Query 004840
Match_columns 728
No_of_seqs 297 out of 1539
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 13:48:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4248 Ubiquitin-like protein 100.0 2.9E-39 6.3E-44 370.8 12.1 597 22-728 328-989 (1143)
2 cd01807 GDX_N ubiquitin-like d 99.7 5.5E-17 1.2E-21 137.3 8.6 74 19-92 1-74 (74)
3 PTZ00044 ubiquitin; Provisiona 99.6 7.8E-16 1.7E-20 129.9 8.9 74 19-92 1-74 (76)
4 cd01793 Fubi Fubi ubiquitin-li 99.6 6.5E-16 1.4E-20 130.9 8.3 72 19-92 1-72 (74)
5 cd01797 NIRF_N amino-terminal 99.6 7.7E-16 1.7E-20 133.0 8.4 74 19-92 1-76 (78)
6 cd01805 RAD23_N Ubiquitin-like 99.6 1.7E-15 3.7E-20 127.9 9.2 74 19-92 1-76 (77)
7 cd01806 Nedd8 Nebb8-like ubiq 99.6 2.4E-15 5.2E-20 125.7 9.3 74 19-92 1-74 (76)
8 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 1.9E-15 4.2E-20 129.4 8.3 72 18-89 1-72 (73)
9 cd01802 AN1_N ubiquitin-like d 99.6 3.2E-15 7E-20 135.8 9.5 76 17-92 26-101 (103)
10 cd01809 Scythe_N Ubiquitin-lik 99.6 3.1E-15 6.7E-20 123.9 8.5 72 19-90 1-72 (72)
11 cd01803 Ubiquitin Ubiquitin. U 99.6 3.5E-15 7.6E-20 124.8 8.6 74 19-92 1-74 (76)
12 cd01810 ISG15_repeat2 ISG15 ub 99.6 3E-15 6.4E-20 126.9 8.1 72 21-92 1-72 (74)
13 cd01798 parkin_N amino-termina 99.6 2.6E-15 5.6E-20 125.6 7.6 70 21-90 1-70 (70)
14 cd01794 DC_UbP_C dendritic cel 99.6 4.3E-15 9.2E-20 126.0 7.4 69 21-89 1-69 (70)
15 cd01804 midnolin_N Ubiquitin-l 99.6 6.8E-15 1.5E-19 126.6 8.7 74 18-92 1-74 (78)
16 cd01792 ISG15_repeat1 ISG15 ub 99.6 9.3E-15 2E-19 125.9 8.0 74 19-92 3-78 (80)
17 cd01808 hPLIC_N Ubiquitin-like 99.5 1.7E-14 3.7E-19 121.2 7.9 71 19-90 1-71 (71)
18 PF00240 ubiquitin: Ubiquitin 99.5 3E-14 6.6E-19 117.7 8.1 68 24-91 1-68 (69)
19 cd01790 Herp_N Homocysteine-re 99.5 3.1E-14 6.7E-19 124.5 7.8 71 19-89 2-78 (79)
20 cd01796 DDI1_N DNA damage indu 99.5 7.5E-14 1.6E-18 118.1 7.3 68 21-88 1-70 (71)
21 cd01812 BAG1_N Ubiquitin-like 99.5 1.1E-13 2.5E-18 114.7 7.5 70 19-89 1-70 (71)
22 TIGR00601 rad23 UV excision re 99.5 1.5E-13 3.3E-18 149.4 9.4 76 19-94 1-79 (378)
23 cd01813 UBP_N UBP ubiquitin pr 99.4 2.1E-13 4.6E-18 116.8 7.6 70 19-89 1-73 (74)
24 KOG0010 Ubiquitin-like protein 99.4 2.8E-13 6E-18 149.5 8.8 79 17-96 14-92 (493)
25 cd01800 SF3a120_C Ubiquitin-li 99.4 3.5E-13 7.6E-18 115.1 7.6 67 26-92 5-71 (76)
26 KOG0005 Ubiquitin-like protein 99.4 1.1E-13 2.4E-18 115.3 4.2 70 19-88 1-70 (70)
27 cd01763 Sumo Small ubiquitin-r 99.4 2.1E-12 4.6E-17 113.4 10.1 79 14-92 7-85 (87)
28 smart00213 UBQ Ubiquitin homol 99.3 3.1E-12 6.6E-17 102.7 7.0 64 19-83 1-64 (64)
29 KOG0004 Ubiquitin/40S ribosoma 99.3 9.3E-13 2E-17 127.3 3.7 76 19-94 1-76 (156)
30 KOG0003 Ubiquitin/60s ribosoma 99.3 3.4E-13 7.5E-18 123.6 -0.7 74 19-92 1-74 (128)
31 cd01799 Hoil1_N Ubiquitin-like 99.2 2.4E-11 5.2E-16 104.8 7.6 69 20-89 4-74 (75)
32 cd01815 BMSC_UbP_N Ubiquitin-l 99.2 1.7E-11 3.7E-16 106.4 4.8 54 37-90 19-75 (75)
33 KOG0011 Nucleotide excision re 99.2 2.8E-11 6.1E-16 128.5 7.1 75 19-93 1-77 (340)
34 cd01814 NTGP5 Ubiquitin-like N 99.2 3.9E-11 8.4E-16 111.2 6.3 79 17-95 3-95 (113)
35 cd01769 UBL Ubiquitin-like dom 99.2 1E-10 2.2E-15 95.0 7.4 68 22-89 1-68 (69)
36 PF11976 Rad60-SLD: Ubiquitin- 99.1 5E-10 1.1E-14 93.7 8.7 71 19-89 1-72 (72)
37 KOG4248 Ubiquitin-like protein 98.9 9.7E-10 2.1E-14 129.4 6.6 75 19-94 3-77 (1143)
38 cd01795 USP48_C USP ubiquitin- 98.9 3.1E-09 6.7E-14 97.0 6.6 63 30-92 16-79 (107)
39 cd01789 Alp11_N Ubiquitin-like 98.9 1E-08 2.2E-13 90.0 9.4 74 19-92 2-83 (84)
40 KOG0001 Ubiquitin and ubiquiti 98.8 3.2E-08 7E-13 79.0 9.0 72 21-92 2-73 (75)
41 PF14560 Ubiquitin_2: Ubiquiti 98.7 4.5E-08 9.7E-13 85.7 8.5 74 19-92 2-85 (87)
42 PF13881 Rad60-SLD_2: Ubiquiti 98.7 1.4E-07 3.1E-12 87.5 10.1 77 18-94 2-92 (111)
43 PLN02560 enoyl-CoA reductase 98.6 1.3E-07 2.8E-12 101.1 7.7 71 19-89 1-82 (308)
44 cd00196 UBQ Ubiquitin-like pro 98.4 1.7E-06 3.7E-11 64.7 7.3 67 23-89 2-68 (69)
45 cd01801 Tsc13_N Ubiquitin-like 98.3 9.5E-07 2.1E-11 76.0 6.5 68 20-87 2-74 (77)
46 cd01788 ElonginB Ubiquitin-lik 98.3 1.6E-06 3.4E-11 81.2 7.8 72 19-91 3-81 (119)
47 cd01811 OASL_repeat1 2'-5' oli 98.1 8.9E-06 1.9E-10 71.2 7.6 73 19-92 1-78 (80)
48 PF11543 UN_NPL4: Nuclear pore 97.9 2.4E-05 5.2E-10 68.8 6.0 71 17-88 3-78 (80)
49 KOG1769 Ubiquitin-like protein 97.7 0.00031 6.8E-09 64.5 10.3 76 16-91 18-93 (99)
50 KOG1872 Ubiquitin-specific pro 97.7 6E-05 1.3E-09 84.2 6.7 74 18-92 3-77 (473)
51 KOG0003 Ubiquitin/60s ribosoma 97.7 1.2E-05 2.6E-10 74.7 0.8 40 105-144 8-48 (128)
52 cd01802 AN1_N ubiquitin-like d 97.7 5.2E-06 1.1E-10 75.9 -1.7 64 76-144 9-75 (103)
53 KOG0004 Ubiquitin/40S ribosoma 97.6 2.1E-05 4.5E-10 77.0 1.3 46 100-145 1-49 (156)
54 KOG0005 Ubiquitin-like protein 97.6 1.7E-05 3.6E-10 67.0 0.3 41 105-145 8-49 (70)
55 KOG3493 Ubiquitin-like protein 97.5 4.6E-05 1E-09 65.3 1.8 70 19-88 2-71 (73)
56 KOG0006 E3 ubiquitin-protein l 97.5 0.00015 3.3E-09 77.8 5.9 72 19-90 1-75 (446)
57 cd01793 Fubi Fubi ubiquitin-li 97.1 2.7E-05 5.9E-10 66.2 -3.8 43 101-143 2-45 (74)
58 PF08817 YukD: WXG100 protein 97.1 0.0016 3.4E-08 56.5 6.6 70 18-87 2-78 (79)
59 cd01794 DC_UbP_C dendritic cel 96.8 0.0001 2.2E-09 62.9 -3.0 40 104-143 5-45 (70)
60 cd01807 GDX_N ubiquitin-like d 96.8 8.3E-05 1.8E-09 63.2 -3.5 40 105-144 8-48 (74)
61 PF00789 UBX: UBX domain; Int 96.7 0.014 3E-07 50.3 9.6 73 16-88 4-81 (82)
62 PTZ00044 ubiquitin; Provisiona 96.6 0.00012 2.5E-09 62.0 -3.7 39 105-143 8-47 (76)
63 KOG4495 RNA polymerase II tran 96.5 0.0049 1.1E-07 56.7 5.6 61 19-80 3-65 (110)
64 KOG4583 Membrane-associated ER 96.4 0.00064 1.4E-08 73.7 -1.1 79 16-94 7-91 (391)
65 cd01810 ISG15_repeat2 ISG15 ub 96.3 0.00029 6.2E-09 60.0 -3.2 38 105-142 6-44 (74)
66 cd01796 DDI1_N DNA damage indu 96.3 0.00032 6.9E-09 59.7 -3.3 38 106-143 8-46 (71)
67 cd01797 NIRF_N amino-terminal 96.1 0.00042 9E-09 60.4 -3.2 38 105-142 8-48 (78)
68 PF10302 DUF2407: DUF2407 ubiq 96.0 0.014 3E-07 53.5 5.8 57 21-77 3-64 (97)
69 PF11470 TUG-UBL1: GLUT4 regul 96.0 0.022 4.8E-07 48.8 6.4 62 26-87 4-65 (65)
70 cd01798 parkin_N amino-termina 96.0 0.00055 1.2E-08 57.5 -3.2 40 105-144 6-46 (70)
71 KOG0013 Uncharacterized conser 95.9 0.015 3.3E-07 59.9 5.9 75 17-91 144-221 (231)
72 smart00166 UBX Domain present 95.8 0.058 1.3E-06 46.8 8.6 71 17-87 3-78 (80)
73 cd01791 Ubl5 UBL5 ubiquitin-li 95.8 0.00068 1.5E-08 58.6 -3.6 38 105-142 9-47 (73)
74 COG5417 Uncharacterized small 95.6 0.053 1.2E-06 48.1 7.5 69 19-87 5-80 (81)
75 COG5227 SMT3 Ubiquitin-like pr 95.6 0.037 8E-07 50.7 6.6 73 17-89 23-95 (103)
76 cd01800 SF3a120_C Ubiquitin-li 95.6 0.00096 2.1E-08 57.3 -3.3 39 105-143 5-44 (76)
77 cd01767 UBX UBX (ubiquitin reg 95.5 0.095 2.1E-06 45.1 8.6 68 18-87 2-74 (77)
78 cd01799 Hoil1_N Ubiquitin-like 95.4 0.0017 3.7E-08 56.4 -2.4 38 105-143 10-48 (75)
79 cd01806 Nedd8 Nebb8-like ubiq 95.4 0.0012 2.7E-08 55.2 -3.3 38 105-142 8-46 (76)
80 cd01803 Ubiquitin Ubiquitin. U 95.3 0.0012 2.5E-08 55.4 -3.5 38 105-142 8-46 (76)
81 KOG3206 Alpha-tubulin folding 95.3 0.041 8.8E-07 56.9 6.7 75 19-93 2-84 (234)
82 cd01770 p47_UBX p47-like ubiqu 95.1 0.13 2.7E-06 45.3 8.3 68 18-85 4-75 (79)
83 cd01804 midnolin_N Ubiquitin-l 95.1 0.0016 3.4E-08 56.5 -3.6 38 105-142 9-47 (78)
84 cd01805 RAD23_N Ubiquitin-like 95.1 0.0017 3.7E-08 55.0 -3.3 38 105-142 8-48 (77)
85 cd01772 SAKS1_UBX SAKS1-like U 94.9 0.17 3.7E-06 44.2 8.6 69 18-87 4-77 (79)
86 cd01809 Scythe_N Ubiquitin-lik 94.8 0.0019 4.1E-08 53.6 -3.8 38 105-142 8-46 (72)
87 cd01792 ISG15_repeat1 ISG15 ub 94.8 0.0027 5.8E-08 55.0 -3.0 38 105-142 10-50 (80)
88 cd01813 UBP_N UBP ubiquitin pr 94.7 0.0032 6.9E-08 54.4 -2.7 37 105-141 7-44 (74)
89 cd01774 Faf1_like2_UBX Faf1 ik 94.4 0.27 6E-06 43.9 8.8 70 17-87 3-82 (85)
90 KOG1639 Steroid reductase requ 94.2 0.07 1.5E-06 56.5 5.3 70 19-88 1-77 (297)
91 PF13019 Telomere_Sde2: Telome 94.1 0.21 4.5E-06 50.0 8.0 74 19-92 1-86 (162)
92 cd01812 BAG1_N Ubiquitin-like 93.9 0.0049 1.1E-07 51.2 -3.1 37 106-142 8-45 (71)
93 cd01773 Faf1_like1_UBX Faf1 ik 93.3 0.67 1.5E-05 41.6 9.1 73 17-90 4-81 (82)
94 cd01771 Faf1_UBX Faf1 UBX doma 93.2 0.63 1.4E-05 41.2 8.7 71 17-88 3-78 (80)
95 PF00240 ubiquitin: Ubiquitin 92.7 0.0059 1.3E-07 50.5 -4.4 39 105-143 3-42 (69)
96 cd01790 Herp_N Homocysteine-re 92.3 0.03 6.5E-07 49.7 -0.7 39 105-143 9-52 (79)
97 cd01763 Sumo Small ubiquitin-r 92.2 0.011 2.5E-07 52.1 -3.5 41 105-145 19-60 (87)
98 cd01808 hPLIC_N Ubiquitin-like 92.2 0.011 2.5E-07 49.8 -3.4 38 105-143 8-46 (71)
99 TIGR00601 rad23 UV excision re 91.7 0.021 4.5E-07 63.5 -3.0 39 105-143 8-50 (378)
100 smart00213 UBQ Ubiquitin homol 91.0 0.015 3.3E-07 46.5 -3.6 35 108-142 10-45 (64)
101 PF09379 FERM_N: FERM N-termin 90.6 1.5 3.1E-05 37.3 7.9 68 23-90 1-77 (80)
102 PF15044 CLU_N: Mitochondrial 89.4 0.54 1.2E-05 41.3 4.3 56 35-90 1-58 (76)
103 cd01815 BMSC_UbP_N Ubiquitin-l 87.9 0.057 1.2E-06 47.7 -2.7 28 117-144 20-51 (75)
104 PLN02799 Molybdopterin synthas 87.1 2.2 4.8E-05 37.0 6.6 66 18-88 1-76 (82)
105 cd01795 USP48_C USP ubiquitin- 87.1 0.098 2.1E-06 48.8 -1.8 36 108-143 15-51 (107)
106 cd06407 PB1_NLP A PB1 domain i 86.5 3.3 7.1E-05 37.0 7.5 70 19-89 1-80 (82)
107 cd00754 MoaD Ubiquitin domain 86.3 3.1 6.7E-05 35.3 7.0 55 30-89 17-75 (80)
108 cd06409 PB1_MUG70 The MUG70 pr 86.0 3.6 7.9E-05 37.4 7.6 44 20-63 2-48 (86)
109 smart00666 PB1 PB1 domain. Pho 85.5 3 6.4E-05 35.7 6.6 46 19-65 2-47 (81)
110 PRK08364 sulfur carrier protei 85.5 5.5 0.00012 34.1 8.1 62 18-89 4-65 (70)
111 smart00295 B41 Band 4.1 homolo 85.4 7 0.00015 38.1 9.9 74 17-90 2-83 (207)
112 PRK06437 hypothetical protein; 84.7 4.9 0.00011 34.4 7.4 54 27-89 9-62 (67)
113 KOG0012 DNA damage inducible p 84.5 1.5 3.2E-05 48.9 5.2 65 27-91 11-77 (380)
114 cd06406 PB1_P67 A PB1 domain i 82.3 3.7 8.1E-05 37.0 5.9 46 19-66 3-48 (80)
115 PF12754 Blt1: Cell-cycle cont 82.2 0.42 9.1E-06 52.1 0.0 68 13-80 73-160 (309)
116 PF14533 USP7_C2: Ubiquitin-sp 80.1 1.4 3E-05 45.3 2.9 114 20-135 20-161 (213)
117 cd06408 PB1_NoxR The PB1 domai 80.0 7.8 0.00017 35.4 7.2 47 18-66 2-48 (86)
118 PF14836 Ubiquitin_3: Ubiquiti 79.3 8.8 0.00019 35.2 7.4 63 29-92 14-82 (88)
119 cd01760 RBD Ubiquitin-like dom 77.6 9.9 0.00022 33.4 7.0 45 21-65 2-46 (72)
120 PF00564 PB1: PB1 domain; Int 77.2 8.3 0.00018 33.0 6.4 47 18-65 1-48 (84)
121 cd01814 NTGP5 Ubiquitin-like N 75.9 0.33 7.2E-06 46.1 -2.7 33 111-143 19-59 (113)
122 PF11620 GABP-alpha: GA-bindin 75.0 7.4 0.00016 35.7 5.6 62 30-91 4-65 (88)
123 cd05992 PB1 The PB1 domain is 74.6 10 0.00022 32.2 6.2 45 20-65 2-47 (81)
124 PF14453 ThiS-like: ThiS-like 74.4 6.7 0.00015 33.3 4.9 48 32-90 9-56 (57)
125 cd01769 UBL Ubiquitin-like dom 74.2 0.28 6.1E-06 39.6 -3.3 37 106-142 6-43 (69)
126 TIGR02958 sec_mycoba_snm4 secr 74.2 14 0.00031 42.3 9.0 73 19-92 3-82 (452)
127 TIGR01687 moaD_arch MoaD famil 74.0 15 0.00032 32.2 7.2 56 29-88 16-82 (88)
128 KOG2982 Uncharacterized conser 74.0 5.4 0.00012 44.3 5.4 56 33-88 352-415 (418)
129 smart00455 RBD Raf-like Ras-bi 73.8 10 0.00022 32.9 6.0 45 21-65 2-46 (70)
130 PF08337 Plexin_cytopl: Plexin 72.5 13 0.00029 43.7 8.4 78 15-92 186-291 (539)
131 PF12436 USP7_ICP0_bdg: ICP0-b 72.1 8.1 0.00018 40.7 6.0 79 13-91 63-153 (249)
132 smart00144 PI3K_rbd PI3-kinase 71.2 29 0.00063 32.3 8.8 77 16-92 15-106 (108)
133 cd06398 PB1_Joka2 The PB1 doma 70.7 19 0.00041 32.9 7.3 71 20-91 2-88 (91)
134 KOG0011 Nucleotide excision re 69.8 1 2.2E-05 49.6 -1.2 42 103-144 6-50 (340)
135 KOG0001 Ubiquitin and ubiquiti 69.6 0.52 1.1E-05 37.4 -2.7 37 105-141 7-44 (75)
136 PF10790 DUF2604: Protein of U 68.3 17 0.00036 32.1 6.0 65 27-91 4-72 (76)
137 TIGR01682 moaD molybdopterin c 68.0 26 0.00056 30.3 7.3 54 30-88 17-74 (80)
138 KOG0010 Ubiquitin-like protein 67.6 1.6 3.4E-05 50.3 -0.3 35 109-143 26-61 (493)
139 cd01768 RA RA (Ras-associating 66.3 41 0.0009 29.1 8.3 35 28-62 12-48 (87)
140 PF10209 DUF2340: Uncharacteri 66.3 9 0.00019 37.1 4.4 57 34-90 21-108 (122)
141 PF00788 RA: Ras association ( 65.8 35 0.00076 29.3 7.7 53 20-72 4-68 (93)
142 PRK06083 sulfur carrier protei 65.7 31 0.00068 31.1 7.5 66 14-89 14-79 (84)
143 PF00794 PI3K_rbd: PI3-kinase 65.2 35 0.00076 31.1 7.9 76 16-91 14-103 (106)
144 PRK06488 sulfur carrier protei 62.9 30 0.00065 28.9 6.5 55 27-89 6-60 (65)
145 PF02597 ThiS: ThiS family; I 62.9 26 0.00056 29.3 6.2 58 30-89 13-72 (77)
146 KOG2086 Protein tyrosine phosp 61.4 13 0.00029 41.9 5.3 68 18-85 305-376 (380)
147 cd06410 PB1_UP2 Uncharacterize 60.0 25 0.00054 32.6 6.0 40 23-63 17-56 (97)
148 PLN02560 enoyl-CoA reductase 59.5 1.3 2.9E-05 48.2 -2.7 36 106-141 9-49 (308)
149 PF02196 RBD: Raf-like Ras-bin 56.6 43 0.00094 29.0 6.6 52 21-72 3-56 (71)
150 KOG2507 Ubiquitin regulatory p 55.7 59 0.0013 37.6 9.1 121 17-154 313-438 (506)
151 cd06396 PB1_NBR1 The PB1 domai 54.0 38 0.00082 30.7 5.9 36 19-55 1-38 (81)
152 PRK05863 sulfur carrier protei 52.3 46 0.001 28.1 6.0 55 27-89 6-60 (65)
153 KOG4250 TANK binding protein k 51.5 36 0.00079 41.3 7.0 43 27-69 323-365 (732)
154 cd01787 GRB7_RA RA (RAS-associ 51.4 45 0.00097 30.6 6.0 59 19-77 3-68 (85)
155 PRK06944 sulfur carrier protei 49.4 83 0.0018 25.9 7.0 55 27-89 6-60 (65)
156 cd00565 ThiS ThiaminS ubiquiti 49.0 48 0.001 27.7 5.5 56 27-89 5-60 (65)
157 PRK05659 sulfur carrier protei 46.5 79 0.0017 26.2 6.5 56 27-89 6-61 (66)
158 cd01817 RGS12_RBD Ubiquitin do 46.5 1.1E+02 0.0024 27.4 7.5 43 23-65 4-46 (73)
159 PRK08053 sulfur carrier protei 45.2 1E+02 0.0022 25.9 7.0 56 27-89 6-61 (66)
160 TIGR01683 thiS thiamine biosyn 45.2 70 0.0015 26.7 5.9 56 27-89 4-59 (64)
161 KOG0007 Splicing factor 3a, su 43.4 11 0.00023 41.6 1.0 50 25-74 289-339 (341)
162 KOG2689 Predicted ubiquitin re 38.3 76 0.0016 34.8 6.3 71 17-87 209-284 (290)
163 KOG2561 Adaptor protein NUB1, 38.0 11 0.00025 43.4 0.2 58 33-90 54-111 (568)
164 cd01788 ElonginB Ubiquitin-lik 37.6 11 0.00023 36.4 -0.1 32 109-140 13-45 (119)
165 KOG1364 Predicted ubiquitin re 37.4 37 0.00081 38.1 4.0 68 17-84 275-349 (356)
166 cd06411 PB1_p51 The PB1 domain 37.2 65 0.0014 29.2 4.7 36 30-65 8-43 (78)
167 PRK11130 moaD molybdopterin sy 36.6 2.2E+02 0.0048 24.8 8.0 51 33-88 19-75 (81)
168 cd01764 Urm1 Urm1-like ubuitin 36.1 89 0.0019 28.5 5.6 55 33-89 23-89 (94)
169 KOG3439 Protein conjugation fa 36.0 1.2E+02 0.0027 29.2 6.6 52 17-68 29-84 (116)
170 PF08825 E2_bind: E2 binding d 35.4 61 0.0013 29.3 4.4 56 33-89 1-70 (84)
171 PF14732 UAE_UbL: Ubiquitin/SU 34.5 44 0.00095 30.1 3.3 53 37-89 7-68 (87)
172 PRK07440 hypothetical protein; 34.3 2.1E+02 0.0045 24.8 7.3 62 18-89 4-65 (70)
173 PRK01777 hypothetical protein; 33.6 2.3E+02 0.0049 26.3 7.8 64 17-89 2-75 (95)
174 cd01775 CYR1_RA Ubiquitin doma 33.1 1.8E+02 0.0038 27.5 7.0 47 19-65 3-51 (97)
175 cd01777 SNX27_RA Ubiquitin dom 31.9 89 0.0019 28.9 4.8 42 19-60 2-43 (87)
176 PF02505 MCR_D: Methyl-coenzym 29.8 97 0.0021 31.3 5.1 54 17-77 66-120 (153)
177 PF10407 Cytokin_check_N: Cdc1 29.7 1.6E+02 0.0034 26.4 5.8 61 29-91 3-71 (73)
178 cd01818 TIAM1_RBD Ubiquitin do 29.6 1.4E+02 0.0029 27.2 5.4 40 22-61 3-42 (77)
179 PF11069 DUF2870: Protein of u 29.4 64 0.0014 30.4 3.5 32 60-92 3-36 (98)
180 PRK11840 bifunctional sulfur c 28.3 1.4E+02 0.0031 33.4 6.6 58 27-91 6-63 (326)
181 PF14451 Ub-Mut7C: Mut7-C ubiq 28.3 1.8E+02 0.004 26.1 6.1 53 28-89 22-75 (81)
182 cd06397 PB1_UP1 Uncharacterize 28.1 1.5E+02 0.0034 27.1 5.6 43 20-63 2-44 (82)
183 PF12436 USP7_ICP0_bdg: ICP0-b 27.2 1.4E+02 0.003 31.6 6.0 45 18-62 176-223 (249)
184 KOG4261 Talin [Cytoskeleton] 27.1 85 0.0018 38.8 4.8 107 19-132 4-120 (1003)
185 PRK05738 rplW 50S ribosomal pr 26.9 2.2E+02 0.0047 26.1 6.5 40 28-67 20-60 (92)
186 PF14847 Ras_bdg_2: Ras-bindin 26.4 1.5E+02 0.0032 28.0 5.4 37 20-56 2-38 (105)
187 TIGR03260 met_CoM_red_D methyl 25.1 1.3E+02 0.0028 30.4 5.0 54 17-77 65-118 (150)
188 cd06404 PB1_aPKC PB1 domain is 25.0 1.6E+02 0.0036 27.0 5.2 45 19-64 1-46 (83)
189 PF02017 CIDE-N: CIDE-N domain 24.8 2.1E+02 0.0046 25.9 5.8 64 21-90 5-71 (78)
190 smart00314 RA Ras association 24.5 2.7E+02 0.0059 24.3 6.5 53 19-71 5-65 (90)
191 PF11816 DUF3337: Domain of un 24.2 1.6E+02 0.0035 32.4 6.1 61 32-92 251-329 (331)
192 COG0089 RplW Ribosomal protein 24.0 2.5E+02 0.0054 26.3 6.3 40 27-66 20-60 (94)
193 KOG4146 Ubiquitin-like protein 23.9 5.5E+02 0.012 24.4 8.4 74 17-91 3-98 (101)
194 PRK07696 sulfur carrier protei 23.3 3.3E+02 0.0071 23.3 6.5 56 27-89 6-62 (67)
195 cd01789 Alp11_N Ubiquitin-like 22.7 13 0.00028 32.9 -2.1 30 111-140 16-46 (84)
196 PF14807 AP4E_app_platf: Adapt 22.5 2E+02 0.0043 27.2 5.5 64 30-94 22-89 (104)
197 PTZ00380 microtubule-associate 22.0 1.4E+02 0.003 29.1 4.4 62 29-90 41-105 (121)
198 PF00276 Ribosomal_L23: Riboso 21.8 1.7E+02 0.0036 26.6 4.7 41 29-69 21-62 (91)
199 CHL00030 rpl23 ribosomal prote 20.5 2.5E+02 0.0054 26.0 5.6 39 28-66 19-58 (93)
200 PF14560 Ubiquitin_2: Ubiquiti 20.3 11 0.00023 33.2 -3.2 34 108-141 14-48 (87)
No 1
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-39 Score=370.83 Aligned_cols=597 Identities=20% Similarity=0.173 Sum_probs=384.7
Q ss_pred EEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecCCCCCC--CC
Q 004840 22 KIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSSS--DG 99 (728)
Q Consensus 22 tVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~s~ss--s~ 99 (728)
..|++.-..+...+.+..++...|.+|...+||+...++|+|-|..++++..+..|+.+.....+..++.+..... +.
T Consensus 328 l~~~l~~p~~~~~~~~~~~~~~~~p~~~~qtgipi~~~~l~~vg~~~n~d~P~s~~~~e~~~~~p~~~aspa~s~~~~~t 407 (1143)
T KOG4248|consen 328 LRCNLACPPPRHLHVVRPMSHYTTPMVLQQTGIPIQINVLTTVGMTGNGDRPPSTPNAEAPPPGPGQAASPAPSSTNVET 407 (1143)
T ss_pred hhhcccCCCCceeeecchhhhccCceeeecccccccccceeeecccccCCCCCCccccccCCCCCccccCcCccccCCCC
Confidence 3455555667777777888888899999999999999999999999999999999999999999997775544322 10
Q ss_pred CCCCC--------CCCCcc-ccccccccchhccccccccCCCCchhHHHHHHhhhccCCCCCCCCCC---Cccccccccc
Q 004840 100 THNLP--------GTSRSH-GSHVAPSVVIETFNLPDRGDGVPSEISQIVSAVLGSFGLSNIGSGGG---GIDLREHAMQ 167 (728)
Q Consensus 100 ~qIfV--------ltGkTi-tl~V~pSdTVesLK~kIQ~EGIPpDQQRLIFAvL~sfG~~~~~~~~~---g~~~~~~~~~ 167 (728)
.+-++ ..+... ...+.......-++...+-+++-..+-....++...||..+.+.+++ |....++..+
T Consensus 408 p~qGatt~~~~~~~~~~~~~~~~iSh~s~~dv~~~~~qle~i~~q~~Gv~~~~~~~lg~~Ga~~~na~~~~~~~l~Pthq 487 (1143)
T KOG4248|consen 408 PAQGATTPGPAGTPIGSHPRVIRISHQSVEDVVRMHMQLEDIGTQLGGVPGARTAVLGSPGAGQTNAQQVPGFDLAPTHQ 487 (1143)
T ss_pred cccCCcCCCCCCCCCcccccceeccchhhhhHHHHHHHHHhhhhcccCCcccccccccccccCCCccccCCCCcCCCcce
Confidence 11111 111111 22333332222222222244555555566667777777776665553 3333332333
Q ss_pred CCCccCCCCCccccCCCCCCCCCcccccCCCCC-ccccCccccCCCCCCCCCCCchhhHHHHHHHHH-----------HH
Q 004840 168 RPERTSDAGSALDSAHQQPEQGGTRFQSNRPHS-AFGIPTAISLGTLQPPVIPDSLTTLSQYLSQLR-----------HE 235 (728)
Q Consensus 168 ~~~~t~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~p~~~~~~~~~~~viPDsltTls~yl~~m~-----------~~ 235 (728)
-..+..+++-+.++++..+... ..+. ...+.. -.-+..-|||...|+.-|+.+.+ ++
T Consensus 488 ~~~~pd~P~i~p~ssg~e~~s~-------~q~~~glstd~----S~~q~~s~~dt~~~t~Pv~~lr~~vp~~l~~~~~qv 556 (1143)
T KOG4248|consen 488 VIARPDGPGIGPFSSGGEPNSP-------TQQGAGLSTDH----SLAQMVSGPDTQLTTIPVLVLRGCVPGMLPPPGPQV 556 (1143)
T ss_pred eecCCCCCCCCCCCCCCCCcCh-------hhhcccccccc----chhhhccCCCccceeeccchhhccchhhcCCcchhH
Confidence 3333333433334322211111 1100 111110 00122234444444444444444 22
Q ss_pred hhcc--CCCCCCCCCCCCCcccCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChh
Q 004840 236 FDGI--GRGGGNNTAATNSTIEGNTNSASHPGSLQEGLPMPASLAEVMQSTRQMLIEQSAECLHQLARQLENQANVTDPS 313 (728)
Q Consensus 236 f~~~--~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~lpt~~~L~~v~~~t~qll~~~a~~~Ls~la~qL~~~~~~tD~~ 313 (728)
+.+. ++...+|+ +.......+.+|.+++|++|+.+|+|||+|..++||++|+++|++.++|+||.
T Consensus 557 ~~a~d~~nq~~~n~-------------q~p~~~~~e~i~rp~hla~Ll~st~qll~g~~A~~lSnis~~lsd~vsvSdPs 623 (1143)
T KOG4248|consen 557 ASALDTGNQADTNG-------------QAPGGPAEEPIARPPHLAELLFSTRQLLSGEPAGCLSNISGVLSDTVSVSDPS 623 (1143)
T ss_pred HHhhhccccccccc-------------cCCCCCccccCCCchHHHHHHHHHHHHHhcCCcccccCccccccCCcccCCCc
Confidence 2222 32222222 22335667899999999999999999999999999999999999999999999
Q ss_pred hhhhHH--hHHHHHhHHHHHHHHHHHhhccceeEeecCCCCcccccccCCeeEeCCCCCCCCC--CCCCCCCCcccccCC
Q 004840 314 LRTSIQ--TTAWSAGLLLHNLGAFLLELGRTTMTLRLGQTPSEAVVNAGPAVFISPSGPNPLM--PLPFQPGTSFGAIPM 389 (728)
Q Consensus 314 ~R~~iQ--~~a~~~G~~~q~LGa~lleLGRttmtLrmg~tp~ea~vn~gpAvfispsGpNpim--p~p~q~g~~fg~~~~ 389 (728)
+|+++| +++++.|.+|+|||..||||||||+|++||+| .+++|+||||||+|+||+| ||+.+--..|=.+-.
T Consensus 624 aral~Q~~t~~~qsgs~le~lG~~ll~lgpaTst~tmgpS----~~~ag~av~iSP~Gr~p~~~t~les~~p~l~Tsi~s 699 (1143)
T KOG4248|consen 624 ARALRQGMTRFLQSGSLLEHLGIPLLELGPATSTQTMGPS----EPDAGIAVFISPGGRRPNRRTPLESHSPELFTSIRS 699 (1143)
T ss_pred chhhhhhhhhhhhhcccccCCCCccccCCCccccccCCCC----ccCcCcccccCCCCCCCcccCcccccCchhhccccc
Confidence 999999 99999999999999999999999999999999 7999999999999999999 777665554433322
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceEeecC-----------CcccCCCCccccccccCCCCCCCCccccCCCCCCCCcccc
Q 004840 390 GSVQPGSGLVNGRSAGFLPRRIDIQIRRG-----------SSMVGSNAIQEERSNTQQAPGQGNTATASGTDNLGSQATT 458 (728)
Q Consensus 390 g~~~~~~~~~~~~~~~~~pR~i~I~i~~g-----------~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 458 (728)
|... -++...|...++|+++|+|+.| .+....++++.+..+++.+..++.|+.+...
T Consensus 700 ~~~~---~~Ta~~g~~ta~a~ssv~~~agpa~i~~~~~vgn~~~~~~~~q~d~sgtt~s~~sttPS~p~~t--------- 767 (1143)
T KOG4248|consen 700 GNHI---VLTAPRGSLTARAGSSVSTEAGPAGIQRLSGVGNIFEPGADGQLDFSGTTDSPLSQTPSMPDVT--------- 767 (1143)
T ss_pred cccc---ccccccccccccccccccccCCCCCceeeeccccccCCCCCCccCCCcccCCccccCCCCCCcc---------
Confidence 2100 1222344445666666655555 4455555666666666555555555332221
Q ss_pred cCCCCCCCCCCCCeeeeeeeeeeeecccCCCCCCCCC-CCCCceeeeeeeeeeeeeccCCCCCCCCCCCCCCCCCCCccc
Q 004840 459 RNSDGSSSAGESGVRVVPVRTMVAPVPAPFGRLPSDS-SSNPVSLYYPVLGRFQHVASGLVSGEQGHQVSGEHHPAGLQT 537 (728)
Q Consensus 459 ~~~~~~~~~~~~~~r~~p~rt~vaa~~~~~~~~ps~s-~~~~~g~~~pvl~r~q~~~~~~~~~~~~~q~~~e~~~~g~~~ 537 (728)
-+|.+..++++|| ....+-.++|..-+++|+-.--+ .--..+++.
T Consensus 768 ------------------------~l~t~~~~~~~ds~lq~qm~~~~~dv~n~g~~Q~p~~----------ia~~~a~~~ 813 (1143)
T KOG4248|consen 768 ------------------------NLPTGHPQPLQDSTLQPQLRSFFPDVYNGGHVQIPTP----------IAIRMALDT 813 (1143)
T ss_pred ------------------------cccCCCCCCCCchhhhhhhhhhchhhhccccccccch----------hhhhhhhhh
Confidence 4456667778887 77888889998888885422111 111333445
Q ss_pred cCCCCCCCc-ccccCCCCCCCCC-CCCCCcccccccCCceeeeccccCCCCCCChhhHhHhhhhHHHHHHhhCCCCceee
Q 004840 538 EQPSVPDSI-GQQNAEDPARNGS-LANPNSRQQEASHSHSVNVGTLSTAGTQDNQESERQIRSGVLQLLRNLFPGGEIHV 615 (728)
Q Consensus 538 ~~~~~~~~~-~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~n~~~~~g~~~~~~~~~~~~~~~~q~l~~~~~~~~~~~ 615 (728)
..+++-+.. +....-..+|.++ ..+|+.|- .+ ++.++|.|+++.|-|- +.-.
T Consensus 814 ~~~~l~~l~~e~~s~~a~~~~~ds~~~pg~~l-----------------------~s--Er~N~i~q~vkpltps-~~aa 867 (1143)
T KOG4248|consen 814 LGTGLEELVRESFSLVAVQRGVDSIIRPGLRL-----------------------LS--ERFNSIAQHVKPLTPS-GFAA 867 (1143)
T ss_pred hccchhhhccccccccCcccCcCcccccccch-----------------------HH--HHhhhhhhccccCCcc-ccch
Confidence 566666666 2333333334444 45555554 33 4789999999999887 5566
Q ss_pred cCCCccCCCCCCcccccccccccccccCCCc--cccccc------CchhhHHHH--HHHhhhccccccCCCCCCCCCccC
Q 004840 616 ENGGLHGTASDSVPEHAATFRDRVVSSTGSS--AAEASA------TDEGIFLSN--LLHQIMPFISQHSSAEPTVTPLED 685 (728)
Q Consensus 616 ~~~~~q~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~------~~eg~~~s~--~l~~imp~isq~~~~~~~~~~~~~ 685 (728)
.|...+..+....+..+... .|.+ |-+|.- +-||.|.|. ++.+||+||.|.++..-. .+.
T Consensus 868 g~~e~~nq~~pe~~a~t~l~-------lgv~n~E~~~rq~~~~~~~~~g~~~sl~~frqq~mq~l~~~va~si~---a~t 937 (1143)
T KOG4248|consen 868 GLLELCNQALPECLALTLLC-------LGVANAELAPRQNGRIRRMSEGVNPSLVSFRQQMMQFLLQVVAESIP---AGT 937 (1143)
T ss_pred hhHHHHhccchhhHHHHHHh-------hcccchhhhhhhhcccccccccccccHHHHHHHHHHHHHHhhhccCc---ccc
Confidence 77777777777776655555 5544 545542 339999887 999999999999987665 556
Q ss_pred CcccccccCCCCCCCCCC---CCcc------cccccCCCCCCCCCcccccCC
Q 004840 686 TNAFEHRMSQDSSTHAGS---SSVR------TSRRQSDSEPSAPNPKRQKME 728 (728)
Q Consensus 686 ~~~~~~~~~~~ss~~~~~---s~~~------ts~~~~~~~~~~pnskrq~~e 728 (728)
...-+++...+.|.++.+ +.+. -+++.-.+.++++-+|+|+||
T Consensus 938 ~t~~~sn~rv~~s~q~~~e~~t~v~~~~~a~p~sq~~~~sp~~~tsm~Q~te 989 (1143)
T KOG4248|consen 938 DTGLGSNRRVGDSPQALPEEPTEVQGAERASPESQRENASPAPGTSMEQATE 989 (1143)
T ss_pred hhhccccccccccccccccccchhccccccCcccccccCCCCCcccHHHHhh
Confidence 666777777888777753 3333 255566788899999999986
No 2
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.69 E-value=5.5e-17 Score=137.26 Aligned_cols=74 Identities=35% Similarity=0.564 Sum_probs=71.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
|+|+||+.+|+++.++|++++||.+||++|++++|+++++|||+|+||.|+|+.+|++|+|+++++|||+++.|
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~~ 74 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRPP 74 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999853
No 3
>PTZ00044 ubiquitin; Provisional
Probab=99.64 E-value=7.8e-16 Score=129.86 Aligned_cols=74 Identities=34% Similarity=0.490 Sum_probs=72.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
|+|+||+++|++++++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.+|++|+|+++++|||+++..
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLR 74 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999864
No 4
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.63 E-value=6.5e-16 Score=130.91 Aligned_cols=72 Identities=31% Similarity=0.377 Sum_probs=69.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
|+|+||.. ++++++|++++||.+||++|++++|+|+++|+|+|+||.|+|+++|++|+|+++++|||+++..
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~ 72 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLL 72 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 78999984 7899999999999999999999999999999999999999999999999999999999999875
No 5
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.63 E-value=7.7e-16 Score=133.03 Aligned_cols=74 Identities=31% Similarity=0.488 Sum_probs=70.8
Q ss_pred EEEEEEeCCCcE-EEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 19 IEIKIKTLDSQT-YTLR-VDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 19 MqItVKtLdGKt-~tLe-VdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
|+|+||+++|++ +.++ +++++||.+||++|++++|+++++|||+|+||.|+|+.+|++|+|+++++|||++|..
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 799999999997 6895 8999999999999999999999999999999999999999999999999999999864
No 6
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.62 E-value=1.7e-15 Score=127.88 Aligned_cols=74 Identities=39% Similarity=0.641 Sum_probs=72.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGV--LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGI--PpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
|+|+||+.+|+++.++|++++||.+||++|++++++ ++++|+|+|+|+.|+|+.+|++|+|++|++|+++++++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 789999999999999999999999999999999999 99999999999999999999999999999999999876
No 7
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.61 E-value=2.4e-15 Score=125.74 Aligned_cols=74 Identities=32% Similarity=0.555 Sum_probs=71.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
|+|+||..+|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|++|++|||+++..
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~ 74 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALR 74 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999864
No 8
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.61 E-value=1.9e-15 Score=129.41 Aligned_cols=72 Identities=24% Similarity=0.296 Sum_probs=69.8
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 18 sMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
+|.|+||++.|+.+.++|++++||.+||++|+++.++++++|||+|.|+.|+|+.+|++|||++|++|||..
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 589999999999999999999999999999999999999999999999999999999999999999999974
No 9
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.60 E-value=3.2e-15 Score=135.77 Aligned_cols=76 Identities=32% Similarity=0.482 Sum_probs=73.5
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
..|+|+||+++|+++.++|++++||.+||++|+++.|+++++|||+|+||.|+|+++|++|+|+++++|||+++..
T Consensus 26 ~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~ 101 (103)
T cd01802 26 DTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMR 101 (103)
T ss_pred CCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999864
No 10
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.60 E-value=3.1e-15 Score=123.91 Aligned_cols=72 Identities=61% Similarity=0.871 Sum_probs=70.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEe
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR 90 (728)
|+|+||+++|+++++++++++||.+||++|++++|++++.|+|+|+|+.|+|+.+|++|+|++|++|||++|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999875
No 11
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.59 E-value=3.5e-15 Score=124.76 Aligned_cols=74 Identities=38% Similarity=0.587 Sum_probs=71.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|+|+|+|+.|+|+.+|++|+|++|++|||+++..
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999864
No 12
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.59 E-value=3e-15 Score=126.90 Aligned_cols=72 Identities=24% Similarity=0.355 Sum_probs=69.8
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 21 ItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
|+||+++|++++++|++++||.+||++|+++.|+|+++|+|+|+||.|+|+++|++|+|+++++|+|+++..
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~ 72 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLR 72 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999864
No 13
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.59 E-value=2.6e-15 Score=125.64 Aligned_cols=70 Identities=29% Similarity=0.456 Sum_probs=68.0
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEe
Q 004840 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (728)
Q Consensus 21 ItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR 90 (728)
|+||+++|+++.++|++++||.+||++|++++|+++++|+|+|+|+.|+|+++|++|+|+++++|||+.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999875
No 14
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.57 E-value=4.3e-15 Score=126.02 Aligned_cols=69 Identities=25% Similarity=0.367 Sum_probs=67.1
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 21 ItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
++||.++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.+|.+|+|+++++|||++
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 578999999999999999999999999999999999999999999999999999999999999999986
No 15
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.57 E-value=6.8e-15 Score=126.65 Aligned_cols=74 Identities=23% Similarity=0.322 Sum_probs=70.9
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 18 sMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
.|+|+||..+|+.++++|++++||.+||++|+++.++++++|||+|+||.|+|+ +|++|||++|++|||+....
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~ 74 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVE 74 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecc
Confidence 389999999999999999999999999999999999999999999999999999 99999999999999998764
No 16
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.56 E-value=9.3e-15 Score=125.92 Aligned_cols=74 Identities=31% Similarity=0.424 Sum_probs=71.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE--EeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRL--ICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRL--IF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
|+|+||.++|+++.++|++++||.+||++|++++++++++||| +|+|+.|+|+.+|++|||++|++|||++++-
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~~ 78 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQNC 78 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 8999999999999999999999999999999999999999999 8999999999999999999999999999854
No 17
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.54 E-value=1.7e-14 Score=121.16 Aligned_cols=71 Identities=30% Similarity=0.493 Sum_probs=67.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEe
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR 90 (728)
|+|+||+.+|+ +.++|++++||.+||++|++++++++++|+|+|+||.|+|+++|++|+|+++++|||++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 57999999997 589999999999999999999999999999999999999999999999999999999975
No 18
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.52 E-value=3e-14 Score=117.74 Aligned_cols=68 Identities=50% Similarity=0.761 Sum_probs=65.9
Q ss_pred EeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEec
Q 004840 24 KTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 24 KtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~ 91 (728)
|+++|+.+.++|++++||.+||++|++++++++++|+|+|+|++|+|+.+|.+|+|++|++|+|++++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 67899999999999999999999999999999999999999999999999999999999999999875
No 19
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.51 E-value=3.1e-14 Score=124.45 Aligned_cols=71 Identities=27% Similarity=0.340 Sum_probs=64.4
Q ss_pred EEEEEEeCCCcEEE--EEecCCCCHHHHHHHHHHHhC--CCCCCeEEEeCCeecCCcccccccc--ccCCcEEEEEE
Q 004840 19 IEIKIKTLDSQTYT--LRVDKQVPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAYH--VEDGHTLHMVV 89 (728)
Q Consensus 19 MqItVKtLdGKt~t--LeVdpsdTV~dLKekIeektG--IPpeqQRLIF~GKvLkDd~TLsdYG--IkdGsTLhLVl 89 (728)
|.|+||+++++++. +++++++||.+||++|++..+ .++++|||||+||+|+|+.+|++|. +.++++||||+
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 78999999999955 555899999999999999874 4579999999999999999999996 99999999986
No 20
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.48 E-value=7.5e-14 Score=118.11 Aligned_cols=68 Identities=31% Similarity=0.516 Sum_probs=64.7
Q ss_pred EEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCc-cccccccccCCcEEEEE
Q 004840 21 IKIKTL-DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 21 ItVKtL-dGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd-~TLsdYGIkdGsTLhLV 88 (728)
|+||+. +|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+ .+|++|+|++|++|||-
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578999 899999999999999999999999999999999999999999987 68999999999999983
No 21
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.47 E-value=1.1e-13 Score=114.71 Aligned_cols=70 Identities=30% Similarity=0.455 Sum_probs=67.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
|+|+||+. |+.+.++|++++||.+||++|++++|+++++|||+|+|+.|+|+.+|++|+|++|++|+|+.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 68999996 99999999999999999999999999999999999999999999999999999999999974
No 22
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.45 E-value=1.5e-13 Score=149.42 Aligned_cols=76 Identities=29% Similarity=0.530 Sum_probs=73.3
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC---CCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecCCC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG---VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektG---IPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~s 94 (728)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +++++|||||+||+|+|+++|++|+|+++++|+|++++++.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~k~ 79 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKPKT 79 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccCCC
Confidence 79999999999999999999999999999999998 99999999999999999999999999999999999988765
No 23
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.44 E-value=2.1e-13 Score=116.84 Aligned_cols=70 Identities=30% Similarity=0.443 Sum_probs=66.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe---CCeecCCccccccccccCCcEEEEEE
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC---RGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF---~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
|.|+||+ .|++|.++|++++||.+||++|++++++|+++|||+| +|+.|+|+.+|++|+|++|++|+|+-
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence 5789999 7899999999999999999999999999999999996 99999999999999999999999974
No 24
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.42 E-value=2.8e-13 Score=149.48 Aligned_cols=79 Identities=35% Similarity=0.579 Sum_probs=74.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecCCCCC
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSS 96 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~s~s 96 (728)
..++|+||+.++ ++.|.|..+.||.+||++|..++++++++++|||+||+|||+++|..|||+||+|||||+|....+.
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~~~~ 92 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQPRPT 92 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCCCCC
Confidence 569999999887 8999999999999999999999999999999999999999999999999999999999999775543
No 25
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.42 E-value=3.5e-13 Score=115.11 Aligned_cols=67 Identities=27% Similarity=0.487 Sum_probs=64.7
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 26 LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 26 LdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
++|++++|+|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|+|+++++|||+++..
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~ 71 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKER 71 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecC
Confidence 5789999999999999999999999999999999999999999999999999999999999999875
No 26
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.1e-13 Score=115.29 Aligned_cols=70 Identities=33% Similarity=0.561 Sum_probs=68.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEE
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLV 88 (728)
|.|+||++.+|.+.|++++.++|+.+|++|+++.||||.+|||+|.||.+.|+.+-.+|++.-|++|||+
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999985
No 27
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.38 E-value=2.1e-12 Score=113.36 Aligned_cols=79 Identities=20% Similarity=0.407 Sum_probs=75.3
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 14 ~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
+....|.|+|++.+|+.+.++|.+++++..||++++++.|+++++|||+|+|+.|+++.|+.+|+|+++++|++++++.
T Consensus 7 ~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~ 85 (87)
T cd01763 7 EISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQT 85 (87)
T ss_pred CCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecc
Confidence 4456899999999999999999999999999999999999999999999999999999999999999999999999864
No 28
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.33 E-value=3.1e-12 Score=102.69 Aligned_cols=64 Identities=53% Similarity=0.788 Sum_probs=61.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCc
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGH 83 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGs 83 (728)
|+|+||+.+ +.+.++|++++||.+||++|+.++++++++|+|+|+|+.|+|+.+|.+|+|++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 689999998 7999999999999999999999999999999999999999999999999999874
No 29
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=9.3e-13 Score=127.25 Aligned_cols=76 Identities=37% Similarity=0.552 Sum_probs=73.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecCCC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~s 94 (728)
|.|+|+.+.++++.++|..++||..+|++|+++++||+++|||||.|+.|+|+.+|+||+|+.-++|||+++....
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg 76 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999997643
No 30
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3.4e-13 Score=123.57 Aligned_cols=74 Identities=36% Similarity=0.581 Sum_probs=71.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
|+++++++.|++++++|++++||..||.+|..++|+|+++|+|+|+||.|+|..||++|+|+.-+|||++.|+.
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~ 74 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999876
No 31
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.23 E-value=2.4e-11 Score=104.79 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=61.8
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecC-Ccccccccccc-CCcEEEEEE
Q 004840 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLK-DDQLLSAYHVE-DGHTLHMVV 89 (728)
Q Consensus 20 qItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLk-Dd~TLsdYGIk-dGsTLhLVl 89 (728)
.|.=|...+++++|+|++++||.+||++|++++|+|+++||| |.|+.|. |+++|++|+|+ +|+++||.+
T Consensus 4 ~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 4 SVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 344455668999999999999999999999999999999999 9999985 77999999998 889999975
No 32
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.19 E-value=1.7e-11 Score=106.45 Aligned_cols=54 Identities=35% Similarity=0.493 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHHh--CCC-CCCeEEEeCCeecCCccccccccccCCcEEEEEEe
Q 004840 37 KQVPVPALKEQIASVT--GVL-SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (728)
Q Consensus 37 psdTV~dLKekIeekt--GIP-peqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR 90 (728)
.++||.+||++|+++. +++ +++|||||+||.|+|+++|++|+|++|++|||+.+
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~~ 75 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILRK 75 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEeC
Confidence 4789999999999996 575 89999999999999999999999999999999863
No 33
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.18 E-value=2.8e-11 Score=128.53 Aligned_cols=75 Identities=31% Similarity=0.537 Sum_probs=72.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC--CCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecCC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektG--IPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~ 93 (728)
|+|+||++++++|+|+|.+++||.++|++|+...| +|.+.|+|||+||+|+|+.+|.+|+|+++..|.|++.+.+
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence 78999999999999999999999999999999988 9999999999999999999999999999999999999876
No 34
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.17 E-value=3.9e-11 Score=111.19 Aligned_cols=79 Identities=27% Similarity=0.374 Sum_probs=68.8
Q ss_pred CcEEEEEEeCCCcEE-EEEecCCCCHHHHHHHHHHH-----hCCC--CCCeEEEeCCeecCCcccccccc------ccCC
Q 004840 17 TTIEIKIKTLDSQTY-TLRVDKQVPVPALKEQIASV-----TGVL--SEQQRLICRGKVLKDDQLLSAYH------VEDG 82 (728)
Q Consensus 17 ssMqItVKtLdGKt~-tLeVdpsdTV~dLKekIeek-----tGIP--peqQRLIF~GKvLkDd~TLsdYG------IkdG 82 (728)
..+.|+++..+|..+ .+.+.+++||.+||++|++. .++| +++|||||.||+|+|++||++|+ +...
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~ 82 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV 82 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence 568999999999766 47889999999999999944 4555 99999999999999999999999 7777
Q ss_pred cEEEEEEecCCCC
Q 004840 83 HTLHMVVRQPVPS 95 (728)
Q Consensus 83 sTLhLVlR~p~s~ 95 (728)
.|+||++|.+...
T Consensus 83 ~TmHvvlr~~~~~ 95 (113)
T cd01814 83 ITMHVVVQPPLAD 95 (113)
T ss_pred eEEEEEecCCCCC
Confidence 9999999977543
No 35
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.15 E-value=1e-10 Score=95.01 Aligned_cols=68 Identities=50% Similarity=0.751 Sum_probs=64.5
Q ss_pred EEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 22 KIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 22 tVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
+||..+|+.+.+.+.+++||.+||++|+..++++++.|+|+|+|+.|+|+.+|.+|++.++++|+++.
T Consensus 1 ~v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 1 TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred CeEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 36777899999999999999999999999999999999999999999999999999999999999975
No 36
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.08 E-value=5e-10 Score=93.68 Aligned_cols=71 Identities=28% Similarity=0.482 Sum_probs=66.3
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPp-eqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
|+|+|+..+++.+.+.|.+++++..|+++++++.+++. +..+|+|+|+.|++++|+.+|+|++|++|++++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 78999999999999999999999999999999999999 999999999999999999999999999999974
No 37
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=9.7e-10 Score=129.37 Aligned_cols=75 Identities=39% Similarity=0.654 Sum_probs=71.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecCCC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~s 94 (728)
.+|+||++|.++.+|.|...+||++||++|.++..|+.+.|||||+|++|.|++++++|+| ||.+|||+.|.++.
T Consensus 3 ~~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~ 77 (1143)
T KOG4248|consen 3 PNVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ 77 (1143)
T ss_pred cceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence 3599999999999999999999999999999999999999999999999999999999999 99999999996654
No 38
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.88 E-value=3.1e-09 Score=96.99 Aligned_cols=63 Identities=25% Similarity=0.250 Sum_probs=58.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCC-ccccccccccCCcEEEEEEecC
Q 004840 30 TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKD-DQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 30 t~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkD-d~TLsdYGIkdGsTLhLVlR~p 92 (728)
...+.|++++||.+||.+|.++++++|.+|+|+|.|+.|.| ..||++|||..+++|+|.++.|
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP 79 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEP 79 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecCC
Confidence 45688999999999999999999999999999999999965 4899999999999999999766
No 39
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.88 E-value=1e-08 Score=89.98 Aligned_cols=74 Identities=26% Similarity=0.500 Sum_probs=61.5
Q ss_pred EEEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE-EeCCe-----ec-CCccccccccccCCcEEEEEEe
Q 004840 19 IEIKIKTLD-SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRL-ICRGK-----VL-KDDQLLSAYHVEDGHTLHMVVR 90 (728)
Q Consensus 19 MqItVKtLd-GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRL-IF~GK-----vL-kDd~TLsdYGIkdGsTLhLVlR 90 (728)
+.|+|+... ....+.++++.+||.+||++|+..+|+++..||| +|.|+ .| +|+++|++|++++|++||++-.
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 456666533 3445567999999999999999999999999999 58887 45 6778999999999999999875
Q ss_pred cC
Q 004840 91 QP 92 (728)
Q Consensus 91 ~p 92 (728)
.|
T Consensus 82 ~p 83 (84)
T cd01789 82 SG 83 (84)
T ss_pred CC
Confidence 43
No 40
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.79 E-value=3.2e-08 Score=79.04 Aligned_cols=72 Identities=39% Similarity=0.602 Sum_probs=68.4
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 21 ItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
++++...|+.+.+.+.+..+|..+|.+|+.+.+++..+|+|.|.|+.|.|+.+|.+|+|..+.+++|+.+..
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 577888999999999999999999999999999999999999999999999999999999999999998764
No 41
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.73 E-value=4.5e-08 Score=85.70 Aligned_cols=74 Identities=28% Similarity=0.524 Sum_probs=59.7
Q ss_pred EEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC----C---eec-CCccccccccccCCcEEEEE
Q 004840 19 IEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR----G---KVL-KDDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 19 MqItVKtLdG--Kt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~----G---KvL-kDd~TLsdYGIkdGsTLhLV 88 (728)
++|+|..... +..+.++++++||.+||.+|+..+|++++.|+|.+. + ..| +|.++|.+|++++|++||+.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 5677777554 488899999999999999999999999999999875 1 223 56799999999999999998
Q ss_pred EecC
Q 004840 89 VRQP 92 (728)
Q Consensus 89 lR~p 92 (728)
-..|
T Consensus 82 D~~p 85 (87)
T PF14560_consen 82 DTNP 85 (87)
T ss_dssp E-T-
T ss_pred eCCC
Confidence 7665
No 42
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.66 E-value=1.4e-07 Score=87.46 Aligned_cols=77 Identities=32% Similarity=0.500 Sum_probs=60.0
Q ss_pred cEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhC-------CCCCCeEEEeCCeecCCccccccccccCCc------
Q 004840 18 TIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTG-------VLSEQQRLICRGKVLKDDQLLSAYHVEDGH------ 83 (728)
Q Consensus 18 sMqItVKtLdGK-t~tLeVdpsdTV~dLKekIeektG-------IPpeqQRLIF~GKvLkDd~TLsdYGIkdGs------ 83 (728)
.++|+++..+|+ +..+.+++.+||.+||++|..... ..+...||||.||+|+|..+|++|++..|.
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 588999999999 778999999999999999987642 234789999999999999999999987655
Q ss_pred EEEEEEecCCC
Q 004840 84 TLHMVVRQPVP 94 (728)
Q Consensus 84 TLhLVlR~p~s 94 (728)
++||+++....
T Consensus 82 vmHlvvrp~~~ 92 (111)
T PF13881_consen 82 VMHLVVRPNAP 92 (111)
T ss_dssp EEEEEE-SSSS
T ss_pred EEEEEecCCCC
Confidence 78999886543
No 43
>PLN02560 enoyl-CoA reductase
Probab=98.55 E-value=1.3e-07 Score=101.08 Aligned_cols=71 Identities=25% Similarity=0.360 Sum_probs=63.0
Q ss_pred EEEEEEeCCCcEE---EEEecCCCCHHHHHHHHHHHhCC-CCCCeEEEeC---C----eecCCccccccccccCCcEEEE
Q 004840 19 IEIKIKTLDSQTY---TLRVDKQVPVPALKEQIASVTGV-LSEQQRLICR---G----KVLKDDQLLSAYHVEDGHTLHM 87 (728)
Q Consensus 19 MqItVKtLdGKt~---tLeVdpsdTV~dLKekIeektGI-PpeqQRLIF~---G----KvLkDd~TLsdYGIkdGsTLhL 87 (728)
|+|+||..+||.+ +|+|++++||++||++|+++.++ ++++|||++. | +.|+|+++|++||+++|++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 6899998888887 79999999999999999999986 8999999982 3 4889999999999999999877
Q ss_pred EE
Q 004840 88 VV 89 (728)
Q Consensus 88 Vl 89 (728)
-.
T Consensus 81 kD 82 (308)
T PLN02560 81 KD 82 (308)
T ss_pred Ee
Confidence 43
No 44
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.36 E-value=1.7e-06 Score=64.72 Aligned_cols=67 Identities=39% Similarity=0.544 Sum_probs=61.3
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 23 VKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
|+..+++...+.+.+.+||.+||++|..+++++++.++|+++|+.+++...+.+|.+.++++|+++.
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3444788889999999999999999999999999999999999999999988999999999999874
No 45
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.35 E-value=9.5e-07 Score=75.98 Aligned_cols=68 Identities=31% Similarity=0.359 Sum_probs=54.3
Q ss_pred EEEEEeCCCcEE-EEEe-cCCCCHHHHHHHHHHHhC-CCCCCeEEE--eCCeecCCccccccccccCCcEEEE
Q 004840 20 EIKIKTLDSQTY-TLRV-DKQVPVPALKEQIASVTG-VLSEQQRLI--CRGKVLKDDQLLSAYHVEDGHTLHM 87 (728)
Q Consensus 20 qItVKtLdGKt~-tLeV-dpsdTV~dLKekIeektG-IPpeqQRLI--F~GKvLkDd~TLsdYGIkdGsTLhL 87 (728)
+|.++....+.+ .+++ .++.||.+||+.|+...+ +++++|||. +.|+.|+|+.+|.+|||++|++||+
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 455555441333 2444 488999999999999876 578999885 8999999999999999999999887
No 46
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.33 E-value=1.6e-06 Score=81.16 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=61.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccc-------cCCcEEEEEEec
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-------EDGHTLHMVVRQ 91 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGI-------kdGsTLhLVlR~ 91 (728)
|-|.||. +..+|.+++.++.||.+||++|+.....||++|||+..+.+|+|++||+|||+ +...+|-|.+|.
T Consensus 3 vFlmIrR-~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~ 81 (119)
T cd01788 3 VFLMIRR-HKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRS 81 (119)
T ss_pred eEEEEEe-cceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEec
Confidence 3444554 34566789999999999999999999999999999977789999999999999 667888888885
No 47
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.13 E-value=8.9e-06 Score=71.20 Aligned_cols=73 Identities=21% Similarity=0.366 Sum_probs=64.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC-----eecCCccccccccccCCcEEEEEEecC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG-----KVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~G-----KvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
++|+||......+++.|+|..+|.+||++|....+++- .|||.|.. +.|.+.++|++|||..+..|.|+.+.+
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~p 78 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETFP 78 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecCC
Confidence 57999999999999999999999999999999998874 99999852 457899999999999988888887654
No 48
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.89 E-value=2.4e-05 Score=68.84 Aligned_cols=71 Identities=20% Similarity=0.322 Sum_probs=43.9
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---eec--CCccccccccccCCcEEEEE
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KVL--KDDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~G---KvL--kDd~TLsdYGIkdGsTLhLV 88 (728)
..|.|.|+..+| .+.|++++++|+.+||++|++.++++.+.|.|..+- +.| .+.++|+++||+.|+.|+|.
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 468999999764 567899999999999999999999999999886432 344 46799999999999999874
No 49
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00031 Score=64.49 Aligned_cols=76 Identities=18% Similarity=0.410 Sum_probs=71.0
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEec
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~ 91 (728)
...++|+|+..++....+.|..+.+...|++..+++.|+.....|++|+|+.+++.+|-.++++++++.|.++...
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q 93 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQ 93 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeec
Confidence 4678888988778888999999999999999999999999999999999999999999999999999999998754
No 50
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=6e-05 Score=84.25 Aligned_cols=74 Identities=24% Similarity=0.375 Sum_probs=68.4
Q ss_pred cEEEEEEeCCCcEEEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 18 TIEIKIKTLDSQTYTLR-VDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 18 sMqItVKtLdGKt~tLe-VdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
...|.||+ .|+.|.++ ++.++|+..||.+|+..+|++|++||++++|+.|+|+-.+...+|+++.+|+|+-...
T Consensus 3 ~~~v~VKW-~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e 77 (473)
T KOG1872|consen 3 SDTVIVKW-GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE 77 (473)
T ss_pred cceEeeee-cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence 35789999 58999987 9999999999999999999999999999999999999999999999999999998644
No 51
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=1.2e-05 Score=74.68 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=38.1
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHhh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAvL 144 (728)
.+||+++++|+++++|++||.+|+ ++|||+++|+|+|+.=
T Consensus 8 ~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k 48 (128)
T KOG0003|consen 8 LTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (128)
T ss_pred eeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhccc
Confidence 799999999999999999999999 9999999999999754
No 52
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=97.67 E-value=5.2e-06 Score=75.95 Aligned_cols=64 Identities=11% Similarity=0.119 Sum_probs=55.8
Q ss_pred cccccCCcEEEEEEecCCCCCCCCCCCCC--CCCCccccccccccchhccccccc-cCCCCchhHHHHHHhh
Q 004840 76 AYHVEDGHTLHMVVRQPVPSSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (728)
Q Consensus 76 dYGIkdGsTLhLVlR~p~s~sss~~qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAvL 144 (728)
.|.+.+-.++|++++.. +.|++++ ..|+++.++|++++||.+||.+|+ ++|||+++|+|+|++.
T Consensus 9 ~~~~~~~~~~~~~~~~~-----~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk 75 (103)
T cd01802 9 FFNEDNMGPFHYKLPFY-----DTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNM 75 (103)
T ss_pred ccccCCcceeEEeeccC-----CCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCE
Confidence 45667778999999864 4688887 789999999999999999999999 9999999999998754
No 53
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=2.1e-05 Score=77.01 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=42.6
Q ss_pred CCCCC--CCCCccccccccccchhccccccc-cCCCCchhHHHHHHhhh
Q 004840 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (728)
Q Consensus 100 ~qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAvL~ 145 (728)
|+||| +.+++++++|..+++|+++|.+|| ++|||+|||||||+...
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~q 49 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 49 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcc
Confidence 45677 889999999999999999999999 99999999999999875
No 54
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=1.7e-05 Score=67.05 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=38.9
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHhhh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAvL~ 145 (728)
+++|.+.++++++|.|+.+|+.|+ ++||||.+|||+|+.-.
T Consensus 8 Lt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkq 49 (70)
T KOG0005|consen 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQ 49 (70)
T ss_pred eccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhcccc
Confidence 899999999999999999999999 99999999999998754
No 55
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=4.6e-05 Score=65.26 Aligned_cols=70 Identities=26% Similarity=0.347 Sum_probs=62.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEE
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLV 88 (728)
+++.+...-||+..+...+++||.++|+.|+..+|..++..+|--.+.+++|.-+|++|.|.+|..+.|.
T Consensus 2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred ceehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 5666766679999999999999999999999999999999888877778899999999999999988775
No 56
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00015 Score=77.82 Aligned_cols=72 Identities=24% Similarity=0.364 Sum_probs=61.4
Q ss_pred EEEEEEeC---CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEe
Q 004840 19 IEIKIKTL---DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (728)
Q Consensus 19 MqItVKtL---dGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR 90 (728)
|.+.|..- ....++|+|+.+..|.+||+.++...|+|+++.|+||.||.|.|+.++..+.+..-+.+|+++-
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~l 75 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLL 75 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhcc
Confidence 34555543 1345778999999999999999999999999999999999999999999999988888888843
No 57
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=97.11 E-value=2.7e-05 Score=66.21 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=37.1
Q ss_pred CCCCCCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 101 HNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 101 qIfVltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
++++-++++++++|++++||++||.+|+ ++|||+++|+|+|+.
T Consensus 2 qi~vk~~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~G 45 (74)
T cd01793 2 QLFVRAQNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAG 45 (74)
T ss_pred EEEEECCCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECC
Confidence 3444345778999999999999999999 999999999999874
No 58
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.06 E-value=0.0016 Score=56.51 Aligned_cols=70 Identities=24% Similarity=0.363 Sum_probs=52.2
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---C---CeEEE-eCCeecCCccccccccccCCcEEEE
Q 004840 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS---E---QQRLI-CRGKVLKDDQLLSAYHVEDGHTLHM 87 (728)
Q Consensus 18 sMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPp---e---qQRLI-F~GKvLkDd~TLsdYGIkdGsTLhL 87 (728)
.++|+|...+++.+.+.+..+.+|.+|...|.+..+.+. . ..+|. -+|..|+++++|++|+|.+|+.|+|
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 367888886578999999999999999999999877633 2 35666 6899999999999999999999987
No 59
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=96.79 E-value=0.0001 Score=62.95 Aligned_cols=40 Identities=10% Similarity=0.044 Sum_probs=36.9
Q ss_pred CCCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 104 PGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 104 VltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
..+|+++.++|++++||++||.+|+ .+|+|+++|+|+|++
T Consensus 5 ~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G 45 (70)
T cd01794 5 LSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSG 45 (70)
T ss_pred cCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECC
Confidence 3689999999999999999999999 999999999998764
No 60
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=96.79 E-value=8.3e-05 Score=63.17 Aligned_cols=40 Identities=15% Similarity=0.061 Sum_probs=36.9
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHhh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAvL 144 (728)
..|++++++|++++||++||.+|+ ++|+|+++|+|+|++-
T Consensus 8 ~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~ 48 (74)
T cd01807 8 LQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGK 48 (74)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCE
Confidence 578999999999999999999999 9999999999987753
No 61
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.72 E-value=0.014 Score=50.32 Aligned_cols=73 Identities=19% Similarity=0.177 Sum_probs=62.0
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEE--eCCeecCCc--cccccccccCCcEEEEE
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLI--CRGKVLKDD--QLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeq-QRLI--F~GKvLkDd--~TLsdYGIkdGsTLhLV 88 (728)
....+|.||..+|+.+...+.+++||.+|.+.|..+...+... .+|+ |-.+.|.++ ++|.++++....+|+|-
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 4568999999999999999999999999999999887776654 6775 667888544 69999999999999874
No 62
>PTZ00044 ubiquitin; Provisional
Probab=96.65 E-value=0.00012 Score=62.05 Aligned_cols=39 Identities=8% Similarity=0.207 Sum_probs=36.4
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
..|+++.+.|++++||++||.+|+ ..|+|++.|||+|+.
T Consensus 8 ~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g 47 (76)
T PTZ00044 8 LTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSG 47 (76)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECC
Confidence 689999999999999999999999 999999999999753
No 63
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=96.50 E-value=0.0049 Score=56.73 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=51.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe-CC-eecCCcccccccccc
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC-RG-KVLKDDQLLSAYHVE 80 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF-~G-KvLkDd~TLsdYGIk 80 (728)
|-|.||- ...+|.++.+++.||-+||.+++....-|+++|||.. .. ++|+|.++|+|||..
T Consensus 3 ~f~~VrR-~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 3 VFLRVRR-HKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeeeeee-cceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 4556665 3466778999999999999999999999999999986 33 678999999999763
No 64
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.00064 Score=73.68 Aligned_cols=79 Identities=27% Similarity=0.353 Sum_probs=62.2
Q ss_pred CCcEEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCC--CCCeEEEeCCeecCCcccccccccc--CCcEEEEEE
Q 004840 16 ETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVL--SEQQRLICRGKVLKDDQLLSAYHVE--DGHTLHMVV 89 (728)
Q Consensus 16 ~ssMqItVKtLdG--Kt~tLeVdpsdTV~dLKekIeektGIP--peqQRLIF~GKvLkDd~TLsdYGIk--dGsTLhLVl 89 (728)
+..+.+.||..+. +.++|..+.+.||++||..++..+--. +.+|||||.||.|.|...|.|.-+| ..+++||++
T Consensus 7 e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvc 86 (391)
T KOG4583|consen 7 EFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVC 86 (391)
T ss_pred CcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 3457788887764 456677788999999999999876533 3789999999999999999988664 457888888
Q ss_pred ecCCC
Q 004840 90 RQPVP 94 (728)
Q Consensus 90 R~p~s 94 (728)
..+..
T Consensus 87 nsk~v 91 (391)
T KOG4583|consen 87 NSKEV 91 (391)
T ss_pred CCCCC
Confidence 76544
No 65
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=96.33 E-value=0.00029 Score=60.01 Aligned_cols=38 Identities=13% Similarity=0.046 Sum_probs=35.9
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
..|++++++|++++||++||.+|+ ..|+|+++|+|+|+
T Consensus 6 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~ 44 (74)
T cd01810 6 DKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFE 44 (74)
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 689999999999999999999999 99999999999875
No 66
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=96.26 E-value=0.00032 Score=59.65 Aligned_cols=38 Identities=18% Similarity=0.359 Sum_probs=35.5
Q ss_pred CCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 106 tGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
.|+++.++|++++||++||.+|+ .+|+|+++|+|+|+.
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~G 46 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNG 46 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECC
Confidence 78889999999999999999999 999999999998763
No 67
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=96.14 E-value=0.00042 Score=60.36 Aligned_cols=38 Identities=8% Similarity=-0.002 Sum_probs=34.0
Q ss_pred CCCCc-cccc-cccccchhccccccc-cCCCCchhHHHHHH
Q 004840 105 GTSRS-HGSH-VAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 105 ltGkT-itl~-V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
..|++ +.++ +++++||++||.+|+ ++|+|+++|||+|+
T Consensus 8 ~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~ 48 (78)
T cd01797 8 MDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYR 48 (78)
T ss_pred CCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeC
Confidence 57876 5784 899999999999999 99999999999986
No 68
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.02 E-value=0.014 Score=53.54 Aligned_cols=57 Identities=26% Similarity=0.297 Sum_probs=43.4
Q ss_pred EEEEeCC-CcEEEEEec--CCCCHHHHHHHHHHHhC--CCCCCeEEEeCCeecCCccccccc
Q 004840 21 IKIKTLD-SQTYTLRVD--KQVPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAY 77 (728)
Q Consensus 21 ItVKtLd-GKt~tLeVd--psdTV~dLKekIeektG--IPpeqQRLIF~GKvLkDd~TLsdY 77 (728)
|+|++.+ -..+.++|. ...||..||++|.++.. ..-.++||||+||.|.|...|...
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 4555544 344667777 78999999999999873 344778999999999998777654
No 69
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=95.96 E-value=0.022 Score=48.85 Aligned_cols=62 Identities=11% Similarity=0.157 Sum_probs=47.0
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEE
Q 004840 26 LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (728)
Q Consensus 26 LdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhL 87 (728)
.+++.+++.|.++.++.++-++.++++++.+++-.|.|++|.|+-...+...|+.+|++|.|
T Consensus 4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 47889999999999999999999999999999999999999999999999999999999875
No 70
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=95.96 E-value=0.00055 Score=57.48 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=36.7
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHhh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAvL 144 (728)
..|+++.++|+++++|++||.+|+ +.|+|+++|+|+|+.-
T Consensus 6 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~ 46 (70)
T cd01798 6 NTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGK 46 (70)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCe
Confidence 578899999999999999999999 9999999999987743
No 71
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.015 Score=59.95 Aligned_cols=75 Identities=25% Similarity=0.338 Sum_probs=62.0
Q ss_pred CcEEEEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCC--cEEEEEEec
Q 004840 17 TTIEIKIKTL-DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDG--HTLHMVVRQ 91 (728)
Q Consensus 17 ssMqItVKtL-dGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdG--sTLhLVlR~ 91 (728)
....++++.. .++.+.+.+...+|+.++|.++..+.++.+-.|+++|.|++|.|...|..|+|+.| ..|.+.+..
T Consensus 144 ~e~~lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqviVlq 221 (231)
T KOG0013|consen 144 TEPILKLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVIVLQ 221 (231)
T ss_pred CCcchHHHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEEecc
Confidence 3344444443 46788889999999999999999999999999999999999999999999999999 455544443
No 72
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=95.81 E-value=0.058 Score=46.79 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=58.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCC---ccccccccccCCcEEEE
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHM 87 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--F~GKvLkD---d~TLsdYGIkdGsTLhL 87 (728)
...+|.||..+|+.+...+..++||.+|.+.|....+......+|+ |-.|.|.+ +++|.+.++....+|.|
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 3578999999999999999999999999999976666655667775 66777853 47999999988888765
No 73
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=95.76 E-value=0.00068 Score=58.57 Aligned_cols=38 Identities=11% Similarity=0.007 Sum_probs=35.2
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
..|+.+.++|++++||++||.+|+ +.|+++++|||+|.
T Consensus 9 ~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~ 47 (73)
T cd01791 9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW 47 (73)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeC
Confidence 468889999999999999999999 77999999999887
No 74
>COG5417 Uncharacterized small protein [Function unknown]
Probab=95.61 E-value=0.053 Score=48.08 Aligned_cols=69 Identities=22% Similarity=0.447 Sum_probs=57.2
Q ss_pred EEEE--EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-----CCeEEEeCCeecCCccccccccccCCcEEEE
Q 004840 19 IEIK--IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-----EQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (728)
Q Consensus 19 MqIt--VKtLdGKt~tLeVdpsdTV~dLKekIeektGIPp-----eqQRLIF~GKvLkDd~TLsdYGIkdGsTLhL 87 (728)
|+|+ ++.-+|.+|.+++....+|+.|-..+.+...+.. ...|..-+++.|.+++.|.+|+|.+|+.|.+
T Consensus 5 ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 5 IKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 4444 4556799999999999999999998887766432 3458889999999999999999999998875
No 75
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.037 Score=50.68 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=65.5
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
..|.|+|...++..+.+.|....+...|.+..+.+.|-..+..|++|+|+.++-++|-.+++.++++.|..+.
T Consensus 23 ~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~ 95 (103)
T COG5227 23 KHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVT 95 (103)
T ss_pred cccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHH
Confidence 3567777777889999999999999999999999999999999999999999999999999999998876553
No 76
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=95.57 E-value=0.00096 Score=57.27 Aligned_cols=39 Identities=8% Similarity=0.036 Sum_probs=36.4
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
++|+++.++|++++||++||.+|+ ..|||++.|+|+|..
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G 44 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEG 44 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECC
Confidence 578899999999999999999999 999999999999875
No 77
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.48 E-value=0.095 Score=45.08 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=53.8
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCC---ccccccccccCCcEEEE
Q 004840 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHM 87 (728)
Q Consensus 18 sMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--F~GKvLkD---d~TLsdYGIkdGsTLhL 87 (728)
..+|.||..+|+.+.-.+..++||.+|.+-|.....- ....+|+ |-.|.|.| +.+|.+.|+. .+.+.+
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~ 74 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQ 74 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEE
Confidence 3579999999999999999999999999999876443 4556675 56677754 6899999998 444444
No 78
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=95.40 E-value=0.0017 Score=56.38 Aligned_cols=38 Identities=11% Similarity=0.091 Sum_probs=34.9
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
..++++++.|++++||++||.+|+ ++|||++.||| |..
T Consensus 10 ~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G 48 (75)
T cd01799 10 SHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIG 48 (75)
T ss_pred cCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcC
Confidence 578889999999999999999999 99999999999 653
No 79
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=95.36 E-value=0.0012 Score=55.21 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=35.3
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
..|+++.++|+++++|++||.+|+ +.|+|++.|||+|+
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~ 46 (76)
T cd01806 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEEC
Confidence 578888999999999999999999 88999999999876
No 80
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=95.34 E-value=0.0012 Score=55.36 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=35.2
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
..|+.+.++|+++++|++||.+|+ ..|+|++.|+|+|+
T Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~ 46 (76)
T cd01803 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_pred CCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 578889999999999999999999 99999999999874
No 81
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.041 Score=56.86 Aligned_cols=75 Identities=24% Similarity=0.431 Sum_probs=58.2
Q ss_pred EEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE-EeCC--e---ec-CCccccccccccCCcEEEEEEe
Q 004840 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRL-ICRG--K---VL-KDDQLLSAYHVEDGHTLHMVVR 90 (728)
Q Consensus 19 MqItVKtLdGK-t~tLeVdpsdTV~dLKekIeektGIPpeqQRL-IF~G--K---vL-kDd~TLsdYGIkdGsTLhLVlR 90 (728)
++|+|.....+ ....++.+++||.+||.|++.++|.+++.++| +|+| | .| +++..|.+|+..+|..||++-.
T Consensus 2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred eEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 55666553322 23356789999999999999999999999998 5665 2 34 4668999999999999999976
Q ss_pred cCC
Q 004840 91 QPV 93 (728)
Q Consensus 91 ~p~ 93 (728)
.+.
T Consensus 82 ~~~ 84 (234)
T KOG3206|consen 82 NAQ 84 (234)
T ss_pred Ccc
Confidence 543
No 82
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.11 E-value=0.13 Score=45.35 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=54.6
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCC-CCCeEEE--eCCeecCC-ccccccccccCCcEE
Q 004840 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVL-SEQQRLI--CRGKVLKD-DQLLSAYHVEDGHTL 85 (728)
Q Consensus 18 sMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIP-peqQRLI--F~GKvLkD-d~TLsdYGIkdGsTL 85 (728)
..+|.||..+|+.+...+..++||.+|++.|....+-. .....|+ |-.|.|.| +.||.+.|+.+...+
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 46899999999999999999999999999999875432 3556665 77888854 689999999864443
No 83
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=95.09 E-value=0.0016 Score=56.50 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=35.3
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
..|+.+.++|++++||++||.+|+ +.|+++++|||+|+
T Consensus 9 ~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~ 47 (78)
T cd01804 9 TTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHR 47 (78)
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEEC
Confidence 568888999999999999999999 88999999999977
No 84
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=95.07 E-value=0.0017 Score=54.97 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=35.3
Q ss_pred CCCCccccccccccchhccccccc-cCCC--CchhHHHHHH
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGV--PSEISQIVSA 142 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGI--PpDQQRLIFA 142 (728)
..|+++.++|++++||.+||..|+ .+|+ +++.|+|+|+
T Consensus 8 ~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~ 48 (77)
T cd01805 8 LKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYS 48 (77)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEEC
Confidence 578889999999999999999999 9999 9999999876
No 85
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.90 E-value=0.17 Score=44.20 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=56.6
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCC---ccccccccccCCcEEEE
Q 004840 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHM 87 (728)
Q Consensus 18 sMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--F~GKvLkD---d~TLsdYGIkdGsTLhL 87 (728)
..+|.||..+|+.+.-.+..++||.+|++.|....+.. ....|+ |--|.+.+ +++|.++|+.+..+|+|
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 46899999999999999999999999999998765432 456665 66788853 48999999998888876
No 86
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=94.78 E-value=0.0019 Score=53.56 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=35.4
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
..|+++.+.++++++|.+||.+|+ ..|+|++.|+|+|+
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (72)
T cd01809 8 LDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYS 46 (72)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 578889999999999999999999 99999999999885
No 87
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=94.76 E-value=0.0027 Score=55.03 Aligned_cols=38 Identities=11% Similarity=0.087 Sum_probs=34.6
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHH--HHH
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQI--VSA 142 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRL--IFA 142 (728)
..|+++.++|++++||.+||.+|+ +.|+++++||| +|.
T Consensus 10 ~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~ 50 (80)
T cd01792 10 LGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDS 50 (80)
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccC
Confidence 578999999999999999999999 88999999999 653
No 88
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=94.67 E-value=0.0032 Score=54.38 Aligned_cols=37 Identities=8% Similarity=-0.010 Sum_probs=34.5
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHH
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIF 141 (728)
..|+++.++|++++||++||.+|+ ..|+|+++|+|+|
T Consensus 7 ~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~ 44 (74)
T cd01813 7 WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLG 44 (74)
T ss_pred ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEe
Confidence 467888999999999999999999 9999999999997
No 89
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.40 E-value=0.27 Score=43.90 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=58.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC--eecC--------CccccccccccCCcEEE
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG--KVLK--------DDQLLSAYHVEDGHTLH 86 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~G--KvLk--------Dd~TLsdYGIkdGsTLh 86 (728)
..++|.||..+|+.+.-.+..++||.+|..-|.. .+..++...|+++= |.+. .+.||.+.||.+..+|.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 4589999999999999999999999999999964 45566888888654 7775 35799999999877776
Q ss_pred E
Q 004840 87 M 87 (728)
Q Consensus 87 L 87 (728)
|
T Consensus 82 V 82 (85)
T cd01774 82 V 82 (85)
T ss_pred E
Confidence 5
No 90
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=94.23 E-value=0.07 Score=56.54 Aligned_cols=70 Identities=21% Similarity=0.246 Sum_probs=51.7
Q ss_pred EEEEEEeCCC-cEEE-EEecCCCCHHHHHHHHHHH-hCCCCCCeEE----EeCCeecCCccccccccccCCcEEEEE
Q 004840 19 IEIKIKTLDS-QTYT-LRVDKQVPVPALKEQIASV-TGVLSEQQRL----ICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 19 MqItVKtLdG-Kt~t-LeVdpsdTV~dLKekIeek-tGIPpeqQRL----IF~GKvLkDd~TLsdYGIkdGsTLhLV 88 (728)
|+|+++...+ -..+ .+.+...||.|++++|..+ ..+.+..+|+ .-+||.|.|+.+|++|+..++.+|.+-
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 5677776554 2333 5678889999999777654 5566644444 357999999999999999999777653
No 91
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=94.06 E-value=0.21 Score=50.00 Aligned_cols=74 Identities=23% Similarity=0.296 Sum_probs=55.9
Q ss_pred EEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEEe-CCeec--CCccccccccccCC----cEEE
Q 004840 19 IEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLIC-RGKVL--KDDQLLSAYHVEDG----HTLH 86 (728)
Q Consensus 19 MqItVKtLdG----Kt~tLeVdpsdTV~dLKekIeektGIPpeqQ-RLIF-~GKvL--kDd~TLsdYGIkdG----sTLh 86 (728)
|+|+|++++| .++.+.+..+.||.+|+.+|...++++...| .|.+ .++.| .++..+..+.-.+. .+|+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 6899999999 5888999999999999999999999998874 4554 34555 55666776655433 3566
Q ss_pred EEEecC
Q 004840 87 MVVRQP 92 (728)
Q Consensus 87 LVlR~p 92 (728)
|+++..
T Consensus 81 l~~rl~ 86 (162)
T PF13019_consen 81 LSLRLR 86 (162)
T ss_pred EEEecc
Confidence 666654
No 92
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=93.92 E-value=0.0049 Score=51.19 Aligned_cols=37 Identities=11% Similarity=0.111 Sum_probs=33.9
Q ss_pred CCCccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 106 tGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
.|+.+.++++++.||++||.+|+ ..|+|++.|+|+|.
T Consensus 8 ~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 45 (71)
T cd01812 8 GGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFK 45 (71)
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeC
Confidence 47778899999999999999999 99999999999876
No 93
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.30 E-value=0.67 Score=41.62 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=61.7
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeec---CCccccccccccCCcEEEEEEe
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVL---KDDQLLSAYHVEDGHTLHMVVR 90 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--F~GKvL---kDd~TLsdYGIkdGsTLhLVlR 90 (728)
..-+|.||..+|+.+.-.+..++++.+|-..|.. .+.+++..+|+ |--|.+ +.+.+|.+.|+....+|.|-.|
T Consensus 4 ~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 4 PKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEecC
Confidence 4568999999999999999999999999999988 57788888887 556776 3357999999999999887544
No 94
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.20 E-value=0.63 Score=41.18 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=59.8
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC---CccccccccccCCcEEEEE
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK---DDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--F~GKvLk---Dd~TLsdYGIkdGsTLhLV 88 (728)
...+|.||..+|+.+.-.+..++++.+|..-|..+ +.++...+|+ |--|.+. .+.+|.+.|+....+|.|-
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 45799999999999999999999999999999865 7777788886 6677773 3479999999988888764
No 95
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=92.70 E-value=0.0059 Score=50.53 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=35.9
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
..|+.+.++|+++++|.+||..|. ..|+|++.|+|+|..
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G 42 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNG 42 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETT
T ss_pred CCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeee
Confidence 467889999999999999999999 999999999998864
No 96
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=92.30 E-value=0.03 Score=49.71 Aligned_cols=39 Identities=0% Similarity=-0.158 Sum_probs=30.5
Q ss_pred CCCCc--cccccccccchhccccccc-cC--CCCchhHHHHHHh
Q 004840 105 GTSRS--HGSHVAPSVVIETFNLPDR-GD--GVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkT--itl~V~pSdTVesLK~kIQ-~E--GIPpDQQRLIFAv 143 (728)
++++. +.+++++++||.+||.+|. .. ..++++|||||.+
T Consensus 9 ~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~G 52 (79)
T cd01790 9 PNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSG 52 (79)
T ss_pred CCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcC
Confidence 46666 4556689999999999998 32 3568999999975
No 97
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=92.21 E-value=0.011 Score=52.15 Aligned_cols=41 Identities=5% Similarity=-0.080 Sum_probs=37.9
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHhhh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAvL~ 145 (728)
..|+.+.+.|++++++..||..++ +.|+++++|||+|+.-.
T Consensus 19 ~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~ 60 (87)
T cd01763 19 QDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQR 60 (87)
T ss_pred CCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeE
Confidence 578899999999999999999999 99999999999998754
No 98
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=92.15 E-value=0.011 Score=49.78 Aligned_cols=38 Identities=11% Similarity=0.038 Sum_probs=32.9
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
..|+ ..++|+++.||++||.+|+ +.|+++++|+|+|+.
T Consensus 8 ~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~G 46 (71)
T cd01808 8 PKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAG 46 (71)
T ss_pred CCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECC
Confidence 3565 4789999999999999999 889999999997754
No 99
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.72 E-value=0.021 Score=63.47 Aligned_cols=39 Identities=8% Similarity=0.144 Sum_probs=36.1
Q ss_pred CCCCccccccccccchhccccccc-cCC---CCchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDG---VPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EG---IPpDQQRLIFAv 143 (728)
..|+++.++|++++||.+||.+|+ ..| +++++|||||.+
T Consensus 8 l~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~G 50 (378)
T TIGR00601 8 LQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSG 50 (378)
T ss_pred CCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECC
Confidence 678899999999999999999999 667 999999999986
No 100
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=91.03 E-value=0.015 Score=46.50 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=31.8
Q ss_pred Cccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 108 kTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
+.+.++|+++.||++||.+|+ ..|+|++.|+|+|+
T Consensus 10 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~ 45 (64)
T smart00213 10 GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYK 45 (64)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 567789999999999999999 99999999999875
No 101
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=90.61 E-value=1.5 Score=37.35 Aligned_cols=68 Identities=28% Similarity=0.276 Sum_probs=52.2
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEe----CC--eecCCcccccccccc--CCcEEEEEEe
Q 004840 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLIC----RG--KVLKDDQLLSAYHVE--DGHTLHMVVR 90 (728)
Q Consensus 23 VKtLdGKt~tLeVdpsdTV~dLKekIeektGIPp-eqQRLIF----~G--KvLkDd~TLsdYGIk--dGsTLhLVlR 90 (728)
|+.+||...++.|+++.|+.+|-++|+++.++.. +-.-|.| +| .-|+.+++|.++... .-.++++.+|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frvk 77 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRVK 77 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEES
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEEE
Confidence 6788999999999999999999999999999864 4457777 22 347888899999877 3445555443
No 102
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=89.38 E-value=0.54 Score=41.30 Aligned_cols=56 Identities=23% Similarity=0.251 Sum_probs=46.9
Q ss_pred ecCCCCHHHHHHHHHHHhC-CCCCCeEEEeCCeecCCccccccc-cccCCcEEEEEEe
Q 004840 35 VDKQVPVPALKEQIASVTG-VLSEQQRLICRGKVLKDDQLLSAY-HVEDGHTLHMVVR 90 (728)
Q Consensus 35 VdpsdTV~dLKekIeektG-IPpeqQRLIF~GKvLkDd~TLsdY-GIkdGsTLhLVlR 90 (728)
|.+.++|.+||+.|..... ..-....|.++|+.|+|...|+++ +++++++|.|+.+
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 5688999999999987755 344667899999999999999988 5899999999854
No 103
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=87.92 E-value=0.057 Score=47.65 Aligned_cols=28 Identities=14% Similarity=0.219 Sum_probs=24.2
Q ss_pred ccchhccccccc-c--CCCC-chhHHHHHHhh
Q 004840 117 SVVIETFNLPDR-G--DGVP-SEISQIVSAVL 144 (728)
Q Consensus 117 SdTVesLK~kIQ-~--EGIP-pDQQRLIFAvL 144 (728)
++||++||.+|+ + +|++ +++|||||+.=
T Consensus 20 ~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GK 51 (75)
T cd01815 20 GYQVSTLKQLIAAQLPDSLPDPELIDLIHCGR 51 (75)
T ss_pred cCcHHHHHHHHHHhhccCCCChHHeEEEeCCc
Confidence 689999999999 5 6785 99999998764
No 104
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=87.11 E-value=2.2 Score=36.98 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=45.6
Q ss_pred cEEEEEEeCC------C-cEEEEEecCCCCHHHHHHHHHHHhC-CCC--CCeEEEeCCeecCCccccccccccCCcEEEE
Q 004840 18 TIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-VLS--EQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (728)
Q Consensus 18 sMqItVKtLd------G-Kt~tLeVdpsdTV~dLKekIeektG-IPp--eqQRLIF~GKvLkDd~TLsdYGIkdGsTLhL 87 (728)
+|+|+|++.. | +...+++....||.+|++.|..+.. +.. ..-.+..+++... .++-|++|++|.+
T Consensus 1 ~m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai 75 (82)
T PLN02799 1 SVEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAI 75 (82)
T ss_pred CeEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEE
Confidence 4789998874 3 4566788888999999999976641 111 1123556777654 4456788999988
Q ss_pred E
Q 004840 88 V 88 (728)
Q Consensus 88 V 88 (728)
+
T Consensus 76 ~ 76 (82)
T PLN02799 76 I 76 (82)
T ss_pred e
Confidence 6
No 105
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=87.08 E-value=0.098 Score=48.80 Aligned_cols=36 Identities=6% Similarity=-0.049 Sum_probs=32.6
Q ss_pred Cccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 108 kTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
+..++.|.+++||++||.+|+ ..+++|+.|+|+|++
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG 51 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDG 51 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecC
Confidence 346788999999999999999 999999999999883
No 106
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=86.47 E-value=3.3 Score=37.03 Aligned_cols=70 Identities=20% Similarity=0.237 Sum_probs=49.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEeCCee-----cCCcccccc----ccccCCcEEEEE
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLICRGKV-----LKDDQLLSA----YHVEDGHTLHMV 88 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPp-eqQRLIF~GKv-----LkDd~TLsd----YGIkdGsTLhLV 88 (728)
|+|++.. ++..+.+.+.++.+..+|+++|.+++++.. ....|-|.... |..+.-|.+ |......+|.|.
T Consensus 1 ~~vK~~~-~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v~l~ 79 (82)
T cd06407 1 VRVKATY-GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTIRLL 79 (82)
T ss_pred CEEEEEe-CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeEEEE
Confidence 4667766 678899999999999999999999999865 56677775422 333344444 444455677666
Q ss_pred E
Q 004840 89 V 89 (728)
Q Consensus 89 l 89 (728)
+
T Consensus 80 v 80 (82)
T cd06407 80 V 80 (82)
T ss_pred e
Confidence 5
No 107
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=86.25 E-value=3.1 Score=35.26 Aligned_cols=55 Identities=15% Similarity=0.235 Sum_probs=41.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCC----CCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 30 TYTLRVDKQVPVPALKEQIASVTGV----LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 30 t~tLeVdpsdTV~dLKekIeektGI----PpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
...++++...||.+|++++..+++- ......+..+|+..+ .++-|++|+.|.++-
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~p 75 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIP 75 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeC
Confidence 4567777789999999999887542 234556677888876 456799999999873
No 108
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=86.03 E-value=3.6 Score=37.38 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=39.0
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---CCeEEEe
Q 004840 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS---EQQRLIC 63 (728)
Q Consensus 20 qItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPp---eqQRLIF 63 (728)
.+++|...|+++.+.+.+++.+.+|++.|.++.|+.. ....|.|
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 4678889999999999999999999999999999886 4667777
No 109
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=85.52 E-value=3 Score=35.71 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=40.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~G 65 (728)
++|+++. ++..+.+.+....|..+|+.+|..++++.....+|-|..
T Consensus 2 ~~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 2 VDVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred ccEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 5677777 678899999999999999999999999887778888865
No 110
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=85.46 E-value=5.5 Score=34.11 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=45.1
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 18 sMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
+|+|++... .+...++++...||.+|.+++ +++.+...+..+|+.+. .++-+++|+.|.++-
T Consensus 4 mm~v~vng~-~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~ 65 (70)
T PRK08364 4 MIRVKVIGR-GIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIP 65 (70)
T ss_pred EEEEEEecc-ccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEc
Confidence 455665432 235678888889999998766 66667777788998884 366788999998863
No 111
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=85.35 E-value=7 Score=38.06 Aligned_cols=74 Identities=23% Similarity=0.241 Sum_probs=53.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEeC--C----eecCCcccccccccc-CCcEEEEE
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLICR--G----KVLKDDQLLSAYHVE-DGHTLHMV 88 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPp-eqQRLIF~--G----KvLkDd~TLsdYGIk-dGsTLhLV 88 (728)
..+.|.|..++|....+.+++.+|+.+|.+.|+.+.|+.. ..--|.+. . ..|+...+|.+...+ ....+++-
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 3578999999999999999999999999999999999953 22244331 1 346666677766654 23455555
Q ss_pred Ee
Q 004840 89 VR 90 (728)
Q Consensus 89 lR 90 (728)
.|
T Consensus 82 ~r 83 (207)
T smart00295 82 VK 83 (207)
T ss_pred EE
Confidence 44
No 112
>PRK06437 hypothetical protein; Provisional
Probab=84.69 E-value=4.9 Score=34.36 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=44.5
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
.++...++++...||.+|-++ .+++++...+..+|+.+. .++-+++|+.|.++-
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 567788888888999988765 478888888899999997 677888999998874
No 113
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=84.49 E-value=1.5 Score=48.90 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=57.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCc--cccccccccCCcEEEEEEec
Q 004840 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD--QLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd--~TLsdYGIkdGsTLhLVlR~ 91 (728)
..+++.+.|..+.....|+..+...+++..+..-|+|+++.|.+. ..|..||++++++|.+=.+.
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks 77 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKS 77 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCC
Confidence 567888999999999999999999999999999999999999755 68999999999998775443
No 114
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=82.28 E-value=3.7 Score=36.99 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=39.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK 66 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GK 66 (728)
..|+|.+. . ++.|+|.+..+..+|+++|.++.++++++.+|.|+..
T Consensus 3 ~vvKV~f~-~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 3 YVVKVHFK-Y-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred eEEEEEEE-E-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 34555553 2 8889999999999999999999999999999999764
No 115
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=82.18 E-value=0.42 Score=52.07 Aligned_cols=68 Identities=19% Similarity=0.328 Sum_probs=0.0
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEec---C--CCCHHHHHHHHHH----------HhCCCCCCeE-----EEeCCeecCCcc
Q 004840 13 ESSETTIEIKIKTLDSQTYTLRVD---K--QVPVPALKEQIAS----------VTGVLSEQQR-----LICRGKVLKDDQ 72 (728)
Q Consensus 13 e~s~ssMqItVKtLdGKt~tLeVd---p--sdTV~dLKekIee----------ktGIPpeqQR-----LIF~GKvLkDd~ 72 (728)
......|.|++|.+-.-.+.|.+. + +.+|.+||..+++ ++++|.+..+ |+|+-|.+.|.+
T Consensus 73 Pgs~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~k 152 (309)
T PF12754_consen 73 PGSSKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSK 152 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcC
Confidence 344567889999887666655442 2 5789999999999 8999999998 999999999999
Q ss_pred cccccccc
Q 004840 73 LLSAYHVE 80 (728)
Q Consensus 73 TLsdYGIk 80 (728)
+|.+..-.
T Consensus 153 tl~e~l~~ 160 (309)
T PF12754_consen 153 TLAEVLAD 160 (309)
T ss_dssp --------
T ss_pred cHHHHHhc
Confidence 99887643
No 116
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=80.11 E-value=1.4 Score=45.27 Aligned_cols=114 Identities=22% Similarity=0.194 Sum_probs=56.6
Q ss_pred EEEEEeCCC-----cEEEEEecCCCCHHHHHHHHHHHhCCCCC---CeEE--EeCCee---cCCccccccccccCCcEEE
Q 004840 20 EIKIKTLDS-----QTYTLRVDKQVPVPALKEQIASVTGVLSE---QQRL--ICRGKV---LKDDQLLSAYHVEDGHTLH 86 (728)
Q Consensus 20 qItVKtLdG-----Kt~tLeVdpsdTV~dLKekIeektGIPpe---qQRL--IF~GKv---LkDd~TLsdYGIkdGsTLh 86 (728)
.|+|.+++. +.+.+-|..+.||.+|.+++..+.+++.+ ..|| ++++|. +..+..|..+ .+..+++
T Consensus 20 ~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r 97 (213)
T PF14533_consen 20 QFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLR 97 (213)
T ss_dssp -EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEE
T ss_pred EEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceee
Confidence 455555531 35778899999999999999999998764 4454 467765 5666677665 2323333
Q ss_pred EEEecCCCCCC-----CCCCCCC---------CCCCccccccccccchhccccccc-cCCCCch
Q 004840 87 MVVRQPVPSSS-----DGTHNLP---------GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSE 135 (728)
Q Consensus 87 LVlR~p~s~ss-----s~~qIfV---------ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpD 135 (728)
+-.-....... ...-|.| .-|--+.+.|.++.++.++|.+|+ +.|++..
T Consensus 98 ~E~ip~ee~~~~~~~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 98 IEEIPEEELNLDDESEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp EEE--GGGSS--TT--TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred eecCChHHhhcccccccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 32111111000 0011111 123334579999999999999999 8898653
No 117
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=79.99 E-value=7.8 Score=35.38 Aligned_cols=47 Identities=11% Similarity=0.267 Sum_probs=38.5
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe
Q 004840 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK 66 (728)
Q Consensus 18 sMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GK 66 (728)
.|+|+|.. .+..+.+.|.++.+..+|.++|.+++++. ...+|-|...
T Consensus 2 ~ikVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 2 KIRVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred cEEEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 46777776 57899999999999999999999999985 4556666554
No 118
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=79.34 E-value=8.8 Score=35.18 Aligned_cols=63 Identities=14% Similarity=0.234 Sum_probs=44.7
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe--C--C-eec-CCccccccccccCCcEEEEEEecC
Q 004840 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--R--G-KVL-KDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF--~--G-KvL-kDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
..++..+...+||..+++.+.+.+.| .++-||-- . + ..| +.+.||.+.+|.+|.+|.+-.|..
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~ 82 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNE 82 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--T
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeecc
Confidence 46778899999999999999999999 77788842 2 2 345 455799999999999998887765
No 119
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=77.61 E-value=9.9 Score=33.37 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=40.0
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004840 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (728)
Q Consensus 21 ItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~G 65 (728)
+.|-..+|+...+.|.+.+||.++-+++.++.++.++.-.|.+.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 467788999999999999999999999999999999888776654
No 120
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=77.17 E-value=8.3 Score=32.97 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=39.4
Q ss_pred cEEEEEEeCCCcEEE-EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004840 18 TIEIKIKTLDSQTYT-LRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (728)
Q Consensus 18 sMqItVKtLdGKt~t-LeVdpsdTV~dLKekIeektGIPpeqQRLIF~G 65 (728)
++.|+++.- +..+. +.+....+..+|+.+|.++++......+|.|..
T Consensus 1 t~~vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYG-GDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp SEEEEEEET-TEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CEEEEEEEC-CeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 467888885 45455 899999999999999999999998888998854
No 121
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=75.90 E-value=0.33 Score=46.06 Aligned_cols=33 Identities=9% Similarity=0.053 Sum_probs=27.9
Q ss_pred ccccccccchhccccccc------cCCCC--chhHHHHHHh
Q 004840 111 GSHVAPSVVIETFNLPDR------GDGVP--SEISQIVSAV 143 (728)
Q Consensus 111 tl~V~pSdTVesLK~kIQ------~EGIP--pDQQRLIFAv 143 (728)
.+.+.+++||++||.+|+ ++|+| +++|+|||++
T Consensus 19 p~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysG 59 (113)
T cd01814 19 PKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAG 59 (113)
T ss_pred ccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCC
Confidence 467889999999999998 34566 9999999986
No 122
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=74.99 E-value=7.4 Score=35.67 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=45.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEec
Q 004840 30 TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 30 t~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~ 91 (728)
.+...++-..++..||+.++.+.++..+.-.+...+..|+++++|-+-+|+-..++.+-+..
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi 65 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQI 65 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEE
Confidence 34567778899999999999999999999999889988999999999999988888887654
No 123
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=74.63 E-value=10 Score=32.20 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=36.7
Q ss_pred EEEEEeCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004840 20 EIKIKTLDSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICRG 65 (728)
Q Consensus 20 qItVKtLdGKt~tLeVd-psdTV~dLKekIeektGIPpeqQRLIF~G 65 (728)
.|+++. ++..+.+.+. ...+..+|+.+|.+++++.....+|.|..
T Consensus 2 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cEEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 566776 3677888888 99999999999999999876666777755
No 124
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=74.37 E-value=6.7 Score=33.31 Aligned_cols=48 Identities=13% Similarity=0.316 Sum_probs=36.0
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEe
Q 004840 32 TLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (728)
Q Consensus 32 tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR 90 (728)
.+++..+.|+.+||.++..... .+||+|=..+++ +-+++|+.|.|+.|
T Consensus 9 ~~~~~~~~tl~~lr~~~k~~~D------I~I~NGF~~~~d-----~~L~e~D~v~~Ikk 56 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKPDAD------IVILNGFPTKED-----IELKEGDEVFLIKK 56 (57)
T ss_pred EEEcCCCcCHHHHHHhhCCCCC------EEEEcCcccCCc-----cccCCCCEEEEEeC
Confidence 4567778999999998775433 679999777665 55678888888754
No 125
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=74.22 E-value=0.28 Score=39.64 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=32.1
Q ss_pred CCCccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 106 tGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
.|+.+.+.+.++.+|++||..|. ..|+|++.|+|+|.
T Consensus 6 ~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~ 43 (69)
T cd01769 6 TGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYA 43 (69)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 46677788899999999999999 88999999998654
No 126
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=74.21 E-value=14 Score=42.30 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=56.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCC------CCCeEEE-eCCeecCCccccccccccCCcEEEEEEec
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVL------SEQQRLI-CRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIP------peqQRLI-F~GKvLkDd~TLsdYGIkdGsTLhLVlR~ 91 (728)
.+|+|... .+...+-+..+..|.||...|.+..+-. ...-.|. .+|..|+.+++|.+.+|.||++|+|.-+.
T Consensus 3 ~RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 3 CRVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 57888874 4567788889999999999998877641 1223443 47889999999999999999999998654
Q ss_pred C
Q 004840 92 P 92 (728)
Q Consensus 92 p 92 (728)
.
T Consensus 82 ~ 82 (452)
T TIGR02958 82 A 82 (452)
T ss_pred C
Confidence 3
No 127
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=74.00 E-value=15 Score=32.18 Aligned_cols=56 Identities=9% Similarity=0.162 Sum_probs=39.3
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCC-----C------CCCeEEEeCCeecCCccccccccccCCcEEEEE
Q 004840 29 QTYTLRVDKQVPVPALKEQIASVTGV-----L------SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIeektGI-----P------peqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLV 88 (728)
....+++. ..||.+|++.|.+++.- - .....+..+|+..+++.. +-|++|+.|.++
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~ 82 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIF 82 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEe
Confidence 34667776 89999999999887641 0 123456677877754432 678999999887
No 128
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.99 E-value=5.4 Score=44.29 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=46.0
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEe---CCeec-----CCccccccccccCCcEEEEE
Q 004840 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLIC---RGKVL-----KDDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 33 LeVdpsdTV~dLKekIeektGIPpeqQRLIF---~GKvL-----kDd~TLsdYGIkdGsTLhLV 88 (728)
.-|...-||.+||+++..+.|+.+.++||+| +||.- +.++.|-.|+|++|+.+.+-
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 4566678999999999999999999999987 45443 34578999999999988664
No 129
>smart00455 RBD Raf-like Ras-binding domain.
Probab=73.81 E-value=10 Score=32.88 Aligned_cols=45 Identities=20% Similarity=0.159 Sum_probs=40.4
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004840 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (728)
Q Consensus 21 ItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~G 65 (728)
+.|-..+|+...+.+.+..||.++-+++.++.|+.++.-.|++.|
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 456678899999999999999999999999999999988888754
No 130
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=72.51 E-value=13 Score=43.67 Aligned_cols=78 Identities=23% Similarity=0.393 Sum_probs=49.0
Q ss_pred CCCcEEEEEEeCC--CcEEEEEecCCCCHHHHHHHHHHH--hCCC------CCCeEEEe--C--Ce-ecCCc--------
Q 004840 15 SETTIEIKIKTLD--SQTYTLRVDKQVPVPALKEQIASV--TGVL------SEQQRLIC--R--GK-VLKDD-------- 71 (728)
Q Consensus 15 s~ssMqItVKtLd--GKt~tLeVdpsdTV~dLKekIeek--tGIP------peqQRLIF--~--GK-vLkDd-------- 71 (728)
...+|.|+|-..+ ...+.+.|-.+|||.++|+||-+. .+.| +++.-|.+ + |+ .|+|.
T Consensus 186 d~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~ 265 (539)
T PF08337_consen 186 DYKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEG 265 (539)
T ss_dssp -S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEET
T ss_pred ceEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCC
Confidence 4456778866543 345788999999999999999654 2222 24454432 2 23 45442
Q ss_pred -----cccccccccCCcEEEEEEecC
Q 004840 72 -----QLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 72 -----~TLsdYGIkdGsTLhLVlR~p 92 (728)
.||..|+|.+|++|-|+.+..
T Consensus 266 ~wkrLNTL~HY~V~dga~vaLv~k~~ 291 (539)
T PF08337_consen 266 GWKRLNTLAHYKVPDGATVALVPKQH 291 (539)
T ss_dssp TEEE--BHHHHT--TTEEEEEEES--
T ss_pred CceEeccHhhcCCCCCceEEEeeccc
Confidence 368999999999999998764
No 131
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=72.07 E-value=8.1 Score=40.67 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=53.5
Q ss_pred CCCCCcEEEEEEeCCC--cEEE----EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC------eecCCcccccccccc
Q 004840 13 ESSETTIEIKIKTLDS--QTYT----LRVDKQVPVPALKEQIASVTGVLSEQQRLICRG------KVLKDDQLLSAYHVE 80 (728)
Q Consensus 13 e~s~ssMqItVKtLdG--Kt~t----LeVdpsdTV~dLKekIeektGIPpeqQRLIF~G------KvLkDd~TLsdYGIk 80 (728)
......+-|++|..|- +++. +-|+.+++|.+|-..|.++.|+|++..-++|.- ..|+...++..+.|.
T Consensus 63 ~~~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~ 142 (249)
T PF12436_consen 63 YDPSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQ 142 (249)
T ss_dssp --TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--
T ss_pred CCCCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccC
Confidence 3445578999998873 3433 478999999999999999999999888777743 346888999999999
Q ss_pred CCcEEEEEEec
Q 004840 81 DGHTLHMVVRQ 91 (728)
Q Consensus 81 dGsTLhLVlR~ 91 (728)
+|+.|.+-...
T Consensus 143 ~GdIi~fQ~~~ 153 (249)
T PF12436_consen 143 DGDIICFQRAP 153 (249)
T ss_dssp TTEEEEEEE--
T ss_pred CCCEEEEEecc
Confidence 99999876644
No 132
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=71.19 E-value=29 Score=32.27 Aligned_cols=77 Identities=21% Similarity=0.243 Sum_probs=54.0
Q ss_pred CCcEEEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHh----C--CCCC-CeEEEeCCee--cCCcccccccc-----cc
Q 004840 16 ETTIEIKIKTLD-SQTYTLRVDKQVPVPALKEQIASVT----G--VLSE-QQRLICRGKV--LKDDQLLSAYH-----VE 80 (728)
Q Consensus 16 ~ssMqItVKtLd-GKt~tLeVdpsdTV~dLKekIeekt----G--IPpe-qQRLIF~GKv--LkDd~TLsdYG-----Ik 80 (728)
...+.|.|...+ ...+++.+++++++.+|.+.+-.+. + .+++ +..|--.|+. |..+..|.+|. ++
T Consensus 15 ~~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~ 94 (108)
T smart00144 15 ANKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLK 94 (108)
T ss_pred CCeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHh
Confidence 356777777654 4678999999999999998887661 1 2222 5566566643 66777787774 67
Q ss_pred CCcEEEEEEecC
Q 004840 81 DGHTLHMVVRQP 92 (728)
Q Consensus 81 dGsTLhLVlR~p 92 (728)
.|..++|++...
T Consensus 95 ~~~~~~L~L~~~ 106 (108)
T smart00144 95 NGREPHLVLMTL 106 (108)
T ss_pred cCCCceEEEEec
Confidence 788888887643
No 133
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=70.73 E-value=19 Score=32.93 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=48.5
Q ss_pred EEEEEeCCCcEEEEEecC-----CCCHHHHHHHHHHHhCCCC-CCeEEEeCCe-----ecCCccccccc-----cccCCc
Q 004840 20 EIKIKTLDSQTYTLRVDK-----QVPVPALKEQIASVTGVLS-EQQRLICRGK-----VLKDDQLLSAY-----HVEDGH 83 (728)
Q Consensus 20 qItVKtLdGKt~tLeVdp-----sdTV~dLKekIeektGIPp-eqQRLIF~GK-----vLkDd~TLsdY-----GIkdGs 83 (728)
.|+|++ ++....|.+.. +.+..+|+++|.+.+++++ ....|.|... .|.++.-|.++ .-....
T Consensus 2 ~vKv~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~ 80 (91)
T cd06398 2 VVKVKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLN 80 (91)
T ss_pred EEEEEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCc
Confidence 467777 56677777764 7999999999999999987 5667777542 23444444333 233567
Q ss_pred EEEEEEec
Q 004840 84 TLHMVVRQ 91 (728)
Q Consensus 84 TLhLVlR~ 91 (728)
+|.|.++.
T Consensus 81 ~lrl~v~~ 88 (91)
T cd06398 81 PLRIDVTV 88 (91)
T ss_pred eEEEEEEE
Confidence 77777654
No 134
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=69.75 E-value=1 Score=49.56 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=37.0
Q ss_pred CCCCCCccccccccccchhccccccc-cCC--CCchhHHHHHHhh
Q 004840 103 LPGTSRSHGSHVAPSVVIETFNLPDR-GDG--VPSEISQIVSAVL 144 (728)
Q Consensus 103 fVltGkTitl~V~pSdTVesLK~kIQ-~EG--IPpDQQRLIFAvL 144 (728)
+.+.+.+++++|.+.++|..+|.+|. ..| .|.++|+|||++=
T Consensus 6 KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~Gk 50 (340)
T KOG0011|consen 6 KTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGK 50 (340)
T ss_pred eeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecce
Confidence 34788889999999999999999999 555 9999999999863
No 135
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=69.60 E-value=0.52 Score=37.37 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=33.4
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHH
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIF 141 (728)
..|+++.+.+.++++|+.+|.+|. ..|++++.|++.|
T Consensus 7 ~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~ 44 (75)
T KOG0001|consen 7 LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIF 44 (75)
T ss_pred cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEE
Confidence 578889999999999999999999 8899999999654
No 136
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=68.34 E-value=17 Score=32.07 Aligned_cols=65 Identities=15% Similarity=0.317 Sum_probs=52.1
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhC---CCCCCeEEE-eCCeecCCccccccccccCCcEEEEEEec
Q 004840 27 DSQTYTLRVDKQVPVPALKEQIASVTG---VLSEQQRLI-CRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIeektG---IPpeqQRLI-F~GKvLkDd~TLsdYGIkdGsTLhLVlR~ 91 (728)
+|+...++.+.+..+--+.++--+..+ -|++...|- -.|.+|+-++.+.|||+.++.+|.|.++.
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 577788888888888777777655544 577777765 46889999999999999999999998864
No 137
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=68.04 E-value=26 Score=30.27 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=39.4
Q ss_pred EEEEEecCC-CCHHHHHHHHHHHhC-CC--CCCeEEEeCCeecCCccccccccccCCcEEEEE
Q 004840 30 TYTLRVDKQ-VPVPALKEQIASVTG-VL--SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 30 t~tLeVdps-dTV~dLKekIeektG-IP--peqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLV 88 (728)
...+++... .||.+|++.|.+++. +- .....+..+++...+ +.-|++|+.|.++
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~ 74 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFI 74 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEe
Confidence 346788877 899999999988864 11 123456677777664 5788999999887
No 138
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=67.64 E-value=1.6 Score=50.27 Aligned_cols=35 Identities=14% Similarity=0.051 Sum_probs=31.9
Q ss_pred ccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 109 Titl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
...+.|..+++|.+||++|. .-++++|+++|||++
T Consensus 26 k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaG 61 (493)
T KOG0010|consen 26 KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAG 61 (493)
T ss_pred ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecC
Confidence 35688999999999999999 889999999999985
No 139
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=66.30 E-value=41 Score=29.14 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=29.4
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCC--CCCeEEE
Q 004840 28 SQTYTLRVDKQVPVPALKEQIASVTGVL--SEQQRLI 62 (728)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIeektGIP--peqQRLI 62 (728)
+...+|.|..++|..+|-+.+.+|+++. +++..|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 6667899999999999999999999987 4555554
No 140
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=66.28 E-value=9 Score=37.10 Aligned_cols=57 Identities=25% Similarity=0.372 Sum_probs=42.6
Q ss_pred EecC-CCCHHHHHHHHHHH----hCCCC------CCeEEEeCC-----------------eec---CCccccccccccCC
Q 004840 34 RVDK-QVPVPALKEQIASV----TGVLS------EQQRLICRG-----------------KVL---KDDQLLSAYHVEDG 82 (728)
Q Consensus 34 eVdp-sdTV~dLKekIeek----tGIPp------eqQRLIF~G-----------------KvL---kDd~TLsdYGIkdG 82 (728)
.|+. +.||.+||+.+.+. .+++| +..||+++- ..| +++.+|.+|||++.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 4776 89999999888765 34444 556666432 456 67889999999999
Q ss_pred cEEEEEEe
Q 004840 83 HTLHMVVR 90 (728)
Q Consensus 83 sTLhLVlR 90 (728)
..|-++.+
T Consensus 101 TEiSfF~~ 108 (122)
T PF10209_consen 101 TEISFFNM 108 (122)
T ss_pred ceeeeeCH
Confidence 99988764
No 141
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=65.78 E-value=35 Score=29.28 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=38.6
Q ss_pred EEEEEeCCCc----EEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEE-e---CC--eecCCcc
Q 004840 20 EIKIKTLDSQ----TYTLRVDKQVPVPALKEQIASVTGV--LSEQQRLI-C---RG--KVLKDDQ 72 (728)
Q Consensus 20 qItVKtLdGK----t~tLeVdpsdTV~dLKekIeektGI--PpeqQRLI-F---~G--KvLkDd~ 72 (728)
.|+|-..++. ..+|.|...+|+.+|-+.+.+++++ .+.+..|+ + .| +.|.|+.
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E 68 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDE 68 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTS
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCC
Confidence 3555555555 7889999999999999999999998 44556773 2 23 5576554
No 142
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=65.75 E-value=31 Score=31.10 Aligned_cols=66 Identities=14% Similarity=0.171 Sum_probs=45.2
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 14 ~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
....+|+|+| +|+.+. ++...||.+|-+. .++++...-+-++|..+. ......+-+++||.|.++-
T Consensus 14 ~~~~~m~I~V---NG~~~~--~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 14 AAMVLITISI---NDQSIQ--VDISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred CCCceEEEEE---CCeEEE--cCCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEE
Confidence 3344555555 466554 4567788877765 367777777788998883 3345677799999998874
No 143
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=65.15 E-value=35 Score=31.14 Aligned_cols=76 Identities=25% Similarity=0.380 Sum_probs=51.0
Q ss_pred CCcEEEEEEeC-CCcEEEEEecCCCCHHHHHHHHHHH--hCCCC---C-CeEEEeCCe--ecCCcccccccc-----ccC
Q 004840 16 ETTIEIKIKTL-DSQTYTLRVDKQVPVPALKEQIASV--TGVLS---E-QQRLICRGK--VLKDDQLLSAYH-----VED 81 (728)
Q Consensus 16 ~ssMqItVKtL-dGKt~tLeVdpsdTV~dLKekIeek--tGIPp---e-qQRLIF~GK--vLkDd~TLsdYG-----Ikd 81 (728)
...+.|.|... +...++|.++.+.|+.+|.+++..+ .+... . +..|--.|+ -|..+..|.+|. ++.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~ 93 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKR 93 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHC
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhc
Confidence 45788999887 4667899999999999999888766 22222 2 566666664 367788888884 567
Q ss_pred CcEEEEEEec
Q 004840 82 GHTLHMVVRQ 91 (728)
Q Consensus 82 GsTLhLVlR~ 91 (728)
+-.++|++..
T Consensus 94 ~~~~~L~Lv~ 103 (106)
T PF00794_consen 94 GKDPHLVLVH 103 (106)
T ss_dssp T--EEEEEEE
T ss_pred CCCcEEEEEe
Confidence 7788887653
No 144
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=62.94 E-value=30 Score=28.88 Aligned_cols=55 Identities=7% Similarity=0.239 Sum_probs=39.1
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
+|+.+.+ + ..||.+|.+.+ ++.++...+.++++.+. .....++-+++||.|.++-
T Consensus 6 Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 6 NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILS 60 (65)
T ss_pred CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEE
Confidence 5677766 3 46899888765 56655566778888875 3334567789999998874
No 145
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=62.91 E-value=26 Score=29.35 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=46.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 30 TYTLRVDKQVPVPALKEQIASVTGV--LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 30 t~tLeVdpsdTV~dLKekIeektGI--PpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
...+.+....||.+|.+++..++.- ......+..+|+.+.+ .-.++-+++|+.|.++-
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILP 72 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEE
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEEC
Confidence 5677888999999999999877531 2366788889998888 36778889999999874
No 146
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=61.42 E-value=13 Score=41.88 Aligned_cols=68 Identities=21% Similarity=0.197 Sum_probs=53.0
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCC-CCCeEEE--eCCeecC-CccccccccccCCcEE
Q 004840 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVL-SEQQRLI--CRGKVLK-DDQLLSAYHVEDGHTL 85 (728)
Q Consensus 18 sMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIP-peqQRLI--F~GKvLk-Dd~TLsdYGIkdGsTL 85 (728)
+-.|.||..+|+.+...++...||.+|+..|.....-. ...+.|+ |--|.|. |+.||++.++.+-..|
T Consensus 305 tTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 305 TTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred cceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 44788888899999999999999999999998765433 3455554 5678885 4589999999876544
No 147
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=60.01 E-value=25 Score=32.57 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=35.1
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe
Q 004840 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC 63 (728)
Q Consensus 23 VKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF 63 (728)
+++..|++..+.|+.+.+..+|+.++.+.+++... ..|-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 67889999999999999999999999999998865 55544
No 148
>PLN02560 enoyl-CoA reductase
Probab=59.49 E-value=1.3 Score=48.17 Aligned_cols=36 Identities=11% Similarity=0.094 Sum_probs=30.9
Q ss_pred CCCcc---ccccccccchhccccccc-cCCC-CchhHHHHH
Q 004840 106 TSRSH---GSHVAPSVVIETFNLPDR-GDGV-PSEISQIVS 141 (728)
Q Consensus 106 tGkTi---tl~V~pSdTVesLK~kIQ-~EGI-PpDQQRLIF 141 (728)
+||.+ +++++++.||++||..|+ +.++ ++++|||++
T Consensus 9 ~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~ 49 (308)
T PLN02560 9 SGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTL 49 (308)
T ss_pred CCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEE
Confidence 46665 689999999999999999 7776 899999975
No 149
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=56.62 E-value=43 Score=29.04 Aligned_cols=52 Identities=17% Similarity=0.159 Sum_probs=38.8
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC--eecCCcc
Q 004840 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG--KVLKDDQ 72 (728)
Q Consensus 21 ItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~G--KvLkDd~ 72 (728)
+.|-..+++...+.|.+.+||.++-.++.++.++.++.-.+...| |.|..++
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~ 56 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQ 56 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTS
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCC
Confidence 567788999999999999999999999999999998877665433 4454443
No 150
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=55.74 E-value=59 Score=37.65 Aligned_cols=121 Identities=12% Similarity=0.165 Sum_probs=82.1
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE--EeCCeecCC---ccccccccccCCcEEEEEEec
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRL--ICRGKVLKD---DQLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRL--IF~GKvLkD---d~TLsdYGIkdGsTLhLVlR~ 91 (728)
...+|.|+..+|..|+-.+..++-+..+|+.|..+.++.....-| .|--|+..| +++|.++.+.+...|.|+-+.
T Consensus 313 d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred ceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 357899999999999999988899999999999988888777766 477777743 378999999988888777665
Q ss_pred CCCCCCCCCCCCCCCCCccccccccccchhccccccccCCCCchhHHHHHHhhhccCCCCCCC
Q 004840 92 PVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFNLPDRGDGVPSEISQIVSAVLGSFGLSNIGS 154 (728)
Q Consensus 92 p~s~sss~~qIfVltGkTitl~V~pSdTVesLK~kIQ~EGIPpDQQRLIFAvL~sfG~~~~~~ 154 (728)
..... +....+..+.-.+++ -.+..--.-|++..+++.|+.++++.
T Consensus 393 r~t~s-----~~gss~s~sw~ll~p------------v~~gl~altr~~s~f~~~f~wpgqg~ 438 (506)
T KOG2507|consen 393 RATVS-----QRGSSYSESWNLLDP------------VSGGLFALTRRVSSFANPFSWPGQGT 438 (506)
T ss_pred CcceE-----EecCccchhhcccCc------------cchhHHHHHHHHHHHhccCCCCCCCc
Confidence 43211 110110111111111 11222356778888888888776654
No 151
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=53.95 E-value=38 Score=30.72 Aligned_cols=36 Identities=8% Similarity=0.248 Sum_probs=31.0
Q ss_pred EEEEEEeCCCcEEEEEecC--CCCHHHHHHHHHHHhCCC
Q 004840 19 IEIKIKTLDSQTYTLRVDK--QVPVPALKEQIASVTGVL 55 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdp--sdTV~dLKekIeektGIP 55 (728)
++|++.+ +|.+..+.+++ +.+..+|++.|...+++.
T Consensus 1 V~vKaty-~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 1 VNLKVTY-NGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred CEEEEEE-CCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 3567776 68888899998 779999999999999998
No 152
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=52.32 E-value=46 Score=28.05 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=39.5
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
+|+.+.+ ....||.+|-+. .+++++..-+.++++.+..+.- ..+ +++||.|.++-
T Consensus 6 NG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~ieIv~ 60 (65)
T PRK05863 6 NEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDW-ATK-LRDGARLEVVT 60 (65)
T ss_pred CCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHh-hhh-cCCCCEEEEEe
Confidence 5665554 467787777654 5788888899999998854332 235 89999998874
No 153
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=51.53 E-value=36 Score=41.34 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=38.5
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecC
Q 004840 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLK 69 (728)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLk 69 (728)
+...+.+.++++.|+..|++.|...+|+|.+.|.|+|.|....
T Consensus 323 ~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h 365 (732)
T KOG4250|consen 323 QATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSH 365 (732)
T ss_pred cceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCccc
Confidence 4677889999999999999999999999999999999976543
No 154
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=51.41 E-value=45 Score=30.57 Aligned_cols=59 Identities=14% Similarity=0.242 Sum_probs=44.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEE------eCCeecCCccccccc
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLI------CRGKVLKDDQLLSAY 77 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeq-QRLI------F~GKvLkDd~TLsdY 77 (728)
..|+|...||....|.|+..+|+.++-+++..|.++.... --|+ +=.+.++|...|-++
T Consensus 3 ~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdv 68 (85)
T cd01787 3 QVVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEV 68 (85)
T ss_pred eEEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHH
Confidence 4677888899999999999999999999999999875533 3333 124567777655443
No 155
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=49.39 E-value=83 Score=25.95 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=35.7
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
+|+.+ ++....||.+|.+.+. +. ....+.++|+.+.... -.+.-+++|+.|.++-
T Consensus 6 Ng~~~--~~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 6 NQQTL--SLPDGATVADALAAYG----AR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQ 60 (65)
T ss_pred CCEEE--ECCCCCcHHHHHHhhC----CC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEe
Confidence 45654 4556789999887653 33 3456678888764322 2344488999998874
No 156
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=48.97 E-value=48 Score=27.68 Aligned_cols=56 Identities=14% Similarity=0.332 Sum_probs=40.0
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
+|+.+ +++...||.+|.+++ +++.+...+.++|+.+..+ .-.++-|++|+.|.++-
T Consensus 5 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 5 NGEPR--EVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVT 60 (65)
T ss_pred CCeEE--EcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEE
Confidence 45554 455678999998775 4667778888999887543 23445689999998874
No 157
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=46.55 E-value=79 Score=26.21 Aligned_cols=56 Identities=14% Similarity=0.293 Sum_probs=39.6
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
+|+.+ ++....||.+|-+. .+++.+..-+.++|+.+.-.. -.++-+++|+.|.++-
T Consensus 6 NG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 6 NGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVH 61 (66)
T ss_pred CCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEE
Confidence 56655 55567888887754 577888888889998775332 3455688999998874
No 158
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=46.54 E-value=1.1e+02 Score=27.45 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=37.7
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004840 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (728)
Q Consensus 23 VKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~G 65 (728)
|-..||+.-.+.+.+.+||.++-.++.++.|+.++.-.++.-|
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g 46 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVG 46 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEec
Confidence 4567888889999999999999999999999999888776655
No 159
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=45.19 E-value=1e+02 Score=25.93 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=37.7
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
+|+.+.+ ....||.+|.+.+ ++......+-.+++.+..+ .-.++-+++|+.|.++-
T Consensus 6 Ng~~~~~--~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 6 NDQPMQC--AAGQTVHELLEQL----NQLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_pred CCeEEEc--CCCCCHHHHHHHc----CCCCCcEEEEECCEEeChH-HcCccccCCCCEEEEEE
Confidence 4566554 5678899888754 4455556777888887422 23455688999998874
No 160
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=45.19 E-value=70 Score=26.67 Aligned_cols=56 Identities=14% Similarity=0.335 Sum_probs=39.4
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
+|+.+. +....||.+|.+++ +++++...+.++|+.+..+ .-.++-+++|+.|.++-
T Consensus 4 Ng~~~~--~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 4 NGEPVE--VEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVT 59 (64)
T ss_pred CCeEEE--cCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEE
Confidence 566554 45678999988865 5666777778899887432 23456789999998874
No 161
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=43.40 E-value=11 Score=41.61 Aligned_cols=50 Identities=32% Similarity=0.430 Sum_probs=43.9
Q ss_pred eCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcccc
Q 004840 25 TLDSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLL 74 (728)
Q Consensus 25 tLdGKt~tLeVd-psdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TL 74 (728)
..+|.+..+.+. ....|..||.+|....+|+++.|++.|.|..|+|...+
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 456888888777 78889999999999999999999999999999998544
No 162
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.28 E-value=76 Score=34.81 Aligned_cols=71 Identities=13% Similarity=0.114 Sum_probs=54.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCC---ccccccccccCCcEEEE
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHM 87 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--F~GKvLkD---d~TLsdYGIkdGsTLhL 87 (728)
....|.||..||++++..+....++..|+..|..+++...+-..|. |--+.+.+ .++|..+++..-.+|.+
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 5678999999999999999999999999999999988755333332 44455532 26788888877766654
No 163
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.02 E-value=11 Score=43.41 Aligned_cols=58 Identities=19% Similarity=0.254 Sum_probs=50.3
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEe
Q 004840 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (728)
Q Consensus 33 LeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR 90 (728)
++.....|=.+|..+|+++.||+-...|.|.+||+|...+||.+-|++....+.+++.
T Consensus 54 ~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 54 KKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred hhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 4555677788999999999999999999999999999999999999988776666554
No 164
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=37.65 E-value=11 Score=36.40 Aligned_cols=32 Identities=9% Similarity=-0.072 Sum_probs=28.2
Q ss_pred ccccccccccchhccccccc-cCCCCchhHHHH
Q 004840 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIV 140 (728)
Q Consensus 109 Titl~V~pSdTVesLK~kIQ-~EGIPpDQQRLI 140 (728)
++.++++.+.+|.+||.+|+ -...||+.|||+
T Consensus 13 TiF~dakes~tVlelK~~iegI~k~pp~dQrL~ 45 (119)
T cd01788 13 TIFTDAKESTTVYELKRIVEGILKRPPEDQRLY 45 (119)
T ss_pred EEEeecCCcccHHHHHHHHHHHhcCChhHheee
Confidence 35578999999999999999 777899999996
No 165
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=37.44 E-value=37 Score=38.12 Aligned_cols=68 Identities=18% Similarity=0.150 Sum_probs=53.6
Q ss_pred CcEE-EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC-CCCCCeEEEeCC---eec--CCccccccccccCCcE
Q 004840 17 TTIE-IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG-VLSEQQRLICRG---KVL--KDDQLLSAYHVEDGHT 84 (728)
Q Consensus 17 ssMq-ItVKtLdGKt~tLeVdpsdTV~dLKekIeektG-IPpeqQRLIF~G---KvL--kDd~TLsdYGIkdGsT 84 (728)
..++ |.|++.+|+.....+.+.++|..|-..++.... .+-+..+|++.= |.| +.+.||.++||.+-.+
T Consensus 275 svvt~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 275 SVVTSIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred cceeEEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 3344 999999999888888899999998888776654 555777998876 666 4568999999988765
No 166
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=37.20 E-value=65 Score=29.17 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=32.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004840 30 TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (728)
Q Consensus 30 t~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~G 65 (728)
++.|.+.+..+..+|..+|.+|...+++.-+|-|+-
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 456788999999999999999999999999999854
No 167
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=36.63 E-value=2.2e+02 Score=24.78 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=30.8
Q ss_pred EEecC-CCCHHHHHHHHHHHhCC-----CCCCeEEEeCCeecCCccccccccccCCcEEEEE
Q 004840 33 LRVDK-QVPVPALKEQIASVTGV-----LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 33 LeVdp-sdTV~dLKekIeektGI-----PpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLV 88 (728)
++++. ..||.+|++.|.+++.- .....++..+++... .++-|++|+.|-++
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~-----~~~~l~dgDeVai~ 75 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVS-----FDHPLTDGDEVAFF 75 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcC-----CCCCCCCCCEEEEe
Confidence 44433 47999999999887521 112223333443322 24568899998876
No 168
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=36.11 E-value=89 Score=28.53 Aligned_cols=55 Identities=36% Similarity=0.507 Sum_probs=34.7
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-C------eecCCc---ccc--ccccccCCcEEEEEE
Q 004840 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICR-G------KVLKDD---QLL--SAYHVEDGHTLHMVV 89 (728)
Q Consensus 33 LeVdpsdTV~dLKekIeektGIPpeqQRLIF~-G------KvLkDd---~TL--sdYGIkdGsTLhLVl 89 (728)
+.++...||.+|-+.|.+++ +....+|+.. | .+|-++ ..| .+|.+++|+.|.++-
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P 89 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFIS 89 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEEC
Confidence 34445789999999998876 3334444443 2 223222 234 468899999998873
No 169
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=35.98 E-value=1.2e+02 Score=29.23 Aligned_cols=52 Identities=2% Similarity=0.182 Sum_probs=42.4
Q ss_pred CcEEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec
Q 004840 17 TTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL 68 (728)
Q Consensus 17 ssMqItVKtLdG----Kt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvL 68 (728)
..+.|.+|...+ |.-.+.|++++|+..+-..|.+..+++..++-.+|=..-.
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 567777777653 4556789999999999999999999999999888866554
No 170
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=35.38 E-value=61 Score=29.33 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=38.8
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCC-------CeEEEeCCe-ec------CCccccccccccCCcEEEEEE
Q 004840 33 LRVDKQVPVPALKEQIASVTGVLSE-------QQRLICRGK-VL------KDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 33 LeVdpsdTV~dLKekIeektGIPpe-------qQRLIF~GK-vL------kDd~TLsdYGIkdGsTLhLVl 89 (728)
|+|++++|+.+|-+.++++..+-.. .-.|++.+- .| .-+++|.++ +.+|..|++.-
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD 70 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTD 70 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEEC
Confidence 5789999999999999987544333 334444432 12 125789999 99999998854
No 171
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=34.52 E-value=44 Score=30.12 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHH-HhCCCCC----CeEEEeCCee----cCCccccccccccCCcEEEEEE
Q 004840 37 KQVPVPALKEQIAS-VTGVLSE----QQRLICRGKV----LKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 37 psdTV~dLKekIee-ktGIPpe----qQRLIF~GKv----LkDd~TLsdYGIkdGsTLhLVl 89 (728)
..+|+.+|-++|-+ +.|+... .-+++|.... -...++|+++||.+|+.|.+.-
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D 68 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDD 68 (87)
T ss_dssp TT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEE
T ss_pred hhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEE
Confidence 46899999988744 5564331 3345554332 1235789999999999888764
No 172
>PRK07440 hypothetical protein; Provisional
Probab=34.33 E-value=2.1e+02 Score=24.75 Aligned_cols=62 Identities=18% Similarity=0.343 Sum_probs=42.5
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 18 sMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
+|+|+| +|+. +++....||.+|-+ ..++.++..-+.++|+.+.-+ ...++-+++||.|.++-
T Consensus 4 ~m~i~v---NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 4 PITLQV---NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIVT 65 (70)
T ss_pred ceEEEE---CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEE
Confidence 455555 4565 45566789888775 346777777788899887522 23566788999998874
No 173
>PRK01777 hypothetical protein; Validated
Probab=33.59 E-value=2.3e+02 Score=26.28 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=42.7
Q ss_pred CcEEEEEEeCC-C--cEEEEEecCCCCHHHHHHHHHHHhCCCCC--C-----eEEEeCCeecCCccccccccccCCcEEE
Q 004840 17 TTIEIKIKTLD-S--QTYTLRVDKQVPVPALKEQIASVTGVLSE--Q-----QRLICRGKVLKDDQLLSAYHVEDGHTLH 86 (728)
Q Consensus 17 ssMqItVKtLd-G--Kt~tLeVdpsdTV~dLKekIeektGIPpe--q-----QRLIF~GKvLkDd~TLsdYGIkdGsTLh 86 (728)
.+|+|.|.+.. . +.+.+++....||.++-+.+ ||+.+ + -++.-.||..+. ++-+++|+.|-
T Consensus 2 ~~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVe 72 (95)
T PRK01777 2 GKIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVE 72 (95)
T ss_pred CeeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEE
Confidence 36888887743 2 23567889999999887654 55444 2 345556665543 45678899998
Q ss_pred EEE
Q 004840 87 MVV 89 (728)
Q Consensus 87 LVl 89 (728)
++-
T Consensus 73 Iyr 75 (95)
T PRK01777 73 IYR 75 (95)
T ss_pred Eec
Confidence 874
No 174
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=33.08 E-value=1.8e+02 Score=27.50 Aligned_cols=47 Identities=21% Similarity=0.128 Sum_probs=35.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEE-EeCC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRL-ICRG 65 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPp-eqQRL-IF~G 65 (728)
..|.|-..|+...++.+..+.||.+|-..+.+|+-++. +.-+| ++.|
T Consensus 3 y~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~ 51 (97)
T cd01775 3 YCIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKH 51 (97)
T ss_pred eEEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEEC
Confidence 45666666777788999999999999999999998876 33333 4444
No 175
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=31.93 E-value=89 Score=28.85 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=37.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR 60 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQR 60 (728)
++|.|-..+|..+.++|..+++..++-+.+..+.+++.+-.+
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 467788888999999999999999999999999999876543
No 176
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=29.76 E-value=97 Score=31.30 Aligned_cols=54 Identities=17% Similarity=0.341 Sum_probs=35.5
Q ss_pred CcEEEEEEeCCCcEEEEEecC-CCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccc
Q 004840 17 TTIEIKIKTLDSQTYTLRVDK-QVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAY 77 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdp-sdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdY 77 (728)
..|.|+|+. |+ +-+++.. .+.+.++++.+++.+.++.+ +..|+-++...|+.||
T Consensus 66 ~~veL~V~v--Gr-i~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 66 EEVELTVKV--GR-IILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEEEEEEE--eE-EEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhh
Confidence 345666666 33 4466666 56677777666665533322 4579999999999988
No 177
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=29.70 E-value=1.6e+02 Score=26.36 Aligned_cols=61 Identities=16% Similarity=0.274 Sum_probs=37.4
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-CCCCCeEEEeCCeecCCc--ccc-ccccc----cCCcEEEEEEec
Q 004840 29 QTYTLRVDKQVPVPALKEQIASVTG-VLSEQQRLICRGKVLKDD--QLL-SAYHV----EDGHTLHMVVRQ 91 (728)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIeektG-IPpeqQRLIF~GKvLkDd--~TL-sdYGI----kdGsTLhLVlR~ 91 (728)
++|-+-.+++.||.+|++.|.+++. +.|....+.. ..|+|+ ..| -+|-+ ..+++|.++++.
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I--~~LQD~~~cDLD~d~~V~DVf~~~~~vrvi~~n 71 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEI--LSLQDSDGCDLDPDFLVKDVFNSNNVVRVILKN 71 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceE--EEeecCCCCCCCcccEeeeeeccCCEEEEEecC
Confidence 4555567899999999999998876 4555444432 123222 222 13332 367888888764
No 178
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=29.60 E-value=1.4e+02 Score=27.21 Aligned_cols=40 Identities=13% Similarity=0.023 Sum_probs=35.2
Q ss_pred EEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE
Q 004840 22 KIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRL 61 (728)
Q Consensus 22 tVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRL 61 (728)
.|...+|+..++.|.+++|+.++-+.++++.++.|..-.|
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~L 42 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYL 42 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHhee
Confidence 4677899999999999999999999999999998866544
No 179
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=29.37 E-value=64 Score=30.40 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=22.5
Q ss_pred EEEeCCeecCCccccccccccCC--cEEEEEEecC
Q 004840 60 RLICRGKVLKDDQLLSAYHVEDG--HTLHMVVRQP 92 (728)
Q Consensus 60 RLIF~GKvLkDd~TLsdYGIkdG--sTLhLVlR~p 92 (728)
.|-|.||.|..+.+|++| |..+ ..|.+-+.+.
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiivKl~~~ 36 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIVKLQKR 36 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEEEeccC
Confidence 578999999999999999 4333 3444444333
No 180
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=28.30 E-value=1.4e+02 Score=33.37 Aligned_cols=58 Identities=14% Similarity=0.208 Sum_probs=42.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEec
Q 004840 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~ 91 (728)
+|+.+ ++....||.+|-+. .+++++...+.++|+.+.. ....++-|++||.|.++--.
T Consensus 6 NGk~~--el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr-~~w~~t~LkeGD~IEII~~V 63 (326)
T PRK11840 6 NGEPR--QVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPR-SEYGQVALEEGDELEIVHFV 63 (326)
T ss_pred CCEEE--ecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCH-HHcCccccCCCCEEEEEEEe
Confidence 56654 45567888877764 4788888888999999842 23467779999999998644
No 181
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=28.25 E-value=1.8e+02 Score=26.12 Aligned_cols=53 Identities=23% Similarity=0.336 Sum_probs=40.3
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-eCCeecCCccccccccccCCcEEEEEE
Q 004840 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-CRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI-F~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
++.+.+.++...||+++-+ ..|+|..+..++ .+|+...- +|-+++|+.|.+.-
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 3567788889999888765 579999888665 47876543 47888999998864
No 182
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=28.10 E-value=1.5e+02 Score=27.13 Aligned_cols=43 Identities=9% Similarity=0.020 Sum_probs=35.9
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe
Q 004840 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC 63 (728)
Q Consensus 20 qItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF 63 (728)
+.+||. +|.+..+.+...-+-..|++||+..+.+|....-|.|
T Consensus 2 ~fKv~~-~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 2 QFKSSF-LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred eEEEEe-CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 467776 5777778888888999999999999999987777777
No 183
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=27.18 E-value=1.4e+02 Score=31.65 Aligned_cols=45 Identities=27% Similarity=0.422 Sum_probs=33.5
Q ss_pred cEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE
Q 004840 18 TIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI 62 (728)
Q Consensus 18 sMqItVKtLd---GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI 62 (728)
.+.|+++... ...|+++++..+|-.+|-++|+++.++.|...||.
T Consensus 176 rv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 176 RVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp EEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred eEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 3667776543 34899999999999999999999999999999885
No 184
>KOG4261 consensus Talin [Cytoskeleton]
Probab=27.07 E-value=85 Score=38.82 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=72.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC---CCCCCeEEEe------CCeecCCccccccccccCCcEEEEEE
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG---VLSEQQRLIC------RGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektG---IPpeqQRLIF------~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
+.++|... +-+.++.+.|+.+|.+--+.|.+++- .-+.+..|+. +|-.|+...+|.+|-+.++++|..-.
T Consensus 4 lsl~i~~~-~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~ 82 (1003)
T KOG4261|consen 4 LSLKISSA-NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKR 82 (1003)
T ss_pred eEEEEEec-ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhh
Confidence 44555553 55667899999999997777776643 1245555543 56678999999999999999987643
Q ss_pred ecCCCCCCCCCCCCCCCCCccccccccccchhccccccc-cCCC
Q 004840 90 RQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGV 132 (728)
Q Consensus 90 R~p~s~sss~~qIfVltGkTitl~V~pSdTVesLK~kIQ-~EGI 132 (728)
+... ..+-.+.|...++.|+-+..|.+|.+-|= +.||
T Consensus 83 k~r~------lkvrmldg~vkti~vd~sq~v~~L~~~ic~~igI 120 (1003)
T KOG4261|consen 83 KQRP------LKVRMLDGAVKTIMVDDSQPVSQLMMTICNKIGI 120 (1003)
T ss_pred hccc------ceeeecccccceeeecccccHHHHHHHHHhccCc
Confidence 3221 11222566667777777777777776665 6666
No 185
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=26.88 E-value=2.2e+02 Score=26.12 Aligned_cols=40 Identities=25% Similarity=0.439 Sum_probs=33.9
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCee
Q 004840 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGKV 67 (728)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIeektGIPpeqQR-LIF~GKv 67 (728)
...++|.|++.+|=.++|+.|+..+++.+...+ +++.||.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 578999999999999999999999999987764 4566654
No 186
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=26.44 E-value=1.5e+02 Score=28.02 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=29.0
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 004840 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS 56 (728)
Q Consensus 20 qItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPp 56 (728)
.|+|-..+|.+..|.|....+-.++|+++-+|+|+..
T Consensus 2 vi~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 2 VIRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 3677778999999999999999999999999999876
No 187
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=25.15 E-value=1.3e+02 Score=30.38 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=35.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccc
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAY 77 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdY 77 (728)
..|.|+|+. |+ +-+++...+.+.++++.+.+.+-++. -+..|+-++...|+.||
T Consensus 65 ~~veL~V~V--Gr-I~le~~~~~~i~~I~eiC~e~~pF~y----~i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 65 EDVELRVQV--GR-IILELEDEDIVEEIEEICKEMLPFGY----EVRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEEEEEEEE--eE-EEEEecCHHHHHHHHHHHHhhCCCce----EeeeeeEeecCCchhhh
Confidence 345666665 33 33555566677777776666554332 25678889999999988
No 188
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=24.95 E-value=1.6e+02 Score=26.98 Aligned_cols=45 Identities=9% Similarity=0.177 Sum_probs=35.3
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEeC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLICR 64 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpe-qQRLIF~ 64 (728)
++|++.. +|..+.+.+++..+..+|.+++.+.+....+ ...+.|.
T Consensus 1 i~~K~~y-~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~ 46 (83)
T cd06404 1 VRVKAAY-NGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWI 46 (83)
T ss_pred CeEEEEe-cCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 3566666 6888889999999999999999999988653 3355443
No 189
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=24.76 E-value=2.1e+02 Score=25.88 Aligned_cols=64 Identities=19% Similarity=0.313 Sum_probs=40.0
Q ss_pred EEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeecCCccccccccccCCcEEEEEEe
Q 004840 21 IKIKTLD-SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (728)
Q Consensus 21 ItVKtLd-GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF--~GKvLkDd~TLsdYGIkdGsTLhLVlR 90 (728)
++|+..+ .+.+-|-. .++.+|+.|..+++.++.+.-+|+. +|..++|+.-+.. + +..|+.+++.
T Consensus 5 ~kv~~~~r~~k~Gv~A---~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t--L-p~nT~lm~L~ 71 (78)
T PF02017_consen 5 FKVRNHDRSVKKGVAA---SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT--L-PDNTVLMLLE 71 (78)
T ss_dssp EEEEETTSSCEEEEEE---SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC--S-SSSEEEEEEE
T ss_pred EEEecCCCCceEeEEc---CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh--C-CCCCEEEEEC
Confidence 4555544 23333444 6899999999999999977766654 6887776643322 2 3455555554
No 190
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=24.52 E-value=2.7e+02 Score=24.27 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=36.7
Q ss_pred EEEEEEe-CCCcEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEE--e-CC--eecCCc
Q 004840 19 IEIKIKT-LDSQTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLI--C-RG--KVLKDD 71 (728)
Q Consensus 19 MqItVKt-LdGKt~tLeVdpsdTV~dLKekIeektGIPp--eqQRLI--F-~G--KvLkDd 71 (728)
++|+.-. .++...+|.|..++|+.+|-+.+.+|+++.. +.-.|+ + .| +.|.++
T Consensus 5 lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~ 65 (90)
T smart00314 5 LRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDD 65 (90)
T ss_pred EEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCC
Confidence 4444432 2266778999999999999999999999864 455553 2 34 455543
No 191
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=24.15 E-value=1.6e+02 Score=32.38 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=45.1
Q ss_pred EEEecCCCCHHHHHHHHHHHh--------------C-CCCCCeEEEeCCeecCCcccccccc---ccCCcEEEEEEecC
Q 004840 32 TLRVDKQVPVPALKEQIASVT--------------G-VLSEQQRLICRGKVLKDDQLLSAYH---VEDGHTLHMVVRQP 92 (728)
Q Consensus 32 tLeVdpsdTV~dLKekIeekt--------------G-IPpeqQRLIF~GKvLkDd~TLsdYG---IkdGsTLhLVlR~p 92 (728)
.|......-|..|+..|.+++ . .+.+...|+|+|++|..+.||+-.. =+.+.-|.|..|..
T Consensus 251 rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k 329 (331)
T PF11816_consen 251 RLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRK 329 (331)
T ss_pred eecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEec
Confidence 345555667899999999988 2 3446679999999999998887553 36677777776643
No 192
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=23.97 E-value=2.5e+02 Score=26.29 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=33.4
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCe
Q 004840 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGK 66 (728)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIeektGIPpeqQR-LIF~GK 66 (728)
+..+++|.|+++.|=.++|+.|++.+++-+.... |+..|+
T Consensus 20 ~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k 60 (94)
T COG0089 20 KENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGK 60 (94)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCc
Confidence 4578999999999999999999999999887764 445553
No 193
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.87 E-value=5.5e+02 Score=24.36 Aligned_cols=74 Identities=24% Similarity=0.323 Sum_probs=44.7
Q ss_pred CcEEEEEEeCCC--------cEEEEEec---CCCCHHHHHHHHHHHhCCCCCCeEEEeCCe------ec-C--Ccccc--
Q 004840 17 TTIEIKIKTLDS--------QTYTLRVD---KQVPVPALKEQIASVTGVLSEQQRLICRGK------VL-K--DDQLL-- 74 (728)
Q Consensus 17 ssMqItVKtLdG--------Kt~tLeVd---psdTV~dLKekIeektGIPpeqQRLIF~GK------vL-k--Dd~TL-- 74 (728)
+.+.++|..+.| |.+.+..+ ...||.+|-..|..++=-.+++ -++..|. +| . |-..|
T Consensus 3 ~~~~vkvef~Gg~dllfn~~k~~~~~l~~~e~~~tvgdll~yi~~~~ie~r~~-lFi~~gsvrpGii~lINd~DWEllek 81 (101)
T KOG4146|consen 3 EAHEVKVEFLGGLDLLFNKQKIHLTRLEVGESPATVGDLLDYIFGKYIETRDS-LFIHHGSVRPGIIVLINDMDWELLEK 81 (101)
T ss_pred cceeEEEEEcCceeeeECCeEEEEEecccCCCcccHHHHHHHHHHHHhcCCcc-eEeeCCcCcCcEEEEEeccchhhhcc
Confidence 457888887754 22223332 4578999988888765333333 4444553 23 2 22333
Q ss_pred ccccccCCcEEEEEEec
Q 004840 75 SAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 75 sdYGIkdGsTLhLVlR~ 91 (728)
.+|.+++|+.|.++-+.
T Consensus 82 edy~ledgD~ivfiSTl 98 (101)
T KOG4146|consen 82 EDYPLEDGDHIVFISTL 98 (101)
T ss_pred cccCcccCCEEEEEEec
Confidence 58999999999887553
No 194
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=23.27 E-value=3.3e+02 Score=23.26 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=37.8
Q ss_pred CCcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 27 DSQTYTLRVDKQ-VPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 27 dGKt~tLeVdps-dTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
+|+.+.+ ... .||.+|-+ ..++.++..-+.++++.+.-+ ...++-+++|+.|.++-
T Consensus 6 NG~~~~~--~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 6 NGNQIEV--PESVKTVAELLT----HLELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVT 62 (67)
T ss_pred CCEEEEc--CCCcccHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEE
Confidence 5666544 444 57777665 356777777778899888533 23556689999998874
No 195
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=22.71 E-value=13 Score=32.91 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=26.8
Q ss_pred ccccccccchhccccccc-cCCCCchhHHHH
Q 004840 111 GSHVAPSVVIETFNLPDR-GDGVPSEISQIV 140 (728)
Q Consensus 111 tl~V~pSdTVesLK~kIQ-~EGIPpDQQRLI 140 (728)
...+.++.||.+||.+++ ..|++++.|||.
T Consensus 16 ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~ 46 (84)
T cd01789 16 EKKYSRGLTIAELKKKLELVVGTPASSMRLQ 46 (84)
T ss_pred eEecCCCCcHHHHHHHHHHHHCCCccceEEE
Confidence 345888999999999999 899999999994
No 196
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform
Probab=22.50 E-value=2e+02 Score=27.21 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=48.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCC---CCeEEEeCCeecCCcc-ccccccccCCcEEEEEEecCCC
Q 004840 30 TYTLRVDKQVPVPALKEQIASVTGVLS---EQQRLICRGKVLKDDQ-LLSAYHVEDGHTLHMVVRQPVP 94 (728)
Q Consensus 30 t~tLeVdpsdTV~dLKekIeektGIPp---eqQRLIF~GKvLkDd~-TLsdYGIkdGsTLhLVlR~p~s 94 (728)
..++.-....|+.++-+.+.++.++.. =.+..|+.++.|.... .|-.+++..+ ++.+.+|.+..
T Consensus 22 k~~l~~~~~~t~~~~l~~l~~~l~lh~VevIg~E~I~A~~ll~~~~~~L~H~~~~~~-~l~l~vrs~~~ 89 (104)
T PF14807_consen 22 KQNLPSSSQRTLPEFLQRLQQKLRLHVVEVIGNEGIFACQLLNSSPVCLLHCRVNAG-TLDLWVRSSDS 89 (104)
T ss_pred EEeccccCcCCHHHHHHHHHHhcCceEEEEeCccceeeeeccCCCCeEEEEEEecCC-eEEEEEEcCCC
Confidence 334433466889999888888877432 3347899999998776 8999999877 99999986643
No 197
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=21.98 E-value=1.4e+02 Score=29.14 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=44.2
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcccccccc---ccCCcEEEEEEe
Q 004840 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYH---VEDGHTLHMVVR 90 (728)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYG---IkdGsTLhLVlR 90 (728)
+..-+-|..+.||.+|+..|..+.++.+++.-|+.++..+....++++.- -.++..|++...
T Consensus 41 K~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Ys 105 (121)
T PTZ00380 41 KVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVSVR 105 (121)
T ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEEEc
Confidence 33334699999999999999999999998854455665666666776542 223557777654
No 198
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=21.78 E-value=1.7e+02 Score=26.61 Aligned_cols=41 Identities=27% Similarity=0.419 Sum_probs=34.9
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCeecC
Q 004840 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGKVLK 69 (728)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIeektGIPpeqQR-LIF~GKvLk 69 (728)
..+++.|++++|=.++|+.|+..+++.+...+ +.+.||.-.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceE
Confidence 67999999999999999999999999987664 467777543
No 199
>CHL00030 rpl23 ribosomal protein L23
Probab=20.48 E-value=2.5e+02 Score=26.03 Aligned_cols=39 Identities=23% Similarity=0.165 Sum_probs=32.3
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE-EeCCe
Q 004840 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRL-ICRGK 66 (728)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRL-IF~GK 66 (728)
...|++.|+.+.|=.++|+.|+..+++.+...+. ...|+
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k 58 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRK 58 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCC
Confidence 4789999999999999999999999998766643 44454
No 200
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=20.26 E-value=11 Score=33.24 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=28.4
Q ss_pred Cccccccccccchhccccccc-cCCCCchhHHHHH
Q 004840 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (728)
Q Consensus 108 kTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIF 141 (728)
+.....+..+.||.+||.+++ ..|+|++.|+|.+
T Consensus 14 ~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l 48 (87)
T PF14560_consen 14 RSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQL 48 (87)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEE
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEE
Confidence 345578889999999999999 9999999999944
Done!