BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004847
(727 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1
SV=1
Length = 1282
Score = 474 bits (1221), Expect = e-133, Method: Compositional matrix adjust.
Identities = 257/546 (47%), Positives = 336/546 (61%), Gaps = 55/546 (10%)
Query: 154 DCSKIKSYEDLKSWKQEEVYESIRDRFVTGDWSKAAQRNQVSKGKSEDDDSDDAVYGDYE 213
DCS+ E W EEV SIRD FVTG W +V D+ +YGD+E
Sbjct: 733 DCSRF-LVEAPHDWDLEEVMNSIRDCFVTGKWEDDKDAAKVLA-------EDEELYGDFE 784
Query: 214 DLETGEKQEGQRKDNSGCEGIE---------NEDESAVEERRLKKLSLRAKFDVQYDGSE 264
DLETG+ +G+ N+ E IE +E+ESA ++ KK L+ FD +YD E
Sbjct: 785 DLETGDVHKGKSGPNTQNEDIEKEVKEEIDPDEEESAKKKHLDKKRKLKEMFDAEYDEGE 844
Query: 265 SPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTG 324
S D +K E++ + Q+N AE D D+ R++ EGFR G
Sbjct: 845 ST---------------------YFDDLKGEMQKQAQLNRAEFEDQDDEARVQYEGFRPG 883
Query: 325 TYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPI 384
Y+R+EI +VP E V+ FDP +P+++GG+G E NVGY+Q+RLK+HRW+ KK+LKSRDPI
Sbjct: 884 MYVRIEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGYVQMRLKKHRWY-KKILKSRDPI 942
Query: 385 IVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNN 444
I S+GWRRFQTIP+Y IED +GR R+LKYTP+HMHC A FWGP+ P TG +A+Q++S
Sbjct: 943 IFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWGPITPQGTGFLAIQSVSGI 1002
Query: 445 QASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVR 504
FRIAAT VVL+ + +KI KK+KL G+P KIFK T+ IK MF S LEVA+ EG +R
Sbjct: 1003 MPDFRIAATGVVLDLDKSIKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIR 1062
Query: 505 TVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRF 564
TVSGIRGQ+KKA + EG R +FED++LMSDIVFMR W V IP F
Sbjct: 1063 TVSGIRGQIKKALRAP-------------EGAFRASFEDKLLMSDIVFMRTWYPVSIPAF 1109
Query: 565 YNPLTTALQP--RDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKS 622
YNP+T+ L+P W GM+T +LR H + + NK+SLYKPI R + FN L IPK+
Sbjct: 1110 YNPVTSLLKPVGEKDTWSGMRTTGQLRLAHGVRLKANKDSLYKPILRQKKHFNSLHIPKA 1169
Query: 623 LQAALPFESKPK-DIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQ 681
LQ ALPF++KPK K P R AV+ EPHERK+ L L + ++KMKK K ++
Sbjct: 1170 LQKALPFKNKPKTQAKAGKVPKDRRRPAVIREPHERKILALLDALSTVHSQKMKKAKEQR 1229
Query: 682 QHRKKE 687
KE
Sbjct: 1230 HLHNKE 1235
>sp|O94653|BMS1_SCHPO Ribosome biogenesis protein bms1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=bms1 PE=1 SV=2
Length = 1121
Score = 407 bits (1046), Expect = e-112, Method: Compositional matrix adjust.
Identities = 249/648 (38%), Positives = 362/648 (55%), Gaps = 52/648 (8%)
Query: 85 LKLTKSSLRRCANLIQLVYGKSTSTSETLSKEVQDSIEGEESD------EDEFFKPKVEG 138
L ++S RR N+ ++ Y +S S + ++ +S + ESD E++FFK
Sbjct: 501 LAYSQSGKRR-RNIQKIFYDESLSPKDAYAEYKGESAKSSESDLVVSDDEEDFFKVSKVA 559
Query: 139 NKLREGLDSGIVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVTGDWSKAAQRNQVSKGK 198
N E + S N + + +S K W+ ++ ++ RF+TG + +
Sbjct: 560 N---ESISS---NHEKLMESESDRLSKKWENPQLLAQLKSRFITGSLLDSIE-------- 605
Query: 199 SEDDDSDDAVYGDYEDLETGEKQEGQRKDNSGCEGIENEDESAVEERRLKKLSLRAKFDV 258
+++ S D GD+EDLE E + S + E+E + +E D
Sbjct: 606 GQEEVSQDDEEGDFEDLEDEENSSDNEMEESSGSSVTAENEESADE-----------VDF 654
Query: 259 QYDGSESPEEEMNEKDGAKFHC-GQP--NEIGLVDQMKEEIEFRKQMNIAELNDLDEVTR 315
Q + E+ ++ + + G P ++ + KE+I + +N D+D +R
Sbjct: 655 QTEREENARKKEELRLRFEEEDRGDPEKKDVDWYTEEKEKIARQLVINREAFEDMDPESR 714
Query: 316 LELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHK 375
E+EG+R GTY+R+ I+DVPFE VE+FD +PV+VGG+ EQ G +QVR+KRHRW HK
Sbjct: 715 AEIEGYRAGTYVRIVINDVPFEFVEHFDSRYPVVVGGLLPNEQRYGLVQVRIKRHRW-HK 773
Query: 376 KVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGV 435
K+LK+ DP+I S+GWRRFQ+IPVY+I D R+RMLKYTPEHMHC TF+GP P +G
Sbjct: 774 KILKTNDPLIFSMGWRRFQSIPVYSISDSRTRNRMLKYTPEHMHCFGTFYGPFVAPNSGF 833
Query: 436 VAVQNLSNNQA---SFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSD 492
AVQ+++N+ A SFRIAAT VL + I KK+KL G P KIFK TA IK MF+S
Sbjct: 834 CAVQSVANSFAKAGSFRIAATGSVLNIDQSTDIVKKLKLTGVPYKIFKNTAFIKKMFSSP 893
Query: 493 LEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVF 552
LEVA+ EG +RTVSGIRGQVKKA +E G+ R TFED+ILMSDIVF
Sbjct: 894 LEVAKFEGANIRTVSGIRGQVKKAVDQEHGH-------------FRATFEDKILMSDIVF 940
Query: 553 MRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPR 612
+R W V++ +F +T L+ W GM+ E+R E L P+ NS Y+ I R R
Sbjct: 941 LRAWYPVQVRKFCTMVTNLLETDKTEWNGMRLTGEVRHELGLKTPLRPNSQYQEIVRPSR 1000
Query: 613 KFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNE 672
FNPL +P SLQA LPF S+ K + R +P +R V++ ERKV L Q++ + +
Sbjct: 1001 HFNPLKVPASLQAQLPFNSRQKALRPRSKPTYMQKRTVLLNAEERKVRDLLQKVMTLHTD 1060
Query: 673 KMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQDKLMKK 720
K KRK K+ + K+EQ +++REE+ E + + K +++
Sbjct: 1061 KEAKRKAKKAAEHERYHKRMQKEEQAYIEKKREEKAEWFAQHGKRLRQ 1108
>sp|Q08965|BMS1_YEAST Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BMS1 PE=1 SV=1
Length = 1183
Score = 363 bits (933), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 238/672 (35%), Positives = 370/672 (55%), Gaps = 78/672 (11%)
Query: 83 NELKLTKSSLRRCANLIQLVYGKSTSTSETLSK------EVQDSIEGEESDEDEFFKPKV 136
N+LK T+S +R N+ +L+Y + S E + + + +D + EE +D+FF+ K
Sbjct: 535 NKLKKTESK-KRTWNIGKLIYMDNISPEECIRRWRGEDDDSKDESDIEEDVDDDFFRKK- 592
Query: 137 EGNKLREGLDSGIVNTDDCSKIKSYEDL-----KSWKQEEVYESIRDRFVTGDWSKAAQR 191
+G +EG V D K Y D K WK ++I++RF+ A
Sbjct: 593 DGTVTKEGNKDHAV---DLEKFVPYFDTFEKLAKKWKS---VDAIKERFLG-----AGIL 641
Query: 192 NQVSKGKSEDDDSDDAVYGDYEDLETGEKQEGQRKDN----------------------S 229
+K KS+ ++ + +YGD+EDLE G E Q +DN +
Sbjct: 642 GNDNKTKSDSNEGGEELYGDFEDLEDGNPSE-QAEDNSDKESEDEDENEDTNGDDDNSFT 700
Query: 230 GCEGIENEDESAVEERRL---KKLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEI 286
+ E +D + +ER + KK LRA+F+++ + ++E NE D
Sbjct: 701 NFDAEEKKDLTMEQEREMNAAKKEKLRAQFEIEEGENFKEDDENNEYDT----------- 749
Query: 287 GLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCH 346
+ K +I + ++N E ++ R +EGF+ G+Y+R+ VP E V+ F+P
Sbjct: 750 -WYELQKAKISKQLEINNIEYQEMTPEQRQRIEGFKAGSYVRIVFEKVPMEFVKNFNPKF 808
Query: 347 PVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSG 406
P+++GG+ E G ++ RL+RHRW HKK+LK+ DP+++S+GWRRFQT+P+Y D
Sbjct: 809 PIVMGGLLPTEIKFGIVKARLRRHRW-HKKILKTNDPLVLSLGWRRFQTLPIYTTTDSRT 867
Query: 407 RHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQAS--FRIAATAVVLEFNHEVK 464
R RMLKYTPEH +C A F+GPL P T VQ ++N+ FRIAAT +V E + ++
Sbjct: 868 RTRMLKYTPEHTYCNAAFYGPLCSPNTPFCGVQIVANSDTGNGFRIAATGIVEEIDVNIE 927
Query: 465 IKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQ 524
I KK+KLVG+P KIFK TA IKDMF+S +EVA+ EG +++TVSGIRG++K+A ++
Sbjct: 928 IVKKLKLVGFPYKIFKNTAFIKDMFSSAMEVARFEGAQIKTVSGIRGEIKRAL-----SK 982
Query: 525 PKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKT 584
P EG R FED+ILMSDIV +R W V + +FYNP+T+ L W+G++
Sbjct: 983 P--------EGHYRAAFEDKILMSDIVILRSWYPVRVKKFYNPVTSLLLKEKTEWKGLRL 1034
Query: 585 VAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLL 644
++R NL P N +S Y I R R FN L +PK++Q LPF+S+ + +K+
Sbjct: 1035 TGQIRAAMNLETPSNPDSAYHKIERVERHFNGLKVPKAVQKELPFKSQIHQMKPQKKKTY 1094
Query: 645 ENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQR 704
+RAVV+ E+K Q++ I K KRK ++ ++KE + AK E+ +R +
Sbjct: 1095 MAKRAVVLGGDEKKARSFIQKVLTISKAKDSKRKEQKASQRKERLKKLAKMEEEKSQRDK 1154
Query: 705 EERRERYREQDK 716
E+++E + + K
Sbjct: 1155 EKKKEYFAQNGK 1166
>sp|A8MV67|YO021_HUMAN Putative BMS1-like protein ENSP00000383088 OS=Homo sapiens PE=5
SV=1
Length = 101
Score = 155 bits (391), Expect = 1e-36, Method: Composition-based stats.
Identities = 65/101 (64%), Positives = 84/101 (83%), Gaps = 1/101 (0%)
Query: 326 YLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPII 385
Y+R+EI +VP E V+ DP +P+++GG+G E NVGY+Q+RLK+HRW+ KK+LKSRDPII
Sbjct: 2 YVRVEIENVPCEFVQNIDPHYPIILGGLGNSEGNVGYVQMRLKKHRWY-KKILKSRDPII 60
Query: 386 VSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWG 426
S+GWRRFQTIP+Y IED +GR R+LKYTP+HMHC A FW
Sbjct: 61 FSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWA 101
>sp|A8MXU9|YO022_HUMAN Putative BMS1-like protein ENSP00000383048 OS=Homo sapiens PE=5
SV=1
Length = 101
Score = 152 bits (383), Expect = 1e-35, Method: Composition-based stats.
Identities = 63/101 (62%), Positives = 83/101 (82%), Gaps = 1/101 (0%)
Query: 326 YLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPII 385
Y+R+EI +VP E V+ DP +P+++GG+G E NVGY+++ LK+HRW+ KK+LKSRDPII
Sbjct: 2 YVRVEIENVPCEFVQNIDPHYPIILGGLGNSEGNVGYVEMHLKKHRWY-KKILKSRDPII 60
Query: 386 VSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWG 426
S+GWRRFQTIP+Y IED +GR R+LKYTP+HMHC A FW
Sbjct: 61 FSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWA 101
>sp|A8MTN0|YI027_HUMAN Putative BMS1-like protein ENSP00000382360 OS=Homo sapiens PE=5
SV=1
Length = 101
Score = 149 bits (375), Expect = 1e-34, Method: Composition-based stats.
Identities = 62/101 (61%), Positives = 84/101 (83%), Gaps = 1/101 (0%)
Query: 326 YLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPII 385
Y+R+EI +VP E V+ FDP +P+++GG+G E NVG++Q+RLK+HRW+ KK+LKS+DPII
Sbjct: 2 YVRVEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGHVQMRLKKHRWY-KKILKSQDPII 60
Query: 386 VSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWG 426
S+GWRRFQTI +Y IED +GR R+LKYTP+H+HC A FW
Sbjct: 61 FSVGWRRFQTILLYYIEDHNGRQRLLKYTPQHIHCGAAFWA 101
>sp|Q5SWD9|TSR1_MOUSE Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1
PE=2 SV=1
Length = 803
Score = 96.3 bits (238), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 132/285 (46%), Gaps = 24/285 (8%)
Query: 283 PNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYF 342
P + + Q + + RK++ E+ E EG G Y+ + + DVP +VEYF
Sbjct: 520 PRDYARIFQFQNFVNTRKRI-------FKEIEEKEAEGAEVGWYVTLHVSDVPVSVVEYF 572
Query: 343 DPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIE 402
P++ + EQ + + + + R+ + + +K+++ +I G+RRF+ P+++
Sbjct: 573 RQGAPLIAFSLLPYEQKMSVLNMVVSRNPG-NTEPVKAKEELIFHCGFRRFRASPLFSQH 631
Query: 403 DRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHE 462
+ +H+ ++ + T + P+ P V+ + N S + AT + + +
Sbjct: 632 TAADKHKFQRFLTADAAFVVTVFAPITFPPASVLLFKQRRNGMHS--LIATGHLFSVDPD 689
Query: 463 VKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIG 522
+ K++ L G+P KIF K A+++ MF + +V + E+RT G RG + KE +G
Sbjct: 690 RMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVMWFKPVELRTKWGRRGHI----KEPLG 745
Query: 523 NQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNP 567
G +C+F+ ++ D V M + V Y+P
Sbjct: 746 TH----------GHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYDP 780
>sp|Q5XGY1|TSR1_XENLA Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1
PE=2 SV=1
Length = 815
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 123/261 (47%), Gaps = 21/261 (8%)
Query: 319 EGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVL 378
EG G Y+ + I VP ++E+F P+++ + EQ + M + ++RH + + +
Sbjct: 561 EGAMVGWYVTVHISAVPVSVMEHFKHGLPLVLCSLLPHEQKMSVMNMLVRRHPG-NNEPI 619
Query: 379 KSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAV 438
K+++ +I G+RRF+ P+++ + +H+ ++ + T + P+ P V+
Sbjct: 620 KAKEELIFHCGFRRFRASPLFSQHSSADKHKSERFLRSDTSVVVTVYAPITFPPASVLVF 679
Query: 439 QNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQC 498
+ N + AT +L N + + K+I L G+P KI K+TA+++ MF + +V
Sbjct: 680 KQRYNGMQD--LVATGSLLNVNPDRIVIKRIVLSGHPFKIMKRTAVVRYMFFNREDVLWF 737
Query: 499 EGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWAD 558
+ E+RT G RG + KE +G G +C F+ ++ D V M +
Sbjct: 738 KPVELRTKWGRRGHI----KEPLGTH----------GHMKCHFDGQLKSQDTVLMNLYKR 783
Query: 559 VEIPRFYNPLTTALQPRDKIW 579
V ++P PR W
Sbjct: 784 VYPKWTFDPYV----PRPVTW 800
>sp|Q9VP47|TSR1_DROME Pre-rRNA-processing protein TSR1 homolog OS=Drosophila melanogaster
GN=CG7338 PE=1 SV=1
Length = 814
Score = 82.8 bits (203), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 26/243 (10%)
Query: 317 ELEGFRTGTYLRMEIHDVP------FEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRH 370
E EG G Y+ + + +VP F+ + D ++V G+ E + M V L+R
Sbjct: 551 EFEGVLPGLYVTLYVINVPESRWNAFKSAQLMDN---IIVYGMLPHEHQMCVMNVVLQRM 607
Query: 371 RWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAP 430
+ LKS++ +I+ G+RRF P+Y+ +H+ +Y + ATF+ P+
Sbjct: 608 PD-SEVPLKSKEQLIIQCGYRRFVVNPIYSQHTNGDKHKFERYFRPYETVCATFYAPIQF 666
Query: 431 PQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFT 490
P V+A + N ++ + A +L N + + K++ L G+P +I +K+A I+ MF
Sbjct: 667 PPAPVLAFK--VNPDSTLALVARGRLLSCNPDRIVLKRVVLSGHPMRINRKSASIRYMFF 724
Query: 491 SDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDI 550
+V + ++RT G G + KE +G G +C F+ ++ D
Sbjct: 725 YKEDVEYFKPVKLRTKCGRLGHI----KESLGTH----------GHMKCYFDGQLRSYDT 770
Query: 551 VFM 553
FM
Sbjct: 771 AFM 773
>sp|Q2NL82|TSR1_HUMAN Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1
PE=1 SV=1
Length = 804
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 95/190 (50%), Gaps = 16/190 (8%)
Query: 378 LKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVA 437
+K+++ +I G+RRF+ P+++ + +H++ ++ M +AT + P+ P V+
Sbjct: 608 VKAKEELIFHCGFRRFRASPLFSQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLL 667
Query: 438 VQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQ 497
+ SN S + AT ++ + + + K++ L G+P KIF K A+++ MF + +V
Sbjct: 668 FKQKSNGMHS--LIATGHLMSVDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLW 725
Query: 498 CEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWA 557
+ E+RT G RG + KE +G G +C+F+ ++ D V M +
Sbjct: 726 FKPVELRTKWGRRGHI----KEPLGTH----------GHMKCSFDGKLKSQDTVLMNLYK 771
Query: 558 DVEIPRFYNP 567
V Y+P
Sbjct: 772 RVFPKWTYDP 781
>sp|Q5R434|TSR1_PONAB Pre-rRNA-processing protein TSR1 homolog OS=Pongo abelii GN=TSR1
PE=2 SV=1
Length = 805
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 121/248 (48%), Gaps = 17/248 (6%)
Query: 320 GFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLK 379
G G Y+ + + +VP +VE F P++ + EQ + + + ++R + + +K
Sbjct: 552 GAEVGCYVTLHVSEVPVSVVECFRQGTPLIAFSLLPHEQKMSVLNMVVRRDPG-NTEPVK 610
Query: 380 SRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQ 439
+++ +I G+RRF+ P+++ + +H++ ++ M +AT + P+ P V+ +
Sbjct: 611 AKEELIFHCGFRRFRASPLFSQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFK 670
Query: 440 NLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCE 499
SN S + AT ++ + + + K++ L G+P K+F K A+++ MF + +V +
Sbjct: 671 QKSNGMHS--LIATGHLMSVDPDRMVIKRVVLSGHPLKMFTKMAVVRYMFFNREDVLWFK 728
Query: 500 GKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADV 559
E+RT G RG + KE +G G +C+F ++ D V M + V
Sbjct: 729 PVELRTKWGRRGHI----KEPLGTH----------GHMKCSFNGKLKSQDTVLMNLYKRV 774
Query: 560 EIPRFYNP 567
Y+P
Sbjct: 775 FPKWTYDP 782
>sp|O13956|TSR1_SCHPO Ribosome biogenesis protein tsr1 homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC23H4.15 PE=3 SV=1
Length = 783
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 109/237 (45%), Gaps = 22/237 (9%)
Query: 322 RTGTYLRMEIHDVPFEMVEYFD-PCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKS 380
+ G + +E+ +VP E+ EY++ P + +++ + E + Q +H + + + +S
Sbjct: 543 KPGKAVYVELRNVPIEIFEYYNKPWNLLVLYSLLQYENKLTVSQFTAMQHSEYEEPI-ES 601
Query: 381 RDPIIVSIGWRRFQTIPVYAIEDRSGRHRML----KYTPEHMHCLATFWGPLAPPQTGVV 436
++ +++ IG RRF P+Y+ SG L +Y P +A+ P+ ++
Sbjct: 602 KEELLLQIGPRRFMVRPLYSDPTASGASNNLQKYHRYLPPKQAVIASVISPIVFGNVPII 661
Query: 437 AVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVA 496
+ S+N S R+AAT + + I K+ L G+P K+ KK I+ MF + +V
Sbjct: 662 MFKKSSDN--SLRLAATGSYVNCDTNSVIAKRAVLTGHPFKVHKKLVTIRYMFFNPEDVI 719
Query: 497 QCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFM 553
+ ++ T G G + KE +G G + TF +I + D V M
Sbjct: 720 WFKPIQLFTKQGRTGYI----KEPLGTH----------GYFKATFNGKITVQDTVAM 762
>sp|Q54YA7|TSR1_DICDI Pre-rRNA-processing protein TSR1 homolog OS=Dictyostelium
discoideum GN=tsr1 PE=3 SV=1
Length = 826
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 105/239 (43%), Gaps = 24/239 (10%)
Query: 326 YLRMEIHDVPFEMVEYFDPC---HPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRD 382
Y+R+ + + P ++VE P + G+ E + + +++H+ + + V +S++
Sbjct: 592 YVRIHLVNGPKQLVERNTTAITTKPEVAVGLYRYENKISLLHFSVEKHKSYEETV-RSKE 650
Query: 383 PIIVSIGWRRFQTIPVYAIED-RSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNL 441
+ GWR+F T P+Y+I + + K+ + +AT +GP+ P ++ +
Sbjct: 651 EVYFHFGWRKFSTSPIYSISSPNCDKQKFEKFLLPARNTMATIYGPITYPPAPLL----I 706
Query: 442 SNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCK-IFKKTALIKDMFTSDLEVAQCEG 500
N + + AT + N + I K+I L G K I KK +KDMF ++ +
Sbjct: 707 FNGKDCNELVATGYLSSVNPDRIICKRIILTGVIAKSISKKFVTVKDMFYYPEDINWFKK 766
Query: 501 KEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADV 559
E+ T G G + KE +G G +C F+ + D V M + V
Sbjct: 767 VELYTKMGRVGHI----KEPLGTH----------GRMKCQFDGTMNQQDTVCMNLYKRV 811
>sp|Q61WR2|TSR1_CAEBR Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis briggsae
GN=tag-151 PE=3 SV=1
Length = 788
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 104/231 (45%), Gaps = 18/231 (7%)
Query: 324 GTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDP 383
G + + I +VP ++E + +++ + EQ + + + LK+H +
Sbjct: 532 GVFASVYIENVPVSVMEAYKETKNLVLFQLLPHEQKMSILNMVLKKHPSCTVPIGSEDQK 591
Query: 384 IIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLA-PPQTGVVAVQNLS 442
I +G+R+F+ V + + ++ ++ P +AT + P+ P T + Q+
Sbjct: 592 FIFYVGFRQFEAHAVLSSNTPGDKFKLERFMPTEKTFVATVYAPITFNPATVLCFRQDDK 651
Query: 443 NNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKE 502
Q + AT VL+ N + + K+ L G+P KI ++ +++ MF + ++ + E
Sbjct: 652 GRQ---ELVATGSVLDTNPDRIVLKRTVLSGHPYKINRRAVVVRYMFFNREDIDWFKPVE 708
Query: 503 VRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFM 553
+ T SG RG +K+A +G G +C F+ ++ D V +
Sbjct: 709 LYTPSGRRGHIKEA----VGTH----------GHMKCRFDQQLNAQDSVML 745
>sp|Q19329|TSR1_CAEEL Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis elegans
GN=tag-151 PE=3 SV=1
Length = 785
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 113/253 (44%), Gaps = 19/253 (7%)
Query: 324 GTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRD- 382
G + + I +VP ++E + +++ + E + + + LK+H + ++
Sbjct: 528 GAFASVFIENVPVAVLEAYKDAKNLVLFQLLPHEHKMSVLNMVLKKHPSCTIPITSDQNQ 587
Query: 383 PIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLA-PPQTGVVAVQNL 441
I +G+R+F+ V++ + ++ ++ P +AT + P+ P T + Q+
Sbjct: 588 KFIFYVGFRQFEANAVFSSNTPGDKFKLERFMPTEKTFVATVYAPITFNPATVLCFRQDD 647
Query: 442 SNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGK 501
Q + AT +L+ N + + K+ L G+P KI ++ +++ MF + ++ +
Sbjct: 648 KGRQ---ELVATGSILDSNPDRIVLKRTVLAGHPYKINRRAVVVRYMFFNREDIEWFKPV 704
Query: 502 EVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEI 561
E+ T SG RG +K+A +G G +C F+ ++ D V + + V
Sbjct: 705 ELYTPSGRRGHIKEA----VGTH----------GNMKCRFDQQLNAQDSVMLNLYKRVFP 750
Query: 562 PRFYNPLTTALQP 574
Y+ +L P
Sbjct: 751 VWNYSIFNRSLNP 763
>sp|Q07381|TSR1_YEAST Ribosome biogenesis protein TSR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TSR1 PE=1 SV=1
Length = 788
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 99/247 (40%), Gaps = 22/247 (8%)
Query: 323 TGTYLRMEIHDVPFEMVEYFDPCHPVL-VGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSR 381
G +RM I F + + DP + V G+ L E + L+R + K V S+
Sbjct: 553 AGDRIRMFIRFPKFLLEKIQDPKQLLFAVYGLLLHEHKNAVVNFSLQRWEQYDKPV-PSQ 611
Query: 382 DPIIVSIGWRRFQTIPVYAIEDRSGR--HRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQ 439
+PI+V G RR+ P+++ S H+ ++ +AT P+ Q+ + +
Sbjct: 612 EPIVVQYGVRRYTIQPLFSQGSNSPNNVHKYERFLHPDTVSVATCIAPVDFTQSPAIFFK 671
Query: 440 NLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCE 499
+ + + L +H + K+ L G+P + K ++ MF +V +
Sbjct: 672 PSPTDAKNIELIGHGTFLNADHSRILAKRAILTGHPFRFHKTVVTVRYMFFRPEDVEWFK 731
Query: 500 GKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFM----RG 555
+ T SG G + KE +G G + TF+ ++ D+V M R
Sbjct: 732 SIPLFTKSGRSGFI----KESLGTH----------GYFKATFDGKLSAQDVVAMSLYKRM 777
Query: 556 WADVEIP 562
W +P
Sbjct: 778 WPMPSLP 784
>sp|O31976|YOMI_BACSU SPBc2 prophage-derived uncharacterized transglycosylase YomI
OS=Bacillus subtilis (strain 168) GN=yomI PE=3 SV=2
Length = 2285
Score = 36.6 bits (83), Expect = 0.80, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 5/141 (3%)
Query: 57 EDENNHNVDNHLSSGTEEREDNDDMENELKLTKSSLRRCANLIQLVYGKSTSTSETLSKE 116
E E + L ++ +D + ELK + S+++ + I + ++ KE
Sbjct: 1963 ELEAHQKATQDLIDEIDKTDDEAKFQKELKERQDSIQKLTDQINQYSLDDSEFGKSKVKE 2022
Query: 117 VQDSIEGEESDEDEFFKPKVEGNKLREGLDSGIVNTDDCSKIKSYEDLKSWKQEEVYESI 176
+ + ++ E+ D D+F K + E NK +E L + D+ S Y++L + E ++ +
Sbjct: 2023 LTEQLQKEQLDLDDFLKDR-ESNKRKEALQDQL-EKDEESINNKYDNLVN--DERAFKKL 2078
Query: 177 RDRFVTGDWSK-AAQRNQVSK 196
D+ + G + A Q N+ SK
Sbjct: 2079 EDKIMNGKITDIAKQLNEFSK 2099
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 270,419,423
Number of Sequences: 539616
Number of extensions: 12057505
Number of successful extensions: 70017
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 794
Number of HSP's that attempted gapping in prelim test: 60028
Number of HSP's gapped (non-prelim): 7827
length of query: 727
length of database: 191,569,459
effective HSP length: 125
effective length of query: 602
effective length of database: 124,117,459
effective search space: 74718710318
effective search space used: 74718710318
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)