Query 004845
Match_columns 728
No_of_seqs 114 out of 1183
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 07:37:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nq2_A Hypothetical ABC transp 37.6 3.7E+02 0.013 28.0 17.8 78 504-611 224-302 (337)
2 3iyz_A Aquaporin-4; water tran 27.8 5.5E+02 0.019 26.9 15.4 21 513-533 171-191 (340)
3 4dve_A Biotin transporter BIOY 10.5 3.9E+02 0.013 25.8 6.0 60 622-682 80-143 (198)
4 1v54_K IHQ, cytochrome C oxida 10.2 2.6E+02 0.009 21.2 3.5 36 657-695 3-38 (56)
5 2l8s_A Integrin alpha-1; trans 9.7 4E+02 0.014 20.3 4.4 36 264-299 2-37 (54)
6 2jwa_A Receptor tyrosine-prote 9.3 1.9E+02 0.0064 21.2 2.4 19 644-662 23-41 (44)
7 2y69_K Cytochrome C oxidase po 8.8 2.9E+02 0.0099 22.6 3.5 42 658-706 28-69 (80)
8 2ks1_B Epidermal growth factor 7.8 2.9E+02 0.0098 20.2 2.8 17 646-662 25-41 (44)
9 2l2t_A Receptor tyrosine-prote 7.7 2.9E+02 0.01 20.1 2.8 17 646-662 24-40 (44)
10 4g1u_A Hemin transport system 6.6 1.9E+03 0.066 22.7 18.7 94 434-528 168-268 (357)
No 1
>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=37.56 E-value=3.7e+02 Score=27.97 Aligned_cols=78 Identities=12% Similarity=-0.050 Sum_probs=42.8
Q ss_pred hhhhhhhcCCChHHHHHHHHHhHHHhHHHHHHHHHHHHHhhccccCCCCCCCCCCcccchhHHHHHhHhHHhhccccccc
Q 004845 504 DFKLGHYMKVPPKSMFVVQLVGTIVASTVYFGTAWWLLTSVEHICNPSLLPEGSPWTCPGDDVFYNASIIWGVVGPLRMF 583 (728)
Q Consensus 504 DlK~G~y~~~pPr~~f~~QliG~ivg~~v~~~v~~~~l~~~~~~~~~~~~~~~~~~t~p~~~~~~~~sv~wg~~gp~~~f 583 (728)
|=..++-+|+++|.....-++-+.+-+.+++.+. + +- .=-.+-.|+.. ++++
T Consensus 224 g~~~A~~lGv~v~~~r~~~l~l~all~a~ava~v--------G---~I---~fvGLivPhia--------------r~l~ 275 (337)
T 2nq2_A 224 DEKEAKALGVKMAPLRWLVIFLSGSLVACQVAIS--------G---SI---GWVGLIIPHLS--------------RMLV 275 (337)
T ss_dssp CHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH--------C---CC---CSSTTHHHHHH--------------HHHH
T ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHh--------H---HH---HHHHHHHHHHH--------------HHHh
Confidence 5567899999999988766554444443333222 1 11 00112234321 2333
Q ss_pred cCCCCch-hHHHHHHHHHHHHHHHHHhhh
Q 004845 584 TNYGNYP-QMNWFFLIGFLAPFPVWLLSR 611 (728)
Q Consensus 584 ~~g~~y~-~~~~~~liG~~~~i~~~l~~r 611 (728)
++ .|+ .++.+.++|+++-+.--.+.|
T Consensus 276 g~--~~~~llp~s~l~Ga~~ll~ad~lar 302 (337)
T 2nq2_A 276 GA--NHQSLLPCTMLVGATYMLLVDNVAR 302 (337)
T ss_dssp CS--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC--ChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 32 343 466788888877776666654
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=27.76 E-value=5.5e+02 Score=26.91 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=14.5
Q ss_pred CChHHHHHHHHHhHHHhHHHH
Q 004845 513 VPPKSMFVVQLVGTIVASTVY 533 (728)
Q Consensus 513 ~pPr~~f~~QliG~ivg~~v~ 533 (728)
.++-..|..|+++|++=.++.
T Consensus 171 ~s~~~~f~~E~i~Tf~Lv~~I 191 (340)
T 3iyz_A 171 LTAGHGLLVELIITFQLVFTI 191 (340)
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 355678899999887655443
No 3
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=10.51 E-value=3.9e+02 Score=25.78 Aligned_cols=60 Identities=20% Similarity=0.124 Sum_probs=26.3
Q ss_pred cchhHHhhh---hcccCCccchhhhHHHHHHHHHHHH-HHhhccccccchhhhhhHhHHhhHHHH
Q 004845 622 IHMPLLLAG---PGSLPSAKAVNYLSWGAVGIFFNYY-VYRRFKGWWARHTYILSAALDAGVAFM 682 (728)
Q Consensus 622 i~~p~~~~g---~~~~~p~~~~~~~~~~~iG~~~~~~-~~r~~~~w~~ky~~vlaagL~aG~~i~ 682 (728)
+..|+++.| ++.+...|. +|-.++.++.++..+ .+|.+.+..++.-..+..++..|..+.
T Consensus 80 ~GlPVFagg~gG~~~l~gPTg-GYLiGF~~aA~v~G~l~~~~~~~~~~~~~~~~~~~~l~G~~~i 143 (198)
T 4dve_A 80 IGLPVLTGGNGGAASFLGPSG-GYRIAWLFTPFLIGFFLKKLKITTSQNWFGELIIVLLFGVIFV 143 (198)
T ss_dssp HTCCCBTTTBCCSGGGGSTTH-HHHHHHHHHHHHHHHHHHHTTGGGSSCHHHHHHHHHHHHTHHH
T ss_pred HcCccccCCCCchhHHhcchh-HHHHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHHHHHHHH
Confidence 356777655 444443333 444555554444444 444332221221122344555565544
No 4
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=10.19 E-value=2.6e+02 Score=21.25 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=22.8
Q ss_pred HhhccccccchhhhhhHhHHhhHHHHHHHHHHHHHhCCC
Q 004845 657 YRRFKGWWARHTYILSAALDAGVAFMGVFLYFTLQSQDI 695 (728)
Q Consensus 657 ~r~~~~w~~ky~~vlaagL~aG~~i~glv~~~~~~~~gv 695 (728)
+|+.+...+||.-.+ |.+|...+..+-.+.++-.|+
T Consensus 3 ~k~~p~FHdKYGn~~---L~~Ga~FC~a~W~y~~TQ~GI 38 (56)
T 1v54_K 3 QKRAPDFHDKYGNAV---LASGATFCVAVWVYMATQIGI 38 (56)
T ss_dssp ---CCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHSCC
T ss_pred cccCcchhhhcCcee---eecchhhhHhhHhhhheeece
Confidence 355666778997654 455667777776667776666
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=9.68 E-value=4e+02 Score=20.33 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=24.1
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 004845 264 GSPLATPFFAIANILVGFFLFLYILIPIAYWCNAFE 299 (728)
Q Consensus 264 g~gli~p~~~~~~~~~G~~l~~~ii~P~~~~~n~~~ 299 (728)
|.|--+|+|..+-..+|+++-..++.-++|.-|.+.
T Consensus 2 ~~~~~vp~WiIi~svl~GLLLL~Lii~~LwK~GFFK 37 (54)
T 2l8s_A 2 GLPGRVPLWVILLSAFAGLLLLMLLILALWKIGFFK 37 (54)
T ss_dssp CCCCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCccCchHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 556678888766666666665566665777777653
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=9.30 E-value=1.9e+02 Score=21.19 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 004845 644 SWGAVGIFFNYYVYRRFKG 662 (728)
Q Consensus 644 ~~~~iG~~~~~~~~r~~~~ 662 (728)
..+++|..+..|+|||+.+
T Consensus 23 l~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhheehhhhh
Confidence 4557777788899998765
No 7
>2y69_K Cytochrome C oxidase polypeptide 7B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=8.82 E-value=2.9e+02 Score=22.59 Aligned_cols=42 Identities=17% Similarity=0.338 Sum_probs=26.7
Q ss_pred hhccccccchhhhhhHhHHhhHHHHHHHHHHHHHhCCCCCCccccCCCC
Q 004845 658 RRFKGWWARHTYILSAALDAGVAFMGVFLYFTLQSQDIFGPEWWGLAAT 706 (728)
Q Consensus 658 r~~~~w~~ky~~vlaagL~aG~~i~glv~~~~~~~~gv~~~~wwg~n~~ 706 (728)
|+.+...+||.-.+ |++|.+.+..+-.+.++-.|+ +| +|.++
T Consensus 28 k~~pdFHdKYGn~~---L~~Ga~FC~a~W~y~~TQ~GI---eW-nlSPV 69 (80)
T 2y69_K 28 KRAPDFHDKYGNAV---LASGATFCVAVWVYMATQIGI---EW-NPSPV 69 (80)
T ss_dssp --CCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHSCC---CC-CCCCT
T ss_pred cCCCchhhhcCcee---eecchhHHHhhHHHhheecce---ee-cCCcc
Confidence 34455678997655 556777777777777777776 44 43455
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=7.82 E-value=2.9e+02 Score=20.16 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhccc
Q 004845 646 GAVGIFFNYYVYRRFKG 662 (728)
Q Consensus 646 ~~iG~~~~~~~~r~~~~ 662 (728)
.++++...+|+|||+.+
T Consensus 25 ~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 25 LVVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHhhhhHhh
Confidence 35556667888887765
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=7.68 E-value=2.9e+02 Score=20.12 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhccc
Q 004845 646 GAVGIFFNYYVYRRFKG 662 (728)
Q Consensus 646 ~~iG~~~~~~~~r~~~~ 662 (728)
.+++....+|+|||+.+
T Consensus 24 ~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 24 VIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 35556667888887765
No 10
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=6.55 E-value=1.9e+03 Score=22.67 Aligned_cols=94 Identities=15% Similarity=0.043 Sum_probs=46.7
Q ss_pred chHHHHHHHHHHHHHHhhhheeeeccCCCchhHHHHHHHHHhccCCchhHHHHHHHHH------HHHHHHhH-hhhhhhh
Q 004845 434 PWWGLLLACAMAFFFTLPVGVIQATTNLQPGLNIITEMVIGYMYPGKPLANVAFKTYG------YISMVQAL-GFLGDFK 506 (728)
Q Consensus 434 p~~~~~lal~l~~i~~~~~g~~~a~t~~~~~l~~isqlv~g~i~pg~~~anl~~~~~~------~~~~~qa~-~~~~DlK 506 (728)
|.-.++..++++.+++.....+.-..|.+ ....+..-.+|.+..-+...-.....+. .-...... -+.-|=.
T Consensus 168 ~~~liL~Giavs~~~~a~~~~l~~~~~~~-~~~~l~~Wl~GSl~~~~w~~l~~~~~~~~v~l~~~~~~~r~L~~l~lGe~ 246 (357)
T 4g1u_A 168 LARLLLAGIAINALCGAAVGVLTYISDDQ-QLRQFSLWSMGSLGQAQWSTLLVASSLILPTCILGLLQARQLNLLQLGDE 246 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSH-HHHHHHHHTTTCCTTCCHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCHH-HHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCHH
Confidence 44556777888888876655544333331 2333344444444433221111111111 11112222 2344566
Q ss_pred hhhhcCCChHHHHHHHHHhHHH
Q 004845 507 LGHYMKVPPKSMFVVQLVGTIV 528 (728)
Q Consensus 507 ~G~y~~~pPr~~f~~QliG~iv 528 (728)
.++-+|+++|+....-++-+.+
T Consensus 247 ~A~sLGv~v~~~r~~~l~l~al 268 (357)
T 4g1u_A 247 EAHYLGVNVRQAKLRLLLLSAI 268 (357)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHH
Confidence 8999999999887765554433
Done!