Query 004841
Match_columns 728
No_of_seqs 233 out of 1080
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 07:30:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ldj_A Cullin homolog 1, CUL-1 100.0 1E-133 5E-138 1178.0 67.5 692 11-728 1-760 (760)
2 2hye_C Cullin-4A, CUL-4A; beta 100.0 6E-131 2E-135 1155.4 66.5 683 9-728 57-759 (759)
3 3dpl_C Cullin-5; ubiquitin, NE 100.0 3E-81 1E-85 677.1 33.4 357 371-728 3-382 (382)
4 4ap2_B Cullin-3, CUL-3; ubiqui 100.0 1.7E-64 5.9E-69 552.9 37.0 355 9-386 28-396 (410)
5 4eoz_B Cullin-3, CUL-3; E3 ubi 100.0 4.1E-62 1.4E-66 527.7 28.5 341 8-368 10-364 (364)
6 2wzk_A Cullin-5, CUL-5; UBL co 100.0 9.5E-60 3.2E-64 513.7 34.9 343 5-368 9-380 (391)
7 4a64_A Cullin-4B, CUL4B, CUL-4 100.0 2.6E-59 8.8E-64 504.0 35.4 330 8-368 7-352 (354)
8 3o2p_E Cell division control p 99.9 4.7E-27 1.6E-31 194.3 5.2 82 646-728 7-88 (88)
9 3tdu_C Cullin-1, CUL-1; E2:E3, 99.9 3.3E-27 1.1E-31 190.7 2.4 75 654-728 3-77 (77)
10 1iuy_A Cullin-3 homologue; win 99.9 6.9E-27 2.4E-31 195.7 -0.1 82 647-728 11-92 (92)
11 2do7_A Cullin-4B, CUL-4B; heli 99.9 3.1E-26 1.1E-30 194.3 3.2 81 646-728 15-95 (101)
12 2jt1_A PEFI protein; solution 85.3 0.73 2.5E-05 36.7 3.8 41 577-619 23-63 (77)
13 1wi9_A Protein C20ORF116 homol 84.8 0.35 1.2E-05 37.5 1.6 54 667-728 12-65 (72)
14 3cuo_A Uncharacterized HTH-typ 84.5 1.2 4E-05 36.8 5.1 50 563-614 23-72 (99)
15 1p4x_A Staphylococcal accessor 84.1 1 3.5E-05 44.9 5.2 52 561-614 31-84 (250)
16 3lmm_A Uncharacterized protein 83.8 0.45 1.5E-05 53.7 2.7 135 563-721 429-567 (583)
17 2dk5_A DNA-directed RNA polyme 81.9 1.2 4.1E-05 36.8 3.9 51 560-612 16-68 (91)
18 3tgn_A ADC operon repressor AD 81.0 2 6.7E-05 38.3 5.5 52 560-614 34-85 (146)
19 1qgp_A Protein (double strande 80.5 1.7 5.9E-05 34.5 4.3 46 567-614 17-65 (77)
20 1y0u_A Arsenical resistance op 80.3 2.7 9.4E-05 34.6 5.7 56 563-630 30-85 (96)
21 3hsr_A HTH-type transcriptiona 80.3 1.5 5E-05 39.0 4.3 52 561-614 33-84 (140)
22 3g3z_A NMB1585, transcriptiona 79.8 1.8 6E-05 38.6 4.7 51 562-614 29-79 (145)
23 1sfx_A Conserved hypothetical 79.5 1.5 5.1E-05 36.7 3.9 50 562-613 18-67 (109)
24 3jth_A Transcription activator 79.2 2.7 9.1E-05 34.8 5.3 50 563-615 22-71 (98)
25 2htj_A P fimbrial regulatory p 79.1 3.5 0.00012 32.8 5.8 44 568-613 4-47 (81)
26 1sfu_A 34L protein; protein/Z- 78.2 3.8 0.00013 32.2 5.4 44 569-614 20-63 (75)
27 3cdh_A Transcriptional regulat 77.8 3 0.0001 37.5 5.7 50 562-613 41-90 (155)
28 3ech_A MEXR, multidrug resista 77.7 1.5 5.1E-05 39.0 3.5 52 561-614 34-85 (142)
29 3nrv_A Putative transcriptiona 77.5 2.2 7.6E-05 38.0 4.6 52 561-614 37-88 (148)
30 2frh_A SARA, staphylococcal ac 76.5 1.9 6.6E-05 37.7 3.8 52 561-614 34-87 (127)
31 4hbl_A Transcriptional regulat 76.3 1.9 6.6E-05 38.7 3.9 51 562-614 39-89 (149)
32 2fbh_A Transcriptional regulat 76.3 2.5 8.7E-05 37.4 4.7 51 562-614 35-86 (146)
33 3r0a_A Putative transcriptiona 76.2 2.1 7.3E-05 37.3 4.0 51 561-613 23-75 (123)
34 2gxg_A 146AA long hypothetical 76.1 3.3 0.00011 36.7 5.4 49 562-613 35-83 (146)
35 3oop_A LIN2960 protein; protei 75.7 1.6 5.4E-05 38.8 3.1 51 562-614 35-85 (143)
36 2fu4_A Ferric uptake regulatio 75.3 2.9 0.0001 33.4 4.3 51 561-613 14-71 (83)
37 3bpv_A Transcriptional regulat 75.1 2 6.9E-05 37.7 3.6 50 562-613 27-76 (138)
38 2qww_A Transcriptional regulat 75.0 2.7 9.2E-05 37.8 4.5 49 562-612 39-87 (154)
39 1xn7_A Hypothetical protein YH 75.0 2.5 8.7E-05 33.6 3.7 43 569-613 7-49 (78)
40 1xmk_A Double-stranded RNA-spe 74.7 3.5 0.00012 32.9 4.4 49 564-614 11-60 (79)
41 1xn7_A Hypothetical protein YH 74.4 1.2 4.2E-05 35.5 1.7 43 667-717 7-49 (78)
42 1oyi_A Double-stranded RNA-bin 74.4 3.5 0.00012 33.1 4.4 44 567-613 20-63 (82)
43 3eco_A MEPR; mutlidrug efflux 74.4 2.4 8.2E-05 37.3 3.9 51 562-614 29-81 (139)
44 1tbx_A ORF F-93, hypothetical 73.9 2.1 7.1E-05 35.5 3.2 51 561-613 5-59 (99)
45 3bj6_A Transcriptional regulat 73.8 3 0.0001 37.3 4.5 51 562-614 38-88 (152)
46 2d1h_A ST1889, 109AA long hypo 73.8 2.5 8.5E-05 35.3 3.7 51 562-614 19-70 (109)
47 2k02_A Ferrous iron transport 73.7 2.7 9.2E-05 34.3 3.6 43 569-613 7-49 (87)
48 3bro_A Transcriptional regulat 73.7 3.2 0.00011 36.5 4.6 51 562-614 32-84 (141)
49 1jgs_A Multiple antibiotic res 73.4 2.5 8.4E-05 37.2 3.7 50 562-613 32-81 (138)
50 2fa5_A Transcriptional regulat 73.4 3.2 0.00011 37.6 4.6 51 561-613 46-96 (162)
51 3pqk_A Biofilm growth-associat 73.3 6.3 0.00021 32.7 6.1 59 564-629 23-81 (102)
52 1qbj_A Protein (double-strande 73.1 3.4 0.00012 33.2 4.1 57 566-629 12-71 (81)
53 3k0l_A Repressor protein; heli 73.1 2.3 8E-05 38.7 3.6 51 562-614 44-94 (162)
54 3e6m_A MARR family transcripti 71.9 2.5 8.5E-05 38.5 3.4 51 562-614 51-101 (161)
55 1u2w_A CADC repressor, cadmium 71.5 4 0.00014 35.4 4.5 50 563-614 41-90 (122)
56 3bdd_A Regulatory protein MARR 71.4 3 0.0001 36.7 3.8 51 561-613 28-78 (142)
57 2pex_A Transcriptional regulat 70.7 3.3 0.00011 37.2 4.0 50 562-613 45-94 (153)
58 3bja_A Transcriptional regulat 70.7 2 6.8E-05 37.7 2.4 50 562-613 31-80 (139)
59 2nnn_A Probable transcriptiona 70.5 2.5 8.4E-05 37.2 3.0 51 561-613 35-85 (140)
60 3deu_A Transcriptional regulat 70.4 3.5 0.00012 37.8 4.2 51 562-614 51-102 (166)
61 2nyx_A Probable transcriptiona 70.2 2.8 9.5E-05 38.5 3.4 51 561-613 42-92 (168)
62 1p6r_A Penicillinase repressor 70.0 3.3 0.00011 32.9 3.4 52 561-614 6-61 (82)
63 2hr3_A Probable transcriptiona 69.9 3.5 0.00012 36.6 3.9 52 561-614 32-84 (147)
64 3cjn_A Transcriptional regulat 69.8 3.3 0.00011 37.5 3.8 50 562-613 50-99 (162)
65 2a61_A Transcriptional regulat 69.6 2.6 8.9E-05 37.3 3.0 50 562-613 31-80 (145)
66 1lj9_A Transcriptional regulat 69.6 2.8 9.7E-05 37.1 3.2 50 562-613 27-76 (144)
67 1ku9_A Hypothetical protein MJ 69.3 5.4 0.00018 35.3 5.1 50 562-613 24-74 (152)
68 2k02_A Ferrous iron transport 69.0 1.4 4.9E-05 35.9 1.0 44 667-718 7-50 (87)
69 2rdp_A Putative transcriptiona 68.8 3.4 0.00012 36.8 3.7 50 562-613 40-89 (150)
70 2eth_A Transcriptional regulat 68.7 3.6 0.00012 37.0 3.8 50 562-613 42-91 (154)
71 2bv6_A MGRA, HTH-type transcri 68.4 2.4 8.3E-05 37.5 2.5 50 562-613 35-84 (142)
72 1s3j_A YUSO protein; structura 68.3 2.9 9.9E-05 37.5 3.0 51 561-613 34-84 (155)
73 1z91_A Organic hydroperoxide r 68.1 3.2 0.00011 36.8 3.3 51 562-614 38-88 (147)
74 3s2w_A Transcriptional regulat 68.0 2.4 8.4E-05 38.4 2.5 51 562-614 48-98 (159)
75 2k4b_A Transcriptional regulat 67.9 2.9 0.0001 35.0 2.7 60 664-728 37-96 (99)
76 2v79_A DNA replication protein 67.7 3.7 0.00013 36.5 3.5 28 689-716 56-83 (135)
77 3fm5_A Transcriptional regulat 67.6 4.5 0.00015 36.1 4.2 51 562-614 37-88 (150)
78 3jw4_A Transcriptional regulat 67.4 2.3 7.9E-05 38.0 2.1 51 562-614 39-91 (148)
79 2fbi_A Probable transcriptiona 67.2 2.7 9.3E-05 37.0 2.6 50 562-613 34-83 (142)
80 1p6r_A Penicillinase repressor 66.9 2.4 8.2E-05 33.8 1.9 58 665-727 12-69 (82)
81 2l02_A Uncharacterized protein 66.8 8.9 0.00031 30.6 5.0 37 568-604 12-48 (82)
82 2oqg_A Possible transcriptiona 66.6 3.8 0.00013 34.7 3.3 48 563-613 20-67 (114)
83 3f3x_A Transcriptional regulat 66.5 3.3 0.00011 36.7 3.0 50 561-613 34-83 (144)
84 1r1u_A CZRA, repressor protein 66.5 5 0.00017 33.7 4.0 48 563-613 25-72 (106)
85 2v79_A DNA replication protein 66.4 4.3 0.00015 36.1 3.7 52 559-612 27-83 (135)
86 4b8x_A SCO5413, possible MARR- 66.2 3.9 0.00013 36.7 3.5 51 562-614 33-85 (147)
87 1bja_A Transcription regulator 66.2 5.9 0.0002 32.8 4.1 50 560-611 12-62 (95)
88 2e1c_A Putative HTH-type trans 66.0 5.5 0.00019 36.9 4.5 66 542-612 8-73 (171)
89 3lwf_A LIN1550 protein, putati 65.6 13 0.00045 33.9 6.9 58 565-629 30-88 (159)
90 2heo_A Z-DNA binding protein 1 64.8 3.7 0.00013 31.5 2.5 45 565-611 11-56 (67)
91 1ub9_A Hypothetical protein PH 64.6 4.4 0.00015 33.3 3.2 48 563-612 15-62 (100)
92 4aik_A Transcriptional regulat 64.5 8.1 0.00028 34.7 5.3 51 562-614 29-80 (151)
93 3nqo_A MARR-family transcripti 64.4 4.6 0.00016 37.9 3.7 51 562-614 39-91 (189)
94 3t8r_A Staphylococcus aureus C 64.2 14 0.00046 33.1 6.6 56 567-629 16-72 (143)
95 3kp7_A Transcriptional regulat 64.2 3.7 0.00013 36.8 2.9 49 561-612 35-83 (151)
96 2pn6_A ST1022, 150AA long hypo 64.2 9.1 0.00031 34.3 5.5 48 563-612 2-49 (150)
97 1bby_A RAP30; average structur 63.9 12 0.00039 29.0 5.1 57 566-632 10-66 (69)
98 3k69_A Putative transcription 62.8 8 0.00027 35.5 4.9 45 566-612 16-60 (162)
99 3boq_A Transcriptional regulat 62.5 3.7 0.00012 37.1 2.5 51 562-614 45-96 (160)
100 2fxa_A Protease production reg 62.2 4.4 0.00015 38.8 3.2 51 562-614 46-96 (207)
101 2xub_A DNA-directed RNA polyme 62.1 6.1 0.00021 43.9 4.7 129 575-719 30-162 (534)
102 2vn2_A DNAD, chromosome replic 61.6 7.8 0.00027 33.9 4.4 53 560-614 28-85 (128)
103 2kko_A Possible transcriptiona 61.5 4.1 0.00014 34.5 2.5 45 566-613 27-71 (108)
104 2w25_A Probable transcriptiona 60.7 8.2 0.00028 34.6 4.5 49 562-612 5-53 (150)
105 2wte_A CSA3; antiviral protein 59.6 6.4 0.00022 38.8 3.9 50 562-613 150-199 (244)
106 2y75_A HTH-type transcriptiona 59.3 19 0.00065 31.2 6.6 47 576-629 24-70 (129)
107 3r4k_A Transcriptional regulat 59.2 8.5 0.00029 38.3 4.8 56 567-630 9-65 (260)
108 2xrn_A HTH-type transcriptiona 57.4 12 0.0004 36.7 5.4 56 567-630 9-65 (241)
109 2cfx_A HTH-type transcriptiona 57.3 10 0.00036 33.7 4.6 49 562-612 3-51 (144)
110 1fse_A GERE; helix-turn-helix 56.4 17 0.00059 27.7 5.2 41 561-603 11-51 (74)
111 1i1g_A Transcriptional regulat 55.6 8.6 0.00029 33.9 3.7 48 563-612 3-50 (141)
112 2obp_A Putative DNA-binding pr 55.4 11 0.00036 31.3 3.8 50 561-612 13-68 (96)
113 3ulq_B Transcriptional regulat 55.2 16 0.00056 29.6 5.1 42 560-603 28-69 (90)
114 1sd4_A Penicillinase repressor 55.2 6.4 0.00022 34.0 2.7 51 561-613 7-61 (126)
115 2ia0_A Putative HTH-type trans 55.2 11 0.00036 34.9 4.3 51 559-611 12-62 (171)
116 2g9w_A Conserved hypothetical 55.0 12 0.00041 33.0 4.6 50 562-613 7-61 (138)
117 2p5k_A Arginine repressor; DNA 54.8 14 0.00049 27.3 4.4 37 566-602 7-48 (64)
118 2jsc_A Transcriptional regulat 54.6 11 0.00039 32.2 4.2 49 563-614 20-68 (118)
119 2fu4_A Ferric uptake regulatio 54.5 8.4 0.00029 30.5 3.1 59 665-726 20-80 (83)
120 1ylf_A RRF2 family protein; st 53.8 14 0.00047 33.2 4.8 46 566-613 18-63 (149)
121 1okr_A MECI, methicillin resis 53.6 5.1 0.00017 34.5 1.7 51 561-613 7-61 (123)
122 2cg4_A Regulatory protein ASNC 53.5 12 0.0004 33.7 4.3 48 562-611 6-53 (152)
123 2cyy_A Putative HTH-type trans 53.0 13 0.00043 33.4 4.4 49 562-612 5-53 (151)
124 1je8_A Nitrate/nitrite respons 52.9 20 0.00067 28.4 5.1 41 561-603 21-61 (82)
125 1r1t_A Transcriptional repress 52.8 16 0.00054 31.6 4.8 47 564-613 46-92 (122)
126 4fx0_A Probable transcriptiona 52.3 16 0.00055 32.6 5.0 47 562-610 31-82 (148)
127 1tbx_A ORF F-93, hypothetical 51.9 6.7 0.00023 32.3 2.2 53 667-723 13-65 (99)
128 2qlz_A Transcription factor PF 51.6 13 0.00046 36.2 4.6 152 564-719 12-213 (232)
129 3u2r_A Regulatory protein MARR 50.9 5.5 0.00019 36.4 1.6 51 562-614 44-96 (168)
130 2p5v_A Transcriptional regulat 50.5 15 0.00051 33.4 4.5 49 562-612 8-56 (162)
131 2vn2_A DNAD, chromosome replic 49.5 8.4 0.00029 33.7 2.5 27 692-718 59-85 (128)
132 1hsj_A Fusion protein consisti 49.5 12 0.00042 40.6 4.4 52 561-614 401-454 (487)
133 1p4x_A Staphylococcal accessor 49.4 14 0.00047 36.5 4.4 52 561-614 155-208 (250)
134 1xd7_A YWNA; structural genomi 49.3 20 0.0007 31.9 5.2 44 566-613 13-56 (145)
135 2dbb_A Putative HTH-type trans 49.3 16 0.00056 32.6 4.6 48 562-611 7-54 (151)
136 3mq0_A Transcriptional repress 49.0 12 0.0004 37.6 3.9 45 568-614 34-79 (275)
137 2zkz_A Transcriptional repress 48.7 11 0.00038 31.1 3.0 47 563-612 26-72 (99)
138 2lkp_A Transcriptional regulat 48.6 17 0.00059 30.9 4.4 46 564-612 32-77 (119)
139 3f6o_A Probable transcriptiona 48.4 13 0.00043 31.9 3.4 49 563-614 17-65 (118)
140 1q1h_A TFE, transcription fact 48.2 15 0.0005 30.9 3.8 38 574-613 29-66 (110)
141 2yu3_A DNA-directed RNA polyme 47.6 18 0.00061 29.9 4.0 51 561-613 34-86 (95)
142 2l01_A Uncharacterized protein 47.6 24 0.00083 27.7 4.5 38 567-604 13-51 (77)
143 1x3u_A Transcriptional regulat 47.4 25 0.00086 27.1 4.9 40 562-603 17-56 (79)
144 3c57_A Two component transcrip 46.7 22 0.00075 29.1 4.6 41 561-603 27-67 (95)
145 2pg4_A Uncharacterized protein 46.5 14 0.00048 30.0 3.3 44 566-611 17-62 (95)
146 1mkm_A ICLR transcriptional re 46.3 23 0.00078 34.8 5.4 54 567-629 11-65 (249)
147 1qgp_A Protein (double strande 45.9 5.4 0.00018 31.6 0.6 51 666-724 18-71 (77)
148 2o0y_A Transcriptional regulat 45.7 19 0.00064 35.7 4.7 45 568-614 27-72 (260)
149 3i4p_A Transcriptional regulat 45.7 28 0.00095 31.6 5.6 45 565-611 4-48 (162)
150 3r0a_A Putative transcriptiona 45.2 8.9 0.0003 33.2 1.9 58 662-727 26-89 (123)
151 1sd4_A Penicillinase repressor 44.9 12 0.00041 32.1 2.8 59 664-727 12-70 (126)
152 2k4b_A Transcriptional regulat 44.6 4.1 0.00014 34.1 -0.3 52 561-614 32-87 (99)
153 2htj_A P fimbrial regulatory p 42.9 11 0.00036 29.9 1.9 43 667-717 5-47 (81)
154 3f8b_A Transcriptional regulat 41.5 23 0.00077 30.3 4.0 59 658-717 8-66 (116)
155 1okr_A MECI, methicillin resis 41.4 8.4 0.00029 33.0 1.2 56 667-727 15-70 (123)
156 2jt1_A PEFI protein; solution 41.3 5.9 0.0002 31.4 0.1 38 675-720 23-60 (77)
157 3f6v_A Possible transcriptiona 40.9 18 0.00061 32.6 3.3 48 563-613 57-104 (151)
158 2g9w_A Conserved hypothetical 40.4 22 0.00075 31.2 3.9 58 664-726 11-69 (138)
159 3b73_A PHIH1 repressor-like pr 40.2 22 0.00075 30.3 3.6 50 562-613 11-62 (111)
160 1oks_A RNA polymerase alpha su 40.0 32 0.0011 24.6 3.6 44 426-469 5-48 (56)
161 2p7v_B Sigma-70, RNA polymeras 39.9 46 0.0016 24.9 5.2 41 562-602 6-49 (68)
162 1qbj_A Protein (double-strande 39.8 9.5 0.00032 30.5 1.1 52 665-724 13-67 (81)
163 2lnb_A Z-DNA-binding protein 1 39.7 17 0.0006 28.5 2.5 36 568-603 23-59 (80)
164 2x4h_A Hypothetical protein SS 39.4 37 0.0013 29.4 5.3 50 561-612 10-63 (139)
165 1on2_A Transcriptional regulat 39.3 19 0.00066 31.5 3.3 40 572-613 16-55 (142)
166 2ia2_A Putative transcriptiona 39.2 30 0.001 34.3 5.0 55 567-631 24-79 (265)
167 2g7u_A Transcriptional regulat 38.9 34 0.0012 33.6 5.4 55 566-630 16-71 (257)
168 2fbk_A Transcriptional regulat 38.0 8.7 0.0003 35.6 0.8 50 562-613 67-119 (181)
169 2qvo_A Uncharacterized protein 37.8 17 0.00057 29.6 2.4 47 562-610 10-60 (95)
170 2x48_A CAG38821; archeal virus 37.8 82 0.0028 22.2 6.1 24 577-600 30-53 (55)
171 3omy_A Protein TRAM; DNA bindi 37.3 28 0.00097 24.9 3.1 42 131-176 8-49 (52)
172 1tc3_C Protein (TC3 transposas 37.2 48 0.0016 22.3 4.6 33 567-601 12-44 (51)
173 1tty_A Sigma-A, RNA polymerase 36.9 46 0.0016 26.5 4.9 40 563-602 20-62 (87)
174 3kp7_A Transcriptional regulat 36.8 7.9 0.00027 34.5 0.3 51 664-723 40-94 (151)
175 2jpc_A SSRB; DNA binding prote 36.8 31 0.0011 25.1 3.6 35 567-603 4-38 (61)
176 2hzt_A Putative HTH-type trans 36.4 41 0.0014 27.9 4.8 46 565-613 15-61 (107)
177 1uly_A Hypothetical protein PH 36.1 44 0.0015 31.3 5.4 48 563-613 19-66 (192)
178 2rnj_A Response regulator prot 36.1 23 0.00079 28.6 3.0 40 562-603 30-69 (91)
179 3cuo_A Uncharacterized HTH-typ 36.0 12 0.00043 30.3 1.4 54 663-724 25-78 (99)
180 2frh_A SARA, staphylococcal ac 35.9 16 0.00055 31.6 2.1 40 675-722 52-93 (127)
181 1z7u_A Hypothetical protein EF 35.8 22 0.00074 30.0 2.9 47 564-613 22-69 (112)
182 1nkl_A NK-lysin; saposin fold, 34.8 1.1E+02 0.0037 23.8 6.8 59 375-437 7-66 (78)
183 3t72_q RNA polymerase sigma fa 33.8 51 0.0017 27.3 4.8 39 562-600 20-61 (99)
184 4a0z_A Transcription factor FA 33.7 35 0.0012 32.0 4.3 40 565-604 13-52 (190)
185 1ku3_A Sigma factor SIGA; heli 32.0 62 0.0021 24.6 4.8 40 563-602 12-54 (73)
186 3to7_A Histone acetyltransfera 31.9 36 0.0012 33.6 4.0 37 566-602 195-232 (276)
187 1p4w_A RCSB; solution structur 31.2 48 0.0017 27.3 4.3 41 561-603 34-74 (99)
188 3df8_A Possible HXLR family tr 30.7 47 0.0016 27.9 4.2 47 564-613 27-76 (111)
189 1dp3_A TRAM protein; helix-loo 30.6 17 0.00056 26.4 1.0 45 131-178 7-52 (55)
190 2qlz_A Transcription factor PF 30.5 33 0.0011 33.3 3.6 45 566-613 167-211 (232)
191 4a5n_A Uncharacterized HTH-typ 30.3 56 0.0019 28.5 4.7 46 565-613 27-73 (131)
192 3i4p_A Transcriptional regulat 30.2 19 0.00064 32.8 1.6 47 663-717 4-50 (162)
193 2f2e_A PA1607; transcription f 30.1 56 0.0019 28.9 4.8 47 565-614 25-71 (146)
194 3cuq_B Vacuolar protein-sortin 29.6 85 0.0029 30.1 6.3 84 512-613 113-201 (218)
195 2fsw_A PG_0823 protein; alpha- 29.2 46 0.0016 27.6 3.8 45 566-613 27-72 (107)
196 1l9l_A Granulysin; saposin fol 29.2 1E+02 0.0035 23.9 5.5 57 375-436 7-65 (74)
197 2eth_A Transcriptional regulat 28.9 26 0.00088 31.1 2.4 52 664-723 46-99 (154)
198 1yyv_A Putative transcriptiona 28.9 54 0.0019 28.5 4.4 48 563-613 34-82 (131)
199 3hug_A RNA polymerase sigma fa 28.7 69 0.0024 25.6 4.8 39 562-602 38-77 (92)
200 2dk5_A DNA-directed RNA polyme 28.5 35 0.0012 27.8 2.8 34 675-716 35-68 (91)
201 3cdh_A Transcriptional regulat 28.3 27 0.00092 30.9 2.4 49 662-718 43-91 (155)
202 2o8x_A Probable RNA polymerase 28.3 77 0.0026 23.4 4.8 39 562-602 16-55 (70)
203 3tgn_A ADC operon repressor AD 26.6 22 0.00074 31.1 1.4 43 667-718 43-85 (146)
204 2ozu_A Histone acetyltransfera 26.4 45 0.0016 33.0 3.7 28 575-602 211-238 (284)
205 1sfx_A Conserved hypothetical 26.3 21 0.00072 29.2 1.2 48 663-718 21-68 (109)
206 2pg4_A Uncharacterized protein 26.1 12 0.0004 30.5 -0.5 45 672-724 25-71 (95)
207 3hsr_A HTH-type transcriptiona 26.0 19 0.00064 31.5 0.8 48 663-718 37-84 (140)
208 2p4w_A Transcriptional regulat 26.0 45 0.0016 31.5 3.6 48 563-613 14-61 (202)
209 3on0_A Protein TRAM; DNA bindi 26.0 1.1E+02 0.0038 26.1 5.5 38 131-169 8-45 (127)
210 2qww_A Transcriptional regulat 25.9 30 0.001 30.5 2.2 45 664-716 43-87 (154)
211 3bja_A Transcriptional regulat 25.7 34 0.0012 29.4 2.5 49 667-723 38-88 (139)
212 1xma_A Predicted transcription 25.6 38 0.0013 30.2 2.8 57 661-718 40-96 (145)
213 2fbh_A Transcriptional regulat 25.2 29 0.00098 30.2 1.9 47 664-718 39-86 (146)
214 2ou2_A Histone acetyltransfera 25.0 59 0.002 32.2 4.2 26 578-603 212-237 (280)
215 2gxg_A 146AA long hypothetical 23.9 51 0.0017 28.5 3.4 46 664-718 39-84 (146)
216 2hzt_A Putative HTH-type trans 23.9 50 0.0017 27.4 3.1 51 667-726 19-72 (107)
217 2pq8_A Probable histone acetyl 23.6 46 0.0016 33.0 3.1 36 567-602 196-232 (278)
218 3bro_A Transcriptional regulat 23.6 38 0.0013 29.2 2.4 46 665-718 37-84 (141)
219 1ku9_A Hypothetical protein MJ 23.5 32 0.0011 30.0 1.9 42 674-723 39-82 (152)
220 3eco_A MEPR; mutlidrug efflux 23.3 37 0.0013 29.3 2.2 51 664-722 33-87 (139)
221 1v4r_A Transcriptional repress 23.2 41 0.0014 27.6 2.4 41 572-614 28-69 (102)
222 1mzb_A Ferric uptake regulatio 23.2 79 0.0027 27.5 4.4 63 561-628 15-84 (136)
223 2fe3_A Peroxide operon regulat 23.1 74 0.0025 28.1 4.2 64 561-629 19-88 (145)
224 2qvo_A Uncharacterized protein 23.1 26 0.0009 28.4 1.1 29 693-722 39-67 (95)
225 3jth_A Transcription activator 22.9 40 0.0014 27.3 2.3 52 665-725 26-77 (98)
226 1r7j_A Conserved hypothetical 22.4 98 0.0033 25.2 4.5 43 567-613 11-53 (95)
227 1bia_A BIRA bifunctional prote 22.1 85 0.0029 31.9 5.0 41 564-604 5-45 (321)
228 1i1g_A Transcriptional regulat 21.9 26 0.00088 30.7 0.9 47 664-718 6-52 (141)
229 2b0l_A GTP-sensing transcripti 21.8 61 0.0021 26.8 3.2 44 569-614 33-77 (102)
230 2nyx_A Probable transcriptiona 21.7 41 0.0014 30.3 2.3 52 664-723 47-100 (168)
231 3g3z_A NMB1585, transcriptiona 21.3 30 0.001 30.2 1.2 47 664-718 33-79 (145)
232 2o03_A Probable zinc uptake re 21.2 95 0.0033 26.8 4.5 50 562-613 9-64 (131)
233 3hrs_A Metalloregulator SCAR; 21.1 89 0.0031 29.6 4.7 44 568-613 10-53 (214)
234 2fa5_A Transcriptional regulat 21.1 27 0.00091 31.2 0.8 48 663-718 50-97 (162)
235 3boq_A Transcriptional regulat 20.9 26 0.00088 31.2 0.7 48 663-718 48-96 (160)
236 3bpv_A Transcriptional regulat 20.6 23 0.00077 30.6 0.2 47 664-718 31-77 (138)
237 1jgs_A Multiple antibiotic res 20.5 48 0.0016 28.4 2.4 48 667-722 39-88 (138)
238 2dbb_A Putative HTH-type trans 20.5 35 0.0012 30.3 1.5 46 664-717 11-56 (151)
239 3k2z_A LEXA repressor; winged 20.5 96 0.0033 28.8 4.7 50 562-613 3-57 (196)
240 1lj9_A Transcriptional regulat 20.0 49 0.0017 28.6 2.4 44 667-718 34-77 (144)
No 1
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=1.4e-133 Score=1178.01 Aligned_cols=692 Identities=32% Similarity=0.575 Sum_probs=642.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC----------------------------------Cchh
Q 004841 11 LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQP----------------------------------HLVS 56 (728)
Q Consensus 11 fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~~----------------------------------~~y~ 56 (728)
||++|+.|++||++|+ .+ .+++..+||++|++|||- .+|.
T Consensus 1 f~~~W~~L~~ai~~I~---~~---~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~ 74 (760)
T 1ldj_A 1 LDQIWDDLRAGIQQVY---TR---QSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYK 74 (760)
T ss_dssp CHHHHHHHHHHHHHHT---TC---CCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHH
T ss_pred ChhhHHHHHHHHHHHH---hc---CCCCHHHHHHHHHHHHHHhcCCcccCCCcccccccccccccccccCcchhHHHHHH
Confidence 7899999999999964 33 268999999999999991 2366
Q ss_pred hHHH-HHHHHHHHHhh---hchhhHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCC------CCcHHHHHHHHHHHH
Q 004841 57 AFVN-ILLLVLPSIRE---KHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS------LPPLNEVGLTCFRDL 126 (728)
Q Consensus 57 ~l~~-l~~~v~~~l~~---~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdr~yv~~~~------~~~i~~l~l~~f~~~ 126 (728)
.+++ +.+|+...+.. ..++.||..|..+|++|+.++++|+++|+||||+||++++ .++|+++||.+||++
T Consensus 75 ~l~~~l~~~l~~~~~~~~~~~~e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~fr~~ 154 (760)
T 1ldj_A 75 RLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDC 154 (760)
T ss_dssp HHHHHHHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcccccccCCCcccHHHHHHHHHHHH
Confidence 7888 88887654433 4568899999999999999999999999999999999976 789999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHhccC---------chhchHHHHHHHHHHHHHHHHHHHHHH
Q 004841 127 VYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMG---------QMDYYENDFETAMLKDTAAYYSRKASN 197 (728)
Q Consensus 127 v~~~~~~~l~~~ll~~I~~~R~g~~id~~~l~~~i~ml~~l~~~---------~~~~Y~~~FE~~~L~~t~~yY~~~s~~ 197 (728)
||.++++++.++++.+|+++|.|+.+|+.+|+++++||+.||.+ .+.+|.+.||++||++|.+||+.++++
T Consensus 155 vf~~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~es~~ 234 (760)
T 1ldj_A 155 LFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTE 234 (760)
T ss_dssp HTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCcccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999853 368999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHchhcCCCcHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhcCcHHHHHHHHHhh
Q 004841 198 WILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLF 277 (728)
Q Consensus 198 ~l~~~s~~~Yl~~v~~~l~eE~~r~~~yL~~~t~~kl~~~l~~~LI~~~~~~ll~~~~s~~~~ll~~~~~~~L~~ly~L~ 277 (728)
|+++.++++||++|+.++++|.+||+.||+++|.++|.++|+++||.+|.+.|. +||..||++++.++|++||+||
T Consensus 235 ~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~----~~~~~ll~~~~~~dL~~my~L~ 310 (760)
T 1ldj_A 235 FLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH----TEFQNLLDADKNEDLGRMYNLV 310 (760)
T ss_dssp HHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH----HHHHHHHHSCCTTHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999885 5899999999999999999999
Q ss_pred ccCCCChHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH
Q 004841 278 SKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSL 357 (728)
Q Consensus 278 ~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~l~~~~~~li~~~F~~~~~f~~~l 357 (728)
+++++|++.|+..|++||.+.|.+++....+. ...++..||+.|+++|++|+.++..||++|+.|..++
T Consensus 311 ~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~-----------~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al 379 (760)
T 1ldj_A 311 SRIQDGLGELKKLLETHIHNQGLAAIEKCGEA-----------ALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAAL 379 (760)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTS-----------GGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHH
T ss_pred CcCcchHHHHHHHHHHHHHHHHHHHHHHhhcc-----------cccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999999999999999764311 1346889999999999999999999999999999999
Q ss_pred HHHHHHHhcCC------CCCCCcHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhhhhccccChHHHHHHHHHHHHHHh
Q 004841 358 KEAFEVFCNKG------VAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRL 431 (728)
Q Consensus 358 ~~af~~~~N~~------~~~~~~~e~La~y~d~~lk~~~~~~~~~~~~~~~l~~i~~lf~~l~~KD~F~~~Y~~~La~RL 431 (728)
++||+.|+|.+ .+..++||+||+|||.+||+|. ++.++++++..|++++.||+|+++||+|+++|+++||+||
T Consensus 380 ~~af~~~iN~~~~~~~~~~~~~~~E~la~y~D~~Lkk~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRL 458 (760)
T 1ldj_A 380 DKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKKSS-KNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRL 458 (760)
T ss_dssp HHHHHHHHHSSHHHHHHTSTTHHHHHHHHHHHHHHBCCS-SCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccccccccccccHHHHHHHhHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 99999999986 2346899999999999999875 4568899999999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHhhCChhhHhHHHHHHhHHHhHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCCCCC
Q 004841 432 LFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFD 511 (728)
Q Consensus 432 L~~~s~s~~~E~~~i~~Lk~~~G~~~t~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~~~~ 511 (728)
|.+++.+.|.|+.||++||.+||.+||++|++||+||..|++++..|++++.++ ...+++|+|.|||+|+||..+..+
T Consensus 459 L~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~--~~~~~~~~v~VLs~~~WP~~~~~~ 536 (760)
T 1ldj_A 459 VHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNS--EPLDLDFSIQVLSSGSWPFQQSCT 536 (760)
T ss_dssp HTTCBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CCCSSEEEEEEEETTTSCCCCCSC
T ss_pred cCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCCeeEEecCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999988651 224799999999999999988888
Q ss_pred ccCcHhHHHHHHHHHHHHHhcCCCceEEeccCCceEEEEeEEcCeeEEEEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCC
Q 004841 512 LNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLS 591 (728)
Q Consensus 512 ~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~lg~~~i~~~~~~~~~~l~vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~ 591 (728)
+.+|++|+.+++.|++||..+|+||+|+|.|++|+|+|+++|++++++++||++||+||++||+.+++|+++|++.||+|
T Consensus 537 ~~lP~~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~ 616 (760)
T 1ldj_A 537 FALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIK 616 (760)
T ss_dssp CCCCGGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCC
T ss_pred CcCCHHHHHHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccccccCC-----CCCCCCCCCeEEEecCCCCCCcceeccCCChh----hhhHHHHhHHHhhhhh
Q 004841 592 DDDVVRLLHSLSCAKYKILNKEP-----NTKTISPTDHFEFNSKFTDKMRRIKIPLPPVD----EKKKVIEDVDKDRRYA 662 (728)
Q Consensus 592 ~~~l~~~L~~L~~~k~kiL~~~~-----~~~~i~~~~~~~~N~~F~~~~~~i~i~~~~~~----e~~~~~~~v~~~R~~~ 662 (728)
+++++++|.+|+ +.+||.+.| +|+.+.+++.|++|.+|++++.||+||.+... |.+.+.+.+++||++.
T Consensus 617 ~~~l~r~L~~l~--k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~~~ 694 (760)
T 1ldj_A 617 MDILAQVLQILL--KSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLL 694 (760)
T ss_dssp HHHHHHHHHHHH--HTTTEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HCCcceeCCCccccccCCCCCCCEEEeeccccCCceEEEecCccccccchhhhhHHHHHHHHHHhH
Confidence 999999999997 678998554 78889999999999999999999999866442 3455778899999999
Q ss_pred hhheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCCCCCCceeecC
Q 004841 663 IDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 728 (728)
Q Consensus 663 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Yia 728 (728)
||||||||||+||+|+|++|+.+|+++++++|.|++.+||+|||+|||||||+|+++|+++|+|+|
T Consensus 695 i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~YlA 760 (760)
T 1ldj_A 695 IQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 760 (760)
T ss_dssp HHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEEECC
T ss_pred heeeehhhhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCCCCCcceeeCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998
No 2
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=6.1e-131 Score=1155.39 Aligned_cols=683 Identities=35% Similarity=0.619 Sum_probs=637.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC-------CchhhHHH-HHHHHHHHHhhh-----chh
Q 004841 9 IDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQP-------HLVSAFVN-ILLLVLPSIREK-----HDE 75 (728)
Q Consensus 9 ~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~~-------~~y~~l~~-l~~~v~~~l~~~-----~~~ 75 (728)
.+||++|..|++||+.| +++++. ++| ||++|++||+. .+|+.+++ +.+|+...+... +++
T Consensus 57 ~~~e~~W~~L~~ai~~I---~~~~~~-~~s---~e~LY~~vy~lc~~k~~~~LY~~l~~~~~~~l~~~~~~l~~~~~~~~ 129 (759)
T 2hye_C 57 NYTQDTWRKLHEAVRAV---QSSTSI-RYN---LEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQILPFREDSLDSV 129 (759)
T ss_dssp CTTTTHHHHHHHHHHTT---STTCCC-SSC---HHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHHHHHTSCCCCTT
T ss_pred chHHHHHHHHHHHHHHH---HhCCCC-CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 56799999999999984 555543 466 99999999993 46778888 888876544331 235
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCC-CCcHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHhcCCcC
Q 004841 76 FMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRDLVYTE--LNGKVRDAVITLIDQEREGEQI 152 (728)
Q Consensus 76 ~~L~~~~~~W~~~~~~~~~i~~if~YLdr~yv~~~~-~~~i~~l~l~~f~~~v~~~--~~~~l~~~ll~~I~~~R~g~~i 152 (728)
.||..|..+|.+|+.++.+|+++|+||||+||++++ .++|+++|+.+||++||.. +++++.++++++|+++|+|+.+
T Consensus 130 ~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~eR~Ge~i 209 (759)
T 2hye_C 130 LFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAV 209 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHTTTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCCCCCcHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhcCCCC
Confidence 799999999999999999999999999999999987 7999999999999999996 9999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccCchhchHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHchhcCCCcHH
Q 004841 153 DRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEP 232 (728)
Q Consensus 153 d~~~l~~~i~ml~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~s~~~Yl~~v~~~l~eE~~r~~~yL~~~t~~ 232 (728)
|+.+++++++||+.| .+|.+.||++||++|.+||+.++++|+++.++++|+++|+.++++|.+||..||+++|.+
T Consensus 210 d~~llk~vi~ml~~L-----~vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r~~~yL~~~t~~ 284 (759)
T 2hye_C 210 DRSLLRSLLGMLSDL-----QVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQK 284 (759)
T ss_dssp CHHHHHHHHHHHHHT-----TCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTTSCTTTHH
T ss_pred cHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcChhhHH
Confidence 999999999999987 589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhhhhhhcCcHHHHHHHHHhhccCCCChHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004841 233 KLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASN 312 (728)
Q Consensus 233 kl~~~l~~~LI~~~~~~ll~~~~s~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~ 312 (728)
+|.++|+++||.+|.+.|++ +|+..||.+++.++|++||+|++++++|++.|+..|++||++.|..++.+..
T Consensus 285 ~l~~~~~~~Li~~~~~~ll~---~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g~~iv~~~~----- 356 (759)
T 2hye_C 285 PLIACVEKQLLGEHLTAILQ---KGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPE----- 356 (759)
T ss_dssp HHHHHHHHHHTTTCSHHHHH---TTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSCGG-----
T ss_pred HHHHHHHHHHHHHHHHHHHH---hhHHHHHhcCCHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhHHHhcCcc-----
Confidence 99999999999999999986 4899999999999999999999999999999999999999999999884321
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhccCCCC
Q 004841 313 KKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSE 392 (728)
Q Consensus 313 ~~~~~~~~~~~~~~~~i~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~~N~~~~~~~~~e~La~y~d~~lk~~~~~ 392 (728)
.+..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+. .++||+||+|||.+||+|. +
T Consensus 357 -----------~~~~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~--~~~~E~la~y~D~~Lk~~~-k 422 (759)
T 2hye_C 357 -----------KDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRP--NKPAELIAKHVDSKLRAGN-K 422 (759)
T ss_dssp -----------GTTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHSSCG-G
T ss_pred -----------cHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCC--CchHHHHHHHHHHHhccCC-C
Confidence 2357999999999999999999999999999999999999999863 6889999999999999864 4
Q ss_pred CCChHHHHHHHHHHhhhhccccChHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhCChhhHhHHHHHHhHHHhH
Q 004841 393 KLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLAR 472 (728)
Q Consensus 393 ~~~~~~~~~~l~~i~~lf~~l~~KD~F~~~Y~~~La~RLL~~~s~s~~~E~~~i~~Lk~~~G~~~t~kl~~Ml~D~~~S~ 472 (728)
+.+++|++..|++++.||+|+++||+|+++|+++||+|||.+++.+.|.|+.||++||.+||.+||++|++||+||..|+
T Consensus 423 ~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~ 502 (759)
T 2hye_C 423 EATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSK 502 (759)
T ss_dssp GCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCCCCCccCcHhHHHHHHHHHHHHHhcCCCceEEeccCCceEEEEeE
Q 004841 473 ENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGK 552 (728)
Q Consensus 473 ~l~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~lg~~~i~~~ 552 (728)
+++..|++++.+.+. ..+++|+|.|||+++||..+..++.+|++|+.+++.|++||..+|+||+|+|.+++|+|+|+++
T Consensus 503 ~l~~~f~~~~~~~~~-~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~l~~~ 581 (759)
T 2hye_C 503 DIMVHFKQHMQNQSD-SGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAE 581 (759)
T ss_dssp HHHHHHHHHHHTTCC-CCCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGCEEEEECC
T ss_pred HHHHHHHHHHhcccC-CCCCceEEEEeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEeccccCcEEEEEE
Confidence 999999998764332 2468999999999999999888899999999999999999999999999999999999999999
Q ss_pred EcCeeEEEEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCeEEEecCCC
Q 004841 553 FESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFT 632 (728)
Q Consensus 553 ~~~~~~~l~vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~~F~ 632 (728)
|++++++++||++||+||++||+.+++|++||++.||+++++|+++|++|+++|.+||.+.|+|+.+.+++.|.+|.+|+
T Consensus 582 ~~~~~~~l~vs~~Qa~iLllFn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN~~f~ 661 (759)
T 2hye_C 582 FKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFK 661 (759)
T ss_dssp CSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEEECCCCC
T ss_pred eCCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHccCCceeecCCCCCCCCCCCEEEeecccc
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred CCCcceeccCCCh----hhhhHHHHhHHHhhhhhhhheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhh
Q 004841 633 DKMRRIKIPLPPV----DEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDL 708 (728)
Q Consensus 633 ~~~~~i~i~~~~~----~e~~~~~~~v~~~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~L 708 (728)
++..||+||.+.. +|.+++.+.+++||++.||||||||||+||+|+|++|+.+|+++++ |.|++.+||+|||+|
T Consensus 662 ~~~~riki~~i~~~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~--F~p~~~~IKk~Ie~L 739 (759)
T 2hye_C 662 HKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK--FPVKPGDLKKRIESL 739 (759)
T ss_dssp CSCSSEECGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSS--SCCCHHHHHHHHHHH
T ss_pred CCceEEEeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC--CCCCHHHHHHHHHHH
Confidence 9999999986432 3455677899999999999999999999999999999999999997 999999999999999
Q ss_pred hhhhhcccCCCCCCceeecC
Q 004841 709 ITRDYLERDKSNPNMFRYLA 728 (728)
Q Consensus 709 Iereyi~R~~~d~~~y~Yia 728 (728)
||||||+|+++|+++|+|+|
T Consensus 740 IereYleR~~~~~~~y~YlA 759 (759)
T 2hye_C 740 IDRDYMERDKDNPNQYHYVA 759 (759)
T ss_dssp HHTTSCBCCSSCTTEEECCC
T ss_pred hcccceecCCCCCCeeEecC
Confidence 99999999999999999998
No 3
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=100.00 E-value=3e-81 Score=677.08 Aligned_cols=357 Identities=32% Similarity=0.493 Sum_probs=326.6
Q ss_pred CCCcHHHHHHHHHHHhccCC-CCCCChHHHHHHHHHHhhhhccccChHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 004841 371 GSSSAELLATFCDNILKKGG-SEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKL 449 (728)
Q Consensus 371 ~~~~~e~La~y~d~~lk~~~-~~~~~~~~~~~~l~~i~~lf~~l~~KD~F~~~Y~~~La~RLL~~~s~s~~~E~~~i~~L 449 (728)
..++||+||+|||.+||+|. +++.++++++..|++++.||+|+++||+|+.+|+++||+|||++++.+.|.|+.||++|
T Consensus 3 ~~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kL 82 (382)
T 3dpl_C 3 ESKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWL 82 (382)
T ss_dssp CCCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 35789999999999999863 24568999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCC--hhhHhHHHHHHhHHHhHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCC-CCCccCcHhHHHHHHHHH
Q 004841 450 KQQCGG--QFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYK-SFDLNLPAEMVKCVEVFR 526 (728)
Q Consensus 450 k~~~G~--~~t~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~-~~~~~lP~~l~~~~~~f~ 526 (728)
| +||. +||++|++||+||..|++++..|++++.+.+....+++|+|.|||+++||..+ ..++.+|++|+.+++.|+
T Consensus 83 K-~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~ 161 (382)
T 3dpl_C 83 R-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVE 161 (382)
T ss_dssp H-HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHH
T ss_pred H-HcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEccCCcCCCCCCCCCccCCHHHHHHHHHHH
Confidence 9 9997 99999999999999999999999998765432234689999999999999874 568999999999999999
Q ss_pred HHHHhcCCCceEEeccCCceEEEEeEEcCeeEEEEEcHHHHHHHHhhcCC--CCcCHHHHHHHhCCCHHHHHHHHHHhhh
Q 004841 527 EFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSS--DRLSYSEIMTQLNLSDDDVVRLLHSLSC 604 (728)
Q Consensus 527 ~~Y~~~~~~R~L~w~~~lg~~~i~~~~~~~~~~l~vs~~Q~~iLllFn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~~ 604 (728)
+||..+|+||+|+|.|++|+|+|++++++++++++||++||+||++||+. +++|++||++.||++.++|+++|++|++
T Consensus 162 ~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~ 241 (382)
T 3dpl_C 162 EFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVA 241 (382)
T ss_dssp HHHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHC
T ss_pred HHHHhcCCCCEEEEecCcccEEEEEEeCCceEEEEEcHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999985 7999999999999999999999999987
Q ss_pred c---cccccccCCC---CCCCCCCCeEEEecCCCCC-----CcceeccCCC------hhhhhHHHHhHHHhhhhhhhhee
Q 004841 605 A---KYKILNKEPN---TKTISPTDHFEFNSKFTDK-----MRRIKIPLPP------VDEKKKVIEDVDKDRRYAIDASI 667 (728)
Q Consensus 605 ~---k~kiL~~~~~---~~~i~~~~~~~~N~~F~~~-----~~~i~i~~~~------~~e~~~~~~~v~~~R~~~i~A~I 667 (728)
. |++||.+.|. ++.+.++|.|.+|.+|+++ .+|++|+.+. ..+.+++.+.+++||++.|||||
T Consensus 242 ~~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~AaI 321 (382)
T 3dpl_C 242 FPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAI 321 (382)
T ss_dssp CTTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhcceeeecCCccccCcCCCCCEEEEcCCCcCCcccccceeEEEecccccccccchhhhhhHHHHHHHhhheeeEEE
Confidence 3 5789998875 3668899999999999872 2667776542 13455678899999999999999
Q ss_pred eecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCCCCCCceeecC
Q 004841 668 VRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 728 (728)
Q Consensus 668 VRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Yia 728 (728)
|||||+||+|+|++|+.+|+++++++|.|++.+||+|||+|||||||+||++|+++|+|+|
T Consensus 322 VRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 322 IQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 382 (382)
T ss_dssp HHHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred ehhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999998
No 4
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-64 Score=552.92 Aligned_cols=355 Identities=24% Similarity=0.478 Sum_probs=314.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc-------CCchhhHHH-HHHHHH----HHHhhhchhh
Q 004841 9 IDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQ-------PHLVSAFVN-ILLLVL----PSIREKHDEF 76 (728)
Q Consensus 9 ~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~-------~~~y~~l~~-l~~~v~----~~l~~~~~~~ 76 (728)
.+|+++|+.|++||++| +++++. ++| ||++|++||+ +.+|+.+++ +.+++. +.+....++.
T Consensus 28 ~~~~~~W~~L~~ai~~I---~~~~~~-~~s---~eeLY~~vy~lc~~k~g~~LY~~l~~~~~~~l~~~v~~~l~~~~~~~ 100 (410)
T 4ap2_B 28 KYVNSIWDLLKNAIQEI---QRKNNS-GLS---FEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLNNN 100 (410)
T ss_dssp HHHHHHHHHHHHHHHHH---HTTCCT-TCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTHHHHHHTTTTSS
T ss_pred hHHHHHHHHHHHHHHHH---HhcCCC-CCC---HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 47999999999999996 445544 477 9999999999 357877777 776654 4455556678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCcHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHhcCCcCCH
Q 004841 77 MLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYT--ELNGKVRDAVITLIDQEREGEQIDR 154 (728)
Q Consensus 77 ~L~~~~~~W~~~~~~~~~i~~if~YLdr~yv~~~~~~~i~~l~l~~f~~~v~~--~~~~~l~~~ll~~I~~~R~g~~id~ 154 (728)
||+.|.++|++|+.++.+|+++|+||||+||++++.++|+++|+.+||++||. ++++++.++++.+|+++|.|+.+|+
T Consensus 101 ~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~eR~Ge~id~ 180 (410)
T 4ap2_B 101 FLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDR 180 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHTTCCCHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHhhHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999997 7999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCchhchHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHchhcCCCcHHHH
Q 004841 155 ALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKL 234 (728)
Q Consensus 155 ~~l~~~i~ml~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~s~~~Yl~~v~~~l~eE~~r~~~yL~~~t~~kl 234 (728)
.+|+++++||+.||.+.+.+|.+.||++||++|.+||+.++++|+++.++++||++|+.++++|.+||..||+++|.++|
T Consensus 181 ~lik~vi~ml~~Lg~~~~~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~yL~~sT~~kL 260 (410)
T 4ap2_B 181 GAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPI 260 (410)
T ss_dssp HHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhcChhhHHHH
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhhhhhhhcCcHHHHHHHHHhhccCCCChHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004841 235 LEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKK 314 (728)
Q Consensus 235 ~~~l~~~LI~~~~~~ll~~~~s~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~ 314 (728)
.++|+++||.+|.+.|++++++||..||++++.++|++||+||+|+++|++.|+..|++||++.|.+++.+...
T Consensus 261 ~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~L~~~~~~~I~~~G~~iv~~~~~------ 334 (410)
T 4ap2_B 261 VKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGE------ 334 (410)
T ss_dssp HHHHHHHHTGGGHHHHHTCTTTSHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcccc------
Confidence 99999999999999999888899999999999999999999999999999999999999999999999976532
Q ss_pred hhhccccccchHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 004841 315 AEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNIL 386 (728)
Q Consensus 315 ~~~~~~~~~~~~~~i~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~~N~~~~~~~~~e~La~y~d~~l 386 (728)
..+|..||+.||++|++|+.++..||++|+.|..++++||+.|+|.+. +.||+||+|||..-
T Consensus 335 -------~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~AF~~fiN~~~---~spElla~y~D~~~ 396 (410)
T 4ap2_B 335 -------GKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLNS---RSPEYLAENLYFQS 396 (410)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHC------------------
T ss_pred -------ccChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC---CCHHHHHHHccCcc
Confidence 235889999999999999999999999999999999999999999983 67899999999743
No 5
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=100.00 E-value=4.1e-62 Score=527.69 Aligned_cols=341 Identities=24% Similarity=0.503 Sum_probs=266.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc-------CCchhhHHH-HHHHHH----HHHhhhchh
Q 004841 8 TIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQ-------PHLVSAFVN-ILLLVL----PSIREKHDE 75 (728)
Q Consensus 8 ~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~-------~~~y~~l~~-l~~~v~----~~l~~~~~~ 75 (728)
..+|+++|+.|++||++|+ ++++. ++| ||++|++||+ +.+|+.+++ +.+|+. +.+....++
T Consensus 10 ~~~~~~~W~~L~~ai~~I~---~~~~~-~~s---~e~LY~~vy~lc~~k~g~~LY~~l~~~~~~~l~~~v~~~~~~~~~~ 82 (364)
T 4eoz_B 10 EKYVNSIWDLLKNAIQEIQ---RKNNS-GLS---FEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLNN 82 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHH---TTCGG-GCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTHHHHHHTTTTS
T ss_pred hhhHHHHHHHHHHHHHHHH---hcCCC-CCC---HHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 3689999999999999964 45444 466 9999999999 357877777 776654 444555567
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCcHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHhcCCcCC
Q 004841 76 FMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYT--ELNGKVRDAVITLIDQEREGEQID 153 (728)
Q Consensus 76 ~~L~~~~~~W~~~~~~~~~i~~if~YLdr~yv~~~~~~~i~~l~l~~f~~~v~~--~~~~~l~~~ll~~I~~~R~g~~id 153 (728)
.||+.|.++|++|+.++.+|+++|+||||+||++++.++|+++|+.+||++||. ++++++.++++.+|+++|.|+.+|
T Consensus 83 ~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~I~~lgl~~fr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~id 162 (364)
T 4eoz_B 83 NFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVD 162 (364)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGTCCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCCCCC
Confidence 899999999999999999999999999999999999999999999999999997 799999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchhchHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHchhcCCCcHHH
Q 004841 154 RALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPK 233 (728)
Q Consensus 154 ~~~l~~~i~ml~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~s~~~Yl~~v~~~l~eE~~r~~~yL~~~t~~k 233 (728)
+.+++++++||+.||.+.+.+|.+.||++||++|.+||+.++++|+++.++++||++|+.++++|.+||..||+++|.++
T Consensus 163 ~~lik~~i~ml~~L~~~~~~~Y~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~ 242 (364)
T 4eoz_B 163 RGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEP 242 (364)
T ss_dssp HHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSCGGGHHH
T ss_pred HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCcccHHH
Confidence 99999999999999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhhhhhhhcCcHHHHHHHHHhhccCCCChHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004841 234 LLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNK 313 (728)
Q Consensus 234 l~~~l~~~LI~~~~~~ll~~~~s~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~ 313 (728)
|.++|+++||.+|.+.|++++++|+..||++++.++|++||+||+|+++|+++|++.|++||++.|.+++.+...
T Consensus 243 l~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~~----- 317 (364)
T 4eoz_B 243 IVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGE----- 317 (364)
T ss_dssp HHHHHHHHHTTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCccc-----
Confidence 999999999999999999888899999999999999999999999999999999999999999999999976532
Q ss_pred hhhhccccccchHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcCC
Q 004841 314 KAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKG 368 (728)
Q Consensus 314 ~~~~~~~~~~~~~~~i~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~~N~~ 368 (728)
..+|..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+
T Consensus 318 --------~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~n 364 (364)
T 4eoz_B 318 --------GKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN 364 (364)
T ss_dssp -------------------------------------------------------
T ss_pred --------cCChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCc
Confidence 23588899999999999999999999999999999999999999974
No 6
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=100.00 E-value=9.5e-60 Score=513.67 Aligned_cols=343 Identities=20% Similarity=0.461 Sum_probs=310.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC---------CchhhHHH-HHHHHHHHHhh---
Q 004841 5 ERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQP---------HLVSAFVN-ILLLVLPSIRE--- 71 (728)
Q Consensus 5 ~~~~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~~---------~~y~~l~~-l~~~v~~~l~~--- 71 (728)
++.+.+|+++|+.|++||++|+. + .+++..+||++|++||+- .+|+.+++ +.+|+...+..
T Consensus 9 ~~~~~~~e~~W~~L~~ai~~I~~---~---~~~~~~s~e~LY~~vy~lc~~~~~~~~~LY~~l~~~~~~~l~~~~~~~~~ 82 (391)
T 2wzk_A 9 NKGSLQFEDKWDFMHPIVLKLLR---Q---ESVTKQQWFDLFSDVHAVCLWDDKGSSKIHQALKEDILEFIKQAQARVLS 82 (391)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHH---T---CCCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCccccHHHHHHHHHHHHHHHHh---C---CCCChHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999754 2 257888999999999992 35778888 88877543322
Q ss_pred -hchhhHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcC--------CCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 004841 72 -KHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARR--------SLPPLNEVGLTCFRDLVYTELNGKVRDAVITL 142 (728)
Q Consensus 72 -~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdr~yv~~~--------~~~~i~~l~l~~f~~~v~~~~~~~l~~~ll~~ 142 (728)
.+++.||..|..+|.+|+.++.+|+++|+||||+||.++ +.++|+++|+.+||++||.++++++.++++.+
T Consensus 83 ~~~~e~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~~~~~~~~I~~lgL~~fr~~v~~~i~~~l~~~ll~l 162 (391)
T 2wzk_A 83 HQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKL 162 (391)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTTTTGGGHHHHTTSTTC--------CTTCHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999763 36799999999999999999999999999999
Q ss_pred HHHHhcCCcCCHHHHHHHHHHHHHhccC---chhchHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 004841 143 IDQEREGEQIDRALLKNVLDIFVEIGMG---QMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREK 219 (728)
Q Consensus 143 I~~~R~g~~id~~~l~~~i~ml~~l~~~---~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~s~~~Yl~~v~~~l~eE~ 219 (728)
|+++|.|+.+|+.+++++++||+.||.+ .+.+|.+.||++||++|.+||+.+|++|+++.++++||++|+.+|++|.
T Consensus 163 I~~eR~Ge~id~~llk~vi~~l~~L~~~~~~~l~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~ 242 (391)
T 2wzk_A 163 VHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEE 242 (391)
T ss_dssp HHHHHTTCCCCTHHHHHHHHHHHHSCCCSSCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHccCccccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999864 4789999999999999999999999999999999999999999999999
Q ss_pred HHHchhcC----CCcHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhcCcHHHHHHHHHhhccCCCChHhHHHHHHHHH
Q 004841 220 DRVSHYLH----SSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHV 295 (728)
Q Consensus 220 ~r~~~yL~----~~t~~kl~~~l~~~LI~~~~~~ll~~~~s~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i 295 (728)
+||+.||+ ++|.++|.++|+++||.+|.+.|++ |+..||++++.+||++||+||+++++|+++|+..|++||
T Consensus 243 ~R~~~yL~~~~~~sT~~kl~~~~e~~LI~~h~~~ll~----~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I 318 (391)
T 2wzk_A 243 KRALRYLETRRECNSVEALMECCVNALVTSFKETILA----ECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHI 318 (391)
T ss_dssp HHHHHHSCCTTCCSHHHHHHHHHHHHHTGGGHHHHHT----THHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHHHHHHHH
T ss_pred HHHHHHcCCcCCcchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCHHHHHHHHHHHccCcccHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999975 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccccchHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcCC
Q 004841 296 TAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKG 368 (728)
Q Consensus 296 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~~N~~ 368 (728)
++.|.+++....+. ...+|..||+.|+++|++|+.++..||++|+.|..++++||+.|+|.+
T Consensus 319 ~~~G~~~v~~~~~~-----------~~~~~~~~V~~LL~l~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~ 380 (391)
T 2wzk_A 319 ISAGLADMVAAAET-----------ITTDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDA 380 (391)
T ss_dssp HHHHHHHHHHHGGG-----------TTTCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-----------ccCCHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc
Confidence 99999997643211 135788999999999999999999999999999999999999999976
No 7
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=100.00 E-value=2.6e-59 Score=503.95 Aligned_cols=330 Identities=24% Similarity=0.504 Sum_probs=300.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc-------CCchhhHHH-HHHHHHHHHhh-----hch
Q 004841 8 TIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQ-------PHLVSAFVN-ILLLVLPSIRE-----KHD 74 (728)
Q Consensus 8 ~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~-------~~~y~~l~~-l~~~v~~~l~~-----~~~ 74 (728)
..+||++|+.|++||++|+ ++++. ++| ||++|++||+ +.+|+.+++ +.+|+...+.. .++
T Consensus 7 ~~~~~~~W~~L~~ai~~I~---~~~~~-~~s---~eeLY~~vy~lc~~~~g~~LY~~l~~~~~~~l~~~~~~~~~~~~~~ 79 (354)
T 4a64_A 7 ENYTDETWQKLKEAVEAIQ---NSTSI-KYN---LEELYQAVENLCSYKISANLYKQLRQICEDHIKAQIHQFREDSLDS 79 (354)
T ss_dssp SSSTTHHHHHHHHHHHHHH---TTCCC-CSC---HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTGGGGCCSCCH
T ss_pred HHHHHHHHHHHHHHHHHHH---hCCCC-CCC---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHccccH
Confidence 3699999999999999964 45544 467 9999999999 457888888 88887553322 234
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCC-CCcHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHhcCCc
Q 004841 75 EFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRDLVYT--ELNGKVRDAVITLIDQEREGEQ 151 (728)
Q Consensus 75 ~~~L~~~~~~W~~~~~~~~~i~~if~YLdr~yv~~~~-~~~i~~l~l~~f~~~v~~--~~~~~l~~~ll~~I~~~R~g~~ 151 (728)
+.||+.|.++|++|+.++.+|+++|+||||+||++++ .++|+++|+.+||++||. ++++++.++++.+|+++|.|+.
T Consensus 80 ~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~ 159 (354)
T 4a64_A 80 VLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEA 159 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSCCSCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhcCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6899999999999999999999999999999999986 799999999999999997 6999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCchhchHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHchhcCCCcH
Q 004841 152 IDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSE 231 (728)
Q Consensus 152 id~~~l~~~i~ml~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~s~~~Yl~~v~~~l~eE~~r~~~yL~~~t~ 231 (728)
+|+.+|+++++||..| .+|.+.||++||++|.+||+.+|++|+++.++++||++|+.++++|.+||..||+++|.
T Consensus 160 id~~lik~~i~ml~~L-----~vY~~~FE~~fL~~t~~fY~~e~~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~ 234 (354)
T 4a64_A 160 IDRSLLRSLLSMLSDL-----QIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQ 234 (354)
T ss_dssp CCHHHHHHHHHHHHHT-----TCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCChhhH
Confidence 9999999999999987 58999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhcCcHHHHHHHHHhhccCCCChHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004841 232 PKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAAS 311 (728)
Q Consensus 232 ~kl~~~l~~~LI~~~~~~ll~~~~s~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~ 311 (728)
++|.++|+++||.+|.+.|+ ++|+..||++++.++|++||+||+++++|+++|++.|++||.+.|.+++.+.
T Consensus 235 ~~l~~~~e~~LI~~h~~~ll---~~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~----- 306 (354)
T 4a64_A 235 KSLIATVEKQLLGEHLTAIL---QKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINP----- 306 (354)
T ss_dssp HHHHHHHHHHHTGGGHHHHH---HHHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHSC-----
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcCc-----
Confidence 99999999999999999988 3799999999999999999999999999999999999999999999998532
Q ss_pred hhhhhhccccccchHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcCC
Q 004841 312 NKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKG 368 (728)
Q Consensus 312 ~~~~~~~~~~~~~~~~~i~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~~N~~ 368 (728)
.++..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+
T Consensus 307 -----------~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~~ 352 (354)
T 4a64_A 307 -----------EKDKTMRQELDDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKR 352 (354)
T ss_dssp -----------CSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC----
T ss_pred -----------cchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 2356799999999999999999999999999999999999999987
No 8
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=99.93 E-value=4.7e-27 Score=194.34 Aligned_cols=82 Identities=33% Similarity=0.653 Sum_probs=79.4
Q ss_pred hhhhHHHHhHHHhhhhhhhheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCCCCCCcee
Q 004841 646 DEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFR 725 (728)
Q Consensus 646 ~e~~~~~~~v~~~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~ 725 (728)
+|.+++.+.+.+||++.||||||||||++|+|+|++|+.+|+++++++|+|++.+||+|||.|||||||+|+++| ++|+
T Consensus 7 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~ 85 (88)
T 3o2p_E 7 TEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYA 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEE
T ss_pred chHHHHHHHHHHHhhhhhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeEE
Confidence 467788899999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred ecC
Q 004841 726 YLA 728 (728)
Q Consensus 726 Yia 728 (728)
|+|
T Consensus 86 YlA 88 (88)
T 3o2p_E 86 YLA 88 (88)
T ss_dssp ECC
T ss_pred eeC
Confidence 998
No 9
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=99.93 E-value=3.3e-27 Score=190.71 Aligned_cols=75 Identities=49% Similarity=0.750 Sum_probs=73.5
Q ss_pred hHHHhhhhhhhheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCCCCCCceeecC
Q 004841 654 DVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 728 (728)
Q Consensus 654 ~v~~~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Yia 728 (728)
.+++||++.|+||||||||++|+|+|++|+.+|+++++++|+|++.+||+|||+|||||||+|+++|+++|+|+|
T Consensus 3 ~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y~Y~A 77 (77)
T 3tdu_C 3 NIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 77 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred chhhhhhheEeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceEEEeC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999998
No 10
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=99.92 E-value=6.9e-27 Score=195.65 Aligned_cols=82 Identities=48% Similarity=0.713 Sum_probs=77.2
Q ss_pred hhhHHHHhHHHhhhhhhhheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCCCCCCceee
Q 004841 647 EKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRY 726 (728)
Q Consensus 647 e~~~~~~~v~~~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Y 726 (728)
|..++.+.+++||++.||||||||||++|+|+|++|+.+|+++|+++|.|++.+||+|||+|||||||+|+++|+++|+|
T Consensus 11 e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d~~~y~Y 90 (92)
T 1iuy_A 11 ERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTY 90 (92)
T ss_dssp CCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSCSSEEEE
T ss_pred HHHHHHHHHHHHHHHHeeeeeeehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCCCCCeeEe
Confidence 44556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 004841 727 LA 728 (728)
Q Consensus 727 ia 728 (728)
+|
T Consensus 91 ~A 92 (92)
T 1iuy_A 91 VA 92 (92)
T ss_dssp C-
T ss_pred cC
Confidence 98
No 11
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.92 E-value=3.1e-26 Score=194.27 Aligned_cols=81 Identities=54% Similarity=0.801 Sum_probs=76.9
Q ss_pred hhhhHHHHhHHHhhhhhhhheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCCCCCCcee
Q 004841 646 DEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFR 725 (728)
Q Consensus 646 ~e~~~~~~~v~~~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~ 725 (728)
+|.+.+.+.+++||++.||||||||||+||+|+|++|+.+|+++++ |.|++.+||+|||.|||||||+|+++|+++|+
T Consensus 15 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~--F~p~~~~IKk~IE~LIereYleR~~~d~~~y~ 92 (101)
T 2do7_A 15 EEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLK--FPVKPADLKKRIESLIDRDYMERDKENPNQYN 92 (101)
T ss_dssp CCCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCS--SCCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhhhhHHhcCCCCCCeEE
Confidence 3455677889999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred ecC
Q 004841 726 YLA 728 (728)
Q Consensus 726 Yia 728 (728)
|+|
T Consensus 93 YlA 95 (101)
T 2do7_A 93 YIA 95 (101)
T ss_dssp ECC
T ss_pred Eec
Confidence 998
No 12
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=85.28 E-value=0.73 Score=36.75 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=35.2
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCC
Q 004841 577 DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTI 619 (728)
Q Consensus 577 ~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i 619 (728)
.+.|+.||++.+|++...+.+.|..|. +.++|.+.+.+..+
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~Le--~kG~I~R~~ggr~~ 63 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQLH--DVGVLEKVNAGKGV 63 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEESCSSSS
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCcEEecCCCCCc
Confidence 689999999999999999999999997 56888887755544
No 13
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=84.81 E-value=0.35 Score=37.55 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=46.9
Q ss_pred eeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCCCCCCceeecC
Q 004841 667 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 728 (728)
Q Consensus 667 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Yia 728 (728)
.|...|.+|.+..++|-. .|..+.+++-.||+.|.+.|-|.=--+|+..|.||+
T Consensus 12 Fi~yIk~~Kvv~LedLA~--------~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 12 FINYIKKSKVVLLEDLAF--------QMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHCSEECHHHHHH--------HHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHcCeeeHHHHHH--------HhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 356678889888888765 588999999999999999999988888999999985
No 14
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=84.50 E-value=1.2 Score=36.84 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=42.2
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 563 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 563 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
+..+..||..+.+.+.+|..||++.+|++...+.++|..|. +.+++...+
T Consensus 23 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~--~~glv~~~~ 72 (99)
T 3cuo_A 23 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMR--DEGLIDSQR 72 (99)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred ChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEe
Confidence 46788888888777789999999999999999999999997 457776543
No 15
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=84.09 E-value=1 Score=44.89 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=43.8
Q ss_pred EEcHHHHHHHHhhcC--CCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 561 IVTTYQASALLLFNS--SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
.+|..|..||....+ .+++|..||++.++++...+.+.|..|. +.+++.+.+
T Consensus 31 ~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe--~~G~i~R~~ 84 (250)
T 1p4x_A 31 DMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLV--KHSYISKVR 84 (250)
T ss_dssp SSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHH--HTTSCEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHH--HCCCEEecC
Confidence 467889999988866 3589999999999999999999999997 457777654
No 16
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=83.83 E-value=0.45 Score=53.65 Aligned_cols=135 Identities=9% Similarity=0.066 Sum_probs=49.0
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhc---cccccccCCCCCCCCCCCeEEEecCCCCCCccee
Q 004841 563 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCA---KYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIK 639 (728)
Q Consensus 563 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~---k~kiL~~~~~~~~i~~~~~~~~N~~F~~~~~~i~ 639 (728)
+..+..||....+...+|..+|++.+|++...+.+.|..|... ..+++... ++.|.++..........
T Consensus 429 ~~~~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~--------g~~y~L~~~~~~~~~~~- 499 (583)
T 3lmm_A 429 DYRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAH--------DGVWLLGNACREILRKV- 499 (583)
T ss_dssp CHHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEE--------TTEEEECHHHHHHHTSC-
T ss_pred chhHHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEe--------CCEEEECHHHHHHhccc-
Confidence 4567788877777789999999999999999999999999741 14666653 26798877542211100
Q ss_pred ccCCChhhhhHH-HHhHHHhhhhhhhheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCC
Q 004841 640 IPLPPVDEKKKV-IEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 718 (728)
Q Consensus 640 i~~~~~~e~~~~-~~~v~~~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 718 (728)
+. .....+ ...+ + ....+..|+..++.++.++-.|+.+. +..+.....+.|..|+++|-|++.+
T Consensus 500 -~~---~~~~~~~~~~~--~-~~~~~~~I~~~l~~~g~it~~di~~l--------~~ls~~qa~~~L~~Lv~~G~l~~~G 564 (583)
T 3lmm_A 500 -EP---SPFSPVRYLST--D-QAELTNAAMLWLSEVGDLATSDLMAM--------CGVSRGTAKACVDGLVDEERVVAVG 564 (583)
T ss_dssp -C------------------------------------------------------------------------------
T ss_pred -cc---ccccccccccC--C-hhHHHHHHHHHHHHcCCcCHHHHHHH--------HCCCHHHHHHHHHHHHHCCcEEEeC
Confidence 00 000000 0000 1 23456779999999999998888773 2346677799999999999999976
Q ss_pred CCC
Q 004841 719 SNP 721 (728)
Q Consensus 719 ~d~ 721 (728)
..+
T Consensus 565 ~gr 567 (583)
T 3lmm_A 565 GGR 567 (583)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 17
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=81.87 E-value=1.2 Score=36.76 Aligned_cols=51 Identities=10% Similarity=0.157 Sum_probs=42.6
Q ss_pred EEEcHHHHHHHHhhcC--CCCcCHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004841 560 LIVTTYQASALLLFNS--SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 612 (728)
Q Consensus 560 l~vs~~Q~~iLllFn~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 612 (728)
..++..|..||....+ .+.++..+|++.++++...+.++|..|.. -+++.+
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~--kglIkr 68 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIKA 68 (91)
T ss_dssp CCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEE
Confidence 4567889999987775 56899999999999999999999999974 456653
No 18
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=81.03 E-value=2 Score=38.25 Aligned_cols=52 Identities=29% Similarity=0.422 Sum_probs=44.5
Q ss_pred EEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 560 LIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 560 l~vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
+.+|+.|..||.....++ +|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 34 ~~lt~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~--~~Glv~r~~ 85 (146)
T 3tgn_A 34 VALTNTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLV--KEGMLETSK 85 (146)
T ss_dssp SCCCHHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC--
T ss_pred cCCCHHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHH--HCCCeEecc
Confidence 357889999999998888 9999999999999999999999997 457887654
No 19
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=80.53 E-value=1.7 Score=34.54 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=36.0
Q ss_pred HHHHHhhcCCC---CcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 567 ASALLLFNSSD---RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 567 ~~iLllFn~~~---~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
..||.++.+.. .+|..||++.+|++...+.++|..|. +.+++...+
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~--~~G~I~~~g 65 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA--KKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHH--HHTSEEEEC
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEecC
Confidence 55655555444 89999999999999999999999996 456666543
No 20
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=80.32 E-value=2.7 Score=34.63 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=43.3
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCeEEEecC
Q 004841 563 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 630 (728)
Q Consensus 563 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~~ 630 (728)
+..+..||.++ ...+|+.||++.+|++...+.++|..|. +.+++.+.+ +.|.++..
T Consensus 30 ~~~r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~--~~Glv~~~~--------g~y~l~~~ 85 (96)
T 1y0u_A 30 NPVRRKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLE--AGFCIERVG--------ERWVVTDA 85 (96)
T ss_dssp CHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEET--------TEEEECTT
T ss_pred CHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEC--------CEEEECCC
Confidence 34566677666 4579999999999999999999999997 457776543 26777654
No 21
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=80.27 E-value=1.5 Score=38.99 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=45.3
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 561 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
.+|..|..||......+++|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 33 glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~--~~Glv~r~~ 84 (140)
T 3hsr_A 33 DLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLE--KKDYVVRTR 84 (140)
T ss_dssp TCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCeEecC
Confidence 3578899999998888899999999999999999999999997 457777654
No 22
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=79.81 E-value=1.8 Score=38.61 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=44.1
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
+|..|..||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 29 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 79 (145)
T 3g3z_A 29 LNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLA--GQGLIEWQE 79 (145)
T ss_dssp CCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEECC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeecc
Confidence 578899999888777789999999999999999999999997 457777654
No 23
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=79.47 E-value=1.5 Score=36.68 Aligned_cols=50 Identities=24% Similarity=0.214 Sum_probs=42.6
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 18 l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~--~~glv~~~ 67 (109)
T 1sfx_A 18 FKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLL--KRGFVRRE 67 (109)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEE
Confidence 577888899888766789999999999999999999999997 45677653
No 24
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=79.15 E-value=2.7 Score=34.77 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=40.5
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCC
Q 004841 563 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPN 615 (728)
Q Consensus 563 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~ 615 (728)
+.....||..+.+ +..|+.||++.+|++...+.++|..|. +.+++.....
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~--~~Glv~~~~~ 71 (98)
T 3jth_A 22 NERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLR--RDGLVTTRKE 71 (98)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEECC
T ss_pred CHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEe
Confidence 3456677777766 789999999999999999999999997 4678776543
No 25
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=79.09 E-value=3.5 Score=32.79 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=35.4
Q ss_pred HHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 568 SALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 568 ~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
.||..+.+...+|..||++.+|++...+.+.|..|.. .+++.+.
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~--~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEK--AGMVQRS 47 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHH--HTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEe
Confidence 4555555556899999999999999999999999974 5677643
No 26
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=78.16 E-value=3.8 Score=32.17 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=35.7
Q ss_pred HHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 569 ALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 569 iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
++..+.+.+..|..+|+..+|++...+.++|.+|. +.+.+.+.|
T Consensus 20 ~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~--kkG~V~~~~ 63 (75)
T 1sfu_A 20 EVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQ--KEDTVKMVP 63 (75)
T ss_dssp HHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred HHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHH--HCCCEecCC
Confidence 35566777779999999999999999999999997 445565554
No 27
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=77.76 E-value=3 Score=37.51 Aligned_cols=50 Identities=6% Similarity=0.153 Sum_probs=43.9
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 41 lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le--~~Glv~r~ 90 (155)
T 3cdh_A 41 LRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMD--ARGLVTRV 90 (155)
T ss_dssp CCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEec
Confidence 478899999988888899999999999999999999999997 45777664
No 28
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=77.68 E-value=1.5 Score=39.00 Aligned_cols=52 Identities=15% Similarity=0.216 Sum_probs=41.3
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 561 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
.+|..|+.||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 34 ~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~--~~Glv~r~~ 85 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELE--GRNLVRRER 85 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHH--HTTSEEC--
T ss_pred CCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEeecc
Confidence 4678899999988888899999999999999999999999997 457777653
No 29
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=77.49 E-value=2.2 Score=38.04 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=44.1
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 561 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
.+|..|..||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 88 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLE--EKKYIEVNG 88 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC--
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEeec
Confidence 4678899999988887899999999999999999999999997 457777653
No 30
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=76.48 E-value=1.9 Score=37.68 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=43.3
Q ss_pred EEcHHHHHHHHhhcCC--CCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 561 IVTTYQASALLLFNSS--DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
.+|..|..||...... +.+|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 87 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILS--QEDYFDKKR 87 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHH--HTTSSCCBC
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEecC
Confidence 3577888888777655 789999999999999999999999997 457777654
No 31
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=76.30 E-value=1.9 Score=38.66 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=43.5
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
+|..|..||.....++.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 39 lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 89 (149)
T 4hbl_A 39 ITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLE--QSGWVKRER 89 (149)
T ss_dssp CCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEC--
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeeCC
Confidence 578899999888777899999999999999999999999997 457887654
No 32
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=76.29 E-value=2.5 Score=37.40 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhh-cCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 562 VTTYQASALLLF-NSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 562 vs~~Q~~iLllF-n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
+|..|..||..+ ...+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 35 l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~--~~glv~r~~ 86 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLE--SQGLVRRLA 86 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHH--HCCCeeecC
Confidence 466788888888 777889999999999999999999999997 456776543
No 33
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=76.20 E-value=2.1 Score=37.31 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=42.4
Q ss_pred EEcHHHHHHHHhhcCCCC--cCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 561 IVTTYQASALLLFNSSDR--LSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~~~--~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
.++..|..||..+.+.+. +|..||++.+|++...+.++|..|. +.+++.+.
T Consensus 23 gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~--~~GlV~r~ 75 (123)
T 3r0a_A 23 NLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLH--EKEILQRS 75 (123)
T ss_dssp TCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEee
Confidence 457889989987765554 9999999999999999999999997 45777654
No 34
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=76.08 E-value=3.3 Score=36.69 Aligned_cols=49 Identities=4% Similarity=0.070 Sum_probs=42.2
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
+|..|+.||..+. .+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 35 l~~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le--~~glv~r~ 83 (146)
T 2gxg_A 35 LSYLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLE--EMGLVVRV 83 (146)
T ss_dssp CCHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHH--HCCCEEee
Confidence 4778999998887 7889999999999999999999999997 34677654
No 35
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=75.72 E-value=1.6 Score=38.80 Aligned_cols=51 Identities=24% Similarity=0.207 Sum_probs=44.1
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
+|..|..||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 35 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 85 (143)
T 3oop_A 35 VTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLL--RKELIVREI 85 (143)
T ss_dssp SCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHH--HCCCeeccC
Confidence 578899999888777899999999999999999999999997 457777654
No 36
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=75.27 E-value=2.9 Score=33.35 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=43.1
Q ss_pred EEcHHHHHHHHhhcCC--CCcCHHHHHHHh-----CCCHHHHHHHHHHhhhccccccccC
Q 004841 561 IVTTYQASALLLFNSS--DRLSYSEIMTQL-----NLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~--~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
.++.-+..||..+.+. ..+|.+||++.+ +++...+.+.|..|. +.+++.+.
T Consensus 14 ~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~--~~Glv~~~ 71 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFD--DAGIVTRH 71 (83)
T ss_dssp CCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred CcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH--HCCCeEEE
Confidence 4567788899888765 589999999999 999999999999997 45777664
No 37
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=75.13 E-value=2 Score=37.69 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=43.1
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
++..|+.||..+..++.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 27 l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~--~~glv~~~ 76 (138)
T 3bpv_A 27 LTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLE--ESGFIERE 76 (138)
T ss_dssp CCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEee
Confidence 478899999888777899999999999999999999999997 44677654
No 38
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=75.04 E-value=2.7 Score=37.77 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=43.1
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 612 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 612 (728)
+|..|..||..+...+.+|..+|++.++++...+.+.+..|. +.+++.+
T Consensus 39 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r 87 (154)
T 2qww_A 39 LTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLI--SLGLVVK 87 (154)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEe
Confidence 578899999888877889999999999999999999999997 4577766
No 39
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=74.95 E-value=2.5 Score=33.64 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=36.6
Q ss_pred HHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 569 ALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 569 iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
|+...+++..++++||++.+++++..+++-|..|.. .+.|.+.
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~--~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLES--MGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEe
Confidence 566677888999999999999999999999999974 4566665
No 40
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=74.70 E-value=3.5 Score=32.93 Aligned_cols=49 Identities=8% Similarity=0.093 Sum_probs=39.2
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHhCCCHH-HHHHHHHHhhhccccccccCC
Q 004841 564 TYQASALLLFNSSDRLSYSEIMTQLNLSDD-DVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 564 ~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~-~l~~~L~~L~~~k~kiL~~~~ 614 (728)
..+--||.+.......|..+|++.+|++.. .++++|..|. +-+++.+.+
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le--~eGlV~~~~ 60 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDME--RQGDVYRQG 60 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHH--HTTSEEEEC
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHH--HCCCEEecC
Confidence 445667766667778999999999999998 9999999997 456665543
No 41
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=74.44 E-value=1.2 Score=35.55 Aligned_cols=43 Identities=12% Similarity=0.096 Sum_probs=36.7
Q ss_pred eeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccC
Q 004841 667 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD 717 (728)
Q Consensus 667 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~ 717 (728)
|...++.++.++.++|.. +|..++..|.+-|+.|.++|+|+|.
T Consensus 7 Il~~L~~~g~vsv~eLa~--------~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQ--------TLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHH--------HTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 555667777888777766 6999999999999999999999997
No 42
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=74.36 E-value=3.5 Score=33.09 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=34.0
Q ss_pred HHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 567 ASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 567 ~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
..||.++.... .|+.||++.+|++...+.++|..|. +-+++.+.
T Consensus 20 ~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le--~eG~I~~~ 63 (82)
T 1oyi_A 20 CEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQ--RSAMVYSS 63 (82)
T ss_dssp HHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHH--HHTSSEEC
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEeC
Confidence 33444444444 9999999999999999999999996 34677665
No 43
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=74.36 E-value=2.4 Score=37.32 Aligned_cols=51 Identities=22% Similarity=0.293 Sum_probs=42.5
Q ss_pred EcHHHHHHHHhhcCCC--CcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 562 VTTYQASALLLFNSSD--RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~--~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
+|..|..||......+ ++|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le--~~Gli~r~~ 81 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLE--RKKLIYRYV 81 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHH--HCCCEeecC
Confidence 5678888888776554 89999999999999999999999997 457777653
No 44
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=73.95 E-value=2.1 Score=35.50 Aligned_cols=51 Identities=8% Similarity=0.061 Sum_probs=43.1
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHH----HHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 561 IVTTYQASALLLFNSSDRLSYSEI----MTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~~~~t~~ei----~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
.++..|..||..+.+.+.+|..+| ++.++++...+.+.|..|. +.+++.+.
T Consensus 5 ~lt~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le--~~gli~r~ 59 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLI--QEGFVKER 59 (99)
T ss_dssp SSBCHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHH--HCCCEEEE
Confidence 356789999988888889999999 8999999999999999997 44677654
No 45
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=73.84 E-value=3 Score=37.32 Aligned_cols=51 Identities=14% Similarity=0.218 Sum_probs=43.6
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 38 lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le--~~Glv~r~~ 88 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQ--RAGLIERRT 88 (152)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCeeecC
Confidence 577899999888777789999999999999999999999997 456776543
No 46
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=73.79 E-value=2.5 Score=35.29 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=39.7
Q ss_pred EcHHHHHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 562 VTTYQASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 562 vs~~Q~~iLllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
++..|..+|+.+-. .+.+|..||++.+|++...+.++|..|. +.+++.+.+
T Consensus 19 l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~--~~g~v~~~~ 70 (109)
T 2d1h_A 19 ITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLI--ELGLVVRTK 70 (109)
T ss_dssp CCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEeec
Confidence 35567766655433 6689999999999999999999999997 457776543
No 47
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=73.73 E-value=2.7 Score=34.25 Aligned_cols=43 Identities=7% Similarity=0.101 Sum_probs=36.5
Q ss_pred HHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 569 ALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 569 iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
|+...++.+.+|+.||++.+++++..+++-|..|. +.+.|.+.
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le--~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQTPQPLIDAMLERME--AMGKVVRI 49 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHH--TTCCSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 56667788899999999999999999999999997 44666655
No 48
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=73.71 E-value=3.2 Score=36.52 Aligned_cols=51 Identities=12% Similarity=0.232 Sum_probs=42.2
Q ss_pred EcHHHHHHHHhhcCCC--CcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 562 VTTYQASALLLFNSSD--RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~--~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
+|..|..||......+ .+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le--~~Gli~r~~ 84 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRME--IKKLLYRKV 84 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHH--HCCCEEeeC
Confidence 5678888888776655 89999999999999999999999997 456776543
No 49
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=73.40 E-value=2.5 Score=37.16 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=42.6
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
+|..|+.||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~--~~gli~r~ 81 (138)
T 1jgs_A 32 ITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLV--CKGWVERL 81 (138)
T ss_dssp SCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHH--HCCCEEec
Confidence 467899999888777789999999999999999999999997 44677654
No 50
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=73.37 E-value=3.2 Score=37.59 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=43.4
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 561 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
.++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 46 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le--~~glv~r~ 96 (162)
T 2fa5_A 46 GMAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLL--ERGFIRRE 96 (162)
T ss_dssp CCCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC-
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeee
Confidence 3577899999888777899999999999999999999999997 45777664
No 51
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=73.27 E-value=6.3 Score=32.73 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=43.7
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCeEEEec
Q 004841 564 TYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNS 629 (728)
Q Consensus 564 ~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~ 629 (728)
+....||....+ ++.|+.||++.+|++...+.++|..|. ..+++.+...|. .-.|+++.
T Consensus 23 ~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~--~~Glv~~~~~g~----~~~y~l~~ 81 (102)
T 3pqk_A 23 PVRLMLVCTLVE-GEFSVGELEQQIGIGQPTLSQQLGVLR--ESGIVETRRNIK----QIFYRLTE 81 (102)
T ss_dssp HHHHHHHHHHHT-CCBCHHHHHHHHTCCTTHHHHHHHHHH--HTTSEEEECSSS----CCEEEECS
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEeCC----EEEEEECc
Confidence 445566666655 569999999999999999999999997 467887654433 23566655
No 52
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=73.14 E-value=3.4 Score=33.18 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=40.8
Q ss_pred HHHHHHhhcCCC---CcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCeEEEec
Q 004841 566 QASALLLFNSSD---RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNS 629 (728)
Q Consensus 566 Q~~iLllFn~~~---~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~ 629 (728)
+..||.++.+.. .+|..+|++.+|++...+.+.|..|. +.+++.+.+. ....|.++.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le--~~G~I~~~g~-----~~~~W~i~~ 71 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA--KKGKLQKEAG-----TPPLWKIAV 71 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEESS-----SSCEEEEC-
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEecCC-----CCCeeEEeC
Confidence 455665555544 89999999999999999999999996 4566665431 125566554
No 53
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=73.08 E-value=2.3 Score=38.70 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=44.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
+|..|+.||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 44 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 94 (162)
T 3k0l_A 44 ISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLL--ANGWIEKAP 94 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCcCeEecC
Confidence 567899999888877899999999999999999999999997 457777653
No 54
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=71.85 E-value=2.5 Score=38.49 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=44.2
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
+|..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 51 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le--~~Glv~r~~ 101 (161)
T 3e6m_A 51 LPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLV--DEGLAARSI 101 (161)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEeeC
Confidence 567899999888777799999999999999999999999997 457887654
No 55
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=71.46 E-value=4 Score=35.44 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=39.3
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 563 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 563 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
++.+..||..+...+.+|+.+|++.+|++...+.++|..|. ..+++...+
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~--~~Glv~~~~ 90 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLY--KQGVVNFRK 90 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEC-
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEE
Confidence 34556677766655679999999999999999999999997 467776543
No 56
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=71.37 E-value=3 Score=36.67 Aligned_cols=51 Identities=16% Similarity=0.144 Sum_probs=43.2
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 561 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
.++..|..||.....++.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 28 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~--~~gli~~~ 78 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLE--ESGYIIRK 78 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEec
Confidence 3577899999888777789999999999999999999999997 34666654
No 57
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=70.70 E-value=3.3 Score=37.18 Aligned_cols=50 Identities=26% Similarity=0.288 Sum_probs=43.1
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
++..|..||......+.+|..+|++.++++...+.+.|..|. +.+++.+.
T Consensus 45 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le--~~glv~r~ 94 (153)
T 2pex_A 45 LTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQ--AAGLVTRT 94 (153)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHH--HCCCEeec
Confidence 477899999888777889999999999999999999999997 45677654
No 58
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=70.70 E-value=2 Score=37.74 Aligned_cols=50 Identities=10% Similarity=0.271 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~--~~gli~r~ 80 (139)
T 3bja_A 31 ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMK--RDGYVMTE 80 (139)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHH--HCCCeeec
Confidence 578899999888777889999999999999999999999997 34677654
No 59
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=70.50 E-value=2.5 Score=37.17 Aligned_cols=51 Identities=12% Similarity=0.159 Sum_probs=42.9
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 561 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
.++..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~--~~glv~r~ 85 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLD--KRGLIQRS 85 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHH--HTTCEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEee
Confidence 3577899999888776799999999999999999999999997 34666653
No 60
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=70.44 E-value=3.5 Score=37.82 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=42.7
Q ss_pred EcHHHHHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 562 VTTYQASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 562 vs~~Q~~iLllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
+|..|+.||..... .+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 51 lt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~GlV~r~~ 102 (166)
T 3deu_A 51 LTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLE--DKGLISRQT 102 (166)
T ss_dssp CCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEC-
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHH--HCCCEEeeC
Confidence 46789999987765 5679999999999999999999999997 457887653
No 61
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=70.17 E-value=2.8 Score=38.52 Aligned_cols=51 Identities=14% Similarity=0.261 Sum_probs=43.7
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 561 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
.++..|..||..+...+.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 42 ~lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~ 92 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLV--GAELIDRL 92 (168)
T ss_dssp SCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEec
Confidence 3578899999888777789999999999999999999999997 45777654
No 62
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=69.97 E-value=3.3 Score=32.95 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=43.1
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhC----CCHHHHHHHHHHhhhccccccccCC
Q 004841 561 IVTTYQASALLLFNSSDRLSYSEIMTQLN----LSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
.+|..|..||..+-+.+.+|..||++.++ ++...+.+.|..|. +.+++.+.+
T Consensus 6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~--~kGlv~r~~ 61 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLI--KKGALNHHK 61 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHH--HCCCeEEEe
Confidence 36788999998877777899999999996 68899999999997 457777654
No 63
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=69.86 E-value=3.5 Score=36.62 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=43.8
Q ss_pred EEcHHHHHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 561 IVTTYQASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
.++..|..||..... .+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 32 ~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le--~~glv~r~~ 84 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELE--RGGLIVRHA 84 (147)
T ss_dssp HHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHH--HCCCEeeCC
Confidence 357889999988876 7789999999999999999999999997 456776543
No 64
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=69.81 E-value=3.3 Score=37.52 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=43.2
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
++..|+.||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 50 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le--~~Gli~r~ 99 (162)
T 3cjn_A 50 LSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQ--ADGLVRRE 99 (162)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEec
Confidence 578899999888877889999999999999999999999997 44677654
No 65
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=69.63 E-value=2.6 Score=37.32 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=42.8
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
++..|+.||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~--~~glv~r~ 80 (145)
T 2a61_A 31 ITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLE--ADGYLTRT 80 (145)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHH--HCCCeeec
Confidence 578899999888777789999999999999999999999997 34677654
No 66
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=69.59 E-value=2.8 Score=37.07 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=42.3
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
+|..|+.||......+.+|..+|++.++++...+.+.|..|. +.+++.+.
T Consensus 27 lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le--~~gli~r~ 76 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLE--EQGFIYRQ 76 (144)
T ss_dssp CTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHH--HCCCEEee
Confidence 467788888887777789999999999999999999999997 34677654
No 67
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=69.32 E-value=5.4 Score=35.31 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=38.2
Q ss_pred EcHHHHHHHHhhc-CCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 562 VTTYQASALLLFN-SSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 562 vs~~Q~~iLllFn-~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
++..|..+|..+. ..+++|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~--~~G~v~r~ 74 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLE--ELGFVRKV 74 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 3455665554432 34679999999999999999999999997 45777765
No 68
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=69.04 E-value=1.4 Score=35.88 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=36.4
Q ss_pred eeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCC
Q 004841 667 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 718 (728)
Q Consensus 667 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 718 (728)
|...++.++.++.++|.. .|..+...|.+-|+.|.++|+|+|..
T Consensus 7 Il~~L~~~g~vsv~eLA~--------~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSA--------RLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHSCSEEHHHHHH--------HTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHcCCCcHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 455566777777777665 69999999999999999999999973
No 69
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=68.84 E-value=3.4 Score=36.79 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=42.6
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 40 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le--~~Glv~r~ 89 (150)
T 2rdp_A 40 ITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRME--RNGLVARV 89 (150)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHH--HCCCeeec
Confidence 577899999888777789999999999999999999999997 34666654
No 70
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=68.72 E-value=3.6 Score=36.98 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=42.7
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
++..|..||..+...+.+|..+|++.++++...+.+.|..|. +.+++.+.
T Consensus 42 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le--~~Gli~r~ 91 (154)
T 2eth_A 42 MKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLE--KRGLVVRE 91 (154)
T ss_dssp SBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEee
Confidence 578899999888776789999999999999999999999997 44677654
No 71
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=68.35 E-value=2.4 Score=37.46 Aligned_cols=50 Identities=20% Similarity=0.325 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
+|..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 35 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~--~~gli~r~ 84 (142)
T 2bv6_A 35 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRME--QVDLIKRE 84 (142)
T ss_dssp CCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEee
Confidence 577899999888777789999999999999999999999997 34677654
No 72
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=68.25 E-value=2.9 Score=37.53 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=43.4
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 561 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
.+|..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 34 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le--~~glv~r~ 84 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLE--QKNLIART 84 (155)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeec
Confidence 3578899999888777789999999999999999999999997 34677654
No 73
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=68.06 E-value=3.2 Score=36.81 Aligned_cols=51 Identities=22% Similarity=0.316 Sum_probs=43.5
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
+|..|..||..+...+.+|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 38 l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~--~~glv~r~~ 88 (147)
T 1z91_A 38 ITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRME--QQGLITRKR 88 (147)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHH--HHTSEECCB
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHH--HCCCEEecc
Confidence 578899999888777789999999999999999999999997 347776653
No 74
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=68.03 E-value=2.4 Score=38.40 Aligned_cols=51 Identities=12% Similarity=0.176 Sum_probs=42.8
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
+|..|..||......+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 48 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 98 (159)
T 3s2w_A 48 IGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLV--DEGYVFRQR 98 (159)
T ss_dssp CCTTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEec
Confidence 456788888877777889999999999999999999999997 457776653
No 75
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=67.93 E-value=2.9 Score=34.97 Aligned_cols=60 Identities=13% Similarity=0.241 Sum_probs=43.3
Q ss_pred hheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCCCCCCceeecC
Q 004841 664 DASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 728 (728)
Q Consensus 664 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Yia 728 (728)
+..|.+++-....++..+|.+.+.. .-.++...|...|+.|.++|||+|..+ ...|.|-|
T Consensus 37 e~~VL~~L~~~~~~t~~eL~~~l~~----~~~~s~sTVt~~L~rLe~KGlV~R~~~-gR~~~Y~p 96 (99)
T 2k4b_A 37 ELIVMRVIWSLGEARVDEIYAQIPQ----ELEWSLATVKTLLGRLVKKEMLSTEKE-GRKFVYRP 96 (99)
T ss_dssp CSHHHHHHHHHSCEEHHHHHHTCCG----GGCCCHHHHHHHHHHHHHTTSCEEEEE-TTEEEEEC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHhc----ccCCCHhhHHHHHHHHHHCCCEEEEeC-CCEEEEEE
Confidence 4555566655667777777764422 123578889999999999999999864 56888865
No 76
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=67.69 E-value=3.7 Score=36.54 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=24.7
Q ss_pred HhcCCCCCChhHHHHHHHhhhhhhhccc
Q 004841 689 QLGRMFKPDFKAIKKRIEDLITRDYLER 716 (728)
Q Consensus 689 ~l~~~F~~~~~~ik~~Ie~LIereyi~R 716 (728)
.+++++..++..|-+.|..|+++|||+|
T Consensus 56 ~LA~~~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 56 QLQEGMSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3445788899999999999999999999
No 77
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=67.59 E-value=4.5 Score=36.11 Aligned_cols=51 Identities=14% Similarity=0.245 Sum_probs=41.0
Q ss_pred EcHHHHHHHHhhc-CCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 562 VTTYQASALLLFN-SSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 562 vs~~Q~~iLllFn-~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
+|..|..||.... ..+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~Glv~r~~ 88 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELE--ERGLVVRTL 88 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHH--TTTSEEC--
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHH--HCCCEEeeC
Confidence 4678998888765 44578999999999999999999999997 457777653
No 78
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=67.36 E-value=2.3 Score=37.99 Aligned_cols=51 Identities=8% Similarity=0.158 Sum_probs=36.5
Q ss_pred EcHHHHHHHHhhcCC--CCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 562 VTTYQASALLLFNSS--DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 562 vs~~Q~~iLllFn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
+|..|+.||...... +.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 91 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLE--KKGYIERRI 91 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHH--HTTSBCCC-
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEeeC
Confidence 567888888877655 789999999999999999999999997 457777653
No 79
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=67.22 E-value=2.7 Score=36.99 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=42.7
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
+|..|+.||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 34 lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le--~~glv~r~ 83 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLE--RDGIVRRW 83 (142)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHH--HCCCEEee
Confidence 578899999888777789999999999999999999999997 34676654
No 80
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=66.87 E-value=2.4 Score=33.82 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=42.7
Q ss_pred heeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCCCCCCceeec
Q 004841 665 ASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYL 727 (728)
Q Consensus 665 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Yi 727 (728)
..|.+++-..+.++..+|...+-.. -..+...+...|+.|.++|||+|..+ ...+.|-
T Consensus 12 ~~vL~~L~~~~~~t~~ei~~~l~~~----~~~s~~Tv~~~l~rL~~kGlv~r~~~-gr~~~y~ 69 (82)
T 1p6r_A 12 LEVMKVIWKHSSINTNEVIKELSKT----STWSPKTIQTMLLRLIKKGALNHHKE-GRVFVYT 69 (82)
T ss_dssp HHHHHHHHTSSSEEHHHHHHHHHHH----SCCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhhc----CCccHHHHHHHHHHHHHCCCeEEEec-CCEEEEE
Confidence 3344455456778889998877542 23578889999999999999999874 4567774
No 81
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=66.75 E-value=8.9 Score=30.56 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=32.2
Q ss_pred HHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhh
Q 004841 568 SALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSC 604 (728)
Q Consensus 568 ~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~ 604 (728)
.|--+.|+...+|+.+|++.+|++++++..+|-.|..
T Consensus 12 ~VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaR 48 (82)
T 2l02_A 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLAR 48 (82)
T ss_dssp HHHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhc
Confidence 4455667777999999999999999999999999985
No 82
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=66.64 E-value=3.8 Score=34.69 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=38.5
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 563 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 563 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
++.+..||..+ ..+.+|..+|++.+|++...+.++|..|. +.+++...
T Consensus 20 ~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~--~~gli~~~ 67 (114)
T 2oqg_A 20 DETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQ--ACGLVESV 67 (114)
T ss_dssp CHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred ChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeeEE
Confidence 35567777766 44579999999999999999999999996 45777654
No 83
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=66.50 E-value=3.3 Score=36.67 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=42.5
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 561 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
.+|+.|..||......+. |..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 34 ~lt~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le--~~Glv~r~ 83 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLE--AKGLVRRI 83 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHH--HCCCEEec
Confidence 357789999988877777 999999999999999999999997 44777654
No 84
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=66.45 E-value=5 Score=33.74 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=37.9
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 563 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 563 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
++.+..||..+. ...+|+.||++.+|++...+.++|..|. +.+++...
T Consensus 25 ~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~--~~Glv~~~ 72 (106)
T 1r1u_A 25 DYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLK--SVHLVKAK 72 (106)
T ss_dssp SHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 345666666665 4578999999999999999999999997 45777654
No 85
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=66.44 E-value=4.3 Score=36.08 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=41.4
Q ss_pred EEEEcHHHHHHHHhhcC-----CCCcCHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004841 559 ELIVTTYQASALLLFNS-----SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 612 (728)
Q Consensus 559 ~l~vs~~Q~~iLllFn~-----~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 612 (728)
++-+|.-++.+|+.+-. ....|.++|++.+|++..++.+.|+.|.. -++|..
T Consensus 27 ~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~--KGlI~i 83 (135)
T 2v79_A 27 QLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQ--KGFLFI 83 (135)
T ss_dssp HHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHH--HTSCEE
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 45677888888876543 34689999999999999999999999984 356654
No 86
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=66.23 E-value=3.9 Score=36.67 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=41.1
Q ss_pred EcHHHHHHHHhh--cCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 562 VTTYQASALLLF--NSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 562 vs~~Q~~iLllF--n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
+|..|+.||... ++.+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 33 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le--~~Glv~r~~ 85 (147)
T 4b8x_A 33 LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLV--RSGLVAKRP 85 (147)
T ss_dssp CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--hCCCEEEee
Confidence 466787777655 455679999999999999999999999997 457777654
No 87
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=66.18 E-value=5.9 Score=32.79 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=43.4
Q ss_pred EEEcHHHHHHHHhhcCCCCcCHHHHHH-HhCCCHHHHHHHHHHhhhccccccc
Q 004841 560 LIVTTYQASALLLFNSSDRLSYSEIMT-QLNLSDDDVVRLLHSLSCAKYKILN 611 (728)
Q Consensus 560 l~vs~~Q~~iLllFn~~~~~t~~ei~~-~t~i~~~~l~~~L~~L~~~k~kiL~ 611 (728)
..++..|+.||......+..|..+|++ ..+++...+-+++.+|. +-+++.
T Consensus 12 ~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~--r~GlVe 62 (95)
T 1bja_A 12 DVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLI--KKGLVE 62 (95)
T ss_dssp TSSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHH--TTTSEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHH--HCCCee
Confidence 356788999999887777999999999 99999999999999997 456665
No 88
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=65.96 E-value=5.5 Score=36.91 Aligned_cols=66 Identities=8% Similarity=0.099 Sum_probs=42.9
Q ss_pred cCCceEEEEeEEcCeeEEEEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004841 542 YSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 612 (728)
Q Consensus 542 ~~lg~~~i~~~~~~~~~~l~vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 612 (728)
|+.+++.+...-. -...++..+..||.++.+...+|+.||++.+|++...+.+.|..|.. .+++..
T Consensus 8 ~~~~~~~~~~~~~---m~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~--~G~I~~ 73 (171)
T 2e1c_A 8 HHHSSGLVPRGSH---MRVPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRE--SGVIKK 73 (171)
T ss_dssp -------------------CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSSCC
T ss_pred ccccccccccccc---cccCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEe
Confidence 4455555554321 22356788889998888778999999999999999999999999973 466653
No 89
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=65.56 E-value=13 Score=33.89 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=41.2
Q ss_pred HHHHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCeEEEec
Q 004841 565 YQASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNS 629 (728)
Q Consensus 565 ~Q~~iLllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~ 629 (728)
+.+.+.+.-+. ...+|.++|++.+++|...+.+.|..|. +.+++.... | .++-|.+..
T Consensus 30 lr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~--~aGlv~s~r-G----~~GGy~Lar 88 (159)
T 3lwf_A 30 LTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLR--NAGIVKSIR-G----AHGGYVLNG 88 (159)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC-S----TTCEEEECS
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCeEEEec-C----CCCceEecC
Confidence 34444444443 3479999999999999999999999996 567876432 1 235677754
No 90
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=64.77 E-value=3.7 Score=31.51 Aligned_cols=45 Identities=7% Similarity=0.161 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCC-CCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccc
Q 004841 565 YQASALLLFNSS-DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN 611 (728)
Q Consensus 565 ~Q~~iLllFn~~-~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~ 611 (728)
..-.||.++.+. ..+|..||++.+|++...+.+.|..|.. .+++.
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~--~G~I~ 56 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKK--EDRVS 56 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHH--TTSEE
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEe
Confidence 344577666543 4799999999999999999999999974 34443
No 91
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=64.61 E-value=4.4 Score=33.25 Aligned_cols=48 Identities=10% Similarity=0.285 Sum_probs=39.3
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004841 563 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 612 (728)
Q Consensus 563 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 612 (728)
++.+..||..+...+.+|..+|++.+|++...+.++|..|. +.+++.+
T Consensus 15 ~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~--~~gli~~ 62 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLE--RNGLVKT 62 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred ChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEE
Confidence 56677788766555689999999999999999999999997 3466654
No 92
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=64.51 E-value=8.1 Score=34.74 Aligned_cols=51 Identities=16% Similarity=0.248 Sum_probs=42.2
Q ss_pred EcHHHHHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 562 VTTYQASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 562 vs~~Q~~iLllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
+|..|+.||..... .+..+..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 29 Lt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le--~~GlV~R~~ 80 (151)
T 4aik_A 29 LTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLE--EKGLITRHT 80 (151)
T ss_dssp CCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHH--hCCCeEeec
Confidence 57889999887754 4567889999999999999999999997 457777654
No 93
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=64.38 E-value=4.6 Score=37.93 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=43.1
Q ss_pred EcHHHHHHHHhhcC--CCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 562 VTTYQASALLLFNS--SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 562 vs~~Q~~iLllFn~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
+|..|..||..... .+++|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~~ 91 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLE--KNGYVDVIP 91 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEecc
Confidence 67889999987764 4689999999999999999999999997 457777653
No 94
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=64.23 E-value=14 Score=33.07 Aligned_cols=56 Identities=16% Similarity=0.152 Sum_probs=39.4
Q ss_pred HHHHHhhcCC-CCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCeEEEec
Q 004841 567 ASALLLFNSS-DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNS 629 (728)
Q Consensus 567 ~~iLllFn~~-~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~ 629 (728)
+.+.+.-+.. ..+|.++|++.+|+|...+.+.|..|. +.+++.... | .++.|.+..
T Consensus 16 ~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~--~aGlv~s~r-G----~~GGy~Lar 72 (143)
T 3t8r_A 16 LMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLR--NAGLIRSVR-G----AKGGYQLRV 72 (143)
T ss_dssp HHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECS-S----SSSEEEESS
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCEEEecC-C----CCCCeeecC
Confidence 3333433333 479999999999999999999999996 567776432 1 235677644
No 95
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=64.19 E-value=3.7 Score=36.76 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=42.6
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004841 561 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 612 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 612 (728)
.+|..|..||... ..+++|..+|++.+|++...+.+.+..|. +.+++.+
T Consensus 35 ~lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le--~~Glv~r 83 (151)
T 3kp7_A 35 GISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLL--NAELVKL 83 (151)
T ss_dssp TCCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHH--HTTSEEC
T ss_pred CCCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEe
Confidence 3578899999888 77899999999999999999999999997 4577765
No 96
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=64.18 E-value=9.1 Score=34.25 Aligned_cols=48 Identities=13% Similarity=0.236 Sum_probs=40.5
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004841 563 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 612 (728)
Q Consensus 563 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 612 (728)
+..+..||..+.++..+|..+|++.+|++...+.+.|..|. +.+++.+
T Consensus 2 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 49 (150)
T 2pn6_A 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLE--KDGVIKG 49 (150)
T ss_dssp CHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHH--HTTSSCC
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEE
Confidence 34567788888888899999999999999999999999997 4567654
No 97
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=63.92 E-value=12 Score=28.97 Aligned_cols=57 Identities=7% Similarity=0.155 Sum_probs=42.1
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCeEEEecCCC
Q 004841 566 QASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFT 632 (728)
Q Consensus 566 Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~~F~ 632 (728)
.-.|.-+|.++.-||+.+|.+.|+=|...|+..|..++ ++.+.+. -...|.+-+.|.
T Consensus 10 ~d~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~Ia-----~~~k~g~-----~~~~weLKpEyr 66 (69)
T 1bby_A 10 LDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIG-----VQNVKGI-----HKNTWELKPEYR 66 (69)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHHC-----CCBCCTT-----CCCBBCCCCSSC
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHHHH-----HHHcCCC-----CCCeeeCcHHHh
Confidence 34567789999999999999999999999999998875 4544431 134555555543
No 98
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=62.81 E-value=8 Score=35.46 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=35.4
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004841 566 QASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 612 (728)
Q Consensus 566 Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 612 (728)
++.+.+.-+....+|.++|++.+++|...+.+.|..|. +.+++..
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~--~aGlv~s 60 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLH--KHGYLTG 60 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHH--HTTSSEE
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEe
Confidence 44444555555679999999999999999999999997 5677654
No 99
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=62.47 E-value=3.7 Score=37.11 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=43.2
Q ss_pred EcHHHHHHHHhh-cCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 562 VTTYQASALLLF-NSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 562 vs~~Q~~iLllF-n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
++..|+.||... ...+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le--~~Gli~r~~ 96 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLI--KDGMVVKAM 96 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHH--HHTSEEEC-
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEeec
Confidence 578899999888 567789999999999999999999999997 457777653
No 100
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=62.16 E-value=4.4 Score=38.77 Aligned_cols=51 Identities=14% Similarity=0.041 Sum_probs=43.7
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
+|..|..||......+.+|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 46 Lt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le--~~GlV~r~~ 96 (207)
T 2fxa_A 46 LNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLE--ERGYLRFSK 96 (207)
T ss_dssp CCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHH--HHTSEEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEec
Confidence 578899999888777789999999999999999999999997 457777653
No 101
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=62.12 E-value=6.1 Score=43.86 Aligned_cols=129 Identities=16% Similarity=0.163 Sum_probs=83.8
Q ss_pred CCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCeEEEecCCCCCCcceeccCCChhhhhHHHHh
Q 004841 575 SSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIED 654 (728)
Q Consensus 575 ~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~~F~~~~~~i~i~~~~~~e~~~~~~~ 654 (728)
.++.+|+.+|...|+++...++.+|-.|+. .+++.-.+.+. +...|.+|.+ .-..+++.|- ...
T Consensus 30 ~~G~ltL~~I~~~t~L~~~~Vk~~L~vLIQ--h~lV~~~~~~~---~~~~Y~~~~~--~il~~lR~pk--------~l~- 93 (534)
T 2xub_A 30 RTGSQPLRVIAHDTGTSLDQVKKALCVLVQ--HNLVSYQVHKR---GVVEYEAQCS--RVLRMLRYPR--------YIY- 93 (534)
T ss_dssp HHCSEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEEETT---TEEEEEECHH--HHHGGGGHHH--------HHH-
T ss_pred hcCCcCHHHHHHHhCCCHHHHHHHHHHHHh--cCCeeEEeCCC---CcEEEEEChh--hHHHHHhhHH--------HHH-
Confidence 357899999999999999999999999974 56665432211 1234555532 1111222221 000
Q ss_pred HHHhhhhhhhheeeecccccccCChhHHHHHHHHHhcCC----CCCChhHHHHHHHhhhhhhhcccCCC
Q 004841 655 VDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRM----FKPDFKAIKKRIEDLITRDYLERDKS 719 (728)
Q Consensus 655 v~~~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~----F~~~~~~ik~~Ie~LIereyi~R~~~ 719 (728)
..+.+--..-|.|+-.+=..+.++.++|+..+...+... =.++...+...+..|++.+||.|.+.
T Consensus 94 ~i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~~ 162 (534)
T 2xub_A 94 TTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS 162 (534)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred HHHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCCCEEeCCC
Confidence 111111122356666666788999999999888765321 13578899999999999999999873
No 102
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=61.59 E-value=7.8 Score=33.91 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=40.5
Q ss_pred EEEcHHHHHHHHhhc---C--CCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 560 LIVTTYQASALLLFN---S--SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 560 l~vs~~Q~~iLllFn---~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
+-++.-|+.||+.+- + ....|..+|++.+|++...+.++|..|. +.++|.+.+
T Consensus 28 lgLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le--~kGlI~~~~ 85 (128)
T 2vn2_A 28 LGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLL--QKGMIAIEE 85 (128)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHH--HTTSSEECC
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEe
Confidence 446677777775542 2 2348999999999999999999999997 457777653
No 103
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=61.55 E-value=4.1 Score=34.47 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=36.1
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 566 QASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 566 Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
+..||..+.+ +.+|+.||++.+|++...+.++|..|. +.+++...
T Consensus 27 r~~IL~~L~~-~~~s~~eLa~~lgis~stvs~~L~~L~--~~GlV~~~ 71 (108)
T 2kko_A 27 RLQILDLLAQ-GERAVEAIATATGMNLTTASANLQALK--SGGLVEAR 71 (108)
T ss_dssp THHHHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 4456655554 678999999999999999999999997 45777654
No 104
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=60.67 E-value=8.2 Score=34.61 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=41.1
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 612 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 612 (728)
++..+..||..+.+...+|+.+|++.+|++...+.+.|..|. +.+++.+
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 53 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLE--SRGVVQG 53 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEE
Confidence 566778888888777789999999999999999999999997 3566653
No 105
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=59.65 E-value=6.4 Score=38.81 Aligned_cols=50 Identities=16% Similarity=0.295 Sum_probs=42.3
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
++..|..||..+.+.+.+|..||++.+|++...+.+.|..|. +.+++.+.
T Consensus 150 L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le--~~GlV~r~ 199 (244)
T 2wte_A 150 YSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELK--KFGILTQK 199 (244)
T ss_dssp CCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEe
Confidence 466788899887666789999999999999999999999997 45777653
No 106
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=59.25 E-value=19 Score=31.19 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=35.0
Q ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCeEEEec
Q 004841 576 SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNS 629 (728)
Q Consensus 576 ~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~ 629 (728)
...+|..+|++.+|+|...+.+.|..|. +.+++...+ | .++.|.+..
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~--~~Glv~~~~-g----~~ggy~L~~ 70 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLR--NAGLVKSIR-G----AYGGYVLGS 70 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHH--HTTSEEEC---------CCEEESS
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEecC-C----CCCceEeCC
Confidence 4579999999999999999999999997 467776542 1 134576654
No 107
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=59.25 E-value=8.5 Score=38.25 Aligned_cols=56 Identities=14% Similarity=0.289 Sum_probs=44.5
Q ss_pred HHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCeEEEecC
Q 004841 567 ASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 630 (728)
Q Consensus 567 ~~iLllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~~ 630 (728)
..||.+|.+ ...+|+.||++.+|++...+.+.|..|. ..+.|.+.+. +..|.+...
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~--~~G~v~~~~~------~~~Y~lG~~ 65 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQ--EAGFVEQVEG------ARSYRLGPQ 65 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHH--HTTSEEECSS------SSEEEECTT
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEcCC------CCcEEcCHH
Confidence 357788886 4689999999999999999999999997 4678877642 356776544
No 108
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=57.36 E-value=12 Score=36.72 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=43.4
Q ss_pred HHHHHhhcCCC-CcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCeEEEecC
Q 004841 567 ASALLLFNSSD-RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 630 (728)
Q Consensus 567 ~~iLllFn~~~-~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~~ 630 (728)
..||.+|.+.. .+|+.||++.+|++...+.+.|..|. +.+++.+.+. +..|.+...
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~--~~G~v~~~~~------~~~Y~lg~~ 65 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALE--EEFLVEALGP------AGGFRLGPA 65 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHH--TTTSEEECGG------GCEEEECSH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeCC------CCeEEECHH
Confidence 35777787654 79999999999999999999999997 4678876532 356776543
No 109
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=57.28 E-value=10 Score=33.68 Aligned_cols=49 Identities=18% Similarity=0.322 Sum_probs=40.1
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 612 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 612 (728)
++..+..||..+.+...+|..||++.+|++...+.+.|..|.. .+++.+
T Consensus 3 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 51 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLES--FGIIKQ 51 (144)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEE
Confidence 3456777887777777899999999999999999999999973 466653
No 110
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=56.38 E-value=17 Score=27.66 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=33.6
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhh
Q 004841 561 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 603 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 603 (728)
.+|.-|..|+.++ ....|..||++.+|++...+...+..+.
T Consensus 11 ~L~~~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 11 LLTKREREVFELL--VQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp CCCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3577788888777 3467999999999999999998887764
No 111
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=55.57 E-value=8.6 Score=33.92 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=39.2
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004841 563 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 612 (728)
Q Consensus 563 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 612 (728)
+..+..||..+..+..+|+.+|++.+|++...+.+.|..|.. .+++.+
T Consensus 3 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 50 (141)
T 1i1g_A 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEE--KGIIEG 50 (141)
T ss_dssp CSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--HTSSCC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEec
Confidence 345667787777677899999999999999999999999973 466654
No 112
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=55.42 E-value=11 Score=31.35 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=41.2
Q ss_pred EEcHHHHHHHHhhcCC------CCcCHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004841 561 IVTTYQASALLLFNSS------DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 612 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~------~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 612 (728)
-+++.|..+|..+.+. ..++..+|++.++++...+.++|..|. +.+++..
T Consensus 13 gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe--~~GLV~r 68 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQ--AAGLADV 68 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHH--HCCCEEe
Confidence 3678899998866543 579999999999999999999999997 4566654
No 113
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=55.20 E-value=16 Score=29.60 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=35.6
Q ss_pred EEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhh
Q 004841 560 LIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 603 (728)
Q Consensus 560 l~vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 603 (728)
..+|.-+..||.++- ..+|..||++.+|++...++.++..+.
T Consensus 28 ~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 28 DVLTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIF 69 (90)
T ss_dssp -CCCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456788888888776 478999999999999999999988775
No 114
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=55.16 E-value=6.4 Score=33.95 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=42.9
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhC----CCHHHHHHHHHHhhhccccccccC
Q 004841 561 IVTTYQASALLLFNSSDRLSYSEIMTQLN----LSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
.+|..|..||..+-+.+++|..||++.++ ++...+.+.|..|. +-+++.+.
T Consensus 7 ~Lt~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe--~kGlv~R~ 61 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLY--KKEIIKRY 61 (126)
T ss_dssp CCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHH--HCCceEEE
Confidence 46889999998887778899999999997 57899999999997 45777664
No 115
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=55.15 E-value=11 Score=34.91 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=41.8
Q ss_pred EEEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccc
Q 004841 559 ELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN 611 (728)
Q Consensus 559 ~l~vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~ 611 (728)
...++..+..||.+......+|+.+|++.+|++...+.+.|..|.. .+++.
T Consensus 12 ~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~--~G~I~ 62 (171)
T 2ia0_A 12 EIHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQE--RGVIE 62 (171)
T ss_dssp --CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEE
T ss_pred cCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEE
Confidence 3456778888888888778899999999999999999999999973 45664
No 116
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=55.04 E-value=12 Score=32.99 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=42.5
Q ss_pred EcHHHHHHHHhhcC-CCCcCHHHHHHHhC----CCHHHHHHHHHHhhhccccccccC
Q 004841 562 VTTYQASALLLFNS-SDRLSYSEIMTQLN----LSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 562 vs~~Q~~iLllFn~-~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
+|..|..||..+-+ .+.+|..||++.++ ++...+.+.|..|. +-+++.+.
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe--~kGlv~r~ 61 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLA--KKNLVLQI 61 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHH--HCCCEEEE
Confidence 57889999988876 57899999999998 79999999999997 45777664
No 117
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=54.78 E-value=14 Score=27.31 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=30.4
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHh-----CCCHHHHHHHHHHh
Q 004841 566 QASALLLFNSSDRLSYSEIMTQL-----NLSDDDVVRLLHSL 602 (728)
Q Consensus 566 Q~~iLllFn~~~~~t~~ei~~~t-----~i~~~~l~~~L~~L 602 (728)
+..|+.+.+....+|.+||++.+ +++...+.+.|..+
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 44455556667789999999999 99999999999855
No 118
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=54.61 E-value=11 Score=32.19 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=38.9
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 563 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 563 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
++.+..||..+.+ ...++.||++.+|++...+.++|..|. ..+++....
T Consensus 20 ~~~r~~IL~~L~~-~~~~~~eLa~~lgis~stvs~~L~~L~--~~GlV~~~~ 68 (118)
T 2jsc_A 20 DPTRCRILVALLD-GVCYPGQLAAHLGLTRSNVSNHLSCLR--GCGLVVATY 68 (118)
T ss_dssp SHHHHHHHHHHHT-TCCSTTTHHHHHSSCHHHHHHHHHHHT--TTTSEEEEE
T ss_pred CHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEEEE
Confidence 4566777776664 468999999999999999999999996 457776543
No 119
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=54.52 E-value=8.4 Score=30.52 Aligned_cols=59 Identities=5% Similarity=0.105 Sum_probs=43.1
Q ss_pred heeeeccccc--ccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCCCCCCceee
Q 004841 665 ASIVRIMKSR--KVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRY 726 (728)
Q Consensus 665 A~IVRimK~~--k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Y 726 (728)
..|...+... +.++..+|...+.+.. ...+...|-+.++.|.+.|+|.|...+.+...|
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~---~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMG---EEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 3455566554 5799999999876532 256889999999999999999997653334444
No 120
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=53.78 E-value=14 Score=33.23 Aligned_cols=46 Identities=11% Similarity=0.092 Sum_probs=35.5
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 566 QASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 566 Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
.+.+.+.-+....+|..+|++.+++|...+.+.|..|. +.+++...
T Consensus 18 ~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~--~~Glv~s~ 63 (149)
T 1ylf_A 18 HILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLK--QAGFVYVN 63 (149)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEC
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEc
Confidence 34444444444579999999999999999999999997 56777643
No 121
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=53.62 E-value=5.1 Score=34.46 Aligned_cols=51 Identities=12% Similarity=0.196 Sum_probs=42.5
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhC----CCHHHHHHHHHHhhhccccccccC
Q 004841 561 IVTTYQASALLLFNSSDRLSYSEIMTQLN----LSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
.+|..|..||....+.+.+|..+|++.++ ++...+.+.|..|. +.+++.+.
T Consensus 7 ~lt~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~--~~Glv~r~ 61 (123)
T 1okr_A 7 EISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLY--KKGFIDRK 61 (123)
T ss_dssp CCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred cCCHHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHH--HCCCeEEE
Confidence 46788999998776677899999999999 77999999999997 44677654
No 122
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=53.52 E-value=12 Score=33.66 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=40.5
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccc
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN 611 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~ 611 (728)
++..+..||.++.+...+|+.+|++.+|++...+.+.|..|.. .+++.
T Consensus 6 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~ 53 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQ--AGIIT 53 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHH--HTSEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--cCCcc
Confidence 4566778888887778999999999999999999999999973 45665
No 123
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=52.98 E-value=13 Score=33.38 Aligned_cols=49 Identities=10% Similarity=0.223 Sum_probs=40.7
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 612 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 612 (728)
++..+..||.++.+....|+.+|++.+|++...+.+.|..|.. .+++..
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 53 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRE--SGVIKK 53 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHH--HTSSCC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEE
Confidence 4566778888887778899999999999999999999999973 456653
No 124
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=52.93 E-value=20 Score=28.44 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=33.4
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhh
Q 004841 561 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 603 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 603 (728)
.+|.-|..|+.++ ...+|.+||++.+|++...++..+....
T Consensus 21 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 21 QLTPRERDILKLI--AQGLPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp GSCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3567777788776 3568999999999999999998887664
No 125
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=52.76 E-value=16 Score=31.60 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=37.1
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 564 TYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 564 ~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
+.+..||..+.+ +..++.+|++.+|++...+-++|..|.. .+++...
T Consensus 46 ~~rl~IL~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le~--~Glv~~~ 92 (122)
T 1r1t_A 46 PNRLRLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLRN--LRLVSYR 92 (122)
T ss_dssp HHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEE
Confidence 455666666654 5789999999999999999999999973 5676543
No 126
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=52.27 E-value=16 Score=32.58 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=36.6
Q ss_pred EcHHHHHHHHhhcCC-----CCcCHHHHHHHhCCCHHHHHHHHHHhhhcccccc
Q 004841 562 VTTYQASALLLFNSS-----DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKIL 610 (728)
Q Consensus 562 vs~~Q~~iLllFn~~-----~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL 610 (728)
+|+.|+.||...... +.+|..+|++.++++...+.+.+..|.. .+++
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~--~glV 82 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRR--DGLV 82 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHH--TTSB
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHH--CCCE
Confidence 567899888777544 3589999999999999999999999973 4565
No 127
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=51.85 E-value=6.7 Score=32.26 Aligned_cols=53 Identities=8% Similarity=0.096 Sum_probs=37.8
Q ss_pred eeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCCCCCCc
Q 004841 667 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNM 723 (728)
Q Consensus 667 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~ 723 (728)
|...+...+.++..+|..++. ..+..+...+-+.|..|.++|||+|..+.+..
T Consensus 13 iL~~l~~~~~~~~~el~~~la----~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~ 65 (99)
T 1tbx_A 13 VLAYLYDNEGIATYDLYKKVN----AEFPMSTATFYDAKKFLIQEGFVKERQERGEK 65 (99)
T ss_dssp HHHHHTTCTTCBHHHHHHHHH----TTSCCCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred HHHHHHHcCCcCHHHHHHHHH----HHcCCCHHHHHHHHHHHHHCCCEEEEecCCce
Confidence 334444456777777755443 35677899999999999999999997654333
No 128
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=51.62 E-value=13 Score=36.16 Aligned_cols=152 Identities=14% Similarity=0.198 Sum_probs=83.1
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhcccccccc-CCCCC-CCCCCCeEEEecCCC---------
Q 004841 564 TYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK-EPNTK-TISPTDHFEFNSKFT--------- 632 (728)
Q Consensus 564 ~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~-~~~~~-~i~~~~~~~~N~~F~--------- 632 (728)
.....||.+..+ .++|+.+|++.+|++...+.++|..|. +.+++.. ...+. .-.+.-.|.+|....
T Consensus 12 ~~R~~IL~~L~~-g~~s~~ELa~~lglS~stVs~hL~~Le--~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~~~~~l~~~~ 88 (232)
T 2qlz_A 12 KVRRDLLSHLTC-MECYFSLLSSKVSVSSTAVAKHLKIME--REGVLQSYEKEERFIGPTKKYYKISIAKSYVFTLTPEM 88 (232)
T ss_dssp HHHHHHHHHHTT-TTTCSSSSCTTCCCCHHHHHHHHHHHH--HTTSEEEEEECC-----CEEEEEECCCEEEEEEEETTE
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeeecCCCCCCccEEEEEccchhhHHHHHHHH
Confidence 445566666654 679999999999999999999999997 4577765 22221 011223455554311
Q ss_pred ----------CCCcceeccCCChh--------------hhhHHHHhHHHhhhhhhhheeeeccccccc-----CChhHHH
Q 004841 633 ----------DKMRRIKIPLPPVD--------------EKKKVIEDVDKDRRYAIDASIVRIMKSRKV-----LGHQQLV 683 (728)
Q Consensus 633 ----------~~~~~i~i~~~~~~--------------e~~~~~~~v~~~R~~~i~A~IVRimK~~k~-----l~~~~L~ 683 (728)
.+...+.|+....+ +..+...+..+ -...+++.+-.+|+..|. +.-.+.-
T Consensus 89 ~w~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~v~~~~~~~~~~~~~~~le~ig~~~~~ 167 (232)
T 2qlz_A 89 FWYKGLDLGDAELRDFEISLSGLDTEPSTLKEMITDFIKANKELEKVLE-AFKTIESYRSSLMRKIKEAYLKEIGDMTQL 167 (232)
T ss_dssp EEEEEEECCSCCCCCEEEECTTSCSCCCSHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHHHHhhccccccchhhhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCccHH
Confidence 00111111111000 00111111121 224556666666655443 1111222
Q ss_pred HHHH----------HHhcCCCCCChhHHHHHHHhhhhhhhcccCCC
Q 004841 684 LECV----------EQLGRMFKPDFKAIKKRIEDLITRDYLERDKS 719 (728)
Q Consensus 684 ~~v~----------~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~ 719 (728)
.++. ..++.+...+++.+...+..|.+.|.++|..+
T Consensus 168 ~~l~~~l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~~~ 213 (232)
T 2qlz_A 168 AILHYLLLNGRATVEELSDRLNLKEREVREKISEMARFVPVKIIND 213 (232)
T ss_dssp HHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEETT
T ss_pred HHHHHHHhcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEecC
Confidence 2222 23334566788999999999999999987654
No 129
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=50.93 E-value=5.5 Score=36.36 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=39.4
Q ss_pred EcHHHHHHHHhhcC--CCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 562 VTTYQASALLLFNS--SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 562 vs~~Q~~iLllFn~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
+|..|..||..... .+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 96 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLD--DRGLVLRTR 96 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEeecC
Confidence 46788888887766 3589999999999999999999999997 457777653
No 130
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=50.55 E-value=15 Score=33.36 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=40.6
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 612 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 612 (728)
++..+..||..+.+...+|+.||++.+|++...+.+.|..|.. .+++.+
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 56 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLED--AGIVRQ 56 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEee
Confidence 4566777888887777899999999999999999999999973 456653
No 131
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=49.54 E-value=8.4 Score=33.73 Aligned_cols=27 Identities=4% Similarity=0.129 Sum_probs=23.8
Q ss_pred CCCCCChhHHHHHHHhhhhhhhcccCC
Q 004841 692 RMFKPDFKAIKKRIEDLITRDYLERDK 718 (728)
Q Consensus 692 ~~F~~~~~~ik~~Ie~LIereyi~R~~ 718 (728)
.+...+...|.++|..|+++|||+|..
T Consensus 59 ~~l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 59 ERMTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp HTSSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred HHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 357788999999999999999999964
No 132
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=49.45 E-value=12 Score=40.61 Aligned_cols=52 Identities=19% Similarity=0.161 Sum_probs=45.4
Q ss_pred EEcHHHHHHHHhhcCC--CCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 561 IVTTYQASALLLFNSS--DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
.+|..|..||....++ +.+|..||++.++++...+.+.|..|. +.+++.+.+
T Consensus 401 ~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le--~~g~v~r~~ 454 (487)
T 1hsj_A 401 NLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLK--DLKLLSKKR 454 (487)
T ss_dssp CCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHH--TTTTSCCEE
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeecC
Confidence 4688999999988877 889999999999999999999999997 567887653
No 133
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=49.40 E-value=14 Score=36.54 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=43.3
Q ss_pred EEcHHHHHHHHhhcCCC--CcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 561 IVTTYQASALLLFNSSD--RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~~--~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
.+|..|..||......+ .+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 155 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe--~~GlV~R~~ 208 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLK--KQGYLIKER 208 (250)
T ss_dssp SSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHH--HHTSSEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEeeC
Confidence 35778999998776554 59999999999999999999999997 457887754
No 134
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=49.28 E-value=20 Score=31.88 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=34.0
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 566 QASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 566 Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
.+.+.+.-+.. . |.++|++.+++|...+.+.|..|. +.+++...
T Consensus 13 ~~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~--~aGlv~s~ 56 (145)
T 1xd7_A 13 HILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLK--KADILTSR 56 (145)
T ss_dssp HHHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHH--HTTSEECC
T ss_pred HHHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHH--HCCceEee
Confidence 34444444443 5 999999999999999999999997 67888644
No 135
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=49.27 E-value=16 Score=32.55 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=40.5
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccc
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN 611 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~ 611 (728)
++..+..||.++.+...+|..+|++.+|++...+.+.|..|.. .+++.
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~ 54 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKK--LGIIR 54 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHH--HTSEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEE
Confidence 4566778888888878999999999999999999999999973 45664
No 136
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=48.97 E-value=12 Score=37.56 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=36.1
Q ss_pred HHHHhhcCC-CCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 568 SALLLFNSS-DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 568 ~iLllFn~~-~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
.||.+|.+. ..+|+.||++.+|+|...+.+.|..|.. .+.|.+.+
T Consensus 34 ~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~--~G~v~~~~ 79 (275)
T 3mq0_A 34 RILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTE--LDLLARSA 79 (275)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHH--TTSEEECT
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEECC
Confidence 478888765 4799999999999999999999999974 57887653
No 137
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=48.67 E-value=11 Score=31.11 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=35.1
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004841 563 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 612 (728)
Q Consensus 563 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 612 (728)
++....||..+-..++.|+.||++.+|++...+-++|..|. .. ++..
T Consensus 26 ~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~--~~-lv~~ 72 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMR--GK-VLKR 72 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHB--TT-TBEE
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HH-hhhh
Confidence 44555666333334579999999999999999999999996 34 5543
No 138
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=48.58 E-value=17 Score=30.87 Aligned_cols=46 Identities=11% Similarity=0.173 Sum_probs=37.8
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004841 564 TYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 612 (728)
Q Consensus 564 ~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 612 (728)
..|..||..+.+ ...|+.+|++.+|++...+.++|..|.. .+++..
T Consensus 32 ~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le~--~Glv~~ 77 (119)
T 2lkp_A 32 PSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLRN--LGLVVG 77 (119)
T ss_dssp HHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHHH--HCSEEE
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 567777777766 6789999999999999999999999974 466654
No 139
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=48.43 E-value=13 Score=31.89 Aligned_cols=49 Identities=10% Similarity=0.151 Sum_probs=38.5
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 563 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 563 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
++....||.++.+ ++.|+.+|++.+|++...+-++|..|. +.+++...+
T Consensus 17 ~~~R~~Il~~L~~-~~~~~~eLa~~l~is~~tvs~hL~~L~--~~GlV~~~~ 65 (118)
T 3f6o_A 17 DPTRRAVLGRLSR-GPATVSELAKPFDMALPSFMKHIHFLE--DSGWIRTHK 65 (118)
T ss_dssp SHHHHHHHHHHHT-CCEEHHHHHTTCCSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHhCcCHHHHHHHHHHHH--HCCCeEEEe
Confidence 3455566666654 578999999999999999999999997 467776543
No 140
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=48.18 E-value=15 Score=30.87 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=31.5
Q ss_pred cCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 574 NSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 574 n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
..++.+|..+|++.+|++...+.++|..|.. .+++...
T Consensus 29 ~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~--~GlV~~~ 66 (110)
T 1q1h_A 29 DKGTEMTDEEIANQLNIKVNDVRKKLNLLEE--QGFVSYR 66 (110)
T ss_dssp HHCSCBCHHHHHHTTTSCHHHHHHHHHHHHH--HTSCEEE
T ss_pred HcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 4455799999999999999999999999974 4666544
No 141
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.62 E-value=18 Score=29.86 Aligned_cols=51 Identities=10% Similarity=0.158 Sum_probs=42.5
Q ss_pred EEcHHHHHHHHhhcC--CCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 561 IVTTYQASALLLFNS--SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
.++..|..|+-+..+ ...++..+|...++++...+.++|..|.. -+++...
T Consensus 34 ~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~--k~lIK~V 86 (95)
T 2yu3_A 34 GSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIKAV 86 (95)
T ss_dssp SCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh--CCCEEEe
Confidence 568899999988876 56799999999999999999999999974 3555543
No 142
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=47.55 E-value=24 Score=27.69 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=33.1
Q ss_pred HHHHHhhcCCCCcCHHHHHHHhCC-CHHHHHHHHHHhhh
Q 004841 567 ASALLLFNSSDRLSYSEIMTQLNL-SDDDVVRLLHSLSC 604 (728)
Q Consensus 567 ~~iLllFn~~~~~t~~ei~~~t~i-~~~~l~~~L~~L~~ 604 (728)
..|--+.|+...+|+.+|++.+|+ +++++..+|-.|..
T Consensus 13 G~VW~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaR 51 (77)
T 2l01_A 13 GQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLR 51 (77)
T ss_dssp HHHHHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhh
Confidence 345566788889999999999999 99999999999985
No 143
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=47.42 E-value=25 Score=27.14 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=32.1
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhh
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 603 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 603 (728)
+|.-|..|+.++ ...+|..||++.+|++...+...+....
T Consensus 17 L~~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 17 LSERERQVLSAV--VAGLPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp HCHHHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456677777776 4578999999999999999988877654
No 144
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=46.70 E-value=22 Score=29.06 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=34.2
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhh
Q 004841 561 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 603 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 603 (728)
.+|.-|..|+.++ ...+|..||++.+|++...++..+....
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4677788888777 4578999999999999999998887764
No 145
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=46.51 E-value=14 Score=30.03 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=35.0
Q ss_pred HHHHHHhhcCCC-CcCHHHHHHHhCCCHHH-HHHHHHHhhhccccccc
Q 004841 566 QASALLLFNSSD-RLSYSEIMTQLNLSDDD-VVRLLHSLSCAKYKILN 611 (728)
Q Consensus 566 Q~~iLllFn~~~-~~t~~ei~~~t~i~~~~-l~~~L~~L~~~k~kiL~ 611 (728)
+..+|..+...+ .+|..+|++.+|++... +.+.|..|. +.+++.
T Consensus 17 ~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le--~~Glv~ 62 (95)
T 2pg4_A 17 ILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLI--RAGLVK 62 (95)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHH--HTTSEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHH--HCCCee
Confidence 455666666655 79999999999999999 999999997 345554
No 146
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=46.25 E-value=23 Score=34.76 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=41.5
Q ss_pred HHHHHhhcCCC-CcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCeEEEec
Q 004841 567 ASALLLFNSSD-RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNS 629 (728)
Q Consensus 567 ~~iLllFn~~~-~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~ 629 (728)
..||.+|.+.. .+|+.||++.+|++...+.+.|..|. +.+++.+. .+..|.+..
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~--~~G~v~~~-------~~~~Y~lg~ 65 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLE--EKGFVLRK-------KDKRYVPGY 65 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEC-------TTSCEEECT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEC-------CCCcEEECH
Confidence 45777776554 79999999999999999999999997 45777653 134566654
No 147
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=45.90 E-value=5.4 Score=31.58 Aligned_cols=51 Identities=14% Similarity=0.289 Sum_probs=39.1
Q ss_pred eeeecccccc---cCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCCCCCCce
Q 004841 666 SIVRIMKSRK---VLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMF 724 (728)
Q Consensus 666 ~IVRimK~~k---~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y 724 (728)
.|..+|+... .++..+|-.. +..+...|.+.|..|.+.|+|+|.++.+..|
T Consensus 18 ~IL~~L~~~~~~~~~t~~eLA~~--------Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W 71 (77)
T 1qgp_A 18 RILKFLEELGEGKATTAHDLSGK--------LGTPKKEINRVLYSLAKKGKLQKEAGTPPLW 71 (77)
T ss_dssp HHHHHHHHHCSSSCEEHHHHHHH--------HCCCHHHHHHHHHHHHHHTSEEEECSSSCEE
T ss_pred HHHHHHHHcCCCCCcCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEecCCCCCce
Confidence 3556788777 7888877663 3456788999999999999999987655443
No 148
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=45.70 E-value=19 Score=35.67 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=37.3
Q ss_pred HHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 568 SALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 568 ~iLllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
.||.+|.. ...+|+.||++.+|++...+.+.|..|. ..+++.+.+
T Consensus 27 ~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~--~~G~v~~~~ 72 (260)
T 2o0y_A 27 DLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMC--ARSVLTSRA 72 (260)
T ss_dssp HHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEECT
T ss_pred HHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEECC
Confidence 57777864 4689999999999999999999999997 457777653
No 149
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=45.67 E-value=28 Score=31.56 Aligned_cols=45 Identities=11% Similarity=0.249 Sum_probs=37.7
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccc
Q 004841 565 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN 611 (728)
Q Consensus 565 ~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~ 611 (728)
....||.+..++..+|+.+|++.+|++...+.+.|..|.. .+++.
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~--~g~i~ 48 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEE--DGVIR 48 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHH--TTSSC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCee
Confidence 3456777888888999999999999999999999999973 45655
No 150
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=45.18 E-value=8.9 Score=33.24 Aligned_cols=58 Identities=14% Similarity=0.318 Sum_probs=41.6
Q ss_pred hhhheeeeccccccc--CChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCC--CCCC--ceeec
Q 004841 662 AIDASIVRIMKSRKV--LGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK--SNPN--MFRYL 727 (728)
Q Consensus 662 ~i~A~IVRimK~~k~--l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~--~d~~--~y~Yi 727 (728)
..++.|.+++..... ++..+|-..+ ..+...+-+.|+.|.++|||.|.. .|+. .|.|.
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l--------~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~ 89 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSL--------KLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYK 89 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEe
Confidence 346667777766655 8888887644 357889999999999999999853 3333 35554
No 151
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=44.87 E-value=12 Score=32.10 Aligned_cols=59 Identities=22% Similarity=0.369 Sum_probs=41.6
Q ss_pred hheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCCCCCCceeec
Q 004841 664 DASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYL 727 (728)
Q Consensus 664 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Yi 727 (728)
|..|.+++-....++..+|...+.. .-.++...+...|+.|.++|||+|..++ ..+.|.
T Consensus 12 q~~vL~~L~~~~~~t~~el~~~l~~----~~~~~~~Tvt~~l~rLe~kGlv~R~~~~-r~~~~~ 70 (126)
T 1sd4_A 12 EWDVMNIIWDKKSVSANEIVVEIQK----YKEVSDKTIRTLITRLYKKEIIKRYKSE-NIYFYS 70 (126)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHT----TSCCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHhh----cCCCChhhHHHHHHHHHHCCceEEEeCC-CeEEEE
Confidence 3344455555567788888776542 1245788899999999999999998754 466664
No 152
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=44.61 E-value=4.1 Score=34.05 Aligned_cols=52 Identities=25% Similarity=0.201 Sum_probs=41.4
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhC----CCHHHHHHHHHHhhhccccccccCC
Q 004841 561 IVTTYQASALLLFNSSDRLSYSEIMTQLN----LSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
.+|..|..||..+-+.+.+|..||++.++ ++...+.+.|..|. +.+++.+.+
T Consensus 32 ~LT~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe--~KGlV~R~~ 87 (99)
T 2k4b_A 32 NVSNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLV--KKEMLSTEK 87 (99)
T ss_dssp CCCCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHH--HTTSCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHH--HCCCEEEEe
Confidence 45677888887776667899999999997 45789999999997 457777654
No 153
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=42.88 E-value=11 Score=29.88 Aligned_cols=43 Identities=7% Similarity=0.004 Sum_probs=31.8
Q ss_pred eeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccC
Q 004841 667 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD 717 (728)
Q Consensus 667 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~ 717 (728)
|.+.+...+.++..+|-+ .+..+...+.+.+..|.+.|+|++.
T Consensus 5 Il~~L~~~~~~s~~eLa~--------~lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 5 ILEFLNRHNGGKTAEIAE--------ALAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHSCCCCHHHHHH--------HHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCCHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 444455556677776665 3456788899999999999999964
No 154
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=41.54 E-value=23 Score=30.29 Aligned_cols=59 Identities=7% Similarity=-0.003 Sum_probs=50.3
Q ss_pred hhhhhhhheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccC
Q 004841 658 DRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD 717 (728)
Q Consensus 658 ~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~ 717 (728)
-++-.++.+|..++. .+.+.--+|...+.+.....+.++...+-..+..|.++|||++.
T Consensus 8 ~~~g~l~~~IL~~L~-~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~ 66 (116)
T 3f8b_A 8 MLRAQTNVILLNVLK-QGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSY 66 (116)
T ss_dssp HHHHHHHHHHHHHHH-HCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhchHHHHHHHHHH-hCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 344567888888886 47788899999998877777899999999999999999999986
No 155
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=41.41 E-value=8.4 Score=32.99 Aligned_cols=56 Identities=23% Similarity=0.394 Sum_probs=40.4
Q ss_pred eeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCCCCCCceeec
Q 004841 667 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYL 727 (728)
Q Consensus 667 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Yi 727 (728)
|..++...+.++..+|...+-.. ...+...+...|+.|.++|||+|..+| ..+.|+
T Consensus 15 vL~~l~~~~~~t~~ela~~l~~~----~~~s~~tv~~~l~~L~~~Glv~r~~~~-rr~~~~ 70 (123)
T 1okr_A 15 VMNIIWMKKYASANNIIEEIQMQ----KDWSPKTIRTLITRLYKKGFIDRKKDN-KIFQYY 70 (123)
T ss_dssp HHHHHHHHSSEEHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHTSEEEEEET-TEEEEE
T ss_pred HHHHHHhCCCcCHHHHHHHHhcc----CCCcHhhHHHHHHHHHHCCCeEEEecC-CeEEEE
Confidence 33444446678888888876543 235688899999999999999998764 455554
No 156
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=41.32 E-value=5.9 Score=31.41 Aligned_cols=38 Identities=11% Similarity=0.090 Sum_probs=28.3
Q ss_pred ccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCCCC
Q 004841 675 KVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSN 720 (728)
Q Consensus 675 k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d 720 (728)
...+..||.+ .|..+...|.+-|..|.++|||+|+++-
T Consensus 23 ~~psv~EIa~--------~lgvS~~TVrr~L~~Le~kG~I~R~~gg 60 (77)
T 2jt1_A 23 APVKTRDIAD--------AAGLSIYQVRLYLEQLHDVGVLEKVNAG 60 (77)
T ss_dssp SCEEHHHHHH--------HHTCCHHHHHHHHHHHHHTTSEEEESCS
T ss_pred CCcCHHHHHH--------HHCCCHHHHHHHHHHHHHCCcEEecCCC
Confidence 4555555555 2344677799999999999999998753
No 157
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=40.91 E-value=18 Score=32.65 Aligned_cols=48 Identities=10% Similarity=0.190 Sum_probs=38.9
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 563 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 563 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
++....||.++. ....|+.+|++.+|++...+-++|..|. +.+++...
T Consensus 57 ~p~R~~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~--~aGlV~~~ 104 (151)
T 3f6v_A 57 EPTRRRLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLT--EAGLVTPR 104 (151)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 456677777666 4579999999999999999999999997 45777654
No 158
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=40.40 E-value=22 Score=31.23 Aligned_cols=58 Identities=9% Similarity=0.144 Sum_probs=40.2
Q ss_pred hheeeecccc-cccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCCCCCCceee
Q 004841 664 DASIVRIMKS-RKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRY 726 (728)
Q Consensus 664 ~A~IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Y 726 (728)
+..|.+++-. ...++..+|...+.. .-..+...|...|+.|.++|||+|..++ ..+.|
T Consensus 11 e~~vL~~L~~~~~~~t~~el~~~l~~----~~~~~~~Tvt~~l~rLe~kGlv~r~~~~-r~~~~ 69 (138)
T 2g9w_A 11 ERAVMDHLWSRTEPQTVRQVHEALSA----RRDLAYTTVMAVLQRLAKKNLVLQIRDD-RAHRY 69 (138)
T ss_dssp HHHHHHHHHTCSSCEEHHHHHHHHTT----TCCCCHHHHHHHHHHHHHTTSEEEEC----CCEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhc----cCCCCHHHHHHHHHHHHHCCCEEEEecC-CeEEE
Confidence 4445555555 467888888875532 1235788899999999999999998754 46666
No 159
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=40.17 E-value=22 Score=30.26 Aligned_cols=50 Identities=20% Similarity=0.237 Sum_probs=41.5
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHh--CCCHHHHHHHHHHhhhccccccccC
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQL--NLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t--~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
+....-.||.+..+...+|..+|++.+ |++...+.++|..|. +.+++...
T Consensus 11 md~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le--~~GLV~~~ 62 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLA--DHDLLQPL 62 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHH--HTTSEEEC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHH--HCCCEEec
Confidence 455667788877766799999999999 999999999999997 46777654
No 160
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=40.00 E-value=32 Score=24.55 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=36.5
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHhhCChhhHhHHHHHHhHH
Q 004841 426 KLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLT 469 (728)
Q Consensus 426 ~La~RLL~~~s~s~~~E~~~i~~Lk~~~G~~~t~kl~~Ml~D~~ 469 (728)
-+.+|++.......+.-..|+..|+..-|......+.+|+.-+-
T Consensus 5 sViRSvikSS~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~ 48 (56)
T 1oks_A 5 SVIRSIIKSSRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKII 48 (56)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHccccchHHHHHHHHHHHH
Confidence 46788888777778888899999999999888888888887653
No 161
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=39.89 E-value=46 Score=24.90 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=29.6
Q ss_pred EcHHHHHHHHhhc---CCCCcCHHHHHHHhCCCHHHHHHHHHHh
Q 004841 562 VTTYQASALLLFN---SSDRLSYSEIMTQLNLSDDDVVRLLHSL 602 (728)
Q Consensus 562 vs~~Q~~iLllFn---~~~~~t~~ei~~~t~i~~~~l~~~L~~L 602 (728)
+|.-|-.|+.+.- +...+|+.||++.+|++...++..+..-
T Consensus 6 L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra 49 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 49 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3555555654432 2457899999999999999888776544
No 162
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=39.77 E-value=9.5 Score=30.51 Aligned_cols=52 Identities=13% Similarity=0.282 Sum_probs=39.4
Q ss_pred heeeecccccc---cCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCCCCCCce
Q 004841 665 ASIVRIMKSRK---VLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMF 724 (728)
Q Consensus 665 A~IVRimK~~k---~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y 724 (728)
-.|..+|+... .++..+|-.+ +..+...|.++|..|.+.|+|++.+..+..|
T Consensus 13 ~~IL~~L~~~~pg~~~t~~eLA~~--------Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W 67 (81)
T 1qbj_A 13 QRILKFLEELGEGKATTAHDLSGK--------LGTPKKEINRVLYSLAKKGKLQKEAGTPPLW 67 (81)
T ss_dssp HHHHHHHHHHCTTCCBCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEESSSSCEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEecCCCCCee
Confidence 33566777777 7888887763 3467789999999999999999876555443
No 163
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=39.69 E-value=17 Score=28.49 Aligned_cols=36 Identities=6% Similarity=0.238 Sum_probs=30.5
Q ss_pred HHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHHHhh
Q 004841 568 SALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLS 603 (728)
Q Consensus 568 ~iLllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 603 (728)
.||-.+.+ ...++..+|++.+|++.++|.++|..|-
T Consensus 23 kVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LK 59 (80)
T 2lnb_A 23 RILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMK 59 (80)
T ss_dssp HHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46655554 4689999999999999999999999995
No 164
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=39.40 E-value=37 Score=29.44 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=37.1
Q ss_pred EEcHHHHHHHHhh----cCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004841 561 IVTTYQASALLLF----NSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 612 (728)
Q Consensus 561 ~vs~~Q~~iLllF----n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 612 (728)
.++..|..+|..+ .....+|..+|++.+|++...+.+.|..|.. .+++.+
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~--~Gli~r 63 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEE--KGLVKK 63 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred hcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHH--CCCEEe
Confidence 4455555555433 3456899999999999999999999999973 466654
No 165
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=39.34 E-value=19 Score=31.54 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=32.6
Q ss_pred hhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 572 LFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 572 lFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
+....+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 16 l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le--~~Glv~r~ 55 (142)
T 1on2_A 16 LIEEKGYARVSDIAEALAVHPSSVTKMVQKLD--KDEYLIYE 55 (142)
T ss_dssp HHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 34445679999999999999999999999997 45677654
No 166
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=39.15 E-value=30 Score=34.30 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=43.0
Q ss_pred HHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCeEEEecCC
Q 004841 567 ASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKF 631 (728)
Q Consensus 567 ~~iLllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~~F 631 (728)
..||.+|.+ ...+|+.||++.+|++...+.+.|..|.. .+++.+. +..|.+...+
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~--~G~v~~~--------~~~Y~Lg~~~ 79 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVE--LGYVATD--------GSAFWLTPRV 79 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEES--------SSEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEec--------CCEEEEcHHH
Confidence 357778874 46899999999999999999999999974 5677653 2567776543
No 167
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=38.93 E-value=34 Score=33.65 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=42.8
Q ss_pred HHHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCeEEEecC
Q 004841 566 QASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 630 (728)
Q Consensus 566 Q~~iLllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~~ 630 (728)
...||.+|.+ ...+|+.||++.+|++...+.+.|..|. ..+++.+. +..|.+...
T Consensus 16 ~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~--~~G~v~~~--------~~~Y~Lg~~ 71 (257)
T 2g7u_A 16 GFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQ--KLGYVAGS--------GGRWSLTPR 71 (257)
T ss_dssp HHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE--------TTEEEECGG
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEeC--------CCEEEEcHH
Confidence 3457778875 4579999999999999999999999997 35677653 256777554
No 168
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=37.96 E-value=8.7 Score=35.56 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=40.8
Q ss_pred EcHHHHHHHHhhcCCC---CcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 562 VTTYQASALLLFNSSD---RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~---~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
+|..|..||..+...+ .+|..+|++.++++...+.+.|..|. +.+++.+.
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~ 119 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLL--EKGLIERR 119 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHH--HHTSEECC
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCcCEEec
Confidence 4678888888776544 39999999999999999999999997 45677654
No 169
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=37.84 E-value=17 Score=29.65 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=35.0
Q ss_pred EcHHHHHHHHhhc-CCCC---cCHHHHHHHhCCCHHHHHHHHHHhhhcccccc
Q 004841 562 VTTYQASALLLFN-SSDR---LSYSEIMTQLNLSDDDVVRLLHSLSCAKYKIL 610 (728)
Q Consensus 562 vs~~Q~~iLllFn-~~~~---~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL 610 (728)
++.-+..||+.+- ..+. +|..+|++.++++...+.+.|..|.. .+++
T Consensus 10 l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~--~Glv 60 (95)
T 2qvo_A 10 FKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEE--AKMV 60 (95)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHH--TTSE
T ss_pred CchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CcCc
Confidence 3455666666553 2233 99999999999999999999999973 4555
No 170
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=37.78 E-value=82 Score=22.16 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.3
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHH
Q 004841 577 DRLSYSEIMTQLNLSDDDVVRLLH 600 (728)
Q Consensus 577 ~~~t~~ei~~~t~i~~~~l~~~L~ 600 (728)
..+|..+|++.+|++...+.+.+.
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 357999999999999998887653
No 171
>3omy_A Protein TRAM; DNA binding protein, dimer, bacterial conjugation, ribbon-HE helix, transcriptional repressor, DNA; 1.30A {Escherichia coli} SCOP: a.55.1.0
Probab=37.25 E-value=28 Score=24.88 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHhccCchhchH
Q 004841 131 LNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYE 176 (728)
Q Consensus 131 ~~~~l~~~ll~~I~~~R~g~~id~~~l~~~i~ml~~l~~~~~~~Y~ 176 (728)
+++++.+.|-+++++.|....-| --+.++..||.+|| +.+|+
T Consensus 8 ~s~~v~~~I~~iVe~r~qeGA~d-vs~Ssv~smLleLG---LrVYe 49 (52)
T 3omy_A 8 VNNNVYEQITDLVTIRKQEGIEE-ASLSNVSSMLLELG---LRVYM 49 (52)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCTT-CCHHHHHHHHHHHH---HHHHH
T ss_pred echHHHHHHHHHHHHHHHcCccc-ccHHHHHHHHHHhh---hhhhh
Confidence 45667777788888888665522 23678889999998 45664
No 172
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=37.18 E-value=48 Score=22.32 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=25.2
Q ss_pred HHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHH
Q 004841 567 ASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHS 601 (728)
Q Consensus 567 ~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~ 601 (728)
..|+.++.+ .+|..+|++.+|++...+.+.+..
T Consensus 12 ~~i~~~~~~--g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 12 AQLDVMKLL--NVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred HHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHhh
Confidence 345555543 579999999999999988877653
No 173
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=36.91 E-value=46 Score=26.49 Aligned_cols=40 Identities=10% Similarity=0.182 Sum_probs=28.4
Q ss_pred cHHHHHHHHh-h--cCCCCcCHHHHHHHhCCCHHHHHHHHHHh
Q 004841 563 TTYQASALLL-F--NSSDRLSYSEIMTQLNLSDDDVVRLLHSL 602 (728)
Q Consensus 563 s~~Q~~iLll-F--n~~~~~t~~ei~~~t~i~~~~l~~~L~~L 602 (728)
|.-|-.|+.+ | .+...+|+.||++.+|++...++..+..-
T Consensus 20 ~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra 62 (87)
T 1tty_A 20 SPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKA 62 (87)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555555543 3 33357999999999999999888766543
No 174
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=36.83 E-value=7.9 Score=34.46 Aligned_cols=51 Identities=12% Similarity=0.304 Sum_probs=33.8
Q ss_pred hheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhccc----CCCCCCc
Q 004841 664 DASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLER----DKSNPNM 723 (728)
Q Consensus 664 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R----~~~d~~~ 723 (728)
+..|...+ ..+.++..+|-..+ ..+.+.+-+.|..|.++|||+| ++.|+..
T Consensus 40 q~~iL~~l-~~~~~t~~eLa~~l--------~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~ 94 (151)
T 3kp7_A 40 QSHVLNML-SIEALTVGQITEKQ--------GVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRL 94 (151)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHHH--------CSCSSHHHHHHHHHHHTTSEEC-----------
T ss_pred HHHHHHHH-HcCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCe
Confidence 44555566 67788888877633 3466778999999999999998 6666543
No 175
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=36.81 E-value=31 Score=25.06 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=27.0
Q ss_pred HHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhh
Q 004841 567 ASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 603 (728)
Q Consensus 567 ~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 603 (728)
..|+.++- ..+|..||++.+|++...+..++....
T Consensus 4 ~~vl~l~~--~g~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 4 RQVLKLID--EGYTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp HHHHHHHH--TSCCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34444443 367999999999999999998887764
No 176
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=36.41 E-value=41 Score=27.93 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=36.1
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHh-CCCHHHHHHHHHHhhhccccccccC
Q 004841 565 YQASALLLFNSSDRLSYSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 565 ~Q~~iLllFn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
+...||.... .+..++.||++.+ |++...+.+.|..|. +.+++.+.
T Consensus 15 ~~~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le--~~GlI~r~ 61 (107)
T 2hzt_A 15 WKXVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELE--ADGVINRI 61 (107)
T ss_dssp THHHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred cHHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 3445565444 4679999999999 999999999999997 45777764
No 177
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=36.15 E-value=44 Score=31.30 Aligned_cols=48 Identities=10% Similarity=0.211 Sum_probs=39.1
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 563 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 563 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
+..+..||.+..+ +.+|..+|++.+|++...+.+.|..|. +.+++...
T Consensus 19 d~~~~~IL~~L~~-~~~s~~eLA~~lglS~stv~~~l~~Le--~~GlI~~~ 66 (192)
T 1uly_A 19 EDTRRKILKLLRN-KEMTISQLSEILGKTPQTIYHHIEKLK--EAGLVEVK 66 (192)
T ss_dssp SHHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 4566677766664 689999999999999999999999997 45777654
No 178
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=36.13 E-value=23 Score=28.55 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=31.7
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhh
Q 004841 562 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 603 (728)
Q Consensus 562 vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 603 (728)
+|.-|..|+.++ ...+|..||++.+|++...++..+....
T Consensus 30 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 30 LTEREMEILLLI--AKGYSNQEIASASHITIKTVKTHVSNIL 69 (91)
T ss_dssp CCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455666777666 3578999999999999999998887664
No 179
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=36.01 E-value=12 Score=30.32 Aligned_cols=54 Identities=6% Similarity=0.073 Sum_probs=39.5
Q ss_pred hhheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCCCCCCce
Q 004841 663 IDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMF 724 (728)
Q Consensus 663 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y 724 (728)
.+..|.+.+.....++..+|... +..+...+-+.+..|.+.|+|++..+.+..+
T Consensus 25 ~~~~il~~l~~~~~~s~~ela~~--------l~is~~tvs~~l~~L~~~glv~~~~~~r~~~ 78 (99)
T 3cuo_A 25 KRLLILCMLSGSPGTSAGELTRI--------TGLSASATSQHLARMRDEGLIDSQRDAQRIL 78 (99)
T ss_dssp HHHHHHHHHTTCCSEEHHHHHHH--------HCCCHHHHHHHHHHHHHTTSEEEEECSSCEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEEecCCEEE
Confidence 34456666666667888777663 3457888999999999999999986544433
No 180
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=35.91 E-value=16 Score=31.55 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=28.9
Q ss_pred ccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccC--CCCCC
Q 004841 675 KVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD--KSNPN 722 (728)
Q Consensus 675 k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~--~~d~~ 722 (728)
..++..+|-. .+..+.+.+-+.|..|.++|||+|. +.|+.
T Consensus 52 ~~~t~~eLa~--------~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R 93 (127)
T 2frh_A 52 KEYYLKDIIN--------HLNYKQPQVVKAVKILSQEDYFDKKRNEHDER 93 (127)
T ss_dssp SEEEHHHHHH--------HSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSC
T ss_pred CCcCHHHHHH--------HHCCCHHHHHHHHHHHHHCCCEEecCCCCCCC
Confidence 4555555544 3456788899999999999999994 44543
No 181
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=35.82 E-value=22 Score=30.03 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=36.8
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHh-CCCHHHHHHHHHHhhhccccccccC
Q 004841 564 TYQASALLLFNSSDRLSYSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 564 ~~Q~~iLllFn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
.+...||....+ +.+++.+|++.+ |++...+.+.|..|. +.+++.+.
T Consensus 22 ~~~~~IL~~L~~-~~~~~~eLa~~l~~is~~tvs~~L~~Le--~~GlI~r~ 69 (112)
T 1z7u_A 22 KWKLSLMDELFQ-GTKRNGELMRALDGITQRVLTDRLREME--KDGLVHRE 69 (112)
T ss_dssp TTHHHHHHHHHH-SCBCHHHHHHHSTTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred ccHHHHHHHHHh-CCCCHHHHHHHhccCCHHHHHHHHHHHH--HCCCEEEe
Confidence 345556654443 578999999999 999999999999997 45777654
No 182
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=34.83 E-value=1.1e+02 Score=23.79 Aligned_cols=59 Identities=7% Similarity=0.182 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhhhhccccCh-HHHHHHHHHHHHHHhcCCCCC
Q 004841 375 AELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDK-DLFAEFYRKKLARRLLFDKSA 437 (728)
Q Consensus 375 ~e~La~y~d~~lk~~~~~~~~~~~~~~~l~~i~~lf~~l~~K-D~F~~~Y~~~La~RLL~~~s~ 437 (728)
-+++..+++.++.++ .+++++...++.+-..+..+... +.|...|-..+.+-|..+.++
T Consensus 7 C~~iv~~ve~~l~~~----~t~~~I~~~l~~~C~~lp~~~~~C~~~V~~y~~~iI~~l~~~~~P 66 (78)
T 1nkl_A 7 CRKIIQKLEDMVGPQ----PNEDTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWDILTGKKP 66 (78)
T ss_dssp HHHHHHHHHHHHCSS----CCHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHcC----CcHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 467889999999853 47899999999999888875554 789999999999998876553
No 183
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=33.78 E-value=51 Score=27.27 Aligned_cols=39 Identities=15% Similarity=0.339 Sum_probs=27.2
Q ss_pred EcHHHHHHH-Hhh--cCCCCcCHHHHHHHhCCCHHHHHHHHH
Q 004841 562 VTTYQASAL-LLF--NSSDRLSYSEIMTQLNLSDDDVVRLLH 600 (728)
Q Consensus 562 vs~~Q~~iL-llF--n~~~~~t~~ei~~~t~i~~~~l~~~L~ 600 (728)
+|.-|-.|+ +.| ++.+.+|++||++.+|++...++..+.
T Consensus 20 Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344444444 444 234689999999999999988876544
No 184
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=33.69 E-value=35 Score=31.97 Aligned_cols=40 Identities=10% Similarity=0.001 Sum_probs=36.1
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhh
Q 004841 565 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSC 604 (728)
Q Consensus 565 ~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~ 604 (728)
-|-.|+.+.+++..+|.+||++.++++...+++-|.-|.-
T Consensus 13 R~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~ 52 (190)
T 4a0z_A 13 RREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNI 52 (190)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcC
Confidence 4677888999999999999999999999999999998863
No 185
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=32.01 E-value=62 Score=24.56 Aligned_cols=40 Identities=8% Similarity=0.122 Sum_probs=27.8
Q ss_pred cHHHHHHHHh-h--cCCCCcCHHHHHHHhCCCHHHHHHHHHHh
Q 004841 563 TTYQASALLL-F--NSSDRLSYSEIMTQLNLSDDDVVRLLHSL 602 (728)
Q Consensus 563 s~~Q~~iLll-F--n~~~~~t~~ei~~~t~i~~~~l~~~L~~L 602 (728)
|.-|-.|+.+ | .+...+|+.||++.+|++...+...+..-
T Consensus 12 ~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra 54 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKA 54 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4445555533 3 23357899999999999999888765543
No 186
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=31.92 E-value=36 Score=33.62 Aligned_cols=37 Identities=14% Similarity=0.327 Sum_probs=29.3
Q ss_pred HHHHHHh-hcCCCCcCHHHHHHHhCCCHHHHHHHHHHh
Q 004841 566 QASALLL-FNSSDRLSYSEIMTQLNLSDDDVVRLLHSL 602 (728)
Q Consensus 566 Q~~iLll-Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L 602 (728)
...|+-. .+....+|+++|++.|||..+++..+|+.|
T Consensus 195 ~~~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~~l 232 (276)
T 3to7_A 195 SDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTL 232 (276)
T ss_dssp HHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHHHC
Confidence 3344433 334568999999999999999999999988
No 187
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=31.24 E-value=48 Score=27.32 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=33.1
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhh
Q 004841 561 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 603 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 603 (728)
.+|.-|..||.++- ..+|..||++.+|++...++..+..+.
T Consensus 34 ~Lt~re~~Vl~l~~--~G~s~~EIA~~L~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 34 RLSPKESEVLRLFA--EGFLVTEIAKKLNRSIKTISSQKKSAM 74 (99)
T ss_dssp SCCHHHHHHHHHHH--HTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35677777777664 478999999999999999998887764
No 188
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=30.66 E-value=47 Score=27.86 Aligned_cols=47 Identities=11% Similarity=0.297 Sum_probs=36.1
Q ss_pred HHHHHHHHhhcCCCCcC--HHHHHHHh-CCCHHHHHHHHHHhhhccccccccC
Q 004841 564 TYQASALLLFNSSDRLS--YSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 564 ~~Q~~iLllFn~~~~~t--~~ei~~~t-~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
.....||....+ +..+ +.||++.+ |++...+.++|..|. +.+++.+.
T Consensus 27 ~wrl~IL~~L~~-g~~~~~~~eL~~~l~gis~~~ls~~L~~Le--~~GlV~r~ 76 (111)
T 3df8_A 27 KYTMLIISVLGN-GSTRQNFNDIRSSIPGISSTILSRRIKDLI--DSGLVERR 76 (111)
T ss_dssp TTHHHHHHHHTS-SSSCBCHHHHHHTSTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred ccHHHHHHHHhc-CCCCCCHHHHHHHccCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 345556665553 4545 99999999 999999999999997 46787764
No 189
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=30.65 E-value=17 Score=26.44 Aligned_cols=45 Identities=11% Similarity=0.358 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHhcCCcCCHH-HHHHHHHHHHHhccCchhchHHH
Q 004841 131 LNGKVRDAVITLIDQEREGEQIDRA-LLKNVLDIFVEIGMGQMDYYEND 178 (728)
Q Consensus 131 ~~~~l~~~ll~~I~~~R~g~~id~~-~l~~~i~ml~~l~~~~~~~Y~~~ 178 (728)
+++++.+.|-+++++.|....-+.+ -+.++..||.+|| +-+|+-.
T Consensus 7 vs~~v~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleLG---LrVYe~q 52 (55)
T 1dp3_A 7 VSDEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELG---LRVYEAQ 52 (55)
T ss_dssp CCCTHHHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHT---TSHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHh---HHHHHHh
Confidence 3455667777788888855442222 3678899999998 4567543
No 190
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=30.54 E-value=33 Score=33.34 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=34.9
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 566 QASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 566 Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
-+.|+.+.. +++.|.++|++.+|++...+..+|..|. +.+++.+.
T Consensus 167 ~~~l~~~l~-~~~~t~~~la~~~~l~~~~V~~~l~~L~--~~~~v~~~ 211 (232)
T 2qlz_A 167 LAILHYLLL-NGRATVEELSDRLNLKEREVREKISEMA--RFVPVKII 211 (232)
T ss_dssp HHHHHHHHH-SSEEEHHHHHHHHTCCHHHHHHHHHHHT--TTSCEEEE
T ss_pred HHHHHHHHh-cCCCCHHHHHHHhCcCHHHHHHHHHHHH--hcCCeEEe
Confidence 344444444 3688999999999999999999999996 56777543
No 191
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=30.34 E-value=56 Score=28.52 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=36.8
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHh-CCCHHHHHHHHHHhhhccccccccC
Q 004841 565 YQASALLLFNSSDRLSYSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 565 ~Q~~iLllFn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
+.+.||.... .+..++.||++.+ |++...|.+.|..|. +.+++.+.
T Consensus 27 W~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le--~~GLV~R~ 73 (131)
T 4a5n_A 27 WKGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELE--ADGIVHRE 73 (131)
T ss_dssp SHHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHH--HCCCEEEE
Confidence 3455665554 4689999999999 999999999999997 46788765
No 192
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=30.22 E-value=19 Score=32.77 Aligned_cols=47 Identities=19% Similarity=0.305 Sum_probs=39.9
Q ss_pred hhheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccC
Q 004841 663 IDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD 717 (728)
Q Consensus 663 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~ 717 (728)
+|..|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|+|-
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~l--------g~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKV--------GLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeeec
Confidence 466788899999999998887743 56889999999999999999974
No 193
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=30.11 E-value=56 Score=28.94 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=36.2
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 565 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 565 ~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
+...||.... .+..++.||++.+|++...+.+.|..|. +.+++.+.+
T Consensus 25 w~l~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le--~~GlI~r~~ 71 (146)
T 2f2e_A 25 WSMLIVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLV--EHGVMVAVP 71 (146)
T ss_dssp SHHHHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred hHHHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEEEe
Confidence 3444554333 3578999999999999999999999997 467887654
No 194
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=29.62 E-value=85 Score=30.06 Aligned_cols=84 Identities=20% Similarity=0.140 Sum_probs=58.6
Q ss_pred ccCcHhHHHHHHHHHHHHHhcCCCceEEeccCCceEEEEeEEcCeeEEEE-----EcHHHHHHHHhhcCCCCcCHHHHHH
Q 004841 512 LNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELI-----VTTYQASALLLFNSSDRLSYSEIMT 586 (728)
Q Consensus 512 ~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~lg~~~i~~~~~~~~~~l~-----vs~~Q~~iLllFn~~~~~t~~ei~~ 586 (728)
..=|..+..+.+.++. ||.+---.+|++|.+.++ .+..|..|+-+..+...+|..+++.
T Consensus 113 lVSp~Dl~~A~~~l~~----------------Lg~~~~l~~~~sg~~vvqs~~~~~~~~~~~il~~~~~~g~vt~~~la~ 176 (218)
T 3cuq_B 113 LLSPEDLVNACKMLEA----------------LKLPLRLRVFDSGVMVIELQSHKEEEMVASALETVSEKGSLTSEEFAK 176 (218)
T ss_dssp CCCHHHHHHHHHTTTT----------------TTCSEEEEECTTSBEEEEETTCCGGGGHHHHHHHHHHTSCBCHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----------------cCCCEEEEEECCCcEEEEcCCCchHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 3457788877765443 333311223444444443 2358888987777788999999999
Q ss_pred HhCCCHHHHHHHHHHhhhccccccccC
Q 004841 587 QLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 587 ~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
.+|.+....+..|..+. +-+++...
T Consensus 177 ~l~ws~~~a~e~L~~~e--~~G~l~~D 201 (218)
T 3cuq_B 177 LVGMSVLLAKERLLLAE--KMGHLCRD 201 (218)
T ss_dssp HHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HhCCCHHHHHHHHHHHH--HcCCEEEE
Confidence 99999999999998876 45777765
No 195
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=29.21 E-value=46 Score=27.62 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=34.7
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHh-CCCHHHHHHHHHHhhhccccccccC
Q 004841 566 QASALLLFNSSDRLSYSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 566 Q~~iLllFn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
-..||.... .+..++.||++.+ |++...+.++|..|. +.+++.+.
T Consensus 27 ~~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le--~~GlV~r~ 72 (107)
T 2fsw_A 27 TLLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLC--GKGLIKKK 72 (107)
T ss_dssp HHHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHH--HCCCEEEe
Confidence 334554444 4679999999999 599999999999997 45777654
No 196
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=29.19 E-value=1e+02 Score=23.89 Aligned_cols=57 Identities=9% Similarity=0.148 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhhhhcc-ccCh-HHHHHHHHHHHHHHhcCCCC
Q 004841 375 AELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAY-ISDK-DLFAEFYRKKLARRLLFDKS 436 (728)
Q Consensus 375 ~e~La~y~d~~lk~~~~~~~~~~~~~~~l~~i~~lf~~-l~~K-D~F~~~Y~~~La~RLL~~~s 436 (728)
-+++...++.++ ++ .+++++...|+.+...+.. +.+. +.|...|-..+..-|+...+
T Consensus 7 C~~~v~~le~~l-~n----~Te~~I~~~L~~vC~~l~~~~~~~C~~~V~~y~~~Ii~~L~~~~~ 65 (74)
T 1l9l_A 7 CLTIVQKLKKMV-DK----PTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVAGET 65 (74)
T ss_dssp HHHHHHHHHHHC-SS----CCHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHh-cc----cCHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 467778888888 53 3789999999999888876 6655 88999999999999988754
No 197
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=28.93 E-value=26 Score=31.10 Aligned_cols=52 Identities=6% Similarity=0.062 Sum_probs=35.2
Q ss_pred hheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccC--CCCCCc
Q 004841 664 DASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD--KSNPNM 723 (728)
Q Consensus 664 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~--~~d~~~ 723 (728)
+..|...+.....++..+|.. .+..+...+-+.|..|.++|||+|. +.|+..
T Consensus 46 ~~~iL~~l~~~~~~t~~ela~--------~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~ 99 (154)
T 2eth_A 46 ELYAFLYVALFGPKKMKEIAE--------FLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRT 99 (154)
T ss_dssp HHHHHHHHHHHCCBCHHHHHH--------HTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSC
T ss_pred HHHHHHHHHHcCCCCHHHHHH--------HHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcce
Confidence 334444444455666666655 3456788899999999999999985 444433
No 198
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=28.89 E-value=54 Score=28.49 Aligned_cols=48 Identities=15% Similarity=0.308 Sum_probs=37.1
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHh-CCCHHHHHHHHHHhhhccccccccC
Q 004841 563 TTYQASALLLFNSSDRLSYSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 563 s~~Q~~iLllFn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
+.+...||.... .+.+++.||++.+ |++...+.++|..|. +.+++.+.
T Consensus 34 ~~w~l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le--~~GlV~r~ 82 (131)
T 1yyv_A 34 SRWGVLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALE--QDGFLNRV 82 (131)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHH--HHTCEEEE
T ss_pred CCcHHHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHH--HCCcEEEE
Confidence 344555665544 4679999999999 799999999999997 45777754
No 199
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=28.70 E-value=69 Score=25.60 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=28.2
Q ss_pred EcHHHHHHHHh-hcCCCCcCHHHHHHHhCCCHHHHHHHHHHh
Q 004841 562 VTTYQASALLL-FNSSDRLSYSEIMTQLNLSDDDVVRLLHSL 602 (728)
Q Consensus 562 vs~~Q~~iLll-Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L 602 (728)
++.-|-.|+.+ |- ..+|+.||++.+|++...++..+..-
T Consensus 38 L~~~~r~vl~l~~~--~g~s~~eIA~~lgis~~tV~~~l~ra 77 (92)
T 3hug_A 38 LSAEHRAVIQRSYY--RGWSTAQIATDLGIAEGTVKSRLHYA 77 (92)
T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555555554 43 36799999999999999888766543
No 200
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=28.45 E-value=35 Score=27.79 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=26.0
Q ss_pred ccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhccc
Q 004841 675 KVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLER 716 (728)
Q Consensus 675 k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R 716 (728)
+.+...+|-. +...+...+..+|..|.++|||+|
T Consensus 35 ~gi~qkeLa~--------~~~l~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 35 KGIWSRDVRY--------KSNLPLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp TCEEHHHHHH--------HTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHH--------HHCCCHHHHHHHHHHHHHCCCEEE
Confidence 3555555554 455678889999999999999994
No 201
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=28.35 E-value=27 Score=30.92 Aligned_cols=49 Identities=6% Similarity=0.104 Sum_probs=36.8
Q ss_pred hhhheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCC
Q 004841 662 AIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 718 (728)
Q Consensus 662 ~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 718 (728)
.-+..|...+.....++..+|-. .+..+...+-+.|..|.++|||+|..
T Consensus 43 ~~~~~iL~~l~~~~~~t~~ela~--------~l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 43 VPEWRVLACLVDNDAMMITRLAK--------LSLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp HHHHHHHHHHSSCSCBCHHHHHH--------HTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHHCCCcCHHHHHH--------HHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 33455666666667777777765 24567888999999999999999964
No 202
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=28.29 E-value=77 Score=23.41 Aligned_cols=39 Identities=26% Similarity=0.163 Sum_probs=28.3
Q ss_pred EcHHHHHHHHh-hcCCCCcCHHHHHHHhCCCHHHHHHHHHHh
Q 004841 562 VTTYQASALLL-FNSSDRLSYSEIMTQLNLSDDDVVRLLHSL 602 (728)
Q Consensus 562 vs~~Q~~iLll-Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L 602 (728)
+|.-+-.|+.+ |- ..+|..||++.+|++...+...+...
T Consensus 16 L~~~~r~il~l~~~--~g~s~~eIA~~lgis~~tv~~~~~ra 55 (70)
T 2o8x_A 16 LTTDQREALLLTQL--LGLSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555556644 43 35899999999999999888766544
No 203
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=26.64 E-value=22 Score=31.13 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=30.9
Q ss_pred eeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCC
Q 004841 667 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 718 (728)
Q Consensus 667 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 718 (728)
|...+.... ++..+|-..+ ..+.+.+-+.|..|.++|||+|.+
T Consensus 43 iL~~l~~~~-~t~~eLa~~l--------~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 43 ILMLLSEES-LTNSELARRL--------NVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHTTCC-CCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHhCC-CCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCeEecc
Confidence 333444555 8877777643 457888999999999999999865
No 204
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=26.44 E-value=45 Score=33.01 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=22.4
Q ss_pred CCCCcCHHHHHHHhCCCHHHHHHHHHHh
Q 004841 575 SSDRLSYSEIMTQLNLSDDDVVRLLHSL 602 (728)
Q Consensus 575 ~~~~~t~~ei~~~t~i~~~~l~~~L~~L 602 (728)
..+.+|+++|++.|||..+++..+|+.|
T Consensus 211 ~~~~isi~~is~~T~i~~~DIi~tL~~l 238 (284)
T 2ozu_A 211 NDKQISIKKLSKLTGICPQDITSTLHHL 238 (284)
T ss_dssp -----CHHHHHHHHCBCHHHHHHHHHHT
T ss_pred CCCcEeHHHHHHHhCCCHHHHHHHHHHC
Confidence 3458999999999999999999999988
No 205
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=26.31 E-value=21 Score=29.21 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=36.2
Q ss_pred hhheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCC
Q 004841 663 IDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 718 (728)
Q Consensus 663 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 718 (728)
.+..|...+...+.++..+|...+ ..+...+-+.|..|.++|||+|..
T Consensus 21 ~~~~il~~l~~~~~~s~~ela~~l--------~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 21 SDVRIYSLLLERGGMRVSEIAREL--------DLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 345555566556678877776633 467889999999999999999965
No 206
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=26.15 E-value=12 Score=30.53 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=33.3
Q ss_pred cccc-cCChhHHHHHHHHHhcCCCCCChhH-HHHHHHhhhhhhhcccCCCCCCce
Q 004841 672 KSRK-VLGHQQLVLECVEQLGRMFKPDFKA-IKKRIEDLITRDYLERDKSNPNMF 724 (728)
Q Consensus 672 K~~k-~l~~~~L~~~v~~~l~~~F~~~~~~-ik~~Ie~LIereyi~R~~~d~~~y 724 (728)
.... .++..+|-.. +..+... +-+.|..|.++|||++++.|+...
T Consensus 25 ~~~~~~~t~~eLa~~--------l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~ 71 (95)
T 2pg4_A 25 EKKGYEPSLAEIVKA--------SGVSEKTFFMGLKDRLIRAGLVKEETLSYRVK 71 (95)
T ss_dssp HHTTCCCCHHHHHHH--------HCCCHHHHHTTHHHHHHHTTSEEEEEEETTEE
T ss_pred HhcCCCCCHHHHHHH--------HCCCchHHHHHHHHHHHHCCCeecCCCCCCeE
Confidence 3344 6777777663 3457788 999999999999999887776543
No 207
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=26.02 E-value=19 Score=31.49 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=35.8
Q ss_pred hhheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCC
Q 004841 663 IDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 718 (728)
Q Consensus 663 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 718 (728)
-+..|...+...+.++..+|-.. +..+.+.+-+.|..|.++|||+|.+
T Consensus 37 ~q~~vL~~l~~~~~~t~~eLa~~--------l~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 37 TGYIVLMAIENDEKLNIKKLGER--------VFLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp HHHHHHHHSCTTCEEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHcCCcCHHHHHHH--------HCCChhhHHHHHHHHHHCCCeEecC
Confidence 34445555656677777777663 3457888999999999999999864
No 208
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=26.01 E-value=45 Score=31.54 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=39.0
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 563 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 563 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
++.+..||.+.. .++.|+.+|++.+|++...+.++|..|. +.+++...
T Consensus 14 ~~~rl~IL~~L~-~~~~s~~eLa~~l~is~stvs~hLk~Le--~~GLV~~~ 61 (202)
T 2p4w_A 14 NETRRRILFLLT-KRPYFVSELSRELGVGQKAVLEHLRILE--EAGLIESR 61 (202)
T ss_dssp SHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEEE
Confidence 456677776665 4579999999999999999999999997 45777654
No 209
>3on0_A Protein TRAM; DNA binding protein, DNA protein-DNA complex, tetramer, COOP binding, unwinding of DNA, kinking of DNA; 2.87A {Escherichia coli}
Probab=25.96 E-value=1.1e+02 Score=26.15 Aligned_cols=38 Identities=24% Similarity=0.484 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHhcc
Q 004841 131 LNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGM 169 (728)
Q Consensus 131 ~~~~l~~~ll~~I~~~R~g~~id~~~l~~~i~ml~~l~~ 169 (728)
+++++.+.|-++++..|.... .---+.++..||.+||.
T Consensus 8 vs~~v~~~I~~iVe~r~qeGA-~dvs~SSv~smLlELGL 45 (127)
T 3on0_A 8 VNNNVYEQITDLVTIRKQEGI-EEASLSNVSSMLLELGL 45 (127)
T ss_dssp CCHHHHHHHHHHHHHHHTTTC-TTCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCc-ccccHHHHHHHHHHHhH
Confidence 456777888888888887766 22247888999999984
No 210
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=25.86 E-value=30 Score=30.53 Aligned_cols=45 Identities=9% Similarity=0.127 Sum_probs=33.0
Q ss_pred hheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhccc
Q 004841 664 DASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLER 716 (728)
Q Consensus 664 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R 716 (728)
+..|...+...+.++..+|-..+ ..+.+.+-..|..|.++|||+|
T Consensus 43 ~~~iL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 43 QLAMINVIYSTPGISVADLTKRL--------IITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEe
Confidence 34445555555667777766633 3577889999999999999999
No 211
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=25.73 E-value=34 Score=29.41 Aligned_cols=49 Identities=6% Similarity=0.158 Sum_probs=32.5
Q ss_pred eeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccC--CCCCCc
Q 004841 667 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD--KSNPNM 723 (728)
Q Consensus 667 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~--~~d~~~ 723 (728)
|...+...+.++..+|-. .+..+.+.+-+.|..|.++|||+|. +.|+..
T Consensus 38 iL~~l~~~~~~~~~ela~--------~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~ 88 (139)
T 3bja_A 38 VIQVLAKSGKVSMSKLIE--------NMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRE 88 (139)
T ss_dssp HHHHHHHSCSEEHHHHHH--------HCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTC
T ss_pred HHHHHHHcCCcCHHHHHH--------HHCCChhHHHHHHHHHHHCCCeeeccCCCCCce
Confidence 333444455566666654 2445677789999999999999984 445443
No 212
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=25.63 E-value=38 Score=30.21 Aligned_cols=57 Identities=7% Similarity=0.027 Sum_probs=47.7
Q ss_pred hhhhheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCC
Q 004841 661 YAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 718 (728)
Q Consensus 661 ~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 718 (728)
..++.+|..++. .+.+.-.+|..++.+.....+.++...+-..+..|.++|||+|..
T Consensus 40 g~~~~~IL~~L~-~~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~ 96 (145)
T 1xma_A 40 GYVDTIILSLLI-EGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYY 96 (145)
T ss_dssp GTHHHHHHHHHH-HCCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcHHHHHHHHHH-hCCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEE
Confidence 456777777775 467888999999888777667899999999999999999999863
No 213
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=25.20 E-value=29 Score=30.20 Aligned_cols=47 Identities=9% Similarity=0.128 Sum_probs=34.7
Q ss_pred hheeeecc-cccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCC
Q 004841 664 DASIVRIM-KSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 718 (728)
Q Consensus 664 ~A~IVRim-K~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 718 (728)
+..|...+ .....++..+|... +..+.+.+-+.|..|.++|||+|.+
T Consensus 39 ~~~iL~~l~~~~~~~t~~~la~~--------l~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 39 RWLVLLHLARHRDSPTQRELAQS--------VGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp HHHHHHHHHHCSSCCBHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH--------hCCChhhHHHHHHHHHHCCCeeecC
Confidence 34444555 55667787777663 2457888999999999999999964
No 214
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=25.04 E-value=59 Score=32.22 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=24.5
Q ss_pred CcCHHHHHHHhCCCHHHHHHHHHHhh
Q 004841 578 RLSYSEIMTQLNLSDDDVVRLLHSLS 603 (728)
Q Consensus 578 ~~t~~ei~~~t~i~~~~l~~~L~~L~ 603 (728)
.+|+++|++.|||..+++..+|+.|-
T Consensus 212 ~isi~~is~~T~i~~~Dii~tL~~l~ 237 (280)
T 2ou2_A 212 QITINEISEITSIKKEDVISTLQYLN 237 (280)
T ss_dssp CCBHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred ceeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 79999999999999999999999883
No 215
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=23.95 E-value=51 Score=28.54 Aligned_cols=46 Identities=15% Similarity=0.090 Sum_probs=33.2
Q ss_pred hheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCC
Q 004841 664 DASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 718 (728)
Q Consensus 664 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 718 (728)
+..|...+. .+.++..+|-. .+..+.+.+-+.|..|.++|||+|..
T Consensus 39 ~~~iL~~l~-~~~~~~~ela~--------~l~~s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 39 DFLVLRATS-DGPKTMAYLAN--------RYFVTQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp HHHHHHHHT-TSCBCHHHHHH--------HTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHh-cCCcCHHHHHH--------HhCCCchhHHHHHHHHHHCCCEEeec
Confidence 333444444 66677766655 24567888999999999999999853
No 216
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=23.89 E-value=50 Score=27.40 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=36.3
Q ss_pred eeecccccccCChhHHHHHHHHHhcCCC-CCChhHHHHHHHhhhhhhhcccCC--CCCCceee
Q 004841 667 IVRIMKSRKVLGHQQLVLECVEQLGRMF-KPDFKAIKKRIEDLITRDYLERDK--SNPNMFRY 726 (728)
Q Consensus 667 IVRimK~~k~l~~~~L~~~v~~~l~~~F-~~~~~~ik~~Ie~LIereyi~R~~--~d~~~y~Y 726 (728)
|.+.+. .+.++..+|... . ..+...+-+.+..|.++|+|+|.. .|+....|
T Consensus 19 IL~~L~-~~~~~~~eLa~~--------l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y 72 (107)
T 2hzt_A 19 ILXHLT-HGKKRTSELKRL--------MPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEY 72 (107)
T ss_dssp HHHHHT-TCCBCHHHHHHH--------CTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHH-hCCCCHHHHHHH--------hcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEE
Confidence 444444 567888887763 3 568889999999999999999864 44444433
No 217
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=23.65 E-value=46 Score=32.96 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=24.6
Q ss_pred HHHHHhhc-CCCCcCHHHHHHHhCCCHHHHHHHHHHh
Q 004841 567 ASALLLFN-SSDRLSYSEIMTQLNLSDDDVVRLLHSL 602 (728)
Q Consensus 567 ~~iLllFn-~~~~~t~~ei~~~t~i~~~~l~~~L~~L 602 (728)
..|+-.+. ..+.+|+++|++.|||..+++..+|+.|
T Consensus 196 ~~il~~L~~~~~~isi~~is~~T~i~~~Dii~tL~~l 232 (278)
T 2pq8_A 196 WVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSL 232 (278)
T ss_dssp HHHHHHTC-------CHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCccHHHHHHHhCCCHHHHHHHHHHC
Confidence 34443333 3358999999999999999999999988
No 218
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=23.56 E-value=38 Score=29.21 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=32.6
Q ss_pred heeeecccccc--cCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCC
Q 004841 665 ASIVRIMKSRK--VLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 718 (728)
Q Consensus 665 A~IVRimK~~k--~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 718 (728)
..|...+.... .++..+|... +..+...+-+.|..|.++|||+|.+
T Consensus 37 ~~iL~~l~~~~~~~~~~~ela~~--------l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 37 MTIIDYLSRNKNKEVLQRDLESE--------FSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHHHTTTSCCBHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHH--------HCCCcchHHHHHHHHHHCCCEEeeC
Confidence 33444444444 6777777653 3457888999999999999999853
No 219
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=23.52 E-value=32 Score=29.98 Aligned_cols=42 Identities=14% Similarity=0.141 Sum_probs=31.8
Q ss_pred cccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccC--CCCCCc
Q 004841 674 RKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD--KSNPNM 723 (728)
Q Consensus 674 ~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~--~~d~~~ 723 (728)
.+.++..+|...+ ..+.+.+-+.+..|.++|||+|. ++|+..
T Consensus 39 ~~~~t~~ela~~l--------~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~ 82 (152)
T 1ku9_A 39 DKPLTISDIMEEL--------KISKGNVSMSLKKLEELGFVRKVWIKGERKN 82 (152)
T ss_dssp SSCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEECCTTCSSC
T ss_pred CCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEecCCCceE
Confidence 4668877777633 45778899999999999999997 445444
No 220
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=23.28 E-value=37 Score=29.29 Aligned_cols=51 Identities=6% Similarity=0.140 Sum_probs=33.1
Q ss_pred hheeeecccccc--cCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccC--CCCCC
Q 004841 664 DASIVRIMKSRK--VLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD--KSNPN 722 (728)
Q Consensus 664 ~A~IVRimK~~k--~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~--~~d~~ 722 (728)
+..|...+-..+ .++..+|-.. +..+.+.+-+.|..|.++|||+|. +.|+.
T Consensus 33 ~~~vL~~l~~~~~~~~t~~ela~~--------l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R 87 (139)
T 3eco_A 33 QGHTLGYLYAHQQDGLTQNDIAKA--------LQRTGPTVSNLLRNLERKKLIYRYVDAQDTR 87 (139)
T ss_dssp HHHHHHHHHHSTTTCEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEECCC--C
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHH--------hCCCcccHHHHHHHHHHCCCEeecCCCCCCC
Confidence 333444444443 6666666552 345788899999999999999985 44443
No 221
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=23.22 E-value=41 Score=27.64 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=33.4
Q ss_pred hhcCCCCc-CHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 572 LFNSSDRL-SYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 572 lFn~~~~~-t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
.+...+.+ |..+|++.+|++...+.++|..|. ..+++...+
T Consensus 28 ~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~--~~Gli~~~~ 69 (102)
T 1v4r_A 28 ELAPGDTLPSVADIRAQFGVAAKTVSRALAVLK--SEGLVSSRG 69 (102)
T ss_dssp SCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTT--TSSCCEEET
T ss_pred CCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeC
Confidence 45556677 999999999999999999999996 456776554
No 222
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.20 E-value=79 Score=27.52 Aligned_cols=63 Identities=17% Similarity=0.251 Sum_probs=46.1
Q ss_pred EEcHHHHHHHHhhcCC--CCcCHHHHHHHh-----CCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCeEEEe
Q 004841 561 IVTTYQASALLLFNSS--DRLSYSEIMTQL-----NLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFN 628 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~~--~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N 628 (728)
.+|.....||..+.+. ..+|.+||.+.+ +++...+-|+|..|. ..+++.+...+ .....|.++
T Consensus 15 r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~--e~Glv~~~~~~---~~~~~Y~~~ 84 (136)
T 1mzb_A 15 KVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFE--AAGLVVRHNFD---GGHAVFELA 84 (136)
T ss_dssp CCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH--HHTSEEEECSS---SSSCEEEES
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHH--HCCcEEEEEeC---CCceEEEeC
Confidence 4667777888777543 589999999998 899999999999997 45777764321 112457664
No 223
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.12 E-value=74 Score=28.11 Aligned_cols=64 Identities=16% Similarity=0.215 Sum_probs=47.0
Q ss_pred EEcHHHHHHHHhhcC-CCCcCHHHHHHHh-----CCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCeEEEec
Q 004841 561 IVTTYQASALLLFNS-SDRLSYSEIMTQL-----NLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNS 629 (728)
Q Consensus 561 ~vs~~Q~~iLllFn~-~~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~ 629 (728)
.+|.....||..+.+ ...+|.+||.+.+ +++...+-++|..|. ..+++.+...+. ....|.++.
T Consensus 19 r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~--e~Glv~~~~~~~---~~~~Y~~~~ 88 (145)
T 2fe3_A 19 RITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFR--ESGLVKELTYGD---ASSRFDFVT 88 (145)
T ss_dssp CCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHH--HTTSEEEECCTT---SCCEEEECC
T ss_pred CCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHH--HCCCEEEEeeCC---CceEEECCC
Confidence 467777788877653 4589999999998 899999999999997 457777653211 134576653
No 224
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=23.05 E-value=26 Score=28.40 Aligned_cols=29 Identities=3% Similarity=-0.062 Sum_probs=23.2
Q ss_pred CCCCChhHHHHHHHhhhhhhhcccCCCCCC
Q 004841 693 MFKPDFKAIKKRIEDLITRDYLERDKSNPN 722 (728)
Q Consensus 693 ~F~~~~~~ik~~Ie~LIereyi~R~~~d~~ 722 (728)
.+..+.+.+-+.|..|.++||| +++.|+.
T Consensus 39 ~l~i~~~tvs~~l~~Le~~Glv-~~~~d~R 67 (95)
T 2qvo_A 39 KVNSPHSYVWLIIKKFEEAKMV-ECELEGR 67 (95)
T ss_dssp HSSSCHHHHHHHHHHHHHTTSE-EEEEETT
T ss_pred HHCcCHHHHHHHHHHHHHCcCc-cCCCCCC
Confidence 4566888899999999999999 5555544
No 225
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=22.91 E-value=40 Score=27.28 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=38.9
Q ss_pred heeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCCCCCCcee
Q 004841 665 ASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFR 725 (728)
Q Consensus 665 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~ 725 (728)
..|++.+.. +.++..+|...+ ..+...+-+.+..|.+.|+|++..+.+..|.
T Consensus 26 ~~Il~~L~~-~~~~~~ela~~l--------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y 77 (98)
T 3jth_A 26 LQILCMLHN-QELSVGELCAKL--------QLSQSALSQHLAWLRRDGLVTTRKEAQTVYY 77 (98)
T ss_dssp HHHHHHTTT-SCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEECCTTCCEE
T ss_pred HHHHHHHhc-CCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEE
Confidence 356666665 778888777644 3567889999999999999998876555543
No 226
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=22.37 E-value=98 Score=25.17 Aligned_cols=43 Identities=26% Similarity=0.215 Sum_probs=34.2
Q ss_pred HHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 567 ASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 567 ~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
+.||..... + ++..+|+..+|+++..+.+.+..|. +.+++.+.
T Consensus 11 ~~IL~~i~~-~-~~~t~La~~~~ls~~~~~~~l~~L~--~~GLI~~~ 53 (95)
T 1r7j_A 11 QAILEACKS-G-SPKTRIMYGANLSYALTGRYIKMLM--DLEIIRQE 53 (95)
T ss_dssp HHHHHHHTT-C-BCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHHc-C-CCHHHHHHHhCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 455655554 3 8999999999999999999999997 45777654
No 227
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=22.08 E-value=85 Score=31.93 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=35.1
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhh
Q 004841 564 TYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSC 604 (728)
Q Consensus 564 ~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~ 604 (728)
.-+..||.++++...+|.++|++.+|++...+.+.|..|..
T Consensus 5 ~r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~ 45 (321)
T 1bia_A 5 TVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRD 45 (321)
T ss_dssp HHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34566777778878899999999999999999999998864
No 228
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=21.93 E-value=26 Score=30.69 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=36.1
Q ss_pred hheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCC
Q 004841 664 DASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 718 (728)
Q Consensus 664 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 718 (728)
+..|.+.+.....++..+|-..+ ..+...+.+++..|.+.|+|+|..
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKL--------GISETAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEeccc
Confidence 44566666666778888877743 457889999999999999998753
No 229
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=21.84 E-value=61 Score=26.82 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=34.8
Q ss_pred HHHhhcCCCCc-CHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004841 569 ALLLFNSSDRL-SYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 614 (728)
Q Consensus 569 iLllFn~~~~~-t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 614 (728)
|+-.+...+.+ |..+|++.+|++...+.++|..|.. .+++...+
T Consensus 33 I~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~--~GlI~~~~ 77 (102)
T 2b0l_A 33 IFEELDGNEGLLVASKIADRVGITRSVIVNALRKLES--AGVIESRS 77 (102)
T ss_dssp HTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEE
T ss_pred HHhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEe
Confidence 44555555667 9999999999999999999999974 56776554
No 230
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=21.70 E-value=41 Score=30.35 Aligned_cols=52 Identities=10% Similarity=0.138 Sum_probs=34.9
Q ss_pred hheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccC--CCCCCc
Q 004841 664 DASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD--KSNPNM 723 (728)
Q Consensus 664 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~--~~d~~~ 723 (728)
+..|...+.....++..+|-.. ...+.+.+-+.|..|.++|||+|. +.|+..
T Consensus 47 ~~~iL~~L~~~~~~t~~eLa~~--------l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~ 100 (168)
T 2nyx_A 47 QFRTLVILSNHGPINLATLATL--------LGVQPSATGRMVDRLVGAELIDRLPHPTSRRE 100 (168)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHH--------HTSCHHHHHHHHHHHHHTTSEEEEECSSCSSC
T ss_pred HHHHHHHHHHcCCCCHHHHHHH--------hCCCHHHHHHHHHHHHHCCCEEeccCCCCCCe
Confidence 3444445544556666666553 345788899999999999999994 445433
No 231
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=21.31 E-value=30 Score=30.23 Aligned_cols=47 Identities=4% Similarity=0.061 Sum_probs=34.4
Q ss_pred hheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCC
Q 004841 664 DASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 718 (728)
Q Consensus 664 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 718 (728)
+..|...+.....++..+|-.. +..+.+.+-..|..|.++|||+|.+
T Consensus 33 q~~iL~~l~~~~~~t~~eLa~~--------l~~~~~tvs~~l~~Le~~Glv~r~~ 79 (145)
T 3g3z_A 33 LFAVLYTLATEGSRTQKHIGEK--------WSLPKQTVSGVCKTLAGQGLIEWQE 79 (145)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEeecc
Confidence 4445555555566777777652 3457888999999999999999954
No 232
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.24 E-value=95 Score=26.79 Aligned_cols=50 Identities=24% Similarity=0.250 Sum_probs=39.7
Q ss_pred EcHHHHHHHHhhc-CCCCcCHHHHHHHh-----CCCHHHHHHHHHHhhhccccccccC
Q 004841 562 VTTYQASALLLFN-SSDRLSYSEIMTQL-----NLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 562 vs~~Q~~iLllFn-~~~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
+|..-..||..|. ....+|.+||.+.+ +++...+-|+|..|. ..+++.+.
T Consensus 9 ~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~--e~Glv~~~ 64 (131)
T 2o03_A 9 STRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMA--SSGLVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH--TTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH--HCCCEEEE
Confidence 4555667776664 44589999999998 899999999999997 45777664
No 233
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=21.09 E-value=89 Score=29.62 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=35.4
Q ss_pred HHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 568 SALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 568 ~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
+|+.+-.++..++..+|++.+|++...+.++|..|. +.+++.+.
T Consensus 10 ~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le--~~GlV~r~ 53 (214)
T 3hrs_A 10 CLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLL--AEELLIKD 53 (214)
T ss_dssp HHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEEe
Confidence 344444566789999999999999999999999997 45777664
No 234
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=21.06 E-value=27 Score=31.21 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=34.3
Q ss_pred hhheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCC
Q 004841 663 IDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 718 (728)
Q Consensus 663 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 718 (728)
-+..|...+.....++..+|-.. +..+...+-+.|..|.++|||+|..
T Consensus 50 ~~~~iL~~l~~~~~~t~~ela~~--------l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 50 PEWRVITILALYPGSSASEVSDR--------TAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHHhCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEeeec
Confidence 34455556665667777776653 3457788999999999999999954
No 235
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=20.91 E-value=26 Score=31.20 Aligned_cols=48 Identities=10% Similarity=0.082 Sum_probs=33.3
Q ss_pred hhheeeecc-cccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCC
Q 004841 663 IDASIVRIM-KSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 718 (728)
Q Consensus 663 i~A~IVRim-K~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 718 (728)
-+..|...+ .....++..+|-. ....+...+-+.|..|.++|||+|..
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~--------~l~i~~~tvs~~l~~Le~~Gli~r~~ 96 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSG--------ALKVTNGNVSGLVNRLIKDGMVVKAM 96 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHH--------HCSSCCSCHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHHHHcCCCCCHHHHHH--------HHCCChhhHHHHHHHHHHCCCEEeec
Confidence 344555556 4555677666655 23456677899999999999999964
No 236
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=20.60 E-value=23 Score=30.59 Aligned_cols=47 Identities=13% Similarity=0.224 Sum_probs=33.7
Q ss_pred hheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCC
Q 004841 664 DASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 718 (728)
Q Consensus 664 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 718 (728)
+..|...+.....++..+|-..+ ..+.+.+.+.|..|.++|||+|.+
T Consensus 31 ~~~iL~~l~~~~~~~~~ela~~l--------~~s~~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 31 QVACLLRIHREPGIKQDELATFF--------HVDKGTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp HHHHHHHHHHSTTCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeec
Confidence 33444445455667777766633 457888999999999999999953
No 237
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=20.50 E-value=48 Score=28.44 Aligned_cols=48 Identities=13% Similarity=0.328 Sum_probs=32.8
Q ss_pred eeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccC--CCCCC
Q 004841 667 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD--KSNPN 722 (728)
Q Consensus 667 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~--~~d~~ 722 (728)
|...+.....++..+|.. ....+.+.+-+.|..|.++|||+|. +.|+.
T Consensus 39 iL~~l~~~~~~~~~~la~--------~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R 88 (138)
T 1jgs_A 39 VLCSIRCAACITPVELKK--------VLSVDLGALTRMLDRLVCKGWVERLPNPNDKR 88 (138)
T ss_dssp HHHHHHHHSSBCHHHHHH--------HHTCCHHHHHHHHHHHHHTTSEEEEECTTCSS
T ss_pred HHHHHHhcCCCCHHHHHH--------HHCCChHHHHHHHHHHHHCCCEEecCCcccCc
Confidence 334444445666666654 2345788899999999999999985 44543
No 238
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=20.49 E-value=35 Score=30.26 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=36.1
Q ss_pred hheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccC
Q 004841 664 DASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD 717 (728)
Q Consensus 664 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~ 717 (728)
+-.|.+.+.....++..+|-. .+..+...+.+++..|.++|+|+|-
T Consensus 11 d~~il~~L~~~~~~s~~ela~--------~lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 11 DMQLVKILSENSRLTYRELAD--------ILNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHH--------HTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 335666677777888888766 3456889999999999999999863
No 239
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=20.46 E-value=96 Score=28.84 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=37.2
Q ss_pred EcHHHHHHHHhhc----C-CCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004841 562 VTTYQASALLLFN----S-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 613 (728)
Q Consensus 562 vs~~Q~~iLllFn----~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 613 (728)
+|.-|..||.... + ....|+.||++.+|++...+.++|..|. +.+.+.+.
T Consensus 3 lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le--~~G~i~~~ 57 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALE--KKGYIERK 57 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEECC
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHH--HCCCEEec
Confidence 3566777775543 2 2368999999999999999999999996 34555554
No 240
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=20.00 E-value=49 Score=28.60 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=31.1
Q ss_pred eeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCC
Q 004841 667 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 718 (728)
Q Consensus 667 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 718 (728)
|...+.....++..+|-.. +..+.+.+-+.|..|.++|||+|..
T Consensus 34 iL~~l~~~~~~t~~~la~~--------l~~s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 34 YLVRVCENPGIIQEKIAEL--------IKVDRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp HHHHHHHSTTEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHCcCcCHHHHHHH--------HCCCHhHHHHHHHHHHHCCCEEeec
Confidence 3344444556666666553 3457888999999999999999953
Done!