~f~a~v~~~ 607 (728)
++-+-++|+|.||.++=.++-+.|+ .++-.|+.+
T Consensus 93 -~~G~naIGfSQGGlflRa~ierc~~~p~V~nlISlg 128 (314)
T PLN02633 93 -SQGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLA 128 (314)
T ss_pred -hCcEEEEEEccchHHHHHHHHHCCCCCCcceEEEec
Confidence 2458999999999999888887776 366666544
No 460
>PLN02162 triacylglycerol lipase
Probab=63.75 E-value=11 Score=41.30 Aligned_cols=38 Identities=24% Similarity=0.122 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHH
Q 004839 555 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAIN 594 (728)
Q Consensus 555 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~ 594 (728)
.+..+.+.++.++++. ...++.+.|||.||.+|..++.
T Consensus 260 ay~~I~~~L~~lL~k~--p~~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 260 AYYTIRQMLRDKLARN--KNLKYILTGHSLGGALAALFPA 297 (475)
T ss_pred hHHHHHHHHHHHHHhC--CCceEEEEecChHHHHHHHHHH
Confidence 4556666666665442 2358999999999999988754
No 461
>PLN02934 triacylglycerol lipase
Probab=63.74 E-value=10 Score=41.93 Aligned_cols=39 Identities=21% Similarity=0.138 Sum_probs=29.9
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHH
Q 004839 554 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAIN 594 (728)
Q Consensus 554 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~ 594 (728)
..+..+...++.++++.- ..+|.+.|||.||.++..++.
T Consensus 302 ~Ay~~v~~~lk~ll~~~p--~~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 302 SAYYAVRSKLKSLLKEHK--NAKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred hHHHHHHHHHHHHHHHCC--CCeEEEeccccHHHHHHHHHH
Confidence 355667778887776532 258999999999999988864
No 462
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=63.56 E-value=59 Score=33.50 Aligned_cols=97 Identities=11% Similarity=0.027 Sum_probs=55.3
Q ss_pred CCEEEEEEEcCCCcEEEEEEEECCCCcee---ccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCCceeE
Q 004839 135 HKFLAYTMYDKDNDYFTLSVRNLNSGALC---SKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDAL 210 (728)
Q Consensus 135 G~~lA~~~~~~g~e~~~l~v~dl~tg~~~---~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~~l 210 (728)
-..|||-.... -+|.|+|+...+.- .+.. ...+..++-.-+|..|+-.+. ...-|.+.|..++..-.-
T Consensus 148 k~~LafPg~k~----GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt----kGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 148 KSLLAFPGFKT----GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAST----KGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred ceEEEcCCCcc----ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEecc----CcEEEEEEEcCCCcEeee
Confidence 34555543333 45889999876652 1211 346778888899976654432 223344555554431111
Q ss_pred EeeecCcceEEEEEEcCCCCEEEEEEcCC
Q 004839 211 LLEESNENVYVNIRHTKDFHFVCVHTFST 239 (728)
Q Consensus 211 v~~~~~~~~~~~~~~SpDg~~l~~~~~~~ 239 (728)
+-...+......+++|||+.+|++.++.+
T Consensus 220 ~RRG~d~A~iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 220 LRRGVDRADIYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred eecCCchheEEEEEeCCCccEEEEEcCCC
Confidence 22333333345678999999998877644
No 463
>PLN02719 triacylglycerol lipase
Probab=62.49 E-value=10 Score=41.87 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHHHcCCC---CCCcEEEEEeCccHHHHHHHHH
Q 004839 555 SIKDFISCARFLIEKEIV---KEHKLAGWGYSAGGLLVAAAIN 594 (728)
Q Consensus 555 ~~~D~~~~~~~l~~~~~~---d~~ri~i~G~S~GG~~~~~~~~ 594 (728)
..+++.+.++.|+++.-- ..-+|.|.|||+||.|+..++.
T Consensus 275 aReQVl~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA~ 317 (518)
T PLN02719 275 AREQVLTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSAY 317 (518)
T ss_pred HHHHHHHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHHH
Confidence 456677788888764221 2358999999999999988775
No 464
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=61.87 E-value=30 Score=35.35 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=24.0
Q ss_pred CcEEEEEeCccHHHHHHHHHhCCC-ceeEEEEeCC
Q 004839 575 HKLAGWGYSAGGLLVAAAINCCPD-LFRAVVLEVP 608 (728)
Q Consensus 575 ~ri~i~G~S~GG~~~~~~~~~~p~-~f~a~v~~~p 608 (728)
+-+-++|+|.||.+.=+++-+.|+ .++-.|+..+
T Consensus 80 ~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlgg 114 (279)
T PF02089_consen 80 NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGG 114 (279)
T ss_dssp T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES-
T ss_pred cceeeeeeccccHHHHHHHHHCCCCCceeEEEecC
Confidence 578999999999999888877654 4666666543
No 465
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=61.75 E-value=57 Score=36.45 Aligned_cols=113 Identities=11% Similarity=0.059 Sum_probs=73.0
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccC--ccceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP--QAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
.+.++.|.-+|.|||-+.-.+++ ..+.|.+|.......-. ..+.+..+.|.|-..+|+..+. ..|.++|+
T Consensus 523 ~i~~vtWHrkGDYlatV~~~~~~--~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq------~~vRiYdL 594 (733)
T KOG0650|consen 523 SIRQVTWHRKGDYLATVMPDSGN--KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ------RSVRIYDL 594 (733)
T ss_pred ccceeeeecCCceEEEeccCCCc--ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec------cceEEEeh
Confidence 56788999999999998765554 56889999766533211 1456778899998777766542 24677787
Q ss_pred CCCC-ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 203 GSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 203 ~t~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
.... ...++ ....+...++.+|.|.-|++.+..+ .+.-+|++-
T Consensus 595 ~kqelvKkL~---tg~kwiS~msihp~GDnli~gs~d~---k~~WfDldl 638 (733)
T KOG0650|consen 595 SKQELVKKLL---TGSKWISSMSIHPNGDNLILGSYDK---KMCWFDLDL 638 (733)
T ss_pred hHHHHHHHHh---cCCeeeeeeeecCCCCeEEEecCCC---eeEEEEccc
Confidence 5422 11111 2222334578899999888777643 455566543
No 466
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=60.88 E-value=2.4e+02 Score=30.29 Aligned_cols=59 Identities=17% Similarity=0.110 Sum_probs=30.7
Q ss_pred eeeeEEEecCCCEEEEEEecCCCCcceeEEE-ECCCC-C---ceeEEeeecCc------ceEEEEEEcCCCCEEEEEEc
Q 004839 170 RVSNIAWAKDGQALIYVVTDQNKRPYQIYCS-IIGST-D---EDALLLEESNE------NVYVNIRHTKDFHFVCVHTF 237 (728)
Q Consensus 170 ~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~-~l~t~-~---~~~lv~~~~~~------~~~~~~~~SpDg~~l~~~~~ 237 (728)
....+++.+|| ||.+. ..+|+++ +.... . +.++++..-.. ....++.+.|||+ |+++..
T Consensus 73 ~p~Gi~~~~~G--lyV~~------~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G 142 (367)
T TIGR02604 73 MVTGLAVAVGG--VYVAT------PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHG 142 (367)
T ss_pred CccceeEecCC--EEEeC------CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecc
Confidence 34678898888 65542 2257766 33221 1 22233322111 1223678999996 566544
No 467
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=60.71 E-value=1.9e+02 Score=29.16 Aligned_cols=116 Identities=14% Similarity=0.134 Sum_probs=60.3
Q ss_pred ceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEe
Q 004839 169 VRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLIN 248 (728)
Q Consensus 169 ~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d 248 (728)
...+++.|.||++.||.+.. .+..|+.+++...-.+++.+... ..+-++++..+|++++ ...+ ...|++++
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d----~~~~i~els~~G~vlr~i~l~g~--~D~EgI~y~g~~~~vl-~~Er--~~~L~~~~ 92 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQD----EPGEIYELSLDGKVLRRIPLDGF--GDYEGITYLGNGRYVL-SEER--DQRLYIFT 92 (248)
T ss_dssp S-EEEEEEETTTTEEEEEET----TTTEEEEEETT--EEEEEE-SS---SSEEEEEE-STTEEEE-EETT--TTEEEEEE
T ss_pred CCccccEEcCCCCeEEEEEC----CCCEEEEEcCCCCEEEEEeCCCC--CCceeEEEECCCEEEE-EEcC--CCcEEEEE
Confidence 35899999999999887753 35689999874322333333332 2245678888887654 3322 24677777
Q ss_pred CCCCCCCe-----EEee---e--cCCceE-EEEeecCCEEEEEEcCCccCCCCCceEEEEeeC
Q 004839 249 AADPFSGL-----TLIW---E--CEGLAH-CIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPV 300 (728)
Q Consensus 249 l~~~~~~~-----~~l~---~--~~~~~~-~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~ 300 (728)
+....... +.+. + ...+.+ ..+++.+++|++...+.. ..|+.++.
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P-------~~l~~~~~ 148 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP-------KRLYEVNG 148 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS-------EEEEEEES
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC-------hhhEEEcc
Confidence 63321111 1111 1 111222 345677788887754432 34666654
No 468
>PLN03037 lipase class 3 family protein; Provisional
Probab=60.46 E-value=12 Score=41.54 Aligned_cols=38 Identities=21% Similarity=0.120 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCC--CCCcEEEEEeCccHHHHHHHHH
Q 004839 557 KDFISCARFLIEKEIV--KEHKLAGWGYSAGGLLVAAAIN 594 (728)
Q Consensus 557 ~D~~~~~~~l~~~~~~--d~~ri~i~G~S~GG~~~~~~~~ 594 (728)
+.+.+.+..|++.--- ..-+|.|.|||+||.||..++.
T Consensus 298 eQVl~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~ 337 (525)
T PLN03037 298 EQVMEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAY 337 (525)
T ss_pred HHHHHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHH
Confidence 4556667777653211 2347999999999999988774
No 469
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=60.45 E-value=31 Score=37.46 Aligned_cols=64 Identities=11% Similarity=-0.090 Sum_probs=33.7
Q ss_pred eeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCCceeEEeeecCc--------------ce---EEEEEEcCCCCEE
Q 004839 170 RVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNE--------------NV---YVNIRHTKDFHFV 232 (728)
Q Consensus 170 ~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~~lv~~~~~~--------------~~---~~~~~~SpDg~~l 232 (728)
-+..+..|.|.|.||++. ....+|..+||..+...+++.+-.-. .. ---+++|.|||.|
T Consensus 313 LitDI~iSlDDrfLYvs~----W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRl 388 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSN----WLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRL 388 (461)
T ss_dssp ----EEE-TTS-EEEEEE----TTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEE
T ss_pred ceEeEEEccCCCEEEEEc----ccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEE
Confidence 457788999999888874 44568888898776544444321000 00 0126789999999
Q ss_pred EEEEc
Q 004839 233 CVHTF 237 (728)
Q Consensus 233 ~~~~~ 237 (728)
+++.+
T Consensus 389 YvTnS 393 (461)
T PF05694_consen 389 YVTNS 393 (461)
T ss_dssp EEE--
T ss_pred EEEee
Confidence 98765
No 470
>KOG4328 consensus WD40 protein [Function unknown]
Probab=60.03 E-value=2.6e+02 Score=30.44 Aligned_cols=116 Identities=10% Similarity=0.062 Sum_probs=68.2
Q ss_pred EeeceeeCCCCC-EEEEEEEcCCCcEEEEEEEECCCCceeccC-----c-cceeeeEEEecCCCEEEEE-EecCCCCcce
Q 004839 125 YEELSEVSPDHK-FLAYTMYDKDNDYFTLSVRNLNSGALCSKP-----Q-AVRVSNIAWAKDGQALIYV-VTDQNKRPYQ 196 (728)
Q Consensus 125 ~~~~~~~SPDG~-~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~-----~-~~~~~~~~WspDg~~l~y~-~~~~~~~~~~ 196 (728)
.+...+|-|-.. .|..+-+..|. |-++|+.+.+..... . ...++.+.|+|.+..-+|. ++|. .
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~----VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG-----t 258 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQ----VGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG-----T 258 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCc----EEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc-----e
Confidence 567778888765 55555466664 889999644322211 1 2357888999977644444 3432 4
Q ss_pred eEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCC
Q 004839 197 IYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 252 (728)
Q Consensus 197 v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~ 252 (728)
|-..|+.....+.+.....+...|.+..++.+.+-+++..+-+ ..-++|+.++
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G---~f~~iD~R~~ 311 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG---NFNVIDLRTD 311 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc---ceEEEEeecC
Confidence 6677776654332222223444556677888877777665543 3445565543
No 471
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.01 E-value=2.1e+02 Score=29.44 Aligned_cols=153 Identities=12% Similarity=0.174 Sum_probs=0.0
Q ss_pred ceEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCcc-----------c-eeeeEEEecCCCEEEEEEec
Q 004839 122 GYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQA-----------V-RVSNIAWAKDGQALIYVVTD 189 (728)
Q Consensus 122 ~~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~-----------~-~~~~~~WspDg~~l~y~~~~ 189 (728)
|+.....+.+.-+|++++--.. ..+|++..++.+..+..... + +..+++|.|..+.|++.+.
T Consensus 127 g~~DpE~Ieyig~n~fvi~dER-----~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE- 200 (316)
T COG3204 127 GFSDPETIEYIGGNQFVIVDER-----DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE- 200 (316)
T ss_pred ccCChhHeEEecCCEEEEEehh-----cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc-
Q ss_pred CCCCcceeEEEECCCCC--ceeEEeeecCcceEE----EEEEcCCCCEEEEEEcCCCceEEEEEeCCCCCCCeEEeeecC
Q 004839 190 QNKRPYQIYCSIIGSTD--EDALLLEESNENVYV----NIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE 263 (728)
Q Consensus 190 ~~~~~~~v~~~~l~t~~--~~~lv~~~~~~~~~~----~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~ 263 (728)
.+|..||.++..... .....-...+..+++ ++.+.+....|++.+. .+..|-.+|+++......-++...
T Consensus 201 --r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~--ESr~l~Evd~~G~~~~~lsL~~g~ 276 (316)
T COG3204 201 --RNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSD--ESRRLLEVDLSGEVIELLSLTKGN 276 (316)
T ss_pred --cCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEec--CCceEEEEecCCCeeeeEEeccCC
Q ss_pred CceEEEE-------eecCCEEEEEEcCC
Q 004839 264 GLAHCIV-------EHHEGFLYLFTDAA 284 (728)
Q Consensus 264 ~~~~~~~-------~~dg~~l~~~tn~~ 284 (728)
.+....+ ..|.+.||+++..+
T Consensus 277 ~gL~~dipqaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 277 HGLSSDIPQAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred CCCcccCCCcceeEECCCCCEEEEecCC
No 472
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=58.30 E-value=60 Score=37.83 Aligned_cols=68 Identities=18% Similarity=0.116 Sum_probs=46.3
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-cceeeeEEEecCCCEEEEEEecCCCCcceeEEEEC
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 202 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l 202 (728)
.+....||+||.+| |+ +|. .-.+.++.++|++..-+.. ...+-.+.||||+........ .++|..+..
T Consensus 253 ~V~~L~fS~~G~~L-lS---GG~-E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~-----DNqI~li~~ 321 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYL-LS---GGR-EGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLE-----DNQIHLIKA 321 (792)
T ss_pred ccceeEEecCCceE-ee---ccc-ceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEec-----CceEEEEec
Confidence 57788999999876 32 343 3568899999998554544 335678999999985555433 235555554
No 473
>PHA02713 hypothetical protein; Provisional
Probab=58.24 E-value=3.4e+02 Score=31.16 Aligned_cols=189 Identities=12% Similarity=0.052 Sum_probs=92.4
Q ss_pred EEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEe-cCCCCcceeEEEECCCCCceeEEeeecCcceEEEEEEc
Q 004839 150 FTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVT-DQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHT 226 (728)
Q Consensus 150 ~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~-~~~~~~~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~S 226 (728)
..++.+|+.++....... ..+.....-.-+| .||..-- +.......+.++|..+..-.. +-.-+.+....... .
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g-~IYviGG~~~~~~~~sve~Ydp~~~~W~~-~~~mp~~r~~~~~~-~ 396 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMIKNRCRFSLAVIDD-TIYAIGGQNGTNVERTIECYTMGDDKWKM-LPDMPIALSSYGMC-V 396 (557)
T ss_pred ceEEEEECCCCeEeeCCCCcchhhceeEEEECC-EEEEECCcCCCCCCceEEEEECCCCeEEE-CCCCCcccccccEE-E
Confidence 458899999887655433 1222222223355 4655432 111123458888877653111 00111111111111 2
Q ss_pred CCCCEEEEEEcCC---------------------CceEEEEEeCCCCCCCeEEeeecCCc-eEEEEeecCCEEEEEEcCC
Q 004839 227 KDFHFVCVHTFST---------------------TSSKVFLINAADPFSGLTLIWECEGL-AHCIVEHHEGFLYLFTDAA 284 (728)
Q Consensus 227 pDg~~l~~~~~~~---------------------~~~~l~~~dl~~~~~~~~~l~~~~~~-~~~~~~~dg~~l~~~tn~~ 284 (728)
-+|+ |++..... ..+.+..+|..+ .++..+.+.... ....+..-++.+|++.-..
T Consensus 397 ~~g~-IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~t--d~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~ 473 (557)
T PHA02713 397 LDQY-IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVN--NIWETLPNFWTGTIRPGVVSHKDDIYVVCDIK 473 (557)
T ss_pred ECCE-EEEEeCCCcccccccccccccccccccccccceEEEECCCC--CeEeecCCCCcccccCcEEEECCEEEEEeCCC
Confidence 2444 44433211 125688888877 456555443211 1112223457788875432
Q ss_pred ccCCCCCceEEEEeeCCCCCCC-CCCeEEeecCCCceEEEEEeeCCEEEEEEecCCeeEEEEEecCC
Q 004839 285 KEGQEADNHYLLRCPVDASFPS-RTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPL 350 (728)
Q Consensus 285 ~~~~~~~~~~l~~~~~~~~~~~-~~~~~li~~~~~~~i~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 350 (728)
+.. .....+.+.+.+ . ..|+.+.+-.....-.++...++.||++...+|...+..+|..+
T Consensus 474 ~~~--~~~~~ve~Ydp~----~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 474 DEK--NVKTCIFRYNTN----TYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CCC--ccceeEEEecCC----CCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCccc
Confidence 111 011234555543 4 57986543333344457777899999988777755556666544
No 474
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=57.76 E-value=26 Score=36.94 Aligned_cols=85 Identities=18% Similarity=0.136 Sum_probs=51.6
Q ss_pred EEEEEcCCCCCCCCCcccccccc-CCCCCcHHHHHHHHHHHHH-cCCCCCCcEEEEEeCccHHHHHHHHHh----C----
Q 004839 527 VVAFADVRGGGGGGKKWHHDGRR-TKKLNSIKDFISCARFLIE-KEIVKEHKLAGWGYSAGGLLVAAAINC----C---- 596 (728)
Q Consensus 527 ~v~~~d~RG~g~~G~~~~~~~~~-~~~~~~~~D~~~~~~~l~~-~~~~d~~ri~i~G~S~GG~~~~~~~~~----~---- 596 (728)
.++..|.+-+.||... ..... .......+|+..+++.+.+ .+.-......|.|-||||..+-.++.. .
T Consensus 3 NvLfiDqPvGvGfSy~--~~~~~~~~d~~~a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~I~~~n~~~~ 80 (319)
T PLN02213 3 NIIFLDQPVGSGFSYS--KTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICC 80 (319)
T ss_pred cEEEecCCCCCCCCCC--CCCCCccccHHHHHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHHHHhhccccc
Confidence 5788898854444211 11111 1111233677766665554 344466789999999999877766542 1
Q ss_pred -C-CceeEEEEeCCcccch
Q 004839 597 -P-DLFRAVVLEVPFLDAT 613 (728)
Q Consensus 597 -p-~~f~a~v~~~p~~d~~ 613 (728)
+ =-+++++...|+++..
T Consensus 81 ~~~inLkGi~IGNg~t~~~ 99 (319)
T PLN02213 81 EPPINLQGYMLGNPVTYMD 99 (319)
T ss_pred CCceeeeEEEeCCCCCCcc
Confidence 1 1478999999988753
No 475
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=57.47 E-value=2.9e+02 Score=30.24 Aligned_cols=114 Identities=8% Similarity=-0.012 Sum_probs=68.7
Q ss_pred EEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc---cceeeeEEEecCCCEEEEEEecCCCCcceeEEE
Q 004839 124 AYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 200 (728)
Q Consensus 124 ~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~ 200 (728)
+.+-...|+|++..++.+.+.+ ..+.++|+.++.. +... .+.+...+|+|-...|+++-. -...|-.+
T Consensus 111 apv~~~~f~~~d~t~l~s~sDd----~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGs----YDg~vrl~ 181 (487)
T KOG0310|consen 111 APVHVTKFSPQDNTMLVSGSDD----KVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTGS----YDGKVRLW 181 (487)
T ss_pred CceeEEEecccCCeEEEecCCC----ceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEecC----CCceEEEE
Confidence 3566678999988886664322 3477888888775 3222 456788899999999988742 22356666
Q ss_pred ECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCCC
Q 004839 201 IIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 252 (728)
Q Consensus 201 ~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~~ 252 (728)
|+.+.... +.+-..+.-.-++-+-|.|..|+-. +.+++-++|+-++
T Consensus 182 DtR~~~~~--v~elnhg~pVe~vl~lpsgs~iasA----gGn~vkVWDl~~G 227 (487)
T KOG0310|consen 182 DTRSLTSR--VVELNHGCPVESVLALPSGSLIASA----GGNSVKVWDLTTG 227 (487)
T ss_pred EeccCCce--eEEecCCCceeeEEEcCCCCEEEEc----CCCeEEEEEecCC
Confidence 66543222 2221111112234456777765422 2457888898764
No 476
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=55.96 E-value=93 Score=33.93 Aligned_cols=81 Identities=11% Similarity=0.045 Sum_probs=45.9
Q ss_pred CccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCC
Q 004839 495 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 574 (728)
Q Consensus 495 ~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 574 (728)
+.|+|+..-=-...-..+........|.+.|+.|+-|.. |.=..| ..+..+..+.++++..+..++.......
T Consensus 116 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~~-g~la~~------~~g~gr~~~~~~I~~~~~~~~~~~~l~g 188 (399)
T PRK05579 116 TAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPAS-GRLACG------DVGPGRMAEPEEIVAAAERALSPKDLAG 188 (399)
T ss_pred CCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCCC-ccccCC------CcCCCCCCCHHHHHHHHHHHhhhcccCC
Confidence 457777762111111223344556788889999886553 221110 1122234678888887776664333455
Q ss_pred CcEEEEEe
Q 004839 575 HKLAGWGY 582 (728)
Q Consensus 575 ~ri~i~G~ 582 (728)
.++.|.|+
T Consensus 189 k~vlITgG 196 (399)
T PRK05579 189 KRVLITAG 196 (399)
T ss_pred CEEEEeCC
Confidence 78999999
No 477
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=55.72 E-value=3e+02 Score=30.97 Aligned_cols=71 Identities=15% Similarity=-0.026 Sum_probs=45.3
Q ss_pred ceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEe
Q 004839 169 VRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLIN 248 (728)
Q Consensus 169 ~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d 248 (728)
..+...+++|+.++|+....|. .|..+|...+. ...+..+--+ ..++|.|||..+++.+.+ .++.+.|
T Consensus 260 s~v~~ca~sp~E~kLvlGC~Dg-----SiiLyD~~~~~-t~~~ka~~~P---~~iaWHp~gai~~V~s~q---GelQ~FD 327 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDG-----SIILYDTTRGV-TLLAKAEFIP---TLIAWHPDGAIFVVGSEQ---GELQCFD 327 (545)
T ss_pred CcceEEecCcccceEEEEecCC-----eEEEEEcCCCe-eeeeeecccc---eEEEEcCCCcEEEEEcCC---ceEEEEE
Confidence 3566778999999998876553 57777775542 1122111111 347899999877765553 3677777
Q ss_pred CCC
Q 004839 249 AAD 251 (728)
Q Consensus 249 l~~ 251 (728)
.+-
T Consensus 328 ~AL 330 (545)
T PF11768_consen 328 MAL 330 (545)
T ss_pred eec
Confidence 764
No 478
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=55.59 E-value=17 Score=36.79 Aligned_cols=38 Identities=24% Similarity=0.208 Sum_probs=28.0
Q ss_pred eEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceecc
Q 004839 123 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSK 165 (728)
Q Consensus 123 ~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~ 165 (728)
+.+-...+||||+..|||+. ..|. |+|.|+-+.+...+
T Consensus 43 ~PQWRkl~WSpD~tlLa~a~-S~G~----i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 43 NPQWRKLAWSPDCTLLAYAE-STGT----IRVFDLMGSELFVI 80 (282)
T ss_pred CchheEEEECCCCcEEEEEc-CCCe----EEEEecccceeEEc
Confidence 33566778999999999985 3453 89999987654433
No 479
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.21 E-value=74 Score=38.30 Aligned_cols=150 Identities=9% Similarity=-0.001 Sum_probs=80.3
Q ss_pred EeeceeeCCCCC-EEEEEEEcCCCcEEEEEEEECCCCceecc--C--ccceeeeEEEecCCCEEEEEEecCCCCcceeEE
Q 004839 125 YEELSEVSPDHK-FLAYTMYDKDNDYFTLSVRNLNSGALCSK--P--QAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 199 (728)
Q Consensus 125 ~~~~~~~SPDG~-~lA~~~~~~g~e~~~l~v~dl~tg~~~~~--~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~ 199 (728)
.+..+.|+|.+. .||=.. .+| +|+|||+..-+.--. . ..+.+..+.|...-..|+-..... .+..+
T Consensus 118 ~V~gLDfN~~q~nlLASGa-~~g----eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~s----g~~~i 188 (1049)
T KOG0307|consen 118 PVLGLDFNPFQGNLLASGA-DDG----EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPS----GRAVI 188 (1049)
T ss_pred ceeeeeccccCCceeeccC-CCC----cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCC----CCcee
Confidence 566789999988 665442 333 499999986331110 1 134677888977666666553322 24455
Q ss_pred EECCCCCceeEEeeecCc-ceEEEEEEcCCCCEEEEE-EcCCCceEEEEEeCCCCCCCeEEeeecCCceE-EEEeecCCE
Q 004839 200 SIIGSTDEDALLLEESNE-NVYVNIRHTKDFHFVCVH-TFSTTSSKVFLINAADPFSGLTLIWECEGLAH-CIVEHHEGF 276 (728)
Q Consensus 200 ~~l~t~~~~~lv~~~~~~-~~~~~~~~SpDg~~l~~~-~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~-~~~~~dg~~ 276 (728)
.||...+ ..+-+.+... .....+.|.||...-++. +.++...-|-+.|+.-.....+.+.....++. ..|.+.+.+
T Consensus 189 WDlr~~~-pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~ 267 (1049)
T KOG0307|consen 189 WDLRKKK-PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPR 267 (1049)
T ss_pred ccccCCC-cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCch
Confidence 5665442 2222222222 224568999999754444 44444456667776543333344433333322 234454545
Q ss_pred EEEEEcCC
Q 004839 277 LYLFTDAA 284 (728)
Q Consensus 277 l~~~tn~~ 284 (728)
|++.+-.+
T Consensus 268 lllSsgkD 275 (1049)
T KOG0307|consen 268 LLLSSGKD 275 (1049)
T ss_pred hhhcccCC
Confidence 55544433
No 480
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=54.44 E-value=1.3e+02 Score=31.20 Aligned_cols=102 Identities=10% Similarity=0.120 Sum_probs=58.9
Q ss_pred eeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCc-eecc-Cc---cceeeeEEEecCCCEEEEEEecCCCCcceeEEE
Q 004839 126 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA-LCSK-PQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 200 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~-~~~~-~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~ 200 (728)
+.-.+|++|+..+|.+.. .. +|.|+...+.. .... +. ...+..++|+|.+..|+-...|+ +.-||-.
T Consensus 13 itchAwn~drt~iAv~~~--~~---evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~dr---nayVw~~ 84 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPN--NH---EVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDR---NAYVWTQ 84 (361)
T ss_pred eeeeeecCCCceEEeccC--Cc---eEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCC---Ccccccc
Confidence 445679999999998743 22 25555555544 2211 11 23566799999999997765543 3334443
Q ss_pred ECCCCC-ceeEEeeecCcceEEEEEEcCCCCEEEEEEc
Q 004839 201 IIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTF 237 (728)
Q Consensus 201 ~l~t~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~ 237 (728)
. ..+. ..+++.-.-+. -...+.|||.+..+++-+.
T Consensus 85 ~-~~~~WkptlvLlRiNr-AAt~V~WsP~enkFAVgSg 120 (361)
T KOG1523|consen 85 P-SGGTWKPTLVLLRINR-AATCVKWSPKENKFAVGSG 120 (361)
T ss_pred C-CCCeeccceeEEEecc-ceeeEeecCcCceEEeccC
Confidence 2 2222 34444433332 2345789999887765544
No 481
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=54.42 E-value=21 Score=34.07 Aligned_cols=31 Identities=39% Similarity=0.522 Sum_probs=24.1
Q ss_pred CcEEEEEeCccHHHHHHHHHh--C----CCceeEEEE
Q 004839 575 HKLAGWGYSAGGLLVAAAINC--C----PDLFRAVVL 605 (728)
Q Consensus 575 ~ri~i~G~S~GG~~~~~~~~~--~----p~~f~a~v~ 605 (728)
.+|.++|.|.|+.++..++.. . .+.++++|+
T Consensus 81 ~kivl~GYSQGA~V~~~~~~~~~l~~~~~~~I~avvl 117 (179)
T PF01083_consen 81 TKIVLAGYSQGAMVVGDALSGDGLPPDVADRIAAVVL 117 (179)
T ss_dssp SEEEEEEETHHHHHHHHHHHHTTSSHHHHHHEEEEEE
T ss_pred CCEEEEecccccHHHHHHHHhccCChhhhhhEEEEEE
Confidence 499999999999999999876 1 235566654
No 482
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=54.20 E-value=16 Score=38.73 Aligned_cols=36 Identities=28% Similarity=0.115 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHHHH
Q 004839 557 KDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAIN 594 (728)
Q Consensus 557 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~~~ 594 (728)
..+.+.++.|+++.- .-+|.+.|||+||.||..++.
T Consensus 155 ~~~~~~~~~L~~~~~--~~~i~vTGHSLGgAlA~laa~ 190 (336)
T KOG4569|consen 155 SGLDAELRRLIELYP--NYSIWVTGHSLGGALASLAAL 190 (336)
T ss_pred HHHHHHHHHHHHhcC--CcEEEEecCChHHHHHHHHHH
Confidence 456667777776533 468999999999999988875
No 483
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=54.15 E-value=2.4e+02 Score=28.97 Aligned_cols=113 Identities=14% Similarity=0.014 Sum_probs=68.6
Q ss_pred eEEeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccC-ccceeeeEEEecCCC--EEEEEEecCCCCcceeEE
Q 004839 123 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP-QAVRVSNIAWAKDGQ--ALIYVVTDQNKRPYQIYC 199 (728)
Q Consensus 123 ~~~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~-~~~~~~~~~WspDg~--~l~y~~~~~~~~~~~v~~ 199 (728)
.+.+....|=|=..-+ |+ .++-..+|.|+|..|-+..... .++.+..-+|||=.. .|+-+. .+..+|-+
T Consensus 101 ky~iss~~WyP~DtGm-Ft---ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~g----tr~~~VrL 172 (397)
T KOG4283|consen 101 KYAISSAIWYPIDTGM-FT---SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAG----TRDVQVRL 172 (397)
T ss_pred eeeeeeeEEeeecCce-ee---cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEe----cCCCcEEE
Confidence 4456666666533322 22 1333456999999886544332 267788889998653 454443 34558888
Q ss_pred EECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEE
Q 004839 200 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVF 245 (728)
Q Consensus 200 ~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~ 245 (728)
-|+.++.-.-.+. .... -.+.+.|||...|++.+..-++.-++|
T Consensus 173 CDi~SGs~sH~Ls-GHr~-~vlaV~Wsp~~e~vLatgsaDg~irlW 216 (397)
T KOG4283|consen 173 CDIASGSFSHTLS-GHRD-GVLAVEWSPSSEWVLATGSADGAIRLW 216 (397)
T ss_pred EeccCCcceeeec-cccC-ceEEEEeccCceeEEEecCCCceEEEE
Confidence 9999886222222 2222 246789999999998877655444444
No 484
>PRK13615 lipoprotein LpqB; Provisional
Probab=52.80 E-value=93 Score=35.45 Aligned_cols=79 Identities=10% Similarity=0.051 Sum_probs=49.7
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceecc-Cc-------cceeeeEEEecCCCEEEEEEecCCCCcce
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSK-PQ-------AVRVSNIAWAKDGQALIYVVTDQNKRPYQ 196 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~-~~-------~~~~~~~~WspDg~~l~y~~~~~~~~~~~ 196 (728)
.+..+++|+||-++|...+.+|..+-.|-.+--.++....+ +. ......+.|..|++-.+..+.. ....+
T Consensus 418 ~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~~~~--~~~~~ 495 (557)
T PRK13615 418 RVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLTLAP--DGERQ 495 (557)
T ss_pred eeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEeccC--CCCce
Confidence 68899999999999999876665554443333344533333 21 2255678999998744444222 23346
Q ss_pred eEEEECCCC
Q 004839 197 IYCSIIGST 205 (728)
Q Consensus 197 v~~~~l~t~ 205 (728)
++++.++.+
T Consensus 496 v~~v~v~g~ 504 (557)
T PRK13615 496 VELHQVGGP 504 (557)
T ss_pred EEEEECCCc
Confidence 888888754
No 485
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=52.72 E-value=63 Score=34.63 Aligned_cols=74 Identities=23% Similarity=0.154 Sum_probs=50.8
Q ss_pred HHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCC----cHHHHHHHHHHHHHcCCCCCCcEEEEEeCccHHHHHHH
Q 004839 517 ELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLN----SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAA 592 (728)
Q Consensus 517 ~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~----~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~~~~~ 592 (728)
....|.++|+.|+-.|- .+.-|... .-.|+...+++...+ ....++.++|.|.|+=+.-.+
T Consensus 279 v~~~l~~~gvpVvGvds-------------LRYfW~~rtPe~~a~Dl~r~i~~y~~~--w~~~~~~liGySfGADvlP~~ 343 (456)
T COG3946 279 VAEALQKQGVPVVGVDS-------------LRYFWSERTPEQIAADLSRLIRFYARR--WGAKRVLLIGYSFGADVLPFA 343 (456)
T ss_pred HHHHHHHCCCceeeeeh-------------hhhhhccCCHHHHHHHHHHHHHHHHHh--hCcceEEEEeecccchhhHHH
Confidence 46789999999998872 12223323 345666666666543 356899999999999988888
Q ss_pred HHhCCCceeEEEE
Q 004839 593 INCCPDLFRAVVL 605 (728)
Q Consensus 593 ~~~~p~~f~a~v~ 605 (728)
.++-|...+..|.
T Consensus 344 ~n~L~~~~r~~v~ 356 (456)
T COG3946 344 YNRLPPATRQRVR 356 (456)
T ss_pred HHhCCHHHHHHHH
Confidence 8877765444443
No 486
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=52.01 E-value=2.9e+02 Score=28.55 Aligned_cols=165 Identities=12% Similarity=0.049 Sum_probs=0.0
Q ss_pred eeceeeCCCCC----EEEEEEEcCCCcEEEEEEEECCCCceeccCcc---------------------ceeeeEEEec--
Q 004839 126 EELSEVSPDHK----FLAYTMYDKDNDYFTLSVRNLNSGALCSKPQA---------------------VRVSNIAWAK-- 178 (728)
Q Consensus 126 ~~~~~~SPDG~----~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~---------------------~~~~~~~Wsp-- 178 (728)
+..+++-.... -.||..|..+. .|.|+|+++|+..++... ++..+++-+|
T Consensus 63 lndl~VD~~~~~~~~~~aYItD~~~~---glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~ 139 (287)
T PF03022_consen 63 LNDLVVDVRDGNCDDGFAYITDSGGP---GLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPIS 139 (287)
T ss_dssp EEEEEEECTTTTS-SEEEEEEETTTC---EEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTS
T ss_pred cceEEEEccCCCCcceEEEEeCCCcC---cEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCC
Q ss_pred -CCCEEEEEEecCCCCcceeEEEE---CCCCC-ceeE------EeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEE
Q 004839 179 -DGQALIYVVTDQNKRPYQIYCSI---IGSTD-EDAL------LLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLI 247 (728)
Q Consensus 179 -Dg~~l~y~~~~~~~~~~~v~~~~---l~t~~-~~~l------v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~ 247 (728)
||++|||...... ++|++. |.... .+.. ..-........+...+++|...+-..... .|+..
T Consensus 140 ~d~r~LYf~~lss~----~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~---aI~~w 212 (287)
T PF03022_consen 140 PDGRWLYFHPLSSR----KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQN---AIGCW 212 (287)
T ss_dssp TTS-EEEEEETT-S----EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCT---EEEEE
T ss_pred CCccEEEEEeCCCC----cEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCC---eEEEE
Q ss_pred eCCC----CCCCeEEeeec-CCceEEEEeec--CCEEEEEEcCCccC------CCCCceEEEEeeC
Q 004839 248 NAAD----PFSGLTLIWEC-EGLAHCIVEHH--EGFLYLFTDAAKEG------QEADNHYLLRCPV 300 (728)
Q Consensus 248 dl~~----~~~~~~~l~~~-~~~~~~~~~~d--g~~l~~~tn~~~~~------~~~~~~~l~~~~~ 300 (728)
+..+ ..-......++ -.......-.. .+.||+++|+-... ..-.||+|+++++
T Consensus 213 ~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl~~~~~~~~~~~e~nfri~~~~v 278 (287)
T PF03022_consen 213 DPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRLQRFAYGNLNPDEVNFRIWRARV 278 (287)
T ss_dssp ETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S--SSTGGG---SS-SEEEEES-H
T ss_pred eCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcchHhhccCCCCCccEEeEEEeCH
No 487
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=51.69 E-value=34 Score=23.14 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=19.2
Q ss_pred CCCCEEEEEEEcCCCcEEEEEEEECCCCceec
Q 004839 133 PDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS 164 (728)
Q Consensus 133 PDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~ 164 (728)
|||++|. ..+...+ .|.++|+++++.+.
T Consensus 1 pd~~~ly-v~~~~~~---~v~~id~~~~~~~~ 28 (42)
T TIGR02276 1 PDGTKLY-VTNSGSN---TVSVIDTATNKVIA 28 (42)
T ss_pred CCCCEEE-EEeCCCC---EEEEEECCCCeEEE
Confidence 7889874 4455433 58889998876544
No 488
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=51.64 E-value=1.3e+02 Score=34.20 Aligned_cols=21 Identities=10% Similarity=-0.108 Sum_probs=16.0
Q ss_pred cceEEEEEEcCCCCEEEEEEc
Q 004839 217 ENVYVNIRHTKDFHFVCVHTF 237 (728)
Q Consensus 217 ~~~~~~~~~SpDg~~l~~~~~ 237 (728)
..-+.++.|||||+.|+++..
T Consensus 501 gaE~tG~~fspDg~tlFvniQ 521 (524)
T PF05787_consen 501 GAEITGPCFSPDGRTLFVNIQ 521 (524)
T ss_pred CcccccceECCCCCEEEEEEe
Confidence 333568899999999988653
No 489
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.37 E-value=71 Score=38.43 Aligned_cols=140 Identities=11% Similarity=0.075 Sum_probs=73.6
Q ss_pred CCCCcEEEeecccccccCCceE------EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceec-cCcc---ceee
Q 004839 103 GKKIEQKLLDYNQEAERFGGYA------YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS-KPQA---VRVS 172 (728)
Q Consensus 103 ~~~~~~~lld~n~~~~~~~~~~------~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~-~~~~---~~~~ 172 (728)
++..|-.|.|.|....... +- .+..++|.-.-.+|.-+....| ...|+|+...+.+. +... ...+
T Consensus 136 a~~geI~iWDlnn~~tP~~-~~~~~~~~eI~~lsWNrkvqhILAS~s~sg----~~~iWDlr~~~pii~ls~~~~~~~~S 210 (1049)
T KOG0307|consen 136 ADDGEILIWDLNKPETPFT-PGSQAPPSEIKCLSWNRKVSHILASGSPSG----RAVIWDLRKKKPIIKLSDTPGRMHCS 210 (1049)
T ss_pred CCCCcEEEeccCCcCCCCC-CCCCCCcccceEeccchhhhHHhhccCCCC----CceeccccCCCcccccccCCCcccee
Confidence 3344556778887654322 10 2233344433333333322222 37889998775433 2222 2467
Q ss_pred eEEEecCCCEEEEEEecCCCCcceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 173 NIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 173 ~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
.++|.||+.+-+.+..++...+ -|-..|+.-......+++.... =.+.+.|++.+..+++++.. +++++..+..+
T Consensus 211 ~l~WhP~~aTql~~As~dd~~P-viqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgk--D~~ii~wN~~t 285 (1049)
T KOG0307|consen 211 VLAWHPDHATQLLVASGDDSAP-VIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGK--DNRIICWNPNT 285 (1049)
T ss_pred eeeeCCCCceeeeeecCCCCCc-eeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccC--CCCeeEecCCC
Confidence 9999999976666655543322 3334444222111223322222 24678899888666666553 34677777766
No 490
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=50.29 E-value=3.2e+02 Score=28.55 Aligned_cols=204 Identities=8% Similarity=0.095 Sum_probs=0.0
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc-----cceeeeEEEecCCCEEEEEEecCCCCcceeEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-----AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 199 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~-----~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~ 199 (728)
.+..+++-|+.-.|..+...+-. |+++++.++.-+.+.. .+.+-++.|++||++|+=.-.|..- .+|+
T Consensus 137 sINeik~~p~~~qlvls~SkD~s----vRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhsl---k~W~ 209 (385)
T KOG1034|consen 137 SINEIKFHPDRPQLVLSASKDHS----VRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSL---KLWR 209 (385)
T ss_pred cchhhhcCCCCCcEEEEecCCce----EEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceE---EEEe
Q ss_pred EE----------------------CCCCCceeEEeeecCc--------ceEEEEEEcCCCCEEEEEEcC-CCceEEEEEe
Q 004839 200 SI----------------------IGSTDEDALLLEESNE--------NVYVNIRHTKDFHFVCVHTFS-TTSSKVFLIN 248 (728)
Q Consensus 200 ~~----------------------l~t~~~~~lv~~~~~~--------~~~~~~~~SpDg~~l~~~~~~-~~~~~l~~~d 248 (728)
++ +.+.......|...+- +|+.++.+|+.+.--+..-.. +-...+.-+-
T Consensus 210 l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vk 289 (385)
T KOG1034|consen 210 LNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVK 289 (385)
T ss_pred cChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccC
Q ss_pred CCCCCCCeEEeeecCC----ceEEEEeecCCEEEEEEcCCccCCCCCceEEEEeeCCCCCCCCCCeEEeecCCCceEEEE
Q 004839 249 AADPFSGLTLIWECEG----LAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDV 324 (728)
Q Consensus 249 l~~~~~~~~~l~~~~~----~~~~~~~~dg~~l~~~tn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~i~~~ 324 (728)
..........-.+-.. -..+.+++.++.|++.-..+. +|..+++ +.++..-.++.....+..+...
T Consensus 290 p~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~---------v~vwdL~-~~ep~~~ttl~~s~~~~tVRQ~ 359 (385)
T KOG1034|consen 290 PPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGK---------VYVWDLD-NNEPPKCTTLTHSKSGSTVRQT 359 (385)
T ss_pred CCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCc---------EEEEECC-CCCCccCceEEeccccceeeee
Q ss_pred EeeC-CEEEEEEecCCeeEEEEEe
Q 004839 325 DFCK-THMALILREGRTYRLCSVS 347 (728)
Q Consensus 325 ~~~~-~~lv~~~~~~g~~~l~~~~ 347 (728)
.... +.+++...++| .++++|
T Consensus 360 sfS~dgs~lv~vcdd~--~Vwrwd 381 (385)
T KOG1034|consen 360 SFSRDGSILVLVCDDG--TVWRWD 381 (385)
T ss_pred eecccCcEEEEEeCCC--cEEEEE
No 491
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=49.62 E-value=3.1e+02 Score=28.26 Aligned_cols=82 Identities=9% Similarity=0.014 Sum_probs=44.7
Q ss_pred cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCC-CC-ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEE
Q 004839 168 AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS-TD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVF 245 (728)
Q Consensus 168 ~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t-~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~ 245 (728)
.+.++.++|||....++-..+ + ...|...++.. +. ..+... +.+.. .+.+.||.||..++....+ .++-
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~S---W-D~tVR~wevq~~g~~~~ka~~-~~~~P-vL~v~WsddgskVf~g~~D---k~~k 97 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGS---W-DGTVRIWEVQNSGQLVPKAQQ-SHDGP-VLDVCWSDDGSKVFSGGCD---KQAK 97 (347)
T ss_pred ccchheeEeccccCceEEecc---c-CCceEEEEEecCCcccchhhh-ccCCC-eEEEEEccCCceEEeeccC---CceE
Confidence 567899999995544443221 1 12444445433 22 111111 12222 3578999999776654443 3577
Q ss_pred EEeCCCCCCCeEEee
Q 004839 246 LINAADPFSGLTLIW 260 (728)
Q Consensus 246 ~~dl~~~~~~~~~l~ 260 (728)
+.||++ ++...+.
T Consensus 98 ~wDL~S--~Q~~~v~ 110 (347)
T KOG0647|consen 98 LWDLAS--GQVSQVA 110 (347)
T ss_pred EEEccC--CCeeeee
Confidence 788887 4444443
No 492
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.58 E-value=3.5e+02 Score=28.81 Aligned_cols=214 Identities=14% Similarity=0.056 Sum_probs=106.1
Q ss_pred CccEEEEEcCCCCCCcCcccHHHHHHHHHCCeEEEEEcCCCCCCCCCccccccccCCCCCcHHHHHHHHHHHHHcCCCCC
Q 004839 495 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 574 (728)
Q Consensus 495 ~~P~vv~~hGg~~~~~~~~~~~~~~~l~~~Gy~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 574 (728)
+.|+|+.+..+ +. .+..-......+.++||.++..=.+-.-- .-.......+..+....+..|++....|+
T Consensus 38 ~k~Iv~~~gWa-g~-~~r~l~ky~~~Yq~~g~~~~~~tap~~~~-------~~~~s~~~~sl~~~~~~l~~L~~~~~~~~ 108 (350)
T KOG2521|consen 38 EKPIVVLLGWA-GA-IDRNLMKYSKIYQDKGYIVVRITAPCPSV-------FLSASRRILSLSLASTRLSELLSDYNSDP 108 (350)
T ss_pred cccEEEEeeec-cc-cchhHHHHHHHHhcCCceEEEecCccccc-------ccccccccchhhHHHHHHHHHhhhccCCc
Confidence 33666665543 22 22323344567778999988765543221 11112233455555556666666555899
Q ss_pred CcEEEEEeCccHHHHHHHH---HhCC-----CceeEEEEe-CCc-----ccchhhccCCCCCC-Cc--------------
Q 004839 575 HKLAGWGYSAGGLLVAAAI---NCCP-----DLFRAVVLE-VPF-----LDATNTLLYPILPL-IA-------------- 625 (728)
Q Consensus 575 ~ri~i~G~S~GG~~~~~~~---~~~p-----~~f~a~v~~-~p~-----~d~~~~~~~~~~~~-~~-------------- 625 (728)
.+|...=.|+||.+.+... ...+ +++...+.. +|. .+.... .....+. ..
T Consensus 109 ~pi~fh~FS~ng~~~~~si~~~~~~~~~~~~~~~~~~~fdS~p~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~i~~~~ 187 (350)
T KOG2521|consen 109 CPIIFHVFSGNGVRLMYSISLQLIKHEPKAAQLSGGIIFDSAPARSSPVQLGWAV-SFSSPPDDYVARWARLNYHITLLT 187 (350)
T ss_pred CceEEEEecCCceeehHHHHHHHhhcCchhHhhcCCceEeccccccchhhhccee-ccccCchhhHHHHHhcCeEEEEEE
Confidence 9999999999997766544 2222 122322221 111 111100 0000000 00
Q ss_pred ccccccCCCCCHHHHHHHHccCcc-------c-ccccCC--CCCeEEEEcCCCCCCCHHHHHHHHHHHHhCCCCCCCccE
Q 004839 626 ADYEEFGYPGDIDDFHAIRNYSPY-------D-NIQKDV--LYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPI 695 (728)
Q Consensus 626 ~~~~~~g~p~~~~~~~~~~~~sP~-------~-~i~~~~--~~P~lli~g~~D~~Vp~~~~~~~~~~L~~~~~~~~~~~~ 695 (728)
....++|.- ....+....++ + ...... ..+.+.+.+..|..+|..+-+++.+..+..|+. -.
T Consensus 188 ~~~~~~~~~----~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~----v~ 259 (350)
T KOG2521|consen 188 MAGNEGGAY----LLGPLAEKISMSRKYHFLDRYEEQRNELPWNQLYLYSDNDDVLPADEIEKFIALRREKGVN----VK 259 (350)
T ss_pred eeecccchh----hhhhhhhccccccchHHHHHHHhhhhcccccceeecCCccccccHHHHHHHHHHHHhcCce----EE
Confidence 001111111 01111111110 1 011112 456788889999999999999999999888843 11
Q ss_pred EE-EcCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 004839 696 LL-NLTTDIVEENRYLQCKESALETAFLIKMM 726 (728)
Q Consensus 696 ~~-~~~~gH~~~~~~~~~~~~~~~~afl~~~l 726 (728)
.+ +.++-|...-+...........+|+....
T Consensus 260 s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~~ 291 (350)
T KOG2521|consen 260 SVKFKDSEHVAHFRSFPKTYLKKCSEFLRSVI 291 (350)
T ss_pred EeeccCccceeeeccCcHHHHHHHHHHHHhcc
Confidence 22 45566654333333333444567877643
No 493
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=49.11 E-value=3.8e+02 Score=28.99 Aligned_cols=89 Identities=18% Similarity=0.126 Sum_probs=44.6
Q ss_pred EEEEEECCCCceeccCccceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCCCceeEEeeecCcceEEEEEEcCCCC
Q 004839 151 TLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFH 230 (728)
Q Consensus 151 ~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~~~~~lv~~~~~~~~~~~~~~SpDg~ 230 (728)
.++.+|+++|+.+-.........+ ..++..||+... ..+|+.++..+++. ..-...........+.. .+.
T Consensus 267 ~l~ald~~tG~~~W~~~~~~~~~~--~~~~~~vy~~~~-----~g~l~ald~~tG~~-~W~~~~~~~~~~~sp~v--~~g 336 (394)
T PRK11138 267 NLVALDLRSGQIVWKREYGSVNDF--AVDGGRIYLVDQ-----NDRVYALDTRGGVE-LWSQSDLLHRLLTAPVL--YNG 336 (394)
T ss_pred eEEEEECCCCCEEEeecCCCccCc--EEECCEEEEEcC-----CCeEEEEECCCCcE-EEcccccCCCcccCCEE--ECC
Confidence 388999999975432221111122 234556776632 24789999877631 11111111111222222 234
Q ss_pred EEEEEEcCCCceEEEEEeCCCC
Q 004839 231 FVCVHTFSTTSSKVFLINAADP 252 (728)
Q Consensus 231 ~l~~~~~~~~~~~l~~~dl~~~ 252 (728)
+|++...+ ..|+.+|.+++
T Consensus 337 ~l~v~~~~---G~l~~ld~~tG 355 (394)
T PRK11138 337 YLVVGDSE---GYLHWINREDG 355 (394)
T ss_pred EEEEEeCC---CEEEEEECCCC
Confidence 45554433 36888898874
No 494
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=48.90 E-value=3.5e+02 Score=28.62 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=40.3
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecCCCEEEEEEec
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTD 189 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~ 189 (728)
++...-+-|+--.++-. . |...|+++|..+|+...-.. .+....+.++.-|+.|+-.+.|
T Consensus 110 ~vt~v~~hp~~~~v~~a-s----~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsD 171 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSA-S----EDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSD 171 (406)
T ss_pred ceeeeeeccCceEEEEe-c----CCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCc
Confidence 66677778876544433 2 23569999999998744222 3457788888888877766544
No 495
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=48.66 E-value=4.9e+02 Score=30.22 Aligned_cols=58 Identities=9% Similarity=0.161 Sum_probs=40.7
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCcc-ceeeeEEEecCCCEEEEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQA-VRVSNIAWAKDGQALIYVV 187 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~~-~~~~~~~WspDg~~l~y~~ 187 (728)
-+.+++|.-||++|+... .+|. +.|=.+++.+..-...+ .....+.||+|.+.++|..
T Consensus 117 vV~SmsWn~dG~kIcIvY-eDGa----vIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ 175 (1189)
T KOG2041|consen 117 VVVSMSWNLDGTKICIVY-EDGA----VIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKK 175 (1189)
T ss_pred EEEEEEEcCCCcEEEEEE-ccCC----EEEEeeccceecchhcchheccceeecccHHHHHhhh
Confidence 577889999999999885 4554 66666666554332222 2346789999998887764
No 496
>PRK13614 lipoprotein LpqB; Provisional
Probab=48.64 E-value=4.7e+02 Score=30.02 Aligned_cols=122 Identities=11% Similarity=0.046 Sum_probs=66.0
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCce-------eccCc-cc-eeeeEEEecCCCEEEEEEecCCCCcc
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL-------CSKPQ-AV-RVSNIAWAKDGQALIYVVTDQNKRPY 195 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~-------~~~~~-~~-~~~~~~WspDg~~l~y~~~~~~~~~~ 195 (728)
.+..|+|+++| + +|+...+.. ..-+.+.+-.+++. ....- .+ .+..+.-|+||-+++....... ..
T Consensus 384 ~Lt~PS~d~~g-~-vWtv~~g~~-~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g--~~ 458 (573)
T PRK13614 384 TLTRPSFSPQD-W-VWTAGPGGN-GRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNG--KS 458 (573)
T ss_pred CccCCcccCCC-C-EEEeeCCCC-ceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCC--cc
Confidence 47789999999 4 466554332 22233333333331 11111 22 4889999999999988764432 22
Q ss_pred eeEEEECCCC--Cc-eeEEee-e-cCcceEEEEEEcCCCCEEEEEEcCCCceEEEEEeCCC
Q 004839 196 QIYCSIIGST--DE-DALLLE-E-SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 251 (728)
Q Consensus 196 ~v~~~~l~t~--~~-~~lv~~-~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~dl~~ 251 (728)
+|+..-+... .. ..+... + ....-..++.|..|+..++..........++++.+..
T Consensus 459 ~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~~~~~~~~~~~~~v~v~~ 519 (573)
T PRK13614 459 RVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVVVTKASATSNVVPELLSVDA 519 (573)
T ss_pred EEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEEEEeccCCCcceEEEEEeCC
Confidence 4665443221 11 122110 0 0011235688998888666665555556788888854
No 497
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=48.23 E-value=4e+02 Score=29.07 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=43.3
Q ss_pred EeeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceec----c-------------Cc---cceeeeEEEecCCCEEE
Q 004839 125 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS----K-------------PQ---AVRVSNIAWAKDGQALI 184 (728)
Q Consensus 125 ~~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~----~-------------~~---~~~~~~~~WspDg~~l~ 184 (728)
.+-.+.+|||++++ |+.+.+| +|.-+++.+|+... . .. ...+-.++-|+||++|+
T Consensus 144 s~~~vals~d~~~~-fsask~g----~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla 218 (479)
T KOG0299|consen 144 SVTSVALSPDDKRV-FSASKDG----TILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA 218 (479)
T ss_pred cceEEEeeccccce-eecCCCc----ceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence 55677889999977 6665555 36666676665321 0 00 01234678999999887
Q ss_pred EEEecCCCCcceeEEEECCCC
Q 004839 185 YVVTDQNKRPYQIYCSIIGST 205 (728)
Q Consensus 185 y~~~~~~~~~~~v~~~~l~t~ 205 (728)
..- +...|.+.+..+.
T Consensus 219 tgg-----~d~~v~Iw~~~t~ 234 (479)
T KOG0299|consen 219 TGG-----RDRHVQIWDCDTL 234 (479)
T ss_pred ecC-----CCceEEEecCccc
Confidence 752 3334555565554
No 498
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=48.20 E-value=1.6e+02 Score=32.87 Aligned_cols=115 Identities=12% Similarity=0.046 Sum_probs=0.0
Q ss_pred eeceeeCCCCCEEEEEEEcCCCcEEEEEEEECCCCceeccCc--cceeeeEEEecC-CCE--EEEEEecCCCCcceeEEE
Q 004839 126 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKD-GQA--LIYVVTDQNKRPYQIYCS 200 (728)
Q Consensus 126 ~~~~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspD-g~~--l~y~~~~~~~~~~~v~~~ 200 (728)
+....+||||+.++..+ .+|.++|+++++.+.... ...+..+.|..+ ... -++.......+...+|..
T Consensus 147 ~~sl~is~D~~~l~~as-------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTAS-------RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred cceEEEcCCCCEEEecc-------ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Q ss_pred ECCCCC-ceeEEeeecCcceEEEEEEcCCCCEEEEEEcCCCceEEEEE
Q 004839 201 IIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLI 247 (728)
Q Consensus 201 ~l~t~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~ 247 (728)
+-.... .-...+..++.+.+.+-....|+.-.+..+......-+...
T Consensus 220 ~~~~kkks~~~sl~~~dipv~~ds~~~ed~~~~l~lAst~~~g~v~~~ 267 (541)
T KOG4547|consen 220 EKEDKKKSLSCSLTVPDIPVTSDSGLLEDGTIPLVLASTLIPGIVHLK 267 (541)
T ss_pred EcccccchhheeeccCCCCeEeccccccccccceEEeeeccCceeeec
No 499
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=48.10 E-value=1.7e+02 Score=34.99 Aligned_cols=109 Identities=14% Similarity=0.169 Sum_probs=64.6
Q ss_pred eeeCCCCCEEEEEEEcCCCcEEEEEEEECCCC-ceeccCc--cceeeeEEEecCCCEEEEEEecCCCCcceeEEEECCCC
Q 004839 129 SEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSG-ALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 205 (728)
Q Consensus 129 ~~~SPDG~~lA~~~~~~g~e~~~l~v~dl~tg-~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~v~~~~l~t~ 205 (728)
+.+|.|+....+......++..++.......+ ....++. .....-+.|..|++.|+|..........++|.+++++.
T Consensus 345 ~~~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~ 424 (755)
T KOG2100|consen 345 PVFSSDGSSYLKVDSVSDGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISLGSG 424 (755)
T ss_pred ceEeecCCceeEEEeeccCCEEEEEEEEcCCCCccccccccceEEEEeccccCCCceEEEEecCCCCCceEEEEEEcccc
Confidence 45777775555543333333666766666666 4444443 22334567778999999987655445568999999876
Q ss_pred CceeEEeeec-CcceEEEEEEcCCCCEEEEEEc
Q 004839 206 DEDALLLEES-NENVYVNIRHTKDFHFVCVHTF 237 (728)
Q Consensus 206 ~~~~lv~~~~-~~~~~~~~~~SpDg~~l~~~~~ 237 (728)
....+.-... ..--+.++.+++..++++....
T Consensus 425 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~ 457 (755)
T KOG2100|consen 425 TVESLTCSLITGPCTYLSVSFSKSAKYYVLSCS 457 (755)
T ss_pred ccccccccCCCCcceEEEEecCCcccEEEEEcc
Confidence 5222222111 1223456777887887766654
No 500
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=48.10 E-value=4.6e+02 Score=29.76 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=24.7
Q ss_pred eeeeEEEecCCCEEEEEEecCC---------------CCcceeEEEECCCC
Q 004839 170 RVSNIAWAKDGQALIYVVTDQN---------------KRPYQIYCSIIGST 205 (728)
Q Consensus 170 ~~~~~~WspDg~~l~y~~~~~~---------------~~~~~v~~~~l~t~ 205 (728)
+...+.+.|....+|++..... +...+||+++....
T Consensus 351 RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~ 401 (524)
T PF05787_consen 351 RPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGN 401 (524)
T ss_pred CccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCC
Confidence 4567788898888888765433 23358999987654
Done!