Query 004844
Match_columns 728
No_of_seqs 149 out of 205
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 07:36:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004844.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004844hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ypd_A Probable JMJC domain-co 100.0 2E-131 5E-136 1057.9 15.8 352 290-713 16-370 (392)
2 4gjz_A Lysine-specific demethy 99.2 5.6E-12 1.9E-16 124.0 5.1 35 632-666 198-232 (235)
3 3k2o_A Bifunctional arginine d 99.1 1.4E-10 4.7E-15 124.1 12.2 53 631-683 252-304 (336)
4 3al5_A HTYW5, JMJC domain-cont 98.9 5.7E-10 1.9E-14 118.8 6.2 42 632-673 237-278 (338)
5 2yu1_A JMJC domain-containing 98.9 7.8E-09 2.7E-13 114.6 14.0 52 631-682 262-313 (451)
6 3k3o_A PHF8, PHD finger protei 98.9 9.3E-09 3.2E-13 111.3 13.9 52 631-682 213-264 (371)
7 3kv4_A PHD finger protein 8; e 98.8 4.8E-09 1.6E-13 116.1 9.6 51 632-682 298-348 (447)
8 3kv5_D JMJC domain-containing 98.8 9E-09 3.1E-13 115.1 10.1 51 632-682 333-383 (488)
9 3kv9_A JMJC domain-containing 98.8 2.2E-08 7.6E-13 109.3 12.8 52 631-682 241-292 (397)
10 3d8c_A Hypoxia-inducible facto 98.8 1.7E-09 5.9E-14 115.8 2.7 40 631-670 257-297 (349)
11 3pua_A GRC5, PHD finger protei 98.7 7.9E-08 2.7E-12 104.7 13.1 52 631-682 240-291 (392)
12 3pur_A Lysine-specific demethy 97.5 5.6E-05 1.9E-09 85.0 4.6 51 632-682 363-413 (528)
13 2xxz_A Lysine-specific demethy 97.2 0.00029 1E-08 75.4 6.2 87 569-674 232-318 (332)
14 3avr_A Lysine-specific demethy 97.1 0.00039 1.3E-08 78.5 6.4 89 569-676 291-379 (531)
15 4ask_A Lysine-specific demethy 96.6 0.0019 6.6E-08 72.2 6.0 88 569-675 266-353 (510)
16 3dxt_A JMJC domain-containing 96.3 0.0057 1.9E-07 66.0 6.9 94 572-676 210-303 (354)
17 3opt_A DNA damage-responsive t 95.4 0.02 6.7E-07 62.2 6.8 92 572-675 253-345 (373)
18 2ox0_A JMJC domain-containing 95.3 0.027 9.3E-07 61.4 7.3 95 571-676 227-321 (381)
19 1iym_A EL5; ring-H2 finger, ub 93.2 0.044 1.5E-06 42.2 2.6 32 8-46 21-52 (55)
20 1vrb_A Putative asparaginyl hy 92.9 0.064 2.2E-06 57.2 4.2 57 632-691 215-281 (342)
21 3lrq_A E3 ubiquitin-protein li 92.4 0.03 1E-06 49.2 0.7 34 8-47 35-68 (100)
22 1x4j_A Ring finger protein 38; 92.4 0.046 1.6E-06 45.0 1.7 33 7-46 37-69 (75)
23 3ng2_A RNF4, snurf, ring finge 91.9 0.056 1.9E-06 43.6 1.6 36 6-48 27-62 (71)
24 2ecm_A Ring finger and CHY zin 91.8 0.05 1.7E-06 41.8 1.2 33 7-46 20-52 (55)
25 2opk_A Hypothetical protein; p 91.7 0.052 1.8E-06 48.3 1.3 24 637-660 75-98 (112)
26 2ea6_A Ring finger protein 4; 91.6 0.032 1.1E-06 44.6 -0.1 33 7-46 33-65 (69)
27 2xeu_A Ring finger protein 4; 91.4 0.032 1.1E-06 43.9 -0.3 34 7-47 21-54 (64)
28 1yhf_A Hypothetical protein SP 91.2 0.086 2.9E-06 45.8 2.2 58 608-672 57-114 (115)
29 3lag_A Uncharacterized protein 91.1 0.071 2.4E-06 46.7 1.6 24 637-660 61-84 (98)
30 2pfw_A Cupin 2, conserved barr 91.0 0.07 2.4E-06 46.4 1.5 58 607-672 50-107 (116)
31 3fjs_A Uncharacterized protein 90.8 0.086 2.9E-06 46.8 1.9 58 608-672 53-110 (114)
32 3ht1_A REMF protein; cupin fol 90.8 0.12 3.9E-06 46.6 2.7 41 632-672 76-116 (145)
33 2fc7_A ZZZ3 protein; structure 90.7 0.13 4.4E-06 44.6 2.7 36 121-156 19-59 (82)
34 2q30_A Uncharacterized protein 90.4 0.077 2.6E-06 45.4 1.1 39 631-671 69-108 (110)
35 4ayc_A E3 ubiquitin-protein li 90.3 0.12 4.1E-06 47.7 2.4 29 12-47 69-97 (138)
36 2kiz_A E3 ubiquitin-protein li 90.2 0.1 3.5E-06 42.1 1.6 32 8-46 29-60 (69)
37 3h8u_A Uncharacterized conserv 90.1 0.12 4.3E-06 45.6 2.2 38 635-672 79-116 (125)
38 2djb_A Polycomb group ring fin 90.0 0.059 2E-06 44.1 0.1 32 9-47 29-60 (72)
39 1v70_A Probable antibiotics sy 89.9 0.12 4.1E-06 43.2 1.9 38 634-671 66-103 (105)
40 4e2g_A Cupin 2 conserved barre 89.7 0.24 8.1E-06 43.7 3.7 60 607-673 57-116 (126)
41 2l0b_A E3 ubiquitin-protein li 89.4 0.14 4.7E-06 44.1 2.0 32 8-46 55-86 (91)
42 2fqp_A Hypothetical protein BP 89.3 0.17 5.8E-06 43.3 2.4 25 636-660 60-84 (97)
43 1tot_A CREB-binding protein; z 89.3 0.12 4.1E-06 41.2 1.3 33 123-156 6-39 (52)
44 1juh_A Quercetin 2,3-dioxygena 89.2 0.14 4.7E-06 54.6 2.2 40 636-676 292-332 (350)
45 2b8m_A Hypothetical protein MJ 89.2 0.13 4.4E-06 45.1 1.6 41 633-673 63-106 (117)
46 1chc_A Equine herpes virus-1 r 89.2 0.14 4.7E-06 41.1 1.7 32 9-47 19-50 (68)
47 2ozj_A Cupin 2, conserved barr 89.0 0.13 4.5E-06 44.8 1.6 35 630-664 71-105 (114)
48 2ect_A Ring finger protein 126 88.9 0.19 6.5E-06 41.4 2.4 28 12-46 34-61 (78)
49 2d8t_A Dactylidin, ring finger 88.9 0.12 4.2E-06 42.0 1.2 28 13-47 32-59 (71)
50 3d82_A Cupin 2, conserved barr 88.5 0.2 6.8E-06 42.2 2.3 27 636-662 69-95 (102)
51 1o5u_A Novel thermotoga mariti 88.5 0.14 4.8E-06 45.3 1.4 31 634-664 67-97 (101)
52 2xlg_A SLL1785 protein, CUCA; 88.3 0.27 9.1E-06 50.2 3.5 76 607-685 59-163 (239)
53 2dip_A Zinc finger SWIM domain 88.1 0.16 5.6E-06 45.4 1.6 36 120-155 28-65 (98)
54 2ecy_A TNF receptor-associated 87.9 0.12 4.1E-06 41.5 0.5 29 12-46 31-59 (66)
55 2gu9_A Tetracenomycin polyketi 87.9 0.24 8.4E-06 42.2 2.5 40 633-672 60-99 (113)
56 2y43_A E3 ubiquitin-protein li 87.8 0.17 5.7E-06 43.8 1.4 32 9-47 36-67 (99)
57 3kgz_A Cupin 2 conserved barre 87.8 0.27 9.2E-06 46.6 2.9 41 632-672 79-119 (156)
58 3ibm_A Cupin 2, conserved barr 87.7 0.24 8.2E-06 47.2 2.5 60 607-672 72-132 (167)
59 2csy_A Zinc finger protein 183 87.2 0.095 3.3E-06 43.7 -0.5 30 12-48 31-60 (81)
60 2ozi_A Hypothetical protein RP 87.1 0.19 6.3E-06 44.3 1.3 23 638-660 62-84 (98)
61 2ep4_A Ring finger protein 24; 86.9 0.2 6.8E-06 40.9 1.3 27 13-46 35-61 (74)
62 2e5r_A Dystrobrevin alpha; ZZ 86.8 0.24 8.3E-06 40.8 1.7 34 124-157 12-47 (63)
63 2ckl_B Ubiquitin ligase protei 86.7 0.28 9.7E-06 46.3 2.4 35 8-48 67-101 (165)
64 3h7j_A Bacilysin biosynthesis 86.6 0.21 7.2E-06 50.1 1.5 60 607-672 162-221 (243)
65 2ckl_A Polycomb group ring fin 86.5 0.25 8.6E-06 43.4 1.8 32 9-47 29-60 (108)
66 1v87_A Deltex protein 2; ring- 86.3 0.21 7E-06 44.2 1.1 40 7-48 54-93 (114)
67 1g25_A CDK-activating kinase a 86.2 0.17 5.8E-06 40.4 0.5 30 12-47 24-53 (65)
68 2ecj_A Tripartite motif-contai 86.1 0.24 8.3E-06 38.2 1.3 28 12-43 31-58 (58)
69 1jm7_B BARD1, BRCA1-associated 86.1 0.32 1.1E-05 43.5 2.3 26 13-47 40-65 (117)
70 2egp_A Tripartite motif-contai 85.9 0.12 4.1E-06 42.5 -0.6 36 12-48 28-64 (79)
71 4ap4_A E3 ubiquitin ligase RNF 85.8 0.31 1E-05 43.4 2.0 34 7-47 25-58 (133)
72 2ecl_A Ring-box protein 2; RNF 85.4 0.44 1.5E-05 40.1 2.7 32 8-46 42-73 (81)
73 2i45_A Hypothetical protein; n 85.3 0.38 1.3E-05 41.5 2.3 38 635-675 67-104 (107)
74 1y9q_A Transcriptional regulat 85.2 0.26 9E-06 47.1 1.4 43 630-673 139-181 (192)
75 2yur_A Retinoblastoma-binding 85.0 0.18 6E-06 41.6 0.0 28 13-45 33-60 (74)
76 1lr5_A Auxin binding protein 1 84.7 0.31 1E-05 45.5 1.5 25 635-659 88-112 (163)
77 2ecw_A Tripartite motif-contai 84.3 0.11 3.9E-06 42.8 -1.5 36 12-48 35-70 (85)
78 3cew_A Uncharacterized cupin p 83.7 0.39 1.3E-05 42.5 1.8 29 631-659 62-90 (125)
79 2oa2_A BH2720 protein; 1017534 83.7 0.51 1.7E-05 43.5 2.6 25 636-660 89-113 (148)
80 3jzv_A Uncharacterized protein 83.5 0.41 1.4E-05 45.9 1.8 30 631-660 87-116 (166)
81 3l2h_A Putative sugar phosphat 83.3 0.53 1.8E-05 43.7 2.5 41 632-672 83-124 (162)
82 4ap4_A E3 ubiquitin ligase RNF 83.3 0.36 1.2E-05 43.0 1.3 33 7-46 90-122 (133)
83 4axo_A EUTQ, ethanolamine util 83.2 0.5 1.7E-05 45.2 2.3 60 608-674 80-139 (151)
84 2ysl_A Tripartite motif-contai 82.8 0.39 1.3E-05 38.8 1.2 31 13-47 37-67 (73)
85 3fl2_A E3 ubiquitin-protein li 82.6 0.57 2E-05 42.1 2.4 31 12-48 68-98 (124)
86 1vj2_A Novel manganese-contain 82.6 0.44 1.5E-05 42.6 1.6 47 608-660 65-111 (126)
87 3lwc_A Uncharacterized protein 82.2 0.59 2E-05 42.2 2.3 37 634-672 76-113 (119)
88 2ecv_A Tripartite motif-contai 81.8 0.15 5.1E-06 42.1 -1.7 35 13-48 36-70 (85)
89 2ecn_A Ring finger protein 141 81.7 0.16 5.5E-06 41.0 -1.5 28 12-46 30-57 (70)
90 4i4a_A Similar to unknown prot 81.4 1.6 5.6E-05 38.4 4.9 57 630-690 67-125 (128)
91 2o8q_A Hypothetical protein; c 81.2 0.79 2.7E-05 40.9 2.8 61 607-673 59-120 (134)
92 2ct2_A Tripartite motif protei 81.1 0.43 1.5E-05 39.8 0.9 33 12-48 35-67 (88)
93 1x82_A Glucose-6-phosphate iso 81.1 0.71 2.4E-05 44.9 2.6 40 633-672 117-156 (190)
94 3bcw_A Uncharacterized protein 80.6 0.56 1.9E-05 42.9 1.6 30 637-666 89-118 (123)
95 3l11_A E3 ubiquitin-protein li 80.3 0.51 1.8E-05 41.8 1.2 30 13-48 32-61 (115)
96 3rns_A Cupin 2 conserved barre 80.1 0.64 2.2E-05 46.2 1.9 48 608-661 170-218 (227)
97 1z6u_A NP95-like ring finger p 80.1 0.9 3.1E-05 42.8 2.8 33 12-50 94-126 (150)
98 4h7l_A Uncharacterized protein 79.6 0.33 1.1E-05 46.9 -0.4 47 606-657 60-108 (157)
99 1jm7_A BRCA1, breast cancer ty 79.4 0.46 1.6E-05 41.5 0.6 33 12-48 37-69 (112)
100 2bnm_A Epoxidase; oxidoreducta 79.0 0.76 2.6E-05 43.8 2.0 45 608-658 137-185 (198)
101 1qwr_A Mannose-6-phosphate iso 78.7 0.69 2.3E-05 48.9 1.7 17 639-655 162-178 (319)
102 1zx5_A Mannosephosphate isomer 78.0 0.75 2.5E-05 48.3 1.7 18 638-655 161-178 (300)
103 4ic3_A E3 ubiquitin-protein li 77.9 0.69 2.4E-05 38.2 1.2 25 12-46 40-64 (74)
104 3i7d_A Sugar phosphate isomera 77.7 1.1 3.9E-05 42.2 2.8 59 609-672 62-122 (163)
105 1y3t_A Hypothetical protein YX 77.7 0.87 3E-05 46.8 2.1 50 630-680 252-301 (337)
106 1fi2_A Oxalate oxidase, germin 77.6 1.3 4.5E-05 43.1 3.3 39 635-673 119-157 (201)
107 1t1h_A Gspef-atpub14, armadill 76.4 0.64 2.2E-05 38.2 0.6 29 13-47 25-53 (78)
108 2f4p_A Hypothetical protein TM 76.3 1.3 4.4E-05 41.0 2.7 35 637-671 89-123 (147)
109 1bor_A Transcription factor PM 76.2 0.67 2.3E-05 36.3 0.6 26 12-47 22-47 (56)
110 3ztg_A E3 ubiquitin-protein li 76.0 0.65 2.2E-05 39.4 0.5 30 13-47 31-60 (92)
111 3dpl_R Ring-box protein 1; ubi 75.9 0.79 2.7E-05 41.1 1.0 32 8-46 67-98 (106)
112 1o4t_A Putative oxalate decarb 75.8 0.96 3.3E-05 40.9 1.6 31 630-660 91-121 (133)
113 3rns_A Cupin 2 conserved barre 74.1 1.1 3.7E-05 44.5 1.6 56 605-666 51-106 (227)
114 3hct_A TNF receptor-associated 74.0 0.5 1.7E-05 42.3 -0.8 29 12-46 34-62 (118)
115 1rc6_A Hypothetical protein YL 73.6 1 3.5E-05 45.5 1.3 48 608-660 196-243 (261)
116 2wfp_A Mannose-6-phosphate iso 73.2 1.2 4E-05 48.6 1.7 15 640-654 245-259 (394)
117 1dgw_A Canavalin; duplicated s 72.8 1.2 4.1E-05 42.8 1.5 27 634-660 82-108 (178)
118 2pyt_A Ethanolamine utilizatio 72.6 1.7 5.7E-05 40.1 2.3 35 632-666 90-124 (133)
119 1rmd_A RAG1; V(D)J recombinati 72.5 0.64 2.2E-05 41.2 -0.4 30 12-47 39-68 (116)
120 2vqa_A SLL1358 protein, MNCA; 72.2 1.1 3.9E-05 46.9 1.3 55 636-691 279-333 (361)
121 1pmi_A PMI, phosphomannose iso 71.2 1.4 4.7E-05 48.8 1.7 16 639-654 270-285 (440)
122 3h7j_A Bacilysin biosynthesis 70.8 1.5 5.1E-05 43.8 1.7 48 607-660 50-98 (243)
123 1sef_A Conserved hypothetical 70.7 1.5 5E-05 44.8 1.7 31 630-660 216-246 (274)
124 1y3t_A Hypothetical protein YX 70.6 1.6 5.4E-05 44.9 1.9 48 630-678 80-127 (337)
125 1wgm_A Ubiquitin conjugation f 69.8 1.6 5.6E-05 38.3 1.6 29 12-46 38-66 (98)
126 4e2q_A Ureidoglycine aminohydr 69.5 1.6 5.3E-05 45.4 1.6 29 630-658 220-248 (266)
127 2vpv_A Protein MIF2, MIF2P; nu 69.4 2.3 7.9E-05 41.2 2.7 29 632-660 125-153 (166)
128 4a0k_B E3 ubiquitin-protein li 69.3 0.97 3.3E-05 41.5 0.0 28 12-46 82-109 (117)
129 1juh_A Quercetin 2,3-dioxygena 69.0 1.6 5.4E-05 46.4 1.5 69 607-681 66-139 (350)
130 4diq_A Lysine-specific demethy 68.8 2.6 8.9E-05 47.4 3.3 42 630-671 223-266 (489)
131 2ysj_A Tripartite motif-contai 68.4 0.48 1.7E-05 37.4 -2.0 27 13-43 37-63 (63)
132 2xdv_A MYC-induced nuclear ant 68.0 2.7 9.1E-05 46.5 3.1 30 630-659 194-223 (442)
133 1j58_A YVRK protein; cupin, de 66.8 1.8 6E-05 46.0 1.4 27 634-660 300-326 (385)
134 2d40_A Z3393, putative gentisa 66.5 2.5 8.4E-05 45.2 2.4 40 632-671 136-175 (354)
135 3knv_A TNF receptor-associated 66.4 0.77 2.6E-05 42.9 -1.3 30 12-47 47-76 (141)
136 2ecg_A Baculoviral IAP repeat- 65.4 2.2 7.6E-05 35.1 1.5 25 12-46 41-65 (75)
137 1e4u_A Transcriptional repress 65.3 1.9 6.4E-05 36.5 1.0 30 13-48 32-61 (78)
138 1sq4_A GLXB, glyoxylate-induce 65.2 2.1 7.2E-05 44.0 1.5 31 630-660 103-133 (278)
139 3nw4_A Gentisate 1,2-dioxygena 64.0 3.2 0.00011 45.1 2.7 28 632-659 139-166 (368)
140 3bu7_A Gentisate 1,2-dioxygena 63.6 3.1 0.00011 45.4 2.6 29 631-659 328-356 (394)
141 1sfn_A Conserved hypothetical 62.8 2.6 8.9E-05 42.4 1.7 32 629-660 198-229 (246)
142 1zrr_A E-2/E-2' protein; nicke 61.0 5.2 0.00018 39.1 3.3 59 608-672 97-159 (179)
143 1sfn_A Conserved hypothetical 58.8 3.2 0.00011 41.7 1.5 31 631-661 82-112 (246)
144 2kre_A Ubiquitin conjugation f 58.7 2.8 9.6E-05 36.9 0.9 28 12-46 45-72 (100)
145 2ct7_A Ring finger protein 31; 58.2 5.5 0.00019 34.1 2.7 39 115-153 16-59 (86)
146 2yho_A E3 ubiquitin-protein li 57.4 3.5 0.00012 34.6 1.3 26 12-47 34-59 (79)
147 2vqa_A SLL1358 protein, MNCA; 57.2 2.7 9.2E-05 44.0 0.6 25 635-659 96-120 (361)
148 2d5f_A Glycinin A3B4 subunit; 56.9 4 0.00014 45.8 2.0 31 640-670 118-148 (493)
149 2ct0_A Non-SMC element 1 homol 56.9 5.1 0.00018 33.9 2.2 34 9-47 29-62 (74)
150 4b29_A Dimethylsulfoniopropion 56.8 3.6 0.00012 41.7 1.4 46 608-659 149-195 (217)
151 3es1_A Cupin 2, conserved barr 56.0 4.4 0.00015 39.4 1.9 35 636-671 119-153 (172)
152 3hcs_A TNF receptor-associated 55.2 2 6.7E-05 40.6 -0.7 29 12-46 34-62 (170)
153 4e2q_A Ureidoglycine aminohydr 54.2 4.1 0.00014 42.3 1.4 24 636-659 110-133 (266)
154 2e9q_A 11S globulin subunit be 54.1 4.2 0.00014 45.2 1.6 34 639-672 131-164 (459)
155 1vr3_A Acireductone dioxygenas 53.6 7.3 0.00025 38.6 3.0 38 636-673 128-165 (191)
156 1sef_A Conserved hypothetical 53.0 4.7 0.00016 41.0 1.6 31 630-660 97-127 (274)
157 1rc6_A Hypothetical protein YL 52.9 6.1 0.00021 39.7 2.4 30 631-660 95-124 (261)
158 1sq4_A GLXB, glyoxylate-induce 52.8 4.3 0.00015 41.8 1.3 32 629-660 224-255 (278)
159 3vk6_A E3 ubiquitin-protein li 52.2 2.6 8.8E-05 38.1 -0.4 34 4-46 13-46 (101)
160 2kr4_A Ubiquitin conjugation f 51.6 2.7 9.2E-05 35.8 -0.4 28 12-46 30-57 (85)
161 2d40_A Z3393, putative gentisa 50.4 7.3 0.00025 41.5 2.7 27 632-658 303-329 (354)
162 3c3v_A Arachin ARAH3 isoform; 49.5 5.9 0.0002 44.7 1.8 34 640-673 131-164 (510)
163 3bu7_A Gentisate 1,2-dioxygena 48.4 7.9 0.00027 42.3 2.6 27 631-657 158-184 (394)
164 2arc_A ARAC, arabinose operon 47.5 9.4 0.00032 34.3 2.6 30 630-659 51-80 (164)
165 1fxz_A Glycinin G1; proglycini 47.3 6.7 0.00023 43.8 1.8 29 637-665 115-143 (476)
166 3cjx_A Protein of unknown func 45.5 8.6 0.0003 36.9 2.1 33 640-672 85-126 (165)
167 2c2l_A CHIP, carboxy terminus 45.0 6.3 0.00022 39.2 1.1 30 12-47 224-253 (281)
168 2c6a_A Ubiquitin-protein ligas 44.5 6.9 0.00024 30.6 0.9 24 8-31 13-44 (46)
169 2y0o_A Probable D-lyxose ketol 44.2 8.6 0.00029 37.6 1.8 41 634-676 117-158 (175)
170 2cr8_A MDM4 protein; ZF-ranbp 43.1 10 0.00034 30.4 1.7 27 6-32 9-43 (53)
171 2cav_A Protein (canavalin); vi 42.8 8 0.00027 42.7 1.5 25 635-659 128-152 (445)
172 1vq8_T 50S ribosomal protein L 42.3 6.6 0.00023 36.4 0.7 42 608-651 14-55 (120)
173 2vje_A E3 ubiquitin-protein li 41.8 6.2 0.00021 31.7 0.4 29 12-46 26-54 (64)
174 2kwj_A Zinc finger protein DPF 41.5 23 0.00079 31.8 4.1 45 4-54 19-66 (114)
175 3fyb_A Protein of unknown func 40.5 8.4 0.00029 34.7 1.0 12 18-29 41-52 (104)
176 3j21_U 50S ribosomal protein L 40.2 8 0.00027 35.9 0.8 40 609-650 18-57 (121)
177 1fxz_A Glycinin G1; proglycini 39.5 12 0.00039 41.9 2.1 85 605-691 352-440 (476)
178 2lbm_A Transcriptional regulat 38.6 33 0.0011 32.5 4.8 37 4-44 71-115 (142)
179 2d8s_A Cellular modulator of i 37.9 12 0.00042 31.7 1.6 27 16-46 41-67 (80)
180 1uij_A Beta subunit of beta co 36.8 13 0.00044 40.7 2.0 46 608-658 65-114 (416)
181 1v5n_A PDI-like hypothetical p 35.9 13 0.00044 32.3 1.4 31 123-153 47-77 (89)
182 3c3v_A Arachin ARAH3 isoform; 34.3 16 0.00053 41.3 2.1 102 568-671 351-453 (510)
183 2ct7_A Ring finger protein 31; 32.0 19 0.00065 30.7 1.9 30 8-38 43-75 (86)
184 2ea7_A 7S globulin-1; beta bar 31.9 18 0.00063 39.7 2.2 26 634-659 102-127 (434)
185 2o1q_A Putative acetyl/propion 31.9 16 0.00053 33.9 1.4 55 605-665 58-115 (145)
186 1j58_A YVRK protein; cupin, de 31.2 22 0.00074 37.6 2.5 48 607-660 95-147 (385)
187 3a1b_A DNA (cytosine-5)-methyl 31.2 34 0.0011 33.1 3.6 46 4-55 87-134 (159)
188 2d5f_A Glycinin A3B4 subunit; 31.2 12 0.0004 42.0 0.5 121 568-692 346-467 (493)
189 3htk_C E3 SUMO-protein ligase 30.2 18 0.00061 37.7 1.6 34 9-47 195-230 (267)
190 2o35_A Hypothetical protein DU 30.0 12 0.0004 33.8 0.2 13 18-30 42-54 (105)
191 2yw8_A RUN and FYVE domain-con 29.0 30 0.001 29.3 2.6 36 119-154 15-52 (82)
192 3avr_A Lysine-specific demethy 28.9 44 0.0015 37.9 4.6 36 120-155 455-495 (531)
193 2vje_B MDM4 protein; proto-onc 28.3 13 0.00043 29.8 0.1 29 12-46 25-53 (63)
194 2jmo_A Parkin; IBR, E3 ligase, 28.3 37 0.0013 28.6 3.0 34 121-154 23-67 (80)
195 1zbd_B Rabphilin-3A; G protein 28.3 32 0.0011 32.1 2.9 73 81-157 17-92 (134)
196 1z2q_A LM5-1; membrane protein 27.7 43 0.0015 28.5 3.4 36 118-154 16-54 (84)
197 3kgl_A Cruciferin; 11S SEED gl 26.4 23 0.00077 39.6 1.7 22 640-661 150-171 (466)
198 3nw4_A Gentisate 1,2-dioxygena 26.0 33 0.0011 37.2 2.8 30 633-662 315-344 (368)
199 3qac_A 11S globulin SEED stora 25.6 27 0.00094 38.9 2.2 34 640-673 135-168 (465)
200 1wim_A KIAA0161 protein; ring 24.7 7.3 0.00025 33.2 -2.1 36 9-45 21-60 (94)
201 2vrw_B P95VAV, VAV1, proto-onc 24.3 39 0.0013 35.9 3.0 37 120-156 354-393 (406)
202 1x4u_A Zinc finger, FYVE domai 24.1 37 0.0013 28.8 2.3 36 119-154 10-47 (84)
203 3j20_Y 30S ribosomal protein S 23.6 35 0.0012 26.8 1.8 25 122-146 18-46 (50)
204 2zet_C Melanophilin; complex, 23.6 19 0.00067 34.4 0.4 35 122-156 67-104 (153)
205 2ea5_A Cell growth regulator w 23.5 34 0.0012 27.7 1.8 25 12-46 31-55 (68)
206 3zyq_A Hepatocyte growth facto 22.9 1.7E+02 0.006 29.0 7.3 61 94-154 129-197 (226)
207 3ql9_A Transcriptional regulat 22.2 28 0.00097 32.5 1.2 40 4-44 65-109 (129)
208 2hqh_E Restin; beta/BETA struc 21.4 25 0.00085 24.5 0.5 9 122-130 2-10 (26)
209 2pv0_B DNA (cytosine-5)-methyl 20.3 61 0.0021 35.4 3.5 45 5-55 102-148 (386)
210 2pzo_E CAP-Gly domain-containi 20.2 27 0.00091 26.8 0.5 12 120-131 17-28 (42)
211 2zkr_t 60S ribosomal protein L 20.1 14 0.00047 35.3 -1.4 42 608-651 20-61 (145)
No 1
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-131 Score=1057.86 Aligned_cols=352 Identities=32% Similarity=0.546 Sum_probs=272.7
Q ss_pred CCcCchhhHHHHHHHhhcCCCEEEEccccccCCCCCChhHHHHHHhhhccccccccCCceeEeecCCCceeecchhhhhc
Q 004844 290 TKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFK 369 (728)
Q Consensus 290 ~d~~~~~~l~~FQ~hW~kGePVIVr~vl~~~s~lsW~P~~mwra~~e~~~~~~~~~~~~vkaidCl~~~ev~i~~~~Ff~ 369 (728)
.|..+.+|+.|||+||++|||||||||++++++++|+|++||++|++. .+++|||++|++++|++++||+
T Consensus 16 ~d~~~~~n~~~Fq~hW~~GePViVs~V~~~~~~~~W~Pe~~~~~~gd~----------~~~lidC~~~~~~~i~v~~Ff~ 85 (392)
T 2ypd_A 16 KDYKNSSNWKLFKECWKQGQPAVVSGVHKKMNISLWKAESISLDFGDH----------QADLLNCKDSIISNANVKEFWD 85 (392)
T ss_dssp CCTTCTTHHHHHHHHHTTTCCEEECCHHHHSCGGGGSHHHHHHHHTTS----------CCCCEETTTCCBCSCCHHHHHH
T ss_pred cCCCCcccHHHHHHHHhCCCcEEEechhhhCcCCccCHHHHHHHhcCc----------eeeeeeCCCCccccCcHHHHhh
Confidence 455556899999999999999999999999999999999999998642 3678999999999999999999
Q ss_pred cccCCcc---CCCCccceeecCCCCCCCchhhhcccchHHHHhCCCCcCcCCCCCccccccccCCCCCCCCCCCcchhhc
Q 004844 370 GYTQGRT---YDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIA 446 (728)
Q Consensus 370 Gy~~gr~---~~~~wp~mLKLKDWPps~~F~e~lP~h~~efi~~LP~~eYt~pr~G~LNLAskLP~~~lkPDLGPK~YIA 446 (728)
||++++. ++++||+|||||||||+++|+++||+||+|||++|||||||||+ |+|||||+||+++++||||||||||
T Consensus 86 Gf~~~~~r~~~~~g~p~~LKLKDWPp~~~F~e~lP~~~~df~~~LPlpEYt~p~-G~LNLAs~LP~~~~kPDLGPK~YiA 164 (392)
T 2ypd_A 86 GFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNPE-GKFNLASHLPGFFVRPDLGPRLCSA 164 (392)
T ss_dssp TSSBGGGC------CCCCEEECSSSBTHHHHHHSHHHHHHHHHHCSSHHHHSTT-CTTCCTTTSCGGGCC---CCEEEEE
T ss_pred hccccccCCcCCCCCcceeeecCCCChHHHHHHhHHHHHHHHHcCCchHhhCCC-ccchHHHhCCCCCCCCCCCcchhhh
Confidence 9998753 57999999999999999999999999999999999999999985 9999999999999999999999999
Q ss_pred cccccccCCCCCcccccccccchhhhhhcccccccchhhHHHHHHHHHHHHhhhhhhhhccCCCcccccCCCCCCCCCCC
Q 004844 447 YGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDT 526 (728)
Q Consensus 447 YG~~eelgrgdSvTkLH~DmSDAVNIL~htaev~~~~~~~~~i~~l~~~~~~q~~~e~~~~~~~~~~~~~~~~~~~~~d~ 526 (728)
||+++++|+|+|||||||||||||||||||++++... ..... ...+++.+++..+.+
T Consensus 165 YG~~~~~~~~~gvT~LH~DmsDaVNiL~h~~~~~~~~-~~~~~-~~l~~~~~~~~d~~~--------------------- 221 (392)
T 2ypd_A 165 YGVVAAKDHDIGTTNLHIEVSDVVNILVYVGIAKGNG-ILSKA-GILKKFEEEDLDDIL--------------------- 221 (392)
T ss_dssp CCSTTTTCTTCCSEEEEECSSEEEEEEEEEECCBCTT-CCCHH-HHHHHHHTSCCCHHH---------------------
T ss_pred cCcchhcccCCCcceeeeehhhhhhhhheecccCccc-cchhh-hhhhhhhhccccHHH---------------------
Confidence 9999999999999999999999999999998654222 11111 111222211110000
Q ss_pred ccccccccCCCCCCcccccccccccccCCccccCCCCCCccCCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCc
Q 004844 527 DVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQ 606 (728)
Q Consensus 527 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWdIFrreDv~KLreyL~kh~~Ef~h~~~~p~~~ 606 (728)
. .++.+ ..+.+||+||||||||++|||+||++|++||. .++.+
T Consensus 222 -~----------------~r~~~----------------~~~~~GAlW~Ifr~~D~~klr~~L~~~~~e~~----~~~~~ 264 (392)
T 2ypd_A 222 -R----------------KRLKD----------------SSEIPGALWHIYAGKDVDKIREFLQKISKEQG----LEVLP 264 (392)
T ss_dssp -H----------------HHHTC----------------TTCCEEEEEEEECGGGHHHHHHHHHHHHHHHC---------
T ss_pred -h----------------hhccC----------------CCCCCCceeeeeCHhhHHHHHHHHHHHHHhhC----CCccC
Confidence 0 00000 13578999999999999999999999999984 46788
Q ss_pred ccCCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccccccccccCCccHHHHHHHHHHhhc
Q 004844 607 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRL 686 (728)
Q Consensus 607 v~dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLteEfR~ 686 (728)
+.||||||+||||++||++|+|||||+||||+|++|||||||||||||||||+||||||+||||||||++|++||+|||+
T Consensus 265 ~~dPihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV~Nl~~~i~va~df~spe~~~~c~~lt~E~R~ 344 (392)
T 2ypd_A 265 EHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELRL 344 (392)
T ss_dssp -CCHHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEEEESSEEEEEEEEECCGGGHHHHHHHHHHC--
T ss_pred CCCcCcCCCEEecHHHHHHHHHhcCCeeEEEEEcCCCEEEecCCCHHHHhcccchhhHhhhhcChhhHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccchhhhhheeeeehhhhhc
Q 004844 687 LPKNHRAREDKLEVYLVFIKRKCYVHE 713 (728)
Q Consensus 687 Lp~~H~~keDkLevkkm~l~~~~~~~~ 713 (728)
|| +|++||||||||||+||++..+..
T Consensus 345 l~-~~~~~edkLqvk~m~~~av~~av~ 370 (392)
T 2ypd_A 345 LK-EEINYDDKLQVKNILYHAVKEMVR 370 (392)
T ss_dssp ---------------------------
T ss_pred cc-hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 96 699999999999999998665543
No 2
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=99.22 E-value=5.6e-12 Score=124.01 Aligned_cols=35 Identities=29% Similarity=0.284 Sum_probs=31.9
Q ss_pred ccceEEEeecCceeEecCCCccccccccccccccc
Q 004844 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 666 (728)
Q Consensus 632 VepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAl 666 (728)
+.++.++|.+||++|||+|..|||+||..||.|..
T Consensus 198 ~~~~~~~l~pGD~LyiP~gW~H~V~~l~~sisvn~ 232 (235)
T 4gjz_A 198 APFLSCILSPGEILFIPVKYWHYVRALDLSFSVSF 232 (235)
T ss_dssp CCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEE
T ss_pred CCcEEEEECCCCEEEeCCCCcEEEEECCCEEEEEE
Confidence 57899999999999999999999999999887753
No 3
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*
Probab=99.15 E-value=1.4e-10 Score=124.12 Aligned_cols=53 Identities=32% Similarity=0.444 Sum_probs=50.4
Q ss_pred CccceEEEeecCceeEecCCCccccccccccccccccccCCccHHHHHHHHHH
Q 004844 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKE 683 (728)
Q Consensus 631 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLteE 683 (728)
+..++.++|.+||++|||+|..|||+||..||.|+..|++|.|+...+++|-+
T Consensus 252 ~~~~~~~~l~pGd~l~iP~gw~H~v~~~~~sisv~~~f~~~~nl~~~~~~~~~ 304 (336)
T 3k2o_A 252 EFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVR 304 (336)
T ss_dssp GGCCEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECCTTTHHHHHHHHHH
T ss_pred cCceEEEEECCCCEEEeCCCCcEEEecCCCeEEEEcccCCcccHHHHHHHHHh
Confidence 46889999999999999999999999999999999999999999999999964
No 4
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*
Probab=98.94 E-value=5.7e-10 Score=118.84 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=39.5
Q ss_pred ccceEEEeecCceeEecCCCccccccccccccccccccCCcc
Q 004844 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 673 (728)
Q Consensus 632 VepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEn 673 (728)
+.++.+++.+||++|||+|..|||+||..||.|..-|.++..
T Consensus 237 ~~~~~~~L~pGD~LyiP~gWwH~v~~l~~sisvn~~~~~~~~ 278 (338)
T 3al5_A 237 ARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNIFWKHLPS 278 (338)
T ss_dssp CCEEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECSSCG
T ss_pred CCCEEEEECCCCEEEECCCCeEEEeeCCCEEEEEEEecCCcc
Confidence 579999999999999999999999999999999999988764
No 5
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A
Probab=98.91 E-value=7.8e-09 Score=114.55 Aligned_cols=52 Identities=21% Similarity=0.225 Sum_probs=49.0
Q ss_pred CccceEEEeecCceeEecCCCccccccccccccccccccCCccHHHHHHHHH
Q 004844 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 682 (728)
Q Consensus 631 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLte 682 (728)
..+++.++|..||++|||+|.-|||.||..||-|+..|++.-|+..-+++++
T Consensus 262 ~~~~~~v~l~pGE~LfIPsGWwH~V~nledsIait~NF~~~~nl~~~l~~~~ 313 (451)
T 2yu1_A 262 VSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYN 313 (451)
T ss_dssp SSCCEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCSSSHHHHHHHHH
T ss_pred cccceEEEECCCcEEEeCCCceEEEecCCCeEEEeeeeCCcccHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999988875
No 6
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=98.90 E-value=9.3e-09 Score=111.33 Aligned_cols=52 Identities=23% Similarity=0.373 Sum_probs=49.6
Q ss_pred CccceEEEeecCceeEecCCCccccccccccccccccccCCccHHHHHHHHH
Q 004844 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 682 (728)
Q Consensus 631 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLte 682 (728)
..+++.++|..||++|||+|..|||.||.+||-|+..|++..|+...++..+
T Consensus 213 ~~~~~ev~l~pGEtLfIPsGWwH~V~nledSIai~~NFl~~~nl~~~l~~~~ 264 (371)
T 3k3o_A 213 VDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYE 264 (371)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHH
T ss_pred cCceEEEEECCCcEEEeCCCCeEEEecCCCeEEECCcccchhhHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999876
No 7
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=98.85 E-value=4.8e-09 Score=116.13 Aligned_cols=51 Identities=24% Similarity=0.402 Sum_probs=49.3
Q ss_pred ccceEEEeecCceeEecCCCccccccccccccccccccCCccHHHHHHHHH
Q 004844 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 682 (728)
Q Consensus 632 VepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLte 682 (728)
.+++.++|..||++|||+|..|||.||.+||-|+..|++..|+..-++..+
T Consensus 298 ~~~~~v~l~pGetlfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~ 348 (447)
T 3kv4_A 298 DKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYE 348 (447)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEESSCEEEEEEEECCSTTHHHHHHHHH
T ss_pred cceEEEEECCCcEEecCCCCeEEEecCCCEEEEccccccccCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999887
No 8
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=98.80 E-value=9e-09 Score=115.09 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=48.3
Q ss_pred ccceEEEeecCceeEecCCCccccccccccccccccccCCccHHHHHHHHH
Q 004844 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 682 (728)
Q Consensus 632 VepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLte 682 (728)
.+++.++|.+||++|||+|..|||.||..||-|...|++..|+...++..+
T Consensus 333 ~~~~~~~l~pGe~lfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~ 383 (488)
T 3kv5_D 333 DKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYE 383 (488)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHH
T ss_pred cceEEEeeCCCCEEEeCCCceEEeeCCCCeEEEccccCCccCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999888654
No 9
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=98.80 E-value=2.2e-08 Score=109.27 Aligned_cols=52 Identities=23% Similarity=0.358 Sum_probs=48.4
Q ss_pred CccceEEEeecCceeEecCCCccccccccccccccccccCCccHHHHHHHHH
Q 004844 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 682 (728)
Q Consensus 631 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLte 682 (728)
..+++.++|.+||++|||+|..|||.||..+|-|...|+++.|+...++..+
T Consensus 241 ~~~~~~v~l~pGe~lfIPsGW~H~V~nledSIai~~NFl~~~nl~~~l~~~~ 292 (397)
T 3kv9_A 241 VDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYE 292 (397)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHH
T ss_pred cCceEEEEECCCCEEEeCCCCeEEccCCcCeEEECCcccCchhHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999998887654
No 10
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...
Probab=98.77 E-value=1.7e-09 Score=115.79 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=36.2
Q ss_pred CccceEEEeecCceeEecCCCcccccccc-ccccccccccC
Q 004844 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLK-SCTKVAVDFVS 670 (728)
Q Consensus 631 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~-SCIKVAlDFVS 670 (728)
.+.++.+++.+||++|||+|..|||+||. .++.|++.|..
T Consensus 257 ~~~~~~~~l~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w~ 297 (349)
T 3d8c_A 257 NVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 297 (349)
T ss_dssp GCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEEEE
T ss_pred cCCcEEEEECCCCEEEECCCCcEEEEEcCCCCcEEEEEEEc
Confidence 35799999999999999999999999998 58888888865
No 11
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*
Probab=98.70 E-value=7.9e-08 Score=104.75 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=49.6
Q ss_pred CccceEEEeecCceeEecCCCccccccccccccccccccCCccHHHHHHHHH
Q 004844 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 682 (728)
Q Consensus 631 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLte 682 (728)
..+++.++|..||++|||+|..|||.|+.+||-|...|++..|+..-++..+
T Consensus 240 ~~~~~ev~l~pGEtlfIPsGWwH~V~nledSIai~gNFl~~~nl~~~l~~~~ 291 (392)
T 3pua_A 240 VDKCYKCIVKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAYE 291 (392)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCTTCHHHHHHHHH
T ss_pred ccceEEEEECCCcEEeeCCCceEEEecCCCEEEEcCcccChhhHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999998887
No 12
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=97.49 E-value=5.6e-05 Score=85.00 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=46.9
Q ss_pred ccceEEEeecCceeEecCCCccccccccccccccccccCCccHHHHHHHHH
Q 004844 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 682 (728)
Q Consensus 632 VepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLte 682 (728)
.....++|..||++|||||..|+|.|+.+||-|...|++..|+..-+++++
T Consensus 363 ~~~~~v~l~pGEtlfIPsGW~HaV~tleDSIaiggNFl~~~nl~~qlri~~ 413 (528)
T 3pur_A 363 GAVKRVVIKEGQTLLIPAGWIHAVLTPVDSLVFGGNFLHLGNLEMQMRVYH 413 (528)
T ss_dssp TCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCGGGHHHHHHHHH
T ss_pred ccEEEEEECCCCEEEecCCceEEEecCCCeEEEcCcccchhhHHHHHHHHH
Confidence 345689999999999999999999999999999999999999999888664
No 13
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}
Probab=97.24 E-value=0.00029 Score=75.40 Aligned_cols=87 Identities=18% Similarity=0.290 Sum_probs=71.6
Q ss_pred CCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEec
Q 004844 569 SGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIP 648 (728)
Q Consensus 569 ~~GAlWdIFrreDv~KLreyL~kh~~Ef~h~~~~p~~~v~dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIP 648 (728)
.+--+|=.=..+.+.|++++++++. .|. +.+.++++.+- |+ +.||.=+.|+|++||.|+|+
T Consensus 232 p~~~~Wy~VP~e~~~~~e~l~~k~~--------------~d~-~~~~~~~~p~~---L~-~~gIPvyr~~QkpGd~Vi~~ 292 (332)
T 2xxz_A 232 PGDCEWFAVHEHYWETISAFCDRHG--------------VDY-LTGSWWPILDD---LY-ASNIPVYRFVQRPGDLVWIN 292 (332)
T ss_dssp ESCEEEEEECGGGHHHHHHHHHHTT--------------CCT-TTSCBCCCHHH---HH-HTTCCCEEEEECTTCEEEEC
T ss_pred CCceEEEEECHHHHHHHHHHHHhcC--------------Cch-hhceecCCHHH---HH-hCCCCeEEEEECCCCEEEEC
Confidence 3556899999999999999998632 122 34567776643 33 35999999999999999999
Q ss_pred CCCccccccccccccccccccCCccH
Q 004844 649 AGCPHQVRNLKSCTKVAVDFVSPENV 674 (728)
Q Consensus 649 AGcPHQVrNL~SCIKVAlDFVSPEnV 674 (728)
+||-|||.|.=-|+++|..|..|...
T Consensus 293 PgayH~v~n~G~~~n~awN~a~~~~~ 318 (332)
T 2xxz_A 293 AGTVHWVQATGWCNNIAWNVGPLTAY 318 (332)
T ss_dssp TTCEEEEEESSSEEEEEEEEESCTTG
T ss_pred CCceEEEEecceeeEEEEEeCCCcHH
Confidence 99999999999999999999999765
No 14
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=97.15 E-value=0.00039 Score=78.47 Aligned_cols=89 Identities=21% Similarity=0.293 Sum_probs=73.5
Q ss_pred CCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEec
Q 004844 569 SGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIP 648 (728)
Q Consensus 569 ~~GAlWdIFrreDv~KLreyL~kh~~Ef~h~~~~p~~~v~dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIP 648 (728)
.+-.+|=.=..++..|++++++++- .|. +...++++.+. |+ +.||.=+.|+|++||.|+++
T Consensus 291 gg~~~Wy~VP~e~~~k~e~l~~k~~--------------~~~-~~~~~~~~p~~---L~-~~gIPvyr~vQkpGd~Vi~~ 351 (531)
T 3avr_A 291 PGDCEWFVVPEGYWGVLNDFCEKNN--------------LNF-LMGSWWPNLED---LY-EANVPVYRFIQRPGDLVWIN 351 (531)
T ss_dssp ESCEEEEEECGGGHHHHHHHHHHTT--------------CCT-TTSCBCCCHHH---HH-HTTCCCEEEEECTTCEEEEC
T ss_pred CCCeEEEEeCHHHHHHHHHHHHHcC--------------CCh-hhceeecCHHH---HH-hCCCCeEEEEECCCCEEEEC
Confidence 4456899999999999999998651 233 34567776543 33 35999999999999999999
Q ss_pred CCCccccccccccccccccccCCccHHH
Q 004844 649 AGCPHQVRNLKSCTKVAVDFVSPENVDE 676 (728)
Q Consensus 649 AGcPHQVrNL~SCIKVAlDFVSPEnV~e 676 (728)
+||.|||.|+=-|+++|..|..|.-..-
T Consensus 352 PgayH~v~n~G~~~n~awN~a~~~~~q~ 379 (531)
T 3avr_A 352 AGTVHWVQAIGWCNNIAWNVGPLTACQY 379 (531)
T ss_dssp TTCEEEEEESSSEEEEEEEECCSSHHHH
T ss_pred CCceEEEEecceeeeeEEEeccCchHHH
Confidence 9999999999999999999999996653
No 15
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*
Probab=96.59 E-value=0.0019 Score=72.24 Aligned_cols=88 Identities=18% Similarity=0.272 Sum_probs=71.7
Q ss_pred CCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEec
Q 004844 569 SGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIP 648 (728)
Q Consensus 569 ~~GAlWdIFrreDv~KLreyL~kh~~Ef~h~~~~p~~~v~dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIP 648 (728)
.+--+|=.=..+...+++++++++.. |. +.+.++.+.+. |+ +.||.=+.|+|++||.|+++
T Consensus 266 gg~c~WY~VP~e~~~k~e~l~~k~~~--------------d~-l~~~~~pspe~---L~-kagIPvyr~iQkPGdfVit~ 326 (510)
T 4ask_A 266 PGDCEWFAVHEHYWETISAFCDRHGV--------------DY-LTGSWWPILDD---LY-ASNIPVYRFVQRPGDLVWIN 326 (510)
T ss_dssp ESCEEEEEECGGGHHHHHHHHHHTTC--------------CT-TTSCBCCCHHH---HH-HTTCCCEEEEECTTCEEEEC
T ss_pred CCceeEEEECHHHHHHHHHHHHHhCc--------------ch-hhccccCCHHH---HH-hCCCCeEEEEECCCCEEEEC
Confidence 45569999999999999999986421 22 33567776653 33 47999999999999999999
Q ss_pred CCCccccccccccccccccccCCccHH
Q 004844 649 AGCPHQVRNLKSCTKVAVDFVSPENVD 675 (728)
Q Consensus 649 AGcPHQVrNL~SCIKVAlDFVSPEnV~ 675 (728)
+|+.|+|.|.==|+++|-.|.-|-...
T Consensus 327 PgtyH~Vqs~Gf~~niaWNvap~t~~q 353 (510)
T 4ask_A 327 AGTVHWVQATGWCNNIAWNVGPLTAYQ 353 (510)
T ss_dssp TTCEEEEEESSSEEEEEEEECBSSHHH
T ss_pred CCceEEEEecCeeeeeEEEecCCCHHH
Confidence 999999999999999999999886443
No 16
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=96.25 E-value=0.0057 Score=66.01 Aligned_cols=94 Identities=21% Similarity=0.215 Sum_probs=78.7
Q ss_pred eEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEecCCC
Q 004844 572 ALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGC 651 (728)
Q Consensus 572 AlWdIFrreDv~KLreyL~kh~~Ef~h~~~~p~~~v~dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGc 651 (728)
-+|=.-.+++..|+++++++.+.+.- ..|. +=+|...+.++++. |+ +.||.-.+++|++||.|++-.|+
T Consensus 210 K~WY~VP~~~~~kfE~l~k~~~p~~~-~~c~------~fL~h~~~lisP~~---L~-~~GIpv~~~vQ~pGEfViTfP~a 278 (354)
T 3dxt_A 210 KTWYVVPPEHGQRLERLARELFPGSS-RGCG------AFLRHKVALISPTV---LK-ENGIPFNRITQEAGEFMVTFPYG 278 (354)
T ss_dssp EEEEEECGGGHHHHHHHHHHHSHHHH-HHCT------TGGGGCCEEECHHH---HH-HTTCCCEEEEECTTCEEEECTTC
T ss_pred eEEEEeCHHHHHHHHHHHHHhCchhh-hhcH------HHHhcCcccCCHHH---HH-HCCCceEEEEeCCCcEEEECCCc
Confidence 49999999999999999998865421 1232 22566788899873 44 47999999999999999999999
Q ss_pred ccccccccccccccccccCCccHHH
Q 004844 652 PHQVRNLKSCTKVAVDFVSPENVDE 676 (728)
Q Consensus 652 PHQVrNL~SCIKVAlDFVSPEnV~e 676 (728)
-|.|.|+--++..|..|..|.=+..
T Consensus 279 YH~gfn~Gfn~aEAvNFA~~~Wl~~ 303 (354)
T 3dxt_A 279 YHAGFNHGFNCAEAINFATPRWIDY 303 (354)
T ss_dssp EEEEEESSSEEEEEEEECCGGGHHH
T ss_pred eEEEeeccccHhHhhccCcHHHHHh
Confidence 9999999999999999999987753
No 17
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=95.42 E-value=0.02 Score=62.23 Aligned_cols=92 Identities=20% Similarity=0.239 Sum_probs=74.9
Q ss_pred eEEEeecCCChhHHHHHHHHHHHh-hccccCCCCCcccCCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEecCC
Q 004844 572 ALWDIFRRQDVPKLEAYLRKHFKE-FRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAG 650 (728)
Q Consensus 572 AlWdIFrreDv~KLreyL~kh~~E-f~h~~~~p~~~v~dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAG 650 (728)
-+|=.-..+++.|+++++++++.+ |. .|. +=+|...+.+++. .|+ +.||.-.+++|++||.|++=.|
T Consensus 253 K~WY~VP~~~~~kfE~l~k~~~p~~~~--~c~------~fL~h~~~lisP~---~L~-~~GIpv~r~vQ~pGEfViTfP~ 320 (373)
T 3opt_A 253 KQWYSIPQEDRFKFYKFMQEQFPEEAK--NCP------EFLRHKMFLASPK---LLQ-ENGIRCNEIVHHEGEFMITYPY 320 (373)
T ss_dssp EEEEECCGGGHHHHHHHHHHSSHHHHS--SCS------SCTTTSCEEECHH---HHH-TTTCCCEEEEECTTCEEEECTT
T ss_pred eEEEEeCHHHHHHHHHHHHHhChhhhh--hCH------HHhhCCcccCCHH---HHH-hcCCceEEEEECCCCEEEECCC
Confidence 489999999999999999988764 32 232 3356677888885 344 5799999999999999999999
Q ss_pred CccccccccccccccccccCCccHH
Q 004844 651 CPHQVRNLKSCTKVAVDFVSPENVD 675 (728)
Q Consensus 651 cPHQVrNL~SCIKVAlDFVSPEnV~ 675 (728)
+=|.|.|+--++..|..|..|+=+.
T Consensus 321 aYH~gfn~Gfn~aEAvNFA~~~Wl~ 345 (373)
T 3opt_A 321 GYHAGFNYGYNLAESVNFALEEWLP 345 (373)
T ss_dssp CCEEEEESSSEEEEEEEECCC----
T ss_pred ceEEEEecCccHHHHHccCcHHHHH
Confidence 9999999999999999999987654
No 18
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=95.27 E-value=0.027 Score=61.37 Aligned_cols=95 Identities=16% Similarity=0.138 Sum_probs=78.6
Q ss_pred ceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEecCC
Q 004844 571 GALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAG 650 (728)
Q Consensus 571 GAlWdIFrreDv~KLreyL~kh~~Ef~h~~~~p~~~v~dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAG 650 (728)
--.|=.=.++++.|+++++++++.+.-. .| .+=+|...+.++++. |+ +.||.-.+++|++||.|++=.|
T Consensus 227 pK~WY~VP~~~~~kfE~l~~~~~P~~~~-~~------~~~L~h~~~~isP~~---L~-~~GIpv~r~vQ~pGEfViTfP~ 295 (381)
T 2ox0_A 227 PKSWYSVPPEHGKRLERLAKGFFPGSAQ-SC------EAFLRHKMTLISPLM---LK-KYGIPFDKVTQEAGEFMITFPY 295 (381)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHSHHHHH-HC------TTGGGGSCEEECHHH---HH-HTTCCCEEEEECTTCEEEECTT
T ss_pred ceEEEecCHHHHHHHHHHHHHhChhhhh-cc------hHHhhccccccCHHH---HH-HCCCceEEEEecCCCEEEECCC
Confidence 3589999999999999999998754211 22 233566788899853 33 4799999999999999999999
Q ss_pred CccccccccccccccccccCCccHHH
Q 004844 651 CPHQVRNLKSCTKVAVDFVSPENVDE 676 (728)
Q Consensus 651 cPHQVrNL~SCIKVAlDFVSPEnV~e 676 (728)
+=|.|.|+=-++..|..|..|+=+..
T Consensus 296 aYH~gfn~GfN~aEAvNFA~~~Wl~~ 321 (381)
T 2ox0_A 296 GYHAGFNHGFNCAESTNFATRRWIEY 321 (381)
T ss_dssp CEEEEEECSSEEEEEEEECCTTHHHH
T ss_pred cEEEeecCcccHHHHhccCcHHHHHH
Confidence 99999999999999999998876644
No 19
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=93.22 E-value=0.044 Score=42.17 Aligned_cols=32 Identities=22% Similarity=0.704 Sum_probs=25.4
Q ss_pred eEecCCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 8 VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 8 vv~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
++.-..|+ ..||..||.+|... ...||.||..
T Consensus 21 ~~~~~~C~-H~f~~~Ci~~w~~~------~~~CP~Cr~~ 52 (55)
T 1iym_A 21 ARFLPRCG-HGFHAECVDMWLGS------HSTCPLCRLT 52 (55)
T ss_dssp CEECSSSC-CEECTTHHHHTTTT------CCSCSSSCCC
T ss_pred eEECCCCC-CcccHHHHHHHHHc------CCcCcCCCCE
Confidence 55556788 78999999999864 3579999964
No 20
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11
Probab=92.93 E-value=0.064 Score=57.24 Aligned_cols=57 Identities=18% Similarity=0.281 Sum_probs=42.0
Q ss_pred ccceEEEeecCceeEecCCCccccccc--cccccccccccCCccHHHHHHH--------HHHhhcCCccc
Q 004844 632 VEPWTFEQKLGEAVFIPAGCPHQVRNL--KSCTKVAVDFVSPENVDECLRL--------TKEFRLLPKNH 691 (728)
Q Consensus 632 VepWtf~Q~~GEAVFIPAGcPHQVrNL--~SCIKVAlDFVSPEnV~ec~rL--------teEfR~Lp~~H 691 (728)
..++.++-.+||+.|||+|.+|||+++ ..|+.|.+- +| +..+-+.- ..+||.||...
T Consensus 215 ~~~~~~~L~pGD~LyiP~gwwH~v~s~~~~~slsvsi~--~~-~~~dll~~~l~~~~~~~~~~r~lp~~~ 281 (342)
T 1vrb_A 215 PDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFG--QP-AWLDLMLAALRKKLISDNRFRELAVNH 281 (342)
T ss_dssp CSSEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEEC--CC-BHHHHHHHHHHHHHTTSGGGGSBCCCT
T ss_pred CCceEEEECCCcEEEeCCCccEEEEECCCCceEEEEEC--CC-cHHHHHHHHHHHHHHhCHHhhhCCCcc
Confidence 567999999999999999999999999 468888877 55 33332211 23677776543
No 21
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=92.45 E-value=0.03 Score=49.15 Aligned_cols=34 Identities=32% Similarity=0.971 Sum_probs=27.9
Q ss_pred eEecCCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCc
Q 004844 8 VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (728)
Q Consensus 8 vv~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~C 47 (728)
.|.|..|+ ..||..||.+|...-. ..||.||..-
T Consensus 35 p~~~~~Cg-H~FC~~Ci~~~~~~~~-----~~CP~Cr~~~ 68 (100)
T 3lrq_A 35 ARLCPHCS-KLCCFSCIRRWLTEQR-----AQCPHCRAPL 68 (100)
T ss_dssp EEECTTTC-CEEEHHHHHHHHHHTC-----SBCTTTCCBC
T ss_pred ccccCCCC-ChhhHHHHHHHHHHCc-----CCCCCCCCcC
Confidence 56789999 8899999999975431 6899999865
No 22
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.39 E-value=0.046 Score=45.03 Aligned_cols=33 Identities=21% Similarity=0.790 Sum_probs=25.5
Q ss_pred ceEecCCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 7 YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 7 ~vv~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
..+....|+ ..||..||.+|... ...||+||..
T Consensus 37 ~~~~~l~C~-H~fh~~Ci~~w~~~------~~~CP~Cr~~ 69 (75)
T 1x4j_A 37 QLLRVLPCN-HEFHAKCVDKWLKA------NRTCPICRAD 69 (75)
T ss_dssp CEEEEETTT-EEEETTHHHHHHHH------CSSCTTTCCC
T ss_pred CeEEEECCC-CHhHHHHHHHHHHc------CCcCcCcCCc
Confidence 345666788 78999999999732 3589999864
No 23
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=91.90 E-value=0.056 Score=43.60 Aligned_cols=36 Identities=31% Similarity=0.826 Sum_probs=27.8
Q ss_pred CceEecCCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCcc
Q 004844 6 KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 48 (728)
Q Consensus 6 ~~vv~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~CN 48 (728)
++++.-..|+ ..||..||.+|... ...||+||..-.
T Consensus 27 ~~~~~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 27 GRLIVSTECG-HVFCSQCLRDSLKN------ANTCPTCRKKIN 62 (71)
T ss_dssp TCCEEECTTS-CEEEHHHHHHHHHH------CSBCTTTCCBCC
T ss_pred cCCeEeCCCC-ChHhHHHHHHHHHc------CCCCCCCCCccC
Confidence 3456677898 88999999999742 368999997543
No 24
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=91.76 E-value=0.05 Score=41.78 Aligned_cols=33 Identities=18% Similarity=0.412 Sum_probs=26.1
Q ss_pred ceEecCCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 7 YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 7 ~vv~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
..+....|+ ..||..||.+|...- ..||+||..
T Consensus 20 ~~~~~~~Cg-H~fc~~Ci~~~~~~~------~~CP~Cr~~ 52 (55)
T 2ecm_A 20 VVAHVLPCG-HLLHRTCYEEMLKEG------YRCPLCSGP 52 (55)
T ss_dssp SCEEECTTS-CEEETTHHHHHHHHT------CCCTTSCCS
T ss_pred cCeEecCCC-CcccHHHHHHHHHcC------CcCCCCCCc
Confidence 456677898 789999999997532 789999863
No 25
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=91.67 E-value=0.052 Score=48.29 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.6
Q ss_pred EEeecCceeEecCCCccccccccc
Q 004844 637 FEQKLGEAVFIPAGCPHQVRNLKS 660 (728)
Q Consensus 637 f~Q~~GEAVFIPAGcPHQVrNL~S 660 (728)
+.=+.||.|+||||.||+++|.-.
T Consensus 75 ~~l~~Gd~i~ipa~~~H~~~n~~~ 98 (112)
T 2opk_A 75 RVMRPGDWLHVPAHCRHRVAWTDG 98 (112)
T ss_dssp EEECTTEEEEECTTCCEEEEEECS
T ss_pred EEECCCCEEEECCCCcEEEEeCCC
Confidence 444679999999999999999863
No 26
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.61 E-value=0.032 Score=44.59 Aligned_cols=33 Identities=30% Similarity=0.884 Sum_probs=26.0
Q ss_pred ceEecCCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 7 YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 7 ~vv~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
+.+.-..|+ ..||..||.+|... ...||+||..
T Consensus 33 ~~~~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~~ 65 (69)
T 2ea6_A 33 RLIVSTECG-HVFCSQCLRDSLKN------ANTCPTCRKK 65 (69)
T ss_dssp CCEEECSSS-CEEEHHHHHHHHHH------CSSCTTTCCC
T ss_pred CCeEeCCCC-ChhcHHHHHHHHHc------CCCCCCCCCc
Confidence 345567898 79999999999743 4589999975
No 27
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=91.40 E-value=0.032 Score=43.93 Aligned_cols=34 Identities=29% Similarity=0.848 Sum_probs=26.7
Q ss_pred ceEecCCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCc
Q 004844 7 YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (728)
Q Consensus 7 ~vv~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~C 47 (728)
+.+.-..|+ ..||..||.+|... ...||.||..-
T Consensus 21 ~~~~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~~~ 54 (64)
T 2xeu_A 21 RLIVSTECG-HVFCSQCLRDSLKN------ANTCPTCRKKI 54 (64)
T ss_dssp CCEEEETTS-CEEEHHHHHHHHHH------CSBCTTTCCBC
T ss_pred CCEEeCCCC-CchhHHHHHHHHHc------CCCCCCCCccC
Confidence 455667898 88999999999743 45899998753
No 28
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=91.23 E-value=0.086 Score=45.77 Aligned_cols=58 Identities=26% Similarity=0.448 Sum_probs=38.7
Q ss_pred cCCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccccccccccCCc
Q 004844 608 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (728)
Q Consensus 608 ~dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (728)
.|+ +++-+|+..-.- ++.++.=++.=..||+++||+|.||+++|...+.-+.+ ++.||
T Consensus 57 ~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~v-~~~~~ 114 (115)
T 1yhf_A 57 SSP-GDAMVTILSGLA-----EITIDQETYRVAEGQTIVMPAGIPHALYAVEAFQMLLV-VVKPE 114 (115)
T ss_dssp CCS-SEEEEEEEESEE-----EEEETTEEEEEETTCEEEECTTSCEEEEESSCEEEEEE-EECSC
T ss_pred ECC-CcEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCCEEEEECCCceEEEE-EEccC
Confidence 455 556666654432 13345556777899999999999999999876543333 34444
No 29
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=91.15 E-value=0.071 Score=46.67 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEeecCceeEecCCCccccccccc
Q 004844 637 FEQKLGEAVFIPAGCPHQVRNLKS 660 (728)
Q Consensus 637 f~Q~~GEAVFIPAGcPHQVrNL~S 660 (728)
+.-..||++|||+|.+|++.|.-+
T Consensus 61 ~~l~~G~~~~ip~G~~H~~~N~g~ 84 (98)
T 3lag_A 61 AQLKTGRSYARKAGVQHDVRNEST 84 (98)
T ss_dssp CCBCTTCCEEECTTCEEEEBCCSS
T ss_pred EEecCCcEEEEcCCCcEECEECCC
Confidence 445789999999999999999753
No 30
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=91.03 E-value=0.07 Score=46.41 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=39.4
Q ss_pred ccCCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccccccccccCCc
Q 004844 607 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (728)
Q Consensus 607 v~dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (728)
..|| .+|-+|+-.-.- ++-+..=++.=..||+++||+|.||+++|...|. .+...+|.
T Consensus 50 H~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~--~l~v~~p~ 107 (116)
T 2pfw_A 50 HAHR-HSQVSYVVEGEF-----HVNVDGVIKVLTAGDSFFVPPHVDHGAVCPTGGI--LIDTFSPA 107 (116)
T ss_dssp ECCS-SEEEEEEEEECE-----EEEETTEEEEECTTCEEEECTTCCEEEEESSCEE--EEEEEESC
T ss_pred EECC-cceEEEEEeeEE-----EEEECCEEEEeCCCCEEEECcCCceeeEeCCCcE--EEEEECCc
Confidence 4566 666666643322 2334444677789999999999999999998763 34445553
No 31
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=90.80 E-value=0.086 Score=46.84 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=37.8
Q ss_pred cCCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccccccccccCCc
Q 004844 608 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (728)
Q Consensus 608 ~dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (728)
.|| +++-+|+-.-.- ++-|..=++.=..||+|+||+|.||+++|...+. +.+-+|.|.
T Consensus 53 ~H~-~~e~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~-~~~~~v~p~ 110 (114)
T 3fjs_A 53 SVA-GPSTIQCLEGEV-----EIGVDGAQRRLHQGDLLYLGAGAAHDVNAITNTS-LLVTVVLVD 110 (114)
T ss_dssp CCS-SCEEEEEEESCE-----EEEETTEEEEECTTEEEEECTTCCEEEEESSSEE-EEEEEECC-
T ss_pred eCC-CcEEEEEEECEE-----EEEECCEEEEECCCCEEEECCCCcEEEEeCCCcE-EEEEEEeCC
Confidence 344 245555543322 2445555778889999999999999999997653 334555554
No 32
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=90.78 E-value=0.12 Score=46.60 Aligned_cols=41 Identities=32% Similarity=0.244 Sum_probs=31.1
Q ss_pred ccceEEEeecCceeEecCCCccccccccccccccccccCCc
Q 004844 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (728)
Q Consensus 632 VepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (728)
+..=++.=..||+|+||+|.||+++|...---+.+-+++|.
T Consensus 76 ~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~i~~~~ 116 (145)
T 3ht1_A 76 DQGRTEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLVVAPCE 116 (145)
T ss_dssp GGTEEEEECTTCEEEECTTCCBEEECCTTCCEEEEEEEESC
T ss_pred ECCEEEEECCCCEEEECCCCeEEeEcCCCCCEEEEEEECCC
Confidence 44556777899999999999999999866544455555554
No 33
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=90.66 E-value=0.13 Score=44.64 Aligned_cols=36 Identities=19% Similarity=0.676 Sum_probs=30.6
Q ss_pred CCceecCCccc-ccccccccCCCCC----cccchhchHHHh
Q 004844 121 DERVYCNHCAT-SIIDLHRSCPKCS----YELCLTCCKEIC 156 (728)
Q Consensus 121 DER~~CD~C~t-SI~D~HRsC~~Cs----ydLCL~CC~ElR 156 (728)
-..+.||.|.. +|+-.-..|..|. ||||..|....+
T Consensus 19 H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~ 59 (82)
T 2fc7_A 19 HVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLH 59 (82)
T ss_dssp ESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCC
T ss_pred eCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCcc
Confidence 34678999996 8999999999996 999999997654
No 34
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=90.37 E-value=0.077 Score=45.37 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=29.5
Q ss_pred Ccc-ceEEEeecCceeEecCCCccccccccccccccccccCC
Q 004844 631 GVE-PWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 671 (728)
Q Consensus 631 GVe-pWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSP 671 (728)
.++ .=++.=..||+++||||.||+++|...+. .+..++|
T Consensus 69 ~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~--~l~~~~p 108 (110)
T 2q30_A 69 VGDGDAVIPAPRGAVLVAPISTPHGVRAVTDMK--VLVTIAP 108 (110)
T ss_dssp ECGGGCEEEECTTEEEEEETTSCEEEEESSSEE--EEEEEES
T ss_pred EeCCCEEEEECCCCEEEeCCCCcEEEEEcCCcE--EEEEECC
Confidence 344 45677789999999999999999988753 3444554
No 35
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=90.28 E-value=0.12 Score=47.73 Aligned_cols=29 Identities=31% Similarity=1.004 Sum_probs=23.5
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCc
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~C 47 (728)
..|+ ..||..||.+|.-.- ..||+||..-
T Consensus 69 ~~Cg-H~fc~~Ci~~~~~~~------~~CP~Cr~~~ 97 (138)
T 4ayc_A 69 LNCA-HSFCSYCINEWMKRK------IECPICRKDI 97 (138)
T ss_dssp ETTS-CEEEHHHHHHHTTTC------SBCTTTCCBC
T ss_pred CCCC-CCccHHHHHHHHHcC------CcCCCCCCcC
Confidence 3688 789999999998653 5799999754
No 36
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=90.22 E-value=0.1 Score=42.09 Aligned_cols=32 Identities=28% Similarity=0.727 Sum_probs=24.4
Q ss_pred eEecCCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 8 VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 8 vv~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
.+....|+ ..||..||.+|... ...||+||..
T Consensus 29 ~~~~~~C~-H~fc~~Ci~~~~~~------~~~CP~Cr~~ 60 (69)
T 2kiz_A 29 DVRRLPCM-HLFHQVCVDQWLIT------NKKCPICRVD 60 (69)
T ss_dssp CEEECTTS-CEEEHHHHHHHHHH------CSBCTTTCSB
T ss_pred cEEEeCCC-CHHHHHHHHHHHHc------CCCCcCcCcc
Confidence 34556787 77999999999743 3469999864
No 37
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=90.06 E-value=0.12 Score=45.61 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=29.0
Q ss_pred eEEEeecCceeEecCCCccccccccccccccccccCCc
Q 004844 635 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (728)
Q Consensus 635 Wtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (728)
=++.=..||+|+||+|.||+++|..+---+.+.+++|-
T Consensus 79 ~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v~~p~ 116 (125)
T 3h8u_A 79 IVTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVVAPG 116 (125)
T ss_dssp CEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEEEST
T ss_pred eEEEeCCCCEEEECCCCEEEeEeCCCCCEEEEEEECCC
Confidence 35566789999999999999999876544555556653
No 38
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.02 E-value=0.059 Score=44.09 Aligned_cols=32 Identities=22% Similarity=0.633 Sum_probs=25.5
Q ss_pred EecCCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCc
Q 004844 9 VPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (728)
Q Consensus 9 v~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~C 47 (728)
|.-+.|+ ..||..||.+|... ...||.||..-
T Consensus 29 ~~~~~Cg-H~fC~~Ci~~~~~~------~~~CP~Cr~~~ 60 (72)
T 2djb_A 29 TTITECL-HTFCKSCIVRHFYY------SNRCPKCNIVV 60 (72)
T ss_dssp EECSSSC-CEECHHHHHHHHHH------CSSCTTTCCCC
T ss_pred CEECCCC-CHHHHHHHHHHHHc------CCcCCCcCccc
Confidence 4446888 88999999999843 47899998763
No 39
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=89.90 E-value=0.12 Score=43.21 Aligned_cols=38 Identities=32% Similarity=0.414 Sum_probs=26.6
Q ss_pred ceEEEeecCceeEecCCCccccccccccccccccccCC
Q 004844 634 PWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 671 (728)
Q Consensus 634 pWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSP 671 (728)
.=++.=..||+++||+|.||+++|..+---+.+-+++|
T Consensus 66 ~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~~v~~p 103 (105)
T 1v70_A 66 EEEALLAPGMAAFAPAGAPHGVRNESASPALLLVVTAP 103 (105)
T ss_dssp TEEEEECTTCEEEECTTSCEEEECCSSSCEEEEEEEES
T ss_pred CEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEeCC
Confidence 33566679999999999999999975422233334444
No 40
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=89.65 E-value=0.24 Score=43.73 Aligned_cols=60 Identities=27% Similarity=0.355 Sum_probs=41.0
Q ss_pred ccCCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccccccccccCCcc
Q 004844 607 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 673 (728)
Q Consensus 607 v~dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEn 673 (728)
..|| ++|-+|+-.-.- ++-|..-++.=..||+|+||+|.||.++|... --+.+.+++|-.
T Consensus 57 H~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~-~~~~l~v~~p~~ 116 (126)
T 4e2g_A 57 HEHP-HEQAGVMLEGTL-----ELTIGEETRVLRPGMAYTIPGGVRHRARTFED-GCLVLDIFSPPR 116 (126)
T ss_dssp ECCS-SEEEEEEEEECE-----EEEETTEEEEECTTEEEEECTTCCEEEECCTT-CEEEEEEEESCC
T ss_pred ccCC-CceEEEEEEeEE-----EEEECCEEEEeCCCCEEEECCCCcEEeEECCC-CEEEEEEECCCC
Confidence 3566 466666644322 23444556777899999999999999999988 334566666643
No 41
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=89.45 E-value=0.14 Score=44.07 Aligned_cols=32 Identities=28% Similarity=0.723 Sum_probs=24.8
Q ss_pred eEecCCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 8 VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 8 vv~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
.+.-..|+ ..||..||.+|... ...||.||..
T Consensus 55 ~~~~l~C~-H~Fh~~Ci~~wl~~------~~~CP~Cr~~ 86 (91)
T 2l0b_A 55 VATELPCH-HYFHKPCVSIWLQK------SGTCPVCRCM 86 (91)
T ss_dssp EEEEETTT-EEEEHHHHHHHHTT------TCBCTTTCCB
T ss_pred cEEecCCC-ChHHHHHHHHHHHc------CCcCcCcCcc
Confidence 34445688 78999999999854 2489999964
No 42
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=89.31 E-value=0.17 Score=43.27 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.5
Q ss_pred EEEeecCceeEecCCCccccccccc
Q 004844 636 TFEQKLGEAVFIPAGCPHQVRNLKS 660 (728)
Q Consensus 636 tf~Q~~GEAVFIPAGcPHQVrNL~S 660 (728)
++.=..||+|+||||.||+++|.-+
T Consensus 60 ~~~l~~Gd~~~~p~~~~H~~~N~g~ 84 (97)
T 2fqp_A 60 TSQLTRGVSYTRPEGVEHNVINPSD 84 (97)
T ss_dssp EEEECTTCCEEECTTCEEEEECCSS
T ss_pred EEEEcCCCEEEeCCCCcccCEeCCC
Confidence 4556779999999999999999864
No 43
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=89.26 E-value=0.12 Score=41.19 Aligned_cols=33 Identities=27% Similarity=0.863 Sum_probs=28.2
Q ss_pred ceecCCcccccccccccCCCC-CcccchhchHHHh
Q 004844 123 RVYCNHCATSIIDLHRSCPKC-SYELCLTCCKEIC 156 (728)
Q Consensus 123 R~~CD~C~tSI~D~HRsC~~C-sydLCL~CC~ElR 156 (728)
.+.||+|...| -.-..|..| .||||..|...-.
T Consensus 6 ~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~~ 39 (52)
T 1tot_A 6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTKS 39 (52)
T ss_dssp CEEETTTTEEE-SSEEEESSSSSCEECHHHHHHHC
T ss_pred EEECCCCCCCC-cceEEcCCCCCchhHHHHHhCCC
Confidence 47899999996 677889999 6999999998754
No 44
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=89.21 E-value=0.14 Score=54.62 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=34.0
Q ss_pred EEEeecCceeEecCCCccccccccccccccccccCC-ccHHH
Q 004844 636 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP-ENVDE 676 (728)
Q Consensus 636 tf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSP-EnV~e 676 (728)
++.=+.||+||||||.||+++|...- |..+=|.+| ..++.
T Consensus 292 ~~~l~~Gd~~~iPag~~h~~~~~~~~-~~~l~~~~g~~g~~~ 332 (350)
T 1juh_A 292 ATELGSGDVAFIPGGVEFKYYSEAYF-SKVLFVSSGSDGLDQ 332 (350)
T ss_dssp CEEECTTCEEEECTTCCEEEEESSSS-EEEEEEEESSSSHHH
T ss_pred EEEeCCCCEEEECCCCCEEEEecCCe-EEEEEEecCccchhh
Confidence 45567899999999999999998776 888888888 77766
No 45
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=89.21 E-value=0.13 Score=45.10 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=28.6
Q ss_pred cceEE-EeecCceeEecCCCcccccccccc--ccccccccCCcc
Q 004844 633 EPWTF-EQKLGEAVFIPAGCPHQVRNLKSC--TKVAVDFVSPEN 673 (728)
Q Consensus 633 epWtf-~Q~~GEAVFIPAGcPHQVrNL~SC--IKVAlDFVSPEn 673 (728)
..-++ .=..||+++||+|.||+++|..+. .-+.+.|-+|+.
T Consensus 63 ~~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i~~~~~~~ 106 (117)
T 2b8m_A 63 EDQEPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVVKAPHPKK 106 (117)
T ss_dssp TTSCCEEEETTCEEEECTTCEEEEECCSSSEEEEEEEECSCGGG
T ss_pred CCEEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCCCCC
Confidence 33344 567899999999999999998653 334444444443
No 46
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=89.20 E-value=0.14 Score=41.08 Aligned_cols=32 Identities=25% Similarity=0.788 Sum_probs=24.8
Q ss_pred EecCCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCc
Q 004844 9 VPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (728)
Q Consensus 9 v~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~C 47 (728)
+.-..|+ ..||..||.+|.. ....||.||..-
T Consensus 19 ~~~~~C~-H~fc~~Ci~~~~~------~~~~CP~Cr~~~ 50 (68)
T 1chc_A 19 SMALPCL-HAFCYVCITRWIR------QNPTCPLCKVPV 50 (68)
T ss_dssp EEETTTT-EEESTTHHHHHHH------HSCSTTTTCCCC
T ss_pred cEecCCC-CeeHHHHHHHHHh------CcCcCcCCChhh
Confidence 3456788 7799999999973 236899998754
No 47
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=89.01 E-value=0.13 Score=44.80 Aligned_cols=35 Identities=9% Similarity=0.137 Sum_probs=28.0
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccccc
Q 004844 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKV 664 (728)
Q Consensus 630 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKV 664 (728)
+.|..=++.=..||+++||||.||.++|...|.=+
T Consensus 71 ~~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~ 105 (114)
T 2ozj_A 71 ITFDDQKIDLVPEDVLMVPAHKIHAIAGKGRFKML 105 (114)
T ss_dssp EEETTEEEEECTTCEEEECTTCCBEEEEEEEEEEE
T ss_pred EEECCEEEEecCCCEEEECCCCcEEEEeCCCcEEE
Confidence 45556677788999999999999999998665433
No 48
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=88.93 E-value=0.19 Score=41.42 Aligned_cols=28 Identities=29% Similarity=0.914 Sum_probs=22.6
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
..|+ ..||..||.+|...- ..||+||..
T Consensus 34 ~~C~-H~fc~~Ci~~~~~~~------~~CP~Cr~~ 61 (78)
T 2ect_A 34 LPCN-HLFHDSCIVPWLEQH------DSCPVCRKS 61 (78)
T ss_dssp CTTS-CEEETTTTHHHHTTT------CSCTTTCCC
T ss_pred eCCC-CeecHHHHHHHHHcC------CcCcCcCCc
Confidence 4687 789999999998532 589999875
No 49
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.93 E-value=0.12 Score=42.04 Aligned_cols=28 Identities=29% Similarity=0.746 Sum_probs=23.2
Q ss_pred CCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCc
Q 004844 13 KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (728)
Q Consensus 13 ~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~C 47 (728)
.|+ ..||..||.+|...- ..||+||..-
T Consensus 32 ~Cg-H~fC~~Ci~~~~~~~------~~CP~Cr~~~ 59 (71)
T 2d8t_A 32 PCK-HVFCYLCVKGASWLG------KRCALCRQEI 59 (71)
T ss_dssp TTT-EEEEHHHHHHCTTCS------SBCSSSCCBC
T ss_pred cCC-CHHHHHHHHHHHHCC------CcCcCcCchh
Confidence 688 789999999998653 6899999753
No 50
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=88.55 E-value=0.2 Score=42.16 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=22.7
Q ss_pred EEEeecCceeEecCCCccccccccccc
Q 004844 636 TFEQKLGEAVFIPAGCPHQVRNLKSCT 662 (728)
Q Consensus 636 tf~Q~~GEAVFIPAGcPHQVrNL~SCI 662 (728)
++.=..||+++||+|.+|+++|...|.
T Consensus 69 ~~~l~~Gd~~~ip~~~~H~~~~~~~~~ 95 (102)
T 3d82_A 69 NITLQAGEMYVIPKGVEHKPMAKEECK 95 (102)
T ss_dssp EEEEETTEEEEECTTCCBEEEEEEEEE
T ss_pred EEEEcCCCEEEECCCCeEeeEcCCCCE
Confidence 455578999999999999999986554
No 51
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=88.47 E-value=0.14 Score=45.29 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=25.8
Q ss_pred ceEEEeecCceeEecCCCccccccccccccc
Q 004844 634 PWTFEQKLGEAVFIPAGCPHQVRNLKSCTKV 664 (728)
Q Consensus 634 pWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKV 664 (728)
.-++.=..||+|+||||.||+.+|....-|+
T Consensus 67 g~~~~l~~GD~i~ip~g~~H~~~n~~~~~~~ 97 (101)
T 1o5u_A 67 GKKYVIEKGDLVTFPKGLRCRWKVLEPVRKH 97 (101)
T ss_dssp CCEEEEETTCEEEECTTCEEEEEEEEEEEEE
T ss_pred CCEEEECCCCEEEECCCCcEEEEeCCCeeEE
Confidence 4567788999999999999999998765443
No 52
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Probab=88.27 E-value=0.27 Score=50.16 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=52.6
Q ss_pred ccCCcCCcceeeCHHHHHHHHHHh--------Cccce----------EEEeecCceeEecCCCccccccccccc-ccccc
Q 004844 607 VIHPIHDQCFYLSSEHKKKLKEEF--------GVEPW----------TFEQKLGEAVFIPAGCPHQVRNLKSCT-KVAVD 667 (728)
Q Consensus 607 v~dPIHDQ~fYLt~~hk~kLkeEy--------GVepW----------tf~Q~~GEAVFIPAGcPHQVrNL~SCI-KVAlD 667 (728)
..||-.+..||+-.-.-. + .. |-++| ++.=..||.||||+|.||..+|.-+-- ++.+-
T Consensus 59 H~H~~~~E~~yVLeG~~~-~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~H~~~N~~~~~~~~~l~ 135 (239)
T 2xlg_A 59 HIHYFINEWFWTPEGGIE-L--FHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYMHGFVNPTDKTLPIVFV 135 (239)
T ss_dssp EEESSEEEEEEETTCCCE-E--EEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEEEEEECCSSSCEEEEEE
T ss_pred eECCCccEEEEEEEeEEE-E--EEEecccccCCCcccccccccCceeEEEECCCCEEEECCCCCEEEEeCCCCCEEEEEE
Confidence 456666777776544221 1 12 44555 788889999999999999999976532 22133
Q ss_pred cc----------CCccHHHHHHHHHHhh
Q 004844 668 FV----------SPENVDECLRLTKEFR 685 (728)
Q Consensus 668 FV----------SPEnV~ec~rLteEfR 685 (728)
++ +|....++++...+..
T Consensus 136 ~~~~~~~~~~~~~p~~~e~~f~~l~~~~ 163 (239)
T 2xlg_A 136 WMRNEVAPDFPYHDGGMREYFQAVGPRI 163 (239)
T ss_dssp EEECSSCTTCSCTTCSHHHHHHHHSCBC
T ss_pred EEecccChhhccCcchHHHHHHHhhhhc
Confidence 34 8888999998887653
No 53
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=88.11 E-value=0.16 Score=45.41 Aligned_cols=36 Identities=28% Similarity=0.731 Sum_probs=30.6
Q ss_pred CCCceecCCccc-ccccccccCCCC-CcccchhchHHH
Q 004844 120 NDERVYCNHCAT-SIIDLHRSCPKC-SYELCLTCCKEI 155 (728)
Q Consensus 120 ~DER~~CD~C~t-SI~D~HRsC~~C-sydLCL~CC~El 155 (728)
.-..+.||.|.. +|.-+-..|..| .||||..|...-
T Consensus 28 ~H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~ 65 (98)
T 2dip_A 28 KHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY 65 (98)
T ss_dssp SCCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT
T ss_pred ccCCCCCcCCCCCCcccCeEECCCCCCccHHHHHHccC
Confidence 334589999996 899999999999 899999997754
No 54
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.92 E-value=0.12 Score=41.47 Aligned_cols=29 Identities=17% Similarity=0.662 Sum_probs=22.8
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
+.|+ ..||..||.+|... -...||.||..
T Consensus 31 ~~Cg-H~fC~~Ci~~~~~~-----~~~~CP~Cr~~ 59 (66)
T 2ecy_A 31 TECG-HRFCESCMAALLSS-----SSPKCTACQES 59 (66)
T ss_dssp CSSS-CCCCHHHHHHHHTT-----SSCCCTTTCCC
T ss_pred CCCC-CHHHHHHHHHHHHh-----CcCCCCCCCcC
Confidence 5788 78999999999851 13479999875
No 55
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=87.85 E-value=0.24 Score=42.17 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=29.0
Q ss_pred cceEEEeecCceeEecCCCccccccccccccccccccCCc
Q 004844 633 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (728)
Q Consensus 633 epWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (728)
..=++.=..||+++||+|.||+.+|..+---+.+-+++|.
T Consensus 60 ~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v~~~~ 99 (113)
T 2gu9_A 60 DGHTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFYHPP 99 (113)
T ss_dssp TTEEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEESC
T ss_pred CCEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCC
Confidence 3445677899999999999999999865333344445554
No 56
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=87.82 E-value=0.17 Score=43.85 Aligned_cols=32 Identities=25% Similarity=0.701 Sum_probs=25.5
Q ss_pred EecCCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCc
Q 004844 9 VPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (728)
Q Consensus 9 v~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~C 47 (728)
|....|+ ..||..||.+|... ...||.||...
T Consensus 36 ~~~~~Cg-H~fC~~Ci~~~~~~------~~~CP~Cr~~~ 67 (99)
T 2y43_A 36 MIIPQCS-HNYCSLCIRKFLSY------KTQCPTCCVTV 67 (99)
T ss_dssp EECTTTC-CEEEHHHHHHHHTT------CCBCTTTCCBC
T ss_pred CEECCCC-CHhhHHHHHHHHHC------CCCCCCCCCcC
Confidence 3446798 88999999999874 25899998764
No 57
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=87.76 E-value=0.27 Score=46.64 Aligned_cols=41 Identities=24% Similarity=0.173 Sum_probs=29.6
Q ss_pred ccceEEEeecCceeEecCCCccccccccccccccccccCCc
Q 004844 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (728)
Q Consensus 632 VepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (728)
|..=++.=..||+||||+|.+|+++|..+---+-+-.++|+
T Consensus 79 v~g~~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i~~~~ 119 (156)
T 3kgz_A 79 VGETISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCVVNAA 119 (156)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEECCSSSCEEEEEEEESS
T ss_pred ECCEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEEeCC
Confidence 44446677889999999999999999875433334445554
No 58
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=87.67 E-value=0.24 Score=47.24 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=40.1
Q ss_pred ccCCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEecCCCcccccccc-ccccccccccCCc
Q 004844 607 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLK-SCTKVAVDFVSPE 672 (728)
Q Consensus 607 v~dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~-SCIKVAlDFVSPE 672 (728)
..|+ ++|-+|+-.-.- ++-|..=++.=..||+||||+|.||+++|.. +---+.+-+++|+
T Consensus 72 H~H~-~~E~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~ 132 (167)
T 3ibm_A 72 ERHE-HTHVVMVVRGHA-----EVVLDDRVEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIVDSD 132 (167)
T ss_dssp BBCS-SCEEEEEEESEE-----EEEETTEEEEECTTCEEEECTTCCEEEEEESSSCCEEEEEEEESS
T ss_pred ccCC-CcEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEeCC
Confidence 4566 677777654332 2344555777789999999999999999987 4322334445554
No 59
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.21 E-value=0.095 Score=43.75 Aligned_cols=30 Identities=23% Similarity=0.711 Sum_probs=24.9
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCcc
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 48 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~CN 48 (728)
+.|+ ..||..||.+|+.. ...||+||..-+
T Consensus 31 ~~Cg-H~fC~~Ci~~~~~~------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 31 TKCR-HYFCESCALEHFRA------TPRCYICDQPTG 60 (81)
T ss_dssp CTTS-CEEEHHHHHHHHHH------CSBCSSSCCBCC
T ss_pred ccCC-CHhHHHHHHHHHHC------CCcCCCcCcccc
Confidence 5788 78999999999842 568999998765
No 60
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris CGA009} PDB: 3lag_A*
Probab=87.08 E-value=0.19 Score=44.26 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.3
Q ss_pred EeecCceeEecCCCccccccccc
Q 004844 638 EQKLGEAVFIPAGCPHQVRNLKS 660 (728)
Q Consensus 638 ~Q~~GEAVFIPAGcPHQVrNL~S 660 (728)
.=..||++++|||.+|+++|--+
T Consensus 62 ~l~aGd~~~~p~G~~H~~~N~g~ 84 (98)
T 2ozi_A 62 QLKTGRSYARKAGVQHDVRNEST 84 (98)
T ss_dssp CBCTTCCEEECTTCEEEEEECSS
T ss_pred EECCCCEEEECCCCceeCEECCC
Confidence 44689999999999999999765
No 61
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.95 E-value=0.2 Score=40.89 Aligned_cols=27 Identities=22% Similarity=0.949 Sum_probs=21.5
Q ss_pred CCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 13 KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 13 ~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
.|+ ..||..||.+|... ...||+||..
T Consensus 35 ~C~-H~f~~~Ci~~~~~~------~~~CP~Cr~~ 61 (74)
T 2ep4_A 35 PCK-HAFHRKCLIKWLEV------RKVCPLCNMP 61 (74)
T ss_dssp TTT-EEEEHHHHHHHHHH------CSBCTTTCCB
T ss_pred CCC-CEecHHHHHHHHHc------CCcCCCcCcc
Confidence 587 78999999999742 3589999863
No 62
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.82 E-value=0.24 Score=40.83 Aligned_cols=34 Identities=29% Similarity=0.798 Sum_probs=29.7
Q ss_pred eecCCccc-ccccccccCCCC-CcccchhchHHHhc
Q 004844 124 VYCNHCAT-SIIDLHRSCPKC-SYELCLTCCKEICE 157 (728)
Q Consensus 124 ~~CD~C~t-SI~D~HRsC~~C-sydLCL~CC~ElR~ 157 (728)
+.||.|.. +|.-.-..|..| .||||..|...-+.
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~ 47 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHA 47 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCc
Confidence 78999996 599999999999 79999999987543
No 63
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=86.67 E-value=0.28 Score=46.34 Aligned_cols=35 Identities=23% Similarity=0.596 Sum_probs=26.9
Q ss_pred eEecCCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCcc
Q 004844 8 VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 48 (728)
Q Consensus 8 vv~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~CN 48 (728)
.|.+..|+ ..||..||.+|...- ...||.||....
T Consensus 67 p~~~~~Cg-H~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 67 TMTTKECL-HRFCADCIITALRSG-----NKECPTCRKKLV 101 (165)
T ss_dssp EEEETTTC-CEEEHHHHHHHHHTT-----CCBCTTTCCBCC
T ss_pred cCEeCCCC-ChhHHHHHHHHHHhC-----cCCCCCCCCcCC
Confidence 35566899 899999999997531 356999998754
No 64
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=86.59 E-value=0.21 Score=50.10 Aligned_cols=60 Identities=22% Similarity=0.180 Sum_probs=41.1
Q ss_pred ccCCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccccccccccCCc
Q 004844 607 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (728)
Q Consensus 607 v~dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (728)
..|| +.|-+|+..-.- ++.|..=++.=..||+|+||+|+||+++|.-+---+.++.++|-
T Consensus 162 H~H~-~~e~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~p~ 221 (243)
T 3h7j_A 162 HKHR-NEQIGICIGGGY-----DMTVEGCTVEMKFGTAYFCEPREDHGAINRSEKESKSINIFFPP 221 (243)
T ss_dssp ECCS-SEEEEEECSSCE-----EEEETTEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEEESC
T ss_pred EeCC-CcEEEEEEECEE-----EEEECCEEEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcCC
Confidence 3555 567777655422 23444556677899999999999999999866444556666664
No 65
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=86.45 E-value=0.25 Score=43.44 Aligned_cols=32 Identities=22% Similarity=0.700 Sum_probs=25.8
Q ss_pred EecCCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCc
Q 004844 9 VPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (728)
Q Consensus 9 v~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~C 47 (728)
|....|+ ..||..||.+|...- ..||.||...
T Consensus 29 ~~~~~Cg-H~fC~~Ci~~~~~~~------~~CP~Cr~~~ 60 (108)
T 2ckl_A 29 TTIIECL-HSFCKTCIVRYLETS------KYCPICDVQV 60 (108)
T ss_dssp EEETTTC-CEEEHHHHHHHHTSC------SBCTTTCCBS
T ss_pred CEeCCCC-ChhhHHHHHHHHHhC------CcCcCCCccc
Confidence 4456898 889999999998752 7899998754
No 66
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=86.28 E-value=0.21 Score=44.20 Aligned_cols=40 Identities=23% Similarity=0.440 Sum_probs=27.9
Q ss_pred ceEecCCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCcc
Q 004844 7 YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 48 (728)
Q Consensus 7 ~vv~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~CN 48 (728)
.++.-..|+ ..||..||.+|...- ...-...||.||..-.
T Consensus 54 ~~~~~~~C~-H~Fh~~Ci~~wl~~~-~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 54 VVGRLTKCS-HAFHLLCLLAMYCNG-NKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CCEEESSSC-CEECHHHHHHHHHHT-CCSSCCBCTTTCCBSS
T ss_pred cceecCCCC-CcccHHHHHHHHHcc-cCCCCCcCCCCCCccC
Confidence 456678898 899999999997210 0012358999997643
No 67
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.22 E-value=0.17 Score=40.43 Aligned_cols=30 Identities=23% Similarity=0.623 Sum_probs=23.6
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCc
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~C 47 (728)
+.|+ ..||..||.+|+..- ...||.||..-
T Consensus 24 ~~Cg-H~fC~~Ci~~~~~~~-----~~~CP~Cr~~~ 53 (65)
T 1g25_A 24 NVCG-HTLCESCVDLLFVRG-----AGNCPECGTPL 53 (65)
T ss_dssp CTTC-CCEEHHHHHHHHHTT-----SSSCTTTCCCC
T ss_pred CCCC-CHhHHHHHHHHHHcC-----CCcCCCCCCcc
Confidence 5788 889999999997531 35799998753
No 68
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.12 E-value=0.24 Score=38.16 Aligned_cols=28 Identities=29% Similarity=0.954 Sum_probs=21.5
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCC
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFC 43 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~C 43 (728)
..|+ ..||..||.+|...+. -...||+|
T Consensus 31 ~~Cg-H~fC~~Ci~~~~~~~~---~~~~CP~C 58 (58)
T 2ecj_A 31 IECG-HNFCKACITRWWEDLE---RDFPCPVC 58 (58)
T ss_dssp CSSC-CCCCHHHHHHHTTSSC---CSCCCSCC
T ss_pred CCCC-CccCHHHHHHHHHhcC---CCCCCCCC
Confidence 4687 7899999999976532 24689988
No 69
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.08 E-value=0.32 Score=43.55 Aligned_cols=26 Identities=23% Similarity=0.846 Sum_probs=22.9
Q ss_pred CCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCc
Q 004844 13 KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (728)
Q Consensus 13 ~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~C 47 (728)
.|+ ..||..||.+|.. ..||.||...
T Consensus 40 ~Cg-H~fC~~Ci~~~~~--------~~CP~Cr~~~ 65 (117)
T 1jm7_B 40 GCE-HIFCSNCVSDCIG--------TGCPVCYTPA 65 (117)
T ss_dssp SSS-CCBCTTTGGGGTT--------TBCSSSCCBC
T ss_pred CCC-CHHHHHHHHHHhc--------CCCcCCCCcC
Confidence 688 8999999999986 7899999874
No 70
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=85.89 E-value=0.12 Score=42.47 Aligned_cols=36 Identities=19% Similarity=0.485 Sum_probs=25.9
Q ss_pred CCCCCcccccchhhhhCCCC-CHHHHHhhCCCCCCCcc
Q 004844 12 GKCRTKVYCIQCIKQWYPKM-SELDVAEICPFCRRNCN 48 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~l-t~~di~~~CP~Crg~CN 48 (728)
..|+ ..||..||.+|+..- +...-...||.||..-.
T Consensus 28 l~Cg-H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 28 LDCG-HSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CSSS-CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred CCCC-CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 3688 789999999998752 11122468999998754
No 71
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=85.79 E-value=0.31 Score=43.43 Aligned_cols=34 Identities=26% Similarity=0.817 Sum_probs=26.7
Q ss_pred ceEecCCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCc
Q 004844 7 YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (728)
Q Consensus 7 ~vv~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~C 47 (728)
+.+.-+.|+ ..||..||.+|...- ..||+||..-
T Consensus 25 ~~~~~~~Cg-H~fc~~Ci~~~~~~~------~~CP~Cr~~~ 58 (133)
T 4ap4_A 25 RLIVSTECG-HVFCSQCLRDSLKNA------NTCPTCRKKI 58 (133)
T ss_dssp CCEEEETTC-CEEEHHHHHHHHTTC------SBCTTTCCBC
T ss_pred cCeEecCCC-ChhhHHHHHHHHHhC------CCCCCCCCcC
Confidence 345667899 799999999998643 3899998754
No 72
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.36 E-value=0.44 Score=40.13 Aligned_cols=32 Identities=28% Similarity=0.858 Sum_probs=25.2
Q ss_pred eEecCCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 8 VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 8 vv~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
++.-..|+ ..|+..||.+|...- ..||+||..
T Consensus 42 ~~~~~~C~-H~FH~~Ci~~Wl~~~------~~CP~CR~~ 73 (81)
T 2ecl_A 42 VVVWGECN-HSFHNCCMSLWVKQN------NRCPLCQQD 73 (81)
T ss_dssp CEEEETTS-CEEEHHHHHHHTTTC------CBCTTTCCB
T ss_pred EEEeCCCC-CccChHHHHHHHHhC------CCCCCcCCC
Confidence 44445788 889999999998753 489999965
No 73
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=85.31 E-value=0.38 Score=41.46 Aligned_cols=38 Identities=18% Similarity=0.404 Sum_probs=26.5
Q ss_pred eEEEeecCceeEecCCCccccccccccccccccccCCccHH
Q 004844 635 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVD 675 (728)
Q Consensus 635 Wtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ 675 (728)
=++.=..||+++||+|.||..+|...|.=+ ++.|....
T Consensus 67 ~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l---~i~~~~~~ 104 (107)
T 2i45_A 67 GSMTIREGEMAVVPKSVSHRPRSENGCSLV---LIELSDPS 104 (107)
T ss_dssp CEEEECTTEEEEECTTCCEEEEEEEEEEEE---EEECC---
T ss_pred cEEEECCCCEEEECCCCcEeeEeCCCeEEE---EEECCCcc
Confidence 467778899999999999999997654322 44554433
No 74
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=85.24 E-value=0.26 Score=47.05 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=33.3
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccccccccccCCcc
Q 004844 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 673 (728)
Q Consensus 630 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEn 673 (728)
+.|..=++.=..||+|+||+|.||+.+|.-+--- .+-++.|..
T Consensus 139 ~~~~~~~~~l~~GD~i~i~~~~~H~~~n~~~~~~-~l~v~~~~~ 181 (192)
T 1y9q_A 139 VFFDEQWHELQQGEHIRFFSDQPHGYAAVTEKAV-FQNIVAYPR 181 (192)
T ss_dssp EEETTEEEEECTTCEEEEECSSSEEEEESSSCEE-EEEEEECCC
T ss_pred EEECCEEEEeCCCCEEEEcCCCCeEeECCCCCcE-EEEEEecCc
Confidence 4556667788999999999999999999855332 666777654
No 75
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=84.98 E-value=0.18 Score=41.62 Aligned_cols=28 Identities=29% Similarity=0.805 Sum_probs=22.0
Q ss_pred CCCCcccccchhhhhCCCCCHHHHHhhCCCCCC
Q 004844 13 KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 45 (728)
Q Consensus 13 ~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg 45 (728)
.|+ ..||..||.+|...-. ...||.||.
T Consensus 33 ~Cg-H~fC~~Ci~~~~~~~~----~~~CP~Cr~ 60 (74)
T 2yur_A 33 CCG-NSYCDECIRTALLESD----EHTCPTCHQ 60 (74)
T ss_dssp SSC-CEECTTHHHHHHHHSS----SSCCSSSCC
T ss_pred CCC-CHHHHHHHHHHHHhcC----CCcCCCCCC
Confidence 388 8999999999985310 257999998
No 76
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=84.70 E-value=0.31 Score=45.53 Aligned_cols=25 Identities=28% Similarity=0.237 Sum_probs=23.2
Q ss_pred eEEEeecCceeEecCCCcccccccc
Q 004844 635 WTFEQKLGEAVFIPAGCPHQVRNLK 659 (728)
Q Consensus 635 Wtf~Q~~GEAVFIPAGcPHQVrNL~ 659 (728)
-++.=..||+|+||+|.||+++|..
T Consensus 88 ~~~~l~~Gd~i~ip~~~~H~~~n~~ 112 (163)
T 1lr5_A 88 QEIPFFQNTTFSIPVNDPHQVWNSD 112 (163)
T ss_dssp EEEEECTTEEEEECTTCCEEEECCC
T ss_pred EEEEeCCCCEEEECCCCcEEeEeCC
Confidence 7788889999999999999999986
No 77
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=84.31 E-value=0.11 Score=42.85 Aligned_cols=36 Identities=28% Similarity=0.648 Sum_probs=25.4
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCcc
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 48 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~CN 48 (728)
..|+ ..||..||.+|+..-....-...||.||..-.
T Consensus 35 ~~Cg-H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 35 ADCN-HSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CTTS-CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CCCC-CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 4688 78999999999754211122568999987643
No 78
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=83.72 E-value=0.39 Score=42.51 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=24.5
Q ss_pred CccceEEEeecCceeEecCCCcccccccc
Q 004844 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLK 659 (728)
Q Consensus 631 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~ 659 (728)
.|..-++.=..||+|+||+|.||+.+|..
T Consensus 62 ~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~ 90 (125)
T 3cew_A 62 TIDGEKIELQAGDWLRIAPDGKRQISAAS 90 (125)
T ss_dssp EETTEEEEEETTEEEEECTTCCEEEEEBT
T ss_pred EECCEEEEeCCCCEEEECCCCcEEEEcCC
Confidence 34455677889999999999999999984
No 79
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=83.69 E-value=0.51 Score=43.47 Aligned_cols=25 Identities=40% Similarity=0.375 Sum_probs=21.9
Q ss_pred EEEeecCceeEecCCCccccccccc
Q 004844 636 TFEQKLGEAVFIPAGCPHQVRNLKS 660 (728)
Q Consensus 636 tf~Q~~GEAVFIPAGcPHQVrNL~S 660 (728)
++.=..||+|+||+|.||+++|..+
T Consensus 89 ~~~l~~Gd~i~ip~g~~H~~~n~~~ 113 (148)
T 2oa2_A 89 QEEVFDDYAILIPAGTWHNVRNTGN 113 (148)
T ss_dssp EEEEETTCEEEECTTCEEEEEECSS
T ss_pred eEEECCCCEEEECCCCcEEEEECCC
Confidence 3677899999999999999999754
No 80
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=83.48 E-value=0.41 Score=45.91 Aligned_cols=30 Identities=23% Similarity=0.008 Sum_probs=24.7
Q ss_pred CccceEEEeecCceeEecCCCccccccccc
Q 004844 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (728)
Q Consensus 631 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~S 660 (728)
-|..=++.=..||+|+||+|.||+++|..+
T Consensus 87 ~v~g~~~~l~~GD~i~ip~g~~H~~~n~~~ 116 (166)
T 3jzv_A 87 MVGRAVSAVAPYDLVTIPGWSWHQFRAPAD 116 (166)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEECCTT
T ss_pred EECCEEEEeCCCCEEEECCCCcEEeEeCCC
Confidence 344556777899999999999999999654
No 81
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=83.33 E-value=0.53 Score=43.74 Aligned_cols=41 Identities=20% Similarity=0.136 Sum_probs=30.6
Q ss_pred ccceEEEeecCceeEecCC-CccccccccccccccccccCCc
Q 004844 632 VEPWTFEQKLGEAVFIPAG-CPHQVRNLKSCTKVAVDFVSPE 672 (728)
Q Consensus 632 VepWtf~Q~~GEAVFIPAG-cPHQVrNL~SCIKVAlDFVSPE 672 (728)
|..=++.=..||+|+||+| .+|+++|.-+---+.+-+.+|-
T Consensus 83 ~~~~~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l~v~~p~ 124 (162)
T 3l2h_A 83 MENDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQRL 124 (162)
T ss_dssp ETTEEEEECTTCEEEECTTSCCEEEECCSSSCEEEEEEEECC
T ss_pred ECCEEEEeCCCCEEEECCCCceEEeEeCCCCCEEEEEEECCC
Confidence 4444677889999999998 9999999766444455555553
No 82
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=83.31 E-value=0.36 Score=42.96 Aligned_cols=33 Identities=30% Similarity=0.884 Sum_probs=26.0
Q ss_pred ceEecCCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 7 YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 7 ~vv~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
+.+....|+ ..||..||.+|... ...||.||..
T Consensus 90 ~~~~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~~ 122 (133)
T 4ap4_A 90 RLIVSTECG-HVFCSQCLRDSLKN------ANTCPTCRKK 122 (133)
T ss_dssp CCEEEETTS-BEEEHHHHHHHHHH------CSBCTTTCCB
T ss_pred cceEeCCCC-ChhhHHHHHHHHHc------CCCCCCCCCc
Confidence 345667888 88999999999742 4699999965
No 83
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=83.19 E-value=0.5 Score=45.16 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=42.1
Q ss_pred cCCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccccccccccCCccH
Q 004844 608 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENV 674 (728)
Q Consensus 608 ~dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV 674 (728)
.|.=+++.+|+-+-.- +.-|.+=++.=..||+||||+|.||..+|...|..+++ ++|-+.
T Consensus 80 ~~~~~eE~~yVLeG~~-----~l~i~g~~~~l~~GD~i~iP~G~~h~~~n~~~a~~l~V--~~P~~~ 139 (151)
T 4axo_A 80 WTLNYDEIDYVIDGTL-----DIIIDGRKVSASSGELIFIPKGSKIQFSVPDYARFIYV--TYPADW 139 (151)
T ss_dssp EECSSEEEEEEEEEEE-----EEEETTEEEEEETTCEEEECTTCEEEEEEEEEEEEEEE--EECSCC
T ss_pred EeCCCcEEEEEEEeEE-----EEEECCEEEEEcCCCEEEECCCCEEEEEeCCCEEEEEE--ECCCCc
Confidence 3444677777644321 12345567888999999999999999999988877766 445543
No 84
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.77 E-value=0.39 Score=38.80 Aligned_cols=31 Identities=26% Similarity=0.669 Sum_probs=23.5
Q ss_pred CCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCc
Q 004844 13 KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (728)
Q Consensus 13 ~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~C 47 (728)
.|+ ..||..||.+|...- .-...||+||..-
T Consensus 37 ~Cg-H~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 37 DCG-HNFCLKCITQIGETS---CGFFKCPLCKTSV 67 (73)
T ss_dssp TTC-CEEEHHHHHHHCSSS---CSCCCCSSSCCCC
T ss_pred CCC-ChhhHHHHHHHHHcC---CCCCCCCCCCCcC
Confidence 788 789999999998621 1135799999753
No 85
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=82.64 E-value=0.57 Score=42.14 Aligned_cols=31 Identities=23% Similarity=0.649 Sum_probs=23.8
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCcc
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 48 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~CN 48 (728)
..|+ ..||..||.+|...- ...||.||....
T Consensus 68 ~~Cg-H~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 68 TVCQ-HNVCKDCLDRSFRAQ-----VFSCPACRYDLG 98 (124)
T ss_dssp CTTS-CEEEHHHHHHHHHTT-----CCBCTTTCCBCC
T ss_pred eeCC-CcccHHHHHHHHhHC-----cCCCCCCCccCC
Confidence 3788 889999999998521 138999997654
No 86
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=82.58 E-value=0.44 Score=42.60 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=31.6
Q ss_pred cCCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccc
Q 004844 608 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (728)
Q Consensus 608 ~dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~S 660 (728)
.|+ ..+-+|+..-.- ++.+..=++.=..||+++||+|.||+.+|..+
T Consensus 65 ~H~-~~e~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~g~~H~~~~~~~ 111 (126)
T 1vj2_A 65 SHP-WEHEIFVLKGKL-----TVLKEQGEETVEEGFYIFVEPNEIHGFRNDTD 111 (126)
T ss_dssp CCS-SCEEEEEEESEE-----EEECSSCEEEEETTEEEEECTTCCEEEECCSS
T ss_pred eCC-CcEEEEEEEeEE-----EEEECCEEEEECCCCEEEECCCCcEEeEeCCC
Confidence 455 455555543321 13344445666799999999999999999864
No 87
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=82.25 E-value=0.59 Score=42.22 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=26.8
Q ss_pred ceEEEeecCceeEecCCCccccccc-cccccccccccCCc
Q 004844 634 PWTFEQKLGEAVFIPAGCPHQVRNL-KSCTKVAVDFVSPE 672 (728)
Q Consensus 634 pWtf~Q~~GEAVFIPAGcPHQVrNL-~SCIKVAlDFVSPE 672 (728)
+=++.=..||+|+||||.+|..+|. ..+. .+--++|-
T Consensus 76 g~~~~l~~GD~v~ip~g~~H~~~~~~~~~~--~l~v~~P~ 113 (119)
T 3lwc_A 76 GETVTAGPGEIVYMPKGETVTIRSHEEGAL--TAYVTYPH 113 (119)
T ss_dssp TEEEEECTTCEEEECTTCEEEEEEEEEEEE--EEEEEECC
T ss_pred CEEEEECCCCEEEECCCCEEEEEcCCCCeE--EEEEECCC
Confidence 4466778999999999999999997 3333 33445553
No 88
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.80 E-value=0.15 Score=42.12 Aligned_cols=35 Identities=23% Similarity=0.536 Sum_probs=24.5
Q ss_pred CCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCcc
Q 004844 13 KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 48 (728)
Q Consensus 13 ~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~CN 48 (728)
.|+ ..||..||.+|+..-....-...||+||..-.
T Consensus 36 ~Cg-H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 36 DCG-HSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp SSS-CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCC-CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 687 78999999999743111111568999998754
No 89
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.65 E-value=0.16 Score=41.00 Aligned_cols=28 Identities=32% Similarity=1.012 Sum_probs=22.4
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
..|+ ..||..||.+|... ...||.||..
T Consensus 30 ~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~~ 57 (70)
T 2ecn_A 30 LPCA-HSFCQKCIDKWSDR------HRNCPICRLQ 57 (70)
T ss_dssp ETTT-EEECHHHHHHSSCC------CSSCHHHHHC
T ss_pred cCCC-CcccHHHHHHHHHC------cCcCCCcCCc
Confidence 4577 67999999999873 5689999854
No 90
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=81.39 E-value=1.6 Score=38.35 Aligned_cols=57 Identities=14% Similarity=0.196 Sum_probs=35.8
Q ss_pred hCccceEEEeecCceeEecCCCcccccccc--ccccccccccCCccHHHHHHHHHHhhcCCcc
Q 004844 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLK--SCTKVAVDFVSPENVDECLRLTKEFRLLPKN 690 (728)
Q Consensus 630 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~--SCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~ 690 (728)
+-|..=++.=..||+++||+|.+|+++|.. .+.-+++ +++|+-+. .+..+...-|..
T Consensus 67 ~~i~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~i-~f~~~~~~---~~~~~~~~~~~~ 125 (128)
T 4i4a_A 67 IRINDEDFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTI-WWDKESTL---NFLTRLEQDHHH 125 (128)
T ss_dssp EEETTEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEE-EECHHHHH---HHHHHHHHC---
T ss_pred EEECCEEEEECCCcEEEECCCCcEEeEeCCCCCEEEEEE-EECHHHHH---HHHHhccccccc
Confidence 345555777899999999999999999973 2333343 34555444 455555554433
No 91
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=81.22 E-value=0.79 Score=40.94 Aligned_cols=61 Identities=23% Similarity=0.308 Sum_probs=39.6
Q ss_pred ccCCcCCcceeeCHHHHHHHHHHhCccc-eEEEeecCceeEecCCCccccccccccccccccccCCcc
Q 004844 607 VIHPIHDQCFYLSSEHKKKLKEEFGVEP-WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 673 (728)
Q Consensus 607 v~dPIHDQ~fYLt~~hk~kLkeEyGVep-Wtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEn 673 (728)
..|+-.++.+|+-.-.-. +-+.. -++.=..||+++||+|.||..+|..+-. ..+-+++|..
T Consensus 59 H~H~~~~E~~~vl~G~~~-----~~~~~~~~~~l~~Gd~~~ip~g~~H~~~~~~~~~-~~l~~~~p~~ 120 (134)
T 2o8q_A 59 HTHTVGFQLFYVLRGWVE-----FEYEDIGAVMLEAGGSAFQPPGVRHRELRHSDDL-EVLEIVSPAG 120 (134)
T ss_dssp EEECCSCEEEEEEESEEE-----EEETTTEEEEEETTCEEECCTTCCEEEEEECTTC-EEEEEESSTT
T ss_pred EECCCCcEEEEEEeCEEE-----EEECCcEEEEecCCCEEEECCCCcEEeEeCCCCe-EEEEEECCCc
Confidence 356655666665433221 33344 5677899999999999999999965422 3344556654
No 92
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.11 E-value=0.43 Score=39.80 Aligned_cols=33 Identities=24% Similarity=0.617 Sum_probs=24.4
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCcc
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 48 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~CN 48 (728)
..|+ ..||..||.+|...- .-...||+||..-.
T Consensus 35 ~~Cg-H~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 35 LHCG-HTICRQCLEKLLASS---INGVRCPFCSKITR 67 (88)
T ss_dssp CSSS-CEEEHHHHHHHHHHC---SSCBCCTTTCCCBC
T ss_pred CCCC-ChhhHHHHHHHHHcC---CCCcCCCCCCCccc
Confidence 4788 899999999997531 01357999998643
No 93
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=81.07 E-value=0.71 Score=44.87 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=30.5
Q ss_pred cceEEEeecCceeEecCCCccccccccccccccccccCCc
Q 004844 633 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (728)
Q Consensus 633 epWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (728)
+.+++.=..||+|+||+|.||+.+|.-+--=+.+.+++|.
T Consensus 117 ~~~~~~l~~GD~v~ip~g~~H~~~N~g~~~~~~l~v~~~~ 156 (190)
T 1x82_A 117 DAKWISMEPGTVVYVPPYWAHRTVNIGDEPFIFLAIYPAD 156 (190)
T ss_dssp CEEEEEECTTCEEEECTTCEEEEEECSSSCEEEEEEEETT
T ss_pred cEEEEEECCCcEEEECCCCeEEEEECCcccEEEEEEECCC
Confidence 4566888999999999999999999865433445555554
No 94
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=80.59 E-value=0.56 Score=42.91 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=25.3
Q ss_pred EEeecCceeEecCCCccccccccccccccc
Q 004844 637 FEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 666 (728)
Q Consensus 637 f~Q~~GEAVFIPAGcPHQVrNL~SCIKVAl 666 (728)
+.=..||+|+||+|.||..+|....-|+-+
T Consensus 89 ~~l~~GD~~~ip~g~~h~~~~~~~~rK~yv 118 (123)
T 3bcw_A 89 HAVKAGDAFIMPEGYTGRWEVDRHVKKIYF 118 (123)
T ss_dssp EEEETTCEEEECTTCCCEEEEEEEEEEEEE
T ss_pred EEECCCCEEEECCCCeEEEEECCceeEEEE
Confidence 445789999999999999999988777643
No 95
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=80.34 E-value=0.51 Score=41.82 Aligned_cols=30 Identities=33% Similarity=0.866 Sum_probs=23.7
Q ss_pred CCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCcc
Q 004844 13 KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 48 (728)
Q Consensus 13 ~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~CN 48 (728)
.|+ ..||..||.+|...- ...||+||..-.
T Consensus 32 ~Cg-H~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~ 61 (115)
T 3l11_A 32 PCN-HTLCKPCFQSTVEKA-----SLCCPFCRRRVS 61 (115)
T ss_dssp TTS-CEECHHHHCCCCCTT-----TSBCTTTCCBCH
T ss_pred CCC-CHHhHHHHHHHHhHC-----cCCCCCCCcccC
Confidence 788 889999999998642 267999987543
No 96
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=80.08 E-value=0.64 Score=46.16 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=34.2
Q ss_pred cCCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEecCCCcccccc-cccc
Q 004844 608 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRN-LKSC 661 (728)
Q Consensus 608 ~dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrN-L~SC 661 (728)
.|| +++.+|+-.-.- ++.|..=++.=..||+++||||+||.++| ...|
T Consensus 170 ~H~-~~e~~~Vl~G~~-----~~~i~g~~~~l~~Gd~i~ip~~~~H~~~~~~~~~ 218 (227)
T 3rns_A 170 KAP-GDALVTVLDGEG-----KYYVDGKPFIVKKGESAVLPANIPHAVEAETENF 218 (227)
T ss_dssp CCS-SEEEEEEEEEEE-----EEEETTEEEEEETTEEEEECTTSCEEEECCSSCE
T ss_pred ECC-CcEEEEEEeEEE-----EEEECCEEEEECCCCEEEECCCCcEEEEeCCCCE
Confidence 566 566666644322 24445556777899999999999999999 6654
No 97
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=80.06 E-value=0.9 Score=42.83 Aligned_cols=33 Identities=21% Similarity=0.613 Sum_probs=25.1
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCcccc
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCS 50 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~CNCk 50 (728)
+.|+ ..||..||.+|...- ...||.||....-.
T Consensus 94 ~~Cg-H~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 94 TECF-HNVCKDCLQRSFKAQ-----VFSCPACRHDLGQN 126 (150)
T ss_dssp CTTS-CEEEHHHHHHHHHTT-----CCBCTTTCCBCCTT
T ss_pred cCCC-CchhHHHHHHHHHhC-----CCcCCCCCccCCCC
Confidence 6888 789999999998631 13699999875543
No 98
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=79.56 E-value=0.33 Score=46.93 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=35.8
Q ss_pred cccCCcCCcceeeCH--HHHHHHHHHhCccceEEEeecCceeEecCCCcccccc
Q 004844 606 QVIHPIHDQCFYLSS--EHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRN 657 (728)
Q Consensus 606 ~v~dPIHDQ~fYLt~--~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrN 657 (728)
...|+-+++.||+-. ..- ++-|.+=++.=+.||+|+||+|.+|++++
T Consensus 60 ~H~H~~~~E~~yVLe~~G~g-----~v~idge~~~l~~GD~v~IPpg~~H~i~g 108 (157)
T 4h7l_A 60 THYHREHQEIYVVLDHAAHA-----TIELNGQSYPLTKLLAISIPPLVRHRIVG 108 (157)
T ss_dssp CBBCSSCEEEEEEEEECTTC-----EEEETTEEEECCTTEEEEECTTCCEEEES
T ss_pred ceECCCCcEEEEEEecCcEE-----EEEECCEEEEeCCCCEEEECCCCeEeeEC
Confidence 346777888888754 322 34556667888999999999999999985
No 99
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=79.43 E-value=0.46 Score=41.52 Aligned_cols=33 Identities=21% Similarity=0.741 Sum_probs=24.1
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCcc
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 48 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~CN 48 (728)
+.|+ ..||..||.+|...-+ -...||.||....
T Consensus 37 ~~Cg-H~fC~~Ci~~~~~~~~---~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 37 TKCD-HIFCKFCMLKLLNQKK---GPSQCPLCKNDIT 69 (112)
T ss_dssp CTTS-CCCCSHHHHHHHHSSS---SSCCCTTTSCCCC
T ss_pred CCCC-CHHHHHHHHHHHHhCC---CCCCCcCCCCcCC
Confidence 4788 8899999999986421 1147999987543
No 100
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=78.95 E-value=0.76 Score=43.83 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=32.2
Q ss_pred cCCcCCcceeeCHHHHHHHHHHhCccc----eEEEeecCceeEecCCCccccccc
Q 004844 608 IHPIHDQCFYLSSEHKKKLKEEFGVEP----WTFEQKLGEAVFIPAGCPHQVRNL 658 (728)
Q Consensus 608 ~dPIHDQ~fYLt~~hk~kLkeEyGVep----Wtf~Q~~GEAVFIPAGcPHQVrNL 658 (728)
.||- ++-+|+-.-.- ++.|.. =++.=..||+|+||+|.||+++|.
T Consensus 137 ~h~~-~E~~~Vl~G~~-----~~~~~~~~~~~~~~l~~GD~~~~~~~~~H~~~n~ 185 (198)
T 2bnm_A 137 GHAG-NEFLFVLEGEI-----HMKWGDKENPKEALLPTGASMFVEEHVPHAFTAA 185 (198)
T ss_dssp CCSS-CEEEEEEESCE-----EEEESCTTSCEEEEECTTCEEEECTTCCEEEEES
T ss_pred cCCC-eEEEEEEeeeE-----EEEECCcCCcccEEECCCCEEEeCCCCceEEEec
Confidence 4443 56666643321 244555 677888999999999999999998
No 101
>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3
Probab=78.74 E-value=0.69 Score=48.94 Aligned_cols=17 Identities=29% Similarity=0.651 Sum_probs=14.9
Q ss_pred eecCceeEecCCCcccc
Q 004844 639 QKLGEAVFIPAGCPHQV 655 (728)
Q Consensus 639 Q~~GEAVFIPAGcPHQV 655 (728)
=++|||+|||||.||=.
T Consensus 162 l~pGd~~~ipaGt~HA~ 178 (319)
T 1qwr_A 162 IKPGDFYYVPSGTLHAL 178 (319)
T ss_dssp CCTTCEEEECTTCCEEE
T ss_pred cCCCCEEEcCCCCceEe
Confidence 35899999999999973
No 102
>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3
Probab=78.01 E-value=0.75 Score=48.34 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.3
Q ss_pred EeecCceeEecCCCcccc
Q 004844 638 EQKLGEAVFIPAGCPHQV 655 (728)
Q Consensus 638 ~Q~~GEAVFIPAGcPHQV 655 (728)
.=++|||+|||||.||=.
T Consensus 161 ~l~pGd~~~ipaGt~HA~ 178 (300)
T 1zx5_A 161 ETTPYDTFVIRPGIPHAG 178 (300)
T ss_dssp ECCTTCEEEECTTCCEEE
T ss_pred ECCCCCEEEcCCCCceEc
Confidence 337899999999999963
No 103
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=77.91 E-value=0.69 Score=38.25 Aligned_cols=25 Identities=32% Similarity=0.740 Sum_probs=20.8
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
..|+-..||..|+.+| ..||+||..
T Consensus 40 ~pCgH~~~C~~C~~~~----------~~CP~Cr~~ 64 (74)
T 4ic3_A 40 VPCGHLVTCKQCAEAV----------DKCPMCYTV 64 (74)
T ss_dssp ETTCCBCCCHHHHTTC----------SBCTTTCCB
T ss_pred cCCCChhHHHHhhhcC----------ccCCCcCcC
Confidence 4788444999999999 789999964
No 104
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=77.72 E-value=1.1 Score=42.20 Aligned_cols=59 Identities=15% Similarity=0.109 Sum_probs=38.1
Q ss_pred CCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEecCC--CccccccccccccccccccCCc
Q 004844 609 HPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAG--CPHQVRNLKSCTKVAVDFVSPE 672 (728)
Q Consensus 609 dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAG--cPHQVrNL~SCIKVAlDFVSPE 672 (728)
|+-.++-+|+..-.- ++-|..=++.=..||+|+||+| .+|+++|.-+---+.+-+.+|-
T Consensus 62 H~~~eE~~~Vl~G~~-----~~~~~~~~~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~l~v~~p~ 122 (163)
T 3i7d_A 62 HMEQDEFVMVTEGAL-----VLVDDQGEHPMVPGDCAAFPAGDPNGHQFVNRTDAPATFLVVGTRT 122 (163)
T ss_dssp ESSCCEEEEEEESCE-----EEEETTEEEEECTTCEEEECTTCCCCBEEECCSSSCEEEEEEEECC
T ss_pred CCCCcEEEEEEECEE-----EEEECCEEEEeCCCCEEEECCCCCcceEEEECCCCCEEEEEEECCC
Confidence 443355566543322 1334455677889999999999 9999999866444445555543
No 105
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=77.69 E-value=0.87 Score=46.83 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=38.8
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccccccccccCCccHHHHHHH
Q 004844 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRL 680 (728)
Q Consensus 630 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rL 680 (728)
+-|..-++.=..||.++||+|+||+.+|... --..+-+++|....+-++-
T Consensus 252 ~~i~~~~~~l~~GD~~~ip~~~~H~~~n~~~-~~~~l~v~~~~~~~~~~~~ 301 (337)
T 1y3t_A 252 MWTDGQEIQLNPGDFLHVPANTVHSYRLDSH-YTKMVGVLVPGLFEPFFRT 301 (337)
T ss_dssp EEETTEEEEECTTCEEEECTTCCEEEEECSS-SEEEEEEEESSTTTHHHHH
T ss_pred EEECCEEEEECCCCEEEECCCCeEEEEECCC-CeEEEEEEcCccHHHHHHH
Confidence 4455567888999999999999999999876 3445566788888765543
No 106
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=77.63 E-value=1.3 Score=43.11 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=29.4
Q ss_pred eEEEeecCceeEecCCCccccccccccccccccccCCcc
Q 004844 635 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 673 (728)
Q Consensus 635 Wtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEn 673 (728)
.++.=..||+++||+|.+|..+|.-+---+.+-+.++.+
T Consensus 119 ~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~~~ 157 (201)
T 1fi2_A 119 YSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQN 157 (201)
T ss_dssp EEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEESSSC
T ss_pred EEEEECCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCC
Confidence 366778899999999999999998654444455555555
No 107
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=76.44 E-value=0.64 Score=38.18 Aligned_cols=29 Identities=17% Similarity=0.415 Sum_probs=23.2
Q ss_pred CCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCc
Q 004844 13 KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (728)
Q Consensus 13 ~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~C 47 (728)
.|+ ..||..||.+|...- ...||.||..-
T Consensus 25 ~Cg-H~fc~~Ci~~~~~~~-----~~~CP~C~~~~ 53 (78)
T 1t1h_A 25 STG-QTYERSSIQKWLDAG-----HKTCPKSQETL 53 (78)
T ss_dssp TTT-EEEEHHHHHHHHTTT-----CCBCTTTCCBC
T ss_pred CCC-CeecHHHHHHHHHHC-----cCCCCCCcCCC
Confidence 688 889999999999631 35799998653
No 108
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=76.29 E-value=1.3 Score=40.98 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=25.6
Q ss_pred EEeecCceeEecCCCccccccccccccccccccCC
Q 004844 637 FEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 671 (728)
Q Consensus 637 f~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSP 671 (728)
+.=..||+++||+|.||+.+|..+---+.+-++.|
T Consensus 89 ~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~~ 123 (147)
T 2f4p_A 89 RILKKGDVVEIPPNVVHWHGAAPDEELVHIGISTQ 123 (147)
T ss_dssp EEEETTCEEEECTTCCEEEEEBTTBCEEEEEEECC
T ss_pred EEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcc
Confidence 55679999999999999999986533333444443
No 109
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=76.17 E-value=0.67 Score=36.29 Aligned_cols=26 Identities=23% Similarity=0.677 Sum_probs=20.5
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCc
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~C 47 (728)
..|+ ..||..||.+| ...||+||..-
T Consensus 22 l~Cg-H~fC~~Ci~~~---------~~~CP~Cr~~~ 47 (56)
T 1bor_A 22 LPCL-HTLCSGCLEAS---------GMQCPICQAPW 47 (56)
T ss_dssp STTS-CCSBTTTCSSS---------SSSCSSCCSSS
T ss_pred cCCC-CcccHHHHccC---------CCCCCcCCcEe
Confidence 4677 78999999985 45799998753
No 110
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=76.03 E-value=0.65 Score=39.36 Aligned_cols=30 Identities=30% Similarity=0.758 Sum_probs=22.5
Q ss_pred CCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCc
Q 004844 13 KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (728)
Q Consensus 13 ~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~C 47 (728)
.|+ ..||..||.+|+..-. ...||.||...
T Consensus 31 ~Cg-H~fC~~Ci~~~~~~~~----~~~CP~Cr~~~ 60 (92)
T 3ztg_A 31 CCG-NSYCDECIRTALLESD----EHTCPTCHQND 60 (92)
T ss_dssp TTC-CEECHHHHHHHHHHCT----TCCCTTTCCSS
T ss_pred CCC-CHHHHHHHHHHHHhcC----CCcCcCCCCcC
Confidence 388 8899999999974211 25899999754
No 111
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=75.90 E-value=0.79 Score=41.14 Aligned_cols=32 Identities=28% Similarity=0.884 Sum_probs=25.4
Q ss_pred eEecCCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 8 VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 8 vv~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
.+.-..|+ ..|+..||.+|... ...||.||..
T Consensus 67 ~~~~~~C~-H~FH~~Ci~~Wl~~------~~~CP~Cr~~ 98 (106)
T 3dpl_R 67 TVAWGVCN-HAFHFHCISRWLKT------RQVCPLDNRE 98 (106)
T ss_dssp CEEEETTS-CEEEHHHHHHHHTT------CSBCSSSCSB
T ss_pred eEeecccC-cEECHHHHHHHHHc------CCcCcCCCCc
Confidence 34456788 88999999999764 4689999974
No 112
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=75.83 E-value=0.96 Score=40.92 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=25.4
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc
Q 004844 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (728)
Q Consensus 630 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~S 660 (728)
+.|..-++.=..||+++||+|.||+.+|..+
T Consensus 91 ~~i~~~~~~l~~Gd~i~i~~~~~H~~~n~~~ 121 (133)
T 1o4t_A 91 FHDNGKDVPIKAGDVCFTDSGESHSIENTGN 121 (133)
T ss_dssp EEETTEEEEEETTEEEEECTTCEEEEECCSS
T ss_pred EEECCEEEEeCCCcEEEECCCCcEEeEECCC
Confidence 3445567777899999999999999999753
No 113
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=74.11 E-value=1.1 Score=44.53 Aligned_cols=56 Identities=11% Similarity=0.063 Sum_probs=40.1
Q ss_pred CcccCCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccccccc
Q 004844 605 EQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 666 (728)
Q Consensus 605 ~~v~dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAl 666 (728)
....|| +++.+|+-.--- ++.|.+=+..=..||.++||||.||-++|+..|+=+..
T Consensus 51 ~~h~h~-~~~~~~Vl~G~~-----~~~i~~~~~~l~~Gd~~~~p~~~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 51 TAEAML-GNRYYYCFNGNG-----EIFIENNKKTISNGDFLEITANHNYSIEARDNLKLIEI 106 (227)
T ss_dssp EECSCS-SCEEEEEEESEE-----EEEESSCEEEEETTEEEEECSSCCEEEEESSSEEEEEE
T ss_pred CccccC-CCEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCCEEEEECCCcEEEEE
Confidence 344677 788877643321 23455556677889999999999999999988765544
No 114
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=73.99 E-value=0.5 Score=42.33 Aligned_cols=29 Identities=21% Similarity=0.509 Sum_probs=22.0
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
+.|+ ..||..||.+|...- ...||.||..
T Consensus 34 ~~Cg-H~fC~~Ci~~~~~~~-----~~~CP~Cr~~ 62 (118)
T 3hct_A 34 TPCG-HRFCKACIIKSIRDA-----GHKCPVDNEI 62 (118)
T ss_dssp CTTS-CEEEHHHHHHHHHHH-----CSBCTTTCCB
T ss_pred CCcC-ChhhHHHHHHHHhhC-----CCCCCCCCCC
Confidence 4788 889999999997421 1289999854
No 115
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=73.57 E-value=1 Score=45.51 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=32.8
Q ss_pred cCCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccc
Q 004844 608 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (728)
Q Consensus 608 ~dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~S 660 (728)
.|+-.++-+|+-.-.- ++.|..=++.=..||+|+||||+||+.+|.-+
T Consensus 196 ~H~~~~E~~~Vl~G~~-----~~~i~~~~~~l~~GD~i~~~~~~~H~~~n~g~ 243 (261)
T 1rc6_A 196 ETHVQEHGAYILSGQG-----VYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGR 243 (261)
T ss_dssp EEESSCEEEEEEESEE-----EEESSSCEEEEETTCEEEECSSEEEEEEEC--
T ss_pred cCCCceEEEEEEEeEE-----EEEECCEEEEeCCCCEEEECCCCcEEeEeCCC
Confidence 3444455666543221 34555667788999999999999999999854
No 116
>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*
Probab=73.16 E-value=1.2 Score=48.64 Aligned_cols=15 Identities=47% Similarity=0.738 Sum_probs=14.3
Q ss_pred ecCceeEecCCCccc
Q 004844 640 KLGEAVFIPAGCPHQ 654 (728)
Q Consensus 640 ~~GEAVFIPAGcPHQ 654 (728)
++|||+|||||.||=
T Consensus 245 ~pGd~~fipAG~~HA 259 (394)
T 2wfp_A 245 NPGEAMFLFAETPHA 259 (394)
T ss_dssp CTTCEEEECTTCCEE
T ss_pred CCCCEEEcCCCCceE
Confidence 789999999999996
No 117
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=72.84 E-value=1.2 Score=42.79 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.1
Q ss_pred ceEEEeecCceeEecCCCccccccccc
Q 004844 634 PWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (728)
Q Consensus 634 pWtf~Q~~GEAVFIPAGcPHQVrNL~S 660 (728)
.-++.=+.||+++||+|.||..+|.-+
T Consensus 82 ~~~~~l~~GDv~~~P~g~~H~~~N~g~ 108 (178)
T 1dgw_A 82 RDTYKLDQGDAIKIQAGTPFYLINPDN 108 (178)
T ss_dssp EEEEEEETTEEEEECTTCCEEEEECCS
T ss_pred cEEEEECCCCEEEECCCCeEEEEeCCC
Confidence 346677889999999999999999854
No 118
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=72.56 E-value=1.7 Score=40.15 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=28.1
Q ss_pred ccceEEEeecCceeEecCCCccccccccccccccc
Q 004844 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 666 (728)
Q Consensus 632 VepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAl 666 (728)
+.+=++.=+.||+++||+|.||..+|...+.++.+
T Consensus 90 ~~g~~~~l~~GD~i~~p~g~~h~~~~~~~~~~l~v 124 (133)
T 2pyt_A 90 HEGETMIAKAGDVMFIPKGSSIEFGTPTSVRFLYV 124 (133)
T ss_dssp ETTEEEEEETTCEEEECTTCEEEEEEEEEEEEEEE
T ss_pred ECCEEEEECCCcEEEECCCCEEEEEeCCCEEEEEE
Confidence 34456677899999999999999999877766554
No 119
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=72.52 E-value=0.64 Score=41.24 Aligned_cols=30 Identities=33% Similarity=0.945 Sum_probs=23.7
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCc
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~C 47 (728)
+.|+ ..||..||.+|...- ...||.||...
T Consensus 39 ~~Cg-H~fC~~Ci~~~~~~~-----~~~CP~Cr~~~ 68 (116)
T 1rmd_A 39 TSCK-HLFCRICILRCLKVM-----GSYCPSCRYPC 68 (116)
T ss_dssp CTTS-CEEEHHHHHHHHHHT-----CSBCTTTCCBC
T ss_pred cCCC-CcccHHHHHHHHhHC-----cCcCCCCCCCC
Confidence 5898 889999999997532 34799998753
No 120
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=72.23 E-value=1.1 Score=46.85 Aligned_cols=55 Identities=16% Similarity=0.232 Sum_probs=36.0
Q ss_pred EEEeecCceeEecCCCccccccccccccccccccCCccHHHHHHHHHHhhcCCccc
Q 004844 636 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNH 691 (728)
Q Consensus 636 tf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~H 691 (728)
++.=..||+++||+|.||+.+|.-+---+.+-+++|.+... +.|+.=++.+|.+-
T Consensus 279 ~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~v 333 (361)
T 2vqa_A 279 VSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQS-IDLSTWLASNPSSV 333 (361)
T ss_dssp EEEECTTCEEEECTTCEEEEECCSSSCEEEEEEESSSSCCC-EEHHHHHHTSCHHH
T ss_pred EEEECCCCEEEECCCCeEEeEECCCCCEEEEEEECCCCcce-eeHHHHhhhCCHHH
Confidence 56667899999999999999998653234455556554322 12344566676544
No 121
>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3
Probab=71.18 E-value=1.4 Score=48.84 Aligned_cols=16 Identities=44% Similarity=0.675 Sum_probs=14.6
Q ss_pred eecCceeEecCCCccc
Q 004844 639 QKLGEAVFIPAGCPHQ 654 (728)
Q Consensus 639 Q~~GEAVFIPAGcPHQ 654 (728)
=++|||+|||||.||=
T Consensus 270 L~pGea~flpAg~~HA 285 (440)
T 1pmi_A 270 LNKGEAMFLQAKDPHA 285 (440)
T ss_dssp ECTTCEEEECTTCCEE
T ss_pred cCCCCEEecCCCCccc
Confidence 5689999999999996
No 122
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=70.75 E-value=1.5 Score=43.85 Aligned_cols=48 Identities=23% Similarity=0.147 Sum_probs=34.3
Q ss_pred ccCCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeE-ecCCCccccccccc
Q 004844 607 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVF-IPAGCPHQVRNLKS 660 (728)
Q Consensus 607 v~dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVF-IPAGcPHQVrNL~S 660 (728)
..|| +.|-+|+-.--- ++-|..=++.=..||+|| ||+|.||+++|..+
T Consensus 50 H~H~-~~e~~~Vl~G~~-----~~~~~~~~~~l~~Gd~i~~ip~~~~H~~~n~~~ 98 (243)
T 3h7j_A 50 HQHK-EVQIGMVVSGEL-----MMTVGDVTRKMTALESAYIAPPHVPHGARNDTD 98 (243)
T ss_dssp ECCS-SEEEEEEEESEE-----EEEETTEEEEEETTTCEEEECTTCCEEEEECSS
T ss_pred EECC-CcEEEEEEEeEE-----EEEECCEEEEECCCCEEEEcCCCCcEeeEeCCC
Confidence 3566 677777644322 234445566778999997 99999999999877
No 123
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=70.74 E-value=1.5 Score=44.78 Aligned_cols=31 Identities=13% Similarity=0.314 Sum_probs=26.2
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc
Q 004844 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (728)
Q Consensus 630 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~S 660 (728)
+.|..-++.=..||+|+||||+||+.+|.-.
T Consensus 216 ~~i~~~~~~l~~GD~i~i~~~~~H~~~n~~~ 246 (274)
T 1sef_A 216 YNLDNEWYPVEKGDYIFMSAYVPQAAYAVGR 246 (274)
T ss_dssp EEETTEEEEEETTCEEEECTTCCEEEEEECS
T ss_pred EEECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 4555667788999999999999999999755
No 124
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=70.61 E-value=1.6 Score=44.88 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=34.8
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccccccccccCCccHHHHH
Q 004844 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECL 678 (728)
Q Consensus 630 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~ 678 (728)
+.|..-++.=..||.|+||+|.||..+|...- -..+.+++|....+-+
T Consensus 80 ~~~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~-~~~~~~~~p~~~~~~~ 127 (337)
T 1y3t_A 80 LTLDGERYLLISGDYANIPAGTPHSYRMQSHR-TRLVSYTMKGNVAHLY 127 (337)
T ss_dssp EEETTEEEEECTTCEEEECTTCCEEEEECSTT-EEEEEEEETTSSTHHH
T ss_pred EEECCEEEEECCCCEEEECCCCcEEEEECCCC-eEEEEEECCCCHHHHH
Confidence 34455677788999999999999999998762 2344556666665543
No 125
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=69.81 E-value=1.6 Score=38.32 Aligned_cols=29 Identities=14% Similarity=0.027 Sum_probs=24.1
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
..|+...||-.||.+|... ...||+||..
T Consensus 38 ~~cG~htf~r~cI~~~l~~------~~~cP~~~~~ 66 (98)
T 1wgm_A 38 LPSSRVTVDRSTIARHLLS------DQTDPFNRSP 66 (98)
T ss_dssp CTTTCCEEEHHHHHHHTTT------SCBCTTTCSB
T ss_pred CCCCCeEECHHHHHHHHHh------CCCCCCCCCC
Confidence 5788889999999999875 2589999854
No 126
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=69.45 E-value=1.6 Score=45.41 Aligned_cols=29 Identities=10% Similarity=0.264 Sum_probs=22.9
Q ss_pred hCccceEEEeecCceeEecCCCccccccc
Q 004844 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNL 658 (728)
Q Consensus 630 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL 658 (728)
|.+..=.+.=+.||++|||+||||+..|.
T Consensus 220 y~l~~~~~~V~~GD~i~~~~~~~h~~~n~ 248 (266)
T 4e2q_A 220 YRLGDNWYPVQAGDVIWMAPFVPQWYAAL 248 (266)
T ss_dssp EEETTEEEEEETTCEEEECTTCCEEEEEE
T ss_pred EEECCEEEEecCCCEEEECCCCcEEEEeC
Confidence 44444455667899999999999999886
No 127
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=69.42 E-value=2.3 Score=41.24 Aligned_cols=29 Identities=24% Similarity=0.115 Sum_probs=24.7
Q ss_pred ccceEEEeecCceeEecCCCccccccccc
Q 004844 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (728)
Q Consensus 632 VepWtf~Q~~GEAVFIPAGcPHQVrNL~S 660 (728)
|..=+|.=..||+++||||.||..+|.-+
T Consensus 125 l~g~~~~L~~Gds~~iP~g~~H~~~N~~d 153 (166)
T 2vpv_A 125 VCKNKFLSVKGSTFQIPAFNEYAIANRGN 153 (166)
T ss_dssp ETTEEEEEETTCEEEECTTCEEEEEECSS
T ss_pred ECCEEEEEcCCCEEEECCCCCEEEEECCC
Confidence 44457777899999999999999999765
No 128
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=69.35 E-value=0.97 Score=41.49 Aligned_cols=28 Identities=29% Similarity=0.978 Sum_probs=0.0
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
..|+ ..|+..||.+|... ...||.||..
T Consensus 82 ~~C~-H~FH~~CI~~Wl~~------~~~CP~Cr~~ 109 (117)
T 4a0k_B 82 GVCN-HAFHFHCISRWLKT------RQVCPLDNRE 109 (117)
T ss_dssp -----------------------------------
T ss_pred CCcC-ceEcHHHHHHHHHc------CCcCCCCCCe
Confidence 4687 88999999999764 4689999863
No 129
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=68.97 E-value=1.6 Score=46.43 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=49.5
Q ss_pred ccCCcCCcceeeCHHHHHHHHHHhCccc-----eEEEeecCceeEecCCCccccccccccccccccccCCccHHHHHHHH
Q 004844 607 VIHPIHDQCFYLSSEHKKKLKEEFGVEP-----WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLT 681 (728)
Q Consensus 607 v~dPIHDQ~fYLt~~hk~kLkeEyGVep-----Wtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLt 681 (728)
..|+-.++.||+-.-.- ++-|.. -++.=..||.|+||+|.||..+|.-+-. ..+-.++|....+-++-.
T Consensus 66 H~H~~~~E~~~Vl~G~~-----~~~v~~~~g~~~~~~L~~GD~v~ip~g~~H~~~n~~~~~-~~l~v~~p~~~~~~f~~l 139 (350)
T 1juh_A 66 HIHQKHYENFYCNKGSF-----QLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDT-EMTGVIVPGGFEDLFYYL 139 (350)
T ss_dssp EECSSCEEEEEEEESEE-----EEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECSTTE-EEEEEEESSCTTHHHHHH
T ss_pred ccCCCceEEEEEEEEEE-----EEEECCcCCceEEEEECCCCEEEECCCCcEEEEeCCCCC-EEEEEEcCccHHHHHHHh
Confidence 35666667777643322 244555 7788899999999999999999986544 667788888876665443
No 130
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Probab=68.76 E-value=2.6 Score=47.37 Aligned_cols=42 Identities=14% Similarity=0.239 Sum_probs=34.2
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc--cccccccccCC
Q 004844 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS--CTKVAVDFVSP 671 (728)
Q Consensus 630 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~S--CIKVAlDFVSP 671 (728)
.+-..+.++-.+||..|||.|.+|||+++-. ++.++.-+-.+
T Consensus 223 ~~~p~~e~~L~pGDvLYiP~g~~H~~~s~~~~~SlhlTi~~~~~ 266 (489)
T 4diq_A 223 LGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTLSTYQR 266 (489)
T ss_dssp CCCCSEEEEECTTCEEEECTTCEEEEEBCSSCCEEEEEEEECTT
T ss_pred ccCcceEEEECCCCEEEECCCCceEEEecCCCceEEEeecccCc
Confidence 3567789999999999999999999999954 56666666544
No 131
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.43 E-value=0.48 Score=37.40 Aligned_cols=27 Identities=30% Similarity=0.717 Sum_probs=20.1
Q ss_pred CCCCcccccchhhhhCCCCCHHHHHhhCCCC
Q 004844 13 KCRTKVYCIQCIKQWYPKMSELDVAEICPFC 43 (728)
Q Consensus 13 ~C~rk~fC~~CI~~wYp~lt~~di~~~CP~C 43 (728)
.|+ ..||..||.+|... ..-...||.|
T Consensus 37 ~Cg-H~fC~~Ci~~~~~~---~~~~~~CP~C 63 (63)
T 2ysj_A 37 DCG-HNFCLKCITQIGET---SCGFFKCPLC 63 (63)
T ss_dssp TTS-SEECHHHHHHHHHH---CSSCCCCSCC
T ss_pred CCC-CcchHHHHHHHHHc---CCCCCcCcCC
Confidence 788 78999999999852 0123479988
No 132
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}
Probab=67.98 E-value=2.7 Score=46.54 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=27.4
Q ss_pred hCccceEEEeecCceeEecCCCcccccccc
Q 004844 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLK 659 (728)
Q Consensus 630 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~ 659 (728)
+|...+.++=.+||+.|||+|.+|+|+++.
T Consensus 194 ~~~~~~~~~L~pGD~LYiP~g~~H~~~s~~ 223 (442)
T 2xdv_A 194 IGRPVHEFMLKPGDLLYFPRGTIHQADTPA 223 (442)
T ss_dssp SCSCSEEEEECTTCEEEECTTCEEEEECCS
T ss_pred cCCcceEEEECCCcEEEECCCceEEEEecC
Confidence 566778999999999999999999999986
No 133
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=66.83 E-value=1.8 Score=45.98 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=23.0
Q ss_pred ceEEEeecCceeEecCCCccccccccc
Q 004844 634 PWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (728)
Q Consensus 634 pWtf~Q~~GEAVFIPAGcPHQVrNL~S 660 (728)
.-++.=..||+++||+|.||+++|.-+
T Consensus 300 ~~~~~l~~GD~~~ip~~~~H~~~n~~~ 326 (385)
T 1j58_A 300 ARTFNYQAGDVGYVPFAMGHYVENIGD 326 (385)
T ss_dssp EEEEEEESSCEEEECTTCBEEEEECSS
T ss_pred EEEEEEcCCCEEEECCCCeEEEEECCC
Confidence 346667799999999999999999854
No 134
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=66.50 E-value=2.5 Score=45.15 Aligned_cols=40 Identities=15% Similarity=0.027 Sum_probs=30.2
Q ss_pred ccceEEEeecCceeEecCCCccccccccccccccccccCC
Q 004844 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 671 (728)
Q Consensus 632 VepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSP 671 (728)
|.+=++.=..||+|+||+|.+|+.+|.-+---+-++|..|
T Consensus 136 v~g~~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l~v~d~ 175 (354)
T 2d40_A 136 VDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLDL 175 (354)
T ss_dssp ETTEEEECCTTCEEEECTTSCEEEECCSSSCEEEEEEECH
T ss_pred ECCEEEEEcCCCEEEECCCCcEEeEeCCCCCEEEEEEECc
Confidence 4556788889999999999999999985432234566544
No 135
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=66.39 E-value=0.77 Score=42.92 Aligned_cols=30 Identities=20% Similarity=0.589 Sum_probs=23.3
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCc
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~C 47 (728)
+.|+ ..||..||.+|...- ...||.||...
T Consensus 47 ~~Cg-H~FC~~Ci~~~~~~~-----~~~CP~Cr~~~ 76 (141)
T 3knv_A 47 AQCG-HRYCSFCLASILSSG-----PQNCAACVHEG 76 (141)
T ss_dssp CTTS-CEEEHHHHHHHGGGS-----CEECHHHHHTT
T ss_pred CCCC-CccCHHHHHHHHhcC-----CCCCCCCCCcc
Confidence 5898 889999999998521 24799988754
No 136
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.45 E-value=2.2 Score=35.09 Aligned_cols=25 Identities=32% Similarity=0.740 Sum_probs=19.4
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
..|+-..||..|+++. ..||+||..
T Consensus 41 ~pCgH~~~C~~C~~~~----------~~CP~Cr~~ 65 (75)
T 2ecg_A 41 VPCGHLVTCKQCAEAV----------DKCPMCYTV 65 (75)
T ss_dssp SSSCCCCBCHHHHHHC----------SBCTTTCCB
T ss_pred ecCCCHHHHHHHhhCC----------CCCccCCce
Confidence 5788334999999753 689999975
No 137
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=65.26 E-value=1.9 Score=36.49 Aligned_cols=30 Identities=23% Similarity=0.609 Sum_probs=23.6
Q ss_pred CCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCcc
Q 004844 13 KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 48 (728)
Q Consensus 13 ~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~CN 48 (728)
.|+ ..||..||.++... -...||.||..-.
T Consensus 32 ~CG-H~fC~~Cl~~~~~~-----~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 32 TCG-YQICRFCWHRIRTD-----ENGLCPACRKPYP 61 (78)
T ss_dssp TTS-CCCCHHHHHHHTTS-----SCSBCTTTCCBCS
T ss_pred CCC-CCcCHHHHHHHHhc-----CCCCCCCCCCccC
Confidence 588 78999999998643 1368999998754
No 138
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=65.21 E-value=2.1 Score=44.05 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=25.4
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc
Q 004844 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (728)
Q Consensus 630 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~S 660 (728)
+.|..=++.=..||+++||||.||+++|.-+
T Consensus 103 v~v~g~~~~L~~GD~i~ip~~~~H~~~N~g~ 133 (278)
T 1sq4_A 103 LTLQGQVHAMQPGGYAFIPPGADYKVRNTTG 133 (278)
T ss_dssp EEESSCEEEECTTEEEEECTTCCEEEECCSS
T ss_pred EEECCEEEEECCCCEEEECCCCcEEEEECCC
Confidence 3445557788899999999999999999843
No 139
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=63.96 E-value=3.2 Score=45.07 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=24.8
Q ss_pred ccceEEEeecCceeEecCCCcccccccc
Q 004844 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLK 659 (728)
Q Consensus 632 VepWtf~Q~~GEAVFIPAGcPHQVrNL~ 659 (728)
|.+=++.=..||+|+||+|..|++.|--
T Consensus 139 vdG~~~~~~~GD~v~iP~g~~H~~~N~g 166 (368)
T 3nw4_A 139 VNGDPVRMSRGDLLLTPGWCFHGHMNDT 166 (368)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEEECS
T ss_pred ECCEEEEEeCCCEEEECCCCcEEeEeCC
Confidence 5666888999999999999999999953
No 140
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=63.57 E-value=3.1 Score=45.43 Aligned_cols=29 Identities=21% Similarity=0.094 Sum_probs=25.7
Q ss_pred CccceEEEeecCceeEecCCCcccccccc
Q 004844 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLK 659 (728)
Q Consensus 631 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~ 659 (728)
-|.+-++.-..||+||||+|.+||+.|.-
T Consensus 328 ~V~ge~~~~~~GD~~~iP~g~~H~~~N~g 356 (394)
T 3bu7_A 328 IVGGKRFDWSEHDIFCVPAWTWHEHCNTQ 356 (394)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEEECC
T ss_pred EECCEEEEEeCCCEEEECCCCeEEeEeCC
Confidence 35677899999999999999999999964
No 141
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=62.80 E-value=2.6 Score=42.36 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=25.9
Q ss_pred HhCccceEEEeecCceeEecCCCccccccccc
Q 004844 629 EFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (728)
Q Consensus 629 EyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~S 660 (728)
+|-+..=++.=..||.+|++||+||+.+|.-.
T Consensus 198 ~~~~~~~~~~l~~GD~~~~~~~~pH~~~n~g~ 229 (246)
T 1sfn_A 198 LYKLEENYYPVTAGDIIWMGAHCPQWYGALGR 229 (246)
T ss_dssp EEEETTEEEEEETTCEEEECTTCCEEEEEESS
T ss_pred EEEECCEEEEcCCCCEEEECCCCCEEEEcCCC
Confidence 45566666677899999999999999999643
No 142
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A
Probab=60.98 E-value=5.2 Score=39.07 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=36.1
Q ss_pred cCCcCCcceeeCHHHHHHHHHHhCc--cc--eEEEeecCceeEecCCCccccccccccccccccccCCc
Q 004844 608 IHPIHDQCFYLSSEHKKKLKEEFGV--EP--WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (728)
Q Consensus 608 ~dPIHDQ~fYLt~~hk~kLkeEyGV--ep--Wtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (728)
.||- ++-+|+....-. |.| .. +++.=..||.|+||||.||...+-..--=+|+.|-+++
T Consensus 97 ~H~~-~Ei~~Vl~G~g~-----~~i~~~d~~~~~~l~~GDli~IP~g~~H~~~~~~~~~~~~ir~F~~~ 159 (179)
T 1zrr_A 97 THGE-DEVRFFVEGAGL-----FCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNP 159 (179)
T ss_dssp EESS-CEEEEEEESCCC-----CCEECSSCEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECCG
T ss_pred ECCh-heEEEEEcceEE-----EEEEeCCEEEEEEECCCCEEEECCCCeEeeecCCCceEEEEEeccCC
Confidence 5563 566655433221 434 22 24556899999999999999888665323345444444
No 143
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=58.83 E-value=3.2 Score=41.72 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=25.0
Q ss_pred CccceEEEeecCceeEecCCCcccccccccc
Q 004844 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSC 661 (728)
Q Consensus 631 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~SC 661 (728)
.|..=++.=..||+++||||.||+++|...+
T Consensus 82 ~~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~ 112 (246)
T 1sfn_A 82 AVGGETRTLREYDYVYLPAGEKHMLTAKTDA 112 (246)
T ss_dssp ECSSCEEEECTTEEEEECTTCCCEEEEEEEE
T ss_pred EECCEEEEECCCCEEEECCCCCEEEEeCCCE
Confidence 3444566778899999999999999998544
No 144
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=58.71 E-value=2.8 Score=36.93 Aligned_cols=28 Identities=14% Similarity=0.097 Sum_probs=22.7
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
..|+ ..||-.||.+|... ...||+|+..
T Consensus 45 ~~cG-htf~r~~I~~~l~~------~~~cP~~~~~ 72 (100)
T 2kre_A 45 LPSG-TIMDRSIILRHLLN------SPTDPFNRQT 72 (100)
T ss_dssp ETTT-EEEEHHHHHHHTTS------CSBCSSSCCB
T ss_pred CCCC-CEEchHHHHHHHHc------CCCCCCCCCC
Confidence 3587 77999999999974 2689999864
No 145
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=58.17 E-value=5.5 Score=34.12 Aligned_cols=39 Identities=28% Similarity=0.869 Sum_probs=28.4
Q ss_pred ccccCCCCce-ecCCcccccc----cccccCCCCCcccchhchH
Q 004844 115 ETLCGNDERV-YCNHCATSII----DLHRSCPKCSYELCLTCCK 153 (728)
Q Consensus 115 ~a~~~~DER~-~CD~C~tSI~----D~HRsC~~CsydLCL~CC~ 153 (728)
++.+..+.++ +|-+|.+.|. .....|+.|++.+|..|-.
T Consensus 16 e~~v~~~~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~ 59 (86)
T 2ct7_A 16 EGVLMRDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKR 59 (86)
T ss_dssp CSCCCSCCCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCS
T ss_pred HHHHhcCCCEeECcCCCchheecCCCCceEeCCCCCccccccCC
Confidence 3444445544 6999999764 3446899999999999964
No 146
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=57.36 E-value=3.5 Score=34.65 Aligned_cols=26 Identities=35% Similarity=0.819 Sum_probs=20.9
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCc
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~C 47 (728)
..|+=..||..|+.+|. .||+||..-
T Consensus 34 ~pCgH~~~C~~C~~~~~----------~CP~Cr~~i 59 (79)
T 2yho_A 34 CPCGHTVCCESCAAQLQ----------SCPVCRSRV 59 (79)
T ss_dssp ETTCBCCBCHHHHTTCS----------BCTTTCCBC
T ss_pred ECCCCHHHHHHHHHhcC----------cCCCCCchh
Confidence 46884459999999983 999999864
No 147
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=57.23 E-value=2.7 Score=44.00 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=22.2
Q ss_pred eEEEeecCceeEecCCCcccccccc
Q 004844 635 WTFEQKLGEAVFIPAGCPHQVRNLK 659 (728)
Q Consensus 635 Wtf~Q~~GEAVFIPAGcPHQVrNL~ 659 (728)
-++.=..||+++||+|.||..+|.-
T Consensus 96 ~~~~l~~GD~~~ip~g~~H~~~n~~ 120 (361)
T 2vqa_A 96 EIADVDKGGLWYFPRGWGHSIEGIG 120 (361)
T ss_dssp EEEEEETTEEEEECTTCEEEEEECS
T ss_pred EEEEEcCCCEEEECCCCeEEEEeCC
Confidence 4567778999999999999999986
No 148
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=56.92 E-value=4 Score=45.78 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=24.2
Q ss_pred ecCceeEecCCCccccccccccccccccccC
Q 004844 640 KLGEAVFIPAGCPHQVRNLKSCTKVAVDFVS 670 (728)
Q Consensus 640 ~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVS 670 (728)
+.||+|+||||.||-..|.-+--=|++-++.
T Consensus 118 ~~GDvi~iPaG~~h~~~N~g~~~l~~v~~~d 148 (493)
T 2d5f_A 118 NEGDVLVIPPGVPYWTYNTGDEPVVAISLLD 148 (493)
T ss_dssp ETTEEEEECTTCCEEEEECSSSCEEEEEEEC
T ss_pred cCCCEEEECCCCcEEEEeCCCCCEEEEEEec
Confidence 6799999999999999999774444444444
No 149
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.85 E-value=5.1 Score=33.87 Aligned_cols=34 Identities=18% Similarity=0.648 Sum_probs=26.6
Q ss_pred EecCCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCc
Q 004844 9 VPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (728)
Q Consensus 9 v~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~C 47 (728)
++|..|+ .+|=..||.+|+..-. ...||.||...
T Consensus 29 ~~C~~C~-h~fH~~Ci~kWl~~~~----~~~CP~Cr~~w 62 (74)
T 2ct0_A 29 QSCETCG-IRMHLPCVAKYFQSNA----EPRCPHCNDYW 62 (74)
T ss_dssp EECSSSC-CEECHHHHHHHSTTCS----SCCCTTTCSCC
T ss_pred CccCCCC-chhhHHHHHHHHHhcC----CCCCCCCcCcC
Confidence 5788998 7788999999996432 26899998654
No 150
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=56.84 E-value=3.6 Score=41.72 Aligned_cols=46 Identities=22% Similarity=0.352 Sum_probs=30.8
Q ss_pred cCCcCCcceeeCHHHHHHHHHHhCcc-ceEEEeecCceeEecCCCcccccccc
Q 004844 608 IHPIHDQCFYLSSEHKKKLKEEFGVE-PWTFEQKLGEAVFIPAGCPHQVRNLK 659 (728)
Q Consensus 608 ~dPIHDQ~fYLt~~hk~kLkeEyGVe-pWtf~Q~~GEAVFIPAGcPHQVrNL~ 659 (728)
.|| ++|.+|+=... -||.|+ .=++.=..||.||||+|.||.+|+..
T Consensus 149 sHp-~EEiy~VLsG~-----~e~~v~~g~~~~l~pGd~v~ipsgv~Ha~rt~d 195 (217)
T 4b29_A 149 EHL-PEELYSVVSGR-----ALFHLRNAPDLMLEPGQTRFHPANAPHAMTTLT 195 (217)
T ss_dssp ECS-SEEEEEEEEEC-----EEEEETTSCCEEECTTCEEEECTTCCEEEECCS
T ss_pred CCC-CceEEEEEeCC-----EEEEECCCCEEecCCCCEEEcCCCCceeEEECC
Confidence 666 45655542111 135555 45566789999999999999998743
No 151
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=55.96 E-value=4.4 Score=39.36 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=26.1
Q ss_pred EEEeecCceeEecCCCccccccccccccccccccCC
Q 004844 636 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 671 (728)
Q Consensus 636 tf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSP 671 (728)
++.=+.||++ ||+|.||+.+|.-+---..+-.++|
T Consensus 119 ~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V~~P 153 (172)
T 3es1_A 119 KRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFILIE 153 (172)
T ss_dssp EEEECTTCEE-EECSCCBEEECCSSSCEEEEEEEEE
T ss_pred EEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEEEcC
Confidence 4556899999 9999999999986654444444444
No 152
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=55.23 E-value=2 Score=40.63 Aligned_cols=29 Identities=21% Similarity=0.509 Sum_probs=22.0
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
+.|+ ..||..||.+|...- ...||.||..
T Consensus 34 ~~Cg-H~fC~~Ci~~~~~~~-----~~~CP~Cr~~ 62 (170)
T 3hcs_A 34 TPCG-HRFCKACIIKSIRDA-----GHKCPVDNEI 62 (170)
T ss_dssp CTTS-CEEEHHHHHHHHHHH-----CSBCTTTCCB
T ss_pred CCCC-CHHHHHHHHHHHHhC-----CCCCCCCccC
Confidence 4798 889999999997421 1289999754
No 153
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=54.19 E-value=4.1 Score=42.31 Aligned_cols=24 Identities=8% Similarity=0.295 Sum_probs=20.7
Q ss_pred EEEeecCceeEecCCCcccccccc
Q 004844 636 TFEQKLGEAVFIPAGCPHQVRNLK 659 (728)
Q Consensus 636 tf~Q~~GEAVFIPAGcPHQVrNL~ 659 (728)
++.=..||++++|||.|||++|-.
T Consensus 110 ~~~L~~Gds~y~p~~~~H~~~N~~ 133 (266)
T 4e2q_A 110 SKKLTVDSYAYLPPNFHHSLDCVE 133 (266)
T ss_dssp CEEECTTEEEEECTTCCCEEEESS
T ss_pred EEEEcCCCEEEECCCCCEEEEeCC
Confidence 455678999999999999999954
No 154
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=54.14 E-value=4.2 Score=45.24 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=25.5
Q ss_pred eecCceeEecCCCccccccccccccccccccCCc
Q 004844 639 QKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (728)
Q Consensus 639 Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (728)
=+.||+++||||.||-..|.-+--=+++-++++-
T Consensus 131 l~~GDv~~iPaG~~H~~~N~g~~~l~~l~~~d~~ 164 (459)
T 2e9q_A 131 FREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTR 164 (459)
T ss_dssp EETTEEEEECTTCCEEEEECSSSCEEEEEEEESS
T ss_pred ecCCCEEEECCCCCEEEEeCCCCCEEEEEEecCC
Confidence 3579999999999999999976544555444433
No 155
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6
Probab=53.58 E-value=7.3 Score=38.59 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=28.6
Q ss_pred EEEeecCceeEecCCCccccccccccccccccccCCcc
Q 004844 636 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 673 (728)
Q Consensus 636 tf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEn 673 (728)
++.=..||.|+||||.||...+-.+--=+|+.|.+++-
T Consensus 128 ~i~v~~GDlIiIPaG~~H~f~~~~~~~~~airlF~~~~ 165 (191)
T 1vr3_A 128 RISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGEP 165 (191)
T ss_dssp EEEEETTEEEEECTTCCEEEEECTTCCEEEEEEESSSC
T ss_pred EEEECCCCEEEECcCCcCCcccCCCCCEEEEEEECCCC
Confidence 67778999999999999998876554334666666553
No 156
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=52.98 E-value=4.7 Score=40.99 Aligned_cols=31 Identities=13% Similarity=0.079 Sum_probs=25.0
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc
Q 004844 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (728)
Q Consensus 630 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~S 660 (728)
..|..=++.=..||++++|||.||+.+|.-+
T Consensus 97 ~~~~~~~~~L~~GD~~~~~~~~~H~~~N~~~ 127 (274)
T 1sef_A 97 VSDGQETHELEAGGYAYFTPEMKMYLANAQE 127 (274)
T ss_dssp EECSSCEEEEETTEEEEECTTSCCEEEESSS
T ss_pred EEECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 3344456777899999999999999999854
No 157
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=52.91 E-value=6.1 Score=39.74 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=24.6
Q ss_pred CccceEEEeecCceeEecCCCccccccccc
Q 004844 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (728)
Q Consensus 631 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~S 660 (728)
.|..=++.=..||++++|||.||+.+|.-+
T Consensus 95 ~~~~~~~~L~~Gd~~~~~~~~~H~~~N~~~ 124 (261)
T 1rc6_A 95 KAEGKTFALSEGGYLYCPPGSLMTFVNAQA 124 (261)
T ss_dssp EETTEEEEEETTEEEEECTTCCCEEEECSS
T ss_pred EECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 344556777899999999999999999844
No 158
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=52.75 E-value=4.3 Score=41.76 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=25.8
Q ss_pred HhCccceEEEeecCceeEecCCCccccccccc
Q 004844 629 EFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (728)
Q Consensus 629 EyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~S 660 (728)
+|-+..=++.=..||.+|+|+||||+.+|.-.
T Consensus 224 ~~~~~~~~~~v~~GD~~~~~~~~~h~~~n~g~ 255 (278)
T 1sq4_A 224 VYRLNQDWVEVEAGDFMWLRAFCPQACYSGGP 255 (278)
T ss_dssp EEEETTEEEEEETTCEEEEEESCCEEEECCSS
T ss_pred EEEECCEEEEeCCCCEEEECCCCCEEEEcCCC
Confidence 35555666777899999999999999999644
No 159
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=52.25 E-value=2.6 Score=38.06 Aligned_cols=34 Identities=26% Similarity=0.656 Sum_probs=24.7
Q ss_pred CCCceEecCCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 4 ERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 4 d~~~vv~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
.+||++.|. ..||.+|+..|...- .+.||.|+..
T Consensus 13 iygRmIPCk----HvFCydCa~~~~~~~-----~k~Cp~C~~~ 46 (101)
T 3vk6_A 13 VYGRMIPCK----HVFCYDCAILHEKKG-----DKMCPGCSDP 46 (101)
T ss_dssp EEEEEETTC----CEEEHHHHHHHHHTT-----CCBCTTTCCB
T ss_pred EEeeecccc----ccHHHHHHHHHHhcc-----CCCCcCcCCe
Confidence 357788876 589999999985321 2579998863
No 160
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=51.62 E-value=2.7 Score=35.76 Aligned_cols=28 Identities=18% Similarity=0.069 Sum_probs=22.3
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
..|+ ..||-.||.+|... ...||+|+..
T Consensus 30 ~~cG-htf~r~~I~~~l~~------~~~cP~~~~~ 57 (85)
T 2kr4_A 30 LPSG-TVMDRSIILRHLLN------SPTDPFNRQM 57 (85)
T ss_dssp CTTS-CEEEHHHHHHHHHH------CSBCTTTCCB
T ss_pred CCCC-CEECHHHHHHHHhc------CCCCCCCcCC
Confidence 4587 77999999999853 3689999854
No 161
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=50.40 E-value=7.3 Score=41.48 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=24.3
Q ss_pred ccceEEEeecCceeEecCCCccccccc
Q 004844 632 VEPWTFEQKLGEAVFIPAGCPHQVRNL 658 (728)
Q Consensus 632 VepWtf~Q~~GEAVFIPAGcPHQVrNL 658 (728)
|.+-+|.=..||+++||+|++||++|-
T Consensus 303 v~~~~~~~~~GD~~~vP~~~~H~~~n~ 329 (354)
T 2d40_A 303 IGNETFSFSAKDIFVVPTWHGVSFQTT 329 (354)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEEEE
T ss_pred ECCEEEEEcCCCEEEECCCCeEEEEeC
Confidence 457888999999999999999999994
No 162
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=49.52 E-value=5.9 Score=44.73 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=26.0
Q ss_pred ecCceeEecCCCccccccccccccccccccCCcc
Q 004844 640 KLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 673 (728)
Q Consensus 640 ~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEn 673 (728)
+.||+|.||||.||-..|.-+--=||+-++.+-|
T Consensus 131 ~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d~~n 164 (510)
T 3c3v_A 131 NEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNN 164 (510)
T ss_dssp CTTEEEEECTTCEEEEEECSSSCEEEEEEECTTB
T ss_pred cCCCEEEECCCCCEEEEeCCCCCEEEEEEeCCCC
Confidence 5699999999999999999765555544444444
No 163
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=48.36 E-value=7.9 Score=42.26 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=24.5
Q ss_pred CccceEEEeecCceeEecCCCcccccc
Q 004844 631 GVEPWTFEQKLGEAVFIPAGCPHQVRN 657 (728)
Q Consensus 631 GVepWtf~Q~~GEAVFIPAGcPHQVrN 657 (728)
-|.+=++.-..||+|+||+|..|+.+|
T Consensus 158 ~v~G~~~~~~~GD~i~~P~g~~H~~~N 184 (394)
T 3bu7_A 158 IVDGHKVELGANDFVLTPNGTWHEHGI 184 (394)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEEE
T ss_pred EECCEEEEEcCCCEEEECcCCCEEEEc
Confidence 456668999999999999999999999
No 164
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=47.52 E-value=9.4 Score=34.25 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=23.9
Q ss_pred hCccceEEEeecCceeEecCCCcccccccc
Q 004844 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLK 659 (728)
Q Consensus 630 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~ 659 (728)
+-|..=++.=..||++|||+|.+|+.++-.
T Consensus 51 ~~i~~~~~~l~~Gd~~~i~p~~~H~~~~~~ 80 (164)
T 2arc_A 51 VKNQGREFVCRPGDILLFPPGEIHHYGRHP 80 (164)
T ss_dssp EEETTEEEEECTTCEEEECTTCCEEEEECT
T ss_pred EEECCEEEEecCCeEEEEcCCCCEEEEeCC
Confidence 344555667789999999999999988764
No 165
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=47.27 E-value=6.7 Score=43.77 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=22.7
Q ss_pred EEeecCceeEecCCCcccccccccccccc
Q 004844 637 FEQKLGEAVFIPAGCPHQVRNLKSCTKVA 665 (728)
Q Consensus 637 f~Q~~GEAVFIPAGcPHQVrNL~SCIKVA 665 (728)
..=+.||+|+||||.||-..|.-+--=++
T Consensus 115 ~~l~~GDvi~iPaG~~h~~~N~G~~~l~~ 143 (476)
T 1fxz_A 115 YNFREGDLIAVPTGVAWWMYNNEDTPVVA 143 (476)
T ss_dssp EEECTTEEEEECTTCEEEEEECSSSCEEE
T ss_pred EEEeCCCEEEECCCCcEEEEeCCCCCEEE
Confidence 34467999999999999999997543344
No 166
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}
Probab=45.54 E-value=8.6 Score=36.94 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=28.9
Q ss_pred ecCceeEecCCCcccccccc----cccccc-----ccccCCc
Q 004844 640 KLGEAVFIPAGCPHQVRNLK----SCTKVA-----VDFVSPE 672 (728)
Q Consensus 640 ~~GEAVFIPAGcPHQVrNL~----SCIKVA-----lDFVSPE 672 (728)
..||.+++|+|-+|++.+.. -||-++ +-|+.|.
T Consensus 85 ~aGd~~~~P~g~~H~~~a~~~~~~gci~l~v~~GpL~~~~~~ 126 (165)
T 3cjx_A 85 TAGCYLYEPGGSIHQFNTPRDNEGQTEVIFMLSGCNVNFTQD 126 (165)
T ss_dssp ETTEEEEECTTCEECEECCTTCSSCEEEEEEEESCEEEECTT
T ss_pred CCCeEEEeCCCCceeeEeCCCCCCCcEEEEEEeccceecCCC
Confidence 68999999999999999998 897777 6787775
No 167
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=45.00 E-value=6.3 Score=39.17 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=22.4
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCc
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~C 47 (728)
+.|+ ..||-.||.+|...- ...||+||...
T Consensus 224 ~~~g-h~f~~~~i~~~~~~~-----~~~cP~~~~~~ 253 (281)
T 2c2l_A 224 TPSG-ITYDRKDIEEHLQRV-----GHFNPVTRSPL 253 (281)
T ss_dssp CSSC-CEEETTHHHHHHHHT-----CSSCTTTCCCC
T ss_pred CCCC-CEECHHHHHHHHHHC-----CCCCcCCCCCC
Confidence 5688 889999999998421 12399998654
No 168
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=44.50 E-value=6.9 Score=30.65 Aligned_cols=24 Identities=25% Similarity=0.776 Sum_probs=19.6
Q ss_pred eEecCCCCC-----cccccchh---hhhCCCC
Q 004844 8 VVPCGKCRT-----KVYCIQCI---KQWYPKM 31 (728)
Q Consensus 8 vv~C~~C~r-----k~fC~~CI---~~wYp~l 31 (728)
.-.|++|++ .|||..|- +.|||+-
T Consensus 13 ~WkC~~C~~~N~Pl~r~C~rCw~LRk~Wlp~~ 44 (46)
T 2c6a_A 13 YWKCTSCNEMNPPLPSHCNRCWALRENWLPED 44 (46)
T ss_dssp CEECTTTCCEECSSCSSCTTTCCCCSSCSCCC
T ss_pred eEecccccccCCCccchhhHHHhhccccCCcc
Confidence 457999996 49999996 5899974
No 169
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}
Probab=44.18 E-value=8.6 Score=37.64 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=31.9
Q ss_pred ceE-EEeecCceeEecCCCccccccccccccccccccCCccHHH
Q 004844 634 PWT-FEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDE 676 (728)
Q Consensus 634 pWt-f~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~e 676 (728)
+|+ ++..+||.|.||.|.+|...|.... |.++=||+-|-++
T Consensus 117 a~~~i~L~pGesvtIppg~~H~f~ageeg--vli~EvSt~~dDe 158 (175)
T 2y0o_A 117 VWHEIELEPGGQYTIPPNTKHWFQAGEEG--AVVTEMSSTSTDK 158 (175)
T ss_dssp CCEEEEECTTCEEEECTTCCEEEEEEEEE--EEEEEEEECCCGG
T ss_pred CCcEEEECCCCEEEECCCCcEEEEeCCCC--EEEEEEeCCCCCC
Confidence 344 5899999999999999999996554 6667777766554
No 170
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=43.05 E-value=10 Score=30.42 Aligned_cols=27 Identities=37% Similarity=0.994 Sum_probs=21.7
Q ss_pred CceEecCCCCC-----cccccchh---hhhCCCCC
Q 004844 6 KYVVPCGKCRT-----KVYCIQCI---KQWYPKMS 32 (728)
Q Consensus 6 ~~vv~C~~C~r-----k~fC~~CI---~~wYp~lt 32 (728)
...-.|++|++ .|||..|- +.|||+-+
T Consensus 9 eD~WkC~~C~k~N~Pl~ryC~rCwaLRk~Wlpd~~ 43 (53)
T 2cr8_A 9 EDEWQCTECKKFNSPSKRYCFRCWALRKDWYSDCS 43 (53)
T ss_dssp SCCEECSSSCCEECSSCCBCTTTCCBCCCCCCCCC
T ss_pred cceeecccccccCCCccchhHHHHHhhcccCCCcc
Confidence 44678999996 69999996 58999854
No 171
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=42.81 E-value=8 Score=42.75 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.6
Q ss_pred eEEEeecCceeEecCCCcccccccc
Q 004844 635 WTFEQKLGEAVFIPAGCPHQVRNLK 659 (728)
Q Consensus 635 Wtf~Q~~GEAVFIPAGcPHQVrNL~ 659 (728)
.++.=+.||.++||+|.+|.+.|.-
T Consensus 128 ~~~~l~~GDv~~~P~G~~H~~~N~g 152 (445)
T 2cav_A 128 DTYKLDQGDAIKIQAGTPFYLINPD 152 (445)
T ss_dssp EEEEEETTEEEEECTTCCEEEEECC
T ss_pred EEEEecCCCEEEECCCCcEEEEECC
Confidence 4677788999999999999999995
No 172
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=42.25 E-value=6.6 Score=36.38 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=36.5
Q ss_pred cCCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEecCCC
Q 004844 608 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGC 651 (728)
Q Consensus 608 ~dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGc 651 (728)
.=|.|...-.+.+.+-+.|+++|||..|.| +-||-|.|=||=
T Consensus 14 ~Ap~h~rrk~msa~LskeLr~ky~vr~~~I--kkGD~V~Vi~G~ 55 (120)
T 1vq8_T 14 RAPLHERHKQVRATLSADLREEYGQRNVRV--NAGDTVEVLRGD 55 (120)
T ss_dssp TCCGGGSGGGGEEEECHHHHHHHTCSEEEC--CTTCEEEECSST
T ss_pred cCCcchhhheeeCcCCHHHHHhhccccccc--cCCCEEEEEecC
Confidence 358899988888888889999999999876 679999999984
No 173
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=41.85 E-value=6.2 Score=31.66 Aligned_cols=29 Identities=31% Similarity=0.768 Sum_probs=21.9
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
.-|+-..||..|+.+|... ...||+||..
T Consensus 26 ~pCgH~~~C~~C~~~~~~~------~~~CPiCR~~ 54 (64)
T 2vje_A 26 GKTGHLMACFTCAKKLKKR------NKPCPVCRQP 54 (64)
T ss_dssp TTEEEEEECHHHHHHHHHT------TCCCTTTCCC
T ss_pred CCCCChhhHHHHHHHHHHc------CCcCCCcCcc
Confidence 4677445999999999732 3579999975
No 174
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=41.52 E-value=23 Score=31.79 Aligned_cols=45 Identities=22% Similarity=0.516 Sum_probs=25.6
Q ss_pred CCCceEecCCCCCcccccchhhhhCCCCCHHHHHh---hCCCCCCCcccccccC
Q 004844 4 ERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAE---ICPFCRRNCNCSVCLH 54 (728)
Q Consensus 4 d~~~vv~C~~C~rk~fC~~CI~~wYp~lt~~di~~---~CP~Crg~CNCk~CLr 54 (728)
+.+.+|.|..|.+. |=..|+.-+. .| .+.+.+ .||.|+ .|.+|-+
T Consensus 19 ~~~~Li~C~~C~~~-~H~~Cl~~~~-~~-~~~~~~~~W~C~~C~---~C~~C~~ 66 (114)
T 2kwj_A 19 RPEELVSCADCGRS-GHPTCLQFTL-NM-TEAVKTYKWQCIECK---SCILCGT 66 (114)
T ss_dssp CCCCCEECSSSCCE-ECTTTTTCCH-HH-HHHHHHTTCCCGGGC---CCTTTTC
T ss_pred CCCCCeEeCCCCCc-cchhhCCChh-hh-hhccCCCccCccccC---ccCcccc
Confidence 45689999999965 5555554211 11 123333 577664 4666654
No 175
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=40.53 E-value=8.4 Score=34.72 Aligned_cols=12 Identities=25% Similarity=1.087 Sum_probs=11.3
Q ss_pred ccccchhhhhCC
Q 004844 18 VYCIQCIKQWYP 29 (728)
Q Consensus 18 ~fC~~CI~~wYp 29 (728)
.||-.|+++||.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 699999999997
No 176
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.21 E-value=8 Score=35.88 Aligned_cols=40 Identities=25% Similarity=0.462 Sum_probs=35.6
Q ss_pred CCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEecCC
Q 004844 609 HPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAG 650 (728)
Q Consensus 609 dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAG 650 (728)
=|.|...-++.+.+=+.|+++|||.-|.| +-||-|.|=+|
T Consensus 18 Ap~h~r~k~msa~LSkeLR~ky~~r~~~I--kkGD~V~Vi~G 57 (121)
T 3j21_U 18 APLHVRQKLMSAPLSRELREKYKVRNLPV--RVGDKVRIMRG 57 (121)
T ss_dssp CCTTGGGGGSEEEBCHHHHHHTCCSEEEC--CSSSEEEECSS
T ss_pred CCcchhhhhhcCcCCHHHHHHhCCccccc--ccCCEEEEeec
Confidence 47888888888888889999999999988 57999999998
No 177
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=39.50 E-value=12 Score=41.91 Aligned_cols=85 Identities=11% Similarity=0.035 Sum_probs=46.5
Q ss_pred CcccCCcCCcceeeCHHHHH-HHHHHhCccceEEEeecCceeEecCCCccccccccccccccccccCCccHHHHHHH---
Q 004844 605 EQVIHPIHDQCFYLSSEHKK-KLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRL--- 680 (728)
Q Consensus 605 ~~v~dPIHDQ~fYLt~~hk~-kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rL--- 680 (728)
....||-.++.+|+..-.-+ .+-.+-|-+-.+..=..||.++||+|.||.+.|...-+.+..=++||.. ..- .|
T Consensus 352 ~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~viP~G~~H~~~ng~~~l~~l~f~~s~~p-~~~-~laG~ 429 (476)
T 1fxz_A 352 VPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTP-MIG-TLAGA 429 (476)
T ss_dssp EEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSTTEEEEEEESSSSC-CEE-ESSST
T ss_pred cceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEEECCCCeEEEEeCCCCEEEEEEECCCCC-cee-Eccch
Confidence 34577877777776543211 1111122222333357899999999999999995444444433345522 111 22
Q ss_pred HHHhhcCCccc
Q 004844 681 TKEFRLLPKNH 691 (728)
Q Consensus 681 teEfR~Lp~~H 691 (728)
+.=|+.||.+-
T Consensus 430 ~s~~~~~p~~V 440 (476)
T 1fxz_A 430 NSLLNALPEEV 440 (476)
T ss_dssp TCTGGGSCHHH
T ss_pred hHHHHhCCHHH
Confidence 34566666543
No 178
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=38.55 E-value=33 Score=32.51 Aligned_cols=37 Identities=22% Similarity=0.723 Sum_probs=27.5
Q ss_pred CCCceEecCCCCCcccccchhhhhCCCCCHHHHHh--------hCCCCC
Q 004844 4 ERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAE--------ICPFCR 44 (728)
Q Consensus 4 d~~~vv~C~~C~rk~fC~~CI~~wYp~lt~~di~~--------~CP~Cr 44 (728)
+.|.++.|.+|- +.||..||. |.+.++.+++ .||+|+
T Consensus 71 ~GG~LlcCD~Cp-r~Fh~~Cl~---p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 71 EGGNLICCDFCH-NAFCKKCIL---RNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp CCSSEEECSSSC-CEEEHHHHH---HHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCcEEeCCCCC-CeeeHhhcC---CCCChhhhhhcccCCCCCEeeccc
Confidence 567899999999 889999996 4455544433 388884
No 179
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.95 E-value=12 Score=31.68 Aligned_cols=27 Identities=19% Similarity=0.597 Sum_probs=20.2
Q ss_pred CcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 16 TKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 16 rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
-+.|...||.+|.-.- =...||+||..
T Consensus 41 ~h~fH~~Cl~~Wl~~~----~~~~CplCr~~ 67 (80)
T 2d8s_A 41 LHFVHQACLQQWIKSS----DTRCCELCKYE 67 (80)
T ss_dssp SCCEETTHHHHHHHHH----CCSBCSSSCCB
T ss_pred CCeeCHHHHHHHHhhC----CCCCCCCCCCe
Confidence 4899999999997421 02479999875
No 180
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=36.77 E-value=13 Score=40.66 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=32.6
Q ss_pred cCCcCCcceeeCHHHHHHHHHHhCc----cceEEEeecCceeEecCCCccccccc
Q 004844 608 IHPIHDQCFYLSSEHKKKLKEEFGV----EPWTFEQKLGEAVFIPAGCPHQVRNL 658 (728)
Q Consensus 608 ~dPIHDQ~fYLt~~hk~kLkeEyGV----epWtf~Q~~GEAVFIPAGcPHQVrNL 658 (728)
+||=.++.+|+-.-.- .+|| ...++.=..||+++||+|.+|-+.|.
T Consensus 65 Hh~~a~E~~yVl~G~g-----~v~~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~ 114 (416)
T 1uij_A 65 HHADADFLLFVLSGRA-----ILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNP 114 (416)
T ss_dssp EEESEEEEEEEEESCE-----EEEEECSSCEEEEEECTTEEEEECTTCEEEEEEC
T ss_pred ccCCCceEEEEEeeEE-----EEEEEECCCCeEEEecCCCEEEECCCCeEEEEec
Confidence 3555566666644321 1343 35667778999999999999999998
No 181
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=35.89 E-value=13 Score=32.34 Aligned_cols=31 Identities=19% Similarity=0.564 Sum_probs=28.3
Q ss_pred ceecCCcccccccccccCCCCCcccchhchH
Q 004844 123 RVYCNHCATSIIDLHRSCPKCSYELCLTCCK 153 (728)
Q Consensus 123 R~~CD~C~tSI~D~HRsC~~CsydLCL~CC~ 153 (728)
...||.|...+..+.-.|..|.|+|=+.|-.
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~ 77 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCDECDFDLHAKCAL 77 (89)
T ss_dssp SCCCTTTSCCCCSCEEECTTTCCCCCHHHHH
T ss_pred CeEeCCCCCcCCCcEEEcCCCCCeEcHHhcC
Confidence 4679999999999999999999999999974
No 182
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=34.26 E-value=16 Score=41.32 Aligned_cols=102 Identities=9% Similarity=-0.010 Sum_probs=55.6
Q ss_pred CCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcCCcceeeCHHHHH-HHHHHhCccceEEEeecCceeE
Q 004844 568 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKK-KLKEEFGVEPWTFEQKLGEAVF 646 (728)
Q Consensus 568 ~~~GAlWdIFrreDv~KLreyL~kh~~Ef~h~~~~p~~~v~dPIHDQ~fYLt~~hk~-kLkeEyGVepWtf~Q~~GEAVF 646 (728)
..+|.+.-+... +.|-|.. |.--...+.-..+.-+....||-.++.+|+..-.-+ .+-.+-|-+-.+..=..||.++
T Consensus 351 ~~gG~v~~~~~~-~fP~L~~-l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~v 428 (510)
T 3c3v_A 351 PQAGSLKTANEL-NLLILRW-LGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLV 428 (510)
T ss_dssp TTTEEEEEECTT-TSTTHHH-HTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred CCCeEEEEeccc-cCccccc-ceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEEE
Confidence 467777777764 5777732 110001111112222345678888888777544211 1111122222333357899999
Q ss_pred ecCCCccccccccccccccccccCC
Q 004844 647 IPAGCPHQVRNLKSCTKVAVDFVSP 671 (728)
Q Consensus 647 IPAGcPHQVrNL~SCIKVAlDFVSP 671 (728)
||+|.||-+.|...-+.+..=|+|+
T Consensus 429 iP~G~~H~~~Ng~e~l~~l~f~~s~ 453 (510)
T 3c3v_A 429 VPQNFAVAGKSQSDNFEYVAFKTDS 453 (510)
T ss_dssp ECTTCEEEEEECSSEEEEEEEESSS
T ss_pred ECCCCeEEEEeCCCCEEEEEEECCC
Confidence 9999999999954444443333344
No 183
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=31.99 E-value=19 Score=30.72 Aligned_cols=30 Identities=27% Similarity=0.772 Sum_probs=23.4
Q ss_pred eEecCCCCCcccccchhhhh---CCCCCHHHHHh
Q 004844 8 VVPCGKCRTKVYCIQCIKQW---YPKMSELDVAE 38 (728)
Q Consensus 8 vv~C~~C~rk~fC~~CI~~w---Yp~lt~~di~~ 38 (728)
.|.|.+|+ ..||..|-..| =+.+|=+++++
T Consensus 43 ~v~C~~C~-~~FC~~C~~~w~~~H~~~sC~~~~~ 75 (86)
T 2ct7_A 43 EATCPQCH-QTFCVRCKRQWEEQHRGRSCEDFQN 75 (86)
T ss_dssp CEECTTTC-CEECSSSCSBCCTTTTTSCHHHHHH
T ss_pred ceEeCCCC-CccccccCCchhhcCCCCChHHHHH
Confidence 47888898 77999999998 77777666653
No 184
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=31.95 E-value=18 Score=39.71 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.1
Q ss_pred ceEEEeecCceeEecCCCcccccccc
Q 004844 634 PWTFEQKLGEAVFIPAGCPHQVRNLK 659 (728)
Q Consensus 634 pWtf~Q~~GEAVFIPAGcPHQVrNL~ 659 (728)
+.++.=+.||+++||+|.+|.+.|.-
T Consensus 102 ~~~~~l~~GDv~~iP~G~~H~~~N~g 127 (434)
T 2ea7_A 102 RDSYILEQGHAQKIPAGTTFFLVNPD 127 (434)
T ss_dssp EEEEEEETTEEEEECTTCEEEEEECC
T ss_pred CEEEEeCCCCEEEECCCccEEEEeCC
Confidence 45777788999999999999999995
No 185
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=31.85 E-value=16 Score=33.86 Aligned_cols=55 Identities=11% Similarity=-0.013 Sum_probs=34.2
Q ss_pred CcccCCcCCcceeeCHHHHHHHHHHhCccc--eEEEeecCceeEecCCCccc-ccccccccccc
Q 004844 605 EQVIHPIHDQCFYLSSEHKKKLKEEFGVEP--WTFEQKLGEAVFIPAGCPHQ-VRNLKSCTKVA 665 (728)
Q Consensus 605 ~~v~dPIHDQ~fYLt~~hk~kLkeEyGVep--Wtf~Q~~GEAVFIPAGcPHQ-VrNL~SCIKVA 665 (728)
....|| +.+.+|+=.--- ..+-|-.+ |++ ..||.+++|+|.+|+ +.+...|+=+.
T Consensus 58 p~H~H~-~~ee~~VL~G~~---~~~~g~~~~~~~~--~~Gd~~~~p~g~~H~p~~~~e~~~~l~ 115 (145)
T 2o1q_A 58 AAHVHV-GPGEYFLTKGKM---DVRGGKAAGGDTA--IAPGYGYESANARHDKTEFPVASEFYM 115 (145)
T ss_dssp CCEEES-SCEEEEEEEEEE---EETTCGGGTSEEE--ESSEEEEECTTCEESCCEEEEEEEEEE
T ss_pred CccCCC-CCEEEEEEEeEE---EEcCCCEecceEe--CCCEEEEECcCCccCCeECCCCeEEEE
Confidence 345666 555555432211 12223333 444 689999999999999 88888886433
No 186
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=31.23 E-value=22 Score=37.56 Aligned_cols=48 Identities=17% Similarity=0.365 Sum_probs=32.5
Q ss_pred ccCCcCCcceeeCHHHHHHHHHHhCc---cc--eEEEeecCceeEecCCCccccccccc
Q 004844 607 VIHPIHDQCFYLSSEHKKKLKEEFGV---EP--WTFEQKLGEAVFIPAGCPHQVRNLKS 660 (728)
Q Consensus 607 v~dPIHDQ~fYLt~~hk~kLkeEyGV---ep--Wtf~Q~~GEAVFIPAGcPHQVrNL~S 660 (728)
..|| ..+-+|+..-.- ++.| .+ .++.=..||.++||+|.+|.++|...
T Consensus 95 H~H~-~~E~~~Vl~G~~-----~~~~~~~~g~~~~~~l~~GD~~~ip~g~~H~~~n~~~ 147 (385)
T 1j58_A 95 HWHK-EAEWAYMIYGSA-----RVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEE 147 (385)
T ss_dssp EEES-SCEEEEEEEEEE-----EEEEECTTSCEEEEEEETTEEEEECTTCCEEEEEEEE
T ss_pred ccCC-hheEEEEEeeeE-----EEEEEeCCCcEEEEEeCCCCEEEECCCCeEEEEECCC
Confidence 3566 566666543321 1333 22 25577899999999999999999865
No 187
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=31.23 E-value=34 Score=33.14 Aligned_cols=46 Identities=24% Similarity=0.670 Sum_probs=37.7
Q ss_pred CCCceEecC--CCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCcccccccCc
Q 004844 4 ERKYVVPCG--KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHT 55 (728)
Q Consensus 4 d~~~vv~C~--~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~CNCk~CLr~ 55 (728)
+.|.|+-|. +|- +.||..||++..-.-+.++|.+.=|. +|=.|...
T Consensus 87 ~Gg~l~~Cdn~~C~-r~FC~~CI~~nvG~~~~~~i~~~d~W-----~Cy~C~P~ 134 (159)
T 3a1b_A 87 GGREVLMCGNNNCC-RCFCVECVDLLVGPGAAQAAIKEDPW-----NCYMCGHK 134 (159)
T ss_dssp CCSEEEECSSTTTC-CEEEHHHHHHHTCTTHHHHHHTSSSC-----CCTTTCSS
T ss_pred CCCeEEeeCCCCCC-CchhHHHHHHhcCHhHHHHHhccCCC-----EEEecCCc
Confidence 356799999 899 78999999999999889999988666 55556544
No 188
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=31.21 E-value=12 Score=42.04 Aligned_cols=121 Identities=11% Similarity=0.115 Sum_probs=63.6
Q ss_pred CCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcCCcceeeCHHHHH-HHHHHhCccceEEEeecCceeE
Q 004844 568 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKK-KLKEEFGVEPWTFEQKLGEAVF 646 (728)
Q Consensus 568 ~~~GAlWdIFrreDv~KLreyL~kh~~Ef~h~~~~p~~~v~dPIHDQ~fYLt~~hk~-kLkeEyGVepWtf~Q~~GEAVF 646 (728)
..+|.+.-+... +.|-|... .--...+....+.-.....||=.++.+|+..-.-+ .+-.+.|-+-.+..=..||.++
T Consensus 346 ~~gG~v~~~~~~-~~P~L~~l-gls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~v 423 (493)
T 2d5f_A 346 PKAGRISTLNSL-TLPALRQF-GLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLV 423 (493)
T ss_dssp TTTEEEEEESTT-TSTTHHHH-TCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred CCCeEEEEeccc-cCcccccc-ceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEE
Confidence 356777777654 67776321 10011111111222344578877887776543211 1111122222233457899999
Q ss_pred ecCCCccccccccccccccccccCCccHHHHHHHHHHhhcCCcccc
Q 004844 647 IPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHR 692 (728)
Q Consensus 647 IPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~ 692 (728)
||+|.||...|...-..+..=|.|+..-..- |+.=|+.+|.+-.
T Consensus 424 vP~G~~H~~~n~~e~~~~l~~~ts~~p~~~~--l~s~~~~~p~eVl 467 (493)
T 2d5f_A 424 VPQNFVVAEQGGEQGLEYVVFKTHHNAVSSY--IKDVFRAIPSEVL 467 (493)
T ss_dssp ECTTCEEEEEEEEEEEEEEEEESSTTCCEEE--HHHHHHHSCHHHH
T ss_pred ECCCCeEeeeeCCCCEEEEEEECCCCCccee--HHHHHHhCCHHHH
Confidence 9999999999976444443333232221111 1666777876543
No 189
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=30.18 E-value=18 Score=37.71 Aligned_cols=34 Identities=21% Similarity=0.494 Sum_probs=25.4
Q ss_pred EecCCCCCcccccchhhhhCCCCCHHHHHhhCCC--CCCCc
Q 004844 9 VPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPF--CRRNC 47 (728)
Q Consensus 9 v~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~--Crg~C 47 (728)
|..++|+ ..||-.||.+|...-. ...||+ |+..+
T Consensus 195 Vts~~CG-HsFcR~cI~~~~~~~~----~~~CPvtGCr~~l 230 (267)
T 3htk_C 195 LISRKCN-HVFDRDGIQNYLQGYT----TRDCPQAACSQVV 230 (267)
T ss_dssp EEESSSC-CEEEHHHHHHHSTTCS----CEECSGGGCSCEE
T ss_pred eeeCCCC-CcccHHHHHHHHHhCC----CCCCCcccccCcC
Confidence 4556898 7899999999986421 157999 98744
No 190
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=30.03 E-value=12 Score=33.85 Aligned_cols=13 Identities=31% Similarity=1.255 Sum_probs=11.4
Q ss_pred ccccchhhhhCCC
Q 004844 18 VYCIQCIKQWYPK 30 (728)
Q Consensus 18 ~fC~~CI~~wYp~ 30 (728)
.||-.|+.+||..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6999999999973
No 191
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=29.01 E-value=30 Score=29.30 Aligned_cols=36 Identities=28% Similarity=0.705 Sum_probs=27.6
Q ss_pred CCCCceecCCcccc--cccccccCCCCCcccchhchHH
Q 004844 119 GNDERVYCNHCATS--IIDLHRSCPKCSYELCLTCCKE 154 (728)
Q Consensus 119 ~~DER~~CD~C~tS--I~D~HRsC~~CsydLCL~CC~E 154 (728)
+.++...|..|..+ ++.---+|..|+.-+|-.|...
T Consensus 15 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 45667789999876 2333358999999999999864
No 192
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=28.93 E-value=44 Score=37.93 Aligned_cols=36 Identities=19% Similarity=0.516 Sum_probs=29.4
Q ss_pred CCCceecCCcccccccccccCCC--C---CcccchhchHHH
Q 004844 120 NDERVYCNHCATSIIDLHRSCPK--C---SYELCLTCCKEI 155 (728)
Q Consensus 120 ~DER~~CD~C~tSI~D~HRsC~~--C---sydLCL~CC~El 155 (728)
.+...+|..|++-+|++...|+. | ..++|+.|.+.-
T Consensus 455 ~~~~~~C~~C~~~lFn~~~v~~~~~~~~~~~v~C~~Ca~~~ 495 (531)
T 3avr_A 455 EEPAHYCSICEVEVFDLLFVTNESNSRKTYIVHCQDCARKT 495 (531)
T ss_dssp TCCCEECTTTCCEECSEEEEEECTTCSSEEEEECHHHHHHH
T ss_pred CCCCeeccccchhheeeEEEEecCCCCCCCCcCChhhhhhc
Confidence 45688999999999999988852 4 247999999974
No 193
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=28.35 E-value=13 Score=29.75 Aligned_cols=29 Identities=24% Similarity=0.785 Sum_probs=21.4
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
..|+-..||..|+.+|.-. ...||.||..
T Consensus 25 ~pCgH~~~C~~C~~~~~~~------~~~CPiCR~~ 53 (63)
T 2vje_B 25 GRTGHLVTCFHCARRLKKA------GASCPICKKE 53 (63)
T ss_dssp TTEEEEEECHHHHHHHHHT------TCBCTTTCCB
T ss_pred cCCCCHhHHHHHHHHHHHh------CCcCCCcCch
Confidence 4666344999999998632 2689999974
No 194
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=28.30 E-value=37 Score=28.64 Aligned_cols=34 Identities=21% Similarity=0.737 Sum_probs=27.5
Q ss_pred CCceecCC--cccccc----cccccCC-----CCCcccchhchHH
Q 004844 121 DERVYCNH--CATSII----DLHRSCP-----KCSYELCLTCCKE 154 (728)
Q Consensus 121 DER~~CD~--C~tSI~----D~HRsC~-----~CsydLCL~CC~E 154 (728)
+..++|-. |.+.|. +....|+ +|+|.+|..|-.+
T Consensus 23 ~~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~ 67 (80)
T 2jmo_A 23 MGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEA 67 (80)
T ss_dssp CSSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEE
T ss_pred CCcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcc
Confidence 34899988 999885 3557898 9999999999643
No 195
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=28.29 E-value=32 Score=32.11 Aligned_cols=73 Identities=16% Similarity=0.295 Sum_probs=43.3
Q ss_pred HHhhhhHhhcHHHhhhhhhhhhhccccCCcccccccccCCCCceecCCccccc-c--cccccCCCCCcccchhchHHHhc
Q 004844 81 SLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSI-I--DLHRSCPKCSYELCLTCCKEICE 157 (728)
Q Consensus 81 ~lLP~lk~i~~EQ~~E~e~Eaki~G~~~s~~~i~~a~~~~DER~~CD~C~tSI-~--D~HRsC~~CsydLCL~CC~ElR~ 157 (728)
.+|+||.+=.+++..|-|.=.+++..- .++..... .+..-.|.+|..+. | +--+.|..|.+.+|-.|.-....
T Consensus 17 ~Il~Vl~Rd~~l~~~E~~ri~kL~~~l---~~~k~~~~-~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~ 92 (134)
T 1zbd_B 17 IINRVIARAEKMETMEQERIGRLVDRL---ETMRKNVA-GDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSN 92 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHTCC-SCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCC
T ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHH---HHHHHHhc-cCCCccccccCCCcccccCCCCCCCCCCcccccccCCccCC
Confidence 456666655555544444333332211 01111111 24456799999886 3 66789999999999999877643
No 196
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=27.74 E-value=43 Score=28.45 Aligned_cols=36 Identities=25% Similarity=0.732 Sum_probs=28.4
Q ss_pred cCCCCceecCCccccccccc---ccCCCCCcccchhchHH
Q 004844 118 CGNDERVYCNHCATSIIDLH---RSCPKCSYELCLTCCKE 154 (728)
Q Consensus 118 ~~~DER~~CD~C~tSI~D~H---RsC~~CsydLCL~CC~E 154 (728)
.+.++...|..|.++ |.+- -+|..|+.-+|-.|...
T Consensus 16 ~pd~~~~~C~~C~~~-Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 16 QEDEDAPACNGCGCV-FTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCTTTCCBCTTTCCB-CCTTSCCEECTTTCCEECTGGGCC
T ss_pred ccCCCCCCCcCcCCc-cccchhcccccCCCcEEChHHhCC
Confidence 355677789999987 4444 58999999999999864
No 197
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=26.45 E-value=23 Score=39.61 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=19.1
Q ss_pred ecCceeEecCCCcccccccccc
Q 004844 640 KLGEAVFIPAGCPHQVRNLKSC 661 (728)
Q Consensus 640 ~~GEAVFIPAGcPHQVrNL~SC 661 (728)
+.||+|.||||.||=.-|--.-
T Consensus 150 ~~GDvi~iPaG~~~~~~N~g~e 171 (466)
T 3kgl_A 150 RTGDTIATHPGVAQWFYNDGNQ 171 (466)
T ss_dssp ETTEEEEECTTCEEEEECCSSS
T ss_pred cCCCEEEECCCCcEEEEeCCCC
Confidence 5699999999999999997543
No 198
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=25.97 E-value=33 Score=37.16 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=25.1
Q ss_pred cceEEEeecCceeEecCCCccccccccccc
Q 004844 633 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCT 662 (728)
Q Consensus 633 epWtf~Q~~GEAVFIPAGcPHQVrNL~SCI 662 (728)
.+=+|.=..||++.||+|.+||..|...|+
T Consensus 315 ~~~~~~w~~gD~fvvP~w~~h~~~n~~~a~ 344 (368)
T 3nw4_A 315 NGETTKLEKGDMFVVPSWVPWSLQAETQFD 344 (368)
T ss_dssp TTEEEEECTTCEEEECTTCCEEEEESSSEE
T ss_pred CCEEEEecCCCEEEECCCCcEEEEeCCCEE
Confidence 445688889999999999999999976554
No 199
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=25.55 E-value=27 Score=38.92 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=24.9
Q ss_pred ecCceeEecCCCccccccccccccccccccCCcc
Q 004844 640 KLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 673 (728)
Q Consensus 640 ~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEn 673 (728)
+.||+|.||||.+|=.-|--+-==|++-++.|-|
T Consensus 135 ~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~~n 168 (465)
T 3qac_A 135 REGDIFAMPAGVSHWAYNNGDQPLVAVILIDTAN 168 (465)
T ss_dssp ETTEEEEECTTCEEEEECCSSSCEEEEEEECTTS
T ss_pred cCCCEEEECCCCeEEEEcCCCCCEEEEEEEcCCC
Confidence 6799999999999999997654444444444433
No 200
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.65 E-value=7.3 Score=33.23 Aligned_cols=36 Identities=25% Similarity=0.691 Sum_probs=23.7
Q ss_pred EecCCCCCcccccchhhhhCCCCCHHH--HHhhCCC--CCC
Q 004844 9 VPCGKCRTKVYCIQCIKQWYPKMSELD--VAEICPF--CRR 45 (728)
Q Consensus 9 v~C~~C~rk~fC~~CI~~wYp~lt~~d--i~~~CP~--Crg 45 (728)
+.-..|+ ..||..|++++.-..-.+. ....||. |+.
T Consensus 21 ~~l~~Cg-H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~ 60 (94)
T 1wim_A 21 TTIAQCQ-CIFCTLCLKQYVELLIKEGLETAISCPDAACPK 60 (94)
T ss_dssp EEETTTT-EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSS
T ss_pred eEcCCCC-CcccHHHHHHHHHHHhhcCCcccccCccccCCC
Confidence 3444688 8999999999875321111 2358998 764
No 201
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=24.26 E-value=39 Score=35.88 Aligned_cols=37 Identities=16% Similarity=0.385 Sum_probs=28.5
Q ss_pred CCCceecCCcccccccccc---cCCCCCcccchhchHHHh
Q 004844 120 NDERVYCNHCATSIIDLHR---SCPKCSYELCLTCCKEIC 156 (728)
Q Consensus 120 ~DER~~CD~C~tSI~D~HR---sC~~CsydLCL~CC~ElR 156 (728)
.....+|++|+..+.-+-| +|..|++-.|-.|-.-+.
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~ 393 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP 393 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC
Confidence 3455689999998753222 599999999999987654
No 202
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.05 E-value=37 Score=28.79 Aligned_cols=36 Identities=25% Similarity=0.787 Sum_probs=27.2
Q ss_pred CCCCceecCCcccc--cccccccCCCCCcccchhchHH
Q 004844 119 GNDERVYCNHCATS--IIDLHRSCPKCSYELCLTCCKE 154 (728)
Q Consensus 119 ~~DER~~CD~C~tS--I~D~HRsC~~CsydLCL~CC~E 154 (728)
+.++...|..|..+ ++.---+|..|+.-+|-.|+..
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 45566789999886 3333358999999999999753
No 203
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.62 E-value=35 Score=26.77 Aligned_cols=25 Identities=24% Similarity=0.817 Sum_probs=18.9
Q ss_pred CceecCCcccccccc----cccCCCCCcc
Q 004844 122 ERVYCNHCATSIIDL----HRSCPKCSYE 146 (728)
Q Consensus 122 ER~~CD~C~tSI~D~----HRsC~~Csyd 146 (728)
.+-+|..|..++|-. -..|++|+|.
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred ecccCCCCCCceEEecCCCeEECCCCCCE
Confidence 466899999877655 4479999884
No 204
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=23.57 E-value=19 Score=34.36 Aligned_cols=35 Identities=23% Similarity=0.691 Sum_probs=29.7
Q ss_pred CceecCCcccc---cccccccCCCCCcccchhchHHHh
Q 004844 122 ERVYCNHCATS---IIDLHRSCPKCSYELCLTCCKEIC 156 (728)
Q Consensus 122 ER~~CD~C~tS---I~D~HRsC~~CsydLCL~CC~ElR 156 (728)
..-.|.+|..+ +++--+-|..|.+-+|-.|+..++
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~ 104 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHP 104 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCS
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccC
Confidence 35689999998 788899999999999999995443
No 205
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.48 E-value=34 Score=27.75 Aligned_cols=25 Identities=36% Similarity=0.887 Sum_probs=19.0
Q ss_pred CCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCC
Q 004844 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (728)
Q Consensus 12 ~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~ 46 (728)
.-|+-..||..|+.+ ...||+||..
T Consensus 31 ~pCgH~~~C~~C~~~----------~~~CP~CR~~ 55 (68)
T 2ea5_A 31 LPCRHTCLCDGCVKY----------FQQCPMCRQF 55 (68)
T ss_dssp TTTTBCCSCTTHHHH----------CSSCTTTCCC
T ss_pred ECCCChhhhHHHHhc----------CCCCCCCCcc
Confidence 457744499999984 2789999974
No 206
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=22.93 E-value=1.7e+02 Score=28.98 Aligned_cols=61 Identities=13% Similarity=0.362 Sum_probs=40.4
Q ss_pred hhhhhhhhhhccccCCcccccccccCCCCc------eecCCcccc--cccccccCCCCCcccchhchHH
Q 004844 94 TQEIEFEASIQRVHSSKVGVSETLCGNDER------VYCNHCATS--IIDLHRSCPKCSYELCLTCCKE 154 (728)
Q Consensus 94 ~~E~e~Eaki~G~~~s~~~i~~a~~~~DER------~~CD~C~tS--I~D~HRsC~~CsydLCL~CC~E 154 (728)
+.+.--+=|-+|+...+++-..+.+..... -.|-.|.++ ++.=-.+|.+|+.-+|-.|+..
T Consensus 129 i~~~Y~~Lk~~G~~FP~~~~~damf~~~~~p~W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 129 VQDTYQIMKVEGHVFPEFKESDAMFAAERAPDWVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp HHHHHHHHHHHTCCCCCCCGGGGCCCCCCCCCCCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred HHHHHHHHHhcCCCcccchhHHHhhhcccccccccCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 445555556678887666655555432221 268899864 3433468999999999999874
No 207
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=22.22 E-value=28 Score=32.47 Aligned_cols=40 Identities=20% Similarity=0.535 Sum_probs=27.7
Q ss_pred CCCceEecCCCCCcccccchhhhhCCCCCHHHHH-----hhCCCCC
Q 004844 4 ERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVA-----EICPFCR 44 (728)
Q Consensus 4 d~~~vv~C~~C~rk~fC~~CI~~wYp~lt~~di~-----~~CP~Cr 44 (728)
+.|.++-|.+|- +.||..||..=...-+.++|. =.|++|+
T Consensus 65 dGG~LlcCd~Cp-r~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 65 EGGNLICCDFCH-NAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp CCSEEEECSSSS-CEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCCeeEecCCCc-hhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 567899999999 889999998654322233332 3577773
No 208
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=21.42 E-value=25 Score=24.47 Aligned_cols=9 Identities=44% Similarity=1.206 Sum_probs=5.2
Q ss_pred CceecCCcc
Q 004844 122 ERVYCNHCA 130 (728)
Q Consensus 122 ER~~CD~C~ 130 (728)
+|-||++|-
T Consensus 2 ~RpYCe~CE 10 (26)
T 2hqh_E 2 SRPYCEICE 10 (26)
T ss_dssp --CEETTTT
T ss_pred CCccchHHH
Confidence 677887774
No 209
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=20.30 E-value=61 Score=35.44 Aligned_cols=45 Identities=22% Similarity=0.685 Sum_probs=36.0
Q ss_pred CCceEecC--CCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCcccccccCc
Q 004844 5 RKYVVPCG--KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHT 55 (728)
Q Consensus 5 ~~~vv~C~--~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~CNCk~CLr~ 55 (728)
.|.|+-|. +|. +.||..||++..-.-+.++|...-|+ +|=.|...
T Consensus 102 Gg~l~~Cdn~~C~-r~FC~~Ci~~n~g~~~~~~i~~~d~W-----~Cf~C~p~ 148 (386)
T 2pv0_B 102 GETLLICGNPDCT-RCYCFECVDSLVGPGTSGKVHAMSNW-----VCYLCLPS 148 (386)
T ss_dssp CSSCEECCSTTCC-CEECHHHHHHHTCTTHHHHHHHCSSC-----CCTTTSSC
T ss_pred CCeEEEeCCCCCC-cchHHHHHHHhcChhHHHHhhccCCc-----eEEEcCCc
Confidence 46799999 999 78999999999988888999886655 45555543
No 210
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=20.25 E-value=27 Score=26.82 Aligned_cols=12 Identities=42% Similarity=1.068 Sum_probs=6.9
Q ss_pred CCCceecCCccc
Q 004844 120 NDERVYCNHCAT 131 (728)
Q Consensus 120 ~DER~~CD~C~t 131 (728)
..||-|||+|-+
T Consensus 17 ~~eRpYCd~CEv 28 (42)
T 2pzo_E 17 GEERPYCEICEM 28 (42)
T ss_dssp ----CEETTTTE
T ss_pred ccCCcccccccc
Confidence 479999999963
No 211
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=20.13 E-value=14 Score=35.31 Aligned_cols=42 Identities=21% Similarity=0.308 Sum_probs=32.8
Q ss_pred cCCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEecCCC
Q 004844 608 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGC 651 (728)
Q Consensus 608 ~dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGc 651 (728)
.=|.|...-.+.+.+-+.|+++|||..|.| +.||-|.|=+|=
T Consensus 20 ~Ap~h~Rrk~msa~LSkelr~ky~vr~~~I--kkGD~V~Vi~Gk 61 (145)
T 2zkr_t 20 NAPSHIRRKIMSSPLSKELRQKYNVRSMPI--RKDDEVQVVRGH 61 (145)
T ss_dssp TCCHHHHGGGGBC-CCHHHHHC-CC-CCBC--CTTCEEEECSST
T ss_pred cCcHHHHHHHHhcccChhHHhhcCcccccc--CCCCEEEEeecC
Confidence 457888888888888888999999998765 579999999985
Done!