Query 004847
Match_columns 727
No_of_seqs 212 out of 507
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 13:54:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004847.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004847hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5192 BMS1 GTP-binding prote 100.0 2E-125 4E-130 1026.1 21.2 572 85-722 487-1076(1077)
2 PF04950 DUF663: Protein of un 100.0 1.4E-94 3E-99 752.1 7.5 289 241-559 9-297 (297)
3 KOG1980 Uncharacterized conser 100.0 5.5E-69 1.2E-73 591.1 20.9 230 322-568 522-751 (754)
4 COG5177 Uncharacterized conser 100.0 4.1E-53 8.9E-58 456.8 6.7 225 321-561 533-760 (769)
5 KOG1951 GTP-binding protein AA 99.5 4.4E-14 9.5E-19 130.4 9.5 102 618-719 1-104 (115)
6 KOG0461 Selenocysteine-specifi 94.9 0.03 6.6E-07 61.9 4.8 210 317-548 255-493 (522)
7 KOG1029 Endocytic adaptor prot 79.7 3.4 7.4E-05 50.0 6.2 30 687-716 372-401 (1118)
8 COG2451 Ribosomal protein L35A 49.4 79 0.0017 29.8 7.3 84 448-557 5-97 (100)
9 cd03706 mtEFTU_III Domain III 44.0 1.4E+02 0.0031 26.2 8.1 71 375-459 21-93 (93)
10 TIGR03680 eif2g_arch translati 41.8 3.9E+02 0.0085 30.0 12.8 64 375-456 341-405 (406)
11 PRK04000 translation initiatio 39.9 5E+02 0.011 29.3 13.3 114 318-456 284-410 (411)
12 PRK10512 selenocysteinyl-tRNA- 34.3 3.5E+02 0.0076 32.4 11.5 114 318-463 228-344 (614)
13 PRK00247 putative inner membra 33.0 2.5E+02 0.0054 32.6 9.6 44 650-695 315-358 (429)
14 COG1866 PckA Phosphoenolpyruva 32.0 38 0.00082 39.5 3.0 103 353-476 147-256 (529)
15 KOG4364 Chromatin assembly fac 32.0 2.6E+02 0.0057 34.3 9.8 22 611-632 221-242 (811)
16 PF01247 Ribosomal_L35Ae: Ribo 31.2 73 0.0016 29.8 4.2 54 479-546 18-84 (95)
17 PRK12317 elongation factor 1-a 30.7 6E+02 0.013 28.5 12.1 133 317-462 278-423 (425)
18 cd03708 GTPBP_III Domain III o 28.9 2.6E+02 0.0056 24.1 7.1 68 375-458 16-86 (87)
19 KOG1832 HIV-1 Vpr-binding prot 25.4 70 0.0015 40.2 3.8 18 203-220 1421-1438(1516)
20 TIGR00483 EF-1_alpha translati 25.3 8.2E+02 0.018 27.5 12.0 128 318-460 281-423 (426)
21 PRK04337 50S ribosomal protein 23.8 1.2E+02 0.0026 28.1 4.1 53 480-546 19-76 (87)
22 CHL00071 tufA elongation facto 23.6 1.1E+03 0.023 26.6 13.2 127 319-459 277-407 (409)
23 PTZ00041 60S ribosomal protein 22.5 1.4E+02 0.0029 29.2 4.4 84 447-556 17-116 (120)
24 PLN03126 Elongation factor Tu; 21.1 9.5E+02 0.021 28.0 11.6 75 376-459 400-476 (478)
25 PF00970 FAD_binding_6: Oxidor 20.0 4.1E+02 0.0089 23.0 6.7 64 319-393 28-97 (99)
No 1
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-125 Score=1026.13 Aligned_cols=572 Identities=32% Similarity=0.563 Sum_probs=498.3
Q ss_pred HHhhhcccc-ccCchhhhccCCCCCchhhccccc-cC-CC--CC--CCCCCCCCccccccCcccccCC-C-CCCCCCccc
Q 004847 85 LKLTKSSLR-RCANLIQLVYGKSTSTSETLSKEV-QD-SI--EG--EESDEDEFFKPKVEGNKLREGL-D-SGIVNTDDC 155 (727)
Q Consensus 85 ~~~~~~~~~-r~~nL~kLvYg~~~~~~~~~~~~~-e~-~~--e~--~~~~~~~fFk~~~~~~~~~e~~-~-~~~~~~~d~ 155 (727)
+++|.|++. |..|+.+++|+++++|++|+..|+ ++ .+ ++ .++++++||++++..+.+ .. + ....+ -..
T Consensus 487 ~kl~~sqs~kr~~ni~ki~y~e~lspeeci~e~kge~~~s~e~~~v~~D~~edff~vsk~~n~~--~s~~~ek~~~-~~f 563 (1077)
T COG5192 487 SKLAYSQSGKRGRNIQKIFYDESLSPEECIEEYKGESAKSSESDLVVQDEPEDFFDVSKVANES--ISSNHEKLME-SEF 563 (1077)
T ss_pred hhhhhhhcccccccccceeccccCCHHHHHHHhccccccccccccccccCchhhhhhhhhcccc--cccchhhhch-hHH
Confidence 456666654 567999999999999999999998 31 11 12 346777899976544432 10 0 11111 012
Q ss_pred ccccccccccCCCchHhHHHHhhhcccCccchhhhhccccCCCCCCCCCcccccCCCcccccCccccCCCCCCC-CC---
Q 004847 156 SKIKSYEDLKSWKQEEVYESIRDRFVTGDWSKAAQRNQVSKGKSEDDDSDDAVYGDYEDLETGEKQEGQRKDNS-GC--- 231 (727)
Q Consensus 156 ~~~~~~~~~~~W~~ee~~~sir~~FvTg~w~~~~~~d~~~~~~~~~~~~d~e~~GDFEDLEtge~~~~~~~~~~-~~--- 231 (727)
+.+ ...|+ .++.|+.||.++...+.. ++ .++.. .|++.|+|||||..|.....+-+++ +.
T Consensus 564 e~L-----~kkw~---s~~~lk~RF~~~~~lds~-eg------~EEl~-qd~E~gn~ed~~d~e~~~d~e~ees~G~s~t 627 (1077)
T COG5192 564 EEL-----KKKWS---SLAQLKSRFQKDATLDSI-EG------EEELI-QDDEKGNFEDLEDEENSSDNEMEESRGSSVT 627 (1077)
T ss_pred HHH-----HHHHh---hHHHHHHHhhcccccccc-cc------hhhhh-hchhccCcccccccccccccchhhccCCccc
Confidence 233 57895 489999999998765321 22 11111 3445789999998776543221111 10
Q ss_pred --CC--CCccc-hHHHHHHHHHHHHHhhhhhcccCCCCCcchhhccccccccCCCCCCccchHHHHHHHHHHHHHhhHHH
Q 004847 232 --EG--IENED-ESAVEERRLKKLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAE 306 (727)
Q Consensus 232 --~~--~e~~~-e~~~~k~~~kK~~lk~~F~~eyd~~~~~~~~~~~~~~~~~~~~e~~~~~~yd~~K~e~~~q~~~N~~e 306 (727)
++ .++-+ +.+++.+++||++|+.+|+.+..+ +++..+.+||+.+|+.+++|+.||+.|
T Consensus 628 ~~~~e~~~e~~~e~ErE~na~kKE~lr~~Fe~eer~-----------------d~e~~d~dwy~~eK~ki~~ql~inr~e 690 (1077)
T COG5192 628 AENEESADEVDYETEREENARKKEELRGNFELEERG-----------------DPEKKDVDWYTEEKRKIEEQLKINRSE 690 (1077)
T ss_pred ccchhhccccchHHHhhhhhhhhhhhhcceeehhcc-----------------CccccccchHHHHHHHHHHHHhhhhhh
Confidence 11 11123 778999999999999999987753 233455679999999999999999999
Q ss_pred hcCCCHhHHHHhcCCCCCcEEEEEEeecChhhhhccCCCCceeEeeeccccceeeEEEEEEEecCcccccccccCCcEEE
Q 004847 307 LNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIV 386 (727)
Q Consensus 307 f~~~d~~~R~~~eG~~~G~YVrI~I~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvvq~rikRhrw~~~kiLKSkDpLif 386 (727)
|++|++++|+.++||++|+||||+|+.||.+||++|+|.+|||+|||||.|.++|+||++|+|||| |++|||++|||||
T Consensus 691 ~e~M~Pe~r~~Ieg~raG~YVriv~~~vP~efv~~fn~r~piV~GGlLp~E~~~giVq~rikrhrW-hKKILKTNdPlif 769 (1077)
T COG5192 691 FETMVPESRVVIEGYRAGRYVRIVLSHVPLEFVDEFNSRYPIVLGGLLPAEKEMGIVQGRIKRHRW-HKKILKTNDPLIF 769 (1077)
T ss_pred hhhcCCcceeEeecccccceEEEEeccCCHHHHhhcCCCCcEEeccccchhhhhhhhhhHHHHhHH-HHHHhccCCCeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred EeeeeeeeeeeeeeeccCCccceeeeecCCCceEEEEEEeecCCCCccEEEEEecCCCCCCeEEEEEEEEecccCCeeEE
Q 004847 387 SIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIK 466 (727)
Q Consensus 387 siGwRRFqt~PIyS~~d~n~R~R~lKYtpehm~c~ATfyGPit~p~tgvlafq~~s~~~~~frI~ATG~Vl~~D~~~~Iv 466 (727)
|+|||||||+||||+.|+.+|+|||||||+||||.+|||||+++||||||++|+. ..+|||+|+|+|.++|.+..||
T Consensus 770 S~GWRRFQsiPvys~~DsrTRnRMlKYTPEhmhCn~sFYGP~v~pntgFc~Vqse---~g~frv~a~g~i~dv~~~~~lv 846 (1077)
T COG5192 770 SVGWRRFQSIPVYSMKDSRTRNRMLKYTPEHMHCNVSFYGPVVPPNTGFCAVQSE---KGDFRVLALGTITDVNGDAKLV 846 (1077)
T ss_pred EechhhhcccceeeecchhhhhhhhhcCccceeeeeeeecCccCCCCCceeEEec---CCceEEEEeeeeEeccccHHHH
Confidence 9999999999999999999999999999999999999999999999999999984 4569999999999999999999
Q ss_pred EeEEEeeeeeEEeecceEEeccCCChhhhccccCCeeEeccCccceeeccchhcccCCCCCCCCCCCceeEEeeeccccc
Q 004847 467 KKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRIL 546 (727)
Q Consensus 467 KKikLtG~P~KI~K~TAfIk~MF~s~lEV~kFkga~LrTksGiRG~IKkaL~~~~g~~~~~~~~~GthG~FRatFedkIl 546 (727)
|||||+|||++|++||||||+||+|.+||++|+||+|+||||+||+||.|+ |.+|++||.|+++|+
T Consensus 847 kklklvg~p~qi~qnt~fvrdmfts~lev~kfega~lk~vsglrgqvk~~~--------------~k~g~yra~fe~kml 912 (1077)
T COG5192 847 KKLKLVGYPKQIVQNTVFVRDMFTSDLEVLKFEGASLKAVSGLRGQVKGPH--------------GKNGEYRAVFEGKML 912 (1077)
T ss_pred hhhhhccCcHHHhhhhHhHHHhhhhhhHHHhhcccceeeeccccccccCcc--------------CCCccchheeccchh
Confidence 999999999999999999999999999999999999999999999999999 579999999999999
Q ss_pred ccCEEEEecccccccCcccccccccCCCCCCcccccccHHHHHHHcCCCCCCCCCCCCccccCCCCCCCCCCCChhhHhc
Q 004847 547 MSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAA 626 (727)
Q Consensus 547 ~sDiVfLrlw~rV~p~~fynpvt~~l~~~~~~W~gmrt~gelR~e~~i~~p~~~dS~Yk~ieR~~r~fnpl~iPk~Lq~~ 626 (727)
|||||.||+|+||.+++||+||+|||+ .|+|+|.++|||...|+..|.++||.|..++|..++||.+.+|+.+|+.
T Consensus 913 msdii~lr~~~pv~v~r~~~pv~~ll~----~wrglr~~~eir~sl~l~~~~~p~~~~~~~e~~~~~~~~~~~pr~ie~~ 988 (1077)
T COG5192 913 MSDIITLRCFVPVEVHRIFIPVDNLLG----KWRGLRRLHEIRESLGLTHSYAPQNDSSSEEMGYGAEEDYSLPREIESK 988 (1077)
T ss_pred hhheeeEEeeeeeEEEEeeccHHHHHH----HHhhhHHHHHHHHHhCCCCCCCCCccchhhhhhccccccccCcHhHHhh
Confidence 999999999999999999999999997 6999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004847 627 LPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREE 706 (727)
Q Consensus 627 LPf~skpK~~~~~~~~~~~~~~avv~~p~Ekk~~~l~q~l~ti~~~k~~krk~k~~~~~~~~~k~~~k~e~~~~~~~ke~ 706 (727)
|||+ +++.+++.||+++.-|.|++....+|..-++.+-|..+++++++-.++++.++.+|.|+++.+|.|+.
T Consensus 989 lp~~--------kr~~~~~srr~~~~~~~e~r~k~~ik~~i~~~r~kd~~~ke~~~s~~r~k~~~i~k~e~er~qr~r~~ 1060 (1077)
T COG5192 989 LPLD--------KRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKT 1060 (1077)
T ss_pred CCcc--------hhhhhheeeeeeccCChhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9998 55678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 004847 707 RRERYREQDKLMKKIR 722 (727)
Q Consensus 707 ~K~~~r~~gk~~~~~~ 722 (727)
+++.|...||++-++.
T Consensus 1061 ~~d~~~e~~kkr~kk~ 1076 (1077)
T COG5192 1061 IHDNYKEMAKKRLKKK 1076 (1077)
T ss_pred HHHHHHHHHhhhhhcc
Confidence 9999999999976554
No 2
>PF04950 DUF663: Protein of unknown function (DUF663); InterPro: IPR007034 This domain is found at the C terminus of the ribosome biogenesis protein BMS1 and TSR1 families, which may act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus.; PDB: 1WB1_D 1WB3_B 1WB2_A.
Probab=100.00 E-value=1.4e-94 Score=752.13 Aligned_cols=289 Identities=44% Similarity=0.698 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhhhhhcccCCCCCcchhhccccccccCCCCCCccchHHHHHHHHHHHHHhhHHHhcCCCHhHHHHhcC
Q 004847 241 AVEERRLKKLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEG 320 (727)
Q Consensus 241 ~~~k~~~kK~~lk~~F~~eyd~~~~~~~~~~~~~~~~~~~~e~~~~~~yd~~K~e~~~q~~~N~~ef~~~d~~~R~~~eG 320 (727)
...++.+|++.||..+++++|..+. +.+...+...+|+....+..++..+|.. .+|++++.+.+|
T Consensus 9 ~ar~Rf~KyRgLKs~r~s~wD~~E~------------~~~lP~~y~ri~~f~n~~~~k~~~~~~~---~~~~~~~~~~~g 73 (297)
T PF04950_consen 9 PARERFQKYRGLKSFRTSEWDPDEK------------DPNLPEDYSRIFQFENFKRTKKRALKEA---ELDEEEREQEEG 73 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc------------cccccccccccccccccccccccccccc---cccccccccccc
Confidence 4466788999999999999996532 1112234567888888888888888887 899999999999
Q ss_pred CCCCcEEEEEEeecChhhhhccCCCCceeEeeeccccceeeEEEEEEEecCcccccccccCCcEEEEeeeeeeeeeeeee
Q 004847 321 FRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYA 400 (727)
Q Consensus 321 ~~~G~YVrI~I~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvvq~rikRhrw~~~kiLKSkDpLifsiGwRRFqt~PIyS 400 (727)
+.||+||+|+|++||++++++|++++||||||||+||+++||||++|+||+| |++||||+||||||||||||||+||||
T Consensus 74 ~~~G~YVrI~i~~vP~~~~~~~~~~~Plil~gLl~~E~k~svv~~~ikrh~~-~~~~lkSkd~li~~~G~Rrf~~~Pifs 152 (297)
T PF04950_consen 74 VRPGTYVRIEISNVPCEFVENFDPSYPLILGGLLPHEQKMSVVNFRIKRHRW-YEKPLKSKDPLIFSCGWRRFQTIPIFS 152 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred eccCCccceeeeecCCCceEEEEEEeecCCCCccEEEEEecCCCCCCeEEEEEEEEecccCCeeEEEeEEEeeeeeEEee
Q 004847 401 IEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFK 480 (727)
Q Consensus 401 ~~d~n~R~R~lKYtpehm~c~ATfyGPit~p~tgvlafq~~s~~~~~frI~ATG~Vl~~D~~~~IvKKikLtG~P~KI~K 480 (727)
++++|+||||+||+|+||||+||||||++|||||||+|++.++...+|||+|||+|+++|++++|+|||+|+||||||||
T Consensus 153 ~~~~~~r~k~~k~~~~~~~~~at~ygPi~~~~~~vl~f~~~~~~~~~~~l~atG~v~~~d~~~~i~Kki~L~G~P~ki~k 232 (297)
T PF04950_consen 153 QEDNNNRHKYEKYLPEGMHCVATFYGPITFPPTPVLAFKESSNSGSSFRLVATGSVLNVDPDRIIVKKIKLTGYPFKIHK 232 (297)
T ss_dssp -------------------------------------------TTTSS-B-EEEEEEEE--GGGS-B--EEEEEEEEEES
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccCCCceEEEeeeEeCCCCcchhheeeeecCchheEEC
Confidence 99999999999999999999999999999999999999997666668999999999999999999999999999999999
Q ss_pred cceEEeccCCChhhhccccCCeeEeccCccceeeccchhcccCCCCCCCCCCCceeEEeeecccccccCEEEEeccccc
Q 004847 481 KTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADV 559 (727)
Q Consensus 481 ~TAfIk~MF~s~lEV~kFkga~LrTksGiRG~IKkaL~~~~g~~~~~~~~~GthG~FRatFedkIl~sDiVfLrlw~rV 559 (727)
||||||+||||++||+||+||+|+|+||+|||||+|| ||||+|||+|+++|++||||||+||+||
T Consensus 233 ~~a~vr~MF~~~~dv~~F~~~~l~T~~G~rG~Ik~~l--------------gt~G~fka~F~~~i~~~D~V~~~lykrV 297 (297)
T PF04950_consen 233 RTAVVRGMFFNPEDVAWFKGAELRTKSGIRGHIKESL--------------GTHGYFKATFEDKIKQSDIVFMRLYKRV 297 (297)
T ss_dssp SSCEECSSSSTCCHHHHS-S--BEETTS-BEEEEE-B--------------TTTTBBEEEESS---SS-EEEEE-----
T ss_pred ceEEhhhhcCCHHHHHhhcCCEEEeeccCCCEECeeE--------------CCCCcEEEEECCcCCCCCEEEEecCCCC
Confidence 9999999999999999999999999999999999999 7999999999999999999999999997
No 3
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.5e-69 Score=591.09 Aligned_cols=230 Identities=25% Similarity=0.390 Sum_probs=224.3
Q ss_pred CCCcEEEEEEeecChhhhhccCCCCceeEeeeccccceeeEEEEEEEecCcccccccccCCcEEEEeeeeeeeeeeeeee
Q 004847 322 RTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAI 401 (727)
Q Consensus 322 ~~G~YVrI~I~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvvq~rikRhrw~~~kiLKSkDpLifsiGwRRFqt~PIyS~ 401 (727)
.||+||||+|.|||..+++.|.+..+|||+||||||++|+|+||.++||+. |..||||+++|||+||+|||.++|+||+
T Consensus 522 ~~G~~V~v~l~nvP~~i~E~~~~~~~lvvfglL~hEhKmtV~Nfvl~r~p~-~e~Plkske~livq~G~Rrf~i~PlfSs 600 (754)
T KOG1980|consen 522 IPGQYVRVFLRNVPVSILEAIKKQLLLVVFGLLPHEHKMTVLNFVLQRHPG-YEEPLKSKEELIVQCGFRRFDINPLFSS 600 (754)
T ss_pred CCCceEEEEeecCcHHHHHHHhhccceeeeeccchhhhheeeEEEEecCCC-CCccccccceeEEEeccceEEecccccc
Confidence 599999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred ccCCccceeeeecCCCceEEEEEEeecCCCCccEEEEEecCCCCCCeEEEEEEEEecccCCeeEEEeEEEeeeeeEEeec
Q 004847 402 EDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKK 481 (727)
Q Consensus 402 ~d~n~R~R~lKYtpehm~c~ATfyGPit~p~tgvlafq~~s~~~~~frI~ATG~Vl~~D~~~~IvKKikLtG~P~KI~K~ 481 (727)
++.|++|||.||+|+.+..+|||||||+|||+|||+|+..+++ ..+++|||++++|||+|+|+||.+|+||||||||+
T Consensus 601 ~t~ndkhK~eRfl~~~~a~vaTviaPI~F~ps~vL~FK~s~~~--~~~LiAtG~~l~~dpdRiv~KRaVLsGhPfKi~kk 678 (754)
T KOG1980|consen 601 HTPNDKHKYERFLPPDEAVVATVIAPITFGPSPVLIFKKSSDG--SLELIATGSLLNCDPDRIVAKRAVLSGHPFKIHKK 678 (754)
T ss_pred CCccchhhhhhhcCccceEEEEEEeccccCCcceEEEEeCCCc--ccceeeeeeeeccCCcceeEeeeeecCCCceeeee
Confidence 9999999999999999999999999999999999999987654 67999999999999999999999999999999999
Q ss_pred ceEEeccCCChhhhccccCCeeEeccCccceeeccchhcccCCCCCCCCCCCceeEEeeecccccccCEEEEeccccccc
Q 004847 482 TALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEI 561 (727)
Q Consensus 482 TAfIk~MF~s~lEV~kFkga~LrTksGiRG~IKkaL~~~~g~~~~~~~~~GthG~FRatFedkIl~sDiVfLrlw~rV~p 561 (727)
.|+|||||||++||.||+|++|+|++|++||||+|| ||||+|||+|+++|+.+|+|+|+||+||||
T Consensus 679 ~v~VRYMFFn~EDV~wFKpIqL~Tk~gR~GhIKEpl--------------GTHG~fKc~FdgkLksqDtV~MsLYKRvfP 744 (754)
T KOG1980|consen 679 YVVVRYMFFNREDVEWFKPIQLYTKSGRTGHIKEPL--------------GTHGYFKCYFDGKLKSQDTVMMSLYKRVFP 744 (754)
T ss_pred eEEEeeecCCHhHeeeecceeeeccccccccccccc--------------cCcceeEEEecCcccccchHHHHHHHhhcc
Confidence 999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred Ccccccc
Q 004847 562 PRFYNPL 568 (727)
Q Consensus 562 ~~fynpv 568 (727)
.|-|++.
T Consensus 745 ~~~y~~~ 751 (754)
T KOG1980|consen 745 KWTYWNG 751 (754)
T ss_pred ccccccc
Confidence 9999553
No 4
>COG5177 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.1e-53 Score=456.85 Aligned_cols=225 Identities=22% Similarity=0.268 Sum_probs=214.4
Q ss_pred CCCCcEEEEEEeecChhhhhccC-CCCceeEeeeccccceeeEEEEEEEecCcccccccccCCcEEEEeeeeeeeeeeee
Q 004847 321 FRTGTYLRMEIHDVPFEMVEYFD-PCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVY 399 (727)
Q Consensus 321 ~~~G~YVrI~I~~VP~e~ve~fd-p~~PlIvgGLl~~E~k~gvvq~rikRhrw~~~kiLKSkDpLifsiGwRRFqt~PIy 399 (727)
.++|..|||.|. +|..+++.+. |..-|+|+|||.||++.+|.||++.||.. |+.||+|+++|++++|.|||.++|+|
T Consensus 533 a~~G~~vri~lr-~p~~l~E~~~~p~~llvvygll~yE~k~tV~nFs~~rh~e-ye~P~~s~E~~vvq~G~rr~~i~Pl~ 610 (769)
T COG5177 533 APDGQMVRIKLR-FPKFLYEGLIEPQILLVVYGLLEYEDKKTVHNFSLQRHFE-YEVPLKSEESMVVQLGHRRVDICPLI 610 (769)
T ss_pred CCCCcEEEEEEe-ccHHHHhhhcccceeeeeeehhhhcchhhhhhhhhhhhhc-ccCCCCcccceeeeeccceEEEeehh
Confidence 689999999999 9999999874 66677789999999999999999999999 99999999999999999999999999
Q ss_pred eecc--CCccceeeeecCCCceEEEEEEeecCCCCccEEEEEecCCCCCCeEEEEEEEEecccCCeeEEEeEEEeeeeeE
Q 004847 400 AIED--RSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCK 477 (727)
Q Consensus 400 S~~d--~n~R~R~lKYtpehm~c~ATfyGPit~p~tgvlafq~~s~~~~~frI~ATG~Vl~~D~~~~IvKKikLtG~P~K 477 (727)
|... .|+-|||.||+|+....+|||+|||.|+++|+|+|+..+....+.+++|||+.+++|++++|.||.+|||||||
T Consensus 611 s~~s~s~Nn~qKy~r~l~p~~~~vas~I~Pi~Fg~spvi~fkkS~~d~~s~~l~a~g~~~n~d~~rviakrAvLtGhPFk 690 (769)
T COG5177 611 SKGSNSPNNNQKYFRRLKPLESGVASFIGPISFGLSPVIIFKKSALDELSATLLASGGMNNFDGDRVIAKRAVLTGHPFK 690 (769)
T ss_pred ccCCCCCcchHHHHhhcCccceeeeEEEcceeccCcceEEEccCccchhhhhhhhcccccccCcchhhhhhhhhcCCCcc
Confidence 9943 36789999999999999999999999999999999987655568899999999999999999999999999999
Q ss_pred EeecceEEeccCCChhhhccccCCeeEeccCccceeeccchhcccCCCCCCCCCCCceeEEeeecccccccCEEEEeccc
Q 004847 478 IFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWA 557 (727)
Q Consensus 478 I~K~TAfIk~MF~s~lEV~kFkga~LrTksGiRG~IKkaL~~~~g~~~~~~~~~GthG~FRatFedkIl~sDiVfLrlw~ 557 (727)
+||+.++||||||||+||.||++++|+|++|+.|.||+|| ||||+|||||+++|..+|+|.|.||+
T Consensus 691 ~hK~~vtvryMFf~pEdV~wFk~Iqlftk~grtGfIKepl--------------GThGyFKatF~gki~~qD~VaMSLYK 756 (769)
T COG5177 691 NHKRYVTVRYMFFSPEDVMWFKNIQLFTKRGRTGFIKEPL--------------GTHGYFKATFSGKIKSQDKVAMSLYK 756 (769)
T ss_pred cceeEEEEeeecCCHhHeeeecchhhhhhcCccceecccc--------------cCcceeeEEecCcccccchhhHHHHH
Confidence 9999999999999999999999999999999999999999 79999999999999999999999999
Q ss_pred cccc
Q 004847 558 DVEI 561 (727)
Q Consensus 558 rV~p 561 (727)
|++|
T Consensus 757 Rm~p 760 (769)
T COG5177 757 RMFP 760 (769)
T ss_pred Hhcc
Confidence 9984
No 5
>KOG1951 consensus GTP-binding protein AARP2 involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=4.4e-14 Score=130.40 Aligned_cols=102 Identities=39% Similarity=0.596 Sum_probs=97.2
Q ss_pred CCChhhHhcCCCCCCCCCCCCCCCcccccccc--ccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004847 618 VIPKSLQAALPFESKPKDIPGRKRPLLENRRA--VVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKD 695 (727)
Q Consensus 618 ~iPk~Lq~~LPf~skpK~~~~~~~~~~~~~~a--vv~~p~Ekk~~~l~q~l~ti~~~k~~krk~k~~~~~~~~~k~~~k~ 695 (727)
.||++||++|||+|+||.+++++++++.-.|| ||+.|+|+|++++++++.|+++++..++++.+..++++++++.++.
T Consensus 1 ~iPKalqk~LPfkskpka~~~~k~~l~~~~r~~~vv~~p~e~K~~~~~~~v~t~~~~~~qk~K~~~~~krk~~~e~k~~~ 80 (115)
T KOG1951|consen 1 MIPKALQKALPFKSKPKAAKKRKRPLQDLQRADEVVAKPRERKARAVIDAVETARSFKRQKAKKTKKKKRKEYREKKAKK 80 (115)
T ss_pred CccHHHHHhCCccccchhhccccccccchhhcchhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999988887 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004847 696 EQLTRKRQREERRERYREQDKLMK 719 (727)
Q Consensus 696 e~~~~~~~ke~~K~~~r~~gk~~~ 719 (727)
++....+.++.++..|+..|+.-.
T Consensus 81 ~~~~~~r~~~kkr~~~kk~~k~~~ 104 (115)
T KOG1951|consen 81 EEPLEQREKEKKREGPKKVGKSTL 104 (115)
T ss_pred hhhhhhhHHHHHHhhhcccchhHH
Confidence 999999999999999999887654
No 6
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=94.93 E-value=0.03 Score=61.87 Aligned_cols=210 Identities=15% Similarity=0.212 Sum_probs=134.6
Q ss_pred HhcCCCCCcEEEEEEeecChhhhhccCCCCceeEeeeccccceeeEEEEEEEecCcccccccccCCcEEEEeeeeeeeee
Q 004847 317 ELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTI 396 (727)
Q Consensus 317 ~~eG~~~G~YVrI~I~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvvq~rikRhrw~~~kiLKSkDpLifsiGwRRFqt~ 396 (727)
.+..+..|..+-+.+..+...++++---+. .|.| ...-.+-+.++.-++ |.++|+|+.-+-+++|+----..
T Consensus 255 ~vtsa~~GdR~g~cVtqFd~klleRgi~~~---pg~L----k~~~avl~~vepI~y-fr~~i~sk~K~Hi~VgheTVMa~ 326 (522)
T KOG0461|consen 255 RVTSAAAGDRAGFCVTQFDEKLLERGICGP---PGTL----KSTKAVLATVEPIQY-FRKSINSKSKIHIAVGHETVMAE 326 (522)
T ss_pred hhhhhhcccceeeeeeccCHHHHhccccCC---Cccc----ceeeeeeEeecchHH-HhhhhhhcceEEEEehhhhhhhh
Confidence 344566677777776665555554411011 1222 223345567788888 99999999999999998654443
Q ss_pred eeeeeccCC---------ccceee-eecCC-CceE-----EEEEEeecCCCCccEEEEEecCC--CCCCeEEEEEEEEec
Q 004847 397 PVYAIEDRS---------GRHRML-KYTPE-HMHC-----LATFWGPLAPPQTGVVAVQNLSN--NQASFRIAATAVVLE 458 (727)
Q Consensus 397 PIyS~~d~n---------~R~R~l-KYtpe-hm~c-----~ATfyGPit~p~tgvlafq~~s~--~~~~frI~ATG~Vl~ 458 (727)
-.|..+..+ ...-++ -.+|. -.+| +.+|=-|+..|+..-++-..... -..+-|++.+|.+.-
T Consensus 327 ~~ff~d~d~~~~tf~~~kEye~~E~d~~Pa~~~~~~~~~aL~~FEkpv~~P~~s~~i~s~ld~d~h~~~CRlAF~Gi~~~ 406 (522)
T KOG0461|consen 327 CQFFKDTDGTTSTFQLDKEYENGEFDMLPALLAPCDVIQALFSFEKPVFLPEYSNPIMSALDEDQHGSGCRLAFSGIFSQ 406 (522)
T ss_pred eEEeeccCCcccccccchhhhccccccChhhcCCchheeeeeeecccccCcccccHHHHhhhhhcCCCceEEEeeeehhh
Confidence 333332111 011122 12332 2345 66788898888732222211111 245789999999876
Q ss_pred ccCC----------eeEEEeEEEeeeeeEEeec-ceEEeccCCChhhhccccCCeeEeccCccceeeccchhcccCCCCC
Q 004847 459 FNHE----------VKIKKKIKLVGYPCKIFKK-TALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKR 527 (727)
Q Consensus 459 ~D~~----------~~IvKKikLtG~P~KI~K~-TAfIk~MF~s~lEV~kFkga~LrTksGiRG~IKkaL~~~~g~~~~~ 527 (727)
.-|+ ..|.||=-=.|+--++.+. .+.+++||--.--..-|.|-++.+.+|-||.|-.+.
T Consensus 407 ~l~~~~y~~~~LP~lrifkrK~k~G~veRv~~d~svI~~~lFK~etn~dlfvG~~v~lStGe~G~Ie~aF---------- 476 (522)
T KOG0461|consen 407 ILPESKYNGKNLPPLRIFKRKCKKGHVERVEKDFSVICTGLFKAETNFDLFVGFQVCLSTGERGKIEGAF---------- 476 (522)
T ss_pred hCcccccccccCCchhhhhhhhcccchhhhhccHHHHHhhhhccccccceeeeeEEEeccCCccceeccc----------
Confidence 5555 3445554555666665554 356799999888888899999999999999999999
Q ss_pred CCCCCCceeEEeeeccccccc
Q 004847 528 KGGQPREGIARCTFEDRILMS 548 (727)
Q Consensus 528 ~~~~GthG~FRatFedkIl~s 548 (727)
|..|.||.||-++|...
T Consensus 477 ----GqsgKf~itf~~~lspe 493 (522)
T KOG0461|consen 477 ----GQSGKFRITFAEKLSPE 493 (522)
T ss_pred ----cCcceEEEEecccCChh
Confidence 68999999999998653
No 7
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.75 E-value=3.4 Score=49.95 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004847 687 EIEAERAKDEQLTRKRQREERRERYREQDK 716 (727)
Q Consensus 687 ~~~k~~~k~e~~~~~~~ke~~K~~~r~~gk 716 (727)
+..++.+++-+...+|+.|+||++-|++..
T Consensus 372 ElekqLerQReiE~qrEEerkkeie~rEaa 401 (1118)
T KOG1029|consen 372 ELEKQLERQREIERQREEERKKEIERREAA 401 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555556666677777666553
No 8
>COG2451 Ribosomal protein L35AE/L33A [Translation, ribosomal structure and biogenesis]
Probab=49.37 E-value=79 Score=29.80 Aligned_cols=84 Identities=26% Similarity=0.349 Sum_probs=57.3
Q ss_pred eEEEEEEEEecccCCeeEEEeEEEeeeeeEEeecceEEecc-CCChhhhccccCCeeEec--c-C--ccceeeccchhcc
Q 004847 448 FRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDM-FTSDLEVAQCEGKEVRTV--S-G--IRGQVKKAAKEEI 521 (727)
Q Consensus 448 frI~ATG~Vl~~D~~~~IvKKikLtG~P~KI~K~TAfIk~M-F~s~lEV~kFkga~LrTk--s-G--iRG~IKkaL~~~~ 521 (727)
-|..+-|++++.--+.. + .|-+++.||-- -.|++|...|.|-.+-=+ + | +.|.|...-
T Consensus 5 ~r~~ikgv~lsyrR~k~-------~-----q~P~~~liKi~gv~s~~eA~~y~gk~v~yk~~~~G~Vi~G~V~R~H---- 68 (100)
T COG2451 5 HRLRIKGVVLSYRRSKR-------T-----QHPNVSLIKIEGVDSPEEAQFYLGKRVCYKYRSSGRVIKGKVVRTH---- 68 (100)
T ss_pred ceEEEeeEEEEEEeccc-------c-----cCCceEEEEEecCCCHHHHHhhhccEEEEEeCCCCcEEEEEEEEec----
Confidence 35566666665433322 1 34467778777 889999999977655433 3 5 377777776
Q ss_pred cCCCCCCCCCCCceeEEeeeccccc---ccCEEEEeccc
Q 004847 522 GNQPKRKGGQPREGIARCTFEDRIL---MSDIVFMRGWA 557 (727)
Q Consensus 522 g~~~~~~~~~GthG~FRatFedkIl---~sDiVfLrlw~ 557 (727)
|..|..||.|+..+- ..+.|++.+|.
T Consensus 69 ----------GnsGaVrarF~~~LP~qa~G~~v~v~ly~ 97 (100)
T COG2451 69 ----------GNSGAVRARFERNLPGQALGTSVEVKLYP 97 (100)
T ss_pred ----------CCcceEEEEecCCCCchhcCcEEEEEEcc
Confidence 689999999998874 45677777653
No 9
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=43.98 E-value=1.4e+02 Score=26.24 Aligned_cols=71 Identities=11% Similarity=-0.049 Sum_probs=45.3
Q ss_pred ccccccCCcEEEEeeeeeeeeeeeeeeccCCccceeeeecCCCceEEEEEE--eecCCCCccEEEEEecCCCCCCeEEEE
Q 004847 375 KKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFW--GPLAPPQTGVVAVQNLSNNQASFRIAA 452 (727)
Q Consensus 375 ~kiLKSkDpLifsiGwRRFqt~PIyS~~d~n~R~R~lKYtpehm~c~ATfy--GPit~p~tgvlafq~~s~~~~~frI~A 452 (727)
+.+|++...+.|++|-..-...-. .. ++ -.+.+++..|.|.+. -|+..-+.+-++++..+ +.+|
T Consensus 21 ~~~i~~g~~~~~~~~t~~~~~~i~-~~---~~----~~~l~~g~~~~v~i~l~~p~~~~~g~rf~lR~~~------~tvg 86 (93)
T cd03706 21 HKPFVSNFQPQMFSLTWDCAARID-LP---PG----KEMVMPGEDTKVTLILRRPMVLEKGQRFTLRDGN------RTIG 86 (93)
T ss_pred CccccCCCeeEEEeccceEEEEEE-CC---CC----CcEeCCCCEEEEEEEECCcEEEeeCCEEEEEECC------EEEE
Confidence 368999999999988765222111 11 11 234567888888888 88854444555555431 7999
Q ss_pred EEEEecc
Q 004847 453 TAVVLEF 459 (727)
Q Consensus 453 TG~Vl~~ 459 (727)
.|.|+++
T Consensus 87 ~G~V~~~ 93 (93)
T cd03706 87 TGLVTDT 93 (93)
T ss_pred EEEEEeC
Confidence 9998763
No 10
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=41.77 E-value=3.9e+02 Score=29.97 Aligned_cols=64 Identities=8% Similarity=0.164 Sum_probs=45.4
Q ss_pred ccccccCCcEEEEeeeeeeeeeeeeeeccCCccceeeeecCCCceEEEEEEeecC-CCCccEEEEEecCCCCCCeEEEEE
Q 004847 375 KKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLA-PPQTGVVAVQNLSNNQASFRIAAT 453 (727)
Q Consensus 375 ~kiLKSkDpLifsiGwRRFqt~PIyS~~d~n~R~R~lKYtpehm~c~ATfyGPit-~p~tgvlafq~~s~~~~~frI~AT 453 (727)
+.+|+....+++++|-.+=...-.. .. + ..|...+.-|++ .++..|+.++.. ...+||+++
T Consensus 341 ~~~i~~g~~~~l~~gt~~~~~~v~~-~~--~------------~~~~l~l~~p~~~~~g~r~~~~~~~---~~~~~~~g~ 402 (406)
T TIGR03680 341 VEPIKTGEVLMLNVGTATTVGVVTS-AR--K------------DEIEVKLKRPVCAEEGDRVAISRRV---GGRWRLIGY 402 (406)
T ss_pred cccCCCCCEEEEEEccceEEEEEEE-cC--C------------cEEEEEECCcEEcCCCCEEEEEEec---CCceEEEEE
Confidence 5799999999999997755444332 21 1 235566788864 457788887765 357999999
Q ss_pred EEE
Q 004847 454 AVV 456 (727)
Q Consensus 454 G~V 456 (727)
|.+
T Consensus 403 g~~ 405 (406)
T TIGR03680 403 GII 405 (406)
T ss_pred EEe
Confidence 986
No 11
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=39.88 E-value=5e+02 Score=29.31 Aligned_cols=114 Identities=12% Similarity=0.125 Sum_probs=66.2
Q ss_pred hcCCCCCcEEEEEEe---ecChhhhhc----cCCCCceeEeeeccccceeeEEEEEEEec-Cc----ccccccccCCcEE
Q 004847 318 LEGFRTGTYLRMEIH---DVPFEMVEY----FDPCHPVLVGGIGLGEQNVGYMQVRLKRH-RW----WHKKVLKSRDPII 385 (727)
Q Consensus 318 ~eG~~~G~YVrI~I~---~VP~e~ve~----fdp~~PlIvgGLl~~E~k~gvvq~rikRh-rw----~~~kiLKSkDpLi 385 (727)
++.+.||..|.|.|. ++...-+.. -+|..|..++ .-=-+++.+-.| .| +++.+|+..-.++
T Consensus 284 ~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~~~~~-------~~f~a~v~~l~~~~~~~~~~~~~~i~~g~~~~ 356 (411)
T PRK04000 284 VEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTLPPVW-------ESLTIEVHLLERVVGTKEELKVEPIKTGEPLM 356 (411)
T ss_pred CCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCCCCce-------EEEEEEEEEEEhhcCccccccCCCCCCCCEEE
Confidence 445789999999885 443332221 0111211111 111234444444 23 1357899999999
Q ss_pred EEeeeeeeeeeeeeeeccCCccceeeeecCCCceEEEEEEeec-CCCCccEEEEEecCCCCCCeEEEEEEEE
Q 004847 386 VSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPL-APPQTGVVAVQNLSNNQASFRIAATAVV 456 (727)
Q Consensus 386 fsiGwRRFqt~PIyS~~d~n~R~R~lKYtpehm~c~ATfyGPi-t~p~tgvlafq~~s~~~~~frI~ATG~V 456 (727)
+++|-.+-.+.-.. .. +..|...++-|+ .+++..|+..+.. ....||+++|.+
T Consensus 357 l~~~t~~~~~~i~~-i~--------------~~~~~~~l~~p~~~~~g~r~~~~~~~---~~~~~~~~~~~~ 410 (411)
T PRK04000 357 LNVGTATTVGVVTS-AR--------------KDEAEVKLKRPVCAEEGDRVAISRRV---GGRWRLIGYGII 410 (411)
T ss_pred EEEeccEEEEEEEE-cC--------------CcEEEEEECCcEecCCCCEEEEEEec---CCcEEEEEEEEe
Confidence 99998765443332 21 125667788997 4556777775543 346799999975
No 12
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=34.31 E-value=3.5e+02 Score=32.44 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=66.5
Q ss_pred hcCCCCCcEEEEEEee-cChhhhhccCCCCceeEee-eccccceeeEEEEEEEecCcccccccccCCcEEEEeeeeeeee
Q 004847 318 LEGFRTGTYLRMEIHD-VPFEMVEYFDPCHPVLVGG-IGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQT 395 (727)
Q Consensus 318 ~eG~~~G~YVrI~I~~-VP~e~ve~fdp~~PlIvgG-Ll~~E~k~gvvq~rikRhrw~~~kiLKSkDpLifsiGwRRFqt 395 (727)
++-..||+.|-|.|.+ +..+-+.. +.-|+--+ +.+.. .+-+.+. ...+|+...++.|++|-.+-..
T Consensus 228 v~~a~aG~rval~l~g~~~~~~i~r---Gdvl~~~~~~~~~~----~~~~~l~-----~~~~l~~~~~~~~~~gt~~~~~ 295 (614)
T PRK10512 228 TEQAQAGQRIALNIAGDAEKEQINR---GDWLLADAPPEPFT----RVIVELQ-----THTPLTQWQPLHIHHAASHVTG 295 (614)
T ss_pred CCEEeCCCeEEEEecCCCChhhCCC---cCEEeCCCCCccce----eEEEEEc-----CCccCCCCCEEEEEEcccEEEE
Confidence 3447899999999986 76654432 22111111 11111 1223332 3478999999999999765443
Q ss_pred eeeeeeccCCccceeeeecCCCceEEEEEEeecCCC-CccEEEEEecCCCCCCeEEEEEEEEecccCCe
Q 004847 396 IPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPP-QTGVVAVQNLSNNQASFRIAATAVVLEFNHEV 463 (727)
Q Consensus 396 ~PIyS~~d~n~R~R~lKYtpehm~c~ATfyGPit~p-~tgvlafq~~s~~~~~frI~ATG~Vl~~D~~~ 463 (727)
.-.+- +...|...+.-|+... +..|+. +..| +-+.+|.|.|++++|..
T Consensus 296 ~i~~l---------------~~~~~~l~l~~p~~~~~gdr~il-r~~s----~~~tigGg~Vld~~~~~ 344 (614)
T PRK10512 296 RVSLL---------------EDNLAELVLDTPLWLADNDRLVL-RDIS----ARNTLAGARVVMLNPPR 344 (614)
T ss_pred EEEEc---------------CCeEEEEEECCcccccCCCEEEE-EeCC----CCEEEEEEEEcccCCcc
Confidence 32221 2234445556887544 556655 5543 35889999999987754
No 13
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=33.05 E-value=2.5e+02 Score=32.60 Aligned_cols=44 Identities=14% Similarity=0.307 Sum_probs=24.0
Q ss_pred ccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004847 650 VVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKD 695 (727)
Q Consensus 650 vv~~p~Ekk~~~l~q~l~ti~~~k~~krk~k~~~~~~~~~k~~~k~ 695 (727)
.+..|. ++.++-.....+++++.+..++++..++....++.+.+
T Consensus 315 ~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~ 358 (429)
T PRK00247 315 MIITPW--RAPELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAE 358 (429)
T ss_pred ccCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455 66677666666666666555555544444444433333
No 14
>COG1866 PckA Phosphoenolpyruvate carboxykinase (ATP) [Energy production and conversion]
Probab=32.03 E-value=38 Score=39.49 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=62.9
Q ss_pred eccccceeeEEEEEEEecCcccccccccCCcEEEEeeeeeeeeee-eeeeccCCccceeeeecCC-----CceEEEEEEe
Q 004847 353 IGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIP-VYAIEDRSGRHRMLKYTPE-----HMHCLATFWG 426 (727)
Q Consensus 353 Ll~~E~k~gvvq~rikRhrw~~~kiLKSkDpLifsiGwRRFqt~P-IyS~~d~n~R~R~lKYtpe-----hm~c~ATfyG 426 (727)
|-.++..+++|++---+--| ...=+.|..-++|.+-=+---+-- -|.-+-.-++-.++-|.-+ .|||.|.+ |
T Consensus 147 l~~~~~dftvin~p~f~~~~-~~~g~~Se~~i~~n~~~~~~lIggT~YaGEMKK~~fs~mnylLP~~~i~~MHcsANv-G 224 (529)
T COG1866 147 LSTFKPDFTVINAPSFKADP-KRDGLRSETFVAFNFTERIVLIGGTWYAGEMKKGIFSVMNYLLPLKGILSMHCSANV-G 224 (529)
T ss_pred hccCCCCeEEEeCCcCCCCh-hhcccccccEEEEecccceeeeeccchhhhhhhhHHHHhhccccccccccceecccc-C
Confidence 45567788899877666777 777788877777764322111111 1222222355678888744 48999965 5
Q ss_pred ecCCCCccEEEEEecCCCCCCeEEEEEEE-EecccCCeeEEEeEEEeeeee
Q 004847 427 PLAPPQTGVVAVQNLSNNQASFRIAATAV-VLEFNHEVKIKKKIKLVGYPC 476 (727)
Q Consensus 427 Pit~p~tgvlafq~~s~~~~~frI~ATG~-Vl~~D~~~~IvKKikLtG~P~ 476 (727)
|. +-..|.| -+++||. .|+.||.| +|+|---
T Consensus 225 ~~---gdvalFF----------GLSGTGKTTLSaDp~R------~LIGDDE 256 (529)
T COG1866 225 EK---GDVALFF----------GLSGTGKTTLSADPHR------RLIGDDE 256 (529)
T ss_pred cC---CCeEEEE----------eccCCCcceeccCCcc------ccccCcc
Confidence 44 3344444 5788885 47999998 4666443
No 15
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=31.98 E-value=2.6e+02 Score=34.26 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=13.4
Q ss_pred CCCCCCCCCChhhHhcCCCCCC
Q 004847 611 PRKFNPLVIPKSLQAALPFESK 632 (727)
Q Consensus 611 ~r~fnpl~iPk~Lq~~LPf~sk 632 (727)
.+.|.+-.-|+.=-..+||.++
T Consensus 221 ~~~~s~q~p~k~~s~~~pk~tk 242 (811)
T KOG4364|consen 221 IRSFSDQMPQKNSSEMAPKDTK 242 (811)
T ss_pred cCcccccccccCCCcCCCCCCC
Confidence 3456665556655666777664
No 16
>PF01247 Ribosomal_L35Ae: Ribosomal protein L35Ae; InterPro: IPR001780 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal L35A eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of: Vertebrate L35A. Caenorhabditis elegans L35A (F10E7.7). Saccharomyces cerevisiae L37A/L37B (Rp47). Plant L35A. Pyrococcus woesei L35A homologue []. These proteins have 87 to 110 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_j 2LP6_A 1SQR_A 4A18_H 4A1D_H 4A19_H 4A1B_H 3IZS_j.
Probab=31.23 E-value=73 Score=29.80 Aligned_cols=54 Identities=26% Similarity=0.339 Sum_probs=35.8
Q ss_pred eecceEEecc-CCChhhhccccCCeeEecc------------CccceeeccchhcccCCCCCCCCCCCceeEEeeecccc
Q 004847 479 FKKTALIKDM-FTSDLEVAQCEGKEVRTVS------------GIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRI 545 (727)
Q Consensus 479 ~K~TAfIk~M-F~s~lEV~kFkga~LrTks------------GiRG~IKkaL~~~~g~~~~~~~~~GthG~FRatFedkI 545 (727)
+-+||.||== .++.+|..+|.|-.+-=++ =|-|.|..+- |..|.+||.|...|
T Consensus 18 ~~~~aLlKiegV~~~~~a~fylGKrv~yvyk~~~~~~~~k~r~iwGkV~r~H--------------GnsGvVrAkF~~nL 83 (95)
T PF01247_consen 18 HPNTALLKIEGVNTKEDAQFYLGKRVAYVYKAKNKKNGSKGRVIWGKVTRPH--------------GNSGVVRAKFKKNL 83 (95)
T ss_dssp CEEEEEEEESS-STCHHHHTTTT-EEEEEECE-SSSTTECSEEEEEEEEEES--------------TTTTEEEEEESS--
T ss_pred CCCeeEEeecCccCHHHHHhhcCcEEEEEEecccccCCCcEeEEEEEEEeEE--------------cCCCEEEEEeCCCC
Confidence 3456666643 6788888888776654332 2478999887 68999999998766
Q ss_pred c
Q 004847 546 L 546 (727)
Q Consensus 546 l 546 (727)
-
T Consensus 84 P 84 (95)
T PF01247_consen 84 P 84 (95)
T ss_dssp S
T ss_pred C
Confidence 3
No 17
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=30.75 E-value=6e+02 Score=28.47 Aligned_cols=133 Identities=11% Similarity=0.067 Sum_probs=66.8
Q ss_pred HhcCCCCCcEEEEEEeecChhhhhccCCCCceeEeeeccccceeeEEEEEEEecCcccccccccCCcEEEEeeeeeeee-
Q 004847 317 ELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQT- 395 (727)
Q Consensus 317 ~~eG~~~G~YVrI~I~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvvq~rikRhrw~~~kiLKSkDpLifsiGwRRFqt- 395 (727)
.++-+.+|..|.|.|.++...-+. ....|.-.+-.+...+-=..++.+-. ++.+|+.....++++|-.+-.+
T Consensus 278 ~~~~a~aG~~v~i~l~~~~~~~i~---rG~vl~~~~~~~~~~~~f~a~v~~l~----~~~~i~~G~~~~~~~~t~~~~~~ 350 (425)
T PRK12317 278 ELPQAEPGDNIGFNVRGVGKKDIK---RGDVCGHPDNPPTVAEEFTAQIVVLQ----HPSAITVGYTPVFHAHTAQVACT 350 (425)
T ss_pred ccCEECCCCeEEEEECCCCHHHcc---CccEecCCCCCCCcccEEEEEEEEEC----CCCcCCCCCeEEEEEcCcEEEEE
Confidence 344578899999999987654332 22211111111111112223444443 3468888899999999665443
Q ss_pred -eeeeeeccCCccc---eeeeecCCCceEEEEEE--eecC------CCCccEEEEEecCCCCCCeEEEEEEEEecccCC
Q 004847 396 -IPVYAIEDRSGRH---RMLKYTPEHMHCLATFW--GPLA------PPQTGVVAVQNLSNNQASFRIAATAVVLEFNHE 462 (727)
Q Consensus 396 -~PIyS~~d~n~R~---R~lKYtpehm~c~ATfy--GPit------~p~tgvlafq~~s~~~~~frI~ATG~Vl~~D~~ 462 (727)
..|.+.-|.++-. +--++.+.+..+++.|- -|++ ++..+=++++.. -+.+|.|.|+++.+.
T Consensus 351 i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~p~~~~~~~~~~~lgrfilr~~------g~tv~~G~i~~v~~~ 423 (425)
T PRK12317 351 FEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTKPLVIEKVKEIPQLGRFAIRDM------GQTIAAGMVIDVKPA 423 (425)
T ss_pred EEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCeeEEEeCCcCCCCccEEEEEC------CCeEEEEEEEEeccC
Confidence 3344443322111 11124445555555442 3332 122233333331 157999999888754
No 18
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=28.91 E-value=2.6e+02 Score=24.11 Aligned_cols=68 Identities=15% Similarity=0.065 Sum_probs=38.8
Q ss_pred ccccccCCcEEEEeeeeeeeeeeeeeeccCCccceeeeecCCCceEEEEEE---eecCCCCccEEEEEecCCCCCCeEEE
Q 004847 375 KKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFW---GPLAPPQTGVVAVQNLSNNQASFRIA 451 (727)
Q Consensus 375 ~kiLKSkDpLifsiGwRRFqt~PIyS~~d~n~R~R~lKYtpehm~c~ATfy---GPit~p~tgvlafq~~s~~~~~frI~ 451 (727)
+.+|.+.-..++++|-.+-...-. .... ++...+..+.+.+. -|+..-+.+-+++++ + +.+
T Consensus 16 ~~~i~~Gy~~~l~~~t~~~~~~i~----~i~~-----~~l~~g~~~~v~i~f~~~p~~~e~~grf~lr~------g-~tv 79 (87)
T cd03708 16 PTTISPGYQATVHIGSIRQTARIV----SIDK-----DVLRTGDRALVRFRFLYHPEYLREGQRLIFRE------G-RTK 79 (87)
T ss_pred CCcccCCCEeEEEEcCCEEEEEEE----eccH-----hhccCCCeEEEEEEECCCCcEEccCCeEEEEC------C-CcE
Confidence 467888877777777665332111 1001 45566666666655 666423334455532 2 689
Q ss_pred EEEEEec
Q 004847 452 ATAVVLE 458 (727)
Q Consensus 452 ATG~Vl~ 458 (727)
|.|.|.+
T Consensus 80 a~G~I~~ 86 (87)
T cd03708 80 GVGEVTK 86 (87)
T ss_pred EEEEEEE
Confidence 9999865
No 19
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=25.36 E-value=70 Score=40.21 Aligned_cols=18 Identities=28% Similarity=0.291 Sum_probs=10.5
Q ss_pred CCcccccCCCcccccCcc
Q 004847 203 DSDDAVYGDYEDLETGEK 220 (727)
Q Consensus 203 ~~d~e~~GDFEDLEtge~ 220 (727)
++|+|.+||=.|++.|..
T Consensus 1421 ddd~edd~D~dd~~e~~~ 1438 (1516)
T KOG1832|consen 1421 DDDEEDDLDRDDGLEGDN 1438 (1516)
T ss_pred ccccccccccccchhccc
Confidence 345566666666666543
No 20
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=25.27 E-value=8.2e+02 Score=27.46 Aligned_cols=128 Identities=10% Similarity=0.125 Sum_probs=63.4
Q ss_pred hcCCCCCcEEEEEEeecChhhhhccCCCCceeEeee--ccccceeeEEEEEEEecCcccccccccCCcEEEEeeeeeeee
Q 004847 318 LEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGI--GLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQT 395 (727)
Q Consensus 318 ~eG~~~G~YVrI~I~~VP~e~ve~fdp~~PlIvgGL--l~~E~k~gvvq~rikRhrw~~~kiLKSkDpLifsiGwRRFqt 395 (727)
++.+.+|..|.|.|.+++..-+.. +. |++.- .+.-.+-=..++.+-. ++.+|+..-..+|+||..+-.+
T Consensus 281 ~~~a~aG~~v~i~l~~i~~~~i~r---G~--vl~~~~~~~~~~~~f~a~v~~l~----~~~~i~~g~~~~~~~~t~~~~~ 351 (426)
T TIGR00483 281 IEQAEPGDNIGFNVRGVSKKDIRR---GD--VCGHPDNPPKVAKEFTAQIVVLQ----HPGAITVGYTPVFHCHTAQIAC 351 (426)
T ss_pred cCEEcCCCEEEEEECCCChhhccc---ce--EEecCCCCCceeeEEEEEEEEEC----CCCccCCCCeEEEEecCcEEEE
Confidence 445789999999999887654432 11 11111 0000000112222222 3357777666669999887543
Q ss_pred --eeeeeeccCCccce---eeeecCCCceEEEEEE--eecCC------CCccEEEEEecCCCCCCeEEEEEEEEeccc
Q 004847 396 --IPVYAIEDRSGRHR---MLKYTPEHMHCLATFW--GPLAP------PQTGVVAVQNLSNNQASFRIAATAVVLEFN 460 (727)
Q Consensus 396 --~PIyS~~d~n~R~R---~lKYtpehm~c~ATfy--GPit~------p~tgvlafq~~s~~~~~frI~ATG~Vl~~D 460 (727)
..|.+.-+.++-.. --++...+..+.+.|- -|++. +..+=++++.. -+.+|.|.|+.+.
T Consensus 352 ~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e~~~~~~~~grf~lr~~------g~tv~~G~v~~~~ 423 (426)
T TIGR00483 352 RFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPMVIEAVKEIPPLGRFAIRDM------GQTVAAGMIIDVD 423 (426)
T ss_pred EEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCeeEEeecccCCCCccEEEEEC------CCEEEEEEEEEee
Confidence 45555544322111 1235555666566553 23211 11222223321 1578999888765
No 21
>PRK04337 50S ribosomal protein L35Ae; Validated
Probab=23.85 E-value=1.2e+02 Score=28.12 Aligned_cols=53 Identities=21% Similarity=0.328 Sum_probs=35.4
Q ss_pred ecceEEec-cCCChhhhccccCCeeE--eccC--ccceeeccchhcccCCCCCCCCCCCceeEEeeeccccc
Q 004847 480 KKTALIKD-MFTSDLEVAQCEGKEVR--TVSG--IRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRIL 546 (727)
Q Consensus 480 K~TAfIk~-MF~s~lEV~kFkga~Lr--TksG--iRG~IKkaL~~~~g~~~~~~~~~GthG~FRatFedkIl 546 (727)
-|||.||= -.++.+|..+|-|-.+- .+.| |.|.|..+- |..|.+||.|...+-
T Consensus 19 ~~~aLlkiegv~~~~~a~fylGKrv~yvyk~grviwGKItR~H--------------GnsGvVrAkF~~nLP 76 (87)
T PRK04337 19 NRQVIIKPLGVDDREEAAKLIGRKVIWKDPTGNKYVGKIVRVH--------------GNRGEVRARFKPGLP 76 (87)
T ss_pred CceEEEEEcCcCCHHHHHhhcCceEEEEeCCCCEEEEEEEeee--------------CCCceEEEEECCCCC
Confidence 34555553 25667777777654443 2233 479999887 688999999987653
No 22
>CHL00071 tufA elongation factor Tu
Probab=23.57 E-value=1.1e+03 Score=26.57 Aligned_cols=127 Identities=11% Similarity=-0.051 Sum_probs=64.9
Q ss_pred cCCCCCcEEEEEEeecChhhhhccCCCCceeEeeec-cccceeeEEEEEEEecCc-ccccccccCCcEEEEeeeeeeeee
Q 004847 319 EGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIG-LGEQNVGYMQVRLKRHRW-WHKKVLKSRDPIIVSIGWRRFQTI 396 (727)
Q Consensus 319 eG~~~G~YVrI~I~~VP~e~ve~fdp~~PlIvgGLl-~~E~k~gvvq~rikRhrw-~~~kiLKSkDpLifsiGwRRFqt~ 396 (727)
+-+.+|..|.|.|.++...-+. .+. |++.-- +.....=.+++.+-.|.- -...+|+.....+++||-.+-...
T Consensus 277 ~~a~aGd~v~i~l~~i~~~~i~---~G~--vl~~~~~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~~~ 351 (409)
T CHL00071 277 DEGLAGDNVGILLRGIQKEDIE---RGM--VLAKPGTITPHTKFEAQVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGK 351 (409)
T ss_pred CEECCCceeEEEEcCCCHHHcC---CeE--EEecCCCCCcceEEEEEEEEEecccCCccccccCCceEEEEEcccEEEEE
Confidence 4578999999999887654332 222 122110 101111123333333310 014678888889999998875543
Q ss_pred eeeeeccCCccceeeeecCCCceEEEEEE--eecCCCCccEEEEEecCCCCCCeEEEEEEEEecc
Q 004847 397 PVYAIEDRSGRHRMLKYTPEHMHCLATFW--GPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEF 459 (727)
Q Consensus 397 PIyS~~d~n~R~R~lKYtpehm~c~ATfy--GPit~p~tgvlafq~~s~~~~~frI~ATG~Vl~~ 459 (727)
-..-....+ .--++...+..|+|.|- .|++.-..+-++++.. -+.+|.|.|+++
T Consensus 352 i~~i~~~~~---~~~~~l~~g~~a~v~l~~~~pi~~e~~~rfilR~~------~~tig~G~V~~~ 407 (409)
T CHL00071 352 IESFTADDG---SKTEMVMPGDRIKMTVELIYPIAIEKGMRFAIREG------GRTVGAGVVSKI 407 (409)
T ss_pred EEEEcccCC---CCCcEecCCCEEEEEEEECCeEEEeeCCEEEEecC------CeEEEEEEEEEe
Confidence 332211111 11234556666666554 5554333333444321 278888888753
No 23
>PTZ00041 60S ribosomal protein L35a; Provisional
Probab=22.53 E-value=1.4e+02 Score=29.24 Aligned_cols=84 Identities=20% Similarity=0.296 Sum_probs=52.0
Q ss_pred CeEEEEEEEEecccCCeeEEEeEEEeeeeeEEeecceEEec-cCCChhhhccccCCeeEecc------------Ccccee
Q 004847 447 SFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKD-MFTSDLEVAQCEGKEVRTVS------------GIRGQV 513 (727)
Q Consensus 447 ~frI~ATG~Vl~~D~~~~IvKKikLtG~P~KI~K~TAfIk~-MF~s~lEV~kFkga~LrTks------------GiRG~I 513 (727)
.-|+-+-|++++.--+.. .-+-|||.||= -.++.+|..+|-|-.+-=++ =|-|.|
T Consensus 17 ~~Rly~kgv~lgYkRg~~------------nQ~~~~aLlKieGV~~~~~a~fYlGKrvayvyka~~~~~~~k~RviwGKV 84 (120)
T PTZ00041 17 PVRLYVKAVFLGYKRSKV------------NQYPNVALLKIEGVNTREDARFYLGKRVAYVYKAKKLKNGTKFRAIWGKI 84 (120)
T ss_pred CcceEEEEEEEEeccccc------------cCCCceEEEEecCcCChhhhHhhccceEEEEEcCccccCCcceeEEEEEE
Confidence 446666666655322221 23445666663 26677888888765553321 145899
Q ss_pred eccchhcccCCCCCCCCCCCceeEEeeeccccc---ccCEEEEecc
Q 004847 514 KKAAKEEIGNQPKRKGGQPREGIARCTFEDRIL---MSDIVFMRGW 556 (727)
Q Consensus 514 KkaL~~~~g~~~~~~~~~GthG~FRatFedkIl---~sDiVfLrlw 556 (727)
..+- |..|.+||.|...+- ++..|.+-||
T Consensus 85 tR~H--------------GnsGvVrAkF~~nLPp~A~G~~VrVmly 116 (120)
T PTZ00041 85 TRPH--------------GNSGVVRARFNKNLPPKAIGSRVRVFLY 116 (120)
T ss_pred Eccc--------------CCCcEEEEEeCCCCChHHcCCeEEEEEc
Confidence 9887 689999999998764 4556655544
No 24
>PLN03126 Elongation factor Tu; Provisional
Probab=21.05 E-value=9.5e+02 Score=28.05 Aligned_cols=75 Identities=9% Similarity=-0.056 Sum_probs=45.8
Q ss_pred cccccCCcEEEEeeeeeeeeeeeeeeccCCccceeeeecCCCceEEEEE--EeecCCCCccEEEEEecCCCCCCeEEEEE
Q 004847 376 KVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATF--WGPLAPPQTGVVAVQNLSNNQASFRIAAT 453 (727)
Q Consensus 376 kiLKSkDpLifsiGwRRFqt~PIyS~~d~n~R~R~lKYtpehm~c~ATf--yGPit~p~tgvlafq~~s~~~~~frI~AT 453 (727)
.+|+..-..++++|--+-...-..-..+.+.. -++...+..+.+.| -.|++..+.+-++++.. -+.+|-
T Consensus 400 ~~I~~G~~~~lhigt~~~~~~I~~i~~~~~~~---~~~l~~gd~a~v~l~~~~Pi~~~~~~RfilR~~------~~Tva~ 470 (478)
T PLN03126 400 SPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEE---SKMVMPGDRVKMVVELIVPVACEQGMRFAIREG------GKTVGA 470 (478)
T ss_pred ccccCCcEEEEEEEecEEEEEEEEEecccCCC---ccEeCCCCEEEEEEEECCeEEEccCCEEEEecC------CceEEE
Confidence 47888888899999776544322221111111 24566666666555 47877666666666553 268899
Q ss_pred EEEecc
Q 004847 454 AVVLEF 459 (727)
Q Consensus 454 G~Vl~~ 459 (727)
|.|+++
T Consensus 471 G~V~~v 476 (478)
T PLN03126 471 GVIQSI 476 (478)
T ss_pred EEEEEe
Confidence 988764
No 25
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=20.03 E-value=4.1e+02 Score=23.03 Aligned_cols=64 Identities=16% Similarity=0.298 Sum_probs=38.1
Q ss_pred cCCCCCcEEEEEEeecChhhhhccCCCCceeEeeeccccceeeEEEEEEEecC------cccccccccCCcEEEEeeeee
Q 004847 319 EGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHR------WWHKKVLKSRDPIIVSIGWRR 392 (727)
Q Consensus 319 eG~~~G~YVrI~I~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvvq~rikRhr------w~~~kiLKSkDpLifsiGwRR 392 (727)
-.+.||+||.|.+. ++-.. ..--+++......-+.+.+.||+++ | -.. |+..|.+-++--+=+
T Consensus 28 ~~~~pGQ~v~v~~~-~~~~~--------~~R~yS~~s~~~~~~~~~~~ik~~~~G~~S~~-L~~-l~~Gd~v~i~gP~G~ 96 (99)
T PF00970_consen 28 LDFKPGQFVSVRVP-INGKQ--------VSRPYSPASSPDDKGYLEFAIKRYPNGRVSRY-LHQ-LKPGDEVEIRGPYGN 96 (99)
T ss_dssp -SSTTT-EEEEEEE-ETTEE--------EEEEEEBCSSTTSSSEEEEEEEECTTSHHHHH-HHT-SCTTSEEEEEEEESS
T ss_pred cccCcceEEEEEEc-cCCcc--------eecceeEeeecCCCCcEEEEEEeccCCHHHHH-HHh-CCCCCEEEEEEcccc
Confidence 46899999999988 33221 1112233344456778999999883 3 323 777777766654444
Q ss_pred e
Q 004847 393 F 393 (727)
Q Consensus 393 F 393 (727)
|
T Consensus 97 f 97 (99)
T PF00970_consen 97 F 97 (99)
T ss_dssp E
T ss_pred c
Confidence 3
Done!