Query 004845
Match_columns 728
No_of_seqs 114 out of 1183
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 13:53:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 5E-184 1E-188 1499.0 42.7 715 2-728 46-761 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 7E-171 1E-175 1464.0 55.3 676 4-695 1-679 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 3E-124 6E-129 1096.9 52.8 640 10-692 1-654 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 6E-118 1E-122 1041.0 46.4 612 26-690 1-624 (624)
5 TIGR00733 putative oligopeptid 100.0 1.4E-72 3E-77 645.2 46.1 551 26-688 1-588 (591)
6 COG1297 Predicted membrane pro 100.0 9.1E-61 2E-65 523.1 30.2 572 20-695 8-619 (624)
7 PF03169 OPT: OPT oligopeptide 90.2 7.2 0.00016 46.6 16.3 54 480-535 64-119 (624)
8 TIGR00733 putative oligopeptid 89.6 28 0.00061 41.3 20.1 228 433-686 2-265 (591)
9 COG0628 yhhT Predicted permeas 81.3 15 0.00033 40.4 11.9 72 465-538 255-331 (355)
10 TIGR02872 spore_ytvI sporulati 67.2 1.9E+02 0.004 31.2 15.8 41 497-537 285-329 (341)
11 PRK12287 tqsA pheromone autoin 60.8 1.2E+02 0.0027 33.2 12.9 49 490-538 266-319 (344)
12 PRK10983 putative inner membra 58.5 3E+02 0.0065 30.7 16.0 44 494-537 287-334 (368)
13 PF01594 UPF0118: Domain of un 57.7 1.6E+02 0.0035 31.5 13.1 53 487-539 261-318 (327)
14 TIGR02106 cyd_oper_ybgT cyd op 29.5 63 0.0014 22.7 2.7 18 31-48 5-22 (30)
15 PF08173 YbgT_YccB: Membrane b 26.9 76 0.0017 21.9 2.7 18 31-48 5-22 (28)
16 PRK14749 hypothetical protein; 26.6 78 0.0017 22.1 2.7 18 31-48 5-22 (30)
17 KOG2927 Membrane component of 26.4 45 0.00098 36.6 2.3 34 401-434 183-217 (372)
18 PF13829 DUF4191: Domain of un 26.3 2.1E+02 0.0045 29.7 7.0 44 401-449 24-67 (224)
19 PF04982 HPP: HPP family; Int 25.6 3.1E+02 0.0068 25.4 7.6 86 515-662 24-120 (120)
20 COG5438 Predicted multitransme 25.2 7.2E+02 0.016 27.9 11.2 81 517-614 255-335 (385)
21 TIGR00801 ncs2 uracil-xanthine 21.6 9.5E+02 0.021 27.1 12.0 18 516-533 272-289 (415)
22 PF03606 DcuC: C4-dicarboxylat 20.6 5.2E+02 0.011 29.7 9.7 91 404-506 251-342 (465)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-184 Score=1499.04 Aligned_cols=715 Identities=62% Similarity=1.184 Sum_probs=699.3
Q ss_pred CCCCCCChhhhhcCCCCCCCCCCCcchHhHHHHhHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHHHHHHHcCCC
Q 004845 2 EEANDNPIEEVRLTVPITDDPTIPALTFRTWVLGLTSCCLLAFVNQFFGYRQNQLYLSSISAQILVLPIGKLMAATLPSK 81 (728)
Q Consensus 2 ~~~~~sp~~evr~~v~~~dd~~~p~lT~Ra~~lG~~~~~~~~~~n~yf~lk~g~~~~~s~~~~il~~~lg~~~a~~lP~~ 81 (728)
||+|||||||||+.||++|||++|++|||+|++|++.+++++++||+|++|.+.+.++.+++|++.+|+||+|+|.+|+|
T Consensus 46 ed~~~spv~EVrl~Vp~tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~~R~~~lsis~i~aQi~~~PlGklma~~lP~~ 125 (761)
T KOG2262|consen 46 EDEEDSPVPEVRLTVPPTDDPTLPVLTFRMWFLGLISCIVLAFVNQFFSYRYPPLSISAIVAQIATYPLGKLMAKTLPTW 125 (761)
T ss_pred cccccCcchhheeecCCCCCCCchhHhHHHHHHHHHHHHHHHHHhhhhcccCCCeehHHHHHHHHHHhHHHHHHHhCCce
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCCcccceeeehhhhhcchhhhhhHHHHHHHHHhccCCChHHHHHHHHHHhHhhHHHHhhcccc
Q 004845 82 PIPVPLTPWSFSLNPGPFNLKEHVLITIFAGCGSSGVYAVGIITIVKAFYKRSLHVVPAMMLVQTTQLLGYGWAGLFRKY 161 (728)
Q Consensus 82 ~~~~~~~~~~~~lNpgpft~kE~~iiq~~Asaa~~~~~a~~~i~~~~~~~~~~~~~~~~~l~~ls~~llG~~~Ag~lRr~ 161 (728)
++++ +++|+|||||||||.|||++++++|+++++.+||++++.+|++||+++++++.++++++++|++|||+||++||+
T Consensus 126 ~~~~-~~~~~fslNPGPFn~KEHvlitIfan~~sg~aYat~Ii~~~k~fY~~~l~f~~~~ll~lttQ~lGyGwAGl~Rk~ 204 (761)
T KOG2262|consen 126 KFGL-GGRWSFSLNPGPFNVKEHVLITIFANIGSGTAYATHIITAQKAFYKRNLSFGYAFLLVLTTQLLGYGWAGLFRKY 204 (761)
T ss_pred eeec-CcceEEEeCCCCCcchheeeeehhhhccCcchhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhcccHhhhhHhh
Confidence 9987 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcCchhHHHHHHHHHhhhccccccCccchHHHHHHHHHHHHHHHhhccchhhhccccchhhhhccCCcceeeec
Q 004845 162 LVDSPYMWWPANLVQVSLFRALHEEEKRTKGGLTRLQFFVIVFISSFAYYVVPGYLFPSISALSFVCWIWKDSVTAQKLG 241 (728)
Q Consensus 162 lV~~~~l~fP~~la~a~li~alh~~~~~~~~~~s~~k~f~~~f~~~~v~~~~p~~~~p~L~~~~~~~wi~p~~~~~~~if 241 (728)
+|||.+|.||++|++.+|+|+||++++.++++++|+|||+++|.+||+|+|+|+|+||+|++++|+||++|+|.+++||+
T Consensus 205 lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~~swvcW~~P~s~~~~qi~ 284 (761)
T KOG2262|consen 205 LVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPILSSFSWVCWIWPSSITANQIG 284 (761)
T ss_pred ccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHHhhhheeeEeccccHHHHHhc
Confidence 99999999999999999999999998887777999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcccceeeccccccccCCcccccHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCCCCCCCCCCcccccc
Q 004845 242 SGLQGLGMGSFGLDWATVAGFLGSPLATPFFAIANILVGFFLFLYILIPIAYWCNAFEAQRFPLFSSHTFDSDGQIYNVS 321 (728)
Q Consensus 242 G~~~Glgl~~~tfDws~i~~~~g~gli~p~~~~~~~~~G~~l~~~ii~P~~~~~n~~~~~~~P~~s~~~fd~~G~~y~~s 321 (728)
||.+|||+.|++|||+++++|+|||+++|+++.+|.++|.++..+|+.|++||+|.|+++++|++|+++||++|++||++
T Consensus 285 sg~~GLGi~~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~~n~~~a~~fPI~Ss~lf~~tG~sYnvt 364 (761)
T KOG2262|consen 285 SGLTGLGIGPFTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYWTNTYDAKYFPIFSSSLFDHTGNSYNVT 364 (761)
T ss_pred ccccccccccccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhhccceecceeceecCcceecCCcEecee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccccHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccCChhhhhhhhcc
Q 004845 322 RILNEKEFSFDREAYDNYSRLYLSVLFAFIYGLGFATLMASISHVALFEGKTIWQMWRKTTAAVKQQFGDVHTRLMKKNY 401 (728)
Q Consensus 322 ~i~~~~~~~~~~~~y~~~s~~~l~~~~~l~~g~~~a~~~~~i~~~~L~~~k~i~~i~~~~~~~~~~~~~d~h~~lm~~~y 401 (728)
+|+| +|+++|.++||+|||+|+++.++++||.+|++++|.++|.+|+|+|| +|+..|.+ .++++|+|.|+||| |
T Consensus 365 ~Il~-~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkd---iw~~~~~~-~~k~~DiHtrlMkk-Y 438 (761)
T KOG2262|consen 365 KILD-SKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKD---IWQQTKKA-FNKKMDIHTRLMKK-Y 438 (761)
T ss_pred eeec-CccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHH---HHHHHHhc-cccCCCHHHHHHHH-h
Confidence 9999 99999999999999999999999999999999999999999999999 88888776 36789999999999 9
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHHHHHHHHHHhhhheeeeccCCCchhHHHHHHHHHhccCCch
Q 004845 402 EAVPQWWFHAILIITFALSLFTCEGFDKQFQLPWWGLLLACAMAFFFTLPVGVIQATTNLQPGLNIITEMVIGYMYPGKP 481 (728)
Q Consensus 402 ~evP~ww~~~~~v~~~v~~i~~~~~~~~~~~lp~~~~~lal~l~~i~~~~~g~~~a~t~~~~~l~~isqlv~g~i~pg~~ 481 (728)
||||+|||++.+++++++++++|+.|+++.|+|||++++|+++++++++|.|+++|+||+++|+|+++|+|.||++||+|
T Consensus 439 KeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~AtTNq~~GLNiitE~i~Gy~~PgrP 518 (761)
T KOG2262|consen 439 KEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQATTNQTPGLNIITEYIIGYIYPGRP 518 (761)
T ss_pred ccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhhccCCccHHHHHHHHHHhhcCCch
Confidence 99999999999999999999999999766799999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhHhhhhhhhhhhhcCCChHHHHHHHHHhHHHhHHHHHHHHHHHHHhhccccCCCCCCCCCCccc
Q 004845 482 LANVAFKTYGYISMVQALGFLGDFKLGHYMKVPPKSMFVVQLVGTIVASTVYFGTAWWLLTSVEHICNPSLLPEGSPWTC 561 (728)
Q Consensus 482 ~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr~~f~~QliG~ivg~~v~~~v~~~~l~~~~~~~~~~~~~~~~~~t~ 561 (728)
+|||.||+||+.++.||..++||+|+|||||+|||.||.+|++||+++++|+.+|.+|++.+++|+|+.+ |++.|||
T Consensus 519 iAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~tivs~~Vn~gv~~W~m~~I~~iC~~~---~~s~~TC 595 (761)
T KOG2262|consen 519 IANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTIVAGFVNLGVAWWLMYSIPNICTTD---QNSPWTC 595 (761)
T ss_pred HHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHHHhheeeeHHhHHHHHhcccccccCC---CCCCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred chhHHHHHhHhHHhhccccccccCCCCchhHHHHHHHHHHHHHHHHHhhhhcCCcccccccchhHHhhhhcccCCccchh
Q 004845 562 PGDDVFYNASIIWGVVGPLRMFTNYGNYPQMNWFFLIGFLAPFPVWLLSRKFPEKKWIKNIHMPLLLAGPGSLPSAKAVN 641 (728)
Q Consensus 562 p~~~~~~~~sv~wg~~gp~~~f~~g~~y~~~~~~~liG~~~~i~~~l~~r~~p~~~~~~~i~~p~~~~g~~~~~p~~~~~ 641 (728)
|.+++++++||+||++||+|+|+.+++|+.+.|+||+|+++|+++|+++|++|+++|.+++|+|+++.|.+.+||.+..|
T Consensus 596 P~~rvffnASvIWGlIGP~riF~~~g~Y~~l~wFFLiGa~~pv~vw~~~k~fPk~~w~~~i~~pvl~gg~~~mPpat~vn 675 (761)
T KOG2262|consen 596 PSDRVFFNASVIWGLIGPKRIFGSLGIYPGLNWFFLIGALAPVLVWLLQKKFPKKKWIKQINPPVLFGGTANMPPATAVN 675 (761)
T ss_pred CCCceEEeceeeeecccchhhcCCCCccCcchHHHHHHHHhhHHHHHHHHhcchhhhhhccCcceEecccccCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhccccccchhhhhhHhHHhhHHHHHHHHHHHHHhCCCCCCccccCCCCC-CCCCCCCCCCCCc
Q 004845 642 YLSWGAVGIFFNYYVYRRFKGWWARHTYILSAALDAGVAFMGVFLYFTLQSQDIFGPEWWGLAATD-HCPLAKCPIAPGI 720 (728)
Q Consensus 642 ~~~~~~iG~~~~~~~~r~~~~w~~ky~~vlaagL~aG~~i~glv~~~~~~~~gv~~~~wwg~n~~~-~~~~~~~~~~~~~ 720 (728)
+++++++|+++++++|||++.||+||||++|||||+|.++++++++|++|+.|+ ..+||| |+++ +|+..+|+..+..
T Consensus 676 y~sw~iv~fifny~i~r~~~~WW~kYNyvLsaaldaG~a~~~vliffcv~~~~~-~~~WWG-n~~~~~c~~a~cp~~~~v 753 (761)
T KOG2262|consen 676 YTSWAIVGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVAFMGVLIFFCVQYPGI-SLNWWG-NTVSAGCDLAGCPTAKGV 753 (761)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccchhHHHhHhhheeccCCC-cccccc-CcCCCCCCccCCCcCCee
Confidence 999999999999999999999999999999999999999999999999999999 888999 9885 9999999999999
Q ss_pred ccCCCCCC
Q 004845 721 KVQGCPVA 728 (728)
Q Consensus 721 ~~~~~~~~ 728 (728)
.+++||+|
T Consensus 754 ~~~~~~~f 761 (761)
T KOG2262|consen 754 VVSGCPVF 761 (761)
T ss_pred ecCCCCCC
Confidence 99999876
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=6.9e-171 Score=1464.05 Aligned_cols=676 Identities=36% Similarity=0.750 Sum_probs=657.4
Q ss_pred CCCCChhhhhcCCCCCCCCCCCcchHhHHHHhHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHHHHHHHcCCCCC
Q 004845 4 ANDNPIEEVRLTVPITDDPTIPALTFRTWVLGLTSCCLLAFVNQFFGYRQNQLYLSSISAQILVLPIGKLMAATLPSKPI 83 (728)
Q Consensus 4 ~~~sp~~evr~~v~~~dd~~~p~lT~Ra~~lG~~~~~~~~~~n~yf~lk~g~~~~~s~~~~il~~~lg~~~a~~lP~~~~ 83 (728)
||||||||||++||++|||++|++|+|+|++|++++++++++||+|++|+|.++++++++|+++|++||+|+|++|++++
T Consensus 1 ~~~spypeVr~~v~~~DDp~~p~~TfRa~~lG~~l~~i~s~in~~f~lR~p~i~is~~~~qll~yp~Gk~~a~~lP~~~~ 80 (681)
T TIGR00727 1 EFDSPYPEVRAAVPPTDDPTIPVNTIRAWFIGLIWSTVGSGFNMFFSHRVPSISLNTPIIQMLAYPCGKAWAKIIPDWTI 80 (681)
T ss_pred CCCCcchhhhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccCCCCCCcccceeeehhhhhcchhhhhhHHHHHHHHHhccCCChHHHHHHHHHHhHhhHHHHhhcccccc
Q 004845 84 PVPLTPWSFSLNPGPFNLKEHVLITIFAGCGSSGVYAVGIITIVKAFYKRSLHVVPAMMLVQTTQLLGYGWAGLFRKYLV 163 (728)
Q Consensus 84 ~~~~~~~~~~lNpgpft~kE~~iiq~~Asaa~~~~~a~~~i~~~~~~~~~~~~~~~~~l~~ls~~llG~~~Ag~lRr~lV 163 (728)
+++| ++|+|||||||+|||+++|+||+++.+.+++.+++.+|++||++++++++++++++++|++|+++||++||++|
T Consensus 81 ~~~g--~~~~lNPGPF~~KEh~liti~a~~~~~~~y~~~~i~~~~~fy~~~~~~g~~il~~lstq~~G~g~Ag~lRr~lV 158 (681)
T TIGR00727 81 TIRG--RKYNIIPGPFNVKEHMFITLMYAVSFGAAYTTDIILAQKLFYKSAFGFGYQFLLSLSTQFIGFGFAGILRRFVV 158 (681)
T ss_pred cccc--ceeccCCCCCChhcceeeeeeeehhccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhceEe
Confidence 8866 78999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred ccCCCcCchhHHHHHHHHHhhhccccc--cCccchHHHHHHHHHHHHHHHhhccchhhhccccchhhhhccCCcceeeec
Q 004845 164 DSPYMWWPANLVQVSLFRALHEEEKRT--KGGLTRLQFFVIVFISSFAYYVVPGYLFPSISALSFVCWIWKDSVTAQKLG 241 (728)
Q Consensus 164 ~~~~l~fP~~la~a~li~alh~~~~~~--~~~~s~~k~f~~~f~~~~v~~~~p~~~~p~L~~~~~~~wi~p~~~~~~~if 241 (728)
+|++|+||+++++++|+|+||+++++. .|++||+|+|+++|+++|+|+|+|+|+||+|+.|+|+|||+|+|++++++|
T Consensus 159 ~p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P~n~~~~~i~ 238 (681)
T TIGR00727 159 YPARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNWMTWIKPNNINLNQIF 238 (681)
T ss_pred ccccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhccCcchhhhhhh
Confidence 999999999999999999999765432 356899999999999999999999999999999999999999999999999
Q ss_pred ccccccCccc-ceeeccccccccCCcccccHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCCCCCCCCCCccccc
Q 004845 242 SGLQGLGMGS-FGLDWATVAGFLGSPLATPFFAIANILVGFFLFLYILIPIAYWCNAFEAQRFPLFSSHTFDSDGQIYNV 320 (728)
Q Consensus 242 G~~~Glgl~~-~tfDws~i~~~~g~gli~p~~~~~~~~~G~~l~~~ii~P~~~~~n~~~~~~~P~~s~~~fd~~G~~y~~ 320 (728)
|+.+|||++| +|||||+++++.|+|+++|+++++|+++|.+++++++.|++||+|.|+++|+|++|+++||++|++||+
T Consensus 239 g~~~GlGl~p~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy~N~w~~~~lPi~s~~~fd~~G~~Y~v 318 (681)
T TIGR00727 239 GGSTGLGINPISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYYSNTWYCQYLPISSNGLYDNFGHSYNV 318 (681)
T ss_pred ccccCCCcCCcCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCccchhhhcCCCcccc
Confidence 9999999999 999999998788999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccccHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccCChhhhhhhhc
Q 004845 321 SRILNEKEFSFDREAYDNYSRLYLSVLFAFIYGLGFATLMASISHVALFEGKTIWQMWRKTTAAVKQQFGDVHTRLMKKN 400 (728)
Q Consensus 321 s~i~~~~~~~~~~~~y~~~s~~~l~~~~~l~~g~~~a~~~~~i~~~~L~~~k~i~~i~~~~~~~~~~~~~d~h~~lm~~~ 400 (728)
++|++ +|+++|+||||||||+|+++++++.||.+||+++++++|++|+|||| +++++|+ ++++|+|.|+||+
T Consensus 319 s~il~-~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~~---i~~~~~~---~~~~D~h~rlM~~- 390 (681)
T TIGR00727 319 TEILD-KDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGKL---LFNALKD---DDYPDPHSNLMKA- 390 (681)
T ss_pred ceeeC-CCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHhc---CCCCChhHHHhhc-
Confidence 99999 99999999999999999999999999999999999999999999999 8887763 5678999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHHHHHHHHHHhhhheeeeccCCCchhHHHHHHHHHhccCCc
Q 004845 401 YEAVPQWWFHAILIITFALSLFTCEGFDKQFQLPWWGLLLACAMAFFFTLPVGVIQATTNLQPGLNIITEMVIGYMYPGK 480 (728)
Q Consensus 401 y~evP~ww~~~~~v~~~v~~i~~~~~~~~~~~lp~~~~~lal~l~~i~~~~~g~~~a~t~~~~~l~~isqlv~g~i~pg~ 480 (728)
|||||+|||++++++++++++++++.+ ++++|||++++|+++++++.+|.|+++|+||++.++|+++|+++|++.|||
T Consensus 391 Y~evP~WWy~~~l~is~~~~~~~v~~~--~t~lP~W~~~lal~l~~i~~iP~~~i~a~t~~~~~ln~l~eli~Gy~~PG~ 468 (681)
T TIGR00727 391 YKEVPDWWYLAVFLGFFGMGIATVEHW--PTETPVWGLFVCLIFNFVFLIPTTILQATTNISFGLNVLTEFIVGYALPGR 468 (681)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHHHHhhhheEeecCCccchhHHHHHHhhhccCCC
Confidence 999999999999999999999999998 789999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhHhhhhhhhhhhhcCCChHHHHHHHHHhHHHhHHHHHHHHHHHHHhhccccCCCCCCCCCCcc
Q 004845 481 PLANVAFKTYGYISMVQALGFLGDFKLGHYMKVPPKSMFVVQLVGTIVASTVYFGTAWWLLTSVEHICNPSLLPEGSPWT 560 (728)
Q Consensus 481 ~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr~~f~~QliG~ivg~~v~~~v~~~~l~~~~~~~~~~~~~~~~~~t 560 (728)
|++||+||++++++.+||.+++||||+|||||+|||+||.+|++|+++|++|+++|++|++++++|+|+++ |+++||
T Consensus 469 p~a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl~~~~v~~~v~~~~l~~i~~~c~~~---~~~~ft 545 (681)
T TIGR00727 469 PLAMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATIWQIFVQIGVLNWAIGNIDNFCTAD---QNAKYT 545 (681)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC---CCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred cchhHHHHHhHhHHhhccccccccCCCCchhHHHHHHHHHHHHHHHHHhhhhcCCcccccccchhHHhhhhcccCCccch
Q 004845 561 CPGDDVFYNASIIWGVVGPLRMFTNYGNYPQMNWFFLIGFLAPFPVWLLSRKFPEKKWIKNIHMPLLLAGPGSLPSAKAV 640 (728)
Q Consensus 561 ~p~~~~~~~~sv~wg~~gp~~~f~~g~~y~~~~~~~liG~~~~i~~~l~~r~~p~~~~~~~i~~p~~~~g~~~~~p~~~~ 640 (728)
||..++++++||+||++||+|+|++|++|+.++|+|++|+++|+++|+++|++||+ +.|++|.|+++.+.++++|++++
T Consensus 546 cp~~~~~f~asv~Wg~iGP~r~F~~g~~Y~~l~~~fliGa~~pi~~~~~~r~~P~~-~~~~~n~pv~~~~~g~~~~a~~~ 624 (681)
T TIGR00727 546 CPNAVVFFNASVIWGVIGPKRIFSHGYIYPGLKWFWLIGACIGIFFWLVWKKWPKF-YPRYLDWPMLFVGTGYIPPATPY 624 (681)
T ss_pred CCCccceeehehhhhhcchHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHhcchh-hhhhCCccHHHhhccccCCcchh
Confidence 99999999999999999999999999999999999999999999999999999976 78999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhccccccchhhhhhHhHHhhHHHHHHHHHHHHHhCCC
Q 004845 641 NYLSWGAVGIFFNYYVYRRFKGWWARHTYILSAALDAGVAFMGVFLYFTLQSQDI 695 (728)
Q Consensus 641 ~~~~~~~iG~~~~~~~~r~~~~w~~ky~~vlaagL~aG~~i~glv~~~~~~~~gv 695 (728)
|++++..+|+++|+|+||||++||+||||++|||||+|++++++++||+++++|+
T Consensus 625 n~~s~~~vg~~f~~~irr~~~~ww~kYnYvlsAald~G~a~~~~iiff~v~~~~~ 679 (681)
T TIGR00727 625 NYMYYTSVGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGLVLSAIIIFFCLQLKDT 679 (681)
T ss_pred hHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHhHheeEEEeCCC
Confidence 9999999999999999999999999999999999999999999999999999876
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=2.7e-124 Score=1096.87 Aligned_cols=640 Identities=42% Similarity=0.763 Sum_probs=577.5
Q ss_pred hhhhcCCCCCCCCCCCcchHhHHHHhHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 004845 10 EEVRLTVPITDDPTIPALTFRTWVLGLTSCCLLAFVNQFFGYRQNQLYLSSISAQILVLPIGKLMAATLPSKPIPVPLTP 89 (728)
Q Consensus 10 ~evr~~v~~~dd~~~p~lT~Ra~~lG~~~~~~~~~~n~yf~lk~g~~~~~s~~~~il~~~lg~~~a~~lP~~~~~~~~~~ 89 (728)
+|||+ ||++|||++|++|+|++++|++++++++++|+||+||+|+++.+++++|+++|+++|+++|++|+|+ +
T Consensus 1 ~~vra-v~~~ddp~~~~~T~Ra~~lG~i~~~v~~~~n~~~~lr~g~~~~~si~~~ll~~~~g~~~~~~lP~~~------~ 73 (654)
T TIGR00728 1 QEVRA-VPPTDDPSLPVITFRAWFLGILIGVVFAGVNQFFGLRTGSVSISSIVAALLAYPLGKLWALIIPDWE------G 73 (654)
T ss_pred Ccccc-CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHhcCCcc------c
Confidence 59999 9999999999999999999999999999999999999999999999999999999999999999985 3
Q ss_pred cccccCCCCCCcccceeeehhhhhcchhhhhhHHHHHHHHHhccCCChHHHHHHHHHHhH--hhHHHHhhccccccccCC
Q 004845 90 WSFSLNPGPFNLKEHVLITIFAGCGSSGVYAVGIITIVKAFYKRSLHVVPAMMLVQTTQL--LGYGWAGLFRKYLVDSPY 167 (728)
Q Consensus 90 ~~~~lNpgpft~kE~~iiq~~Asaa~~~~~a~~~i~~~~~~~~~~~~~~~~~l~~ls~~l--lG~~~Ag~lRr~lV~~~~ 167 (728)
+||+|||||||+||||++|+|||++++.+++.+.+-+|..||+++.++++++++++++|+ +|+++|+++||++|+|++
T Consensus 74 ~~~~lnpgpft~kE~~~iq~~asa~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~~~~~~~~lG~~~a~~lRr~lV~~~~ 153 (654)
T TIGR00728 74 WKFSLNPGPFNVKENNLIQTAASACGGLAYAIFILPAQKMFYTSNFSWGYQILLVWSTQLGFLGFGFAGLLRRALVVPAK 153 (654)
T ss_pred cceecCCCCCChhhheeEEeeeeccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHhhHHHhhhheeCccc
Confidence 789999999999999999999999998888877888888889999999998888888888 999999999999999999
Q ss_pred CcCchhHHHHHHHHHhhhcccccc-CccchHHHHHHHHHHHHHHHhhccchhhhccccchhhhhccCCcceeeecccccc
Q 004845 168 MWWPANLVQVSLFRALHEEEKRTK-GGLTRLQFFVIVFISSFAYYVVPGYLFPSISALSFVCWIWKDSVTAQKLGSGLQG 246 (728)
Q Consensus 168 l~fP~~la~a~li~alh~~~~~~~-~~~s~~k~f~~~f~~~~v~~~~p~~~~p~L~~~~~~~wi~p~~~~~~~ifG~~~G 246 (728)
|+||+++|+++|+|+||++.+.++ ++++| ++... |.++|+.+..++|+||+.|+++.++ +|| |
T Consensus 154 l~~P~~la~a~l~~al~~~~~~~~g~~~~r--~l~~~----------~~~~f~~~~~~~~~~~~~p~~~~~~-~fg---g 217 (654)
T TIGR00728 154 LPWPSGLATAELFKALHGKFHTANGDTIAK--NLLRV----------LLKYFSSSFLWSFVSWFFPGFTAFQ-TFG---G 217 (654)
T ss_pred ccCCcccHHHHHHHHhhhccCccCCCccch--hHHHh----------HHHHHHHHHHHHHHHHHhcCCcccc-ccc---c
Confidence 999999999999999976543332 23344 22111 5556666777899999999887765 455 7
Q ss_pred cCcccceeeccccccccCCcccccHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCCCCCCCCCCccccc-ccccc
Q 004845 247 LGMGSFGLDWATVAGFLGSPLATPFFAIANILVGFFLFLYILIPIAYWCNAFEAQRFPLFSSHTFDSDGQIYNV-SRILN 325 (728)
Q Consensus 247 lgl~~~tfDws~i~~~~g~gli~p~~~~~~~~~G~~l~~~ii~P~~~~~n~~~~~~~P~~s~~~fd~~G~~y~~-s~i~~ 325 (728)
+|+++++|||+++++++|+|+++|+++++|+++|++++|+++.|++||+|+|.++++|++|++.+|++|++|+. +++++
T Consensus 218 lg~~~~~f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~~n~~~~~~~p~~s~~~~~~~~~~y~~~~~il~ 297 (654)
T TIGR00728 218 LGSGSIGFGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYYKNTWPADADPIDSSSTIDSTGVRYNSVGLIVV 297 (654)
T ss_pred ccccccceecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCcchhhhcCCCceeeeeeEEEe
Confidence 88899999999986789999999999999999999999999999999999999999999999999999999999 99998
Q ss_pred cCC-ccccHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccCChhhhhhhh-----
Q 004845 326 EKE-FSFDREAYDNYSRLYLSVLFAFIYGLGFATLMASISHVALFEGKTIWQMWRKTTAAVKQQFGDVHTRLMKK----- 399 (728)
Q Consensus 326 ~~~-~~~~~~~y~~~s~~~l~~~~~l~~g~~~a~~~~~i~~~~L~~~k~i~~i~~~~~~~~~~~~~d~h~~lm~~----- 399 (728)
++ +++|+++|++||++|++.++ |+.+|+.+++.++|.+++|+|+ +++.+|+.. ++.+|.|.+++|+
T Consensus 298 -~~~~~l~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~d~~ 369 (654)
T TIGR00728 298 -DGLWTLVKPLYPIYSPLVLSIDF---YALLFNAFSDTIYSFALAHGRD---IISARRDHY-KLGRDDHVRLLSRDEDLK 369 (654)
T ss_pred -CCCceecHHHHHHhCcceeeHHH---HHHHHHHHHHHHHHHHHHhhHH---HHHHHHHhh-hccCCCChHHHhhccccc
Confidence 77 79999999999999999999 8999999999999999999999 776666542 3344566655554
Q ss_pred --ccCCCChHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHHHHHHHHHHhhhheeeeccCCCchhHHHHHHHHHhcc
Q 004845 400 --NYEAVPQWWFHAILIITFALSLFTCEGFDKQFQLPWWGLLLACAMAFFFTLPVGVIQATTNLQPGLNIITEMVIGYMY 477 (728)
Q Consensus 400 --~y~evP~ww~~~~~v~~~v~~i~~~~~~~~~~~lp~~~~~lal~l~~i~~~~~g~~~a~t~~~~~l~~isqlv~g~i~ 477 (728)
.|+|+|+|||+.+++++++++++++++++..+++|||++++++++++++++|.++++|+||+++++++++|+++|++.
T Consensus 370 ~~~~~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~~~~g~tnp~~~l~~~~~li~g~~~ 449 (654)
T TIGR00728 370 VKNYKEVPAWWYLSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFVLAIPIGILAGITNPVSGLNIITELIIGYIL 449 (654)
T ss_pred ccccCcCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhhheEEeecccchhhHHHHHhheeec
Confidence 049999999999999999999998888855578999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHhHhhhhhhhhhhhcCCChHHHHHHHHHhHHHhHHHHHHHHHHHHHhhccccCCCCCCCCC
Q 004845 478 PGKPLANVAFKTYGYISMVQALGFLGDFKLGHYMKVPPKSMFVVQLVGTIVASTVYFGTAWWLLTSVEHICNPSLLPEGS 557 (728)
Q Consensus 478 pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr~~f~~QliG~ivg~~v~~~v~~~~l~~~~~~~~~~~~~~~~ 557 (728)
||++++||+++++++++++||+|++||||+|||+|+|||+||.+|++|+++|++++.++++++.+++++ +++
T Consensus 450 pg~~~a~l~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~~vg~~v~~~v~~~~~~~~~~--------~~~ 521 (654)
T TIGR00728 450 PGRPLANLAFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGTIVGSLVNAPVLEWLYHAIGN--------QNN 521 (654)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--------CCC
Confidence 999999999999999999999999999999999999999999999999999999999999999876643 567
Q ss_pred CcccchhHHHHHhHhHHhhccccccccCCCCchhHHHHHHHHHHHHHHHHHhhhhcCCcccccccchhHHhhhhcccCCc
Q 004845 558 PWTCPGDDVFYNASIIWGVVGPLRMFTNYGNYPQMNWFFLIGFLAPFPVWLLSRKFPEKKWIKNIHMPLLLAGPGSLPSA 637 (728)
Q Consensus 558 ~~t~p~~~~~~~~sv~wg~~gp~~~f~~g~~y~~~~~~~liG~~~~i~~~l~~r~~p~~~~~~~i~~p~~~~g~~~~~p~ 637 (728)
+|+||.+++++++|++||++||+ +|+.+++|+.+.|++++| +++++.++.||++|| +.+++|+|+.+.+...++|.
T Consensus 522 ~~~~p~a~~~~~aa~~~g~~Gp~-~f~~~~~y~~~~~~~l~G-~~~i~~~~~~~~~p~--~~~~~~~~~~~~~~~~lp~~ 597 (654)
T TIGR00728 522 NFTCPNALVFYNASLIWGVIGPK-IFSGKGLYCGLMWFFLVG-VGAVLVWLVRKLFPK--WIKYINPPVAVGGGGYIPPA 597 (654)
T ss_pred CccCCcccchhhheeeeccccch-hcCCCCccHHHHHHHHHH-HHHHHHHHHHHHccc--hhhhcCHHHhhhhhhccCCc
Confidence 89999999999999999999999 999999999999999999 899999999999986 57889888865555555667
Q ss_pred cchhhhHHHHHHHHHHHHHHhhccccc--cchhhhhhHhHHhhHHHHHHHHHHHHHh
Q 004845 638 KAVNYLSWGAVGIFFNYYVYRRFKGWW--ARHTYILSAALDAGVAFMGVFLYFTLQS 692 (728)
Q Consensus 638 ~~~~~~~~~~iG~~~~~~~~r~~~~w~--~ky~~vlaagL~aG~~i~glv~~~~~~~ 692 (728)
.+.++.++.++|+++++++|||+++|| +||||++||||||||+|+++++||++++
T Consensus 598 ~~~~~~~~~~vG~~~~~~~~rr~~~~~~~~~y~~~laagL~~G~al~gviiff~~~~ 654 (654)
T TIGR00728 598 TAVNYSTWAAVGGFFNYRWRKNKRADWKAEKYNYVLAAGLIAGEALAGVIIFFCLGL 654 (654)
T ss_pred chhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHhccC
Confidence 777777778899999999999998887 9999999999999999999999999875
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=5.9e-118 Score=1040.99 Aligned_cols=612 Identities=38% Similarity=0.746 Sum_probs=564.0
Q ss_pred cchHhHHHHhHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccce
Q 004845 26 ALTFRTWVLGLTSCCLLAFVNQFFGYRQNQLYLSSISAQILVLPIGKLMAATLPSKPIPVPLTPWSFSLNPGPFNLKEHV 105 (728)
Q Consensus 26 ~lT~Ra~~lG~~~~~~~~~~n~yf~lk~g~~~~~s~~~~il~~~lg~~~a~~lP~~~~~~~~~~~~~~lNpgpft~kE~~ 105 (728)
|+|+|++++|++++++++++|+|+++|+|+++.+++++|+++|+++|.++|. ++++++||||||+||||
T Consensus 1 ~lT~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~-----------~~~~~ln~gp~~~kE~~ 69 (624)
T PF03169_consen 1 QLTFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLARI-----------GWRFSLNPGPFTIKENN 69 (624)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhh-----------ccccccCCCCCCHHHHH
Confidence 6899999999999999999999999999999999999999999999999972 25678999999999999
Q ss_pred eeehhhhhcchhhhhhHHHHHHHH--HhccCCChHHHHHHHHHHhHhhHHHHhhccccccccCCCcCchhHHHHHHHHHh
Q 004845 106 LITIFAGCGSSGVYAVGIITIVKA--FYKRSLHVVPAMMLVQTTQLLGYGWAGLFRKYLVDSPYMWWPANLVQVSLFRAL 183 (728)
Q Consensus 106 iiq~~Asaa~~~~~a~~~i~~~~~--~~~~~~~~~~~~l~~ls~~llG~~~Ag~lRr~lV~~~~l~fP~~la~a~li~al 183 (728)
++|++||++++++++.++++++|+ ||++++++++++++++++|++|+++|+++||++|+|++|+||+++|++++++++
T Consensus 70 ~vq~~asa~~~~~~a~~~i~~ipa~~~~~~~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~~i~al 149 (624)
T PF03169_consen 70 LVQTMASAAGGMAYAAGFIAAIPALLFLGQPFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAELINAL 149 (624)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHHHHHHh
Confidence 999999999998899999999765 678999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccCccchHHHHHHHHHHHHHHHhhccchhhhccccchhhhhccCCcceeeecccccccCcccceeecccccccc
Q 004845 184 HEEEKRTKGGLTRLQFFVIVFISSFAYYVVPGYLFPSISALSFVCWIWKDSVTAQKLGSGLQGLGMGSFGLDWATVAGFL 263 (728)
Q Consensus 184 h~~~~~~~~~~s~~k~f~~~f~~~~v~~~~p~~~~p~L~~~~~~~wi~p~~~~~~~ifG~~~Glgl~~~tfDws~i~~~~ 263 (728)
|++++ ++.+++|+|+|.++|.++++|+|+|+|+||+|+.++|+||++|+|+..++++|+.+ ++||||++ ++
T Consensus 150 h~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~------~~~dws~~--~~ 220 (624)
T PF03169_consen 150 HSGGG-WREAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWS------FSFDWSPI--LI 220 (624)
T ss_pred ccCcc-chhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccce------eeEeecHH--hc
Confidence 99872 12346999999999999999999999999999999999999999999999988653 89999996 47
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHhhhhcc-ccccccCCCCCCCCCCCCCCcccccccccccCCccccHHHHhccCcc
Q 004845 264 GSPLATPFFAIANILVGFFLFLYILIPIAYWC-NAFEAQRFPLFSSHTFDSDGQIYNVSRILNEKEFSFDREAYDNYSRL 342 (728)
Q Consensus 264 g~gli~p~~~~~~~~~G~~l~~~ii~P~~~~~-n~~~~~~~P~~s~~~fd~~G~~y~~s~i~~~~~~~~~~~~y~~~s~~ 342 (728)
|+|+++|+++++|+++|.+++|+++.|++||+ |.|+++++|++|+++||++|+ +|++.|+++|++++++
T Consensus 221 g~g~i~p~~~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~----------~~~~~~~~~~~~~g~~ 290 (624)
T PF03169_consen 221 GSGLIVPLWAQLSMFLGAVLAWGIIIPILYYSGNAWGGAYLPFNSNSLFDNNGS----------SDGTLNWTKYIGYGPM 290 (624)
T ss_pred CCCeeccHHHHHHHHHHHHHHHHhcCCeeeeeccccCCccccccchhhhhhcCc----------cccccCHHHHHHHHHH
Confidence 99999999999999999999999999999998 999999999999999999985 5678999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH------hhhccCChhhhhhhhccCCCChHHHHHHHHHH
Q 004845 343 YLSVLFAFIYGLGFATLMASISHVALFEGKTIWQMWRKTTAA------VKQQFGDVHTRLMKKNYEAVPQWWFHAILIIT 416 (728)
Q Consensus 343 ~l~~~~~l~~g~~~a~~~~~i~~~~L~~~k~i~~i~~~~~~~------~~~~~~d~h~~lm~~~y~evP~ww~~~~~v~~ 416 (728)
+.+..+.+.|+..++.+++.++|.+++|+|+ ++++++++ .+++++|+|+++||+ |+|+|+|||+.+++++
T Consensus 291 ~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~vP~ww~~~~~~~~ 366 (624)
T PF03169_consen 291 YGSGLFALSYGWSFAALTASIVHAILWHWKA---IWQAFKQSKSSQRSSKSSEDDPHYRLMRT-YKEVPMWWYLAGLVVS 366 (624)
T ss_pred HHhHHHHHhhcccchhhHHHHHHHHHHHHHH---HHhhhhhhcccccccccccCCchhhhhhh-cCCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999 55544432 134578999999998 9999999999999999
Q ss_pred HHHHHhhhhcccccCCcchHHHHHHHHHHHHHHhhhheeeeccCCCc--hhHHHHHHHHHhccCCchhHHHHHHHHHHHH
Q 004845 417 FALSLFTCEGFDKQFQLPWWGLLLACAMAFFFTLPVGVIQATTNLQP--GLNIITEMVIGYMYPGKPLANVAFKTYGYIS 494 (728)
Q Consensus 417 ~v~~i~~~~~~~~~~~lp~~~~~lal~l~~i~~~~~g~~~a~t~~~~--~l~~isqlv~g~i~pg~~~anl~~~~~~~~~ 494 (728)
++++++++..++.++++|+|++++++++++++++|.++++|+||++| ++++++|+++|++.||++++||+++++++++
T Consensus 367 ~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~~~pg~~~a~l~~~~~~~~~ 446 (624)
T PF03169_consen 367 FVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGLLLPGNPIANLLFGGYGYAA 446 (624)
T ss_pred HHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99999988888544899999999999999999999999999999955 8999999999999999999999999999999
Q ss_pred HHHhHhhhhhhhhhhhcCCChHHHHHHHHHhHHHhHHHHHHHHHHHHHhhccccCCCCCCCCCCcccchhHHHHHhHhHH
Q 004845 495 MVQALGFLGDFKLGHYMKVPPKSMFVVQLVGTIVASTVYFGTAWWLLTSVEHICNPSLLPEGSPWTCPGDDVFYNASIIW 574 (728)
Q Consensus 495 ~~qa~~~~~DlK~G~y~~~pPr~~f~~QliG~ivg~~v~~~v~~~~l~~~~~~~~~~~~~~~~~~t~p~~~~~~~~sv~w 574 (728)
++||+|++||||+|||+|+|||+||++|++|+++|+++++++++++ +..+.|.++ ++++++||++|+.++++++|
T Consensus 447 ~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~--~~~~~~~~~---~~~~~~~~ap~a~~~aav~~ 521 (624)
T PF03169_consen 447 ASQAGDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLL--NQAYPCGPD---QGDSFSCPAPQAFAWAAVAW 521 (624)
T ss_pred HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccCcc---ccccCcCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999877 677888876 56699999999999999999
Q ss_pred hhccccccccCCCCchhHHHHHHHHHHHHHHHHHhhhhcCCcccccccchhHHhhh-hcccCCccchhhhHHHHHHHHHH
Q 004845 575 GVVGPLRMFTNYGNYPQMNWFFLIGFLAPFPVWLLSRKFPEKKWIKNIHMPLLLAG-PGSLPSAKAVNYLSWGAVGIFFN 653 (728)
Q Consensus 575 g~~gp~~~f~~g~~y~~~~~~~liG~~~~i~~~l~~r~~p~~~~~~~i~~p~~~~g-~~~~~p~~~~~~~~~~~iG~~~~ 653 (728)
|++||+| +.+|..++|++++|++++++.++++|++|+. + +++ ...+++..+.++++++++|++++
T Consensus 522 g~~~~~~----~~~~~~~~~~~~~G~~~~i~~~l~~~~~P~~---------~-~~~~~~~~~~~~~~~~~~~~~iG~~~~ 587 (624)
T PF03169_consen 522 GLIGPQR----GLPYSALPWGFLIGAVLPILFWLLQRKFPSP---------L-AFGGASSIGFYLPSNYTSAIFIGGLFQ 587 (624)
T ss_pred HhcCCcc----cchHHHHHHHHHHHHHHHHHHHHHHhhCChh---------h-eeeecccccccchhHHHHHHHHHHHHH
Confidence 9999877 7899999999999999999999999988842 2 344 33334444458899999999999
Q ss_pred HHHHhhccccccchhhhhhHhHHhhHHHHHHHHHHHH
Q 004845 654 YYVYRRFKGWWARHTYILSAALDAGVAFMGVFLYFTL 690 (728)
Q Consensus 654 ~~~~r~~~~w~~ky~~vlaagL~aG~~i~glv~~~~~ 690 (728)
+++||||++||+||||++||||||||+|+++++++++
T Consensus 588 ~~~~~~~~~~~~~y~~~laagl~aG~~l~~li~~~~~ 624 (624)
T PF03169_consen 588 FYWRRRYPKWWEKYNYVLAAGLIAGEALMGLIIAFLV 624 (624)
T ss_pred HHhhhcchhHHHhHhhHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999997653
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=1.4e-72 Score=645.22 Aligned_cols=551 Identities=15% Similarity=0.183 Sum_probs=416.8
Q ss_pred cchHhHHHHhHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccce
Q 004845 26 ALTFRTWVLGLTSCCLLAFVNQFFGYRQNQLYLSSISAQILVLPIGKLMAATLPSKPIPVPLTPWSFSLNPGPFNLKEHV 105 (728)
Q Consensus 26 ~lT~Ra~~lG~~~~~~~~~~n~yf~lk~g~~~~~s~~~~il~~~lg~~~a~~lP~~~~~~~~~~~~~~lNpgpft~kE~~ 105 (728)
|+|+|++++|++++++++++|.|+|||.|+++.+|+++++++|.+.|.+. ++|++|||
T Consensus 1 elT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~----------------------~~t~~Enn 58 (591)
T TIGR00733 1 EYTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFR----------------------DRSILENN 58 (591)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhc----------------------cCChhHHH
Confidence 58999999999999999999999999999999999999999999999773 46999999
Q ss_pred eeehhhhhcchhhhhhHHHHHHHHHhc----cCCChHHHHHHHHHHhHhhHHHHhhccccccccCCCcCchhHHHHHHHH
Q 004845 106 LITIFAGCGSSGVYAVGIITIVKAFYK----RSLHVVPAMMLVQTTQLLGYGWAGLFRKYLVDSPYMWWPANLVQVSLFR 181 (728)
Q Consensus 106 iiq~~Asaa~~~~~a~~~i~~~~~~~~----~~~~~~~~~l~~ls~~llG~~~Ag~lRr~lV~~~~l~fP~~la~a~li~ 181 (728)
++||+||++++.+ ++++++|+++. ++++++..+++++.++++|+.|+.||||++|++++|+||||+|+|++++
T Consensus 59 ivQT~asA~~~~a---g~~~~lPAl~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae~l~ 135 (591)
T TIGR00733 59 MVQTAASAAGTLS---SVIFVLPALLMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAEVLK 135 (591)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Confidence 9999999998753 58899999864 4579999999999999999999999999999999999999999999999
Q ss_pred HhhhccccccCccchHHHHHHHHHHHHHHHhhccchhhhccccchhhhhccCCcceeeecccccccCcccceeecccccc
Q 004845 182 ALHEEEKRTKGGLTRLQFFVIVFISSFAYYVVPGYLFPSISALSFVCWIWKDSVTAQKLGSGLQGLGMGSFGLDWATVAG 261 (728)
Q Consensus 182 alh~~~~~~~~~~s~~k~f~~~f~~~~v~~~~p~~~~p~L~~~~~~~wi~p~~~~~~~ifG~~~Glgl~~~tfDws~i~~ 261 (728)
+.++++ +.+|.|.++.+++.+++|.++++ +. .+ |++.....-. |.+...+++|||+ +
T Consensus 136 ~g~~g~-----~~~~~~~l~~g~~~s~~~~~~~~--~~---~~-------~~~~~~~~~~----g~~~~~~~~~~Sp--a 192 (591)
T TIGR00733 136 AGDKAR-----NGTGAKPIAYGGILASIYAFLGS--LR---VW-------SGTLSAAKLV----GRRALYFGSDLSL--A 192 (591)
T ss_pred cccccc-----chhhHHHHHHHHHHHHHHHHHHH--hc---cC-------CchHHHHHhc----CCcceEEEecccH--H
Confidence 864421 23688999999999999998843 11 11 2111100001 1112236789998 6
Q ss_pred ccCCcccccHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCCCCCCCCCCcccccccccccCCccccHHHHhccCc
Q 004845 262 FLGSPLATPFFAIANILVGFFLFLYILIPIAYWCNAFEAQRFPLFSSHTFDSDGQIYNVSRILNEKEFSFDREAYDNYSR 341 (728)
Q Consensus 262 ~~g~gli~p~~~~~~~~~G~~l~~~ii~P~~~~~n~~~~~~~P~~s~~~fd~~G~~y~~s~i~~~~~~~~~~~~y~~~s~ 341 (728)
++|.|+++|+++++++++|++++|+++.|++...++ .+.+. ++.+.....|.+ .+
T Consensus 193 lvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~~~-~~~~~-----------------------~~~~~~~~vw~~-~v 247 (591)
T TIGR00733 193 LIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAKMG-SPGDL-----------------------SALDLAWTIWST-KV 247 (591)
T ss_pred HHcCceeeChHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCc-----------------------cHHHHHHHHHhc-cc
Confidence 899999999999999999999999999999986543 21100 000011122333 34
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccCChh-hhhhhhccCCCChHHHHHHHHHHHHHH
Q 004845 342 LYLSVLFAFIYGLGFATLMASISHVALFEGKTIWQMWRKTTAAVKQQFGDVH-TRLMKKNYEAVPQWWFHAILIITFALS 420 (728)
Q Consensus 342 ~~l~~~~~l~~g~~~a~~~~~i~~~~L~~~k~i~~i~~~~~~~~~~~~~d~h-~~lm~~~y~evP~ww~~~~~v~~~v~~ 420 (728)
+|++++.++ +.++ +.++...|. +++++|++.+..+++.| .+..|. ++|+|.|+...+.++. ++.
T Consensus 248 R~iGvg~m~--~~gl--------~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~-~~dip~~~v~~~~~~~-~~~ 312 (591)
T TIGR00733 248 RYIGVGAIV--VAAL--------WTLLKLRGP---IARGIKAGLEAARRRQAGEAVLRT-EEDLPINIVLTLVALF-VIP 312 (591)
T ss_pred chhhHHHHH--HHHH--------HHHHHHHHH---HHHHHHHHHHHhcccccccccccc-cccccHHHHHHHHHHH-HHH
Confidence 565444433 3322 223344455 55555543222111111 112344 8999999755443332 222
Q ss_pred HhhhhcccccCCcc--------h-HHHHHHHHHHHHHHhhhheeeec--cCCCc--hhHHHHHHHHHhcc----------
Q 004845 421 LFTCEGFDKQFQLP--------W-WGLLLACAMAFFFTLPVGVIQAT--TNLQP--GLNIITEMVIGYMY---------- 477 (728)
Q Consensus 421 i~~~~~~~~~~~lp--------~-~~~~lal~l~~i~~~~~g~~~a~--t~~~~--~l~~isqlv~g~i~---------- 477 (728)
+ . .+ .++.| + .+.+++++++++++...+++.|+ ||.|| ++++++|++++.+.
T Consensus 313 ~--~-~~--~~~~~~~~~~~~~~~~~~~la~vl~f~~a~v~g~~~G~iGts~nPvsg~~~~t~l~~a~~~~~~g~~~~~~ 387 (591)
T TIGR00733 313 L--A-DF--LLYAPILHNIGMAIAVMAVLMLIIGFFVAAIAGYMAGLVGSSNSPISGIGIMSVLFTALILKGLGLSGTGS 387 (591)
T ss_pred H--H-HH--hcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhcCcccCcc
Confidence 1 1 11 23333 3 57788899999999999999999 77777 89999999999998
Q ss_pred --CCchhHHHHHHHHHHHHHHHhHhhhhhhhhhhhcCCChHHHHHHHHHhHHHhHHHHHHHHHHHHHhhccccCCCCCCC
Q 004845 478 --PGKPLANVAFKTYGYISMVQALGFLGDFKLGHYMKVPPKSMFVVQLVGTIVASTVYFGTAWWLLTSVEHICNPSLLPE 555 (728)
Q Consensus 478 --pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr~~f~~QliG~ivg~~v~~~v~~~~l~~~~~~~~~~~~~~ 555 (728)
|+...+|++.+++.+.+++||+|++||||+||++|++||+||++|++|+++|++++.++++.+. +.|++.++.-.++
T Consensus 388 ~~~~~v~~~L~~g~vv~~aa~~AgD~mqDlKtG~LlGatPr~Q~~aq~iG~~vg~~v~~~v~~ll~-~ayg~~~~~~~~~ 466 (591)
T TIGR00733 388 QIPELMAATIFTAAVVCTAAAISNDNLQDLKTGYLVGATPWRQQVALIIGTFVGALVMAPVLNLLI-KAYGIAGTPTAKG 466 (591)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccccCCC
Confidence 4567889999999999999999999999999999999999999999999999999999996554 5656544221224
Q ss_pred CCCcccchhHHHHHhHhHHhhccccccccCCCCchhHHH-HHHHHHHHHHHHHHhhhhcCCcccccccchhHHhhhhccc
Q 004845 556 GSPWTCPGDDVFYNASIIWGVVGPLRMFTNYGNYPQMNW-FFLIGFLAPFPVWLLSRKFPEKKWIKNIHMPLLLAGPGSL 634 (728)
Q Consensus 556 ~~~~t~p~~~~~~~~sv~wg~~gp~~~f~~g~~y~~~~~-~~liG~~~~i~~~l~~r~~p~~~~~~~i~~p~~~~g~~~~ 634 (728)
++.+++| |+..++++++|+++ ..++| .+.+|+++++++.++++..++++ ++++.|.+++|+|+|
T Consensus 467 ~~~l~AP--qA~l~~ava~gi~~-----------~~l~~~~i~~ga~~g~~l~~~~~~~~~~~--~~~~~p~lavgig~y 531 (591)
T TIGR00733 467 ENALPAP--QAFLMAAVTEGVFT-----------GTLEWTMVFIGAGIGIALIIIDEILAKRG--SKFRTPVMAVGVGIY 531 (591)
T ss_pred ccccCCC--HHHHHHHHHhhhcC-----------CCccHHHHHHHHHHHHHHHHHHHHhhhcc--cccCCchhHHHHHhh
Confidence 4556655 55666888888876 23678 56788999999988887766542 456678899999999
Q ss_pred CCccchhhhHHHHHHHHHHHHHHhhccccc------cchhhhhhHhHHhhHHHHHHHHHH
Q 004845 635 PSAKAVNYLSWGAVGIFFNYYVYRRFKGWW------ARHTYILSAALDAGVAFMGVFLYF 688 (728)
Q Consensus 635 ~p~~~~~~~~~~~iG~~~~~~~~r~~~~w~------~ky~~vlaagL~aG~~i~glv~~~ 688 (728)
+|. +++.++++|.+..++|+||+++.. ++|.+++||||++||+|+|++++.
T Consensus 532 LP~---~~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vASGLIaGE~l~Gv~~A~ 588 (591)
T TIGR00733 532 LPL---SLGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGAAGLIVGESLTGVVFAA 588 (591)
T ss_pred cch---hHHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEecHhhcchHHHHHHHHH
Confidence 998 678999999999999999765321 467899999999999999999854
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=9.1e-61 Score=523.11 Aligned_cols=572 Identities=16% Similarity=0.201 Sum_probs=422.5
Q ss_pred CCCCCCcchHhHHHHhHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCC
Q 004845 20 DDPTIPALTFRTWVLGLTSCCLLAFVNQFFGYRQNQLYLSSISAQILVLPIGKLMAATLPSKPIPVPLTPWSFSLNPGPF 99 (728)
Q Consensus 20 dd~~~p~lT~Ra~~lG~~~~~~~~~~n~yf~lk~g~~~~~s~~~~il~~~lg~~~a~~lP~~~~~~~~~~~~~~lNpgpf 99 (728)
|+.++||+|+|++++|+++++++.++|.|+|+|.|.++.++++++++|+.+.|.+. ++
T Consensus 8 ~~~~l~elTlr~vIlGilitvi~~aaN~yLGL~vGlT~a~SIPAAVISmavlk~~~----------------------~~ 65 (624)
T COG1297 8 PTAFLPELTLRGVILGILITVIFLAANVYLGLKVGLTFASSIPAAVISMAVLKAFK----------------------GS 65 (624)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhhhheecceehhhhHHHHHHHHHHHHhC----------------------cc
Confidence 44578999999999999999999999999999999999999999999999999882 57
Q ss_pred CcccceeeehhhhhcchhhhhhHHHHHHHHH----hccCCChHHHHHHHHHHhHhhHHHHhhccccccccCCCcCchhHH
Q 004845 100 NLKEHVLITIFAGCGSSGVYAVGIITIVKAF----YKRSLHVVPAMMLVQTTQLLGYGWAGLFRKYLVDSPYMWWPANLV 175 (728)
Q Consensus 100 t~kE~~iiq~~Asaa~~~~~a~~~i~~~~~~----~~~~~~~~~~~l~~ls~~llG~~~Ag~lRr~lV~~~~l~fP~~la 175 (728)
|+.|||++||+||++++. ++++|+++|.. |.+++++++...++..++++|+.|+.||||.+|.+++|+||||.|
T Consensus 66 silENNmVQT~ASAagtl--sa~vIFviPgl~m~g~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPeGvA 143 (624)
T COG1297 66 SILENNMVQTQASAAGTL--SAGVIFVLPGLLMLGYWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPEGVA 143 (624)
T ss_pred chhhhHHHHHHHhhhccc--cccEEEechhHHhhccccCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCCchh
Confidence 999999999999999874 56799999974 568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccCccchHHHHHHHHHHHHHHHhhccchhhhccccchhhhhccCCcceeeecccccccCcccceee
Q 004845 176 QVSLFRALHEEEKRTKGGLTRLQFFVIVFISSFAYYVVPGYLFPSISALSFVCWIWKDSVTAQKLGSGLQGLGMGSFGLD 255 (728)
Q Consensus 176 ~a~li~alh~~~~~~~~~~s~~k~f~~~f~~~~v~~~~p~~~~p~L~~~~~~~wi~p~~~~~~~ifG~~~Glgl~~~tfD 255 (728)
+||++++..+++.+ .+..|....++..+++|.++.+-+--+-++++ .|+. . |-+..-+..|
T Consensus 144 aAEvL~~g~~~~gd----~~g~~~i~~g~~~~~~~~~l~~g~~~~~~~~~--~~~~----------~---~~~~~~lg~~ 204 (624)
T COG1297 144 AAEVLKAGNQREGD----ASGIKLIALGGALAALYSLLASGLRVIASSLS--AAFS----------V---GRAAFALGLG 204 (624)
T ss_pred HHHHHHhcCCCCCC----cccchhhhhhhHHHHHHHHHhccceeehhhHH--HHHH----------h---cchhhhhccc
Confidence 99999999733322 16778888899999999888773111111111 1221 1 1112234555
Q ss_pred ccccccccCCcccccHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCCCCCCCCCCcccccccccccCCccccHHH
Q 004845 256 WATVAGFLGSPLATPFFAIANILVGFFLFLYILIPIAYWCNAFEAQRFPLFSSHTFDSDGQIYNVSRILNEKEFSFDREA 335 (728)
Q Consensus 256 ws~i~~~~g~gli~p~~~~~~~~~G~~l~~~ii~P~~~~~n~~~~~~~P~~s~~~fd~~G~~y~~s~i~~~~~~~~~~~~ 335 (728)
.|+ +++|.|.+++..+..-++.|.+++|++..|++-+..+- | + |. +..+...+-
T Consensus 205 ~S~--AliG~GylvGl~~~iaml~G~~iaWgvavP~~~~~~~~-----p--~----~~-------------~~~~~a~~v 258 (624)
T COG1297 205 LSL--ALIGAGYLVGLPAGIAMLIGIFIAWGVAVPLLTLIVPG-----P--S----DQ-------------EAGVQAWKV 258 (624)
T ss_pred ccH--HHhCceEEecchHHHHHHHHHHHHHHHHHHHHHhcccC-----C--C----ch-------------hHHHHHHHH
Confidence 666 68999999999999999999999999999987544321 1 0 00 111122334
Q ss_pred HhccCccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcc-CChhhhhhhhccCCCChHHHHHHHH
Q 004845 336 YDNYSRLYLSVLFAFIYGLGFATLMASISHVALFEGKTIWQMWRKTTAAVKQQF-GDVHTRLMKKNYEAVPQWWFHAILI 414 (728)
Q Consensus 336 y~~~s~~~l~~~~~l~~g~~~a~~~~~i~~~~L~~~k~i~~i~~~~~~~~~~~~-~d~h~~lm~~~y~evP~ww~~~~~v 414 (728)
|+++. +|+ |.+...+.+. |+++...|. +.|..+++.+.-. +.+..+..|. ++|+|..|....++
T Consensus 259 W~s~V-rfI--------GaG~i~i~~~--wtl~~l~~p---i~~gi~~~f~~~r~~~~~~~~~rt-e~Dl~~~~~~~~~~ 323 (624)
T COG1297 259 WSSKV-RFI--------GAGAIAIAAI--WTLISLLGP---ILRGIKATFESARGRRRAGAVSRT-ERDLPPKLVLLVLL 323 (624)
T ss_pred hhhee-EEe--------ehhHHHHHHH--HHHHHHHhH---HHHHHHHHHHHhhcccccccccch-hhcCChhhHHHHHH
Confidence 66555 456 4444444444 455566666 4444444321111 1111122254 89999988766655
Q ss_pred HHHHHHHhhhhcccccC-------CcchHHHHHHHHHHHHHHhhh----heeeeccCCCchhHHHHHHHHHhcc------
Q 004845 415 ITFALSLFTCEGFDKQF-------QLPWWGLLLACAMAFFFTLPV----GVIQATTNLQPGLNIITEMVIGYMY------ 477 (728)
Q Consensus 415 ~~~v~~i~~~~~~~~~~-------~lp~~~~~lal~l~~i~~~~~----g~~~a~t~~~~~l~~isqlv~g~i~------ 477 (728)
...+-..+...+.-+++ .+-..+++++++++|.++..+ |.+.+++++.+++++++.++.+.++
T Consensus 324 ~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~v~GflvaAv~gymagLVgSssspiSGi~i~~v~~~~l~~l~~G~~ 403 (624)
T COG1297 324 ATVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVAAVCGYMAGLVGSSSSPISGIGILSVTLLSLLILILGQS 403 (624)
T ss_pred HHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchHHHHHHHHHHHHHHHhccc
Confidence 54443222222221111 122445556666666665554 5567778888899888887774443
Q ss_pred ------CCc----hhHHHHHHHHHHHHHHHhHhhhhhhhhhhhcCCChHHHHHHHHHhHHHhHHHHHHHHHHHHHhhccc
Q 004845 478 ------PGK----PLANVAFKTYGYISMVQALGFLGDFKLGHYMKVPPKSMFVVQLVGTIVASTVYFGTAWWLLTSVEHI 547 (728)
Q Consensus 478 ------pg~----~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr~~f~~QliG~ivg~~v~~~v~~~~l~~~~~~ 547 (728)
|.+ ...+++.+++.+.++.++.|++||||+||+++++||+||++|++|+++++++..+|++. +++.|++
T Consensus 404 ~~~~~~~~~~~~~~~~~~~t~~vv~a~A~is~DnlQDLKTG~LvgATPwkQqvaliiG~~~~alvi~pvL~l-l~~aYgf 482 (624)
T COG1297 404 GGLFIDPLMRKFLVAATLFTASVVAAVAAISNDNLQDLKTGYLVGATPWKQQVALIIGCFVGALVIAPVLEL-LNKAYGF 482 (624)
T ss_pred cccccCcccchhHHHHHHHHHHHHHHHHHhhccchhhhhhCeeecCChHHHHHHHHHhHHhhhhhHHHHHHH-HHHHhCc
Confidence 221 36778889999999999999999999999999999999999999999999999999975 4567787
Q ss_pred cCCCCCCCCCCcccchhHHHHHhHhHHhhccccccccCCCCchhHHH-HHHHHHHHHHHHHHhhhhcCCcccccccchhH
Q 004845 548 CNPSLLPEGSPWTCPGDDVFYNASIIWGVVGPLRMFTNYGNYPQMNW-FFLIGFLAPFPVWLLSRKFPEKKWIKNIHMPL 626 (728)
Q Consensus 548 ~~~~~~~~~~~~t~p~~~~~~~~sv~wg~~gp~~~f~~g~~y~~~~~-~~liG~~~~i~~~l~~r~~p~~~~~~~i~~p~ 626 (728)
..+. ..+....|++|+.+++++..|+++ ..+.| ..+.|+++++.+...+.+..+ + ..+..+|+
T Consensus 483 ~ga~---~r~~~~l~apqa~lma~ia~Gvf~-----------~~lew~mi~~g~~~gi~lI~id~~l~~-~-~~~~~lpv 546 (624)
T COG1297 483 AGAP---PRQGMDLAAPQATLMATIAKGVFT-----------GNLEWSMILAGAGIGIVLIGIDERLKG-R-GGKLRLPV 546 (624)
T ss_pred CCCC---CCCCCCCcchHHHHHHHHhcccCC-----------CCcchHHHHHHHhHhheeeeccHHHhc-C-Cccccccc
Confidence 6543 222222788999999999999887 67888 666888888888777655543 2 24456899
Q ss_pred HhhhhcccCCccchhhhHHHHHHHHHHHHHHhhcc-------ccccchhhhhhHhHHhhHHHHHHHHHHHHHhCCC
Q 004845 627 LLAGPGSLPSAKAVNYLSWGAVGIFFNYYVYRRFK-------GWWARHTYILSAALDAGVAFMGVFLYFTLQSQDI 695 (728)
Q Consensus 627 ~~~g~~~~~p~~~~~~~~~~~iG~~~~~~~~r~~~-------~w~~ky~~vlaagL~aG~~i~glv~~~~~~~~gv 695 (728)
+++|+|+|+|. .+++++++|++..|.+.|+.+ +--+|..+++||||+.||+|+++++....-..|.
T Consensus 547 lAvGvGIylP~---s~~ipi~vG~~l~~~v~~~~~~~~~~~~e~~~r~gvl~aaGLIvGEsL~gvi~a~ii~~~g~ 619 (624)
T COG1297 547 LAVGVGIYLPP---SLTIPIFVGGVLRWAVDRKLKKGDERYKERAKRIGVLFAAGLIVGESLFGVITALIIVGSGK 619 (624)
T ss_pred eeeeeeeecCh---hhchHHHHHHHHHHHHHHhcccccchhhhcccceeEEEeeccccchHHHHHHHHHHheecCC
Confidence 99999999987 578999999999999988733 2234578899999999999999999655554443
No 7
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=90.24 E-value=7.2 Score=46.56 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=28.9
Q ss_pred chhHHHHHHHHHHHHHH--HhHhhhhhhhhhhhcCCChHHHHHHHHHhHHHhHHHHHH
Q 004845 480 KPLANVAFKTYGYISMV--QALGFLGDFKLGHYMKVPPKSMFVVQLVGTIVASTVYFG 535 (728)
Q Consensus 480 ~~~anl~~~~~~~~~~~--qa~~~~~DlK~G~y~~~pPr~~f~~QliG~ivg~~v~~~ 535 (728)
++..|.+..+.+..+.+ .+.++..-+..=.+++.+ .-+.-|+.-++.+.++.++
T Consensus 64 ~~kE~~~vq~~asa~~~~~~a~~~i~~ipa~~~~~~~--~~~~~~~l~~~~~~~lG~~ 119 (624)
T PF03169_consen 64 TIKENNLVQTMASAAGGMAYAAGFIAAIPALLFLGQP--FSFGYLILWTLSTQLLGYG 119 (624)
T ss_pred CHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHh
Confidence 56777777766665555 677776554444444322 2444444444444444433
No 8
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=89.62 E-value=28 Score=41.30 Aligned_cols=228 Identities=14% Similarity=0.088 Sum_probs=124.6
Q ss_pred cchHHHHHHHHHHHHHHhhhheeeeccCCCchhHHHHHH----HHHhccCCchhHHHHHHHHHHHHHHHhHhhhhhh---
Q 004845 433 LPWWGLLLACAMAFFFTLPVGVIQATTNLQPGLNIITEM----VIGYMYPGKPLANVAFKTYGYISMVQALGFLGDF--- 505 (728)
Q Consensus 433 lp~~~~~lal~l~~i~~~~~g~~~a~t~~~~~l~~isql----v~g~i~pg~~~anl~~~~~~~~~~~qa~~~~~Dl--- 505 (728)
+.+-+++++++++.+++..+.++.=.+|..++.++.+-+ +.-.+.+.++..|.+..+.+..+.+.++ +..-+
T Consensus 2 lT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~~t~~EnnivQT~asA~~~~ag-~~~~lPAl 80 (591)
T TIGR00733 2 YTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRDRSILENNMVQTAASAAGTLSS-VIFVLPAL 80 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 456678888888888888887777777777655444433 3333445577788887777666665553 32222
Q ss_pred -hhhhhcCCChHHHHHHHHHhHHHhHHHHHHHHHHHHHhhccccCCCCCCCCCCcccchhHHHHHhHhHHhhcccccccc
Q 004845 506 -KLGHYMKVPPKSMFVVQLVGTIVASTVYFGTAWWLLTSVEHICNPSLLPEGSPWTCPGDDVFYNASIIWGVVGPLRMFT 584 (728)
Q Consensus 506 -K~G~y~~~pPr~~f~~QliG~ivg~~v~~~v~~~~l~~~~~~~~~~~~~~~~~~t~p~~~~~~~~sv~wg~~gp~~~f~ 584 (728)
.+|+.-..|...+...=+.|.++|.+...+.-+.++. +++++-|...+. +-++. .| ++ +
T Consensus 81 ~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~-------------~~~L~fP~G~A~--Ae~l~--~g-~~--g 140 (591)
T TIGR00733 81 LMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVV-------------ESKLPYPEGVAC--AEVLK--AG-DK--A 140 (591)
T ss_pred HhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------cCCCCCCCHHHH--HHHHH--cc-cc--c
Confidence 1233223455677777778899999988886655432 112334433322 22322 12 11 1
Q ss_pred -CCCCchhHHHHHHHHHHHHHHHHHhhhhcCC----------cccccccchhHHhhhhcccCCccchhhhHHHHHHHHHH
Q 004845 585 -NYGNYPQMNWFFLIGFLAPFPVWLLSRKFPE----------KKWIKNIHMPLLLAGPGSLPSAKAVNYLSWGAVGIFFN 653 (728)
Q Consensus 585 -~g~~y~~~~~~~liG~~~~i~~~l~~r~~p~----------~~~~~~i~~p~~~~g~~~~~p~~~~~~~~~~~iG~~~~ 653 (728)
.+..-..+..++.++.+..+. -- -|.+|. +.+.=.+..+....|.|++.+. +.+..+++|.++.
T Consensus 141 ~~~~~~~~l~~g~~~s~~~~~~-~~-~~~~~~~~~~~~~~g~~~~~~~~~~SpalvG~G~ivG~---~v~~s~~~G~vla 215 (591)
T TIGR00733 141 RNGTGAKPIAYGGILASIYAFL-GS-LRVWSGTLSAAKLVGRRALYFGSDLSLALIGVGYLVGL---NIGFAMFLGGAIA 215 (591)
T ss_pred cchhhHHHHHHHHHHHHHHHHH-HH-hccCCchHHHHHhcCCcceEEEecccHHHHcCceeeCh---HHHHHHHHHHHHH
Confidence 011112233344444433332 11 122331 0011123566677999998776 5567889999887
Q ss_pred HHH-----Hhh-c-cc----c------ccchhhhhhHhHHhhHHHHHHHH
Q 004845 654 YYV-----YRR-F-KG----W------WARHTYILSAALDAGVAFMGVFL 686 (728)
Q Consensus 654 ~~~-----~r~-~-~~----w------~~ky~~vlaagL~aG~~i~glv~ 686 (728)
|.+ +++ . +. | |.+|---++.|.+.+.++..++.
T Consensus 216 Wgvl~P~l~~~~~~~~~~~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~ 265 (591)
T TIGR00733 216 WGVAIPIYTAKMGSPGDLSALDLAWTIWSTKVRYIGVGAIVVAALWTLLK 265 (591)
T ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Confidence 642 221 1 10 0 22121126899999999998875
No 9
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=81.26 E-value=15 Score=40.43 Aligned_cols=72 Identities=17% Similarity=0.234 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhccCCchhHHHHHHHHHHHHHHH-hHhhhhhhhhhhhcCCChHHHHHHHHHhH----HHhHHHHHHHHH
Q 004845 465 LNIITEMVIGYMYPGKPLANVAFKTYGYISMVQ-ALGFLGDFKLGHYMKVPPKSMFVVQLVGT----IVASTVYFGTAW 538 (728)
Q Consensus 465 l~~isqlv~g~i~pg~~~anl~~~~~~~~~~~q-a~~~~~DlK~G~y~~~pPr~~f~~QliG~----ivg~~v~~~v~~ 538 (728)
+..+--.+.++...| +.. .+.-.+++...+| -++++...=+|+-+|++|=..+.+.+.|. ++|.++++.++-
T Consensus 255 i~~ip~~i~al~~~~-~~~-~l~~~~~~~vi~~i~~n~l~P~l~g~~~~l~p~~ilisll~g~~l~G~~G~ila~pl~~ 331 (355)
T COG0628 255 IGLIPAVIIALLQGG-PWG-ALLVLIVFLVIQQIEGNILRPKLMGKRLGLHPLVILLSLLGGGSLFGFVGLILAPPLAA 331 (355)
T ss_pred HHHHHHHHHHHHhcc-hHH-HHHHHHHHHHHHHHhcceeccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555 222 2333444445544 44567778899999999999999999876 556666666554
No 10
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=67.18 E-value=1.9e+02 Score=31.23 Aligned_cols=41 Identities=7% Similarity=0.011 Sum_probs=32.0
Q ss_pred HhHhhhhhhhhhhhcCCChHHHHHHHHHhH----HHhHHHHHHHH
Q 004845 497 QALGFLGDFKLGHYMKVPPKSMFVVQLVGT----IVASTVYFGTA 537 (728)
Q Consensus 497 qa~~~~~DlK~G~y~~~pPr~~f~~QliG~----ivg~~v~~~v~ 537 (728)
.-.+..+-.=+|.-+++||=..+.+.+.|. ++|.++++.++
T Consensus 285 ~~~~~l~P~i~g~~~~l~p~~vl~~~l~g~~~~G~~G~~l~~~~~ 329 (341)
T TIGR02872 285 ILRQILEPKVVSSSIGLHPLATLISMYIGLKLFGFLGLIFGPVIV 329 (341)
T ss_pred HHHHhHhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778899999999999999999886 44666665555
No 11
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=60.80 E-value=1.2e+02 Score=33.25 Aligned_cols=49 Identities=12% Similarity=0.090 Sum_probs=37.6
Q ss_pred HHHHHHHHh-HhhhhhhhhhhhcCCChHHHHHHHHHhH----HHhHHHHHHHHH
Q 004845 490 YGYISMVQA-LGFLGDFKLGHYMKVPPKSMFVVQLVGT----IVASTVYFGTAW 538 (728)
Q Consensus 490 ~~~~~~~qa-~~~~~DlK~G~y~~~pPr~~f~~QliG~----ivg~~v~~~v~~ 538 (728)
+.+...+|. +++.+-.=+|+-++++|=..+.+.++|. ++|.++++++.-
T Consensus 266 i~~~iiq~i~~nvi~P~i~g~~v~l~P~~vllsil~gg~l~G~~G~ilavPl~~ 319 (344)
T PRK12287 266 AGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTI 319 (344)
T ss_pred HHHHHHHHHHhcchhhhhhhccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 455555555 5677888899999999999999999876 566667777663
No 12
>PRK10983 putative inner membrane protein; Provisional
Probab=58.45 E-value=3e+02 Score=30.67 Aligned_cols=44 Identities=7% Similarity=-0.074 Sum_probs=32.4
Q ss_pred HHHHhHhhhhhhhhhhhcCCChHHHHHHHHHhHH----HhHHHHHHHH
Q 004845 494 SMVQALGFLGDFKLGHYMKVPPKSMFVVQLVGTI----VASTVYFGTA 537 (728)
Q Consensus 494 ~~~qa~~~~~DlK~G~y~~~pPr~~f~~QliG~i----vg~~v~~~v~ 537 (728)
..++..+.++-.=.|+-+++||=..+.+.+.|.. +|.++.+.++
T Consensus 287 vv~~idnil~P~l~g~~~~l~~~~il~~~~~G~~~fG~~G~~lgp~i~ 334 (368)
T PRK10983 287 VVGTLDNVIRPMLIRMGADLPMILILSGVIGGLIAFGMIGLFIGPVVL 334 (368)
T ss_pred HHHHhhheeeeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777777899999999999999988875 3455554444
No 13
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=57.75 E-value=1.6e+02 Score=31.54 Aligned_cols=53 Identities=11% Similarity=0.126 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhH-hhhhhhhhhhhcCCChHHHHHHHHHhH----HHhHHHHHHHHHH
Q 004845 487 FKTYGYISMVQAL-GFLGDFKLGHYMKVPPKSMFVVQLVGT----IVASTVYFGTAWW 539 (728)
Q Consensus 487 ~~~~~~~~~~qa~-~~~~DlK~G~y~~~pPr~~f~~QliG~----ivg~~v~~~v~~~ 539 (728)
...+.....+|-. +.++-.=.|+-+++||-..+.+.+.|. ++|.++++.++..
T Consensus 261 ~~~~~~~~i~~~~~~il~P~i~g~~~~i~p~~~l~~~~~g~~~fG~~G~il~~pi~~~ 318 (327)
T PF01594_consen 261 IVLIVFIVIQQLEDNILRPKIMGRSLGIHPLLILLAVIIGGYLFGFIGLILAPPILAV 318 (327)
T ss_pred HHHHHHHHHHHHhcccccchhhhcccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444455555544 455666689999999999999999987 4566666666543
No 14
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=29.52 E-value=63 Score=22.67 Aligned_cols=18 Identities=28% Similarity=0.818 Sum_probs=15.8
Q ss_pred HHHHhHHHHHHHHHHHhh
Q 004845 31 TWVLGLTSCCLLAFVNQF 48 (728)
Q Consensus 31 a~~lG~~~~~~~~~~n~y 48 (728)
+|++|+.+++.++.+|..
T Consensus 5 aWilG~~lA~~~~v~~a~ 22 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAM 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999988864
No 15
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=26.88 E-value=76 Score=21.93 Aligned_cols=18 Identities=28% Similarity=0.892 Sum_probs=15.6
Q ss_pred HHHHhHHHHHHHHHHHhh
Q 004845 31 TWVLGLTSCCLLAFVNQF 48 (728)
Q Consensus 31 a~~lG~~~~~~~~~~n~y 48 (728)
+|++|+++++.++.+|..
T Consensus 5 aWilG~~lA~~~~i~~a~ 22 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAM 22 (28)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 689999999999988863
No 16
>PRK14749 hypothetical protein; Provisional
Probab=26.59 E-value=78 Score=22.09 Aligned_cols=18 Identities=22% Similarity=0.562 Sum_probs=15.8
Q ss_pred HHHHhHHHHHHHHHHHhh
Q 004845 31 TWVLGLTSCCLLAFVNQF 48 (728)
Q Consensus 31 a~~lG~~~~~~~~~~n~y 48 (728)
+|++|+.+++.++.+|..
T Consensus 5 aWiLG~~lAc~f~ilna~ 22 (30)
T PRK14749 5 LWFVGILLMCSLSTLVLV 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 789999999999988864
No 17
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.42 E-value=45 Score=36.56 Aligned_cols=34 Identities=18% Similarity=0.443 Sum_probs=22.2
Q ss_pred cCCCC-hHHHHHHHHHHHHHHHhhhhcccccCCcc
Q 004845 401 YEAVP-QWWFHAILIITFALSLFTCEGFDKQFQLP 434 (728)
Q Consensus 401 y~evP-~ww~~~~~v~~~v~~i~~~~~~~~~~~lp 434 (728)
|...| +|+.+.++.+..++++++...|+..-...
T Consensus 183 yep~~~~~~vl~~~fvl~tlaivLFPLWP~~mR~g 217 (372)
T KOG2927|consen 183 YEPRPLMWQVLGVLFVLVTLAIVLFPLWPRRMRQG 217 (372)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHhcccCcHHHhcc
Confidence 55555 67777777777777888777885433333
No 18
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=26.34 E-value=2.1e+02 Score=29.71 Aligned_cols=44 Identities=11% Similarity=0.192 Sum_probs=24.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHHHHHHHHHH
Q 004845 401 YEAVPQWWFHAILIITFALSLFTCEGFDKQFQLPWWGLLLACAMAFFFT 449 (728)
Q Consensus 401 y~evP~ww~~~~~v~~~v~~i~~~~~~~~~~~lp~~~~~lal~l~~i~~ 449 (728)
|+.++.| .+..+++.+++.++.... ++-+|+.+++++.++++.+
T Consensus 24 dp~l~~~-ml~a~l~~~~v~v~ig~l----~~~~~~~~i~gi~~g~l~a 67 (224)
T PF13829_consen 24 DPKLPWL-MLGAFLGPIAVFVLIGLL----FGSWWYWLIIGILLGLLAA 67 (224)
T ss_pred CcchHHH-HHHHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHHHHH
Confidence 5555544 344444444444433333 3467778888888777755
No 19
>PF04982 HPP: HPP family; InterPro: IPR007065 These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of an alignment of the proteins is a motif HPP. The function of these proteins is uncertain but they may be transporters.
Probab=25.64 E-value=3.1e+02 Score=25.40 Aligned_cols=86 Identities=14% Similarity=0.230 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhHHHhHHHHHHHHHHHHHhhccccCCCCCCCCCCcccchhHHHHHhHhHHhhccccccccCCCCchhHHH
Q 004845 515 PKSMFVVQLVGTIVASTVYFGTAWWLLTSVEHICNPSLLPEGSPWTCPGDDVFYNASIIWGVVGPLRMFTNYGNYPQMNW 594 (728)
Q Consensus 515 Pr~~f~~QliG~ivg~~v~~~v~~~~l~~~~~~~~~~~~~~~~~~t~p~~~~~~~~sv~wg~~gp~~~f~~g~~y~~~~~ 594 (728)
||..+.+|+++.++|..+.... ..-.|
T Consensus 24 P~~vi~gh~isa~iG~~~~~~~-----------------------------------------------------~~~~~ 50 (120)
T PF04982_consen 24 PRNVIGGHLISALIGVLCVYLF-----------------------------------------------------GDPWW 50 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh-----------------------------------------------------ccHHH
Q ss_pred HHHHHHHHHHHHHHhhhhcCCcccccccchhHHhhhhcccCCcc-----------chhhhHHHHHHHHHHHHHHhhccc
Q 004845 595 FFLIGFLAPFPVWLLSRKFPEKKWIKNIHMPLLLAGPGSLPSAK-----------AVNYLSWGAVGIFFNYYVYRRFKG 662 (728)
Q Consensus 595 ~~liG~~~~i~~~l~~r~~p~~~~~~~i~~p~~~~g~~~~~p~~-----------~~~~~~~~~iG~~~~~~~~r~~~~ 662 (728)
...++..+.+.+-.+ .|..|+|..+.++-...... ..+...-+.++.+.+.+.+||||+
T Consensus 51 ~~alav~lai~~M~~---------~~~~HPPA~Atall~~l~~~~~~~~~~~~pVl~g~~il~~~a~~~~~l~~r~YP~ 120 (120)
T PF04982_consen 51 AAALAVGLAIVLMVL---------TRTVHPPAGATALLAVLGGASLGWGFVLIPVLLGSLILVVVALLFNNLIRRRYPK 120 (120)
T ss_pred HHHHHHHHHHHHHHH---------HcCCCCchhhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHcCccCCCCC
No 20
>COG5438 Predicted multitransmembrane protein [Function unknown]
Probab=25.18 E-value=7.2e+02 Score=27.87 Aligned_cols=81 Identities=7% Similarity=0.235 Sum_probs=41.6
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHhhccccCCCCCCCCCCcccchhHHHHHhHhHHhhccccccccCCCCchhHHHHH
Q 004845 517 SMFVVQLVGTIVASTVYFGTAWWLLTSVEHICNPSLLPEGSPWTCPGDDVFYNASIIWGVVGPLRMFTNYGNYPQMNWFF 596 (728)
Q Consensus 517 ~~f~~QliG~ivg~~v~~~v~~~~l~~~~~~~~~~~~~~~~~~t~p~~~~~~~~sv~wg~~gp~~~f~~g~~y~~~~~~~ 596 (728)
..+.++++=..+|+++..++- +-++..+.-. +++.. ....++.+++ .+| +++.|. + ......-
T Consensus 255 ~~~~~~viIg~LGAimDvais--IaSsi~El~e-----~n~~~---t~~~lfksgm---nIG-~DimGT--m-~NTL~la 317 (385)
T COG5438 255 GLFLAGVIIGSLGAIMDVAIS--IASSINELHE-----QNPNI---TVKELFKSGM---NIG-QDIMGT--M-TNTLLLA 317 (385)
T ss_pred hhHHHHHHHHHHHHHHHHHHH--HHHhHHHHHh-----cCCCc---cHHHHHHHHh---hhh-HHHHHH--H-HHHHHHH
Confidence 477888877778888776654 3334444322 22221 1222333333 133 333321 1 1122334
Q ss_pred HHHHHHHHHHHHhhhhcC
Q 004845 597 LIGFLAPFPVWLLSRKFP 614 (728)
Q Consensus 597 liG~~~~i~~~l~~r~~p 614 (728)
-.|..+|+.+|+.+-.+|
T Consensus 318 y~g~al~l~i~~~~~~~~ 335 (385)
T COG5438 318 YLGGALPLLILFLRNNYS 335 (385)
T ss_pred HHHhhHHHHHHHHHcCCc
Confidence 477788998888876665
No 21
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=21.63 E-value=9.5e+02 Score=27.11 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=15.7
Q ss_pred HHHHHHHHHhHHHhHHHH
Q 004845 516 KSMFVVQLVGTIVASTVY 533 (728)
Q Consensus 516 r~~f~~QliG~ivg~~v~ 533 (728)
|+-+.+|-+|++++++..
T Consensus 272 ~r~l~adGl~~i~aglfG 289 (415)
T TIGR00801 272 HRGVLADGLATLLAGLFG 289 (415)
T ss_pred cchHHHhhHHHHHHHhcC
Confidence 689999999999999864
No 22
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=20.55 E-value=5.2e+02 Score=29.73 Aligned_cols=91 Identities=13% Similarity=0.197 Sum_probs=42.9
Q ss_pred CChHHHHHHHHHHHHHHHhh-hhcccccCCcchHHHHHHHHHHHHHHhhhheeeeccCCCchhHHHHHHHHHhccCCchh
Q 004845 404 VPQWWFHAILIITFALSLFT-CEGFDKQFQLPWWGLLLACAMAFFFTLPVGVIQATTNLQPGLNIITEMVIGYMYPGKPL 482 (728)
Q Consensus 404 vP~ww~~~~~v~~~v~~i~~-~~~~~~~~~lp~~~~~lal~l~~i~~~~~g~~~a~t~~~~~l~~isqlv~g~i~pg~~~ 482 (728)
.++++|+...++.+++.++. ... ..+..|+ .--...+.++.++..+.+...++.++ +..++-.. +-.
T Consensus 251 ~~~~~~~~~~~l~~~~li~g~~~~---~~~~~~~-~~~~~~~fl~~~ii~~~i~~~~~~~~--~~~~~~F~------~G~ 318 (465)
T PF03606_consen 251 KRPKLYLLLPVLPFVLLIYGFSFV---IIKIKWY-FPEIAALFLIIGIIIGLIRHRSGKSP--NEIVKAFF------KGM 318 (465)
T ss_pred cccceeehHHHHHHHHHHhchhhh---hcccccc-HHHHHHHHHHHHHHHHHHHhhccCCH--hHHHHHHH------HHH
Confidence 46788888888888765431 111 1223333 23333344444555555554444433 11111111 113
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhh
Q 004845 483 ANVAFKTYGYISMVQALGFLGDFK 506 (728)
Q Consensus 483 anl~~~~~~~~~~~qa~~~~~DlK 506 (728)
.+++..+....-+.-+.-+++|.|
T Consensus 319 ~~~~~~a~vVgla~ai~v~~~~~~ 342 (465)
T PF03606_consen 319 GDMLSFALVVGLARAISVFMEGGK 342 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCc
Confidence 444444444444455556666665
Done!