BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004841
(728 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 759
Score = 393 bits (1010), Expect = e-109, Method: Compositional matrix adjust.
Identities = 236/672 (35%), Positives = 372/672 (55%), Gaps = 38/672 (5%)
Query: 65 VLPSIREKHDEFM-LRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTC 122
+LP + D + L+++ W +H + + F +LDR ++ + S LP + ++GL
Sbjct: 118 ILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLEL 177
Query: 123 FRDLVYTE--LNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFE 180
FR + ++ + K D ++ LI++ER GE +DR+LL+++L + + + Y++ FE
Sbjct: 178 FRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGM-----LSDLQVYKDSFE 232
Query: 181 TAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQH 240
L++T Y+ + + E P+Y+ + L+ E DRV YL S++ L+ V+
Sbjct: 233 LKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEK 292
Query: 241 ELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGT 300
+LL + +L+K G LL +++V DL++M++LFS++ G + + +++ GT
Sbjct: 293 QLLGEHLTAILQK---GLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGT 349
Query: 301 ALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEA 360
A+V E +++ V+ +++ DK + CFQ + F +KE+
Sbjct: 350 AIVINPE----------------KDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKES 393
Query: 361 FEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFA 420
FE F NK + AEL+A D+ L+ G E +DE +E L+K++ L +I KD+F
Sbjct: 394 FETFINK--RPNKPAELIAKHVDSKLRAGNKEA-TDEELERTLDKIMILFRFIHGKDVFE 450
Query: 421 EFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEE 480
FY+K LA+RLL KSA+ D E+S+L+KLK +CG FTSK+EGM D+ L+++ F++
Sbjct: 451 AFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQ 510
Query: 481 YLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTW 540
++ N ++ P IDLTV +LT G+WP+Y +++L EM+K EVF+ FY K RKL W
Sbjct: 511 HMQNQSDSGP-IDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQW 569
Query: 541 IYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLH 600
+LG L +F+ E V+ +Q LL+FN D S+ EI + D ++ R L
Sbjct: 570 QTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQ 629
Query: 601 SLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPL----PPXXXXXXXXXXXX 656
SL+C K ++L K P K + D F FN +F K+ RIKI
Sbjct: 630 SLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVF 689
Query: 657 XXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLER 716
R+Y IDA+IVRIMK RK LGH LV E QL KP +KKRIE LI RDY+ER
Sbjct: 690 QDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPG--DLKKRIESLIDRDYMER 747
Query: 717 DKSNPNMFRYLA 728
DK NPN + Y+A
Sbjct: 748 DKDNPNQYHYVA 759
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 742
Score = 393 bits (1009), Expect = e-109, Method: Compositional matrix adjust.
Identities = 236/672 (35%), Positives = 372/672 (55%), Gaps = 38/672 (5%)
Query: 65 VLPSIREKHDEFM-LRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTC 122
+LP + D + L+++ W +H + + F +LDR ++ + S LP + ++GL
Sbjct: 101 ILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLEL 160
Query: 123 FRDLVYTE--LNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFE 180
FR + ++ + K D ++ LI++ER GE +DR+LL+++L + + + Y++ FE
Sbjct: 161 FRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGM-----LSDLQVYKDSFE 215
Query: 181 TAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQH 240
L++T Y+ + + E P+Y+ + L+ E DRV YL S++ L+ V+
Sbjct: 216 LKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEK 275
Query: 241 ELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGT 300
+LL + +L+K G LL +++V DL++M++LFS++ G + + +++ GT
Sbjct: 276 QLLGEHLTAILQK---GLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGT 332
Query: 301 ALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEA 360
A+V E +++ V+ +++ DK + CFQ + F +KE+
Sbjct: 333 AIVINPE----------------KDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKES 376
Query: 361 FEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFA 420
FE F NK + AEL+A D+ L+ G E +DE +E L+K++ L +I KD+F
Sbjct: 377 FETFINK--RPNKPAELIAKHVDSKLRAGNKEA-TDEELERTLDKIMILFRFIHGKDVFE 433
Query: 421 EFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEE 480
FY+K LA+RLL KSA+ D E+S+L+KLK +CG FTSK+EGM D+ L+++ F++
Sbjct: 434 AFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQ 493
Query: 481 YLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTW 540
++ N ++ P IDLTV +LT G+WP+Y +++L EM+K EVF+ FY K RKL W
Sbjct: 494 HMQNQSDSGP-IDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQW 552
Query: 541 IYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLH 600
+LG L +F+ E V+ +Q LL+FN D S+ EI + D ++ R L
Sbjct: 553 QTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQ 612
Query: 601 SLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPL----PPXXXXXXXXXXXX 656
SL+C K ++L K P K + D F FN +F K+ RIKI
Sbjct: 613 SLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVF 672
Query: 657 XXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLER 716
R+Y IDA+IVRIMK RK LGH LV E QL KP +KKRIE LI RDY+ER
Sbjct: 673 QDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPG--DLKKRIESLIDRDYMER 730
Query: 717 DKSNPNMFRYLA 728
DK NPN + Y+A
Sbjct: 731 DKDNPNQYHYVA 742
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|E Chain E, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 741
Score = 379 bits (972), Expect = e-105, Method: Compositional matrix adjust.
Identities = 232/660 (35%), Positives = 372/660 (56%), Gaps = 37/660 (5%)
Query: 76 FMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRDLVYTE--LN 132
L+++ + W NH + + F +LDR ++ + S LP + ++GL FR + ++ +
Sbjct: 112 LFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQ 171
Query: 133 GKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYS 192
K D ++ LI++ER GE IDR+LL+++L + ++ + Y++ FE L++T Y+
Sbjct: 172 NKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQI-----YQDSFEQRFLEETNRLYA 226
Query: 193 RKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLE 252
+ + E P+Y+ + L+ E DR+ YL +++ L+ V+ +LL + +L+
Sbjct: 227 AEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATVEKQLLGEHLTAILQ 286
Query: 253 KEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASN 312
K G + LL +++++DLS +++LFS++ G+ + + +++ A G+ +V E
Sbjct: 287 K---GLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINPE----- 338
Query: 313 KKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGS 372
+++ V+++++ DK ++ CF + F ++KEAFE F NK +
Sbjct: 339 -----------KDKTMVQELLDFKDKVDHIIDICFLKNEKFINAMKEAFETFINK--RPN 385
Query: 373 SSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLL 432
AEL+A + D+ L+ G E +DE +E+ML+K++ + +I KD+F FY+K LA+RLL
Sbjct: 386 KPAELIAKYVDSKLRAGNKEA-TDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLL 444
Query: 433 FDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGI 492
KSA+ D E+S+L+KLK +CG FTSK+EGM D+ L+++ F++Y+ N N I
Sbjct: 445 VGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQNQ-NVPGNI 503
Query: 493 DLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGK 552
+LTV +LT G+WP+Y +++LP EMVK E+F+ FY K RKL W +LG C L +
Sbjct: 504 ELTVNILTMGYWPTYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKLQWQSTLGHCVLKAE 563
Query: 553 FESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 612
F+ EL V+ +Q LL+FN + S EI + D ++ R L SL+C K ++L K
Sbjct: 564 FKEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLACGKARVLAK 623
Query: 613 EPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPXXXXXXXXXXXX----XXRRYAIDASIV 668
P K I D F N F K+ RIKI R+Y IDA+IV
Sbjct: 624 NPKGKDIEDGDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIV 683
Query: 669 RIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 728
RIMK RK L H LV E QL KP +KKRIE LI RDY+ERDK NPN + Y+A
Sbjct: 684 RIMKMRKTLSHNLLVSEVYNQLKFPVKP--ADLKKRIESLIDRDYMERDKENPNQYNYIA 741
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|H Chain H, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 726
Score = 379 bits (972), Expect = e-105, Method: Compositional matrix adjust.
Identities = 232/660 (35%), Positives = 372/660 (56%), Gaps = 37/660 (5%)
Query: 76 FMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRDLVYTE--LN 132
L+++ + W NH + + F +LDR ++ + S LP + ++GL FR + ++ +
Sbjct: 97 LFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQ 156
Query: 133 GKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYS 192
K D ++ LI++ER GE IDR+LL+++L + ++ + Y++ FE L++T Y+
Sbjct: 157 NKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQI-----YQDSFEQRFLEETNRLYA 211
Query: 193 RKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLE 252
+ + E P+Y+ + L+ E DR+ YL +++ L+ V+ +LL + +L+
Sbjct: 212 AEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATVEKQLLGEHLTAILQ 271
Query: 253 KEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASN 312
K G + LL +++++DLS +++LFS++ G+ + + +++ A G+ +V E
Sbjct: 272 K---GLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINPE----- 323
Query: 313 KKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGS 372
+++ V+++++ DK ++ CF + F ++KEAFE F NK +
Sbjct: 324 -----------KDKTMVQELLDFKDKVDHIIDICFLKNEKFINAMKEAFETFINK--RPN 370
Query: 373 SSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLL 432
AEL+A + D+ L+ G E +DE +E+ML+K++ + +I KD+F FY+K LA+RLL
Sbjct: 371 KPAELIAKYVDSKLRAGNKEA-TDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLL 429
Query: 433 FDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGI 492
KSA+ D E+S+L+KLK +CG FTSK+EGM D+ L+++ F++Y+ N N I
Sbjct: 430 VGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQNQ-NVPGNI 488
Query: 493 DLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGK 552
+LTV +LT G+WP+Y +++LP EMVK E+F+ FY K RKL W +LG C L +
Sbjct: 489 ELTVNILTMGYWPTYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKLQWQSTLGHCVLKAE 548
Query: 553 FESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 612
F+ EL V+ +Q LL+FN + S EI + D ++ R L SL+C K ++L K
Sbjct: 549 FKEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLACGKARVLAK 608
Query: 613 EPNTKTISPTDHFEFNSKFTDKMRRIKIPL----PPXXXXXXXXXXXXXXRRYAIDASIV 668
P K I D F N F K+ RIKI R+Y IDA+IV
Sbjct: 609 NPKGKDIEDGDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIV 668
Query: 669 RIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 728
RIMK RK L H LV E QL KP +KKRIE LI RDY+ERDK NPN + Y+A
Sbjct: 669 RIMKMRKTLSHNLLVSEVYNQLKFPVKP--ADLKKRIESLIDRDYMERDKENPNQYNYIA 726
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 760
Score = 339 bits (869), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 223/699 (31%), Positives = 375/699 (53%), Gaps = 50/699 (7%)
Query: 60 NILLLVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFI------ARRSLP 113
N L +L + DE +L+ ++W +++ + L+ YL+R+++ R+ +
Sbjct: 82 NYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIY 141
Query: 114 PLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMD 173
+ + L +RD ++ LN +V +AV+ LI++ER GE I+ L+ V+ +VE+G+ + D
Sbjct: 142 EIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDD 201
Query: 174 ---------YYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSH 224
Y+ FE+ L DT +Y+R+++ ++ ++ +YM KAE L E+ RV
Sbjct: 202 AFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQV 261
Query: 225 YLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGL 284
YLH S++ +L K + L+ + LE H+ LL DK EDL RM+ L S+I GL
Sbjct: 262 YLHESTQDELARKCEQVLIEKH----LEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGL 317
Query: 285 DPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVN 344
+ + + H+ +G A ++ +AA N +++V+ V+++H KY A V
Sbjct: 318 GELKKLLETHIHNQGLAAIEKCGEAALNDP-----------KMYVQTVLDVHKKYNALVM 366
Query: 345 DCFQNHTLFHKSLKEAFEVFCNKGV------AGSSSAELLATFCDNILKKGGSEKLSDEA 398
F N F +L +A F N + S S ELLA +CD++LKK S K +EA
Sbjct: 367 SAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKK--SSKNPEEA 424
Query: 399 -IEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQF 457
+E+ L +V+ + YI DKD+F +FY K LA+RL+ SA+DD E S+++KLKQ CG ++
Sbjct: 425 ELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEY 484
Query: 458 TSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAE 517
TSK++ M D+ ++++ F+++L+N+ + +D ++ VL++G WP +S LP+E
Sbjct: 485 TSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLD--LDFSIQVLSSGSWPFQQSCTFALPSE 542
Query: 518 MVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGK-FESRTTELIVTTYQASALLLFNSS 576
+ + + F FY ++ RKLTW+Y L L+ F++R T L +T+Q + LL +N+
Sbjct: 543 LERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYT-LQASTFQMAILLQYNTE 601
Query: 577 DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKIL---NKEPNTKTISPTDHFEFNSKFTD 633
D + ++ + D + ++L L +K +L N + + P + + +
Sbjct: 602 DAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKN 661
Query: 634 KMRRIKIPLPPXXXXXXXXXXXXXX----RRYAIDASIVRIMKSRKVLGHQQLVLECVEQ 689
K R+ I +P R+ I A+IVRIMK RKVL HQQL+ E + Q
Sbjct: 662 KKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQ 721
Query: 690 LGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 728
L FKP IKK I+ LI ++YLER + + YLA
Sbjct: 722 LSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 760
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 776
Score = 338 bits (868), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 220/685 (32%), Positives = 370/685 (54%), Gaps = 50/685 (7%)
Query: 74 DEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFI------ARRSLPPLNEVGLTCFRDLV 127
DE +L+ ++W +++ + L+ YL+R+++ R+ + + + L +RD +
Sbjct: 112 DESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCL 171
Query: 128 YTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMD---------YYEND 178
+ LN +V +AV+ LI++ER GE I+ L+ V+ +VE+G+ + D Y+
Sbjct: 172 FRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKES 231
Query: 179 FETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKV 238
FE+ L DT +Y+R+++ ++ ++ +YM KAE L E+ RV YLH S++ +L K
Sbjct: 232 FESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKC 291
Query: 239 QHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAE 298
+ L+ + LE H+ LL DK EDL RM+ L S+I GL + + + H+ +
Sbjct: 292 EQVLIEKH----LEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQ 347
Query: 299 GTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLK 358
G A ++ +AA N +++V+ V+++H KY A V F N F +L
Sbjct: 348 GLAAIEKCGEAALNDP-----------KMYVQTVLDVHKKYNALVMSAFNNDAGFVAALD 396
Query: 359 EAFEVFCNKGV------AGSSSAELLATFCDNILKKGGSEKLSDEA-IEEMLEKVVKLLA 411
+A F N + S S ELLA +CD++LKK S K +EA +E+ L +V+ +
Sbjct: 397 KACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKK--SSKNPEEAELEDTLNQVMVVFK 454
Query: 412 YISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLA 471
YI DKD+F +FY K LA+RL+ SA+DD E S+++KLKQ CG ++TSK++ M D+ ++
Sbjct: 455 YIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVS 514
Query: 472 RENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQT 531
++ F+++L+N+ + +D ++ VL++G WP +S LP+E+ + + F FY +
Sbjct: 515 KDLNEQFKKHLTNSEPLD--LDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYAS 572
Query: 532 KTKHRKLTWIYSLGTCNLLGK-FESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNL 590
+ RKLTW+Y L L+ F++R T L +T+Q + LL +N+ D + ++ +
Sbjct: 573 RHSGRKLTWLYQLSKGELVTNCFKNRYT-LQASTFQMAILLQYNTEDAYTVQQLTDSTQI 631
Query: 591 SDDDVVRLLHSLSCAKYKIL---NKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPXXX 647
D + ++L L +K +L N + + P + + +K R+ I +P
Sbjct: 632 KMDILAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTE 691
Query: 648 XXXXXXXXXXX----RRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKK 703
R+ I A+IVRIMK RKVL HQQL+ E + QL FKP IKK
Sbjct: 692 QKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKK 751
Query: 704 RIEDLITRDYLERDKSNPNMFRYLA 728
I+ LI ++YLER + + YLA
Sbjct: 752 CIDILIEKEYLERVDGEKDTYSYLA 776
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 366
Score = 206 bits (524), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 129/368 (35%), Positives = 208/368 (56%), Gaps = 14/368 (3%)
Query: 370 AGSSSAELLATFCDNILKKGGSEKLSDEA-IEEMLEKVVKLLAYISDKDLFAEFYRKKLA 428
+ S S ELLA +CD++LKK S K +EA +E+ L +V+ + YI DKD+F +FY K LA
Sbjct: 4 SSSKSPELLARYCDSLLKK--SSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLA 61
Query: 429 RRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNA 488
+RL+ SA+DD E S+++KLKQ CG ++TSK++ M D+ ++++ F+++L+N+
Sbjct: 62 KRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPL 121
Query: 489 NPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCN 548
+ +D ++ VL++G WP +S LP+E+ + + F FY ++ RKLTW+Y L
Sbjct: 122 D--LDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGE 179
Query: 549 LLGK-FESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKY 607
L+ F++R T L +T+Q + LL +N+ D + ++ + D + ++L L +K
Sbjct: 180 LVTNCFKNRYT-LQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKL 238
Query: 608 KIL---NKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPXXXXXXXXXXXXXX----RR 660
+L N + + P + + +K R+ I +P R+
Sbjct: 239 LVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRK 298
Query: 661 YAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSN 720
I A+IVRIMK RKVL HQQL+ E + QL FKP IKK I+ LI ++YLER
Sbjct: 299 LLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGE 358
Query: 721 PNMFRYLA 728
+ + YLA
Sbjct: 359 KDTYSYLA 366
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|C Chain C, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|E Chain E, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|G Chain G, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
Length = 368
Score = 199 bits (506), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 127/368 (34%), Positives = 206/368 (55%), Gaps = 14/368 (3%)
Query: 370 AGSSSAELLATFCDNILKKGGSEKLSDEA-IEEMLEKVVKLLAYISDKDLFAEFYRKKLA 428
+ S S E LA +CD++LKK S K +EA +E+ L +V++ I DKD+F +FY K LA
Sbjct: 6 SSSKSPEELARYCDSLLKK--SSKNPEEAELEDTLNQVMEKFKKIEDKDVFQKFYAKMLA 63
Query: 429 RRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNA 488
+RL+ SA+DD E S+++KLKQ CG ++TSK++ M D+ ++++ F+++L+N+
Sbjct: 64 KRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPL 123
Query: 489 NPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCN 548
+ +D ++ VL++G WP +S LP+E+ + + F FY ++ RKLTW+Y L
Sbjct: 124 D--LDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGE 181
Query: 549 LLGK-FESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKY 607
L+ F++R T L +T+Q + LL +N+ D + ++ + D + ++L L +K
Sbjct: 182 LVTNCFKNRYT-LQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKL 240
Query: 608 KIL---NKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPXXXXXXXXXXXXXX----RR 660
+L N + + P + + +K R+ I +P R+
Sbjct: 241 LVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRK 300
Query: 661 YAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSN 720
I A+IVRIMK RKVL HQQL+ E + QL FKP IKK I+ LI ++YLER
Sbjct: 301 LLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGE 360
Query: 721 PNMFRYLA 728
+ + YLA
Sbjct: 361 KDTYSYLA 368
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|C Chain C, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 282
Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 161/279 (57%), Gaps = 10/279 (3%)
Query: 370 AGSSSAELLATFCDNILKKGGSEKLSDEA-IEEMLEKVVKLLAYISDKDLFAEFYRKKLA 428
+ S S E LA +CD++LKK S K +EA +E+ L +V++ I DKD+F +FY K LA
Sbjct: 6 SSSKSPEELARYCDSLLKK--SSKNPEEAELEDTLNQVMEKFKKIEDKDVFQKFYAKMLA 63
Query: 429 RRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNA 488
+RL+ SA+DD E S+++KLKQ CG ++TSK++ M D+ ++++ F+++L+N+
Sbjct: 64 KRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPL 123
Query: 489 NPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCN 548
+ +D ++ VL++G WP +S LP+E+ + + F FY ++ RKLTW+Y L
Sbjct: 124 D--LDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGE 181
Query: 549 LLGK-FESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKY 607
L+ F++R T L +T+Q + LL +N+ D + ++ + D + ++L L +K
Sbjct: 182 LVTNCFKNRYT-LQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKL 240
Query: 608 KIL---NKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLP 643
+L N + + P + + +K R+ I +P
Sbjct: 241 LVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVP 279
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 396
Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 167/322 (51%), Gaps = 30/322 (9%)
Query: 60 NILLLVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFI------ARRSLP 113
N L +L + DE +L+ ++W +++ + L+ YL+R+++ R+ +
Sbjct: 84 NYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIY 143
Query: 114 PLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMD 173
+ + L +RD ++ LN +V +AV+ LI++ER GE I+ L+ V+ +VE+G+ + D
Sbjct: 144 EIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDD 203
Query: 174 ---------YYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSH 224
Y+ FE+ L DT +Y+R+++ ++ ++ +YM KAE L E+ RV
Sbjct: 204 AFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQV 263
Query: 225 YLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGL 284
YLH S++ +L K + L+ + LE H+ LL DK EDL RM+ L S+I GL
Sbjct: 264 YLHESTQDELARKCEQVLIEKH----LEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGL 319
Query: 285 DPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVN 344
+ + + H+ +G A ++ +AA N +++V+ V+++H KY A V
Sbjct: 320 GELKKLLETHIHNQGLAAIEKCGEAALNDP-----------KMYVQTVLDVHKKYNALVM 368
Query: 345 DCFQNHTLFHKSLKEAFEVFCN 366
F N F +L +A F N
Sbjct: 369 SAFNNDAGFVAALDKACGRFIN 390
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
Length = 410
Score = 138 bits (348), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 159/304 (52%), Gaps = 18/304 (5%)
Query: 78 LRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLV--YTELNGKV 135
L+ L + W++H+ + + Y+DR ++ + ++ + +GL FRD V Y + +
Sbjct: 102 LQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHL 161
Query: 136 RDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKA 195
R ++ +I +ER+GE +DR ++N + + +G+ YE DFE L+ +A ++ ++
Sbjct: 162 RQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMES 221
Query: 196 SNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEH 255
++ E+S Y+ K E + E +RV H L S+E +++ V+ EL+S + ++E E+
Sbjct: 222 QKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEMEN 281
Query: 256 SGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKA 315
SG +L++ K EDL M++LFS++P GL + ++ +G ALV +E+
Sbjct: 282 SGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALV--SEEGEGKNPV 339
Query: 316 EKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSA 375
+ R GL +L ++ ++ + F N LF +++ FE F N S S
Sbjct: 340 DYRQ--GLD---------DLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLN---LNSRSP 385
Query: 376 ELLA 379
E LA
Sbjct: 386 EYLA 389
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 388
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 159/304 (52%), Gaps = 18/304 (5%)
Query: 78 LRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLV--YTELNGKV 135
L+ L + W++H+ + + Y+DR ++ + ++ + +GL FRD V Y + +
Sbjct: 80 LQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHL 139
Query: 136 RDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKA 195
R ++ +I +ER+GE +DR ++N + + +G+ YE DFE L+ +A ++ ++
Sbjct: 140 RQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMES 199
Query: 196 SNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEH 255
++ E+S Y+ K E + E +RV H L S+E +++ V+ EL+S + ++E E+
Sbjct: 200 QKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEMEN 259
Query: 256 SGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKA 315
SG +L++ K EDL M++LFS++P GL + ++ +G ALV +E+
Sbjct: 260 SGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALV--SEEGEGKNPV 317
Query: 316 EKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSA 375
+ R GL +L ++ ++ + F N LF +++ FE F N S S
Sbjct: 318 DYRQ--GLD---------DLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLN---LNSRSP 363
Query: 376 ELLA 379
E LA
Sbjct: 364 EYLA 367
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 382
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 186/382 (48%), Gaps = 28/382 (7%)
Query: 372 SSSAELLATFCDNILKKGG-SEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARR 430
S E LA +CD +L+K S+KL+ E IE L++V+K L Y+ +KD+F +++ L RR
Sbjct: 4 SKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRR 63
Query: 431 LLFDKSANDDHERSILTKLKQ-QCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNAN 489
L+ D SA+ + E +++ L++ + +K+ M D+ ++ + +F+E NN A
Sbjct: 64 LILDISADSEIEENMVEWLREVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLAL 123
Query: 490 PGIDLTVTVLTTGFWP--SYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTC 547
P + + +L G W S K F ++LP E+ + EFY+ RKL W + +
Sbjct: 124 PADSVNIKILNAGAWSRSSEKVF-VSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLMSNG 182
Query: 548 NLLGKFESRTTELIVTTYQASALLLFNSSDR--LSYSEIMTQLNLSDDDVVRLLHSLSC- 604
+ K E +L VTT+Q + L +N R +S+ + L D ++ R L SL
Sbjct: 183 IITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAF 242
Query: 605 --AKYKILNKEPNTKTISPTDH-----FEFNSKFT-------DKMRRI----KIPLPPXX 646
K ++L EP SP D F N +F+ K +I ++ L
Sbjct: 243 PKLKRQVLLYEPQVN--SPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTER 300
Query: 647 XXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIE 706
R +I++IMK RK + + QL E VE L MF P K IK++IE
Sbjct: 301 MREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIE 360
Query: 707 DLITRDYLERDKSNPNMFRYLA 728
LI Y+ RD+S+ N F Y+A
Sbjct: 361 WLIEHKYIRRDESDINTFIYMA 382
>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|D Chain D, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 364
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 146/292 (50%), Gaps = 15/292 (5%)
Query: 77 MLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLV--YTELNGK 134
L+ L + W++H+ + Y DR ++ + ++ + +GL FRD V Y +
Sbjct: 84 FLQTLNQAWNDHQTAXVXIRDILXYXDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDH 143
Query: 135 VRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRK 194
+R ++ I +ER+GE +DR ++N +G+ YE DFE L+ +A ++ +
Sbjct: 144 LRQTLLDXIARERKGEVVDRGAIRNACQXLXILGLEGRSVYEEDFEAPFLEXSAEFFQXE 203
Query: 195 ASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKE 254
+ ++ E+S Y+ K E + E +RV H L S+E +++ V+ EL+S + ++E E
Sbjct: 204 SQKFLAENSASVYIKKVEARINEEIERVXHCLDKSTEEPIVKVVERELISKHXKTIVEXE 263
Query: 255 HSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKK 314
+SG L++ K EDL ++LFS++P GL ++ +G ALV +E+
Sbjct: 264 NSGLVHXLKNGKTEDLGCXYKLFSRVPNGLKTXCECXSSYLREQGKALV--SEEGEGKNP 321
Query: 315 AEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCN 366
+ R GL +L ++ ++ + F N LF +++ FE F N
Sbjct: 322 VDYRQ--GLD---------DLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLN 362
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|D Chain D, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 382
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 115/382 (30%), Positives = 181/382 (47%), Gaps = 28/382 (7%)
Query: 372 SSSAELLATFCDNILKKGG-SEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARR 430
S E LA +CD +L+K S+KL+ E IE L++V+K L Y+ +KD+F +++ L RR
Sbjct: 4 SKCPEELANYCDXLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFXRYHKAHLTRR 63
Query: 431 LLFDKSANDDHERSILTKLKQ-QCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNAN 489
L+ D SA+ + E + + L++ + +K+ D+ ++ + +F+E NN A
Sbjct: 64 LILDISADSEIEENXVEWLREVGXPADYVNKLARXFQDIKVSEDLNQAFKEXHKNNKLAL 123
Query: 490 PGIDLTVTVLTTGFWP--SYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTC 547
P + + +L G W S K F ++LP E+ + EFY+ RKL W +
Sbjct: 124 PADSVNIKILNAGAWSRSSEKVF-VSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLXSNG 182
Query: 548 NLLGKFESRTTELIVTTYQASALLLFNSSDR--LSYSEIMTQLNLSDDDVVRLLHSLSC- 604
+ K E +L VTT+Q + L +N R +S+ + L D ++ R L SL
Sbjct: 183 IITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAF 242
Query: 605 --AKYKILNKEPNTKTISPTDH-----FEFNSKFT-------DKMRRI----KIPLPPXX 646
K ++L EP SP D F N +F+ K +I ++ L
Sbjct: 243 PKLKRQVLLYEPQVN--SPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTER 300
Query: 647 XXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIE 706
R +I++I K RK + + QL E VE L F P K IK++IE
Sbjct: 301 XREEENEGIVQLRILRTQEAIIQIXKXRKKISNAQLQTELVEILKNXFLPQKKXIKEQIE 360
Query: 707 DLITRDYLERDKSNPNMFRYLA 728
LI Y+ RD+S+ N F Y A
Sbjct: 361 WLIEHKYIRRDESDINTFIYXA 382
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|C Chain C, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|D Chain D, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
Length = 354
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 158/295 (53%), Gaps = 27/295 (9%)
Query: 76 FMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRDLVYTE--LN 132
L+++ + W NH + + F +LDR ++ + S LP + ++GL FR + ++ +
Sbjct: 81 LFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQ 140
Query: 133 GKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYS 192
K D ++ LI++ER GE IDR+LL+++L + ++ + Y++ FE L++T Y+
Sbjct: 141 NKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQI-----YQDSFEQRFLEETNRLYA 195
Query: 193 RKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLE 252
+ + E P+Y+ + L+ E DR+ YL +++ L+ V+ +LL + +L+
Sbjct: 196 AEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATVEKQLLGEHLTAILQ 255
Query: 253 KEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASN 312
K G + LL +++++DLS +++LFS++ G+ + + +++ A G+ +V E
Sbjct: 256 K---GLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINPE----- 307
Query: 313 KKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNK 367
+++ +++ + DK ++ CF + F ++KEAFE F NK
Sbjct: 308 -----------KDKTMRQELDDFKDKVDHIIDICFLKNEKFINAMKEAFETFINK 351
>pdb|2WZK|A Chain A, Structure Of The Cul5 N-Terminal Domain At 2.05a
Resolution
Length = 391
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 121/254 (47%), Gaps = 16/254 (6%)
Query: 120 LTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMG---QMDYYE 176
L + + +++ + +++D+ + L+ ER GE D L+ V + +V + ++ Y
Sbjct: 140 LDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYR 199
Query: 177 NDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLE 236
++FE A L T +Y +A +++ ++ +YM A+ LK E+ R YL + E +E
Sbjct: 200 DNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETRRECNSVE 259
Query: 237 KVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVT 296
+ ++ E + C +++ ++ E L MF L K+P G++P+ ++H+
Sbjct: 260 ALMECCVNALVTSFKETILAECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHII 319
Query: 297 AEGTA-LVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHK 355
+ G A +V AE ++ +EK + ++ L +++ V + FQ+ F
Sbjct: 320 SAGLADMVAAAETITTD--SEK----------YREQLDTLFNRFSKLVKEAFQDDPRFLT 367
Query: 356 SLKEAFEVFCNKGV 369
+ +A++ N
Sbjct: 368 ARDKAYKAVVNDAT 381
>pdb|2DO7|A Chain A, Solution Structure Of The Winged Helix-Turn-Helix Motif Of
Human Cul-4b
Length = 101
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 659 RRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 718
R+Y IDA+IVRIMK RK L H LV E QL KP +KKRIE LI RDY+ERDK
Sbjct: 28 RQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKP--ADLKKRIESLIDRDYMERDK 85
Query: 719 SNPNMFRYLA 728
NPN + Y+A
Sbjct: 86 ENPNQYNYIA 95
>pdb|3TDU|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDU|D Chain D, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDZ|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
pdb|3TDZ|D Chain D, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
Length = 77
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 45/70 (64%)
Query: 659 RRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 718
R+ I A+IVRIMK RKVL HQQL+ E + QL FKP IKK I+ LI ++YLER
Sbjct: 8 RKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVD 67
Query: 719 SNPNMFRYLA 728
+ + YLA
Sbjct: 68 GEKDTYSYLA 77
>pdb|1IUY|A Chain A, Solution Structure Of The Cullin-3 Homologue
Length = 92
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 45/70 (64%)
Query: 659 RRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 718
R++ I+A+IVRIMKSRK + H LV E +QL F P IKKRIE LI R+YL R
Sbjct: 23 RKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTP 82
Query: 719 SNPNMFRYLA 728
+ ++ Y+A
Sbjct: 83 EDRKVYTYVA 92
>pdb|3O6B|B Chain B, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|D Chain D, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|F Chain F, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|H Chain H, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|J Chain J, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
Length = 76
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 659 RRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 718
R+ ++A IVRIMK+++ L H LV EC+ Q + F +K+ I+ LI + YL+R
Sbjct: 8 RQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGD 67
Query: 719 SNPNMFRYLA 728
+ + YLA
Sbjct: 68 DGES-YAYLA 76
>pdb|3O2P|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb)
Length = 88
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 659 RRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 718
R+ ++A IVRIMK+++ L H LV EC+ Q + F +K+ I+ LI + YL+R
Sbjct: 20 RQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGD 79
Query: 719 SNPNMFRYLA 728
+ + YLA
Sbjct: 80 DGES-YAYLA 88
>pdb|3CW1|A Chain A, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|H Chain H, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|I Chain I, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|J Chain J, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 174
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 672 KSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNP 721
KS K+L H + C+ Q GR+F FKA K + +LI D E K P
Sbjct: 5 KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHM-NLILCDCDEFRKIKP 53
>pdb|3PGW|B Chain B, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|Q Chain Q, Crystal Structure Of Human U1 Snrnp
Length = 231
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 672 KSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNP 721
KS K+L H + C+ Q GR+F FKA K + +LI D E K P
Sbjct: 5 KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHM-NLILCDCDEFRKIKP 53
>pdb|2QJ3|A Chain A, Mycobacterium Tuberculosis Fabd
pdb|2QJ3|B Chain B, Mycobacterium Tuberculosis Fabd
Length = 322
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 19/96 (19%)
Query: 254 EHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEG--TALVKLAEDAAS 311
E +G A+L D+ E LSR+ +L L P + + A G TAL KLAED +
Sbjct: 147 EPTGMSAVLGGDETEVLSRLEQLD------LVPANRNAAGQIVAAGRLTALEKLAEDPPA 200
Query: 312 NKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCF 347
+ V G H +++A D F
Sbjct: 201 KARVRALGVAG-----------AFHTEFMAPALDGF 225
>pdb|2QC3|A Chain A, Crystal Structure Of Mcat From Mycobacterium Tuberculosis
Length = 303
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 19/96 (19%)
Query: 254 EHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEG--TALVKLAEDAAS 311
E +G A+L D+ E LSR+ +L L P + + A G TAL KLAED +
Sbjct: 128 EPTGMSAVLGGDETEVLSRLEQL------DLVPANRNAAGQIVAAGRLTALEKLAEDPPA 181
Query: 312 NKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCF 347
+ V G H +++A D F
Sbjct: 182 KARVRALGVAG-----------AFHTEFMAPALDGF 206
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp)
From Human Epithelial Cells
Length = 148
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 354 HKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEML 403
+ ++EAF VF G S+AEL +++ + G EKLSDE ++EM+
Sbjct: 82 EEEIREAFRVFDKDGNGFVSAAELR-----HVMTRLG-EKLSDEEVDEMI 125
>pdb|1QS7|A Chain A, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
pdb|1QS7|C Chain C, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 145
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 355 KSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEK 405
+ LKEAF VF G S+AEL +++ G EKL+DE ++EM+ +
Sbjct: 80 EELKEAFRVFDKDGNGFISAAEL-----RHVMTNLG-EKLTDEEVDEMIRE 124
>pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 355 KSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEK 405
+ LKEAF VF G S+AEL +++ G EKL+DE ++EM+ +
Sbjct: 83 EKLKEAFRVFDKDGNGFISAAEL-----RHVMTNLG-EKLTDEEVDEMIRE 127
>pdb|1QTX|A Chain A, The 1.65 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 29.3 bits (64), Expect = 8.6, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 355 KSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEK 405
+ LKEAF VF G S+AEL +++ G EKL+DE ++EM+ +
Sbjct: 83 EELKEAFRVFDKDGNGFISAAEL-----RHVMTNLG-EKLTDEEVDEMIRE 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,219,635
Number of Sequences: 62578
Number of extensions: 819184
Number of successful extensions: 2618
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2512
Number of HSP's gapped (non-prelim): 39
length of query: 728
length of database: 14,973,337
effective HSP length: 106
effective length of query: 622
effective length of database: 8,340,069
effective search space: 5187522918
effective search space used: 5187522918
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)