Query 004840
Match_columns 728
No_of_seqs 297 out of 1539
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 07:28:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004840.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004840hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u30_A Ubiquitin, linear DI-ub 99.9 1.5E-23 5.3E-28 199.7 6.3 126 13-143 15-143 (172)
2 3rt3_B Ubiquitin-like protein 99.9 3.7E-23 1.3E-27 193.9 5.2 122 18-143 2-128 (159)
3 3b08_A Polyubiquitin-C, ubiqui 99.8 1.2E-21 4.3E-26 180.0 5.3 119 19-142 1-122 (152)
4 4dwf_A HLA-B-associated transc 99.7 1.2E-17 4E-22 143.1 11.1 80 16-96 3-82 (90)
5 3phx_B Ubiquitin-like protein 99.7 1.6E-17 5.5E-22 138.9 10.6 76 17-92 3-78 (79)
6 4hcn_B Polyubiquitin, ubiquiti 99.7 1.5E-17 5.2E-22 145.9 9.3 81 12-92 16-96 (98)
7 3v6c_B Ubiquitin; structural g 99.7 2.7E-17 9.3E-22 141.8 10.7 79 13-91 12-90 (91)
8 3plu_A Ubiquitin-like modifier 99.7 3.1E-17 1E-21 145.9 10.0 76 14-89 17-92 (93)
9 1uh6_A Ubiquitin-like 5; beta- 99.7 4.4E-17 1.5E-21 146.4 10.2 79 11-89 21-99 (100)
10 3dbh_I NEDD8; cell cycle, acti 99.7 4.4E-17 1.5E-21 138.0 9.5 79 14-92 8-86 (88)
11 2kdi_A Ubiquitin, vacuolar pro 99.7 2.1E-17 7.2E-22 149.8 7.9 102 16-122 7-113 (114)
12 1wx8_A Riken cDNA 4931431F19; 99.7 5.4E-17 1.9E-21 141.0 9.9 90 4-94 3-92 (96)
13 2wyq_A HHR23A, UV excision rep 99.7 8.7E-17 3E-21 135.6 10.6 79 16-94 3-84 (85)
14 4eew_A Large proline-rich prot 99.7 8E-17 2.7E-21 137.4 10.4 75 15-90 14-88 (88)
15 2dzi_A Ubiquitin-like protein 99.7 1.1E-16 3.7E-21 133.4 10.2 78 15-92 4-81 (81)
16 2faz_A Ubiquitin-like containi 99.7 1E-16 3.5E-21 133.4 10.0 75 18-92 2-78 (78)
17 3m62_B UV excision repair prot 99.7 4.2E-17 1.4E-21 145.8 7.5 78 18-95 1-78 (106)
18 1wx7_A Ubiquilin 3; ubiquitin- 99.7 3.2E-16 1.1E-20 139.3 13.1 86 9-95 8-93 (106)
19 4fbj_B NEDD8; effector-HOST ta 99.7 9.8E-17 3.3E-21 138.2 9.3 75 19-93 1-75 (88)
20 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 2.1E-16 7.2E-21 134.1 10.9 78 15-92 4-81 (87)
21 1wy8_A NP95-like ring finger p 99.7 3.2E-16 1.1E-20 133.7 12.1 79 16-94 5-85 (89)
22 3n3k_B Ubiquitin; hydrolase, p 99.7 1.2E-16 4E-21 134.3 8.8 76 17-92 2-77 (85)
23 1ttn_A DC-UBP, dendritic cell- 99.7 1.2E-16 4.2E-21 142.3 9.4 81 14-94 19-99 (106)
24 3mtn_B UBA80, ubcep1, ubiquiti 99.7 1.8E-16 6.2E-21 132.9 9.9 76 17-92 2-77 (85)
25 2kk8_A Uncharacterized protein 99.7 1.5E-16 5.2E-21 136.9 9.5 75 16-90 8-83 (84)
26 1ndd_A NEDD8, protein (ubiquit 99.7 2.2E-16 7.6E-21 129.2 10.0 74 19-92 1-74 (76)
27 1uel_A HHR23B, UV excision rep 99.7 4.1E-16 1.4E-20 136.1 11.6 78 19-96 1-81 (95)
28 2uyz_B Small ubiquitin-related 99.7 2.4E-16 8.3E-21 131.7 9.4 76 17-92 2-77 (79)
29 4a20_A Ubiquitin-like protein 99.7 2.1E-16 7.1E-21 140.9 9.0 78 15-92 16-97 (98)
30 2hj8_A Interferon-induced 17 k 99.7 2.4E-16 8.3E-21 135.5 9.0 76 17-92 3-78 (88)
31 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 3.8E-16 1.3E-20 135.0 10.1 74 19-92 2-75 (96)
32 3a9j_A Ubiquitin; protein comp 99.6 4.7E-16 1.6E-20 127.2 10.1 74 19-92 1-74 (76)
33 1wyw_B Ubiquitin-like protein 99.6 3.1E-16 1.1E-20 137.7 9.6 79 14-92 17-95 (97)
34 1wgd_A Homocysteine-responsive 99.6 4.6E-16 1.6E-20 134.8 9.9 79 16-94 5-89 (93)
35 2lxa_A Ubiquitin-like protein 99.6 1.5E-16 5.3E-21 138.8 6.8 75 18-92 1-79 (87)
36 2bwf_A Ubiquitin-like protein 99.6 1.1E-15 3.6E-20 126.3 10.5 73 18-91 4-76 (77)
37 1wia_A Hypothetical ubiquitin- 99.6 1.1E-15 3.6E-20 132.9 10.1 80 14-96 3-83 (95)
38 1yqb_A Ubiquilin 3; structural 99.6 1.3E-15 4.4E-20 135.0 10.5 81 14-95 18-98 (100)
39 2kan_A Uncharacterized protein 99.6 1.4E-15 4.8E-20 133.4 10.5 77 16-93 13-90 (94)
40 2klc_A Ubiquilin-1; ubiquitin- 99.6 1.7E-15 6E-20 134.2 11.1 78 15-93 22-99 (101)
41 1wgh_A Ubiquitin-like 3, HCG-1 99.6 2.8E-15 9.7E-20 137.6 12.7 85 11-95 9-103 (116)
42 1yx5_B Ubiquitin; proteasome, 99.6 1.6E-15 5.5E-20 132.4 10.3 74 19-92 1-74 (98)
43 1sif_A Ubiquitin; hydrophobic 99.6 1.1E-15 3.9E-20 131.6 9.1 75 18-92 9-83 (88)
44 2l7r_A Ubiquitin-like protein 99.6 8.4E-16 2.9E-20 134.0 8.0 75 16-92 17-91 (93)
45 3vdz_A Ubiquitin-40S ribosomal 99.6 2.2E-15 7.5E-20 135.6 10.4 76 17-92 34-109 (111)
46 1j8c_A Ubiquitin-like protein 99.6 5.5E-15 1.9E-19 136.3 12.8 79 16-95 30-108 (125)
47 1v5o_A 1700011N24RIK protein; 99.6 2.2E-15 7.5E-20 133.4 9.8 80 17-96 6-90 (102)
48 1v2y_A 3300001G02RIK protein; 99.6 1.4E-15 4.8E-20 137.5 8.6 79 16-94 5-99 (105)
49 3b1l_X E3 ubiquitin-protein li 99.4 8.4E-17 2.9E-21 133.1 0.0 74 19-92 1-74 (76)
50 1v86_A DNA segment, CHR 7, way 99.6 3.1E-15 1.1E-19 131.2 9.2 80 12-93 11-90 (95)
51 1wxv_A BAG-family molecular ch 99.6 6.8E-15 2.3E-19 127.1 10.7 78 16-94 5-88 (92)
52 1x1m_A Ubiquitin-like protein 99.6 4.4E-15 1.5E-19 132.7 9.2 80 16-95 10-104 (107)
53 3rt3_B Ubiquitin-like protein 99.6 7.4E-15 2.5E-19 137.6 10.8 77 16-92 79-155 (159)
54 2ojr_A Ubiquitin; lanthide-bin 99.6 1.1E-14 3.9E-19 130.6 11.2 77 16-92 33-109 (111)
55 1wju_A NEDD8 ultimate buster-1 99.6 6.5E-15 2.2E-19 132.3 9.4 76 18-94 15-94 (100)
56 1v5t_A 8430435I17RIK protein; 99.6 5.8E-15 2E-19 128.0 8.7 76 16-92 5-84 (90)
57 1wgg_A Ubiquitin carboxyl-term 99.6 8E-15 2.7E-19 129.2 9.3 75 16-92 5-80 (96)
58 2daf_A FLJ35834 protein; hypot 99.6 4.2E-14 1.4E-18 130.5 14.0 81 14-94 11-92 (118)
59 3l0w_B Monoubiquitinated proli 99.6 1.1E-14 3.9E-19 140.3 10.7 75 19-93 1-75 (169)
60 1we6_A Splicing factor, putati 99.5 8.7E-15 3E-19 131.2 8.2 77 16-92 25-105 (111)
61 2gow_A HCG-1 protein, ubiquiti 99.5 1.3E-14 4.5E-19 134.7 9.5 79 16-94 15-103 (125)
62 2kdb_A Homocysteine-responsive 99.5 6.2E-15 2.1E-19 131.5 7.0 75 14-88 19-99 (99)
63 3m63_B Ubiquitin domain-contai 99.5 2.9E-15 9.9E-20 133.1 4.5 74 17-91 27-100 (101)
64 2fnj_B Transcription elongatio 99.5 1E-14 3.4E-19 134.7 8.0 70 19-90 3-80 (118)
65 3q3f_A Ribonuclease/ubiquitin 99.5 1.6E-14 5.6E-19 142.4 9.7 77 16-92 103-179 (189)
66 4ajy_B Transcription elongatio 99.5 1.5E-14 5E-19 133.6 8.5 73 19-91 1-81 (118)
67 4dbg_A Ranbp-type and C3HC4-ty 99.5 3.3E-14 1.1E-18 128.8 10.5 79 14-92 20-101 (105)
68 1se9_A Ubiquitin family; ubiqu 99.5 3.3E-14 1.1E-18 132.5 9.6 77 17-93 15-105 (126)
69 2kd0_A LRR repeats and ubiquit 99.5 6.5E-14 2.2E-18 120.4 10.1 73 17-90 11-83 (85)
70 3u30_A Ubiquitin, linear DI-ub 99.5 4.2E-14 1.4E-18 134.7 9.0 76 17-92 95-170 (172)
71 1we7_A SF3A1 protein; structur 99.5 7.5E-14 2.6E-18 126.0 9.9 76 17-92 24-109 (115)
72 3b08_A Polyubiquitin-C, ubiqui 99.5 1.1E-13 3.8E-18 127.0 11.1 76 17-92 75-150 (152)
73 3u5e_m 60S ribosomal protein L 99.5 3.5E-15 1.2E-19 137.2 0.0 74 19-92 1-74 (128)
74 4b6w_A Tubulin-specific chaper 99.5 6.1E-14 2.1E-18 122.0 7.0 74 19-92 3-85 (86)
75 2dzm_A FAS-associated factor 1 99.4 3.7E-13 1.3E-17 120.6 9.4 74 18-92 8-83 (100)
76 1oqy_A HHR23A, UV excision rep 99.4 1.4E-13 4.7E-18 147.7 7.8 77 16-92 5-85 (368)
77 3u5c_f 40S ribosomal protein S 99.4 1.9E-14 6.6E-19 137.3 0.0 76 19-94 1-76 (152)
78 2kjr_A CG11242; UBL, ubiquitin 99.4 6.8E-13 2.3E-17 117.4 9.8 74 16-89 13-94 (95)
79 2dzj_A Synaptic glycoprotein S 99.4 4.1E-13 1.4E-17 117.0 6.8 72 16-87 8-85 (88)
80 2kj6_A Tubulin folding cofacto 99.4 1E-12 3.5E-17 116.9 9.5 76 16-91 12-96 (97)
81 3ai5_A Yeast enhanced green fl 99.4 8.7E-13 3E-17 138.6 10.1 78 14-91 229-306 (307)
82 1v6e_A Cytoskeleton-associated 99.4 1.3E-12 4.5E-17 114.2 9.0 77 16-92 5-89 (95)
83 1wf9_A NPL4 family protein; be 99.4 9.8E-13 3.4E-17 117.8 7.8 75 17-92 6-96 (107)
84 1t0y_A Tubulin folding cofacto 99.3 2.7E-12 9.2E-17 117.6 10.2 77 17-93 5-89 (122)
85 2io1_B Small ubiquitin-related 99.3 5.9E-12 2E-16 111.2 10.0 78 15-92 4-81 (94)
86 2xzm_9 RPS31E; ribosome, trans 99.2 7.5E-13 2.6E-17 130.8 0.0 69 19-92 1-69 (189)
87 2io0_B Small ubiquitin-related 99.2 7.1E-11 2.4E-15 104.0 10.6 76 17-92 4-79 (91)
88 1wm3_A Ubiquitin-like protein 99.2 6.3E-11 2.2E-15 99.1 9.6 71 19-89 2-72 (72)
89 3shq_A UBLCP1; phosphatase, hy 99.2 2E-11 6.8E-16 128.7 7.8 76 16-92 3-81 (320)
90 2kzr_A Ubiquitin thioesterase 99.2 1.5E-11 5.3E-16 105.5 5.8 73 19-92 1-79 (86)
91 2d07_B Ubiquitin-like protein 99.2 8.1E-11 2.8E-15 103.5 10.3 78 15-92 14-91 (93)
92 1wz0_A Ubiquitin-like protein 99.2 1.6E-10 5.3E-15 104.2 11.1 78 15-92 21-98 (104)
93 2k8h_A Small ubiquitin protein 99.2 9.9E-11 3.4E-15 106.6 9.9 79 14-92 22-100 (110)
94 3a4r_A Nfatc2-interacting prot 99.2 1.6E-10 5.5E-15 98.6 10.6 73 16-88 5-78 (79)
95 2eke_C Ubiquitin-like protein 99.1 3.1E-10 1.1E-14 102.8 11.3 78 14-92 27-104 (106)
96 1wjn_A Tubulin-folding protein 99.0 5E-10 1.7E-14 98.1 8.7 77 16-92 7-94 (97)
97 3kyd_D Small ubiquitin-related 98.8 2.2E-08 7.7E-13 92.1 10.5 76 16-91 38-113 (115)
98 3pge_A SUMO-modified prolifera 98.6 1.9E-07 6.6E-12 93.1 10.2 79 14-93 25-103 (200)
99 3tix_A Ubiquitin-like protein 98.5 1.5E-07 5.3E-12 93.6 7.8 78 14-92 53-130 (207)
100 2jxx_A Nfatc2-interacting prot 98.2 6.1E-06 2.1E-10 73.8 10.2 77 12-88 19-96 (97)
101 3v7o_A Minor nucleoprotein VP3 98.2 2E-07 6.7E-12 94.0 0.0 77 15-92 18-94 (227)
102 2pjh_A Protein NPL4, nuclear p 98.2 7.9E-07 2.7E-11 76.3 3.3 71 17-88 3-78 (80)
103 3goe_A DNA repair protein RAD6 98.1 1.2E-05 4.2E-10 69.9 9.5 73 17-89 8-81 (82)
104 3uf8_A Ubiquitin-like protein 97.9 2.5E-05 8.5E-10 77.7 9.2 78 15-93 18-95 (209)
105 2l76_A Nfatc2-interacting prot 97.9 8.6E-05 2.9E-09 66.5 11.2 77 14-91 17-93 (95)
106 4efo_A Serine/threonine-protei 97.8 0.00011 3.7E-09 65.6 9.5 70 20-89 14-87 (94)
107 3ix6_A TS, tsase, thymidylate 97.7 5.1E-06 1.7E-10 89.3 0.0 77 15-92 18-94 (360)
108 4da1_A Protein phosphatase 1K, 97.6 9.3E-06 3.2E-10 86.7 0.0 76 16-92 28-103 (389)
109 3plu_A Ubiquitin-like modifier 97.5 2E-06 6.7E-11 76.7 -5.4 45 99-143 21-68 (93)
110 4eew_A Large proline-rich prot 97.4 3.8E-06 1.3E-10 71.3 -5.2 60 79-143 2-64 (88)
111 2xzm_9 RPS31E; ribosome, trans 97.3 4.2E-05 1.4E-09 75.8 0.0 44 100-143 1-47 (189)
112 2al3_A TUG long isoform; TUG U 97.2 0.00058 2E-08 60.6 7.2 75 18-92 9-83 (90)
113 2kc2_A Talin-1, F1; FERM, adhe 97.2 0.00047 1.6E-08 64.6 6.2 70 20-89 13-121 (128)
114 1uh6_A Ubiquitin-like 5; beta- 97.1 1.4E-05 4.8E-10 71.9 -4.5 43 100-142 29-74 (100)
115 2bps_A YUKD protein; ubiquitin 97.1 0.0012 4E-08 57.5 7.4 70 18-87 4-80 (81)
116 2lxa_A Ubiquitin-like protein 97.1 2.2E-05 7.4E-10 68.5 -3.8 39 105-143 9-51 (87)
117 1wju_A NEDD8 ultimate buster-1 97.1 5.4E-05 1.8E-09 68.1 -1.4 38 106-143 28-66 (100)
118 3m63_B Ubiquitin domain-contai 96.9 4E-05 1.4E-09 67.9 -3.6 66 71-143 7-74 (101)
119 3b1l_X E3 ubiquitin-protein li 95.9 0.00016 5.5E-09 59.2 0.0 43 101-143 2-47 (76)
120 3phx_B Ubiquitin-like protein 96.8 2.9E-05 1E-09 64.4 -4.7 44 100-143 5-51 (79)
121 3qx1_A FAS-associated factor 1 96.8 0.006 2.1E-07 52.1 9.4 73 16-89 5-82 (84)
122 3dbh_I NEDD8; cell cycle, acti 96.7 6.3E-05 2.1E-09 63.2 -3.6 45 99-143 12-59 (88)
123 4dwf_A HLA-B-associated transc 96.7 4E-05 1.4E-09 65.2 -4.9 39 105-143 13-52 (90)
124 2kk8_A Uncharacterized protein 96.6 5E-05 1.7E-09 65.1 -5.0 39 105-143 18-57 (84)
125 2fnj_B Transcription elongatio 96.6 4.3E-05 1.5E-09 70.6 -5.8 38 106-143 9-48 (118)
126 3v6c_B Ubiquitin; structural g 96.6 8.6E-05 2.9E-09 63.6 -3.9 46 98-143 16-64 (91)
127 3u5e_m 60S ribosomal protein L 96.6 0.00037 1.3E-08 63.9 0.0 43 101-143 2-47 (128)
128 4fbj_B NEDD8; effector-HOST ta 96.5 8.3E-05 2.8E-09 63.7 -4.3 39 105-143 8-47 (88)
129 2dzm_A FAS-associated factor 1 96.5 9.6E-05 3.3E-09 66.2 -4.0 37 105-141 16-53 (100)
130 2dzk_A UBX domain-containing p 96.5 0.016 5.6E-07 52.2 10.5 78 15-92 10-92 (109)
131 3m62_B UV excision repair prot 96.5 0.00014 4.9E-09 64.7 -3.1 39 105-143 9-48 (106)
132 3u5c_f 40S ribosomal protein S 96.4 0.00054 1.9E-08 65.4 0.0 43 101-143 2-47 (152)
133 2daj_A KIAA0977 protein, COBL- 96.3 0.02 6.8E-07 50.7 9.2 75 15-92 7-84 (91)
134 1wyw_B Ubiquitin-like protein 96.3 0.00033 1.1E-08 61.2 -2.0 39 105-143 29-68 (97)
135 2faz_A Ubiquitin-like containi 96.3 0.00012 4.1E-09 60.4 -4.6 38 105-142 10-50 (78)
136 1wj4_A KIAA0794 protein; UBX d 96.2 0.029 9.9E-07 51.8 10.6 76 14-90 39-119 (124)
137 2uyz_B Small ubiquitin-related 96.2 0.00011 3.8E-09 60.9 -5.2 39 105-143 11-50 (79)
138 4ajy_B Transcription elongatio 96.2 0.00011 3.7E-09 68.1 -5.7 35 109-143 13-48 (118)
139 4a20_A Ubiquitin-like protein 96.2 0.00022 7.4E-09 63.5 -3.7 39 105-143 27-69 (98)
140 4hcn_B Polyubiquitin, ubiquiti 96.1 0.00022 7.4E-09 62.3 -4.1 45 99-143 22-69 (98)
141 2hj8_A Interferon-induced 17 k 96.0 0.00052 1.8E-08 58.6 -1.9 38 105-142 12-50 (88)
142 1sif_A Ubiquitin; hydrophobic 96.0 0.00023 7.8E-09 61.0 -4.3 45 99-143 9-56 (88)
143 1wh3_A 59 kDa 2'-5'-oligoadeny 96.0 0.00023 8E-09 59.8 -4.2 45 99-143 7-54 (87)
144 3k9o_B Ubiquitin, UBB+1; E2-25 96.0 0.00024 8.3E-09 60.9 -4.3 39 105-143 9-48 (96)
145 1v5t_A 8430435I17RIK protein; 95.9 0.00035 1.2E-08 60.2 -3.4 42 99-140 7-51 (90)
146 1ttn_A DC-UBP, dendritic cell- 95.9 0.00026 8.8E-09 62.8 -4.4 44 100-143 24-70 (106)
147 3mtn_B UBA80, ubcep1, ubiquiti 95.9 0.00047 1.6E-08 57.2 -2.6 39 105-143 11-50 (85)
148 2wyq_A HHR23A, UV excision rep 95.9 0.0003 1E-08 58.8 -4.1 39 105-143 13-55 (85)
149 2kan_A Uncharacterized protein 95.8 0.00031 1.1E-08 61.3 -4.3 35 109-143 26-61 (94)
150 1wy8_A NP95-like ring finger p 95.8 0.00036 1.2E-08 59.0 -3.8 43 100-142 8-55 (89)
151 3ivf_A Talin-1; FERM domain, c 95.8 0.013 4.6E-07 61.7 7.3 109 18-133 3-122 (371)
152 1wgh_A Ubiquitin-like 3, HCG-1 95.8 0.00049 1.7E-08 63.2 -3.2 39 105-143 24-71 (116)
153 4dbg_A Ranbp-type and C3HC4-ty 95.8 0.00024 8.3E-09 64.4 -5.2 36 107-142 36-72 (105)
154 1wgd_A Homocysteine-responsive 95.8 0.00053 1.8E-08 59.0 -2.9 39 105-143 15-58 (93)
155 3n3k_B Ubiquitin; hydrolase, p 95.8 0.0004 1.4E-08 57.7 -3.7 39 105-143 11-50 (85)
156 1uel_A HHR23B, UV excision rep 95.8 0.00038 1.3E-08 60.4 -4.0 39 105-143 8-50 (95)
157 2l7r_A Ubiquitin-like protein 95.7 0.00029 9.9E-09 61.1 -4.8 45 99-143 19-64 (93)
158 1ndd_A NEDD8, protein (ubiquit 95.7 0.00031 1.1E-08 56.9 -4.4 38 105-142 8-46 (76)
159 2kjr_A CG11242; UBL, ubiquitin 95.7 0.00075 2.6E-08 59.6 -2.3 37 107-143 27-64 (95)
160 2dzi_A Ubiquitin-like protein 95.7 0.00043 1.5E-08 57.0 -3.7 38 105-142 15-53 (81)
161 2kdb_A Homocysteine-responsive 95.5 0.00058 2E-08 60.8 -3.7 39 105-143 31-74 (99)
162 2cr5_A Reproduction 8; UBX dom 95.5 0.13 4.6E-06 46.1 11.7 75 16-91 21-99 (109)
163 1wgg_A Ubiquitin carboxyl-term 95.5 0.0004 1.4E-08 61.0 -4.8 38 106-143 15-54 (96)
164 3l0w_B Monoubiquitinated proli 95.4 0.00054 1.9E-08 66.0 -4.6 39 105-143 8-47 (169)
165 1v86_A DNA segment, CHR 7, way 95.4 0.0006 2.1E-08 59.5 -4.2 38 105-142 24-62 (95)
166 1se9_A Ubiquitin family; ubiqu 95.4 0.00073 2.5E-08 63.1 -3.9 39 105-143 24-71 (126)
167 2gow_A HCG-1 protein, ubiquiti 95.3 0.0021 7E-08 59.7 -1.2 39 105-143 25-72 (125)
168 1yx5_B Ubiquitin; proteasome, 95.2 0.00082 2.8E-08 58.2 -3.8 39 105-143 8-47 (98)
169 1we6_A Splicing factor, putati 95.2 0.00077 2.6E-08 60.1 -4.1 37 106-142 39-77 (111)
170 2kdi_A Ubiquitin, vacuolar pro 95.2 0.00084 2.9E-08 60.6 -4.0 43 100-142 10-55 (114)
171 1v5o_A 1700011N24RIK protein; 95.1 0.0013 4.3E-08 58.0 -2.8 38 106-143 20-58 (102)
172 3q3f_A Ribonuclease/ubiquitin 95.1 0.00079 2.7E-08 66.5 -4.6 44 100-143 106-152 (189)
173 3a9j_A Ubiquitin; protein comp 95.1 0.00068 2.3E-08 54.8 -4.4 38 105-142 8-46 (76)
174 2ojr_A Ubiquitin; lanthide-bin 95.1 0.00031 1.1E-08 62.8 -7.0 38 105-142 43-81 (111)
175 4b6w_A Tubulin-specific chaper 95.1 0.0014 4.7E-08 56.8 -2.8 37 106-142 13-50 (86)
176 3vdz_A Ubiquitin-40S ribosomal 95.1 0.00069 2.4E-08 60.7 -4.9 39 105-143 43-82 (111)
177 2kj6_A Tubulin folding cofacto 95.0 0.00096 3.3E-08 59.2 -3.9 37 107-143 26-63 (97)
178 1wx8_A Riken cDNA 4931431F19; 95.0 0.00085 2.9E-08 57.8 -4.3 37 107-143 26-63 (96)
179 1s3s_G P47 protein; AAA ATPase 94.9 0.069 2.3E-06 49.4 7.9 72 15-86 49-124 (127)
180 1v2y_A 3300001G02RIK protein; 94.4 0.00075 2.6E-08 61.0 -6.4 38 100-137 8-48 (105)
181 1we7_A SF3A1 protein; structur 94.4 0.0019 6.5E-08 58.0 -3.8 58 83-143 24-82 (115)
182 2klc_A Ubiquilin-1; ubiquitin- 94.3 0.0031 1E-07 55.6 -2.6 37 107-143 34-71 (101)
183 4e71_A Plexin-B2, MM1; transme 94.2 0.25 8.6E-06 45.4 9.8 75 16-90 9-110 (111)
184 1wxv_A BAG-family molecular ch 94.2 0.0022 7.5E-08 54.9 -3.6 37 106-142 15-57 (92)
185 2dzj_A Synaptic glycoprotein S 94.1 0.0024 8.1E-08 55.4 -3.5 38 105-142 18-60 (88)
186 1yqb_A Ubiquilin 3; structural 94.1 0.0015 5E-08 57.6 -5.0 37 106-143 31-68 (100)
187 2bwf_A Ubiquitin-like protein 94.1 0.0018 6.2E-08 52.8 -4.2 38 106-143 12-50 (77)
188 2kd0_A LRR repeats and ubiquit 94.0 0.0019 6.5E-08 55.1 -4.4 38 105-142 19-57 (85)
189 1wx7_A Ubiquilin 3; ubiquitin- 93.9 0.0043 1.5E-07 54.7 -2.5 37 106-143 26-63 (106)
190 2r2o_A Plexin-B1; effector dom 93.8 0.2 6.9E-06 47.6 8.6 79 14-92 20-130 (138)
191 1v6e_A Cytoskeleton-associated 93.7 0.0037 1.3E-07 54.3 -3.2 34 109-142 20-54 (95)
192 1j8c_A Ubiquitin-like protein 93.6 0.002 6.8E-08 59.3 -5.3 37 107-143 41-78 (125)
193 1wf9_A NPL4 family protein; be 93.0 0.0054 1.8E-07 54.6 -3.3 37 105-142 15-53 (107)
194 3jyu_A Ubiquitin carboxyl-term 92.8 0.5 1.7E-05 47.4 10.3 75 19-93 140-223 (231)
195 1x1m_A Ubiquitin-like protein 92.6 0.0073 2.5E-07 53.6 -3.0 36 108-143 26-74 (107)
196 3ai5_A Yeast enhanced green fl 92.6 0.0077 2.6E-07 63.6 -3.4 45 98-142 232-279 (307)
197 1wia_A Hypothetical ubiquitin- 92.4 0.006 2.1E-07 52.5 -3.7 36 105-143 15-51 (95)
198 4a3p_A Ubiquitin carboxyl-term 92.4 0.38 1.3E-05 47.9 8.7 74 19-92 128-210 (217)
199 2kzr_A Ubiquitin thioesterase 92.4 0.0047 1.6E-07 52.6 -4.4 37 105-142 8-46 (86)
200 1t0y_A Tubulin folding cofacto 92.1 0.0066 2.3E-07 55.4 -4.1 35 109-143 19-54 (122)
201 1oqy_A HHR23A, UV excision rep 91.5 0.01 3.6E-07 63.9 -4.0 44 100-143 8-57 (368)
202 4efo_A Serine/threonine-protei 91.3 0.0082 2.8E-07 53.6 -4.3 39 105-143 21-60 (94)
203 1vjk_A Molybdopterin convertin 90.1 1.8 6E-05 37.7 9.6 68 16-88 7-92 (98)
204 3h6n_A Plexin-D1; structural g 89.9 1.4 5E-05 41.3 9.3 74 18-91 4-105 (127)
205 1ryj_A Unknown; beta/alpha pro 89.6 2.1 7.2E-05 35.2 9.1 62 18-89 4-65 (70)
206 4e74_A Plexin-A4; RBD, structu 88.9 1.3 4.3E-05 41.1 8.0 76 16-91 11-115 (117)
207 1oey_A P67-PHOX, neutrophil cy 88.6 0.95 3.2E-05 39.6 6.6 49 16-66 3-51 (83)
208 3shq_A UBLCP1; phosphatase, hy 88.5 0.025 8.7E-07 59.7 -4.0 35 106-140 13-48 (320)
209 2l32_A Small archaeal modifier 88.2 0.94 3.2E-05 38.2 6.2 60 19-88 1-60 (74)
210 3kuz_A Plexin-C1; structural g 87.2 3.7 0.00013 38.5 10.1 74 16-89 17-125 (126)
211 1vd2_A Protein kinase C, IOTA 87.2 2.5 8.6E-05 37.3 8.5 51 15-66 3-54 (89)
212 3hm6_X Plexin-B1; structural g 84.8 4.2 0.00014 46.8 10.9 79 14-92 253-363 (644)
213 3rpf_C Molybdopterin convertin 82.6 2.5 8.7E-05 34.8 6.1 65 19-88 1-68 (74)
214 2io1_B Small ubiquitin-related 82.0 0.12 4.2E-06 45.3 -2.2 42 105-146 15-57 (94)
215 3po0_A Small archaeal modifier 81.5 6.4 0.00022 33.2 8.4 55 29-88 18-83 (89)
216 2daf_A FLJ35834 protein; hypot 80.4 0.082 2.8E-06 49.0 -4.1 38 106-143 25-63 (118)
217 1ef1_A Moesin; membrane, FERM 78.9 7.6 0.00026 39.2 9.4 74 18-92 1-80 (294)
218 1h4r_A Merlin; FERM, neurofibr 77.6 7.1 0.00024 39.9 8.8 75 16-91 20-99 (314)
219 2juo_A GA-binding protein alph 77.5 5.2 0.00018 35.4 6.5 61 31-91 5-65 (89)
220 3ig3_A Plxna3 protein; plexin 76.6 12 0.00042 43.0 11.0 79 14-92 229-336 (627)
221 1wgk_A Riken cDNA 2900073H19 p 76.5 3 0.0001 37.9 5.0 71 17-89 10-103 (114)
222 2kmc_A Fermitin family homolog 75.8 12 0.00042 33.9 8.6 73 18-90 19-99 (102)
223 3dwg_C 9.5 kDa culture filtrat 75.4 7.6 0.00026 33.0 7.1 69 19-89 1-88 (93)
224 1wgr_A Growth factor receptor- 75.2 9 0.00031 34.4 7.7 77 15-91 6-93 (100)
225 3ivf_A Talin-1; FERM domain, c 75.0 11 0.00038 39.5 9.7 74 17-90 84-167 (371)
226 3qij_A Protein 4.1; cytoskelet 74.2 7.1 0.00024 40.0 7.8 78 13-90 12-95 (296)
227 1tyg_B YJBS; alpha beta barrel 73.0 4.9 0.00017 35.0 5.3 64 16-89 18-82 (87)
228 2qjl_A URM1, ubiquitin-related 72.5 19 0.00064 31.2 9.0 71 18-88 1-93 (99)
229 2i1j_A Moesin; FERM, coiled-co 72.4 10 0.00036 42.9 9.2 75 17-92 3-83 (575)
230 2io0_B Small ubiquitin-related 72.1 0.39 1.3E-05 42.0 -1.9 42 105-146 13-55 (91)
231 1wjn_A Tubulin-folding protein 71.4 0.64 2.2E-05 40.2 -0.7 37 106-142 21-58 (97)
232 1wm3_A Ubiquitin-like protein 70.7 0.12 4.1E-06 42.8 -5.2 41 105-145 9-50 (72)
233 2ylm_A Ubiquitin carboxyl-term 70.1 7.6 0.00026 43.5 7.4 128 18-145 339-490 (530)
234 3a4r_A Nfatc2-interacting prot 70.0 0.17 5.7E-06 42.9 -4.6 41 105-145 15-57 (79)
235 2kvr_A Ubiquitin carboxyl-term 69.2 3.6 0.00012 38.2 3.8 33 31-63 58-90 (130)
236 1fm0_D Molybdopterin convertin 67.4 12 0.00041 30.7 6.3 54 29-88 17-75 (81)
237 2k8h_A Small ubiquitin protein 65.4 0.52 1.8E-05 42.8 -2.6 41 105-145 34-75 (110)
238 2l52_A Methanosarcina acetivor 65.1 19 0.00064 31.4 7.4 67 18-88 3-93 (99)
239 1wz0_A Ubiquitin-like protein 65.0 0.32 1.1E-05 43.6 -4.0 42 105-146 32-74 (104)
240 1ip9_A BEM1 protein; ubiquitin 64.5 15 0.00051 32.4 6.5 43 17-62 11-53 (85)
241 2d07_B Ubiquitin-like protein 63.8 0.68 2.3E-05 40.4 -2.1 42 105-146 25-67 (93)
242 1wgy_A RAP guanine nucleotide 63.1 25 0.00087 31.9 8.0 73 18-90 9-86 (104)
243 4eut_A Serine/threonine-protei 61.5 22 0.00075 36.8 8.4 53 27-79 320-374 (396)
244 1q1o_A Cell division control p 58.9 12 0.00041 33.7 5.0 49 17-65 4-64 (98)
245 2eke_C Ubiquitin-like protein 58.6 0.41 1.4E-05 43.2 -4.5 41 106-146 39-80 (106)
246 2k9x_A Tburm1, uncharacterized 58.2 2.8 9.4E-05 38.0 0.8 70 18-89 4-97 (110)
247 1f0z_A THis protein; ubiquitin 56.2 13 0.00044 29.9 4.4 56 27-89 6-61 (66)
248 2ylm_A Ubiquitin carboxyl-term 54.6 17 0.00057 40.8 6.4 78 14-91 126-218 (530)
249 2kmm_A Guanosine-3',5'-BIS(dip 54.0 19 0.00066 28.8 5.1 63 19-90 1-63 (73)
250 2q5w_D Molybdopterin convertin 51.0 20 0.00068 29.1 4.8 54 29-88 16-71 (77)
251 1f2r_I Inhibitor of caspase-ac 50.5 88 0.003 28.2 9.2 85 1-90 1-89 (100)
252 2cu3_A Unknown function protei 50.0 27 0.00091 27.9 5.3 56 26-89 4-59 (64)
253 3qa8_A MGC80376 protein; kinas 49.8 12 0.00042 43.2 4.5 51 27-77 320-371 (676)
254 1y8x_B Ubiquitin-activating en 46.5 26 0.0009 31.2 5.2 59 30-88 6-82 (98)
255 3v7o_A Minor nucleoprotein VP3 45.3 4.4 0.00015 41.2 0.0 49 98-146 20-70 (227)
256 2dhz_A RAP guanine nucleotide 40.4 70 0.0024 29.7 7.1 74 17-90 8-92 (120)
257 2hj1_A Hypothetical protein; s 37.9 54 0.0018 29.1 5.8 68 17-89 11-84 (97)
258 3onh_A Ubiquitin-activating en 36.8 57 0.002 30.6 6.0 53 37-90 18-79 (127)
259 2k5p_A THis protein, thiamine- 36.6 29 0.00098 29.4 3.7 58 27-89 6-64 (78)
260 2lgx_A Fermitin family homolog 36.6 9.7 0.00033 35.0 0.8 70 19-89 27-101 (112)
261 2g1e_A Hypothetical protein TA 36.0 84 0.0029 26.0 6.5 55 33-88 19-84 (90)
262 2inc_C TOUB protein; DIIRON, 4 35.7 1.3E+02 0.0044 26.5 7.6 60 31-90 15-82 (83)
263 2kl0_A Putative thiamin biosyn 33.4 45 0.0015 27.8 4.3 55 27-89 6-60 (73)
264 3ge3_C Toluene-4-monooxygenase 33.3 1.2E+02 0.004 26.7 7.0 71 19-89 4-82 (84)
265 2c7h_A RBBP6, retinoblastoma-b 32.4 1.1E+02 0.0036 27.0 6.6 45 17-61 5-51 (86)
266 3au4_A Myosin-X; protein-prote 30.8 62 0.0021 35.8 6.2 47 17-63 215-263 (555)
267 2eel_A Cell death activator CI 26.5 1.2E+02 0.004 27.0 5.9 66 20-91 11-79 (91)
268 3pge_A SUMO-modified prolifera 26.5 3.4 0.00012 41.3 -4.4 44 105-148 36-80 (200)
269 2v1y_A Phosphatidylinositol-4, 26.3 1E+02 0.0036 28.0 5.7 37 15-51 16-52 (108)
270 1rws_A Hypothetical protein PF 25.8 16 0.00054 30.4 0.3 47 33-88 25-71 (77)
271 3pvl_A Myosin VIIA isoform 1; 25.2 83 0.0028 36.2 6.1 39 17-55 262-300 (655)
272 3w1s_C Ubiquitin-like protein 24.9 2.6E+02 0.009 24.5 7.9 74 15-90 5-85 (91)
273 4gmv_A RAS-associated and plec 23.0 1.3E+02 0.0046 31.2 6.6 72 17-88 30-112 (281)
274 1wmh_B Partitioning defective- 22.9 2.6E+02 0.0089 24.5 7.4 48 17-65 5-54 (86)
275 1pqs_A Cell division control p 22.5 55 0.0019 28.0 3.0 36 30-65 3-43 (77)
276 3tca_A Amyloid beta A4 precurs 22.3 1.5E+02 0.0053 29.0 6.7 42 17-58 33-74 (291)
277 3r8s_T 50S ribosomal protein L 20.9 1.6E+02 0.0056 25.9 5.8 40 28-67 27-67 (93)
278 3hk0_A Growth factor receptor- 20.7 1.1E+02 0.0038 31.2 5.4 59 19-77 9-74 (256)
279 3u52_E Phenol hydroxylase comp 20.2 2.3E+02 0.008 26.3 6.8 72 17-88 22-107 (119)
No 1
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.88 E-value=1.5e-23 Score=199.74 Aligned_cols=126 Identities=30% Similarity=0.452 Sum_probs=115.2
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 13 e~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
.....+|+|+||+++|+++.|+|++++||.+||++|++++|+|+++|||+|+|+.|+|+.+|++|+|+++++|||+++..
T Consensus 15 ~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~ 94 (172)
T 3u30_A 15 VPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 94 (172)
T ss_dssp ----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred CCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeeccc
Confidence 34557799999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCC--CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 93 VPSSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 93 ~s~sss~~qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
.++.+++ .+|+++.+.|+++++|.+||.+|+ ++|||+++|||+|+.
T Consensus 95 -----gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g 143 (172)
T 3u30_A 95 -----GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 143 (172)
T ss_dssp -----CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETT
T ss_pred -----ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECC
Confidence 4566666 789999999999999999999999 999999999998863
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.87 E-value=3.7e-23 Score=193.95 Aligned_cols=122 Identities=22% Similarity=0.284 Sum_probs=113.2
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-e-CCeecCCccccccccccCCcEEEEEEecCCCC
Q 004840 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-C-RGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (728)
Q Consensus 18 sMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI-F-~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~s~ 95 (728)
.|+|+||+++|++++++|++++||.+||++|++++|+|+++|||+ | +|+.|+|+.+|++|+|++|++|||+++..
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~--- 78 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKS--- 78 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCC---
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCC---
Confidence 389999999999999999999999999999999999999999999 9 79999999999999999999999999842
Q ss_pred CCCCCCCCC--CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 96 SSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 96 sss~~qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
+..|++++ .+|+++.++|++++||++||.+|+ ++|+|+++|||+|+.
T Consensus 79 -~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G 128 (159)
T 3rt3_B 79 -DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEG 128 (159)
T ss_dssp -CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred -CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECC
Confidence 14577777 789999999999999999999999 999999999998864
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.83 E-value=1.2e-21 Score=179.96 Aligned_cols=119 Identities=32% Similarity=0.491 Sum_probs=111.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecCCCCCCC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSSSD 98 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~s~sss 98 (728)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|||+.+.+ .
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~-----~ 75 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR-----G 75 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCT-----T
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecc-----c
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999865 3
Q ss_pred CCCCCC--CCCCccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 99 GTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 99 ~~qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
++.+++ ..|+++.++|+++++|.+||.+|+ +.|+|++.|||+|.
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~ 122 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 122 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEEC
Confidence 466666 788999999999999999999999 99999999999875
No 4
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.73 E-value=1.2e-17 Score=143.13 Aligned_cols=80 Identities=44% Similarity=0.666 Sum_probs=74.3
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecCCCC
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~s~ 95 (728)
+.+|+|+||+++|+++.|+|++++||.+||++|++++++++++|||+|+||.|+|+++|.+|+| +|++|||+++.+...
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQT 81 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC--
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999 899999999987554
Q ss_pred C
Q 004840 96 S 96 (728)
Q Consensus 96 s 96 (728)
.
T Consensus 82 ~ 82 (90)
T 4dwf_A 82 H 82 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 5
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=138.87 Aligned_cols=76 Identities=25% Similarity=0.335 Sum_probs=73.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
..|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|..
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999864
No 6
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.5e-17 Score=145.90 Aligned_cols=81 Identities=35% Similarity=0.509 Sum_probs=73.3
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEec
Q 004840 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 12 ae~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~ 91 (728)
....+..|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|.
T Consensus 16 ~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl 95 (98)
T 4hcn_B 16 LYFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 95 (98)
T ss_dssp ------CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBC
T ss_pred CCCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 34455789999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 004840 92 P 92 (728)
Q Consensus 92 p 92 (728)
.
T Consensus 96 ~ 96 (98)
T 4hcn_B 96 R 96 (98)
T ss_dssp S
T ss_pred C
Confidence 5
No 7
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.71 E-value=2.7e-17 Score=141.84 Aligned_cols=79 Identities=33% Similarity=0.514 Sum_probs=75.2
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEec
Q 004840 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 13 e~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~ 91 (728)
......|+|+||+++|+++.++|++++||.+||++|++++|+++++|||+|+||.|+|+.+|++|+|++|++|||++|.
T Consensus 12 ~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 12 LVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp CCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 3446789999999999999999999999999999999999999999999999999999999999999999999999986
No 8
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.70 E-value=3.1e-17 Score=145.87 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=71.4
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 14 ~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
..+.+|+|+||++.|+++.++|++++||.+||++|++++|+|+++|||+|+||+|+|+.+|++|+|++|++|||..
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 4557899999999999999999999999999999999999999999999999999999999999999999999974
No 9
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=4.4e-17 Score=146.41 Aligned_cols=79 Identities=24% Similarity=0.312 Sum_probs=75.4
Q ss_pred CCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 11 GAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 11 ~ae~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
.++....+|+|+||++.|++++|+|++++||.+||++|++++|+|+++|||+|.||+|+|+.+|++|+|+++++|||+.
T Consensus 21 ~~~~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 21 GSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CCSSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred cCCCCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 3677778899999999999999999999999999999999999999999999999999999999999999999999974
No 10
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.70 E-value=4.4e-17 Score=138.01 Aligned_cols=79 Identities=30% Similarity=0.521 Sum_probs=75.3
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 14 ~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
.++..|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|.+|+|+++++|||+++..
T Consensus 8 ~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~ 86 (88)
T 3dbh_I 8 GSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLR 86 (88)
T ss_dssp SCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCC
T ss_pred CCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 4456799999999999999999999999999999999999999999999999999999999999999999999999865
No 11
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.1e-17 Score=149.77 Aligned_cols=102 Identities=29% Similarity=0.367 Sum_probs=92.8
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecCCCC
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~s~ 95 (728)
...++|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++...
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~G-- 84 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRG-- 84 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCS--
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCC--
Confidence 356899999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred CCCCCCCCC-----CCCCccccccccccchhc
Q 004840 96 SSDGTHNLP-----GTSRSHGSHVAPSVVIET 122 (728)
Q Consensus 96 sss~~qIfV-----ltGkTitl~V~pSdTVes 122 (728)
++.+++ .+|++++++|+++++|+.
T Consensus 85 ---G~~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 85 ---GSMGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp ---SCCCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred ---CceeeccccccccCceEEEEeccccccCC
Confidence 345555 358899999999999875
No 12
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=5.4e-17 Score=141.01 Aligned_cols=90 Identities=29% Similarity=0.426 Sum_probs=79.7
Q ss_pred CCCCCCCCCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCc
Q 004840 4 RGTVKIPGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGH 83 (728)
Q Consensus 4 sSs~~i~~ae~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGs 83 (728)
+++.........+.+|+|+||+. ++++.++|++++||.+||++|++++++++++|||+|+||.|+|+++|.+|+|++|+
T Consensus 3 ~~~~~~~~~~~~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~ 81 (96)
T 1wx8_A 3 SGSSGVSGREPSSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGS 81 (96)
T ss_dssp CCCCCCCCSCCCSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTE
T ss_pred CCCccccCCCCCCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCC
Confidence 33333333444667899999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCC
Q 004840 84 TLHMVVRQPVP 94 (728)
Q Consensus 84 TLhLVlR~p~s 94 (728)
+|||+++....
T Consensus 82 ~i~l~~~~~~g 92 (96)
T 1wx8_A 82 TVHVVVRSHSG 92 (96)
T ss_dssp EEECCBCCSSC
T ss_pred EEEEEEeCCCC
Confidence 99999987643
No 13
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.69 E-value=8.7e-17 Score=135.64 Aligned_cols=79 Identities=28% Similarity=0.482 Sum_probs=71.9
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHH---hCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASV---TGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeek---tGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
+.+|+|+||+++|+.+.++|++++||.+||++|+++ +++++++|||+|+|+.|+|+++|++|+|++|++|||+++.+
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 357999999999999999999999999999999998 89999999999999999999999999999999999999876
Q ss_pred CC
Q 004840 93 VP 94 (728)
Q Consensus 93 ~s 94 (728)
+.
T Consensus 83 ~~ 84 (85)
T 2wyq_A 83 KA 84 (85)
T ss_dssp --
T ss_pred CC
Confidence 43
No 14
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.69 E-value=8e-17 Score=137.42 Aligned_cols=75 Identities=45% Similarity=0.681 Sum_probs=71.5
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEe
Q 004840 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (728)
Q Consensus 15 s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR 90 (728)
.+..|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+.+|++|+| +|++|||++|
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 34679999999999999999999999999999999999999999999999999999999999999 8999999986
No 15
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=133.41 Aligned_cols=78 Identities=28% Similarity=0.469 Sum_probs=74.0
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 15 s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
++..|+|+||..+|+.+.++|++++||.+||++|++++++++++|||+|+||.|+|+.+|++|+|++|++|||+++++
T Consensus 4 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp SSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 446799999999999999999999999999999999999999999999999999999999999999999999998753
No 16
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1e-16 Score=133.42 Aligned_cols=75 Identities=29% Similarity=0.471 Sum_probs=71.9
Q ss_pred cEEEEEEeCCCcEE-EEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 18 TIEIKIKTLDSQTY-TLR-VDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 18 sMqItVKtLdGKt~-tLe-VdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
.|+|+||+++|+++ .++ |++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++|||++|++
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 59999999999985 999 9999999999999999999999999999999999999999999999999999999864
No 17
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=4.2e-17 Score=145.76 Aligned_cols=78 Identities=22% Similarity=0.367 Sum_probs=71.1
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecCCCC
Q 004840 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (728)
Q Consensus 18 sMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~s~ 95 (728)
+|+|+||+++|+++.|+|++++||.+||++|++++|+++++|||+|+||.|+|+++|++|+|++|++|+|+++++...
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC----
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCC
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999977644
No 18
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=3.2e-16 Score=139.29 Aligned_cols=86 Identities=28% Similarity=0.415 Sum_probs=77.1
Q ss_pred CCCCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEE
Q 004840 9 IPGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 9 i~~ae~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLV 88 (728)
.+.....+.+|+|+||+.+++ +.|+|++++||.+||++|++++++++++|||+|+||.|+|+++|.+|+|++|++|||+
T Consensus 8 ~~~~~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~ 86 (106)
T 1wx7_A 8 SPAPVQDPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLV 86 (106)
T ss_dssp CCSCCCCSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEE
T ss_pred CCCCCCCCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEE
Confidence 333334567899999999886 7999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 004840 89 VRQPVPS 95 (728)
Q Consensus 89 lR~p~s~ 95 (728)
+++....
T Consensus 87 ~~~~~~~ 93 (106)
T 1wx7_A 87 IKRQHRA 93 (106)
T ss_dssp ECCCCCS
T ss_pred EcCCCCC
Confidence 9876543
No 19
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.68 E-value=9.8e-17 Score=138.23 Aligned_cols=75 Identities=29% Similarity=0.501 Sum_probs=72.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecCC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~ 93 (728)
|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+|+.|+|+.+|++|+|++|++|+|+++...
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~G 75 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC-
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999764
No 20
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=2.1e-16 Score=134.07 Aligned_cols=78 Identities=27% Similarity=0.407 Sum_probs=74.8
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 15 s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
.+.+|+|+||+++++++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||+++..
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKG 81 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEecc
Confidence 346799999999999999999999999999999999999999999999999999999999999999999999999875
No 21
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=3.2e-16 Score=133.69 Aligned_cols=79 Identities=28% Similarity=0.445 Sum_probs=74.3
Q ss_pred CCcEEEEEEeCCC-cEEEE-EecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecCC
Q 004840 16 ETTIEIKIKTLDS-QTYTL-RVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (728)
Q Consensus 16 ~ssMqItVKtLdG-Kt~tL-eVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~ 93 (728)
..+|+|+||+++| +++.+ +|++++||.+||++|++++++|+++|||+|+||.|+|+++|.+|+|+++++|||+++...
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 4679999999999 79999 599999999999999999999999999999999999999999999999999999998764
Q ss_pred C
Q 004840 94 P 94 (728)
Q Consensus 94 s 94 (728)
.
T Consensus 85 G 85 (89)
T 1wy8_A 85 G 85 (89)
T ss_dssp S
T ss_pred C
Confidence 3
No 22
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.2e-16 Score=134.31 Aligned_cols=76 Identities=30% Similarity=0.490 Sum_probs=72.6
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
.+|+|+||+++++++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|..
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~ 77 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLR 77 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEecc
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999976
No 23
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.2e-16 Score=142.34 Aligned_cols=81 Identities=20% Similarity=0.324 Sum_probs=75.7
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecCC
Q 004840 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (728)
Q Consensus 14 ~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~ 93 (728)
.....|+|+||+++|+++.++|++++||.+||++|++++|+++++|||+|+||.|+|+++|++|+|++|++|||+++.+.
T Consensus 19 ~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~ 98 (106)
T 1ttn_A 19 NSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPV 98 (106)
T ss_dssp --CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred CCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred C
Q 004840 94 P 94 (728)
Q Consensus 94 s 94 (728)
.
T Consensus 99 ~ 99 (106)
T 1ttn_A 99 Q 99 (106)
T ss_dssp C
T ss_pred C
Confidence 4
No 24
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.8e-16 Score=132.88 Aligned_cols=76 Identities=34% Similarity=0.529 Sum_probs=73.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
.+|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||+++..
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~ 77 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLR 77 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECc
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999875
No 25
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.67 E-value=1.5e-16 Score=136.87 Aligned_cols=75 Identities=19% Similarity=0.362 Sum_probs=72.4
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCee-cCCccccccccccCCcEEEEEEe
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKV-LKDDQLLSAYHVEDGHTLHMVVR 90 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKv-LkDd~TLsdYGIkdGsTLhLVlR 90 (728)
...|+|+||+++|++++++|++++||.+||++|++++|+|+++|||+|+||. |+|+++|++|+|++|++|+|+++
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 3569999999999999999999999999999999999999999999999999 99999999999999999999986
No 26
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.67 E-value=2.2e-16 Score=129.21 Aligned_cols=74 Identities=30% Similarity=0.523 Sum_probs=71.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+.+|++|+|++|++|||+++..
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999864
No 27
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=4.1e-16 Score=136.09 Aligned_cols=78 Identities=33% Similarity=0.562 Sum_probs=73.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHH---hCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecCCCC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASV---TGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeek---tGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~s~ 95 (728)
|+|+||+++|+.+.++|++++||.+||++|+++ +|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++++...
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~~ 80 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAV 80 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCCC
Confidence 799999999999999999999999999999999 78999999999999999999999999999999999999876544
Q ss_pred C
Q 004840 96 S 96 (728)
Q Consensus 96 s 96 (728)
+
T Consensus 81 ~ 81 (95)
T 1uel_A 81 S 81 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 28
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.66 E-value=2.4e-16 Score=131.71 Aligned_cols=76 Identities=20% Similarity=0.304 Sum_probs=73.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
..|+|+||+++|+++.++|++++||.+||++|+++.|+|+++|||+|+|+.|+|+++|++|+|++|++|||+++..
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~ 77 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 77 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEecc
Confidence 3699999999999999999999999999999999999999999999999999999999999999999999999864
No 29
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.65 E-value=2.1e-16 Score=140.87 Aligned_cols=78 Identities=15% Similarity=0.394 Sum_probs=71.6
Q ss_pred CCCcEEEEEEeCCCcEEEE--EecCCCCHHHHHHHH-HHHhCCCCCCeEEEeCCeecCCccccccccc-cCCcEEEEEEe
Q 004840 15 SETTIEIKIKTLDSQTYTL--RVDKQVPVPALKEQI-ASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMVVR 90 (728)
Q Consensus 15 s~ssMqItVKtLdGKt~tL--eVdpsdTV~dLKekI-eektGIPpeqQRLIF~GKvLkDd~TLsdYGI-kdGsTLhLVlR 90 (728)
....|+|+||+++|++|++ +|++++||.+||++| +++.|+|+++|||+|+||.|+|+.+|++|+| ++|++|+|+++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 4567999999999998877 556999999999999 8889999999999999999999999999999 99999999998
Q ss_pred cC
Q 004840 91 QP 92 (728)
Q Consensus 91 ~p 92 (728)
+|
T Consensus 96 kp 97 (98)
T 4a20_A 96 PN 97 (98)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 30
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=135.54 Aligned_cols=76 Identities=25% Similarity=0.335 Sum_probs=72.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
.+|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++..
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~ 78 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC--
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999865
No 31
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.65 E-value=3.8e-16 Score=134.97 Aligned_cols=74 Identities=38% Similarity=0.587 Sum_probs=72.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
|+|+||+++|+++.|+|++++||.+||++|++++++++++|||+|+|+.|+|+.+|.+|+|++|++|||+++..
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~ 75 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 75 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999875
No 32
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.65 E-value=4.7e-16 Score=127.25 Aligned_cols=74 Identities=38% Similarity=0.583 Sum_probs=71.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+.+|++|+|++|++|||+++..
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLR 74 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999865
No 33
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.65 E-value=3.1e-16 Score=137.68 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=74.4
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 14 ~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
.....|+|+||+++|+++.|+|.+++||.+||++|+++.|+|+++|||+|+|+.|+|+++|++|+|+++++|||++++.
T Consensus 17 ~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~ 95 (97)
T 1wyw_B 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 95 (97)
T ss_dssp --CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSS
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecC
Confidence 4456799999999999999999999999999999999999999999999999999999999999999999999999864
No 34
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=4.6e-16 Score=134.85 Aligned_cols=79 Identities=29% Similarity=0.384 Sum_probs=72.7
Q ss_pred CCcEEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHh--CCCCCCeEEEeCCeecCCccccccc--cccCCcEEEEEE
Q 004840 16 ETTIEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASVT--GVLSEQQRLICRGKVLKDDQLLSAY--HVEDGHTLHMVV 89 (728)
Q Consensus 16 ~ssMqItVKtLdGK--t~tLeVdpsdTV~dLKekIeekt--GIPpeqQRLIF~GKvLkDd~TLsdY--GIkdGsTLhLVl 89 (728)
...|+|+||+.+++ ++.|+|++++||.+||++|++++ ++++++|||+|+||.|+|+++|++| +|+++++|||++
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 35699999999988 67777889999999999999998 9999999999999999999999999 999999999999
Q ss_pred ecCCC
Q 004840 90 RQPVP 94 (728)
Q Consensus 90 R~p~s 94 (728)
+....
T Consensus 85 ~~~gg 89 (93)
T 1wgd_A 85 NVKSG 89 (93)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 35
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.5e-16 Score=138.81 Aligned_cols=75 Identities=17% Similarity=0.408 Sum_probs=70.6
Q ss_pred cEEEEEEeCCCcEEEEEec--CCCCHHHHHHHH-HHHhCCCCCCeEEEeCCeecCCccccccccc-cCCcEEEEEEecC
Q 004840 18 TIEIKIKTLDSQTYTLRVD--KQVPVPALKEQI-ASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMVVRQP 92 (728)
Q Consensus 18 sMqItVKtLdGKt~tLeVd--psdTV~dLKekI-eektGIPpeqQRLIF~GKvLkDd~TLsdYGI-kdGsTLhLVlR~p 92 (728)
+|+|+||+++|++++|+|+ +++||.+||++| +++.|+|+++|||+|+||+|+|+.+|++|+| ++|++|+|++++.
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 5899999999999998766 999999999999 9999999999999999999999999999999 7999999999753
No 36
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.63 E-value=1.1e-15 Score=126.27 Aligned_cols=73 Identities=38% Similarity=0.690 Sum_probs=70.1
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEec
Q 004840 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 18 sMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~ 91 (728)
.|+|+||+ +|+.+.++|++++||.+||++|++++|+|+++|||+|+||.|+|+.+|++|+|++|++|||+.+.
T Consensus 4 ~m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 4 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 48999999 89999999999999999999999999999999999999999999999999999999999998764
No 37
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=1.1e-15 Score=132.85 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=73.8
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCc-cccccccccCCcEEEEEEecC
Q 004840 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 14 ~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd-~TLsdYGIkdGsTLhLVlR~p 92 (728)
+.+..|+|+||+++|+.+.++|++++||.+||++|++++ +++|||+|+||.|+|+ ++|.+|+|++|++|||+++.+
T Consensus 3 ~~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 3 SGSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp CCCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence 445679999999999999999999999999999999987 8999999999999999 999999999999999999987
Q ss_pred CCCC
Q 004840 93 VPSS 96 (728)
Q Consensus 93 ~s~s 96 (728)
....
T Consensus 80 ~~~~ 83 (95)
T 1wia_A 80 GAAV 83 (95)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 38
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=1.3e-15 Score=134.98 Aligned_cols=81 Identities=30% Similarity=0.429 Sum_probs=75.0
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecCC
Q 004840 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (728)
Q Consensus 14 ~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~ 93 (728)
..+.+|+|+||+.+++ +.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+.
T Consensus 18 ~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 18 GSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp CCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred CCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence 4457899999999886 799999999999999999999999999999999999999999999999999999999999765
Q ss_pred CC
Q 004840 94 PS 95 (728)
Q Consensus 94 s~ 95 (728)
.+
T Consensus 97 ~p 98 (100)
T 1yqb_A 97 RA 98 (100)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 39
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.62 E-value=1.4e-15 Score=133.39 Aligned_cols=77 Identities=22% Similarity=0.339 Sum_probs=72.8
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCc-cccccccccCCcEEEEEEecCC
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQPV 93 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd-~TLsdYGIkdGsTLhLVlR~p~ 93 (728)
...|+|+||++++ ++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+ ++|++|+|++|++|+|+++.+.
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~g 90 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSIN 90 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCS
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCC
Confidence 3569999999877 899999999999999999999999999999999999999999 9999999999999999998763
No 40
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.62 E-value=1.7e-15 Score=134.20 Aligned_cols=78 Identities=28% Similarity=0.418 Sum_probs=73.6
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecCC
Q 004840 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (728)
Q Consensus 15 s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~ 93 (728)
....|+|+||.. |+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+.
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 346799999998 899999999999999999999999999999999999999999999999999999999999998764
No 41
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=2.8e-15 Score=137.64 Aligned_cols=85 Identities=16% Similarity=0.314 Sum_probs=75.2
Q ss_pred CCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH------HhCC--CCCCeEEEeCCeecCCccccccccccCC
Q 004840 11 GAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS------VTGV--LSEQQRLICRGKVLKDDQLLSAYHVEDG 82 (728)
Q Consensus 11 ~ae~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIee------ktGI--PpeqQRLIF~GKvLkDd~TLsdYGIkdG 82 (728)
....+...|+|+||+++|++++|+|++++||.+||++|++ ++++ ++++|||||.||+|+|+++|++|+|+.+
T Consensus 9 ~~~~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~ 88 (116)
T 1wgh_A 9 SSHVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFG 88 (116)
T ss_dssp CCCCCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSS
T ss_pred cCCCCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCC
Confidence 3456667899999999999999999999999999999999 6675 6999999999999999999999999766
Q ss_pred --cEEEEEEecCCCC
Q 004840 83 --HTLHMVVRQPVPS 95 (728)
Q Consensus 83 --sTLhLVlR~p~s~ 95 (728)
.+|||++|.....
T Consensus 89 ~~~tlhLvlr~~~~~ 103 (116)
T 1wgh_A 89 KTTVMHLVARETLPE 103 (116)
T ss_dssp CEEEEEEEECSSCSS
T ss_pred CceEEEEEccCCCCC
Confidence 6899999876443
No 42
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.61 E-value=1.6e-15 Score=132.42 Aligned_cols=74 Identities=38% Similarity=0.587 Sum_probs=72.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
|+|+||+.+|+++.++|++++||.+||++|++++++++++|||+|+||.|+|+.+|++|+|++|++|+|+++..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~ 74 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999875
No 43
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=1.1e-15 Score=131.56 Aligned_cols=75 Identities=36% Similarity=0.592 Sum_probs=70.2
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 18 sMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
-|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+.+|++|+|++|++|+|+++..
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~ 83 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 83 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC---
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999865
No 44
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.61 E-value=8.4e-16 Score=134.04 Aligned_cols=75 Identities=25% Similarity=0.360 Sum_probs=69.9
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
...|+|+||+ |+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|+|++|..
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~ 91 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRML 91 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCC
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 3569999998 89999999999999999999999999999999999999999999999999999999999999865
No 45
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.60 E-value=2.2e-15 Score=135.62 Aligned_cols=76 Identities=37% Similarity=0.568 Sum_probs=73.7
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
..|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|..
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~ 109 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 109 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCC
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999875
No 46
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=5.5e-15 Score=136.33 Aligned_cols=79 Identities=29% Similarity=0.408 Sum_probs=71.8
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecCCCC
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~s~ 95 (728)
...|+|+||+. ++++.|+|++++||.+||++|++++++++++|||+|+||.|+|+++|.+|+|++|++|||+++.....
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 45799999998 99999999999999999999999999999999999999999999999999999999999999876543
No 47
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=2.2e-15 Score=133.41 Aligned_cols=80 Identities=19% Similarity=0.359 Sum_probs=73.1
Q ss_pred CcEEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCc-cccccccccCCcEEEEEEec
Q 004840 17 TTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 17 ssMqItVKtLdG----Kt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd-~TLsdYGIkdGsTLhLVlR~ 91 (728)
..|+|+||+.++ +++.++|++++||.+||++|++++++++++|||+|+||.|+|+ ++|.+|+|++|++|||+.+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 469999999754 7999999999999999999999999999999999999999988 69999999999999999987
Q ss_pred CCCCC
Q 004840 92 PVPSS 96 (728)
Q Consensus 92 p~s~s 96 (728)
...+.
T Consensus 86 ~gg~~ 90 (102)
T 1v5o_A 86 NVGLR 90 (102)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 65543
No 48
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=1.4e-15 Score=137.50 Aligned_cols=79 Identities=15% Similarity=0.275 Sum_probs=72.4
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---------------CCeEEEeCCeecC-Cccccccccc
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS---------------EQQRLICRGKVLK-DDQLLSAYHV 79 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPp---------------eqQRLIF~GKvLk-Dd~TLsdYGI 79 (728)
...|+|+||+++|++++|+|++++||.+||++|++++++++ ++|||+|.||.|+ |+++|++|+|
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 45699999999999999999999999999999999999887 4679999999996 6699999999
Q ss_pred cCCcEEEEEEecCCC
Q 004840 80 EDGHTLHMVVRQPVP 94 (728)
Q Consensus 80 kdGsTLhLVlR~p~s 94 (728)
++|++|||++++...
T Consensus 85 ~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQK 99 (105)
T ss_dssp CSSEEEEEEECSCSC
T ss_pred CCCCEEEEEehhccC
Confidence 999999999997643
No 49
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.38 E-value=8.4e-17 Score=133.07 Aligned_cols=74 Identities=26% Similarity=0.387 Sum_probs=71.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|||+++.+
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlr 74 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPR 74 (76)
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999865
No 50
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=3.1e-15 Score=131.24 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=72.0
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEec
Q 004840 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 12 ae~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~ 91 (728)
....+.+|+|+||+ .++++.|+|++++||.+||++|++++++|+++|||+|+||.| |+.+|.+|+|+++++|||+.+.
T Consensus 11 ~~~~~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 11 GGVGKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CCCCCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSS
T ss_pred CCCCCceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEecc
Confidence 44456789999996 689999999999999999999999999999999999999999 4559999999999999999876
Q ss_pred CC
Q 004840 92 PV 93 (728)
Q Consensus 92 p~ 93 (728)
..
T Consensus 89 ~~ 90 (95)
T 1v86_A 89 IS 90 (95)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 51
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=6.8e-15 Score=127.09 Aligned_cols=78 Identities=26% Similarity=0.411 Sum_probs=71.5
Q ss_pred CCcEEEEEEeCCCcEEEEEecCC-----CCHHHHHHHHHHHhCCCCCCeEEEeCCeecCC-ccccccccccCCcEEEEEE
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQ-----VPVPALKEQIASVTGVLSEQQRLICRGKVLKD-DQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdps-----dTV~dLKekIeektGIPpeqQRLIF~GKvLkD-d~TLsdYGIkdGsTLhLVl 89 (728)
..+|+|+||+ .++.+.|+|+++ +||.+||++|++++|+|+++|||+|+||.|+| +.+|.+|+|++|++|||+.
T Consensus 5 ~~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 5 SSGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp CSSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CCeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 4579999999 589999999995 99999999999999999999999999999998 5689999999999999998
Q ss_pred ecCCC
Q 004840 90 RQPVP 94 (728)
Q Consensus 90 R~p~s 94 (728)
+.+..
T Consensus 84 ~~~~~ 88 (92)
T 1wxv_A 84 KKNSG 88 (92)
T ss_dssp CCSCS
T ss_pred cCCCC
Confidence 76644
No 52
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=4.4e-15 Score=132.70 Aligned_cols=80 Identities=26% Similarity=0.332 Sum_probs=72.7
Q ss_pred CCcEEEEEEeCCC---cEEEEEec--------C-CCCHHHHHHHHHHHh--CCCCCC-eEEEeCCeecCCcccccccccc
Q 004840 16 ETTIEIKIKTLDS---QTYTLRVD--------K-QVPVPALKEQIASVT--GVLSEQ-QRLICRGKVLKDDQLLSAYHVE 80 (728)
Q Consensus 16 ~ssMqItVKtLdG---Kt~tLeVd--------p-sdTV~dLKekIeekt--GIPpeq-QRLIF~GKvLkDd~TLsdYGIk 80 (728)
...|+|+||+.++ +++.|+|+ + ++||.+||++|++++ ++++++ |||+|+||.|+|+++|++|+|+
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 3469999999998 89999954 4 599999999999999 999999 9999999999999999999999
Q ss_pred CCcEEEEEEecCCCC
Q 004840 81 DGHTLHMVVRQPVPS 95 (728)
Q Consensus 81 dGsTLhLVlR~p~s~ 95 (728)
+|++|||+++.+..+
T Consensus 90 ~g~~i~lv~~~~~~~ 104 (107)
T 1x1m_A 90 PGSTVHVLRKSWSGP 104 (107)
T ss_dssp TTCEEEEEESSCCSS
T ss_pred CCCEEEEEeCCCCCC
Confidence 999999999876543
No 53
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.57 E-value=7.4e-15 Score=137.59 Aligned_cols=77 Identities=25% Similarity=0.342 Sum_probs=74.2
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
+..|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.+|++|+|++|++|||++|..
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~ 155 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 155 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecC
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999875
No 54
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=130.62 Aligned_cols=77 Identities=36% Similarity=0.549 Sum_probs=74.0
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
...|+|+||+++|+++.++|++++||.+||++|++++++++++|||+|+||.|+|+++|++|+|++|++|||++|..
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~ 109 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 109 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999865
No 55
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=6.5e-15 Score=132.33 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=67.0
Q ss_pred cEEEEEEeCC----CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecCC
Q 004840 18 TIEIKIKTLD----SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (728)
Q Consensus 18 sMqItVKtLd----GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~ 93 (728)
...|.|+..+ +++++|+|++++||.+||++|++++|+|+++|||||+||+|+|+++|++|+|++|++| +++++..
T Consensus 15 ~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg 93 (100)
T 1wju_A 15 IATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQ 93 (100)
T ss_dssp EEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCC
T ss_pred eEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECC
Confidence 3456666666 7799999999999999999999999999999999999999999999999999999999 4555443
Q ss_pred C
Q 004840 94 P 94 (728)
Q Consensus 94 s 94 (728)
+
T Consensus 94 ~ 94 (100)
T 1wju_A 94 S 94 (100)
T ss_dssp C
T ss_pred C
Confidence 3
No 56
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.56 E-value=5.8e-15 Score=128.02 Aligned_cols=76 Identities=26% Similarity=0.435 Sum_probs=71.6
Q ss_pred CCcEEEEEEeCCCcEEEE-EecCCCCHHHHHHHHHHHhCCCCCCeEEE---eCCeecCCccccccccccCCcEEEEEEec
Q 004840 16 ETTIEIKIKTLDSQTYTL-RVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tL-eVdpsdTV~dLKekIeektGIPpeqQRLI---F~GKvLkDd~TLsdYGIkdGsTLhLVlR~ 91 (728)
+.+|+|+||+ .+++|.| +|++++||.+||++|++++|+|+++|||+ |+||.|+|+.+|++|+|++|++|||+...
T Consensus 5 ~~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 5 SSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred CceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 4579999998 7899999 99999999999999999999999999999 99999999999999999999999999765
Q ss_pred C
Q 004840 92 P 92 (728)
Q Consensus 92 p 92 (728)
.
T Consensus 84 ~ 84 (90)
T 1v5t_A 84 E 84 (90)
T ss_dssp S
T ss_pred c
Confidence 4
No 57
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=8e-15 Score=129.20 Aligned_cols=75 Identities=21% Similarity=0.397 Sum_probs=70.6
Q ss_pred CCcEEEEEEeCCCcEE-EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 16 ETTIEIKIKTLDSQTY-TLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~-tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
..+|+|+||+ .+++| .|+|++++||.+||++|++++|+|+++|||+|+||.|+|+ +|++|+|+++++|||+....
T Consensus 5 ~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 5 SSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp CCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred CcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 4679999997 68999 6999999999999999999999999999999999999999 99999999999999998765
No 58
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4.2e-14 Score=130.48 Aligned_cols=81 Identities=15% Similarity=0.239 Sum_probs=74.4
Q ss_pred CCCCcEEEEEE-eCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 14 SSETTIEIKIK-TLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 14 ~s~ssMqItVK-tLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
-.+..|.|+|+ ...++.+++.++++.||.+||++|+.++++|++.|||+|+||.|+|+.||.+|||++|.||||+++..
T Consensus 11 ~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~ 90 (118)
T 2daf_A 11 VEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFST 90 (118)
T ss_dssp CCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEES
T ss_pred ccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecC
Confidence 44556889988 55688999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CC
Q 004840 93 VP 94 (728)
Q Consensus 93 ~s 94 (728)
.+
T Consensus 91 ~p 92 (118)
T 2daf_A 91 NP 92 (118)
T ss_dssp CT
T ss_pred CC
Confidence 44
No 59
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.55 E-value=1.1e-14 Score=140.32 Aligned_cols=75 Identities=37% Similarity=0.567 Sum_probs=73.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecCC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~ 93 (728)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|...
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~G 75 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999763
No 60
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.54 E-value=8.7e-15 Score=131.22 Aligned_cols=77 Identities=27% Similarity=0.397 Sum_probs=73.5
Q ss_pred CCcEEEEEEeC---CCcEEEEEecC-CCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEec
Q 004840 16 ETTIEIKIKTL---DSQTYTLRVDK-QVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 16 ~ssMqItVKtL---dGKt~tLeVdp-sdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~ 91 (728)
+..|+|+|+++ +|+.+.++|++ ++||.+||++|++++|+|+++|||+|+|+.|+|+.+|++|+|++|++|||+++.
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 35699999998 89999999998 999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 004840 92 P 92 (728)
Q Consensus 92 p 92 (728)
.
T Consensus 105 ~ 105 (111)
T 1we6_A 105 R 105 (111)
T ss_dssp C
T ss_pred C
Confidence 5
No 61
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=134.73 Aligned_cols=79 Identities=18% Similarity=0.352 Sum_probs=71.8
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH------HhCCC--CCCeEEEeCCeecCCccccccccccCCc--EE
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS------VTGVL--SEQQRLICRGKVLKDDQLLSAYHVEDGH--TL 85 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIee------ktGIP--peqQRLIF~GKvLkDd~TLsdYGIkdGs--TL 85 (728)
...|.|+||+++|++++|+|++++||.+||++|++ ++++| +++|||||.||.|+|+++|++|+|+.++ +|
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 35699999999999999999999999999999998 77884 8999999999999999999999999765 78
Q ss_pred EEEEecCCC
Q 004840 86 HMVVRQPVP 94 (728)
Q Consensus 86 hLVlR~p~s 94 (728)
||++|....
T Consensus 95 hlv~r~~~~ 103 (125)
T 2gow_A 95 HLVARETLP 103 (125)
T ss_dssp EEEECSCCS
T ss_pred EEEecCCCC
Confidence 999987643
No 62
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.54 E-value=6.2e-15 Score=131.48 Aligned_cols=75 Identities=23% Similarity=0.338 Sum_probs=65.8
Q ss_pred CCCCcEEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHH-hCCC-CCCeEEEeCCeecCCccccccc--cccCCcEEEE
Q 004840 14 SSETTIEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASV-TGVL-SEQQRLICRGKVLKDDQLLSAY--HVEDGHTLHM 87 (728)
Q Consensus 14 ~s~ssMqItVKtLdGK--t~tLeVdpsdTV~dLKekIeek-tGIP-peqQRLIF~GKvLkDd~TLsdY--GIkdGsTLhL 87 (728)
..+..|+|+||+++++ +++|+|++++||.+||++|+++ .|++ +++|||||+||.|+|+++|++| +|+++++|||
T Consensus 19 ~~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 19 FQGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp ----CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEe
Confidence 3456799999999998 6789999999999999999986 5665 5999999999999999999999 9999999998
Q ss_pred E
Q 004840 88 V 88 (728)
Q Consensus 88 V 88 (728)
+
T Consensus 99 v 99 (99)
T 2kdb_A 99 V 99 (99)
T ss_dssp C
T ss_pred C
Confidence 5
No 63
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.9e-15 Score=133.12 Aligned_cols=74 Identities=38% Similarity=0.678 Sum_probs=69.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEec
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~ 91 (728)
..|+|+||+ +|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+.+|++|+|++|++|+|+++.
T Consensus 27 m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 27 MSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp --CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred cEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 457899998 89999999999999999999999999999999999999999999999999999999999999864
No 64
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.53 E-value=1e-14 Score=134.67 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=64.2
Q ss_pred EEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcccccccccc-------CCcEEEEEEe
Q 004840 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVE-------DGHTLHMVVR 90 (728)
Q Consensus 19 MqItVKtLdGK-t~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIk-------dGsTLhLVlR 90 (728)
|.|+|+. ++ +++|+|++++||.+||++|+.++|||+++|||+|+||.|+|+++|++|+|+ ++++|||++|
T Consensus 3 mfl~ir~--~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 3 VFLMIRR--HKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp EEEEEEE--BTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred EEEEEec--CCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 4455554 54 689999999999999999999999999999999999999999999999999 7999999998
No 65
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.53 E-value=1.6e-14 Score=142.38 Aligned_cols=77 Identities=36% Similarity=0.522 Sum_probs=74.1
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
.-.|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+|+.|+|+.+|++|+|+++++|||+++..
T Consensus 103 ~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlrlr 179 (189)
T 3q3f_A 103 HYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 179 (189)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCC
T ss_pred ccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcC
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999876
No 66
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.52 E-value=1.5e-14 Score=133.59 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=66.5
Q ss_pred EEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccC-------CcEEEEEEe
Q 004840 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVED-------GHTLHMVVR 90 (728)
Q Consensus 19 MqItVKtLdGK-t~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkd-------GsTLhLVlR 90 (728)
|.|+|+...+| ++.++|++++||.+||++|+.++|+|+++|||||.||+|+|++||++|+|++ +++|||++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 45555555555 7889999999999999999999999999999999999999999999999999 999999998
Q ss_pred c
Q 004840 91 Q 91 (728)
Q Consensus 91 ~ 91 (728)
.
T Consensus 81 ~ 81 (118)
T 4ajy_B 81 A 81 (118)
T ss_dssp C
T ss_pred c
Confidence 6
No 67
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.52 E-value=3.3e-14 Score=128.83 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=72.4
Q ss_pred CCCCcEEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccc-cCCcEEEEEEe
Q 004840 14 SSETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMVVR 90 (728)
Q Consensus 14 ~s~ssMqItVKtLdG--Kt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGI-kdGsTLhLVlR 90 (728)
+.+-.|+|+|+...+ .+++|+|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|.+||| ++|++|||++.
T Consensus 20 ~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 20 TQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred CCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 345679999999874 689999999999999999999999999999999999999999999999999 69999999986
Q ss_pred cC
Q 004840 91 QP 92 (728)
Q Consensus 91 ~p 92 (728)
..
T Consensus 100 ~~ 101 (105)
T 4dbg_A 100 SA 101 (105)
T ss_dssp CC
T ss_pred ec
Confidence 54
No 68
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.51 E-value=3.3e-14 Score=132.52 Aligned_cols=77 Identities=26% Similarity=0.433 Sum_probs=70.6
Q ss_pred CcEEEEEEeCCCcEE-EEEecCCCCHHHHHHHH-----HHHhCCCC--CCeEEEeCCeecCCccccccccccCC------
Q 004840 17 TTIEIKIKTLDSQTY-TLRVDKQVPVPALKEQI-----ASVTGVLS--EQQRLICRGKVLKDDQLLSAYHVEDG------ 82 (728)
Q Consensus 17 ssMqItVKtLdGKt~-tLeVdpsdTV~dLKekI-----eektGIPp--eqQRLIF~GKvLkDd~TLsdYGIkdG------ 82 (728)
..|+|+||+++|+++ .+++++++||.+||++| ++++++|+ ++|||||.||.|+|+.+|++|+|+++
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v 94 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAV 94 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCC
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCc
Confidence 679999999999988 69999999999999999 45667886 89999999999999999999999988
Q ss_pred cEEEEEEecCC
Q 004840 83 HTLHMVVRQPV 93 (728)
Q Consensus 83 sTLhLVlR~p~ 93 (728)
.+|||+++...
T Consensus 95 ~tmhlVlrl~g 105 (126)
T 1se9_A 95 TTMHVIIQAPV 105 (126)
T ss_dssp EEEEEEECCCS
T ss_pred EEEEEEeccCC
Confidence 78999998763
No 69
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.50 E-value=6.5e-14 Score=120.39 Aligned_cols=73 Identities=32% Similarity=0.489 Sum_probs=67.0
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEe
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR 90 (728)
.++.+.++. +|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+.+
T Consensus 11 ~~~~~~~~~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 11 STIKLTVKF-GGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp CCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred CcEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 456655554 8999999999999999999999999999999999999999999999999999999999999864
No 70
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.49 E-value=4.2e-14 Score=134.70 Aligned_cols=76 Identities=37% Similarity=0.562 Sum_probs=71.0
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
..|.|+||..+|+++.++|++++||.+||++|+.++|+|+++|||+|+|+.|+|+++|.+|+|++|++|||++|..
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlr 170 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 170 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC---
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecC
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999999864
No 71
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.49 E-value=7.5e-14 Score=126.01 Aligned_cols=76 Identities=22% Similarity=0.420 Sum_probs=71.5
Q ss_pred CcEEEEEEeC----------CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEE
Q 004840 17 TTIEIKIKTL----------DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLH 86 (728)
Q Consensus 17 ssMqItVKtL----------dGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLh 86 (728)
..|+|+|+.. +|+++.|+|++++||.+||++|+.++|+|+++|||+|+|+.|+|+.+|++|+|++|++||
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 4688888875 478999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecC
Q 004840 87 MVVRQP 92 (728)
Q Consensus 87 LVlR~p 92 (728)
|+++..
T Consensus 104 lv~rl~ 109 (115)
T 1we7_A 104 LALKER 109 (115)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 999876
No 72
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.49 E-value=1.1e-13 Score=126.99 Aligned_cols=76 Identities=37% Similarity=0.562 Sum_probs=73.1
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
..|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+.+|++|+|++|++|||++|.+
T Consensus 75 ~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~ 150 (152)
T 3b08_A 75 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 150 (152)
T ss_dssp TCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred cccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 3589999999999999999999999999999999999999999999999999999999999999999999999875
No 73
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.47 E-value=3.5e-15 Score=137.25 Aligned_cols=74 Identities=38% Similarity=0.590 Sum_probs=0.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
|+|+||+++|+++.|+|++++||.+||++|++++++|+++|+|+|+|+.|+|+.+|++|+|++|++|||+++..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~ 74 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (128)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999876
No 74
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.46 E-value=6.1e-14 Score=121.96 Aligned_cols=74 Identities=19% Similarity=0.265 Sum_probs=65.9
Q ss_pred EEEEEE--eCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe-------CCeecCCccccccccccCCcEEEEEE
Q 004840 19 IEIKIK--TLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC-------RGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 19 MqItVK--tLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF-------~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
++|.|. ..+.+.+.++|++++||.+||++|+.++|+|+++|||+| .|+.|+|+++|++|+|++|++|||+.
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd 82 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVD 82 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEe
Confidence 455554 445677899999999999999999999999999999997 48899999999999999999999998
Q ss_pred ecC
Q 004840 90 RQP 92 (728)
Q Consensus 90 R~p 92 (728)
+.|
T Consensus 83 ~~P 85 (86)
T 4b6w_A 83 LQP 85 (86)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 75
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=3.7e-13 Score=120.60 Aligned_cols=74 Identities=11% Similarity=0.161 Sum_probs=66.9
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeecCCccccccccccCCcEEEEEEecC
Q 004840 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 18 sMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF--~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
.|.++++.+.|++++|+|++++||.+||++|++++|||+++|||+| .|+ |+|+.+|++|+|++|++|||++..-
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~ 83 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDL 83 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCC
Confidence 4676666668999999999999999999999999999999999996 566 9999999999999999999988654
No 76
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.42 E-value=1.4e-13 Score=147.73 Aligned_cols=77 Identities=30% Similarity=0.520 Sum_probs=70.1
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH---HhCCCCCCeEEEeCCeecCCccccccccccCCcEE-EEEEec
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS---VTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTL-HMVVRQ 91 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIee---ktGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTL-hLVlR~ 91 (728)
+.+|+|+||+++|++|.|+|++++||.+||++|++ +++|++++|||||+||+|+|+++|++|+|++|++| ||+.|.
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~ 84 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 84 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECC
T ss_pred CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecC
Confidence 45799999999999999999999999999999999 67799999999999999999999999999999999 555554
Q ss_pred C
Q 004840 92 P 92 (728)
Q Consensus 92 p 92 (728)
+
T Consensus 85 ~ 85 (368)
T 1oqy_A 85 K 85 (368)
T ss_dssp C
T ss_pred C
Confidence 3
No 77
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.41 E-value=1.9e-14 Score=137.32 Aligned_cols=76 Identities=37% Similarity=0.553 Sum_probs=0.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecCCC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~s 94 (728)
|+|+|++++|+++.|+|++++||.+||++|++++++|+++|||+|+|+.|+|+.+|++|+|++|++|||+++....
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999987643
No 78
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.41 E-value=6.8e-13 Score=117.42 Aligned_cols=74 Identities=20% Similarity=0.368 Sum_probs=66.6
Q ss_pred CCcEEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC--Ce---ec-CCccccccccccCCcEEEE
Q 004840 16 ETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR--GK---VL-KDDQLLSAYHVEDGHTLHM 87 (728)
Q Consensus 16 ~ssMqItVKtLdG--Kt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~--GK---vL-kDd~TLsdYGIkdGsTLhL 87 (728)
+..+.|+|+...+ +.++++|++++||.+||++|+.++|+|+++|||+|. |+ .| +|+++|++|+|++|++|||
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 5678999998665 488999999999999999999999999999999997 55 44 8999999999999999999
Q ss_pred EE
Q 004840 88 VV 89 (728)
Q Consensus 88 Vl 89 (728)
+-
T Consensus 93 vD 94 (95)
T 2kjr_A 93 VD 94 (95)
T ss_dssp EE
T ss_pred EC
Confidence 74
No 79
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=4.1e-13 Score=116.99 Aligned_cols=72 Identities=22% Similarity=0.293 Sum_probs=65.6
Q ss_pred CCcEEEEEEeCCCcEE--EE-EecCCCCHHHHHHHHHH-HhCCCCCCeEEEeC--CeecCCccccccccccCCcEEEE
Q 004840 16 ETTIEIKIKTLDSQTY--TL-RVDKQVPVPALKEQIAS-VTGVLSEQQRLICR--GKVLKDDQLLSAYHVEDGHTLHM 87 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~--tL-eVdpsdTV~dLKekIee-ktGIPpeqQRLIF~--GKvLkDd~TLsdYGIkdGsTLhL 87 (728)
-.+|+|+||++.|+.+ +| +|++++||.+||++|++ +.++++++|||+|. ||.|+|+.+|++|+|+++++|||
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 3469999999988775 58 99999999999999999 48999999999976 99999999999999999999886
No 80
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.38 E-value=1e-12 Score=116.92 Aligned_cols=76 Identities=20% Similarity=0.254 Sum_probs=66.8
Q ss_pred CCcEEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe---e----cCCccccccccccCCcEEE
Q 004840 16 ETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK---V----LKDDQLLSAYHVEDGHTLH 86 (728)
Q Consensus 16 ~ssMqItVKtLdG--Kt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GK---v----LkDd~TLsdYGIkdGsTLh 86 (728)
+..+.|+|+.... +.++++|++++||.+||++|+.++|||+++|||+|.|+ . ++|+++|++|+|++|++||
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ih 91 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLH 91 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEE
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEE
Confidence 4568888887544 57899999999999999999999999999999999883 3 4899999999999999999
Q ss_pred EEEec
Q 004840 87 MVVRQ 91 (728)
Q Consensus 87 LVlR~ 91 (728)
|+...
T Consensus 92 lvd~~ 96 (97)
T 2kj6_A 92 IIDLD 96 (97)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 98754
No 81
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.38 E-value=8.7e-13 Score=138.64 Aligned_cols=78 Identities=36% Similarity=0.556 Sum_probs=73.1
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEec
Q 004840 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 14 ~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~ 91 (728)
.....|+|+||+++|+++.++|++++||.+||++|++++++++++|||+|+||.|+|+++|++|+|+++++|||++|+
T Consensus 229 ~~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 229 GITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp SSCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 345689999999999999999999999999999999999999999999999999999999999999999999999875
No 82
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=1.3e-12 Score=114.24 Aligned_cols=77 Identities=21% Similarity=0.322 Sum_probs=67.6
Q ss_pred CCcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---ee----cCCccccccccccCCcEEEE
Q 004840 16 ETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KV----LKDDQLLSAYHVEDGHTLHM 87 (728)
Q Consensus 16 ~ssMqItVKtLdGK-t~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~G---Kv----LkDd~TLsdYGIkdGsTLhL 87 (728)
...|.|+|+..... .++++|++++||.+||++|+.++|+|+++|||+|.| +. |+|+++|.+|+|++|++|||
T Consensus 5 ~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred CcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 34589999986543 689999999999999999999999999999999986 43 58999999999999999999
Q ss_pred EEecC
Q 004840 88 VVRQP 92 (728)
Q Consensus 88 VlR~p 92 (728)
+...|
T Consensus 85 ~d~~P 89 (95)
T 1v6e_A 85 IDHSG 89 (95)
T ss_dssp BCCSC
T ss_pred EECCc
Confidence 87654
No 83
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.36 E-value=9.8e-13 Score=117.80 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=68.5
Q ss_pred CcEEEEEEeCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCCe-----------e----cCCcccccccccc
Q 004840 17 TTIEIKIKTLDSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICRGK-----------V----LKDDQLLSAYHVE 80 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVd-psdTV~dLKekIeektGIPpeqQRLIF~GK-----------v----LkDd~TLsdYGIk 80 (728)
..|.|+||+.+|+. .|+|+ +++||.+||++|++++++|+++|+|+|.++ . ++|+++|++|+|+
T Consensus 6 ~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp CCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred CeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 44999999999976 79999 999999999999999999999999999988 4 5889999999999
Q ss_pred CCcEEEEEEecC
Q 004840 81 DGHTLHMVVRQP 92 (728)
Q Consensus 81 dGsTLhLVlR~p 92 (728)
+|++|||+....
T Consensus 85 ~G~~L~l~~~~~ 96 (107)
T 1wf9_A 85 HGSMVYLAYEGE 96 (107)
T ss_dssp TTCEEECCCSSC
T ss_pred CCCEEEEEeCCC
Confidence 999999987644
No 84
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.35 E-value=2.7e-12 Score=117.56 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=67.7
Q ss_pred CcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---ee----cCCccccccccccCCcEEEEE
Q 004840 17 TTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KV----LKDDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 17 ssMqItVKtLdGK-t~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~G---Kv----LkDd~TLsdYGIkdGsTLhLV 88 (728)
..|.|+|+..... .++++|++++||.+||++|+.++|+|+++|||+|.| +. ++|+++|.+|+|++|++|||+
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 3689999986543 688999999999999999999999999999999987 42 489999999999999999999
Q ss_pred EecCC
Q 004840 89 VRQPV 93 (728)
Q Consensus 89 lR~p~ 93 (728)
...|.
T Consensus 85 d~~p~ 89 (122)
T 1t0y_A 85 DVTGG 89 (122)
T ss_dssp ECTTC
T ss_pred eCCCC
Confidence 86653
No 85
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.31 E-value=5.9e-12 Score=111.20 Aligned_cols=78 Identities=17% Similarity=0.333 Sum_probs=73.5
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 15 s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
....|+|+||..+|+.+.+.|.+++++..||++++++.+++++++||+|+|+.|++++|+++|++++|++|+|++++.
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~ 81 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 81 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCE
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 345799999999999999999999999999999999999999999999999999999999999999999999999865
No 86
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.24 E-value=7.5e-13 Score=130.82 Aligned_cols=69 Identities=22% Similarity=0.357 Sum_probs=0.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
|+|+||+++|++++|+|++++||.+||++|++++|||+++|||+|.|++|+|+.+|+ ++++|||++|+.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLr 69 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLL 69 (189)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecC
Confidence 899999999999999999999999999999999999999999999999999999999 899999999875
No 87
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.20 E-value=7.1e-11 Score=103.96 Aligned_cols=76 Identities=17% Similarity=0.344 Sum_probs=73.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
..|+|+||..+|+.+.+.|.+++++..||++++++.|+++..+||+|+|+.|.+++|+++|++++|++|++++++.
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 79 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 79 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999865
No 88
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.19 E-value=6.3e-11 Score=99.12 Aligned_cols=71 Identities=17% Similarity=0.350 Sum_probs=68.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
|+|+|+..+|+.+.+.|.+++++..||++++++.|++++.+||+|+|+.|.+++|+++|++++|++|++++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999973
No 89
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.19 E-value=2e-11 Score=128.68 Aligned_cols=76 Identities=25% Similarity=0.350 Sum_probs=69.1
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE---eCCeecCCccccccccccCCcEEEEEEecC
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI---F~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
.+.|+|+||+ .|++|+|+|++++||.+||++|++++|||+++|||+ |+||.|+|+.+|++|+|++|++|||+....
T Consensus 3 ~~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 3 VKEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp -CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 3569999998 799999999999999999999999999999999999 899999999999999999999999997644
No 90
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.19 E-value=1.5e-11 Score=105.48 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=65.1
Q ss_pred EEEEEEeCCCcEEEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeC--CeecC---CccccccccccCCcEEEEEEecC
Q 004840 19 IEIKIKTLDSQTYTLR-VDKQVPVPALKEQIASVTGVLSEQQRLICR--GKVLK---DDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 19 MqItVKtLdGKt~tLe-VdpsdTV~dLKekIeektGIPpeqQRLIF~--GKvLk---Dd~TLsdYGIkdGsTLhLVlR~p 92 (728)
|+|+||+.+|+. .+. |++++||.+||++|++++++++++|||+|. +|.|+ |+++|++|||.+|++|||.....
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~~ 79 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQT 79 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCSC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCCC
Confidence 789999999965 477 999999999999999999999999999986 48874 67899999999999999986643
No 91
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.18 E-value=8.1e-11 Score=103.54 Aligned_cols=78 Identities=17% Similarity=0.343 Sum_probs=73.2
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 15 s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
....|+|+|+..+|+.+.+.|.+++++..||++++++.|++++.+||+|.|+.|.+++|+.+|++++|++|++++++.
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 356899999999999999999999999999999999999999999999999999999999999999999999998753
No 92
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.16 E-value=1.6e-10 Score=104.20 Aligned_cols=78 Identities=17% Similarity=0.343 Sum_probs=74.2
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 15 s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
....|+|+|+..+|+.+.|.|.+++++..||++++++.+++++.+||+|.|+.|.+++|+.+|++++|++|+|++++.
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 98 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 98 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCC
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 346899999999999999999999999999999999999999999999999999999999999999999999998765
No 93
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.16 E-value=9.9e-11 Score=106.65 Aligned_cols=79 Identities=14% Similarity=0.305 Sum_probs=74.5
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 14 ~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
.....|+|+|+..+|+.+.|.|.+++++..||++++++.+++++.+||+|.|+.|.+++|+.+|++++|++|+|++...
T Consensus 22 ~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~ 100 (110)
T 2k8h_A 22 EETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQT 100 (110)
T ss_dssp CCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCC
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEccc
Confidence 3446799999999999999999999999999999999999999999999999999999999999999999999998764
No 94
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.16 E-value=1.6e-10 Score=98.64 Aligned_cols=73 Identities=11% Similarity=0.297 Sum_probs=69.8
Q ss_pred CCcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEE
Q 004840 16 ETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 16 ~ssMqItVKtLdGK-t~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLV 88 (728)
...|+|+|+..+|+ .+.+.|.+++++..||++++++.|++++++||+|.|+.|.+++|+.+|++++|++|+++
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35699999999996 89999999999999999999999999999999999999999999999999999999986
No 95
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.12 E-value=3.1e-10 Score=102.82 Aligned_cols=78 Identities=23% Similarity=0.331 Sum_probs=73.2
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 14 ~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
.....|+|+|+. +|+.+.+.|.+++++..||++++++.|+++..+||+|+|+.|.+++|+.+|++++|++|++++++.
T Consensus 27 ~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 27 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp CCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred CCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 345679999999 999999999999999999999999999999999999999999999999999999999999998753
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.04 E-value=5e-10 Score=98.06 Aligned_cols=77 Identities=23% Similarity=0.298 Sum_probs=66.8
Q ss_pred CCcEEEEEEe---CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC------ee-c-CCccccccccccCCcE
Q 004840 16 ETTIEIKIKT---LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG------KV-L-KDDQLLSAYHVEDGHT 84 (728)
Q Consensus 16 ~ssMqItVKt---LdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~G------Kv-L-kDd~TLsdYGIkdGsT 84 (728)
...++|+|+. .+++.+.+.+.+++||.+||.+|+..+|+|+..|||+|.+ .. | +|..+|.+|+|.+|++
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~ 86 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC 86 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence 3568888876 4688999999999999999999999999999999999863 22 5 6778999999999999
Q ss_pred EEEEEecC
Q 004840 85 LHMVVRQP 92 (728)
Q Consensus 85 LhLVlR~p 92 (728)
|||....|
T Consensus 87 I~V~d~~p 94 (97)
T 1wjn_A 87 LLVRWSGP 94 (97)
T ss_dssp EEEECCSS
T ss_pred EEEEecCC
Confidence 99998654
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.79 E-value=2.2e-08 Score=92.12 Aligned_cols=76 Identities=20% Similarity=0.300 Sum_probs=72.1
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEec
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~ 91 (728)
...|+|+|+..+|+.+.|.|.+++++..|++..+++.|+++..+||+|.|+.|.++.|..+|++++|++|++++..
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999864
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.56 E-value=1.9e-07 Score=93.09 Aligned_cols=79 Identities=23% Similarity=0.313 Sum_probs=73.7
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecCC
Q 004840 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (728)
Q Consensus 14 ~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~ 93 (728)
.+...|+|+|+. +|+.+.+.|.+++++..||+..+++.|+++.++||+|+|+.|.+++|..+|++++|++|++++.+..
T Consensus 25 ~~~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~g 103 (200)
T 3pge_A 25 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 103 (200)
T ss_dssp CCCCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSC
T ss_pred CCCCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCc
Confidence 345679999985 8999999999999999999999999999999999999999999999999999999999999998753
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.51 E-value=1.5e-07 Score=93.62 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=71.9
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 14 ~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
++...|+|+|+. +|+.+.|.|.+++++..||+..+++.|+++..+||+|+|+.|.+++|..+|+++||++|++++.+.
T Consensus 53 dp~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~ 130 (207)
T 3tix_A 53 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQI 130 (207)
T ss_dssp --CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCC
T ss_pred CCCCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecc
Confidence 345679999985 899999999999999999999999999999999999999999999999999999999999998764
No 100
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.22 E-value=6.1e-06 Score=73.80 Aligned_cols=77 Identities=12% Similarity=0.320 Sum_probs=70.6
Q ss_pred CCCCCCcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEE
Q 004840 12 AESSETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 12 ae~s~ssMqItVKtLdGK-t~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLV 88 (728)
.......|.|+|+..+++ .+.+.|.+++++..|++..+++.+++++..|++|.|+.|..+.|..++++++|++|.++
T Consensus 19 ~~~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 19 STETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp -CCSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCCCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 344567899999998884 88999999999999999999999999999999999999999999999999999999885
No 101
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.19 E-value=2e-07 Score=93.96 Aligned_cols=77 Identities=23% Similarity=0.324 Sum_probs=0.0
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 15 s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
+...|+|+| ..+|+.+.+.|.+++++..||+..+++.|++++.+|++|+|+.|.+++|..+|+++||++|++++...
T Consensus 18 p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~ 94 (227)
T 3v7o_A 18 PETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (227)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEeccc
Confidence 346799999 66899999999999999999999999999999999999999999999999999999999999998765
No 102
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.17 E-value=7.9e-07 Score=76.35 Aligned_cols=71 Identities=13% Similarity=0.245 Sum_probs=59.9
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCee---c--CCccccccccccCCcEEEEE
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKV---L--KDDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKv---L--kDd~TLsdYGIkdGsTLhLV 88 (728)
++|.|.||..+| ++.|+|++++||.+||++|+++++++.+.|.|.+.-.. | .++.+|+++||++|++|+|.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 358999999876 66788999999999999999999999988877665443 3 47789999999999999874
No 103
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.12 E-value=1.2e-05 Score=69.86 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=68.5
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpe-qQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
.-+.+.++..+...+.+.|.++.+|.+|.+..+.+.+|+++ ..+|.|.|..|+.+.++.+|+++||+.|.+++
T Consensus 8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 45778888888888999999999999999999999999998 99999999999999999999999999999885
No 104
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.93 E-value=2.5e-05 Score=77.66 Aligned_cols=78 Identities=23% Similarity=0.317 Sum_probs=72.4
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecCC
Q 004840 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (728)
Q Consensus 15 s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p~ 93 (728)
+...|.|+|+. +++.+.+.|..++++..||+..+++.|++++++|++|.|+.+.++++..++.++++++|.++.++..
T Consensus 18 ~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred CCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 34679999998 7888899999999999999999999999999999999999999999999999999999999987653
No 105
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.90 E-value=8.6e-05 Score=66.48 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=71.2
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEec
Q 004840 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 14 ~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~ 91 (728)
.....|.|+|+. +|....+.|..++....|++..+++.|+.+...|++|+|..+.++.|-.+++++++++|.+++.+
T Consensus 17 ~~~~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 17 ETPRLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp SCCCCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred CCCCeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 344569999996 78999999999999999999999999999999999999999999999999999999999999854
No 106
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.76 E-value=0.00011 Score=65.62 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=52.9
Q ss_pred EEEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec--CCccccccccc-cCCcEEEEEE
Q 004840 20 EIKIKTL-DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL--KDDQLLSAYHV-EDGHTLHMVV 89 (728)
Q Consensus 20 qItVKtL-dGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvL--kDd~TLsdYGI-kdGsTLhLVl 89 (728)
-|+|-.+ ..+.+.+.|.+++||..||++|++++||++.+|+|+|.||.| +.+..-..|-- ....-|.|+-
T Consensus 14 vvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 14 VIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp EEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred eEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 3444444 478889999999999999999999999999999999999876 44455555544 3334555544
No 107
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.70 E-value=5.1e-06 Score=89.30 Aligned_cols=77 Identities=23% Similarity=0.335 Sum_probs=0.0
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 15 s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
+...|+|+|+. +++.+.+.|.+++++..||+..+++.|++++.+|++|+|+.|.+++|.+++++++|++|+++..+.
T Consensus 18 ~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~ 94 (360)
T 3ix6_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (360)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccC
Confidence 44678999987 688889999999999999999999999999999999999999999999999999999999998764
No 108
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.59 E-value=9.3e-06 Score=86.67 Aligned_cols=76 Identities=24% Similarity=0.338 Sum_probs=0.0
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
...|.|+|+. +++.+.+.|.+++++..||+..+++.|+++.++|++|+|+.|.+++|..++++++|++|++++...
T Consensus 28 ~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~ 103 (389)
T 4da1_A 28 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQI 103 (389)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccc
Confidence 3568888887 778888999999999999999999999999999999999999999999999999999999998764
No 109
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=97.51 E-value=2e-06 Score=76.68 Aligned_cols=45 Identities=4% Similarity=-0.121 Sum_probs=40.1
Q ss_pred CCCCCC--CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 99 GTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 99 ~~qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
-++||+ .+|+++.++|+++|||++||++|+ ++|+|+++|||+|+.
T Consensus 21 mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~G 68 (93)
T 3plu_A 21 MIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGG 68 (93)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred eEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCC
Confidence 355555 689999999999999999999999 999999999998854
No 110
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=97.36 E-value=3.8e-06 Score=71.27 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=40.7
Q ss_pred ccCCcEEEEEEecCCCCCCCCCCCCC--CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 79 VEDGHTLHMVVRQPVPSSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 79 IkdGsTLhLVlR~p~s~sss~~qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
+.++++++++++.+ ..|++++ .+|+++.++|++++||++||.+|+ +.|+|+++|||+|+.
T Consensus 2 ~~~~~~~~~~~~~~-----~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~G 64 (88)
T 4eew_A 2 MEPNDSTSTAVEEP-----DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQG 64 (88)
T ss_dssp -------------C-----CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred CCCCCceEEeecCC-----CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECC
Confidence 44566777776543 2356666 689999999999999999999999 999999999998854
No 111
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=97.26 E-value=4.2e-05 Score=75.79 Aligned_cols=44 Identities=5% Similarity=-0.048 Sum_probs=0.0
Q ss_pred CCCCC--CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 100 ~qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
|+|+| ++|++++++|++++||++||.+|+ .+|||+++|||+|+.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~G 47 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNG 47 (189)
T ss_dssp -----------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecC
Confidence 45666 679999999999999999999999 999999999999976
No 112
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.25 E-value=0.00058 Score=60.62 Aligned_cols=75 Identities=12% Similarity=0.081 Sum_probs=70.3
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEecC
Q 004840 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 18 sMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~p 92 (728)
-|.|+|-..+++..++.|.+++++.++-++.++|+|+.+++..|.|++|.|+-...+...||.+|++|.|+.+..
T Consensus 9 ~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~ 83 (90)
T 2al3_A 9 GSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSR 83 (90)
T ss_dssp -CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSS
T ss_pred ccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999997654
No 113
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.18 E-value=0.00047 Score=64.62 Aligned_cols=70 Identities=26% Similarity=0.308 Sum_probs=58.5
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-------------------------------------CeEEE
Q 004840 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-------------------------------------QQRLI 62 (728)
Q Consensus 20 qItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpe-------------------------------------qQRLI 62 (728)
.|+|+.++|+..++.|+.+.+|.+++..|+.+.||+.. .|+|-
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 69999999999999999999999999999999998744 33442
Q ss_pred e--CCeecCCccccccccccCCcEEEEEE
Q 004840 63 C--RGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 63 F--~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
. ....|+++.+|.++||.++++|.|-.
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence 2 23567889999999999999966543
No 114
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.12 E-value=1.4e-05 Score=71.90 Aligned_cols=43 Identities=5% Similarity=-0.130 Sum_probs=38.8
Q ss_pred CCCCC--CCCCccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 100 ~qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
|+|++ ++|+++.++|++++||++||.+|+ ++|||+++|||+|+
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~ 74 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW 74 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 44555 578999999999999999999999 99999999999987
No 115
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.09 E-value=0.0012 Score=57.49 Aligned_cols=70 Identities=21% Similarity=0.339 Sum_probs=60.2
Q ss_pred cEEEEEEe--CCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-----CCeEEEeCCeecCCccccccccccCCcEEEE
Q 004840 18 TIEIKIKT--LDSQTYTLRVDKQVPVPALKEQIASVTGVLS-----EQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (728)
Q Consensus 18 sMqItVKt--LdGKt~tLeVdpsdTV~dLKekIeektGIPp-----eqQRLIF~GKvLkDd~TLsdYGIkdGsTLhL 87 (728)
-|.|+|.. -.++.+.++|....||.+|++.+.+.+++.. ...|+.-++..|.+++.|++|+|.+|+.|.+
T Consensus 4 yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 4 YIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 46677664 4689999999999999999999999988754 2358888999999999999999999999875
No 116
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.06 E-value=2.2e-05 Score=68.45 Aligned_cols=39 Identities=8% Similarity=-0.102 Sum_probs=35.5
Q ss_pred CCCCccccccc--cccchhcccccc-c-cCCCCchhHHHHHHh
Q 004840 105 GTSRSHGSHVA--PSVVIETFNLPD-R-GDGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~--pSdTVesLK~kI-Q-~EGIPpDQQRLIFAv 143 (728)
+.|++++++|+ +++||.+||.+| + .+|+|+++|||+|++
T Consensus 9 l~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~G 51 (87)
T 2lxa_A 9 IQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKG 51 (87)
T ss_dssp CSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETT
T ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECC
Confidence 68888888866 999999999999 8 999999999999975
No 117
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.06 E-value=5.4e-05 Score=68.10 Aligned_cols=38 Identities=11% Similarity=-0.017 Sum_probs=35.4
Q ss_pred CCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 106 tGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
.++.+.++|++++||++||.+|+ ++|+|+++|||||+.
T Consensus 28 ~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~G 66 (100)
T 1wju_A 28 KDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINK 66 (100)
T ss_dssp CSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETT
T ss_pred CCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCC
Confidence 36788999999999999999999 999999999999885
No 118
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.90 E-value=4e-05 Score=67.91 Aligned_cols=66 Identities=14% Similarity=0.205 Sum_probs=38.2
Q ss_pred ccccccccccCCcEEEEEEecCCCCCCCCCCCCC-CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 71 DQLLSAYHVEDGHTLHMVVRQPVPSSSDGTHNLP-GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 71 d~TLsdYGIkdGsTLhLVlR~p~s~sss~~qIfV-ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
...+++|.|. +|.+|.++.. -.+.+++ ..|+++.++|++++||++||.+|+ ..|+|++.|||+|+.
T Consensus 7 ~~~~~~~~~~--~t~~l~l~~~-----m~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G 74 (101)
T 3m63_B 7 HHPMSDYDIP--TTENLYFQGA-----MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSG 74 (101)
T ss_dssp -----------------------------CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETT
T ss_pred cCCccccCCC--cceeecccCC-----cEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECC
Confidence 3567889884 5666655432 1233444 578899999999999999999999 999999999998863
No 119
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=95.91 E-value=0.00016 Score=59.21 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=38.1
Q ss_pred CCCC--CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 101 HNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 101 qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
++++ .+|+++.++|++++||++||.+|+ ..|+|++.|+|+|+.
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~g 47 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAG 47 (76)
Confidence 4444 578888999999999999999999 999999999999874
No 120
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=96.84 E-value=2.9e-05 Score=64.41 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=38.6
Q ss_pred CCCCC--CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 100 ~qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
|++++ .+|+++.++|++++||++||.+|+ .+|+|+++|||+|+.
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G 51 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEG 51 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECC
Confidence 44444 578999999999999999999999 999999999998864
No 121
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.81 E-value=0.006 Score=52.09 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=62.3
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeec---CCccccccccccCCcEEEEEE
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVL---KDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--F~GKvL---kDd~TLsdYGIkdGsTLhLVl 89 (728)
+...+|.||..+|+.+.-.+..++||.+|...|.. .+......+|+ |-.|.| +.+++|.++|+.+..+|+|-.
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 45678999999999998899999999999999987 56777888887 557888 346899999999999988754
No 122
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=96.72 E-value=6.3e-05 Score=63.21 Aligned_cols=45 Identities=11% Similarity=0.154 Sum_probs=39.2
Q ss_pred CCCCCC--CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 99 GTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 99 ~~qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
.|++++ ..|+++.++|++++||.+||.+|+ ..|+|++.|||+|..
T Consensus 12 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G 59 (88)
T 3dbh_I 12 SMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSG 59 (88)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETT
T ss_pred cEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECC
Confidence 355555 578899999999999999999999 999999999998854
No 123
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=96.72 E-value=4e-05 Score=65.23 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=36.6
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
.+|+++.++|++++||++||.+|+ +.|+|+++|||+|+.
T Consensus 13 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~G 52 (90)
T 4dwf_A 13 LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQG 52 (90)
T ss_dssp TTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECC
Confidence 578999999999999999999999 999999999999874
No 124
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=96.62 E-value=5e-05 Score=65.07 Aligned_cols=39 Identities=8% Similarity=-0.020 Sum_probs=36.6
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
.+|+++.++|++++||++||.+|+ .+|+|+++|||+|+.
T Consensus 18 l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G 57 (84)
T 2kk8_A 18 LNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDG 57 (84)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred cCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECC
Confidence 688999999999999999999999 999999999999863
No 125
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=96.61 E-value=4.3e-05 Score=70.63 Aligned_cols=38 Identities=8% Similarity=-0.077 Sum_probs=34.2
Q ss_pred CCC-ccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 106 TSR-SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 106 tGk-Titl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
.++ ++.++|++++||++||.+|+ ++|||+++|||+|+.
T Consensus 9 ~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~G 48 (118)
T 2fnj_B 9 RHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDD 48 (118)
T ss_dssp EBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred cCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECC
Confidence 454 58899999999999999999 999999999999764
No 126
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=96.56 E-value=8.6e-05 Score=63.65 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=40.3
Q ss_pred CCCCCCC--CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 98 DGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 98 s~~qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
..|++++ .+|+++.++|++++||.+||.+|+ ..|+|++.|||+|..
T Consensus 16 ~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~G 64 (91)
T 3v6c_B 16 GSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 64 (91)
T ss_dssp CSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETT
T ss_pred CeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECC
Confidence 3456665 688999999999999999999999 999999999998863
No 127
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=96.56 E-value=0.00037 Score=63.87 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCCC--CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 101 HNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 101 qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
++++ .+|+++.++|++++||++||.+|+ ..|||++.|+|+|..
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G 47 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG 47 (128)
T ss_dssp ----------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECC
Confidence 3444 678899999999999999999999 999999999999864
No 128
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=96.52 E-value=8.3e-05 Score=63.71 Aligned_cols=39 Identities=13% Similarity=0.252 Sum_probs=36.4
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
.+|+++.++|++++||++||.+|+ ..|+|+++|||+|+.
T Consensus 8 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G 47 (88)
T 4fbj_B 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSG 47 (88)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETT
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECC
Confidence 578999999999999999999999 999999999998864
No 129
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.52 E-value=9.6e-05 Score=66.16 Aligned_cols=37 Identities=5% Similarity=-0.031 Sum_probs=34.5
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHH
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIF 141 (728)
.+|+++.++|+++++|++||.+|+ ++|||+++|+|+|
T Consensus 16 ~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~ 53 (100)
T 2dzm_A 16 YRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKG 53 (100)
T ss_dssp CSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEEC
T ss_pred eCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEc
Confidence 578999999999999999999999 9999999999853
No 130
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.52 E-value=0.016 Score=52.16 Aligned_cols=78 Identities=12% Similarity=0.151 Sum_probs=65.2
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC---CccccccccccCCcEEEEEE
Q 004840 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK---DDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 15 s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--F~GKvLk---Dd~TLsdYGIkdGsTLhLVl 89 (728)
.....+|.||..+|+.+.-.+..++||.+|.+-|....+.+.....|+ |--|.|. .+++|.++|+.+..+|++..
T Consensus 10 ~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 10 RSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 345689999999999999999999999999999999877776777776 5678885 36899999999988888876
Q ss_pred ecC
Q 004840 90 RQP 92 (728)
Q Consensus 90 R~p 92 (728)
...
T Consensus 90 ~~~ 92 (109)
T 2dzk_A 90 AGR 92 (109)
T ss_dssp CSS
T ss_pred CcC
Confidence 543
No 131
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.00014 Score=64.67 Aligned_cols=39 Identities=8% Similarity=-0.089 Sum_probs=36.5
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
.+|+++.++|++++||.+||.+|+ ..|||+++|||+|.+
T Consensus 9 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G 48 (106)
T 3m62_B 9 FKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSG 48 (106)
T ss_dssp TTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETT
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECC
Confidence 578999999999999999999999 999999999999864
No 132
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=96.38 E-value=0.00054 Score=65.40 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCCC--CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 101 HNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 101 qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
+|++ .+|+++.++|++++||++||.+|+ .+|||+++|+|+|+.
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~G 47 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG 47 (152)
T ss_dssp ----------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECC
Confidence 4455 678899999999999999999999 999999999999975
No 133
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.29 E-value=0.02 Score=50.67 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=65.9
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC---CeecCCccccccccccCCcEEEEEEec
Q 004840 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR---GKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 15 s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~---GKvLkDd~TLsdYGIkdGsTLhLVlR~ 91 (728)
++.++++.|.+...++..++|++..++.+|.-.|++|+.+.+++-.|.-. +..|+-+++|.||||++ |+.+-.+
T Consensus 7 PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~~ 83 (91)
T 2daj_A 7 GEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDVN 83 (91)
T ss_dssp CCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEECC
T ss_pred CccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hheeccc
Confidence 45789999999988999999999999999999999999999999988754 56789999999999986 7776655
Q ss_pred C
Q 004840 92 P 92 (728)
Q Consensus 92 p 92 (728)
.
T Consensus 84 ~ 84 (91)
T 2daj_A 84 R 84 (91)
T ss_dssp C
T ss_pred c
Confidence 4
No 134
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=96.28 E-value=0.00033 Score=61.23 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=36.6
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
..|+++.++|+++++|+.||.+|+ ++|||+++|||+|++
T Consensus 29 ~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~G 68 (97)
T 1wyw_B 29 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEG 68 (97)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECC
Confidence 578999999999999999999999 999999999999975
No 135
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=96.26 E-value=0.00012 Score=60.42 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=34.7
Q ss_pred CCCCcc-ccc-cccccchhccccccc-cCCCCchhHHHHHH
Q 004840 105 GTSRSH-GSH-VAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 105 ltGkTi-tl~-V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
.+|+++ .++ |++++||++||.+|+ ..|+|+++|||+|+
T Consensus 10 ~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~ 50 (78)
T 2faz_A 10 MDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR 50 (78)
T ss_dssp TTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 568885 898 999999999999999 99999999999875
No 136
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.22 E-value=0.029 Score=51.80 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=64.0
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeec--C-CccccccccccCCcEEEEE
Q 004840 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVL--K-DDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 14 ~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--F~GKvL--k-Dd~TLsdYGIkdGsTLhLV 88 (728)
......+|.||..+|+.+.-.+..++||.+|...|..+ +.+.....|+ |-.|.| . .+++|.++++.+..+|+|.
T Consensus 39 ~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 39 VNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp CSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 34567899999999999999999999999999999887 7777778886 568888 3 3689999999998888876
Q ss_pred Ee
Q 004840 89 VR 90 (728)
Q Consensus 89 lR 90 (728)
..
T Consensus 118 ~~ 119 (124)
T 1wj4_A 118 ES 119 (124)
T ss_dssp EC
T ss_pred Ec
Confidence 53
No 137
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=96.20 E-value=0.00011 Score=60.91 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=36.3
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
..|+++.++|+++++|++||.+|+ ++|+|+++|||+|+.
T Consensus 11 ~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G 50 (79)
T 2uyz_B 11 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEG 50 (79)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECC
Confidence 478889999999999999999999 999999999998874
No 138
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=96.20 E-value=0.00011 Score=68.10 Aligned_cols=35 Identities=6% Similarity=-0.114 Sum_probs=32.7
Q ss_pred ccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 109 Titl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
++.++|++++||++||.+|+ ++|||+++|||||+.
T Consensus 13 TI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~G 48 (118)
T 4ajy_B 13 TIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDD 48 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred EEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCC
Confidence 67889999999999999999 999999999999864
No 139
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=96.18 E-value=0.00022 Score=63.49 Aligned_cols=39 Identities=8% Similarity=-0.072 Sum_probs=33.9
Q ss_pred CCCCcccc--ccccccchhcccccc-c-cCCCCchhHHHHHHh
Q 004840 105 GTSRSHGS--HVAPSVVIETFNLPD-R-GDGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl--~V~pSdTVesLK~kI-Q-~EGIPpDQQRLIFAv 143 (728)
++|+++++ +|.+++||++||.+| + .+|+|+++|||+|++
T Consensus 27 l~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~G 69 (98)
T 4a20_A 27 IQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKG 69 (98)
T ss_dssp CSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETT
T ss_pred CCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECC
Confidence 57887767 556999999999999 7 889999999999874
No 140
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.00022 Score=62.27 Aligned_cols=45 Identities=16% Similarity=0.182 Sum_probs=39.7
Q ss_pred CCCCCC--CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 99 GTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 99 ~~qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
.|++++ ..|+++.++|++++||.+||.+|+ ..|+|++.|||+|..
T Consensus 22 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G 69 (98)
T 4hcn_B 22 PMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG 69 (98)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETT
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECC
Confidence 355555 688999999999999999999999 999999999998864
No 141
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=96.04 E-value=0.00052 Score=58.61 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=35.3
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
.+|+++.++|++++||++||.+|+ ..|||+++|||+|+
T Consensus 12 ~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 50 (88)
T 2hj8_A 12 NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 50 (88)
T ss_dssp TTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 467888999999999999999999 99999999999875
No 142
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=96.00 E-value=0.00023 Score=60.96 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=39.6
Q ss_pred CCCCCC--CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 99 GTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 99 ~~qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
+|+|++ .+|+++.++|++++||++||.+|+ ..|+|++.|||+|..
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~G 56 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAG 56 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETT
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECC
Confidence 456665 789999999999999999999999 999999999998863
No 143
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.99 E-value=0.00023 Score=59.84 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=38.7
Q ss_pred CCCCCC--CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 99 GTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 99 ~~qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
.|++++ ..++++.++|++++||.+||.+|+ ..|+|++.|||+|..
T Consensus 7 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~G 54 (87)
T 1wh3_A 7 GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQG 54 (87)
T ss_dssp SEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETT
T ss_pred CEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECC
Confidence 344544 568888999999999999999999 999999999998763
No 144
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=95.96 E-value=0.00024 Score=60.90 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=36.1
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
.+|+++.++|++++||.+||.+|+ ..|+|++.|||+|..
T Consensus 9 ~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G 48 (96)
T 3k9o_B 9 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 48 (96)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECC
Confidence 578889999999999999999999 999999999999864
No 145
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=95.95 E-value=0.00035 Score=60.21 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=37.4
Q ss_pred CCCCCC-CCCCcccc-ccccccchhccccccc-cCCCCchhHHHH
Q 004840 99 GTHNLP-GTSRSHGS-HVAPSVVIETFNLPDR-GDGVPSEISQIV 140 (728)
Q Consensus 99 ~~qIfV-ltGkTitl-~V~pSdTVesLK~kIQ-~EGIPpDQQRLI 140 (728)
.|.+++ ..++++.+ +|++++||++||.+|+ .+|||+++|||+
T Consensus 7 ~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi 51 (90)
T 1v5t_A 7 GLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLL 51 (90)
T ss_dssp SCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred eEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEE
Confidence 456665 56888889 9999999999999999 999999999998
No 146
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.94 E-value=0.00026 Score=62.82 Aligned_cols=44 Identities=9% Similarity=-0.037 Sum_probs=38.7
Q ss_pred CCCCC--CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 100 ~qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
|++++ ..|+++.++|.+++||++||.+|+ +.|+|+++|||+|+.
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G 70 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSG 70 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETT
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECC
Confidence 44555 578899999999999999999999 999999999999863
No 147
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=95.93 E-value=0.00047 Score=57.19 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=35.7
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
..|+++.++|++++||.+||.+|+ ..|+|++.|||+|..
T Consensus 11 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g 50 (85)
T 3mtn_B 11 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 50 (85)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETT
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECC
Confidence 467888999999999999999999 999999999998864
No 148
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=95.86 E-value=0.0003 Score=58.80 Aligned_cols=39 Identities=10% Similarity=0.138 Sum_probs=35.3
Q ss_pred CCCCccccccccccchhccccccc-c---CCCCchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-G---DGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~---EGIPpDQQRLIFAv 143 (728)
..|+++.++|++++||++||.+|+ . +|+|+++|||+|+.
T Consensus 13 ~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~G 55 (85)
T 2wyq_A 13 LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAG 55 (85)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETT
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECC
Confidence 568888999999999999999999 5 89999999998863
No 149
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=95.82 E-value=0.00031 Score=61.29 Aligned_cols=35 Identities=9% Similarity=0.034 Sum_probs=32.7
Q ss_pred ccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 109 Titl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
++.++|++++||++||.+|+ .+|+|+++|||+|+.
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G 61 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSG 61 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETT
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECC
Confidence 78899999999999999999 999999999998763
No 150
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.82 E-value=0.00036 Score=59.02 Aligned_cols=43 Identities=12% Similarity=-0.053 Sum_probs=37.0
Q ss_pred CCCCC--CCC-Ccccc-ccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 100 THNLP--GTS-RSHGS-HVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 100 ~qIfV--ltG-kTitl-~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
|++++ ..| +++.+ +|++++||.+||.+|+ ..|+|+++|||+|.
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 55 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYR 55 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 44444 467 68899 5999999999999999 99999999999886
No 151
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=95.82 E-value=0.013 Score=61.74 Aligned_cols=109 Identities=15% Similarity=0.089 Sum_probs=84.7
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC----CCCCCeEEEe------CCeecCCccccccccccCCcEEEE
Q 004840 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG----VLSEQQRLIC------RGKVLKDDQLLSAYHVEDGHTLHM 87 (728)
Q Consensus 18 sMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektG----IPpeqQRLIF------~GKvLkDd~TLsdYGIkdGsTLhL 87 (728)
.+.|+|... +.+.++.+++++||.++..+|.++.. .+.++--|.. +|+-|++.++|..|++++++.|+.
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~ 81 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEY 81 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEE
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeec
Confidence 466777775 77888999999999999999988864 3567777766 467799899999999999999988
Q ss_pred EEecCCCCCCCCCCCCCCCCCccccccccccchhccccccc-cCCCC
Q 004840 88 VVRQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVP 133 (728)
Q Consensus 88 VlR~p~s~sss~~qIfVltGkTitl~V~pSdTVesLK~kIQ-~EGIP 133 (728)
..+.. ...|..++|....+.|+...++.+|=..|- +.|+.
T Consensus 82 ~~~~~------~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~ 122 (371)
T 3ivf_A 82 RKKQR------PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGIT 122 (371)
T ss_dssp EECEE------EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCS
T ss_pred cCcee------EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCC
Confidence 75432 122333788888999999999888777666 66664
No 152
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.82 E-value=0.00049 Score=63.22 Aligned_cols=39 Identities=5% Similarity=0.012 Sum_probs=34.7
Q ss_pred CCCCccccccccccchhccccccc-------cCCC--CchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-------GDGV--PSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-------~EGI--PpDQQRLIFAv 143 (728)
++|++++++|++++||++||++|+ ++|+ ++++|||||++
T Consensus 24 l~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~G 71 (116)
T 1wgh_A 24 VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQG 71 (116)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETT
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECC
Confidence 578999999999999999999999 2465 69999999986
No 153
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=95.80 E-value=0.00024 Score=64.40 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=32.9
Q ss_pred CCccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 107 GkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
..+++++|++++||++||++|+ ++|||+++|||+|+
T Consensus 36 ~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~g 72 (105)
T 4dbg_A 36 TVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIG 72 (105)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEecc
Confidence 4688999999999999999999 99999999998654
No 154
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.80 E-value=0.00053 Score=59.03 Aligned_cols=39 Identities=5% Similarity=-0.135 Sum_probs=32.5
Q ss_pred CCCC--ccccccccccchhccccccc-cC--CCCchhHHHHHHh
Q 004840 105 GTSR--SHGSHVAPSVVIETFNLPDR-GD--GVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGk--Titl~V~pSdTVesLK~kIQ-~E--GIPpDQQRLIFAv 143 (728)
.+++ .+.++|.+++||.+||.+|+ .. |+|+++|||+|+.
T Consensus 15 ~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~G 58 (93)
T 1wgd_A 15 PNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSG 58 (93)
T ss_dssp SSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETT
T ss_pred CCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECC
Confidence 3455 45667779999999999999 77 9999999999863
No 155
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=95.76 E-value=0.0004 Score=57.74 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=35.7
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
..++++.++|++++||.+||.+|+ ..|+|++.|||+|..
T Consensus 11 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g 50 (85)
T 3n3k_B 11 LMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 50 (85)
T ss_dssp GGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETB
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECC
Confidence 467888999999999999999999 999999999999864
No 156
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.75 E-value=0.00038 Score=60.39 Aligned_cols=39 Identities=10% Similarity=0.149 Sum_probs=35.5
Q ss_pred CCCCccccccccccchhccccccc-c---CCCCchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-G---DGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~---EGIPpDQQRLIFAv 143 (728)
.+|+.+.++|++++||++||.+|+ . +|+|+++|||+|+.
T Consensus 8 ~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~G 50 (95)
T 1uel_A 8 LQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAG 50 (95)
T ss_dssp TTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETT
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECC
Confidence 568889999999999999999999 6 89999999999864
No 157
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=95.74 E-value=0.00029 Score=61.10 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=38.7
Q ss_pred CCCCCCCCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 99 GTHNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 99 ~~qIfVltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
.|++++-+|+++.++|++++||++||.+|+ +.|+|+++|||+|+.
T Consensus 19 ~m~I~Vk~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G 64 (93)
T 2l7r_A 19 SMQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAG 64 (93)
T ss_dssp -CEEEEESSSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETT
T ss_pred cEEEEEECCCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECC
Confidence 466666348888999999999999999999 999999999998763
No 158
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=95.74 E-value=0.00031 Score=56.87 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=35.2
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
..|+++.++|++++||++||.+|+ ..|+|++.|+|+|+
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 1ndd_A 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 468888999999999999999999 99999999999875
No 159
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=95.72 E-value=0.00075 Score=59.55 Aligned_cols=37 Identities=5% Similarity=-0.021 Sum_probs=33.7
Q ss_pred CCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 107 GkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
++.+.+.|.+++||++||.+|+ ++|||+++|||+|..
T Consensus 27 ~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~ 64 (95)
T 2kjr_A 27 AVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFK 64 (95)
T ss_dssp CEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEE
T ss_pred ceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEec
Confidence 3578899999999999999999 999999999999863
No 160
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.69 E-value=0.00043 Score=57.04 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=35.0
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
..|+.+.++|++++||++||.+|+ ..|+|++.|||+|.
T Consensus 15 ~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 53 (81)
T 2dzi_A 15 LQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK 53 (81)
T ss_dssp TTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 467888899999999999999999 99999999999885
No 161
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=95.55 E-value=0.00058 Score=60.78 Aligned_cols=39 Identities=5% Similarity=-0.048 Sum_probs=32.2
Q ss_pred CCCC--ccccccccccchhccccccc-c-CCCCc-hhHHHHHHh
Q 004840 105 GTSR--SHGSHVAPSVVIETFNLPDR-G-DGVPS-EISQIVSAV 143 (728)
Q Consensus 105 ltGk--Titl~V~pSdTVesLK~kIQ-~-EGIPp-DQQRLIFAv 143 (728)
++++ +++++|++++||.+||.+|+ + +|+|+ ++|||||++
T Consensus 31 ~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~G 74 (99)
T 2kdb_A 31 PNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSG 74 (99)
T ss_dssp TTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETT
T ss_pred CCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECC
Confidence 3555 56888999999999999999 4 66665 999999874
No 162
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.54 E-value=0.13 Score=46.07 Aligned_cols=75 Identities=15% Similarity=0.180 Sum_probs=62.4
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC--CccccccccccCCcEEEEEEec
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK--DDQLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--F~GKvLk--Dd~TLsdYGIkdGsTLhLVlR~ 91 (728)
....+|.||..+|+.+.-.+..++||.+|..-|..+ +..+...+|+ |-.|.|. .+++|.++||.+..+|+|..+.
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~~ 99 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEKE 99 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEECC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeCC
Confidence 457899999999999998999999999999999865 5556777786 5678885 4689999999999888776543
No 163
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.53 E-value=0.0004 Score=60.95 Aligned_cols=38 Identities=11% Similarity=0.033 Sum_probs=34.4
Q ss_pred CCCcc-ccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 106 TSRSH-GSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 106 tGkTi-tl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
.++++ .++|++++||.+||.+|+ ..|||+++|||+|..
T Consensus 15 ~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~G 54 (96)
T 1wgg_A 15 GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKG 54 (96)
T ss_dssp TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETT
T ss_pred CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECC
Confidence 56788 599999999999999999 999999999999753
No 164
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=95.43 E-value=0.00054 Score=65.95 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=36.7
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
.+|+++.++|++++||.+||.+|+ ++|+|+++|||+|+.
T Consensus 8 ~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G 47 (169)
T 3l0w_B 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG 47 (169)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECC
Confidence 678999999999999999999999 999999999999875
No 165
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.37 E-value=0.0006 Score=59.50 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=34.6
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
..++++.++|++++||++||.+|+ ..|||+++|||+|.
T Consensus 24 ~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~ 62 (95)
T 1v86_A 24 WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYK 62 (95)
T ss_dssp ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSS
T ss_pred ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 357788899999999999999999 99999999999864
No 166
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.36 E-value=0.00073 Score=63.11 Aligned_cols=39 Identities=10% Similarity=0.124 Sum_probs=35.2
Q ss_pred CCCCcc-ccccccccchhcccccc-----c-cCCCCc--hhHHHHHHh
Q 004840 105 GTSRSH-GSHVAPSVVIETFNLPD-----R-GDGVPS--EISQIVSAV 143 (728)
Q Consensus 105 ltGkTi-tl~V~pSdTVesLK~kI-----Q-~EGIPp--DQQRLIFAv 143 (728)
.+|+.+ .+++++++||++||++| + ++|||+ ++|||||++
T Consensus 24 ~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~G 71 (126)
T 1se9_A 24 TDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAG 71 (126)
T ss_dssp TTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETT
T ss_pred CCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECC
Confidence 578777 69999999999999999 7 899996 899999986
No 167
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=95.26 E-value=0.0021 Score=59.74 Aligned_cols=39 Identities=5% Similarity=0.012 Sum_probs=35.0
Q ss_pred CCCCccccccccccchhccccccc-------cCCC--CchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-------GDGV--PSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-------~EGI--PpDQQRLIFAv 143 (728)
++|++++++|++++||++||++|+ ++|+ ++++|||||++
T Consensus 25 l~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~G 72 (125)
T 2gow_A 25 VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQG 72 (125)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSS
T ss_pred CCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECC
Confidence 578999999999999999999999 3688 49999999986
No 168
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=95.22 E-value=0.00082 Score=58.24 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=35.7
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
..|+++.++|++++||++||.+|+ ..|+|++.|+|+|+.
T Consensus 8 ~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~G 47 (98)
T 1yx5_B 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 47 (98)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETT
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECC
Confidence 467888999999999999999999 999999999998863
No 169
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.21 E-value=0.00077 Score=60.12 Aligned_cols=37 Identities=8% Similarity=0.038 Sum_probs=34.4
Q ss_pred CCCcccccccc-ccchhccccccc-cCCCCchhHHHHHH
Q 004840 106 TSRSHGSHVAP-SVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 106 tGkTitl~V~p-SdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
+|+.+.++|.+ ++||++||.+|+ ..|||+++|+|+|+
T Consensus 39 ~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~ 77 (111)
T 1we6_A 39 DGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGK 77 (111)
T ss_dssp SSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECS
T ss_pred CCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 57888899998 999999999999 99999999999885
No 170
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.00084 Score=60.59 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=38.6
Q ss_pred CCCCC--CCCCccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 100 ~qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
.+|++ .+|+++.++|++++||++||.+|+ ..|+|+++|||+|+
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 55 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA 55 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 44444 789999999999999999999999 99999999999886
No 171
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.15 E-value=0.0013 Score=57.96 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=34.6
Q ss_pred CCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 106 tGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
.++++.++|++++||++||.+|+ +.|||+++|||+|..
T Consensus 20 ~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~g 58 (102)
T 1v5o_A 20 TEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYME 58 (102)
T ss_dssp CCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECC
Confidence 34788899999999999999999 999999999998864
No 172
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=95.15 E-value=0.00079 Score=66.51 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=39.1
Q ss_pred CCCCC--CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 100 ~qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
|++++ .+|+++.++|++++||.+||.+|+ .+|||+++|+|+|+.
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~G 152 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 152 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETT
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECC
Confidence 45555 678999999999999999999999 999999999999864
No 173
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=95.10 E-value=0.00068 Score=54.80 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=35.0
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
..|+.+.++|++++||++||.+|+ ..|+|++.|+|+|.
T Consensus 8 ~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 3a9j_A 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 467888899999999999999999 99999999999885
No 174
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=95.08 E-value=0.00031 Score=62.77 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=35.0
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
..|+.+.++|++++||.+||.+|+ ..|+|++.|||+|.
T Consensus 43 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 81 (111)
T 2ojr_A 43 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEET
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEEC
Confidence 467888899999999999999999 99999999999875
No 175
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=95.07 E-value=0.0014 Score=56.84 Aligned_cols=37 Identities=16% Similarity=0.038 Sum_probs=31.9
Q ss_pred CCCccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 106 tGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
..+..-..+++++||++||.+|+ ++|||+++|||+|.
T Consensus 13 ~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 13 RMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp SCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred CCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 33445678899999999999999 99999999999863
No 176
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=95.06 E-value=0.00069 Score=60.72 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=36.0
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
..|+++.+.|.+++||.+||.+|+ +.|+|++.|||+|..
T Consensus 43 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G 82 (111)
T 3vdz_A 43 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 82 (111)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECC
Confidence 478889999999999999999999 999999999999864
No 177
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=95.04 E-value=0.00096 Score=59.21 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=33.3
Q ss_pred CCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 107 GkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
.+.+.+.|.+++||++||.+|+ ++|||+++|||+|..
T Consensus 26 ~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g 63 (97)
T 2kj6_A 26 SFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYD 63 (97)
T ss_dssp CCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEEC
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEec
Confidence 3467899999999999999999 999999999998853
No 178
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.01 E-value=0.00085 Score=57.84 Aligned_cols=37 Identities=8% Similarity=-0.030 Sum_probs=34.3
Q ss_pred CCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 107 GkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
++.+.++|++++||++||.+|+ ..|+|+++|||+|..
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~G 63 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTG 63 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETT
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECC
Confidence 7788899999999999999999 999999999998863
No 179
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=94.91 E-value=0.069 Score=49.39 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=58.2
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHh-CCCCCCeEEE--eCCeecCC-ccccccccccCCcEEE
Q 004840 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVT-GVLSEQQRLI--CRGKVLKD-DQLLSAYHVEDGHTLH 86 (728)
Q Consensus 15 s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeekt-GIPpeqQRLI--F~GKvLkD-d~TLsdYGIkdGsTLh 86 (728)
.....+|.||..+|+.+.-.+..++||.+|++.|.... +.......|+ |-.|.|.| +++|.++|+.+..+|.
T Consensus 49 ~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 49 AEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp TSCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 34568999999999999999999999999999998863 3445667776 56788865 5899999998855443
No 180
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.41 E-value=0.00075 Score=61.00 Aligned_cols=38 Identities=5% Similarity=-0.159 Sum_probs=32.8
Q ss_pred CCCCC--CCCCccccccccccchhccccccc-cCCCCchhH
Q 004840 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEIS 137 (728)
Q Consensus 100 ~qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQ 137 (728)
|.|++ ++|+++.++|.+++||++||++|+ ++|+|++.|
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q 48 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQERE 48 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccc
Confidence 45555 789999999999999999999999 999988544
No 181
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=94.38 E-value=0.0019 Score=57.99 Aligned_cols=58 Identities=7% Similarity=0.062 Sum_probs=45.6
Q ss_pred cEEEEEEecCCCCCCCCCCCCCCCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 83 HTLHMVVRQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 83 sTLhLVlR~p~s~sss~~qIfVltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
..|.|.++.+...... .+-++|+++.++|++++||.+||.+|+ ..|||+++|||+|..
T Consensus 24 ~~i~l~V~~p~~~~~~---~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~G 82 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKT---EWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEG 82 (115)
T ss_dssp SCEEEEEEECCCSSSC---SSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETT
T ss_pred CCEEEEEEcCCCcccc---ccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECC
Confidence 4677777766432111 122689999999999999999999999 999999999999863
No 182
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=94.28 E-value=0.0031 Score=55.60 Aligned_cols=37 Identities=8% Similarity=-0.032 Sum_probs=33.9
Q ss_pred CCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 107 GkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
|+.+.++|++++||++||.+|+ ..|+|++.|||+|..
T Consensus 34 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G 71 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAG 71 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECC
Confidence 6678899999999999999999 999999999998863
No 183
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.21 E-value=0.25 Score=45.38 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=52.9
Q ss_pred CCcEEEEEEeCC--CcEEEEEecCCCCHHHHHHHHHHH--hCCC------CCCeEEEe----CCeecCCc----------
Q 004840 16 ETTIEIKIKTLD--SQTYTLRVDKQVPVPALKEQIASV--TGVL------SEQQRLIC----RGKVLKDD---------- 71 (728)
Q Consensus 16 ~ssMqItVKtLd--GKt~tLeVdpsdTV~dLKekIeek--tGIP------peqQRLIF----~GKvLkDd---------- 71 (728)
..+|.|+|-..+ +..+.+.|-.++||.++|+||-+. .++| +++..|-+ .|+.|.|.
T Consensus 9 ~~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w 88 (111)
T 4e71_A 9 YAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRW 88 (111)
T ss_dssp CCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred eEEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcc
Confidence 356777776543 456778888999999999999654 2332 35666765 24666542
Q ss_pred ---cccccccccCCcEEEEEEe
Q 004840 72 ---QLLSAYHVEDGHTLHMVVR 90 (728)
Q Consensus 72 ---~TLsdYGIkdGsTLhLVlR 90 (728)
.||..|+|.||++|-|+-+
T Consensus 89 krLNTL~HY~V~dgatl~l~~~ 110 (111)
T 4e71_A 89 KRVNTLMHYNVRDGATLILSKV 110 (111)
T ss_dssp CCCCBHHHHTCCTTCEEEEEEC
T ss_pred eEecchhhcCCCCCCEEEEEeC
Confidence 3789999999999988754
No 184
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.20 E-value=0.0022 Score=54.93 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=32.9
Q ss_pred CCCccccccccc-----cchhccccccc-cCCCCchhHHHHHH
Q 004840 106 TSRSHGSHVAPS-----VVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 106 tGkTitl~V~pS-----dTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
.++.+.++|.++ .||.+||.+|+ ..|+|+++|||+|.
T Consensus 15 ~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 57 (92)
T 1wxv_A 15 SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK 57 (92)
T ss_dssp SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 466778899885 99999999999 99999999999875
No 185
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.15 E-value=0.0024 Score=55.40 Aligned_cols=38 Identities=11% Similarity=-0.037 Sum_probs=32.2
Q ss_pred CCCCcc--cc-ccccccchhccccccc--cCCCCchhHHHHHH
Q 004840 105 GTSRSH--GS-HVAPSVVIETFNLPDR--GDGVPSEISQIVSA 142 (728)
Q Consensus 105 ltGkTi--tl-~V~pSdTVesLK~kIQ--~EGIPpDQQRLIFA 142 (728)
..|+.+ .+ +|.+++||++||.+|+ ++|+|+++|||+|.
T Consensus 18 ~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~ 60 (88)
T 2dzj_A 18 AKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLD 60 (88)
T ss_dssp SSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESS
T ss_pred CCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEec
Confidence 455554 47 8999999999999999 48999999999765
No 186
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=94.10 E-value=0.0015 Score=57.65 Aligned_cols=37 Identities=8% Similarity=-0.006 Sum_probs=33.0
Q ss_pred CCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 106 tGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
.++ +.++|++++||++||.+|+ ..|+|++.|||+|..
T Consensus 31 ~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G 68 (100)
T 1yqb_A 31 KDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAG 68 (100)
T ss_dssp SCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred CCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECC
Confidence 454 6789999999999999999 999999999998863
No 187
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=94.06 E-value=0.0018 Score=52.78 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=34.4
Q ss_pred CCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 106 tGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
.|+.+.++|++++||++||.+|+ ..|+|++.|||+|..
T Consensus 12 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~g 50 (77)
T 2bwf_A 12 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSG 50 (77)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECC
Confidence 56778899999999999999999 999999999998763
No 188
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=93.97 E-value=0.0019 Score=55.14 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=35.1
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
.+|+++.++|++++||++||.+|+ ..|+|++.|||+|.
T Consensus 19 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 57 (85)
T 2kd0_A 19 FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFK 57 (85)
T ss_dssp ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEET
T ss_pred ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 467888899999999999999999 99999999999875
No 189
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.87 E-value=0.0043 Score=54.75 Aligned_cols=37 Identities=8% Similarity=-0.006 Sum_probs=32.9
Q ss_pred CCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 106 tGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
.++ +.++|++++||++||.+|+ ..||+++.|||+|..
T Consensus 26 ~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G 63 (106)
T 1wx7_A 26 KDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAG 63 (106)
T ss_dssp SCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETT
T ss_pred CCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECC
Confidence 444 6789999999999999999 999999999998864
No 190
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=93.81 E-value=0.2 Score=47.57 Aligned_cols=79 Identities=20% Similarity=0.247 Sum_probs=53.9
Q ss_pred CCCCcEEEEEEeCC------CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEe----CCee-cCCc---
Q 004840 14 SSETTIEIKIKTLD------SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLIC----RGKV-LKDD--- 71 (728)
Q Consensus 14 ~s~ssMqItVKtLd------GKt~tLeVdpsdTV~dLKekIeekt--GIP------peqQRLIF----~GKv-LkDd--- 71 (728)
-...+|.|+|-... ...+.+.|-.+|||.++|+||-+.. ++| +++.-|-+ .|+. |.|.
T Consensus 20 vey~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~t 99 (138)
T 2r2o_A 20 VEYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVT 99 (138)
T ss_dssp --CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTT
T ss_pred ceeEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCc
Confidence 34467888876653 2568899999999999999997652 343 34555544 2443 5542
Q ss_pred ----------cccccccccCCcEEEEEEecC
Q 004840 72 ----------QLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 72 ----------~TLsdYGIkdGsTLhLVlR~p 92 (728)
.||+.|+|.+|.+|-|+.+..
T Consensus 100 S~~~~~wkrLNTL~HY~V~Dga~l~l~~~~~ 130 (138)
T 2r2o_A 100 SEVQGLWRRLNTLQHYKVPDGATVALVPCLT 130 (138)
T ss_dssp CCEETTEEECCBHHHHTCCTTCEEEEEEC--
T ss_pred ccccCCceeecchhccCCCCCCEEEEEECCC
Confidence 389999999999999987754
No 191
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.67 E-value=0.0037 Score=54.32 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=31.7
Q ss_pred ccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 109 Titl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
.+.++|.+++||++||.+|+ ++|||+++|||+|.
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 56789999999999999999 99999999999885
No 192
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.63 E-value=0.002 Score=59.27 Aligned_cols=37 Identities=8% Similarity=-0.016 Sum_probs=34.3
Q ss_pred CCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 107 GkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
++.+.++|++++||.+||.+|+ +.|||+++|||+|..
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G 78 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAG 78 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETT
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECC
Confidence 7778899999999999999999 999999999999863
No 193
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=93.04 E-value=0.0054 Score=54.64 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=32.1
Q ss_pred CCCCccccccc-cccchhccccccc-cCCCCchhHHHHHH
Q 004840 105 GTSRSHGSHVA-PSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 105 ltGkTitl~V~-pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
.+|+. .++|+ +++||.+||.+|+ +.|||+++|+|+|.
T Consensus 15 ~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~ 53 (107)
T 1wf9_A 15 RDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTN 53 (107)
T ss_dssp SSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSS
T ss_pred CCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEEC
Confidence 45654 68899 9999999999999 99999999999654
No 194
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=92.82 E-value=0.5 Score=47.45 Aligned_cols=75 Identities=13% Similarity=0.209 Sum_probs=57.8
Q ss_pred EEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEe-C----CeecCC-ccccccccccCCcEEEEEE
Q 004840 19 IEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLIC-R----GKVLKD-DQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 19 MqItVKtLdG--Kt~tLeVdpsdTV~dLKekIeektGIPpe-qQRLIF-~----GKvLkD-d~TLsdYGIkdGsTLhLVl 89 (728)
+.|++..... ..+++.++..+||.+||+++++.++++.+ +.||-. . -..|.| +.+|.+++|.++..|.|-+
T Consensus 140 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~ 219 (231)
T 3jyu_A 140 LELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEP 219 (231)
T ss_dssp EEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEE
T ss_pred ceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEE
Confidence 4555554332 23557789999999999999999999997 688853 2 245665 5899999999999999988
Q ss_pred ecCC
Q 004840 90 RQPV 93 (728)
Q Consensus 90 R~p~ 93 (728)
+...
T Consensus 220 r~~d 223 (231)
T 3jyu_A 220 QNED 223 (231)
T ss_dssp CCTT
T ss_pred ecCC
Confidence 8653
No 195
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.61 E-value=0.0073 Score=53.61 Aligned_cols=36 Identities=8% Similarity=-0.090 Sum_probs=30.4
Q ss_pred Cccccc--------cccc-cchhccccccc-cC--CCCchh-HHHHHHh
Q 004840 108 RSHGSH--------VAPS-VVIETFNLPDR-GD--GVPSEI-SQIVSAV 143 (728)
Q Consensus 108 kTitl~--------V~pS-dTVesLK~kIQ-~E--GIPpDQ-QRLIFAv 143 (728)
+.+.++ |+++ +||.+||.+|+ .. |+|++. |||+|..
T Consensus 26 ~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~G 74 (107)
T 1x1m_A 26 PKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCG 74 (107)
T ss_dssp CCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETT
T ss_pred cEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECC
Confidence 566677 5555 99999999999 88 999999 9998864
No 196
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=92.57 E-value=0.0077 Score=63.58 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=39.9
Q ss_pred CCCCCCC--CCCCccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 98 DGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 98 s~~qIfV--ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
..|+|++ +.|+++.++|++++||++||.+|+ ..|||+++|||+|+
T Consensus 232 ~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~ 279 (307)
T 3ai5_A 232 GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 279 (307)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeC
Confidence 4466666 678999999999999999999999 99999999999886
No 197
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.45 E-value=0.006 Score=52.48 Aligned_cols=36 Identities=8% Similarity=0.017 Sum_probs=31.8
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
..|+.+.++|+++++|++||.+|+ .+ +++|||+|..
T Consensus 15 ~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~G 51 (95)
T 1wia_A 15 LNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQG 51 (95)
T ss_dssp TTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETT
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECC
Confidence 568888999999999999999999 55 8999999863
No 198
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=92.45 E-value=0.38 Score=47.87 Aligned_cols=74 Identities=18% Similarity=0.269 Sum_probs=57.2
Q ss_pred EEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEE--e-CC--eecCC-ccccccccccCCcEEEEEE
Q 004840 19 IEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLI--C-RG--KVLKD-DQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 19 MqItVKtLdG--Kt~tLeVdpsdTV~dLKekIeektGIPpe-qQRLI--F-~G--KvLkD-d~TLsdYGIkdGsTLhLVl 89 (728)
+.|++..... ..+++.++..+||.+|++++++.++++.+ +.||- | .+ ..|+| +++|.+++|.++..|.|-+
T Consensus 128 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~ 207 (217)
T 4a3p_A 128 TELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQ 207 (217)
T ss_dssp EEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEE
T ss_pred cEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEE
Confidence 4455554332 23568889999999999999999999987 68884 3 33 34555 5799999999999999988
Q ss_pred ecC
Q 004840 90 RQP 92 (728)
Q Consensus 90 R~p 92 (728)
|..
T Consensus 208 r~~ 210 (217)
T 4a3p_A 208 KNE 210 (217)
T ss_dssp CCC
T ss_pred ecC
Confidence 864
No 199
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=92.42 E-value=0.0047 Score=52.64 Aligned_cols=37 Identities=5% Similarity=0.031 Sum_probs=31.4
Q ss_pred CCCCccccc-cccccchhccccccc-cCCCCchhHHHHHH
Q 004840 105 GTSRSHGSH-VAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 105 ltGkTitl~-V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
.+|+.+ +. +++++||++||..|+ +.|||+++|+|+|+
T Consensus 8 ~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~ 46 (86)
T 2kzr_A 8 KGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVG 46 (86)
T ss_dssp TTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEES
T ss_pred CCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeC
Confidence 466544 56 999999999999999 99999999999653
No 200
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=92.08 E-value=0.0066 Score=55.35 Aligned_cols=35 Identities=6% Similarity=-0.041 Sum_probs=31.9
Q ss_pred ccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 109 Titl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
.+.+.+.+++||++||.+|+ ..|||+++|||+|..
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g 54 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFD 54 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEEC
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEec
Confidence 46789999999999999999 999999999998853
No 201
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=91.53 E-value=0.01 Score=63.89 Aligned_cols=44 Identities=9% Similarity=0.082 Sum_probs=37.8
Q ss_pred CCCCC--CCCCccccccccccchhcccccccc----CCCCchhHHHHHHh
Q 004840 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDRG----DGVPSEISQIVSAV 143 (728)
Q Consensus 100 ~qIfV--ltGkTitl~V~pSdTVesLK~kIQ~----EGIPpDQQRLIFAv 143 (728)
|.|++ ..|+++.++|++++||.+||.+|+. +|||+++|||||..
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~G 57 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAG 57 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSS
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECC
Confidence 44444 6789999999999999999999992 68999999999874
No 202
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=91.26 E-value=0.0082 Score=53.60 Aligned_cols=39 Identities=8% Similarity=-0.036 Sum_probs=35.4
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
...+.+.+.|.+.++|..||+.|+ ++|||+++|+|+|..
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg 60 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEG 60 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 356678899999999999999999 999999999998876
No 203
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=90.11 E-value=1.8 Score=37.68 Aligned_cols=68 Identities=13% Similarity=0.240 Sum_probs=48.9
Q ss_pred CCcEEEEEEeCC------C-cEEEEEecCCCCHHHHHHHHHHHhC-C----------CCCCeEEEeCCeecCCccccccc
Q 004840 16 ETTIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-V----------LSEQQRLICRGKVLKDDQLLSAY 77 (728)
Q Consensus 16 ~ssMqItVKtLd------G-Kt~tLeVdpsdTV~dLKekIeektG-I----------PpeqQRLIF~GKvLkDd~TLsdY 77 (728)
..+|+|+||+.. | +...+++....||.+|++.+..++. + ......+..+|+.... ++
T Consensus 7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~ 81 (98)
T 1vjk_A 7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DE 81 (98)
T ss_dssp --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TC
T ss_pred cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CC
Confidence 357999999885 3 4677888788999999999987642 1 1133456677776652 67
Q ss_pred cccCCcEEEEE
Q 004840 78 HVEDGHTLHMV 88 (728)
Q Consensus 78 GIkdGsTLhLV 88 (728)
-|++|+.|.++
T Consensus 82 ~L~dGDeV~i~ 92 (98)
T 1vjk_A 82 ELKDGDVVGVF 92 (98)
T ss_dssp BCCTTCEEEEE
T ss_pred CCCCCCEEEEE
Confidence 78999998886
No 204
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=89.89 E-value=1.4 Score=41.28 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=51.3
Q ss_pred cEEEEEEe--CCCcEEEEEecCCCCHHHHHHHHHHH--hCCC------CCCeEEEe-C---Cee-cCC---------c--
Q 004840 18 TIEIKIKT--LDSQTYTLRVDKQVPVPALKEQIASV--TGVL------SEQQRLIC-R---GKV-LKD---------D-- 71 (728)
Q Consensus 18 sMqItVKt--LdGKt~tLeVdpsdTV~dLKekIeek--tGIP------peqQRLIF-~---GKv-LkD---------d-- 71 (728)
.+.|+|-. .++..+.+.|-.+|||.++|+||-+. .++| +++..|-+ . |+. |.| .
T Consensus 4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~k 83 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRK 83 (127)
T ss_dssp EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEE
T ss_pred EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCcee
Confidence 45555543 23456778888999999999999654 2333 36677765 2 333 544 1
Q ss_pred --cccccccccCCcEEEEEEec
Q 004840 72 --QLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 72 --~TLsdYGIkdGsTLhLVlR~ 91 (728)
.||..|+|.||.+|-|+.+.
T Consensus 84 rLNTL~HY~V~dgatv~l~~~~ 105 (127)
T 3h6n_A 84 KLNTLAHYKIPEGASLAMSLID 105 (127)
T ss_dssp CCCBTTTTTCCTTCEEEEEECC
T ss_pred EeccccccCCCCCCEEEEEEcc
Confidence 37899999999999998664
No 205
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=89.58 E-value=2.1 Score=35.24 Aligned_cols=62 Identities=11% Similarity=0.205 Sum_probs=47.8
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 18 sMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
.|+|+|.-. .....+++....||.+|.+++ +++++...+..+|+.+..+. -+++|+.|.++-
T Consensus 4 ~m~i~vNg~-~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 4 GMKFTVITD-DGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp CEEEEEEET-TEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred eEEEEEeCc-cCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 488888874 344567888889999999876 56677777889999886554 688999998874
No 206
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=88.86 E-value=1.3 Score=41.10 Aligned_cols=76 Identities=25% Similarity=0.401 Sum_probs=52.4
Q ss_pred CCcEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHH--hCCC------CCCeEEEe-CC---e-ecCC---------
Q 004840 16 ETTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASV--TGVL------SEQQRLIC-RG---K-VLKD--------- 70 (728)
Q Consensus 16 ~ssMqItVKtLd---GKt~tLeVdpsdTV~dLKekIeek--tGIP------peqQRLIF-~G---K-vLkD--------- 70 (728)
..+|.|+|-... ...+.+.|-.++||.++|+||-+. .++| +++..|-+ .| + .|.|
T Consensus 11 ~~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~ 90 (117)
T 4e74_A 11 YKTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEN 90 (117)
T ss_dssp CCEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC--
T ss_pred cEEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecC
Confidence 356777775543 345778888999999999999654 2333 35666655 23 3 2443
Q ss_pred c----cccccccccCCcEEEEEEec
Q 004840 71 D----QLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 71 d----~TLsdYGIkdGsTLhLVlR~ 91 (728)
. .||++|+|.+|.+|-|+-|.
T Consensus 91 ~wkrLNTL~HY~V~dgatl~l~~~~ 115 (117)
T 4e74_A 91 DWKRLNTLAHYQVPDGSVVALVSKQ 115 (117)
T ss_dssp -CCCCCBHHHHTCCTTCEEEEEECC
T ss_pred cceEeccccccCCCCCCEEEEEeCC
Confidence 1 36899999999999998764
No 207
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=88.60 E-value=0.95 Score=39.60 Aligned_cols=49 Identities=12% Similarity=0.257 Sum_probs=43.2
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK 66 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GK 66 (728)
...|+|+|.+. -++.|+|.++.+..+|.++|.++.++++++..|.|+..
T Consensus 3 ~~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 3 HMAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp SSCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred CCcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 34588888885 68889999999999999999999999999999999763
No 208
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=88.54 E-value=0.025 Score=59.68 Aligned_cols=35 Identities=9% Similarity=0.072 Sum_probs=33.6
Q ss_pred CCCccccccccccchhccccccc-cCCCCchhHHHH
Q 004840 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIV 140 (728)
Q Consensus 106 tGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLI 140 (728)
+|+++.++|++++||++||.+|+ ++|||+++|+|+
T Consensus 13 ~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi 48 (320)
T 3shq_A 13 SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLL 48 (320)
T ss_dssp TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEET
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEe
Confidence 68889999999999999999999 999999999999
No 209
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=88.23 E-value=0.94 Score=38.23 Aligned_cols=60 Identities=12% Similarity=0.283 Sum_probs=46.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEE
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLV 88 (728)
|+|+||....+...+++....||.+|-+ +.+++++.-.+..+|+.+..+. +.+|+.|.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 7888888755566689999999999875 5789998887888999886555 2348888775
No 210
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=87.25 E-value=3.7 Score=38.49 Aligned_cols=74 Identities=19% Similarity=0.279 Sum_probs=49.7
Q ss_pred CCcEEEEEEe---CC------CcEEEEEecCCCCHHHHHHHHHHH----hCCCC----CCeEEEe-CC---eecC-----
Q 004840 16 ETTIEIKIKT---LD------SQTYTLRVDKQVPVPALKEQIASV----TGVLS----EQQRLIC-RG---KVLK----- 69 (728)
Q Consensus 16 ~ssMqItVKt---Ld------GKt~tLeVdpsdTV~dLKekIeek----tGIPp----eqQRLIF-~G---KvLk----- 69 (728)
-.++.|+|-. .. ...+.+.|-.+|||.++|+||-+. .++|. ++..|-+ .| ..|.
T Consensus 17 y~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~t 96 (126)
T 3kuz_A 17 QGTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSS 96 (126)
T ss_dssp CCEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTT
T ss_pred eEEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCc
Confidence 4567777776 32 246888898999999999999542 36654 4455543 12 2232
Q ss_pred -----Cc----cccccccccCCcEEEEEE
Q 004840 70 -----DD----QLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 70 -----Dd----~TLsdYGIkdGsTLhLVl 89 (728)
+. .||..|+|.+|++|-|+.
T Consensus 97 S~~~e~~wkrLNTL~HY~V~Dgatlal~k 125 (126)
T 3kuz_A 97 SVILEDGITKLNTIGHYEISNGSTIKVFK 125 (126)
T ss_dssp CCBCTTSCBCCCBTGGGTCCTTCEEEEEE
T ss_pred ceEecCCeeEeccccccCCCCCCEEEEee
Confidence 22 368899999999998764
No 211
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=87.21 E-value=2.5 Score=37.29 Aligned_cols=51 Identities=8% Similarity=0.106 Sum_probs=42.5
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEeCCe
Q 004840 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLICRGK 66 (728)
Q Consensus 15 s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeq-QRLIF~GK 66 (728)
+...|+|++.. +|..+.+.|+++.+..+|.++|.+.+++..++ ..|.|...
T Consensus 3 ~~~~vkvK~~~-~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 3 LGSQVRVKAYY-RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp CSSCEEEEEES-SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred CCCeEEEEEEe-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 34568888888 47889999999999999999999999987655 67778764
No 212
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=84.76 E-value=4.2 Score=46.80 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=53.4
Q ss_pred CCCCcEEEEEEeCCC------cEEEEEecCCCCHHHHHHHHHHH--hCCC------CCCeEEEe----CCe-ecCCc---
Q 004840 14 SSETTIEIKIKTLDS------QTYTLRVDKQVPVPALKEQIASV--TGVL------SEQQRLIC----RGK-VLKDD--- 71 (728)
Q Consensus 14 ~s~ssMqItVKtLdG------Kt~tLeVdpsdTV~dLKekIeek--tGIP------peqQRLIF----~GK-vLkDd--- 71 (728)
-....|.|+|-..++ ..+.+.|-.+|||.++|+||-+. .++| +++..|-+ .|+ .|.|.
T Consensus 253 ie~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~t 332 (644)
T 3hm6_X 253 VEYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVT 332 (644)
T ss_dssp CCCCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTT
T ss_pred ccceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCcc
Confidence 344677888765432 45778898999999999999753 2333 35566654 233 35442
Q ss_pred ----------cccccccccCCcEEEEEEecC
Q 004840 72 ----------QLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 72 ----------~TLsdYGIkdGsTLhLVlR~p 92 (728)
.||++|+|.||++|-|+-+..
T Consensus 333 s~~~~~wkrLNTL~HY~V~dga~v~L~p~~~ 363 (644)
T 3hm6_X 333 SEVQGLWRRLNTLQHYKVPDGATVALVPCLT 363 (644)
T ss_dssp CCEETTEEECCBTTTTTCCTTCEEEEEEC--
T ss_pred ceecCcceeecchhhcCCCCCcEEEEEeccc
Confidence 379999999999999987653
No 213
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=82.57 E-value=2.5 Score=34.83 Aligned_cols=65 Identities=8% Similarity=0.236 Sum_probs=43.6
Q ss_pred EEEEEEeCCC-cEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCCeecCCccccccccccCCcEEEEE
Q 004840 19 IEIKIKTLDS-QTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 19 MqItVKtLdG-Kt~tLeVdpsdTV~dLKekIeektGIPp--eqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLV 88 (728)
|.|+||.... +...+++ ...||.+|++++..+.++.. ....+..+|+.+.+ .++-+++|+.|.++
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLL 68 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEE
Confidence 6688887652 1134666 56899999999986543321 34456667776432 35678999999887
No 214
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=82.04 E-value=0.12 Score=45.30 Aligned_cols=42 Identities=2% Similarity=-0.140 Sum_probs=38.1
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHhhhc
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLGS 146 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAvL~s 146 (728)
.+|+.+.+.|+++++++.||..+. +.|++++++||+|..-..
T Consensus 15 ~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l 57 (94)
T 2io1_B 15 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI 57 (94)
T ss_dssp TTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEc
Confidence 478889999999999999999999 999999999999987653
No 215
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=81.48 E-value=6.4 Score=33.17 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=40.3
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-C-----CC-----CCeEEEeCCeecCCccccccccccCCcEEEEE
Q 004840 29 QTYTLRVDKQVPVPALKEQIASVTG-V-----LS-----EQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIeektG-I-----Pp-----eqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLV 88 (728)
+...+++....||.+|++++..++. + .. ....+..+|+.... ++-+++|+.|.++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEE
Confidence 5677888878999999999987652 1 00 12466677877754 5678999999887
No 216
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.43 E-value=0.082 Score=49.05 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=34.8
Q ss_pred CCCccccccccccchhccccccc-cCCCCchhHHHHHHh
Q 004840 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (728)
Q Consensus 106 tGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAv 143 (728)
.+..+++.++++.+|.+||+.+. ..++|+++|||+|++
T Consensus 25 ~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~G 63 (118)
T 2daf_A 25 VGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSG 63 (118)
T ss_dssp TCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETT
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECC
Confidence 46678899999999999999999 999999999999985
No 217
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=78.90 E-value=7.6 Score=39.19 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=54.3
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEe---CCe--ecCCccccccccccCCcEEEEEEec
Q 004840 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLIC---RGK--VLKDDQLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 18 sMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeq-QRLIF---~GK--vLkDd~TLsdYGIkdGsTLhLVlR~ 91 (728)
.|.|+|..+|| ++.+.|++..|+.+|-++|+++.|+...+ .=|.| +|. .|+.++.|.+.+++.+....|..|.
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~ 79 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA 79 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence 37899999998 67899999999999999999999986533 34444 332 4677778887766555555555554
Q ss_pred C
Q 004840 92 P 92 (728)
Q Consensus 92 p 92 (728)
.
T Consensus 80 k 80 (294)
T 1ef1_A 80 K 80 (294)
T ss_dssp S
T ss_pred E
Confidence 3
No 218
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=77.64 E-value=7.1 Score=39.92 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=56.5
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEe--CCe--ecCCccccccccccCCcEEEEEEe
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLIC--RGK--VLKDDQLLSAYHVEDGHTLHMVVR 90 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPp-eqQRLIF--~GK--vLkDd~TLsdYGIkdGsTLhLVlR 90 (728)
...+.+.|..+|| ++.+.|++..|+.+|-++|+.+.++.. +-.-|.| +|. .|+.++.|.+..++.+..+.|..|
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 4678999999999 788999999999999999999999865 3334544 443 377788888877655555555555
Q ss_pred c
Q 004840 91 Q 91 (728)
Q Consensus 91 ~ 91 (728)
.
T Consensus 99 ~ 99 (314)
T 1h4r_A 99 A 99 (314)
T ss_dssp E
T ss_pred E
Confidence 4
No 219
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=77.51 E-value=5.2 Score=35.39 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=53.5
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEec
Q 004840 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 31 ~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR~ 91 (728)
+.-.++-..++..||+.++.+.++..+.-.+...+..|+++++|.+-+|+-...+.+-+..
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 4456777899999999999999999999999889988999999999999888888777654
No 220
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=76.58 E-value=12 Score=43.03 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=54.4
Q ss_pred CCCCcEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHH--hCCC------CCCeEEEe----CCe-ecCCc------
Q 004840 14 SSETTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASV--TGVL------SEQQRLIC----RGK-VLKDD------ 71 (728)
Q Consensus 14 ~s~ssMqItVKtLd---GKt~tLeVdpsdTV~dLKekIeek--tGIP------peqQRLIF----~GK-vLkDd------ 71 (728)
-....|.|+|-..+ ...+.+.|-.+|||.++|+||-+. .++| +++..|-+ .|+ .|.|.
T Consensus 229 ie~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~ 308 (627)
T 3ig3_A 229 IDYKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKI 308 (627)
T ss_dssp CCCCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCE
T ss_pred ccceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccc
Confidence 34467888887554 356788998999999999999654 2332 35666654 233 34431
Q ss_pred -------cccccccccCCcEEEEEEecC
Q 004840 72 -------QLLSAYHVEDGHTLHMVVRQP 92 (728)
Q Consensus 72 -------~TLsdYGIkdGsTLhLVlR~p 92 (728)
.||.+|+|.||.+|-|+-+..
T Consensus 309 ~~~wkrLNTL~HY~V~Dga~v~L~p~~~ 336 (627)
T 3ig3_A 309 ECDWKRVNSLAHYQVTDGSLVALVPKQV 336 (627)
T ss_dssp ETTEEECCBTTTTTCCTTCEEEEEEC--
T ss_pred cCceeEecchhhcCCCCCceEEEEeccc
Confidence 378999999999999987653
No 221
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=76.46 E-value=3 Score=37.92 Aligned_cols=71 Identities=18% Similarity=0.269 Sum_probs=45.5
Q ss_pred CcEEEEEEeCC------C--cEEEEEecC---CCCHHHHHHHHHHHhCCCCCCeEEEeC-Ce------ecCCcc---cc-
Q 004840 17 TTIEIKIKTLD------S--QTYTLRVDK---QVPVPALKEQIASVTGVLSEQQRLICR-GK------VLKDDQ---LL- 74 (728)
Q Consensus 17 ssMqItVKtLd------G--Kt~tLeVdp---sdTV~dLKekIeektGIPpeqQRLIF~-GK------vLkDd~---TL- 74 (728)
.+|+|+|+... + +.+.+++.. ..||.+|.+.|.+++ +....+|+.. |+ +|-++. .|
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~ 87 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLG 87 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHC
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccC
Confidence 34999999875 2 366788873 369999999998776 2223333322 32 232222 22
Q ss_pred -ccccccCCcEEEEEE
Q 004840 75 -SAYHVEDGHTLHMVV 89 (728)
Q Consensus 75 -sdYGIkdGsTLhLVl 89 (728)
.+|.+++|+.|.++-
T Consensus 88 gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 88 ELDYQLQDQDSILFIS 103 (114)
T ss_dssp TTTCBCCSSEEEEEEE
T ss_pred CcCcCCCCCCEEEEeC
Confidence 468899999988864
No 222
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=75.80 E-value=12 Score=33.89 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=56.1
Q ss_pred cEEEEEEeCCC---cEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCC---eecCCccccccccccCCcEEEEEE
Q 004840 18 TIEIKIKTLDS---QTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRG---KVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 18 sMqItVKtLdG---Kt~tLeVdpsdTV~dLKekIeektGIPp--eqQRLIF~G---KvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
.+.|+|..++. ..++++|..+.-|.-|.-+|-++..++. .+--|-..- .+|+-..+|..|||+.+..|++.-
T Consensus 19 eL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 19 ELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 35667777554 5688999999999999999998887654 444454332 356888999999999999999875
Q ss_pred e
Q 004840 90 R 90 (728)
Q Consensus 90 R 90 (728)
.
T Consensus 99 ~ 99 (102)
T 2kmc_A 99 Q 99 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 223
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=75.41 E-value=7.6 Score=33.05 Aligned_cols=69 Identities=6% Similarity=0.052 Sum_probs=43.5
Q ss_pred EEEEEEeCC------CcEEEEEecCCCCHHHHHHHHHHHhCC------C-------CCCeEEEeCCeecCCccccccccc
Q 004840 19 IEIKIKTLD------SQTYTLRVDKQVPVPALKEQIASVTGV------L-------SEQQRLICRGKVLKDDQLLSAYHV 79 (728)
Q Consensus 19 MqItVKtLd------GKt~tLeVdpsdTV~dLKekIeektGI------P-------peqQRLIF~GKvLkDd~TLsdYGI 79 (728)
|+|+|+... |+...+++ ...||.+|++.+..++.- . .....+..+|+...+..- .++-+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCC
Confidence 667777653 33334665 457999999999877531 0 013456667776653221 25678
Q ss_pred cCCcEEEEEE
Q 004840 80 EDGHTLHMVV 89 (728)
Q Consensus 80 kdGsTLhLVl 89 (728)
++|+.|.++-
T Consensus 79 ~~gDeV~i~P 88 (93)
T 3dwg_C 79 ADGDSVTILP 88 (93)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCEEEEEC
Confidence 9999998874
No 224
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=75.21 E-value=9 Score=34.45 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=55.1
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEE------eCCeecCCcccccc----ccccCCc
Q 004840 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLI------CRGKVLKDDQLLSA----YHVEDGH 83 (728)
Q Consensus 15 s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeq-QRLI------F~GKvLkDd~TLsd----YGIkdGs 83 (728)
....+.|+|-..||...+|.|+..+|+.++-+++..|.++..+. --|+ +--+.|+|...|-+ +.+....
T Consensus 6 ~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~n 85 (100)
T 1wgr_A 6 SGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDS 85 (100)
T ss_dssp CCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCC
T ss_pred cCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCc
Confidence 34557888888999999999999999999999999998875432 2332 12367888866544 4455556
Q ss_pred EEEEEEec
Q 004840 84 TLHMVVRQ 91 (728)
Q Consensus 84 TLhLVlR~ 91 (728)
.+++..+.
T Consensus 86 r~~F~kr~ 93 (100)
T 1wgr_A 86 RFVFRKNF 93 (100)
T ss_dssp EEEECSCC
T ss_pred EEEEecch
Confidence 66664443
No 225
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=74.97 E-value=11 Score=39.51 Aligned_cols=74 Identities=23% Similarity=0.288 Sum_probs=54.7
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEeCC---------eecCCccccccccccCCcEEE
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLICRG---------KVLKDDQLLSAYHVEDGHTLH 86 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPp-eqQRLIF~G---------KvLkDd~TLsdYGIkdGsTLh 86 (728)
..+.++|..++|....+.|+...|+.+|-++|+.+.++.. +..-|.+.. +-|+.+++|.+.++....+++
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~ 163 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLL 163 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEE
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEE
Confidence 4578899999999999999999999999999999999864 444565532 234556666666655556665
Q ss_pred EEEe
Q 004840 87 MVVR 90 (728)
Q Consensus 87 LVlR 90 (728)
+.+|
T Consensus 164 frvK 167 (371)
T 3ivf_A 164 LRRK 167 (371)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 5444
No 226
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=74.23 E-value=7.1 Score=40.05 Aligned_cols=78 Identities=17% Similarity=0.111 Sum_probs=53.4
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEeC---C--eecCCccccccccccCCcEEE
Q 004840 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLICR---G--KVLKDDQLLSAYHVEDGHTLH 86 (728)
Q Consensus 13 e~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpe-qQRLIF~---G--KvLkDd~TLsdYGIkdGsTLh 86 (728)
++....|.++|..+||....+.|++..|+.+|-++|+++.|+... -.=|.|. | ..|+.++.|.+.......+++
T Consensus 12 ~~~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~ 91 (296)
T 3qij_A 12 ENLYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFT 91 (296)
T ss_dssp -----CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEE
T ss_pred CCCCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEE
Confidence 344567999999999999999999999999999999999998653 3455443 2 346777777766443334555
Q ss_pred EEEe
Q 004840 87 MVVR 90 (728)
Q Consensus 87 LVlR 90 (728)
+-++
T Consensus 92 frvk 95 (296)
T 3qij_A 92 FNVK 95 (296)
T ss_dssp EEES
T ss_pred EEEE
Confidence 5443
No 227
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=72.98 E-value=4.9 Score=35.04 Aligned_cols=64 Identities=6% Similarity=0.085 Sum_probs=42.7
Q ss_pred CCcEEEEEEeCCCcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 16 ETTIEIKIKTLDSQTYTLRVDKQ-VPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 16 ~ssMqItVKtLdGKt~tLeVdps-dTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
..+|+|+| +|+.+ ++... .||.+|.+++ +++++...+..+|+.+..+ ...++-|++||.|.++-
T Consensus 18 ~~~M~I~v---NGe~~--el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 18 GGRHMLQL---NGKDV--KWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp ----CEEE---TTEEE--CCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred CcceEEEE---CCEEE--ECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 34566554 45644 45665 8999998876 5666777788899887433 34456799999999874
No 228
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=72.54 E-value=19 Score=31.25 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=42.2
Q ss_pred cEEEEEEeCC--------CcEEEEEec--CCCCHHHHHHHHHHHhCCCCCCe-EEEeCCe------ecCCcc---cc--c
Q 004840 18 TIEIKIKTLD--------SQTYTLRVD--KQVPVPALKEQIASVTGVLSEQQ-RLICRGK------VLKDDQ---LL--S 75 (728)
Q Consensus 18 sMqItVKtLd--------GKt~tLeVd--psdTV~dLKekIeektGIPpeqQ-RLIF~GK------vLkDd~---TL--s 75 (728)
+|+|+|+... .+..++++. ...||.+|++.+.++..-..... .+.-+|+ ++-|+. .+ .
T Consensus 1 mM~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~ 80 (99)
T 2qjl_A 1 MVNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEK 80 (99)
T ss_dssp CEEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGG
T ss_pred CcEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCC
Confidence 3788888763 245667776 67899999999988763111100 0111221 222222 22 3
Q ss_pred cccccCCcEEEEE
Q 004840 76 AYHVEDGHTLHMV 88 (728)
Q Consensus 76 dYGIkdGsTLhLV 88 (728)
++-+++|+.|.++
T Consensus 81 d~~L~dgDeVa~~ 93 (99)
T 2qjl_A 81 DYILEDGDIISFT 93 (99)
T ss_dssp GCBCCTTCEEEEE
T ss_pred CcCcCCCCEEEEE
Confidence 6789999998886
No 229
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=72.43 E-value=10 Score=42.88 Aligned_cols=75 Identities=15% Similarity=0.225 Sum_probs=56.9
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEeC---C--eecCCccccccccccCCcEEEEEEe
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLICR---G--KVLKDDQLLSAYHVEDGHTLHMVVR 90 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPp-eqQRLIF~---G--KvLkDd~TLsdYGIkdGsTLhLVlR 90 (728)
..|.|.|..+|| ++.|.|++..|+.+|-..|+.+.|+.. +..-|.|. | ..|+.++.|.+.+++.+..+.|.+|
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 468999999998 678999999999999999999999864 34455552 2 3577778888877766665555555
Q ss_pred cC
Q 004840 91 QP 92 (728)
Q Consensus 91 ~p 92 (728)
..
T Consensus 82 vk 83 (575)
T 2i1j_A 82 AK 83 (575)
T ss_dssp ES
T ss_pred EE
Confidence 43
No 230
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=72.11 E-value=0.39 Score=41.97 Aligned_cols=42 Identities=2% Similarity=-0.140 Sum_probs=37.7
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHhhhc
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLGS 146 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAvL~s 146 (728)
.+|+.+.+.|++++++..||.... +.|++++++||+|.+-..
T Consensus 13 ~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l 55 (91)
T 2io0_B 13 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI 55 (91)
T ss_dssp TTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEEC
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc
Confidence 478889999999999999999999 999999999999987653
No 231
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=71.39 E-value=0.64 Score=40.20 Aligned_cols=37 Identities=8% Similarity=-0.067 Sum_probs=32.4
Q ss_pred CCCccccccccccchhccccccc-cCCCCchhHHHHHH
Q 004840 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (728)
Q Consensus 106 tGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFA 142 (728)
.++.+...+..+.||.+||.+|+ ..|+|+..|+|.+.
T Consensus 21 ~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~ 58 (97)
T 1wjn_A 21 ERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYE 58 (97)
T ss_dssp SSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEE
Confidence 45667788899999999999999 99999999999653
No 232
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=70.69 E-value=0.12 Score=42.78 Aligned_cols=41 Identities=2% Similarity=-0.129 Sum_probs=36.9
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHhhh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAvL~ 145 (728)
.+|+.+.+.|+++++++.|+.... +.|++++++||+|.+-.
T Consensus 9 ~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~ 50 (72)
T 1wm3_A 9 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP 50 (72)
T ss_dssp TTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEE
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEE
Confidence 467889999999999999999998 99999999999988664
No 233
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=70.15 E-value=7.6 Score=43.52 Aligned_cols=128 Identities=13% Similarity=0.000 Sum_probs=76.1
Q ss_pred cEEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHhCCC---CCCeEE--EeCCee---cCCccccccccccCCcEEEE
Q 004840 18 TIEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASVTGVL---SEQQRL--ICRGKV---LKDDQLLSAYHVEDGHTLHM 87 (728)
Q Consensus 18 sMqItVKtLdGK--t~tLeVdpsdTV~dLKekIeektGIP---peqQRL--IF~GKv---LkDd~TLsdYGIkdGsTLhL 87 (728)
.|+|+....+.+ .+.+-|.++.||.+|.+++.++.+++ ....|| ++++|. ++++.+|..+.=....+|.+
T Consensus 339 ~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~ri 418 (530)
T 2ylm_A 339 SFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRI 418 (530)
T ss_dssp CEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEE
T ss_pred eEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEE
Confidence 455554433222 56678889999999999999999987 466777 478864 56676776543211333333
Q ss_pred EEecCCCC---CCCCCCCCC---------CCCCccccccccccchhccccccc-cCCCCchhH-HHHHHhhh
Q 004840 88 VVRQPVPS---SSDGTHNLP---------GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEIS-QIVSAVLG 145 (728)
Q Consensus 88 VlR~p~s~---sss~~qIfV---------ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQ-RLIFAvL~ 145 (728)
-.-..... .....-|.| .-|--+.+.|.++.++.++|.+|+ +.|++...- ++-|+++.
T Consensus 419 eeip~ee~~~~~~~~~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~keF~K~Kfa~v~ 490 (530)
T 2ylm_A 419 EEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVM 490 (530)
T ss_dssp EECCGGGSSCCTTTEEEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHHHHTTCEEEEEE
T ss_pred EECCHHHhccCCCCcEEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHhhhhhEEEEEEE
Confidence 22111100 000011111 124445678999999999999999 999875422 23344443
No 234
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=70.04 E-value=0.17 Score=42.86 Aligned_cols=41 Identities=5% Similarity=-0.036 Sum_probs=36.5
Q ss_pred CCCC-ccccccccccchhccccccc-cCCCCchhHHHHHHhhh
Q 004840 105 GTSR-SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (728)
Q Consensus 105 ltGk-Titl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAvL~ 145 (728)
.+|+ .+.+.|++++++..|+.... +.|++++++||+|.+-.
T Consensus 15 ~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~ 57 (79)
T 3a4r_A 15 KEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTK 57 (79)
T ss_dssp SSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEE
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEE
Confidence 4675 78999999999999999988 99999999999988764
No 235
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=69.22 E-value=3.6 Score=38.22 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=30.2
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe
Q 004840 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC 63 (728)
Q Consensus 31 ~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF 63 (728)
.++.|-.++|+.+||+.|++.+|+++++|||-+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 467899999999999999999999999999964
No 236
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=67.37 E-value=12 Score=30.67 Aligned_cols=54 Identities=11% Similarity=0.144 Sum_probs=37.3
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-----CCCCCeEEEeCCeecCCccccccccccCCcEEEEE
Q 004840 29 QTYTLRVDKQVPVPALKEQIASVTG-----VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIeektG-----IPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLV 88 (728)
+.+.++ ....||.+|++.+..+.. +......+..+|+.... ++-+++|+.|.++
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEE
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEe
Confidence 345555 567899999999875531 22234467788887752 5678999999886
No 237
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=65.39 E-value=0.52 Score=42.79 Aligned_cols=41 Identities=2% Similarity=-0.062 Sum_probs=37.0
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHhhh
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAvL~ 145 (728)
..|+.+.+.|.+++++..||..+. +.|++++++||+|..-.
T Consensus 34 ~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~ 75 (110)
T 2k8h_A 34 ADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTP 75 (110)
T ss_dssp TTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCB
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEE
Confidence 477888999999999999999999 99999999999998765
No 238
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=65.12 E-value=19 Score=31.36 Aligned_cols=67 Identities=10% Similarity=0.139 Sum_probs=42.5
Q ss_pred cEEEEEEeCC------C-cEEEEEecCCCCHHHHHHHHHHHhC-CCC---------CCe-------EEEeCCeecCCccc
Q 004840 18 TIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-VLS---------EQQ-------RLICRGKVLKDDQL 73 (728)
Q Consensus 18 sMqItVKtLd------G-Kt~tLeVdpsdTV~dLKekIeektG-IPp---------eqQ-------RLIF~GKvLkDd~T 73 (728)
+|+|+|+... | +.+.++ ..||.+|.+.+..++. +.. ... .+..+|+......
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~- 78 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE- 78 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-
Confidence 5899999875 2 344444 6899999999987742 111 012 4566666553211
Q ss_pred cccccccCCcEEEEE
Q 004840 74 LSAYHVEDGHTLHMV 88 (728)
Q Consensus 74 LsdYGIkdGsTLhLV 88 (728)
-.++-+++|+.|.++
T Consensus 79 ~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 79 GLETLLKDSDEIGIL 93 (99)
T ss_dssp STTSCCCTTEEEEEE
T ss_pred CCCCCCCCCCEEEEE
Confidence 235578999998886
No 239
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=64.96 E-value=0.32 Score=43.59 Aligned_cols=42 Identities=2% Similarity=-0.140 Sum_probs=37.7
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHhhhc
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLGS 146 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAvL~s 146 (728)
..|+.+.+.|++++++..|+..+. +.|++++++||+|..-..
T Consensus 32 ~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l 74 (104)
T 1wz0_A 32 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI 74 (104)
T ss_dssp SSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBC
T ss_pred CCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEc
Confidence 467888999999999999999998 999999999999987654
No 240
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=64.48 E-value=15 Score=32.40 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=35.8
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI 62 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI 62 (728)
..|+|+|-+- +..|.|.|..+.+..+||.||..+..+ +...|+
T Consensus 11 ~~~KVK~yy~-DDIiAIrvP~di~~~~L~dKi~~RLk~--~~~~l~ 53 (85)
T 1ip9_A 11 KTTKIKFYYK-DDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQ 53 (85)
T ss_dssp CCEEEEECBT-TCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEE
T ss_pred CceEEEEEec-CcEEEEECCCCCCHHHHHHHHHHHhcc--cceEEE
Confidence 5688888884 578999999999999999999999888 344443
No 241
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=63.80 E-value=0.68 Score=40.36 Aligned_cols=42 Identities=2% Similarity=-0.140 Sum_probs=37.5
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHhhhc
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLGS 146 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAvL~s 146 (728)
..|+.+.+.|.++.++..|+..+. +.|++++++||+|.+-..
T Consensus 25 ~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l 67 (93)
T 2d07_B 25 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI 67 (93)
T ss_dssp TTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEEC
T ss_pred CCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEc
Confidence 367788899999999999999998 999999999999987764
No 242
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=63.12 E-value=25 Score=31.88 Aligned_cols=73 Identities=11% Similarity=0.145 Sum_probs=52.7
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE---eCCee--cCCccccccccccCCcEEEEEEe
Q 004840 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGKV--LKDDQLLSAYHVEDGHTLHMVVR 90 (728)
Q Consensus 18 sMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI---F~GKv--LkDd~TLsdYGIkdGsTLhLVlR 90 (728)
.+...|-..+...+++.+..+.|+.+|+..+++|.+...+.+.|+ +.|.. |++++.--.-.+.-...|++..|
T Consensus 9 ~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 9 EIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp CCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred ceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 455667777788889999999999999999999999877788775 56643 45554433333444566766665
No 243
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=61.54 E-value=22 Score=36.77 Aligned_cols=53 Identities=15% Similarity=0.273 Sum_probs=41.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC-eec-CCccccccccc
Q 004840 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG-KVL-KDDQLLSAYHV 79 (728)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~G-KvL-kDd~TLsdYGI 79 (728)
.-....+.+.+..|+.+||++|++.++++++.|.|+|.+ +.. +.......|.-
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 345667889999999999999999999999999999998 443 33344555543
No 244
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=58.94 E-value=12 Score=33.65 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=37.2
Q ss_pred CcEEEEEEeCC-------CcEEEEEecCCCCHHHHHHHHHHHhCCCCC-----CeEEEeCC
Q 004840 17 TTIEIKIKTLD-------SQTYTLRVDKQVPVPALKEQIASVTGVLSE-----QQRLICRG 65 (728)
Q Consensus 17 ssMqItVKtLd-------GKt~tLeVdpsdTV~dLKekIeektGIPpe-----qQRLIF~G 65 (728)
..|+|+|.+-+ +..+.|.|.++.+..+|..+|.+|.+++.. ..+|-|+.
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 34888888753 557899999999999999999999886522 23565554
No 245
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=58.65 E-value=0.41 Score=43.21 Aligned_cols=41 Identities=5% Similarity=-0.087 Sum_probs=37.0
Q ss_pred CCCccccccccccchhccccccc-cCCCCchhHHHHHHhhhc
Q 004840 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLGS 146 (728)
Q Consensus 106 tGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAvL~s 146 (728)
+|+.+.+.|++++++..||..+. +.|++++++||+|++-..
T Consensus 39 ~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl 80 (106)
T 2eke_C 39 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI 80 (106)
T ss_dssp SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEc
Confidence 57788899999999999999988 999999999999987764
No 246
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=58.15 E-value=2.8 Score=38.02 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=43.0
Q ss_pred cEEEEEEeCC------CcEEEEEecC----CCCHHHHHHHHHHHhCCCCCCeEEEeC-C--e------ecCCccc---c-
Q 004840 18 TIEIKIKTLD------SQTYTLRVDK----QVPVPALKEQIASVTGVLSEQQRLICR-G--K------VLKDDQL---L- 74 (728)
Q Consensus 18 sMqItVKtLd------GKt~tLeVdp----sdTV~dLKekIeektGIPpeqQRLIF~-G--K------vLkDd~T---L- 74 (728)
.|+|+||... |+.+.+++.. ..||.+|-+.|.+++ +..+-+|+.. | + +|-+++. |
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~ 81 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVG 81 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHT
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccC
Confidence 4788888765 3555677763 259999988888765 2223333322 3 1 3333322 2
Q ss_pred -ccccccCCcEEEEEE
Q 004840 75 -SAYHVEDGHTLHMVV 89 (728)
Q Consensus 75 -sdYGIkdGsTLhLVl 89 (728)
.+|.+++|++|.++-
T Consensus 82 gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 82 GMDYVLNDGDTVEFIS 97 (110)
T ss_dssp SSCCCCCSSCEEEEEE
T ss_pred CcccCCCCcCEEEEeC
Confidence 368899999988754
No 247
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=56.16 E-value=13 Score=29.91 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=39.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
+|+.+ ++....||.+|.+++ +++.....+..+|+.+... ...++-+++|+.|.++-
T Consensus 6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEE
T ss_pred CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEe
Confidence 55654 456678999999876 4666777778888877432 23356789999998874
No 248
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=54.64 E-value=17 Score=40.80 Aligned_cols=78 Identities=10% Similarity=0.217 Sum_probs=61.0
Q ss_pred CCCCcEEEEEEeCC--CcEEE----EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC------eecC-Cccccccc--c
Q 004840 14 SSETTIEIKIKTLD--SQTYT----LRVDKQVPVPALKEQIASVTGVLSEQQRLICRG------KVLK-DDQLLSAY--H 78 (728)
Q Consensus 14 ~s~ssMqItVKtLd--GKt~t----LeVdpsdTV~dLKekIeektGIPpeqQRLIF~G------KvLk-Dd~TLsdY--G 78 (728)
.....+-|++|..| .+++. +-|+..++|.+|-..|.++.|+|++.--++|.- ..|+ .+.+|.++ .
T Consensus 126 ~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~e 205 (530)
T 2ylm_A 126 DKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDE 205 (530)
T ss_dssp CTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTT
T ss_pred CCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhc
Confidence 34456899999887 34443 578999999999999999999999877666642 3466 57899999 9
Q ss_pred ccCCcEEEEEEec
Q 004840 79 VEDGHTLHMVVRQ 91 (728)
Q Consensus 79 IkdGsTLhLVlR~ 91 (728)
|.+|+.|.+-...
T Consensus 206 L~~GdII~fQ~~~ 218 (530)
T 2ylm_A 206 LMDGDIIVFQKDD 218 (530)
T ss_dssp CCTTEEEEEEECC
T ss_pred ccCCCEEEEEecC
Confidence 9999998776543
No 249
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=54.04 E-value=19 Score=28.78 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=40.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEEe
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVlR 90 (728)
|.|+|+..+|+. +++....|+.+|-+.|..... ....-...+|+..+- ++-+++|+.|.++-.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl-----~~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPL-----SYVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCT-----TCBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCC-----CcCcCCCCEEEEEEC
Confidence 567777777876 456678999999888732211 111222457776544 366677888887753
No 250
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=51.00 E-value=20 Score=29.13 Aligned_cols=54 Identities=4% Similarity=0.171 Sum_probs=38.9
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCe--EEEeCCeecCCccccccccccCCcEEEEE
Q 004840 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQ--RLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIeektGIPpeqQ--RLIF~GKvLkDd~TLsdYGIkdGsTLhLV 88 (728)
+...+++....||.+|++.+..++. ..... .+..+|+.... +.-+++|+.|.++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~ 71 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQK-----SDFIQPNDTVALI 71 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECT-----TSEECTTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCC-----CCCcCCCCEEEEE
Confidence 3556777777899999999977642 01233 67788888764 3678999998886
No 251
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=50.50 E-value=88 Score=28.25 Aligned_cols=85 Identities=13% Similarity=0.185 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC--CeEE--EeCCeecCCcccccc
Q 004840 1 MESRGTVKIPGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE--QQRL--ICRGKVLKDDQLLSA 76 (728)
Q Consensus 1 M~ssSs~~i~~ae~s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpe--qQRL--IF~GKvLkDd~TLsd 76 (728)
|+.......+.+......=-++|+..+.+. ..-|- -.+..+|+.|..++++++.. .-+| ..+|..++|+.-+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~kPfkV~~~~~r~-k~GV~-A~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~t 78 (100)
T 1f2r_I 1 MELSRGASAPDPDDVRPLKPCLLRRNHSRD-QHGVA-ASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLC 78 (100)
T ss_dssp CCSCCSSSSSSCTTSCCCEEEEEEETTEEE-EEEEE-ESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSS
T ss_pred CCcCcccCCcCcccCCCCCCEEEeeCCCcc-EEeEE-cCCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhc
Confidence 333333333333333333456666433333 44443 26899999999999999753 2444 457998887754333
Q ss_pred ccccCCcEEEEEEe
Q 004840 77 YHVEDGHTLHMVVR 90 (728)
Q Consensus 77 YGIkdGsTLhLVlR 90 (728)
+ +..|+.+++.
T Consensus 79 L---p~nT~lmvL~ 89 (100)
T 1f2r_I 79 L---PSNTKFVALA 89 (100)
T ss_dssp S---CSCCEEEEEC
T ss_pred C---CCCCEEEEEc
Confidence 3 2455555554
No 252
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=50.02 E-value=27 Score=27.94 Aligned_cols=56 Identities=14% Similarity=0.231 Sum_probs=40.1
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 26 LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 26 LdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
.+|+.+.+ ...||.+|.+++ ++++....+..+|+.+..+ ...++.+++|+.|.++-
T Consensus 4 vNg~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 4 LNGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp ETTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred ECCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 36676654 568999999877 4566667778888877532 23456789999998874
No 253
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=49.85 E-value=12 Score=43.15 Aligned_cols=51 Identities=25% Similarity=0.324 Sum_probs=41.7
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC-eecCCccccccc
Q 004840 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG-KVLKDDQLLSAY 77 (728)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~G-KvLkDd~TLsdY 77 (728)
..+.+.+.+.+++|+.+||.+|++.++|+++.|.|++.. ..+........|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 356678899999999999999999999999999999875 445555555554
No 254
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=46.47 E-value=26 Score=31.23 Aligned_cols=59 Identities=8% Similarity=0.202 Sum_probs=41.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCC-----------CeEEEeCC-eecC------CccccccccccCCcEEEEE
Q 004840 30 TYTLRVDKQVPVPALKEQIASVTGVLSE-----------QQRLICRG-KVLK------DDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 30 t~tLeVdpsdTV~dLKekIeektGIPpe-----------qQRLIF~G-KvLk------Dd~TLsdYGIkdGsTLhLV 88 (728)
...|+|++++|+.+|-+.|.+.-.+-.. ...|+... ..|+ -+++|.++|+.+|+.|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 3468899999999999999985433222 23344333 2342 2467999999999999885
No 255
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=45.33 E-value=4.4 Score=41.24 Aligned_cols=49 Identities=4% Similarity=-0.124 Sum_probs=0.0
Q ss_pred CCCCCCC-CCCCccccccccccchhccccccc-cCCCCchhHHHHHHhhhc
Q 004840 98 DGTHNLP-GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLGS 146 (728)
Q Consensus 98 s~~qIfV-ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAvL~s 146 (728)
.-+.++| ..|+.+.+.|+++..+..||.... +.|+++++.||+|++-..
T Consensus 20 e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI 70 (227)
T 3v7o_A 20 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI 70 (227)
T ss_dssp ---------------------------------------------------
T ss_pred CeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEec
Confidence 3455555 567888999999999999999888 999999999999997654
No 256
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=40.40 E-value=70 Score=29.72 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=51.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC------CeEEE---eCCee--cCCccccccccccCCcEE
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE------QQRLI---CRGKV--LKDDQLLSAYHVEDGHTL 85 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpe------qQRLI---F~GKv--LkDd~TLsdYGIkdGsTL 85 (728)
..+...|-..+...+++.+..+.|+.+|+..+++|.+...+ ++.|+ +.|.. |++++.--.-.+.-...|
T Consensus 8 Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRL 87 (120)
T 2dhz_A 8 DEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHL 87 (120)
T ss_dssp CCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEE
T ss_pred CcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceE
Confidence 35667777777788889999999999999999999987554 67774 56643 455543322333335666
Q ss_pred EEEEe
Q 004840 86 HMVVR 90 (728)
Q Consensus 86 hLVlR 90 (728)
++..|
T Consensus 88 fvc~k 92 (120)
T 2dhz_A 88 FACTR 92 (120)
T ss_dssp EEECT
T ss_pred EEeeh
Confidence 66654
No 257
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=37.87 E-value=54 Score=29.07 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=48.2
Q ss_pred CcEEEEEEeCC-C--cEEEEEecCCCCHHHHHHHHHH--H-hCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 17 TTIEIKIKTLD-S--QTYTLRVDKQVPVPALKEQIAS--V-TGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 17 ssMqItVKtLd-G--Kt~tLeVdpsdTV~dLKekIee--k-tGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
.+|+|.|.+.- . +.+.+++....||.++-+.+-- + ..|......+..+|+..+ .++-+++|+.|.++-
T Consensus 11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 46788876653 2 3456788899999998887743 2 245555677878888776 556688999998864
No 258
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=36.77 E-value=57 Score=30.61 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeec-----CC--ccccccccccCCcEEEEEEe
Q 004840 37 KQVPVPALKEQIASVTGVLSEQQRLIC--RGKVL-----KD--DQLLSAYHVEDGHTLHMVVR 90 (728)
Q Consensus 37 psdTV~dLKekIeektGIPpeqQRLIF--~GKvL-----kD--d~TLsdYGIkdGsTLhLVlR 90 (728)
...|+.+|-+.|..++|+.- +.-++- +.+.| +| +++|.++||++|+.|.++--
T Consensus 18 ~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 18 NKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp HHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred cccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEcc
Confidence 35799999888988888763 444332 23343 22 48999999999999988754
No 259
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=36.63 E-value=29 Score=29.37 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=40.0
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCC-CCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 27 DSQTYTLRVDKQVPVPALKEQIASVTGVL-SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIeektGIP-peqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
+|+.+.+......||.+|.+.+ +++ ++..-+.++|+.+..+ ...++-+++||.|.++-
T Consensus 6 NGe~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 6 NGKPSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLY 64 (78)
T ss_dssp TTEEEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECC
T ss_pred CCEEEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEe
Confidence 4665543211568999988754 566 6666788899888433 34567789999998864
No 260
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=36.62 E-value=9.7 Score=35.02 Aligned_cols=70 Identities=17% Similarity=0.278 Sum_probs=51.3
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCC---eecCCccccccccccCCcEEEEEE
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRG---KVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPp--eqQRLIF~G---KvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
++|+|..++ ..++++|..+.-|.-|.-||-++..++. .+.-|-..- .+|+-..+|..|||+.+..+++.-
T Consensus 27 L~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp 101 (112)
T 2lgx_A 27 LSVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTP 101 (112)
T ss_dssp EECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC
T ss_pred EEEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecC
Confidence 455555543 7788999999999999999998877654 333333222 356888999999999998887753
No 261
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=35.98 E-value=84 Score=25.97 Aligned_cols=55 Identities=11% Similarity=0.166 Sum_probs=36.3
Q ss_pred EEecCCCCHHHHHHHHHHHhC------C-----CCCCeEEEeCCeecCCccccccccccCCcEEEEE
Q 004840 33 LRVDKQVPVPALKEQIASVTG------V-----LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 33 LeVdpsdTV~dLKekIeektG------I-----PpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLV 88 (728)
++++...||.+|.+.+..+.. + ......+..+|+..... .-.++-+++|+.|.++
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEe
Confidence 456566899999999987642 1 01334567777766422 1235678999999886
No 262
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=35.70 E-value=1.3e+02 Score=26.46 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=48.3
Q ss_pred EEEEecCCCCHHHHHHHHHHHh-C--CC--CC-CeEEEeCC--eecCCccccccccccCCcEEEEEEe
Q 004840 31 YTLRVDKQVPVPALKEQIASVT-G--VL--SE-QQRLICRG--KVLKDDQLLSAYHVEDGHTLHMVVR 90 (728)
Q Consensus 31 ~tLeVdpsdTV~dLKekIeekt-G--IP--pe-qQRLIF~G--KvLkDd~TLsdYGIkdGsTLhLVlR 90 (728)
.-+.|+..+|+.++-++++... | +. +. -.+..++| +.|..+.|+++-||+.-..|.+...
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 4468999999999999998652 3 32 22 46778999 9999999999999999888887653
No 263
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=33.38 E-value=45 Score=27.77 Aligned_cols=55 Identities=11% Similarity=0.145 Sum_probs=40.4
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEEE
Q 004840 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLVl 89 (728)
+|+.+.+ ...||.+|.+. .+++++..-+.++|+.+.. ....++-+++||.|.++-
T Consensus 6 NG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 6 NGEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILT 60 (73)
T ss_dssp TTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEEC
T ss_pred CCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEc
Confidence 5675554 56899998764 5777877788889987743 234567889999999874
No 264
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=33.29 E-value=1.2e+02 Score=26.75 Aligned_cols=71 Identities=11% Similarity=0.091 Sum_probs=53.9
Q ss_pred EEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHh-C--C--CCCCeEEEeCCee--cCCccccccccccCCcEEEEEE
Q 004840 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVT-G--V--LSEQQRLICRGKV--LKDDQLLSAYHVEDGHTLHMVV 89 (728)
Q Consensus 19 MqItVKtLdGK-t~tLeVdpsdTV~dLKekIeekt-G--I--PpeqQRLIF~GKv--LkDd~TLsdYGIkdGsTLhLVl 89 (728)
+-|..+..+.- ..-+.|+..+|+.++-+|++... | + .+.-.|..++|+. |.++.++++.||+.-+.|.++.
T Consensus 4 ~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 4 FPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred cceEEEeccccEEEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 34555554332 33468999999999999998752 3 2 2246788899988 9999999999999999888765
No 265
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=32.39 E-value=1.1e+02 Score=27.03 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=31.4
Q ss_pred CcEEEEEEeCCCcEE-EEEec-CCCCHHHHHHHHHHHhCCCCCCeEE
Q 004840 17 TTIEIKIKTLDSQTY-TLRVD-KQVPVPALKEQIASVTGVLSEQQRL 61 (728)
Q Consensus 17 ssMqItVKtLdGKt~-tLeVd-psdTV~dLKekIeektGIPpeqQRL 61 (728)
.+..|+-|....+.+ +|.++ ...+|.+||++|..+.++-..+.-|
T Consensus 5 ~mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL 51 (86)
T 2c7h_A 5 SMSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDL 51 (86)
T ss_dssp TBEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEE
T ss_pred ceeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccE
Confidence 345677777665544 47776 5689999999999888775444433
No 266
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=30.83 E-value=62 Score=35.82 Aligned_cols=47 Identities=4% Similarity=0.063 Sum_probs=40.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEe
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLIC 63 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPp--eqQRLIF 63 (728)
..|.+.|..++|....+.|+...|+.+|-+.|+.+.|+.. +..-|.+
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 4588999999999999999999999999999999999974 3445544
No 267
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.54 E-value=1.2e+02 Score=26.99 Aligned_cols=66 Identities=12% Similarity=0.240 Sum_probs=42.4
Q ss_pred EEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeecCCccccccccccCCcEEEEEEec
Q 004840 20 EIKIKTLD-SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (728)
Q Consensus 20 qItVKtLd-GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF--~GKvLkDd~TLsdYGIkdGsTLhLVlR~ 91 (728)
-++|+..+ .+.+-|-+ .+..+|+.|..+++.++...-+|+. +|..++|+.-+..+ +..|+.+++..
T Consensus 11 pfkV~~~~Rs~k~GV~A---~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~~ 79 (91)
T 2eel_A 11 PFRVSNHDRSSRRGVMA---SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILEK 79 (91)
T ss_dssp EEEEECTTSCCCEEEEE---SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEET
T ss_pred CEEEecCCCCeEEeEEc---CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEcC
Confidence 45555543 23333433 5799999999999999765566643 68888877554333 35666666654
No 268
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=26.51 E-value=3.4 Score=41.26 Aligned_cols=44 Identities=5% Similarity=-0.096 Sum_probs=38.5
Q ss_pred CCCCccccccccccchhccccccc-cCCCCchhHHHHHHhhhccC
Q 004840 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLGSFG 148 (728)
Q Consensus 105 ltGkTitl~V~pSdTVesLK~kIQ-~EGIPpDQQRLIFAvL~sfG 148 (728)
..|+.+.+.|.++..+..||.... +.|++++++||+|.+-+.-+
T Consensus 36 ~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~ 80 (200)
T 3pge_A 36 DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA 80 (200)
T ss_dssp CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCT
T ss_pred cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCC
Confidence 467788899999999999998888 99999999999999876543
No 269
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=26.29 E-value=1e+02 Score=28.02 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=32.6
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHH
Q 004840 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASV 51 (728)
Q Consensus 15 s~ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeek 51 (728)
.+..+.|.+-..+|-.+.+++..+.|+.+||+.+-+.
T Consensus 16 ~~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 16 MPPRILVECLLPNGMIVTLECLREATLITIKHELFKE 52 (108)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHH
T ss_pred CCCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHH
Confidence 3466888888999999999999999999999999765
No 270
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=25.81 E-value=16 Score=30.39 Aligned_cols=47 Identities=21% Similarity=0.356 Sum_probs=34.1
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCcEEEEE
Q 004840 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (728)
Q Consensus 33 LeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvLkDd~TLsdYGIkdGsTLhLV 88 (728)
+++....||.+|.+.+ +++.....+..+|+.+..+ +-|++|+.|.++
T Consensus 25 ~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 25 IEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred EECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 4556678999998765 3566666778889888654 567888877654
No 271
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=25.24 E-value=83 Score=36.18 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=36.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCC
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVL 55 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIP 55 (728)
..|.+.|..++|....+.|+...|+.+|-++|+.+.|+.
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~ 300 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLK 300 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCS
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCc
Confidence 468999999999999999999999999999999999874
No 272
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=24.95 E-value=2.6e+02 Score=24.46 Aligned_cols=74 Identities=8% Similarity=0.079 Sum_probs=46.4
Q ss_pred CCCcEEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec-CCccccccc--cccCCcEEEE
Q 004840 15 SETTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL-KDDQLLSAY--HVEDGHTLHM 87 (728)
Q Consensus 15 s~ssMqItVKtLdG----Kt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~GKvL-kDd~TLsdY--GIkdGsTLhL 87 (728)
.+..+.|.+|..+. +...+.|..+.|+.+|..-|.++.++ +..-|+.+...+ ..+.++++. .-+++..|++
T Consensus 5 ~~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv 82 (91)
T 3w1s_C 5 NIQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIV 82 (91)
T ss_dssp -CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEE
T ss_pred CCCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEE
Confidence 44567777777543 33457789999999999999999988 455555566544 445555432 1124667766
Q ss_pred EEe
Q 004840 88 VVR 90 (728)
Q Consensus 88 VlR 90 (728)
...
T Consensus 83 ~Ys 85 (91)
T 3w1s_C 83 SYC 85 (91)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
No 273
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=23.01 E-value=1.3e+02 Score=31.15 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=49.0
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEE--e-C---CeecCCccccccc----cccCCcEE
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLI--C-R---GKVLKDDQLLSAY----HVEDGHTL 85 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQ-RLI--F-~---GKvLkDd~TLsdY----GIkdGsTL 85 (728)
..+.|+|-..+|...+|.|++.+|+.+|-+.+..+.++....- -|+ + . -+.|+|...|.+. .......|
T Consensus 30 ~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l 109 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKL 109 (281)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEE
T ss_pred ccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceE
Confidence 4567888888899999999999999999999998887654332 222 1 1 2567777665543 34344454
Q ss_pred EEE
Q 004840 86 HMV 88 (728)
Q Consensus 86 hLV 88 (728)
.+.
T Consensus 110 ~f~ 112 (281)
T 4gmv_A 110 IFM 112 (281)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 274
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=22.94 E-value=2.6e+02 Score=24.52 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=36.7
Q ss_pred CcEEEEEEeCCCcEEEEEec--CCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004840 17 TTIEIKIKTLDSQTYTLRVD--KQVPVPALKEQIASVTGVLSEQQRLICRG 65 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVd--psdTV~dLKekIeektGIPpeqQRLIF~G 65 (728)
..++|+.|. +.....+.++ ...+.++|+.+++....++.....|.|..
T Consensus 5 ~~l~vKskf-~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D 54 (86)
T 1wmh_B 5 SIVEVKSKF-DAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD 54 (86)
T ss_dssp CEEEEEEEE-TTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC
T ss_pred CEEEEEeec-CCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC
Confidence 457777777 5666667766 45899999999999999877777777754
No 275
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=22.48 E-value=55 Score=27.99 Aligned_cols=36 Identities=22% Similarity=0.157 Sum_probs=28.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCC-----CCCeEEEeCC
Q 004840 30 TYTLRVDKQVPVPALKEQIASVTGVL-----SEQQRLICRG 65 (728)
Q Consensus 30 t~tLeVdpsdTV~dLKekIeektGIP-----peqQRLIF~G 65 (728)
.+.|.|.++.+..+|..+|.+|.++. ....+|-|+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 57899999999999999999999865 3445666644
No 276
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=22.30 E-value=1.5e+02 Score=29.05 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=35.7
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC
Q 004840 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ 58 (728)
Q Consensus 17 ssMqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeq 58 (728)
..+.|.|-..++...+|.|++.+|+.+|-+.|..+.++..+.
T Consensus 33 ~k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~ 74 (291)
T 3tca_A 33 KKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNV 74 (291)
T ss_dssp CEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCT
T ss_pred cceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCC
Confidence 346677777889999999999999999999999999986543
No 277
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=20.89 E-value=1.6e+02 Score=25.92 Aligned_cols=40 Identities=30% Similarity=0.401 Sum_probs=34.4
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEEeCCee
Q 004840 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLICRGKV 67 (728)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIeektGIPpeqQ-RLIF~GKv 67 (728)
...++|.|++..+=.++|+.|+..+++.+... .|+..||.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 36899999999999999999999999998776 45677764
No 278
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=20.70 E-value=1.1e+02 Score=31.23 Aligned_cols=59 Identities=10% Similarity=0.204 Sum_probs=38.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-------CeecCCccccccc
Q 004840 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-------GKVLKDDQLLSAY 77 (728)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF~-------GKvLkDd~TLsdY 77 (728)
..|+|-..++...+|.|++.+|+.+|-..+..+.++....--.+|. -+.|+|...+-+.
T Consensus 9 ~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ev 74 (256)
T 3hk0_A 9 QDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQV 74 (256)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHHH
T ss_pred eEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHHH
Confidence 4667777889999999999999999999998887654333322221 2567777655443
No 279
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=20.24 E-value=2.3e+02 Score=26.31 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=55.6
Q ss_pred CcEEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHH-HhC-------CCCCCeEEEeCCeec--CCccccccccccCC
Q 004840 17 TTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIAS-VTG-------VLSEQQRLICRGKVL--KDDQLLSAYHVEDG 82 (728)
Q Consensus 17 ssMqItVKtLdG----Kt~tLeVdpsdTV~dLKekIee-ktG-------IPpeqQRLIF~GKvL--kDd~TLsdYGIkdG 82 (728)
..+-|+|-+-+. .-+.+.|.++++..+|-+++-. .++ |...+-.+..+|+.. +.+++|.+-||...
T Consensus 22 g~qLlYigWd~HllFcap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HK 101 (119)
T 3u52_E 22 GMQLLYVYWPDHLLFCAPFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHK 101 (119)
T ss_dssp TCEEEEEECTTCTTSCSCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTT
T ss_pred CCEEEEEEecCCeeecCceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCch
Confidence 456788888553 3467899999999998877743 333 555566788999998 45689999999999
Q ss_pred cEEEEE
Q 004840 83 HTLHMV 88 (728)
Q Consensus 83 sTLhLV 88 (728)
+.|.+.
T Consensus 102 s~lrf~ 107 (119)
T 3u52_E 102 SMLTVT 107 (119)
T ss_dssp EEEEEE
T ss_pred heEEEe
Confidence 998875
Done!