Query 004845
Match_columns 728
No_of_seqs 114 out of 1183
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 07:37:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004845.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004845hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90l_ f.23.24.1 (L:) PetL su 5.4 1.7E+02 0.012 17.7 2.0 18 34-51 8-25 (32)
2 d1q90m_ f.23.25.1 (M:) PetM su 4.1 3.1E+02 0.023 16.7 2.6 14 673-686 2-15 (34)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 3.4 3.6E+02 0.026 17.0 2.5 13 436-448 19-31 (37)
4 d1zava1 d.58.62.1 (A:1-177) Ri 2.8 4.5E+02 0.033 22.1 3.6 28 506-533 127-154 (177)
5 d1v54k_ f.23.5.1 (K:) Mitochon 2.8 6.2E+02 0.045 17.0 3.4 31 662-695 3-33 (49)
6 d1hvwa_ g.3.6.2 (A:) Atracotox 2.8 1.8E+02 0.013 16.7 0.5 14 95-110 6-19 (26)
7 d1gvda_ a.4.1.3 (A:) c-Myb, DN 2.7 1.8E+02 0.013 19.8 0.4 8 97-104 4-11 (52)
8 d1v54l_ f.23.6.1 (L:) Mitochon 2.7 3.8E+02 0.028 17.8 2.1 16 143-158 21-36 (46)
9 d1j4na_ f.19.1.1 (A:) Aquapori 2.4 1.3E+03 0.097 19.7 6.8 18 520-537 101-118 (249)
10 d1v54g_ f.23.2.1 (G:) Mitochon 2.4 7.5E+02 0.055 18.4 3.9 32 20-51 7-39 (84)
No 1
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.44 E-value=1.7e+02 Score=17.69 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=14.9
Q ss_pred HhHHHHHHHHHHHhhhcc
Q 004845 34 LGLTSCCLLAFVNQFFGY 51 (728)
Q Consensus 34 lG~~~~~~~~~~n~yf~l 51 (728)
+|+++++++-....|+|+
T Consensus 8 vglligal~~tlgiylgl 25 (32)
T d1q90l_ 8 VGLLIGALVFTLGIYLGL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 688888888888888875
No 2
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.15 E-value=3.1e+02 Score=16.70 Aligned_cols=14 Identities=36% Similarity=0.261 Sum_probs=9.9
Q ss_pred HhHHhhHHHHHHHH
Q 004845 673 AALDAGVAFMGVFL 686 (728)
Q Consensus 673 agL~aG~~i~glv~ 686 (728)
|++++|+++..+-+
T Consensus 2 a~fiagta~tmig~ 15 (34)
T d1q90m_ 2 AEFIAGTALTMVGM 15 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CceecchhHHHHHH
Confidence 67888888765443
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.45 E-value=3.6e+02 Score=16.99 Aligned_cols=13 Identities=46% Similarity=0.818 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 004845 436 WGLLLACAMAFFF 448 (728)
Q Consensus 436 ~~~~lal~l~~i~ 448 (728)
|++++..+++.+|
T Consensus 19 ~GlLlifvl~vLF 31 (37)
T d2axtl1 19 LGLLLILVLALLF 31 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 4
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=2.82 E-value=4.5e+02 Score=22.10 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=23.5
Q ss_pred hhhhhcCCChHHHHHHHHHhHHHhHHHH
Q 004845 506 KLGHYMKVPPKSMFVVQLVGTIVASTVY 533 (728)
Q Consensus 506 K~G~y~~~pPr~~f~~QliG~ivg~~v~ 533 (728)
++-.+.+.|.|...++|++|.+-+..-.
T Consensus 127 ~i~~la~LPs~eel~a~l~~~L~ap~~~ 154 (177)
T d1zava1 127 EVENIAKLPSKEELYAMLVGRVKAPITG 154 (177)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhHHHH
Confidence 4677899999999999999998776544
No 5
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.81 E-value=6.2e+02 Score=16.96 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=19.5
Q ss_pred ccccchhhhhhHhHHhhHHHHHHHHHHHHHhCCC
Q 004845 662 GWWARHTYILSAALDAGVAFMGVFLYFTLQSQDI 695 (728)
Q Consensus 662 ~w~~ky~~vlaagL~aG~~i~glv~~~~~~~~gv 695 (728)
...+||.-.+ |.+|..++.-+-.+.++-.|+
T Consensus 3 ~FHdKYGn~v---L~~Ga~fc~avW~yv~TQ~gI 33 (49)
T d1v54k_ 3 DFHDKYGNAV---LASGATFCVAVWVYMATQIGI 33 (49)
T ss_dssp CHHHHHHHHH---HHHHHHHHHHHHHHHHHHSCC
T ss_pred ccccccCcEE---Eecccchhhhhhhheeeeeee
Confidence 4457886544 455666766666666666666
No 6
>d1hvwa_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=2.78 E-value=1.8e+02 Score=16.66 Aligned_cols=14 Identities=29% Similarity=0.517 Sum_probs=10.0
Q ss_pred CCCCCCcccceeeehh
Q 004845 95 NPGPFNLKEHVLITIF 110 (728)
Q Consensus 95 Npgpft~kE~~iiq~~ 110 (728)
.|.|+| ||.+.|..
T Consensus 6 qpcpyn--enccsqsc 19 (26)
T d1hvwa_ 6 QPCPYN--ENCCSQSC 19 (26)
T ss_dssp SBCSST--TSBSSCCE
T ss_pred CcCCCC--cccccccc
Confidence 356776 99888764
No 7
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.68 E-value=1.8e+02 Score=19.81 Aligned_cols=8 Identities=38% Similarity=0.891 Sum_probs=3.2
Q ss_pred CCCCcccc
Q 004845 97 GPFNLKEH 104 (728)
Q Consensus 97 gpft~kE~ 104 (728)
||||..|-
T Consensus 4 g~WT~eED 11 (52)
T d1gvda_ 4 GPWTKEED 11 (52)
T ss_dssp CSCCHHHH
T ss_pred CCCCHHHH
Confidence 34444443
No 8
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.66 E-value=3.8e+02 Score=17.85 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=10.2
Q ss_pred HHHHHhHhhHHHHhhc
Q 004845 143 LVQTTQLLGYGWAGLF 158 (728)
Q Consensus 143 ~~ls~~llG~~~Ag~l 158 (728)
+..-+..+|.+||.|+
T Consensus 21 la~m~~~fGsgfa~PF 36 (46)
T d1v54l_ 21 LAMMTLFFGSGFAAPF 36 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchH
Confidence 3344556788888764
No 9
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.40 E-value=1.3e+03 Score=19.68 Aligned_cols=18 Identities=39% Similarity=0.626 Sum_probs=13.9
Q ss_pred HHHHHhHHHhHHHHHHHH
Q 004845 520 VVQLVGTIVASTVYFGTA 537 (728)
Q Consensus 520 ~~QliG~ivg~~v~~~v~ 537 (728)
.+|++|.++|+.+...++
T Consensus 101 ~aQ~lGa~~g~~~~~~~~ 118 (249)
T d1j4na_ 101 IAQCVGAIVATAILSGIT 118 (249)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred eHHHHHHHHHHhhheeec
Confidence 789999999887765543
No 10
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.36 E-value=7.5e+02 Score=18.45 Aligned_cols=32 Identities=19% Similarity=0.138 Sum_probs=22.5
Q ss_pred CCCCCCcchHhHHHH-hHHHHHHHHHHHhhhcc
Q 004845 20 DDPTIPALTFRTWVL-GLTSCCLLAFVNQFFGY 51 (728)
Q Consensus 20 dd~~~p~lT~Ra~~l-G~~~~~~~~~~n~yf~l 51 (728)
++...-.-++|-+.+ +.+-++++|.+|.|+.-
T Consensus 7 ~ha~~~~~lWkkis~~va~P~i~l~~~n~~~~~ 39 (84)
T d1v54g_ 7 DHGGTGARTWRFLTFGLALPSVALCTLNSWLHS 39 (84)
T ss_dssp CCSCCCHHHHHHHHHHTHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333344567887766 66788888999998743
Done!