BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004844
(728 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZIX8|KDM3A_CHICK Lysine-specific demethylase 3A OS=Gallus gallus GN=KDM3A PE=2 SV=1
Length = 1325
Score = 213 bits (542), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 162/480 (33%), Positives = 220/480 (45%), Gaps = 109/480 (22%)
Query: 250 ILDNKLTNLRQNRAETGTDM------LCKAASREGSD-------DNLLYCPDSTKIQEDE 296
ILD+ +L QNR T TDM L + G D DN L C + +
Sbjct: 909 ILDDIFASLVQNR--TVTDMPKKPQGLTIKPTIMGFDTPHYWLCDNRLLCLQDPNNESNW 966
Query: 297 ELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLA 356
+FR + W +G+PV+V V K+ W P E+ E + EV ++C
Sbjct: 967 NVFR--ECWKQGQPVMVSGVHHKLNADLWRP--------ESFRKEFGQQ--EVDLVNC-- 1012
Query: 357 SCEVEISTRQFFKGYTQGRTYDNFW------------PEMLKLKDWPPSDKFEDLMPRHC 404
T + G T G +D F P +LKLKDWPP + F D+MP
Sbjct: 1013 ------RTNEIITGATVGDFWDGFEDISSRLRTEEGEPMVLKLKDWPPGEDFRDMMPSRF 1066
Query: 405 DEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHC 464
D+ + +P EY+ R G LNLA +LP+ ++PDLGPK Y AYG+ R T LH
Sbjct: 1067 DDLMKNIPLPEYTR-RGGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHL 1125
Query: 465 DMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKE 524
D+SDA N++ + + + + + + LK +QDG
Sbjct: 1126 DVSDAANVMVYV-----------GIPKGQADQEEEVLK--TIQDG--------------- 1157
Query: 525 DTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPK 584
D+D I F SR E GALW I+ +D K
Sbjct: 1158 DSDELTIK-----------RFTESR------------------EKPGALWHIYAAKDTEK 1188
Query: 585 LEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEA 644
+ +L+K +E +PV+ PIHDQ +YL +K+L +E+GV+ W Q LG+
Sbjct: 1189 IREFLKKVAEE--QGQENPVDH--DPIHDQSWYLDRSLRKRLHQEYGVQGWAIVQFLGDV 1244
Query: 645 VFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVF 704
VFIPAG PHQV NL SC KVA DFVSPE+V C LT+EFR L H EDKL+V V
Sbjct: 1245 VFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSHTHTNHEDKLQVKNVI 1304
>sp|Q9Y4C1|KDM3A_HUMAN Lysine-specific demethylase 3A OS=Homo sapiens GN=KDM3A PE=1 SV=4
Length = 1321
Score = 209 bits (533), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 160/479 (33%), Positives = 221/479 (46%), Gaps = 108/479 (22%)
Query: 250 ILDNKLTNLRQNRAETGTDM------LCKAASREGSD-------DNLLYCPDSTKIQEDE 296
ILD+ +L QN+ T +D+ L S G D DN L C + +
Sbjct: 906 ILDDIFASLVQNK--TTSDLSKRPQGLTIKPSILGFDTPHYWLCDNRLLCLQDPNNKSNW 963
Query: 297 ELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLA 356
+FR + W +G+PV+V V K+ W+P + E EV ++C
Sbjct: 964 NVFR--ECWKQGQPVMVSGVHHKLNSELWKPESFRKEFGEQ----------EVDLVNC-- 1009
Query: 357 SCEVEISTRQFFKGYTQGRTYDNFW-----------PEMLKLKDWPPSDKFEDLMPRHCD 405
T + G T G +D F P +LKLKDWPP + F D+MP D
Sbjct: 1010 ------RTNEIITGATVGDFWDGFEDVPNRLKNEKEPMVLKLKDWPPGEDFRDMMPSRFD 1063
Query: 406 EFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCD 465
+ ++ +P EY+ R G LNLA +LP+ ++PDLGPK Y AYG+ R T LH D
Sbjct: 1064 DLMANIPLPEYTR-RDGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLD 1122
Query: 466 MSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKED 525
+SDA N++ + + + + E + LK +QDG
Sbjct: 1123 VSDAANVMVYV-----------GIPKGQCEQEEEVLK--TIQDG---------------- 1153
Query: 526 TDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKL 585
DS DE+ F EG E GALW I+ +D K+
Sbjct: 1154 -------DS---------------DELTIKRFI----EGK--EKPGALWHIYAAKDTEKI 1185
Query: 586 EAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAV 645
+L+K +E +P + PIHDQ +YL +K+L +E+GV+ W Q LG+ V
Sbjct: 1186 REFLKKVSEE--QGQENPADH--DPIHDQSWYLDRSLRKRLHQEYGVQGWAIVQFLGDVV 1241
Query: 646 FIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVF 704
FIPAG PHQV NL SC KVA DFVSPE+V C LT+EFR L + H EDKL+V V
Sbjct: 1242 FIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSQTHTNHEDKLQVKNVI 1300
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 123 RVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYV 171
R C+ C T+I +LH CP+C + +C+ C + + G A F ++
Sbjct: 659 REMCDVCDTTIFNLHWVCPRCGFGVCVDCYRMKRKNCQQGAAYKTFSWL 707
>sp|Q6IRB8|KD3AA_XENLA Lysine-specific demethylase 3A-A OS=Xenopus laevis GN=kdm3a-a PE=2
SV=1
Length = 1331
Score = 201 bits (511), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 143/424 (33%), Positives = 200/424 (47%), Gaps = 78/424 (18%)
Query: 281 DNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDS 340
DN L C + + +FR + W +G+PVIV + + + W P R +
Sbjct: 957 DNRLLCLQDPNNKSNWNVFR--ECWKQGQPVIVSGIHNNLNSELWRPESFRREFGD---- 1010
Query: 341 EVSSKMSEVKAIDCLASCEVEIST-RQFFKGY--TQGRTYDNFWPEM-LKLKDWPPSDKF 396
E ++C + + +T F++G+ R ++ M LKLKDWPP + F
Sbjct: 1011 ------QEADLVNCRTNDIITGATVGDFWEGFEDISARLKNDKGEAMVLKLKDWPPGEDF 1064
Query: 397 EDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRG 456
D M ++ ++ +P EY+ R G LNLA +LP+ ++PDLGPK Y AYG+ R
Sbjct: 1065 RDTMLSRFEDLMNNIPLPEYTR-REGKLNLAARLPAYFVRPDLGPKMYNAYGLITPEDRK 1123
Query: 457 DSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEE 516
T LH D+SDA N++ + V K EH + +QDG
Sbjct: 1124 YGTTNLHLDVSDATNVMVY-------------VGIPKGEHDQEQEVIRTIQDG------- 1163
Query: 517 PNSDNNKEDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDI 576
D E+ + EFK E GALW I
Sbjct: 1164 ----------DADELTIKRYI------EFK---------------------EKPGALWHI 1186
Query: 577 FRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWT 636
F +D K+ +L+K +E H +P + PIHDQ +YL + +K+L +E GV+ W
Sbjct: 1187 FAAKDTEKIRQFLKKVAEEQGHE--NPPDH--DPIHDQSWYLDNTLRKRLLQEHGVQGWA 1242
Query: 637 FEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRARED 696
Q LG+AVFIPAG PHQV NL SC KVA DFVSPE+V C LT+EFR L H ED
Sbjct: 1243 IVQFLGDAVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSHTHTNHED 1302
Query: 697 KLEV 700
KL+V
Sbjct: 1303 KLQV 1306
Score = 37.0 bits (84), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 123 RVYCNHCATSIIDLHRSCPKCSYELCLTCCK 153
R C+ C T+I +LH CPKC + +C+ C +
Sbjct: 680 REMCDACDTTIFNLHWVCPKCGFGVCVDCYR 710
>sp|Q5HZN1|KD3AB_XENLA Lysine-specific demethylase 3A-B OS=Xenopus laevis GN=kdm3a-b PE=2
SV=1
Length = 1334
Score = 199 bits (507), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 143/424 (33%), Positives = 199/424 (46%), Gaps = 78/424 (18%)
Query: 281 DNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDS 340
DN L C + + +FR + W +G+PV+V V + + W P R +
Sbjct: 960 DNRLLCLQDPNNKSNWNVFR--ECWKQGQPVMVSGVHNNLNSELWRPESFRREFGDQ--- 1014
Query: 341 EVSSKMSEVKAIDCLASCEVEIST-RQFFKGY--TQGRTYDNFWPEM-LKLKDWPPSDKF 396
E ++C + + +T F+ G+ GR ++ M LKLKDWPP + F
Sbjct: 1015 -------EADLVNCRTNDIITGATVGDFWDGFEDIPGRLKNDTGESMVLKLKDWPPGEDF 1067
Query: 397 EDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRG 456
D M ++ ++ +P EY+ R G LNLA +LP+ ++PDLGPK Y AYG+ R
Sbjct: 1068 RDTMLSRFEDLMNNIPLPEYTR-REGKLNLAARLPTYFVRPDLGPKMYNAYGLITPEDRK 1126
Query: 457 DSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEE 516
T LH D+SDA N++ + V K EH +QDG
Sbjct: 1127 YGTTNLHLDVSDAANVMVY-------------VGIPKGEHDQDQEVLRTIQDG------- 1166
Query: 517 PNSDNNKEDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDI 576
D E+ + EFK E GALW I
Sbjct: 1167 ----------DADELTIKRFI------EFK---------------------EKPGALWHI 1189
Query: 577 FRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWT 636
+ +D K+ +L+K +E H +P + PIHDQ +YL + +K+L +E GV+ W
Sbjct: 1190 YAAKDTEKIRQFLKKVAEEEGHE--NPPDH--DPIHDQSWYLDNILRKRLLQEHGVQGWA 1245
Query: 637 FEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRARED 696
Q LG+AVFIPAG PHQV NL SC KVA DFVSPE+V C LT+EFR L H ED
Sbjct: 1246 IVQFLGDAVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFCLTQEFRYLSHTHTNHED 1305
Query: 697 KLEV 700
KL+V
Sbjct: 1306 KLQV 1309
Score = 37.0 bits (84), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 123 RVYCNHCATSIIDLHRSCPKCSYELCLTCCK 153
R C+ C T+I +LH CPKC + +C+ C +
Sbjct: 681 REMCDACDTTIFNLHWVCPKCGFGVCVDCYR 711
>sp|Q6PCM1|KDM3A_MOUSE Lysine-specific demethylase 3A OS=Mus musculus GN=Kdm3a PE=1 SV=1
Length = 1323
Score = 184 bits (466), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 150/479 (31%), Positives = 211/479 (44%), Gaps = 106/479 (22%)
Query: 250 ILDNKLTNLRQNRAETGTDM----LCKAASREGSD-------DNLLYCPDSTKIQEDEEL 298
ILD+ +L QN+ + + L S G D DN L C + + +
Sbjct: 906 ILDDIFASLVQNKTSSDSSKRPQGLTIKPSILGFDTPHYWLCDNRLLCLQDPNNKSNWNV 965
Query: 299 FRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASC 358
FR + W +G+PV+V V K+ W+P + E EV ++C
Sbjct: 966 FR--ECWKQGQPVMVSGVHHKLNTELWKPESFRKEFGEQ----------EVDLVNC---- 1009
Query: 359 EVEISTRQFFKGYTQGRTYDNFW-------------PEMLKLKDWPPSDKFEDLMPRHCD 405
T + G T G +D F P +LKLKDWPP + F D+MP D
Sbjct: 1010 ----RTNEIITGATVGDFWDGFEDVPNRLKNDKEKEPMVLKLKDWPPGEDFRDMMPSRFD 1065
Query: 406 EFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCD 465
+ ++ +P EY+ R G LNLA +LP+ ++PDLGPK
Sbjct: 1066 DLMANIPLPEYTR-RDGKLNLASRLPNYFVRPDLGPK----------------------- 1101
Query: 466 MSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKED 525
M +A ++T + T H V D +V G+ P +E+
Sbjct: 1102 MYNAYGLITPEDRKYGTTNLHLDVS---------DAANVMVYVGI------PKGQCEQEE 1146
Query: 526 TDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKL 585
+ I D + DE+ F EG E GALW I+ +D K+
Sbjct: 1147 EVLRTIQDGD-------------SDELTIKRFI----EGK--EKPGALWHIYAAKDTEKI 1187
Query: 586 EAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAV 645
+L+K +E +P + PIHDQ +YL +K+L +E+GV+ W Q LG+ V
Sbjct: 1188 REFLKKVSEE--QGQDNPADH--DPIHDQSWYLDRSLRKRLYQEYGVQGWAIVQFLGDVV 1243
Query: 646 FIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVF 704
FIPAG PHQV NL SC KVA DFVSPE+V C LT+EFR L + H EDKL+V V
Sbjct: 1244 FIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSQTHTNHEDKLQVKNVI 1302
Score = 36.6 bits (83), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 123 RVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYV 171
R C+ C T+I +LH CP+C + +C+ C + + G A F ++
Sbjct: 659 REMCDVCDTTIFNLHWVCPRCGFGVCVDCYRMKRKNCQQGAAYKTFSWI 707
>sp|Q63679|KDM3A_RAT Lysine-specific demethylase 3A OS=Rattus norvegicus GN=Kdm3a PE=2
SV=1
Length = 1214
Score = 183 bits (464), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 152/481 (31%), Positives = 213/481 (44%), Gaps = 110/481 (22%)
Query: 250 ILDNKLTNLRQNRAETGTDM------LCKAASREGSD-------DNLLYCPDSTKIQEDE 296
ILD+ +L QN+ T +D+ L S G D DN L C + +
Sbjct: 790 ILDDIFASLVQNK--TSSDLSKRPQGLTIKPSILGFDTPHYWLCDNRLLCLQDPNNKSNW 847
Query: 297 ELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLA 356
+FR + W +G+PV+V V K+ W+P + E EV ++C
Sbjct: 848 NVFR--ECWKQGQPVMVSGVHHKLNTELWKPESFRKEFGEQ----------EVDLVNC-- 893
Query: 357 SCEVEISTRQFFKGYTQGRTYDNFW-------------PEMLKLKDWPPSDKFEDLMPRH 403
T + G T G +D F P +LKLKDWPP + F D+MP
Sbjct: 894 ------RTNEIITGATVGDFWDGFEDVPNRLKNEKEKEPMVLKLKDWPPGEDFRDMMPSR 947
Query: 404 CDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLH 463
D+ ++ +P EY+ R G LNLA +LP+ ++PDLGPK
Sbjct: 948 FDDLMANIPLPEYTR-RDGKLNLASRLPNYFVRPDLGPK--------------------- 985
Query: 464 CDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNK 523
M +A ++T + T H V D +V G+ P +
Sbjct: 986 --MYNAYGLITPEDRKYGTTNLHLDVS---------DAANVMVYVGI------PKGQCEQ 1028
Query: 524 EDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVP 583
E+ + I D + DE+ F EG E GALW I+ +D
Sbjct: 1029 EEEVLRTIQDGD-------------SDELTIKRFI----EGK--EKPGALWHIYAAKDTE 1069
Query: 584 KLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGE 643
K+ +L+K +E +P + PIHDQ +YL +K+L +E+GV+ W Q LG+
Sbjct: 1070 KIREFLKKVSEEQGQE--NPADH--DPIHDQSWYLDRSLRKRLYQEYGVQGWAIVQFLGD 1125
Query: 644 AVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLV 703
VFIPAG PHQV NL SC KVA DFVSPE+V C LT+EFR L + H EDKL+V V
Sbjct: 1126 VVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRHLSQTHTNHEDKLQVKNV 1185
Query: 704 F 704
Sbjct: 1186 I 1186
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 123 RVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYV 171
R C+ C T+I +LH CP+C + +C+ C + + G A F ++
Sbjct: 543 REMCDVCDTTIFNLHWVCPRCGFGVCVDCYRLKRKNCQQGAAYKTFSWI 591
>sp|Q7LBC6|KDM3B_HUMAN Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=2
Length = 1761
Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 84/133 (63%), Gaps = 4/133 (3%)
Query: 568 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLK 627
E GALW I+ +D K+ LRK +E +P + PIHDQ +YL +K+L
Sbjct: 1608 EKPGALWHIYAAKDAEKIRELLRKVGEE--QGQENPPDH--DPIHDQSWYLDQTLRKRLY 1663
Query: 628 EEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLL 687
EE+GV+ W Q LG+AVFIPAG PHQV NL SC KVA DFVSPE+V C RLT+EFR L
Sbjct: 1664 EEYGVQGWAIVQFLGDAVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFRLTQEFRHL 1723
Query: 688 PKNHRAREDKLEV 700
H EDKL+V
Sbjct: 1724 SNTHTNHEDKLQV 1736
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 49/283 (17%)
Query: 237 ISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDE 296
++D +KE +++V+ L N L T LC D L C + +
Sbjct: 1359 LTDTQKEVKEMVMGL-NVLD------PHTSHSWLC---------DGRLLCLHDPSNKNNW 1402
Query: 297 ELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLA 356
++FR + W +G+PV+V V K+ W+P + + +V ++C
Sbjct: 1403 KIFR--ECWKQGQPVLVSGVHKKLKSELWKPEAFSQEFGDQ----------DVDLVNC-R 1449
Query: 357 SCEV--EISTRQFFKGY----TQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISA 410
+C + ++ R F+ G+ + R+ D P +LKLKDWPP + F D+MP ++ +
Sbjct: 1450 NCAIISDVKVRDFWDGFEIICKRLRSEDG-QPMVLKLKDWPPGEDFRDMMPTRFEDLMEN 1508
Query: 411 LPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAV 470
LP EY+ R G LNLA +LPS ++PDLGPK Y AYG+ R T LH D+SDAV
Sbjct: 1509 LPLPEYTK-RDGRLNLASRLPSYFVRPDLGPKMYNAYGLITAEDRRVGTTNLHLDVSDAV 1567
Query: 471 NIL----------THTEEVLLTEEQHSAVERLKKEHRAQDLKE 503
N++ H EEVL T ++ A E K+ R D KE
Sbjct: 1568 NVMVYVGIPIGEGAHDEEVLKTIDEGDADEVTKQ--RIHDGKE 1608
>sp|Q6ZPY7|KDM3B_MOUSE Lysine-specific demethylase 3B OS=Mus musculus GN=Kdm3b PE=1 SV=2
Length = 1562
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 84/133 (63%), Gaps = 4/133 (3%)
Query: 568 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLK 627
E GALW I+ +D K+ LRK +E +P + PIHDQ +YL +K+L
Sbjct: 1409 EKPGALWHIYAAKDAEKIRELLRKVGEE--QGQENPPDH--DPIHDQSWYLDQILRKRLF 1464
Query: 628 EEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLL 687
EE+GV+ W Q LG+AVFIPAG PHQV NL SC KVA DFVSPE+V C RLT+EFR L
Sbjct: 1465 EEYGVQGWAIVQFLGDAVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFRLTQEFRHL 1524
Query: 688 PKNHRAREDKLEV 700
H EDKL+V
Sbjct: 1525 SNTHTNHEDKLQV 1537
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 114/219 (52%), Gaps = 31/219 (14%)
Query: 301 FQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEV 360
F++ W +G+PV+V V K+ W+P + + +V ++C +C +
Sbjct: 1206 FRECWKQGQPVLVSGVHKKLKSELWKPEAFSQEFGDQ----------DVDLVNC-RNCAI 1254
Query: 361 --EISTRQFFKGY----TQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQ 414
++ R F+ G+ + R+ D P +LKLKDWPP + F D+MP ++ + LP
Sbjct: 1255 ISDVKVRDFWDGFEIICKRLRSEDG-QPMVLKLKDWPPGEDFRDMMPTRFEDLMENLPLP 1313
Query: 415 EYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNIL- 473
EY+ R G LNLA +LPS ++PDLGPK Y AYG+ R T LH D+SDAVN++
Sbjct: 1314 EYTK-RDGRLNLASRLPSYFVRPDLGPKMYNAYGLITAEDRRVGTTNLHLDVSDAVNVMV 1372
Query: 474 ---------THTEEVLLTEEQHSAVERLKKEHRAQDLKE 503
H EEVL T ++ A E K+ R D KE
Sbjct: 1373 YVGIPVGEGAHDEEVLKTIDEGDADEVTKQ--RIHDGKE 1409
>sp|P97609|HAIR_RAT Protein hairless OS=Rattus norvegicus GN=Hr PE=2 SV=2
Length = 1181
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 157/396 (39%), Gaps = 92/396 (23%)
Query: 299 FR-FQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLAS 357
FR FQ+HW +G+PV+V + K LS M L V + + + ++D A
Sbjct: 851 FRLFQEHWRQGQPVLVSGI-QKTLRLSLWGMEALGTLGGQVQTLTALGPPQPTSLDSTA- 908
Query: 358 CEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYS 417
F+KG++ + L P DK E + + S+LP EY
Sbjct: 909 ---------FWKGFSHPEARPKLDEGSVLLLHRPLGDKDESRV----ENLASSLPLPEYC 955
Query: 418 DPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHC-DMSDAVNILTHT 476
G LNLA LP G+ L P+ + AYGV RG TK C ++SD ++IL H
Sbjct: 956 A-HQGKLNLASYLPLGLTLHPLEPQLWAAYGVNSH--RGHLGTKNLCVEVSDLISILVHA 1012
Query: 477 EEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDTDVSEINDSEL 536
E +L +RAQ K+ L
Sbjct: 1013 EA------------QLPPWYRAQ--KDFL------------------------------- 1027
Query: 537 LPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEF 596
SG+ GE P S+ + V W +FR QD + + F
Sbjct: 1028 --SGLDGE-----------GLWSPGSQTSTV------WHVFRAQDA--------QRIRRF 1060
Query: 597 RHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVR 656
+ C + P YL S +++L+EE+GV WT Q GEAV +PAG PHQV+
Sbjct: 1061 LQMVCPAGAGTLEPGAPGSCYLDSGLRRRLREEWGVSCWTLLQAPGEAVLVPAGAPHQVQ 1120
Query: 657 NLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHR 692
L S V F+SPE +L + LP +HR
Sbjct: 1121 GLVSTISVTQHFLSPETSALSAQLCHQGASLPPDHR 1156
>sp|O43593|HAIR_HUMAN Protein hairless OS=Homo sapiens GN=HR PE=1 SV=5
Length = 1189
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 103/401 (25%), Positives = 158/401 (39%), Gaps = 111/401 (27%)
Query: 301 FQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEV 360
FQ+HW +G+PV+V + + G W + + +V+A+ L +
Sbjct: 862 FQEHWRQGQPVLVSGIQRTLQGNLWG------------TEALGALGGQVQALSPLGPPQP 909
Query: 361 E-ISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLM---------PRHCDEFISA 410
+ + F++G++ WPE+ P SD+ L+ + ++
Sbjct: 910 SSLGSTTFWEGFS--------WPELR-----PKSDEGSVLLLHRALGDEDTSRVENLAAS 956
Query: 411 LPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHC-DMSDA 469
LP EY G LNLA LP G+ L P+ + AYGV+ RG TK C +++D
Sbjct: 957 LPLPEYCA-LHGKLNLASYLPPGLALRPLEPQLWAAYGVSPH--RGHLGTKNLCVEVADL 1013
Query: 470 VNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDTDVS 529
V+IL H + L HRAQ K+ L
Sbjct: 1014 VSILVHADTPL------------PAWHRAQ--KDFL------------------------ 1035
Query: 530 EINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYL 589
SG+ GE S G+ V + +W +FR QD
Sbjct: 1036 ---------SGLDGEGLWS--------------PGSQVST---VWHVFRAQDA------- 1062
Query: 590 RKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPA 649
+ + F + C + P YL + +++L+EE+GV WT Q GEAV +PA
Sbjct: 1063 -QRIRRFLQMVCPAGAGALEPGAPGSCYLDAGLRRRLREEWGVSCWTLLQAPGEAVLVPA 1121
Query: 650 GCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKN 690
G PHQV+ L S V F+SPE +L + LP +
Sbjct: 1122 GAPHQVQGLVSTVSVTQHFLSPETSALSAQLCHQGPSLPPD 1162
Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 126 CNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQ 169
C+ C + + H CP+CS+ LC+ C + GR +A + Q
Sbjct: 600 CSRCHHGLFNTHWRCPRCSHRLCVACGRVAGTGRAREKAGFQEQ 643
>sp|Q61645|HAIR_MOUSE Protein hairless OS=Mus musculus GN=Hr PE=2 SV=2
Length = 1182
Score = 100 bits (248), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 152/393 (38%), Gaps = 91/393 (23%)
Query: 301 FQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEV 360
FQ+HW +G+PV+V + K LS M L V + + + +D A
Sbjct: 855 FQEHWRQGQPVLVSGI-QKTLRLSLWGMEALGTLGGQVQTLTALGPPQPTNLDSTA---- 909
Query: 361 EISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPR 420
F++G++ T + L DK + S+LP EY
Sbjct: 910 ------FWEGFSHPETRPKLDEGSVLLLHRTLGDKDASRV----QNLASSLPLPEYCA-H 958
Query: 421 AGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHC-DMSDAVNILTHTEEV 479
G LNLA LP G+ L P+ + AYGV RG TK C ++SD ++IL H E
Sbjct: 959 QGKLNLASYLPLGLTLHPLEPQLWAAYGVNSH--RGHLGTKNLCVEVSDLISILVHAEA- 1015
Query: 480 LLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDTDVSEINDSELLPS 539
+L +RAQ K+ L S
Sbjct: 1016 -----------QLPPWYRAQ--KDFL---------------------------------S 1029
Query: 540 GIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHV 599
G+ GE P S+ + V W +FR QD + + F +
Sbjct: 1030 GLDGE-----------GLWSPGSQTSTV------WHVFRAQDA--------QRIRRFLQM 1064
Query: 600 YCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLK 659
C + P YL + +++L+EE+GV WT Q GEAV +PAG PHQV+ L
Sbjct: 1065 VCPAGAGTLEPGAPGSCYLDAGLRRRLREEWGVSCWTLLQAPGEAVLVPAGAPHQVQGLV 1124
Query: 660 SCTKVAVDFVSPENVDECLRLTKEFRLLPKNHR 692
S V F+SPE +L + LP +HR
Sbjct: 1125 STISVTQHFLSPETSALSAQLYHQGASLPPDHR 1157
>sp|Q15652|JHD2C_HUMAN Probable JmjC domain-containing histone demethylation protein 2C
OS=Homo sapiens GN=JMJD1C PE=1 SV=2
Length = 2540
Score = 96.3 bits (238), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 87/149 (58%), Gaps = 11/149 (7%)
Query: 571 GALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEF 630
GALW I+ +DV K+ +L+K KE + + P PI DQ +Y++ + +++L EE+
Sbjct: 2388 GALWHIYAGKDVDKIREFLQKISKE-QGLEVLPEHD---PIRDQSWYVNKKLRQRLLEEY 2443
Query: 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKN 690
GV T Q LG+A+ +PAG HQV+N SC +V DFVSPE++ E LT+E RLL K
Sbjct: 2444 GVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELRLL-KE 2502
Query: 691 HRAREDKLEVYLVF------IKRKCYVHE 713
+DKL+V + + R +HE
Sbjct: 2503 EINYDDKLQVKNILYHAVKEMVRALKIHE 2531
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 94/178 (52%), Gaps = 14/178 (7%)
Query: 301 FQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEV 360
F++ W +G+P +V V K+ + +W+A E++ + +++ ++C S
Sbjct: 2182 FKECWKQGQPAVVSGVHKKMN------ISLWKA--ESISLDFGDHQADL--LNCKDSIIS 2231
Query: 361 EISTRQFFKGYTQ-GRTYDNFWPE--MLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYS 417
+ ++F+ G+ + + N E +LKLKDWP + F+ +MP ++ + +LP EY
Sbjct: 2232 NANVKEFWDGFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYC 2291
Query: 418 DPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTH 475
+P G NLA LP ++PDLGP+ AYGV T LH ++SD VNIL +
Sbjct: 2292 NPE-GKFNLASHLPGFFVRPDLGPRLCSAYGVVAAKDHDIGTTNLHIEVSDVVNILVY 2348
>sp|Q69ZK6|JHD2C_MOUSE Probable JmjC domain-containing histone demethylation protein 2C
OS=Mus musculus GN=Jmjd1c PE=1 SV=3
Length = 2350
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 82/134 (61%), Gaps = 5/134 (3%)
Query: 571 GALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEF 630
GALW I+ +DV K+ +L+K KE + + P PI DQ +Y++ + +++L EE+
Sbjct: 2198 GALWHIYAGKDVDKIREFLQKISKE-QGLEVLPEHD---PIRDQSWYVNRKLRQRLLEEY 2253
Query: 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKN 690
GV T Q LG+A+ +PAG HQV+N SC +V DFVSPE++ + LT+E RLL K
Sbjct: 2254 GVRACTLIQFLGDAIVLPAGTLHQVQNFHSCVQVTEDFVSPEHLVQSFHLTQELRLL-KE 2312
Query: 691 HRAREDKLEVYLVF 704
+DKL+V +
Sbjct: 2313 EINYDDKLQVKNIL 2326
Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 93/178 (52%), Gaps = 14/178 (7%)
Query: 301 FQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEV 360
F++ W +G+P +V V K+ + +W+A E++ + +++ ++C S
Sbjct: 1992 FKECWKQGQPAVVSGVHKKMN------ISLWKA--ESISLDFGDHQADL--LNCKDSIVS 2041
Query: 361 EISTRQFFKGYTQ-GRTYDNFWPE--MLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYS 417
+ ++F+ G+ + + N E +LKLKD P + F+ +MP ++F+ LP EY
Sbjct: 2042 NANVKEFWDGFEEVSKRQKNKGGETVVLKLKDCPSGEDFKAMMPTRYEDFLRCLPLPEYC 2101
Query: 418 DPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTH 475
+P G NLA LP ++PDLGP+ AYGVA T LH + SD VN+L +
Sbjct: 2102 NPE-GKFNLASHLPGFFVRPDLGPRLCSAYGVAAAKDHDIGTTNLHIEASDVVNVLVY 2158
>sp|Q9VJ97|JMJD4_DROME JmjC domain-containing protein 4 homolog OS=Drosophila melanogaster
GN=CG7200 PE=2 SV=1
Length = 425
Score = 38.1 bits (87), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 624 KKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENV 674
+K+ +E V +T Q+ EAVF+P+G HQV NL V ++ + N+
Sbjct: 255 EKMLDEHNVRYYTINQRANEAVFVPSGWFHQVWNLTDTISVNHNWFNGCNI 305
>sp|Q9H9V9|JMJD4_HUMAN JmjC domain-containing protein 4 OS=Homo sapiens GN=JMJD4 PE=2 SV=2
Length = 463
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 627 KEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKE 683
+ + P Q+ GE VF+P+G HQV NL + ++V+ N+ R ++
Sbjct: 289 RNQLAGPPLEITQEAGEMVFVPSGWHHQVHNLDDTISINHNWVNGFNLANMWRFLQQ 345
>sp|P40511|SPO22_YEAST Sporulation-specific protein 22 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SPO22 PE=3 SV=2
Length = 975
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 26/125 (20%)
Query: 400 MPRHCDEFISALPFQEYSDP----------RAGILNLAVKLPSGVLKPDLGPKTYIAYGV 449
P++C +FI +P Q+++ P +A IL L + K D K + Y
Sbjct: 697 FPQYCIQFIDLIPVQDFTFPKMYHFTYWRFKATILQLIIAKEKA--KQDQHQKDWDIYEK 754
Query: 450 AEELGRGDSVTKLHCDMSDAVNI-------------LT-HTEEVLLTEEQHSAVERLKKE 495
+EEL +V K + D ++ LT H E L+ +Q ++ LKK
Sbjct: 755 SEELVNSINVMKKSSEFKDGSSLEDRNTLHECFLEALTIHLESALMMPDQTRILDILKKT 814
Query: 496 HRAQD 500
QD
Sbjct: 815 ELYQD 819
>sp|Q08BY5|JMJD4_DANRE JmjC domain-containing protein 4 OS=Danio rerio GN=jmjd4 PE=2 SV=1
Length = 422
Score = 33.5 bits (75), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 633 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVD 675
+P Q+ GE +F+P+G HQV NL+ + ++++ N+D
Sbjct: 246 QPLEIIQEAGEIIFVPSGWHHQVYNLEDTISINHNWLNGCNLD 288
>sp|Q08B84|RN19B_XENLA E3 ubiquitin-protein ligase RNF19B OS=Xenopus laevis GN=rnf19b PE=2
SV=2
Length = 687
Score = 33.1 bits (74), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 88 QICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDL------HRSCP 141
Q C+ Q+ ++R H S + + D+ C C+ II + H +C
Sbjct: 225 QTCDMARQQRAPSLGVRRKHPSGISYGQESGSADDMKSCPRCSAYIIKMNDGSCNHMTCS 284
Query: 142 KCSYELCLTCCKEI 155
C E C C KEI
Sbjct: 285 VCGCEFCWLCMKEI 298
>sp|Q5E8U5|RHLB_VIBF1 ATP-dependent RNA helicase RhlB OS=Vibrio fischeri (strain ATCC
700601 / ES114) GN=rhlB PE=3 SV=2
Length = 432
Score = 33.1 bits (74), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 14/74 (18%)
Query: 576 IFRRQDVP--------------KLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSE 621
IFRR P +++ +H +E HV P ++ H I ++ FY S++
Sbjct: 182 IFRRMPAPTERLNMLFSATLSYRVQELAFEHMQEPEHVVVEPEQKTGHRIKEELFYPSND 241
Query: 622 HKKKLKEEFGVEPW 635
HK L + E W
Sbjct: 242 HKMALLQTLIEEEW 255
>sp|Q4G059|CDA7L_RAT Cell division cycle-associated 7-like protein OS=Rattus norvegicus
GN=Cdca7l PE=2 SV=1
Length = 438
Score = 33.1 bits (74), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 11 CGKCRTKVYCIQCIKQWYP---KMSELDVAEICPFCRRNCNCSVCLHTSG 57
CG R + +C C++ Y + + LD CP CR CNCS C G
Sbjct: 360 CGGVRGQ-FCGPCLRNRYGEDVRTALLDPKWTCPPCRGICNCSYCRRRDG 408
>sp|B5FF87|RHLB_VIBFM ATP-dependent RNA helicase RhlB OS=Vibrio fischeri (strain MJ11)
GN=rhlB PE=3 SV=1
Length = 432
Score = 33.1 bits (74), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 14/74 (18%)
Query: 576 IFRRQDVP--------------KLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSE 621
IFRR P +++ +H +E HV P ++ H I ++ FY S++
Sbjct: 182 IFRRMPAPTERLNMLFSATLSYRVQELAFEHMQEPEHVVVEPEQKTGHRIKEELFYPSND 241
Query: 622 HKKKLKEEFGVEPW 635
HK L + E W
Sbjct: 242 HKMALLQTLIEEEW 255
>sp|Q805K3|P28B_VACCW Zinc finger-containing protein P28b OS=Vaccinia virus (strain
Western Reserve) GN=VACWR012 PE=3 SV=1
Length = 62
Score = 32.7 bits (73), Expect = 9.4, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 16 TKVYCIQCIKQWYPKMSELDVAEICPFCR 44
T ++CI CI W+ E ++ CP CR
Sbjct: 18 THIFCITCINIWHKTRRETGASDNCPICR 46
>sp|Q922M5|CDA7L_MOUSE Cell division cycle-associated 7-like protein OS=Mus musculus
GN=Cdca7l PE=2 SV=1
Length = 438
Score = 32.7 bits (73), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 11 CGKCRTKVYCIQCIKQWYP---KMSELDVAEICPFCRRNCNCSVCLHTSG 57
CG R + +C C++ Y + + LD CP CR CNCS C G
Sbjct: 360 CGGVRGQ-FCGPCLRNRYGEDVRTALLDPKWTCPPCRGICNCSYCRRRDG 408
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 282,561,498
Number of Sequences: 539616
Number of extensions: 12535102
Number of successful extensions: 32958
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 32841
Number of HSP's gapped (non-prelim): 102
length of query: 728
length of database: 191,569,459
effective HSP length: 125
effective length of query: 603
effective length of database: 124,117,459
effective search space: 74842827777
effective search space used: 74842827777
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)