Query 004847
Match_columns 727
No_of_seqs 212 out of 507
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 07:39:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004847.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004847hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wb1_A Translation elongation 99.8 3.6E-20 1.2E-24 201.8 9.1 217 318-558 253-480 (482)
2 1sqr_A 50S ribosomal protein L 50.4 16 0.00054 32.8 4.3 53 480-546 19-76 (95)
3 3izq_1 HBS1P, elongation facto 45.1 70 0.0024 36.2 9.6 82 374-461 515-611 (611)
4 4a18_H RPL35A; ribosome, eukar 40.5 47 0.0016 30.7 5.9 65 478-556 30-109 (113)
5 3sjy_A Translation initiation 38.8 2.8E+02 0.0095 29.0 12.5 65 375-457 336-402 (403)
6 3mca_A HBS1, elongation factor 31.7 90 0.0031 35.1 7.7 75 375-459 508-591 (592)
7 3j21_c 50S ribosomal protein L 31.1 70 0.0024 28.3 5.3 54 479-546 18-76 (87)
8 3iz5_j 60S ribosomal protein L 26.7 68 0.0023 29.5 4.6 53 481-547 30-95 (111)
9 3p26_A Elongation factor 1 alp 26.3 3.9E+02 0.013 28.8 11.3 130 316-462 329-478 (483)
10 1s0u_A EIF-2-gamma, translatio 22.5 6.8E+02 0.023 26.1 12.6 65 376-457 343-407 (408)
11 1jny_A EF-1-alpha, elongation 21.3 7.4E+02 0.025 26.1 13.9 129 317-463 285-431 (435)
12 1f60_A Elongation factor EEF1A 20.0 8.2E+02 0.028 26.1 15.4 130 318-462 297-442 (458)
No 1
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.80 E-value=3.6e-20 Score=201.84 Aligned_cols=217 Identities=14% Similarity=0.130 Sum_probs=150.9
Q ss_pred hcCCCCCcEEEEEEeecChhhhhccCCCCceeEeeeccccceeeEEEEEEEecCcccccccccCCcEEEEeeeeeeeeee
Q 004847 318 LEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIP 397 (727)
Q Consensus 318 ~eG~~~G~YVrI~I~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvvq~rikRhrw~~~kiLKSkDpLifsiGwRRFqt~P 397 (727)
+..+.+|+.|.|.+.++..+.+.. ..-| ++.-.+. .-..-+.+++.--.. ++.+|++..++.|++|..+-.+..
T Consensus 253 v~~a~~G~~v~~~l~~~~~~~i~~---Gdvl-~~~~~~~-~~~~~~~a~v~~l~~-~~~~l~~g~~~~l~~~t~~~~~~v 326 (482)
T 1wb1_A 253 VMEAKAGDRVGMAIQGVDAKQIYR---GXIL-TSKDTKL-QTVDKIVAKIKISDI-FKYNLTPKMKVHLNVGMLIVPAVA 326 (482)
T ss_dssp BCCCCSSCCCCEECSSCCSSCCCS---SCBC-CCTTCCC-CCEEEEEECCCCCSS-CCSCCCSSCEEEEEETTEEEEEEE
T ss_pred eeEecCCCEEEEEecCCCHhhccc---cceE-ecCCCCC-ceeeEEEEEEEEecc-CCcccCCCCEEEEEEcccEEEEEE
Confidence 445678888888887764432211 1111 0100000 011122222221122 357999999999999999988765
Q ss_pred eeee---ccCCccceeeeecCCC--ceEEEEEEeecCCCCccEEEEEecCCCCCCeEEEEEEEEecccCCeeEEEeEEEe
Q 004847 398 VYAI---EDRSGRHRMLKYTPEH--MHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLV 472 (727)
Q Consensus 398 IyS~---~d~n~R~R~lKYtpeh--m~c~ATfyGPit~p~tgvlafq~~s~~~~~frI~ATG~Vl~~D~~~~IvKKikLt 472 (727)
..-. -|.++.+..-++...+ ..|...+-.|+++.+-+-++++...+.....|.+|.|.|+++.+ +++++|.
T Consensus 327 ~~~~~~~~d~~~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr~~~~~~~~~~tvg~G~v~~~~~----~~~l~v~ 402 (482)
T 1wb1_A 327 VPFKKVTFGKTEENIILNEVISGNEXYXAFELEEKVLAEVGDRVLITRLDLPPTTLRIXGHGLIEEFKP----IKDLNIK 402 (482)
T ss_dssp EEEEECCSSSCCCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEECTTSCTTSCCCCCBCCEEECCC----GGGSCCC
T ss_pred EEEeccccccccccccchhhcCCCEEEEEEEcCccEEecCCCeEEEEECCCCccCceEeeEEEEEeccc----chhceee
Confidence 4432 2333333333344333 46777788999887665556665221122468999999999877 5666665
Q ss_pred eeeeE-----EeecceEEeccCCChhhhccccCCeeEeccCc-cceeeccchhcccCCCCCCCCCCCceeEEeeeccccc
Q 004847 473 GYPCK-----IFKKTALIKDMFTSDLEVAQCEGKEVRTVSGI-RGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRIL 546 (727)
Q Consensus 473 G~P~K-----I~K~TAfIk~MF~s~lEV~kFkga~LrTksGi-RG~IKkaL~~~~g~~~~~~~~~GthG~FRatFedkIl 546 (727)
..+.| ++++||+|++||++..+|+||.|.+|+|++|. +|+|+.++ |++|+|||+|+++|.
T Consensus 403 k~~~k~g~v~~~~~~~i~~~lf~~~~~~~~f~g~~v~~~~g~~~G~I~~~f--------------g~~G~~~~~f~~~~~ 468 (482)
T 1wb1_A 403 KEVLREGKVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTF--------------GTKGLLTAEFSGNVE 468 (482)
T ss_dssp CCCEEEEEEECCSSCCEETTSCSSHHHHHHSCSCCCEETTTCCCBCCCCCB--------------TTTTBBCCCBSSCCC
T ss_pred ehhhccCcEEEcCCEEEEEcCccchhhhHHhcCcEEEEcCCceEEEEeccC--------------CCCceEEEEecCCCC
Confidence 55555 78899999999999999999999999999999 99999999 799999999999999
Q ss_pred ccCEEEEecccc
Q 004847 547 MSDIVFMRGWAD 558 (727)
Q Consensus 547 ~sDiVfLrlw~r 558 (727)
+||+|||++|+|
T Consensus 469 ~~d~v~~~~~~~ 480 (482)
T 1wb1_A 469 NRDKVILNRLRR 480 (482)
T ss_dssp SSCEEEEECCCS
T ss_pred CCCeeeeehhhc
Confidence 999999999986
No 2
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=50.35 E-value=16 Score=32.83 Aligned_cols=53 Identities=23% Similarity=0.316 Sum_probs=41.1
Q ss_pred ecceEEec-cCCChhhhccccCCeeEeccC----ccceeeccchhcccCCCCCCCCCCCceeEEeeeccccc
Q 004847 480 KKTALIKD-MFTSDLEVAQCEGKEVRTVSG----IRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRIL 546 (727)
Q Consensus 480 K~TAfIk~-MF~s~lEV~kFkga~LrTksG----iRG~IKkaL~~~~g~~~~~~~~~GthG~FRatFedkIl 546 (727)
-+||.||= --++.+|.++|-|-.+-=++- |-|.|..+- |..|.+||.|...+-
T Consensus 19 ~~~aLlkIegV~~k~~a~fYlGKrvayvyka~rviwGKVtR~H--------------GnsGvVrAkF~~nLP 76 (95)
T 1sqr_A 19 NNVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRVH--------------GTKGAVRARFEKGLP 76 (95)
T ss_dssp CCEEEEEESCCCCHHHHHHHTTCEEEECCSTTCCEEEEEEEES--------------SSSSCEEEECSSCCS
T ss_pred CceEEEEEcCCCCHHHHHhhcCCeEEEEECCCCEEEEEEEeee--------------CCCCEEEEEeCCCCC
Confidence 35566663 368899999998887765543 789999997 689999999987663
No 3
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=45.05 E-value=70 Score=36.16 Aligned_cols=82 Identities=13% Similarity=0.122 Sum_probs=50.4
Q ss_pred cccccccCCcEEEEeeeeeeeeee--eeeeccCCc-cc-eeeeecCCCceEEEEEEe-----ecCCCC------ccEEEE
Q 004847 374 HKKVLKSRDPIIVSIGWRRFQTIP--VYAIEDRSG-RH-RMLKYTPEHMHCLATFWG-----PLAPPQ------TGVVAV 438 (727)
Q Consensus 374 ~~kiLKSkDpLifsiGwRRFqt~P--IyS~~d~n~-R~-R~lKYtpehm~c~ATfyG-----Pit~p~------tgvlaf 438 (727)
++.+|....+++|+||-.+-.+.- |-+.-|.++ .. .--++...+..+++.|-- ||++-+ +|=+++
T Consensus 515 ~~~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~~~~~~~l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~l 594 (611)
T 3izq_1 515 MNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVL 594 (611)
T ss_dssp CSSCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBCTTCSCSSSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEE
T ss_pred CCCCCCCCCEEEEEECCeEeeEEeeeeeeeecccccccccCccccCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEE
Confidence 567999999999999998766532 223334332 21 112356667666666653 775443 344455
Q ss_pred EecCCCCCCeEEEEEEEEecccC
Q 004847 439 QNLSNNQASFRIAATAVVLEFNH 461 (727)
Q Consensus 439 q~~s~~~~~frI~ATG~Vl~~D~ 461 (727)
+.. -+.+|.|+|+.++.
T Consensus 595 r~~------~~Tva~G~i~~v~~ 611 (611)
T 3izq_1 595 RKD------GRTIAAGKISEITQ 611 (611)
T ss_dssp ESS------SSEEEEEEEEEECC
T ss_pred EeC------CCEEEEEEEEEecC
Confidence 432 16899999998763
No 4
>4a18_H RPL35A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_H 4a1b_H 4a1d_H
Probab=40.51 E-value=47 Score=30.67 Aligned_cols=65 Identities=25% Similarity=0.345 Sum_probs=47.6
Q ss_pred EeecceEEecc-CCChhhhccccCCeeE----ec--cC-----ccceeeccchhcccCCCCCCCCCCCceeEEeeecccc
Q 004847 478 IFKKTALIKDM-FTSDLEVAQCEGKEVR----TV--SG-----IRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRI 545 (727)
Q Consensus 478 I~K~TAfIk~M-F~s~lEV~kFkga~Lr----Tk--sG-----iRG~IKkaL~~~~g~~~~~~~~~GthG~FRatFedkI 545 (727)
-+-|||.||== =++.+|..+|.|-.+- ++ .| |-|.|..+- |..|.+||.|...|
T Consensus 30 Q~~~taLlKIeGV~~~~~a~fylGKrvayvykak~~~g~k~RviwGKVtR~H--------------GnsGvVrAkF~~nL 95 (113)
T 4a18_H 30 QNSNQALLKLQNVNTKEDVAFYQGKRVVYIYKGQKKNGSNYRTIWGRIGKAH--------------GNNGVAVARFAHNL 95 (113)
T ss_dssp EEEEEEEEEETTCCSHHHHHTTTTCEEEEEEEEEEETTEEEEEEEEEEEEEE--------------TTTTEEEEEESSCC
T ss_pred CCCCeEEEEEcCcCCHHHHHhhcCCeEEEEEecCCCCCCeEEEEEEEEEeee--------------CCCCeEEEEeCCCC
Confidence 45677777743 5788999999887543 22 34 249999998 68999999999887
Q ss_pred c---ccCEEEEecc
Q 004847 546 L---MSDIVFMRGW 556 (727)
Q Consensus 546 l---~sDiVfLrlw 556 (727)
- +++.|.+-||
T Consensus 96 P~kA~G~~VrVmLy 109 (113)
T 4a18_H 96 PPQAIGSVLRVMLY 109 (113)
T ss_dssp CGGGGGSEEEEECC
T ss_pred ChHHcCCeEEEEEe
Confidence 4 4556766655
No 5
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=38.83 E-value=2.8e+02 Score=29.04 Aligned_cols=65 Identities=12% Similarity=0.262 Sum_probs=44.8
Q ss_pred ccccccCCcEEEEeeeeeeeeeeeeeeccCCccceeeeecCCCceEEEEEEeecCC-CCc-cEEEEEecCCCCCCeEEEE
Q 004847 375 KKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAP-PQT-GVVAVQNLSNNQASFRIAA 452 (727)
Q Consensus 375 ~kiLKSkDpLifsiGwRRFqt~PIyS~~d~n~R~R~lKYtpehm~c~ATfyGPit~-p~t-gvlafq~~s~~~~~frI~A 452 (727)
..+|+...++.|++|-.+-...-. +... + .+-..+--|++. .+. .|+..+.. ...+||+|
T Consensus 336 ~~~l~~~~~~~~~~gt~~~~~~v~-~~~~--~------------~~~~~l~~p~~~~~g~~r~~i~r~~---~~~~r~~g 397 (403)
T 3sjy_A 336 VDPIRAKETLMLSVGSSTTLGIVT-SVKK--D------------EIEVELRRPVAVWSNNIRTVISRQI---AGRWRMIG 397 (403)
T ss_dssp CCCCCTTCEEEEEETTEEEEEEEE-EECS--S------------EEEEEEEEEEECCSSSCEEEEEEEE---TTEEEEEE
T ss_pred CCCCCCCCEEEEEECccEEEEEEE-EecC--c------------eEEEEeCCcEeeccCCEEEEEEEEe---CCcEEEEE
Confidence 679999999999999886655443 2211 1 344555577644 456 78887765 34789999
Q ss_pred EEEEe
Q 004847 453 TAVVL 457 (727)
Q Consensus 453 TG~Vl 457 (727)
.|.|.
T Consensus 398 ~g~i~ 402 (403)
T 3sjy_A 398 WGLVE 402 (403)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99874
No 6
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=31.67 E-value=90 Score=35.08 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=45.4
Q ss_pred ccccccCCcEEEEeeeeeeeeeeeeeeccCCccceeeeecCCCceEEEEEE---eecCC------CCccEEEEEecCCCC
Q 004847 375 KKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFW---GPLAP------PQTGVVAVQNLSNNQ 445 (727)
Q Consensus 375 ~kiLKSkDpLifsiGwRRFqt~PIyS~~d~n~R~R~lKYtpehm~c~ATfy---GPit~------p~tgvlafq~~s~~~ 445 (727)
..+|....+++|+||-.+-.+.- .....+. +--++...+..|.+.|- .|+++ +..+-++++..
T Consensus 508 ~~pi~~g~~~~l~~~t~~~~~~i--~l~~~~~--~~~~~l~~gd~~~v~l~fl~~p~~~e~~~~~~~~~rfilr~~---- 579 (592)
T 3mca_A 508 HGPILSGSTLVLHLGRTVTSVSL--KIVTVNN--KRSRHIASRKRALVRISFLDGLFPLCLAEECPALGRFILRRS---- 579 (592)
T ss_dssp SSCEETTEEEEEECSSCEEEEEE--EEEESSS--SCCSEECSSCEEEEEEEESSSCEEECCTTTCHHHHEEEEESS----
T ss_pred CccCCCCCEEEEEEcCcEEEEEE--EEEeccc--cchhccCCCCEEEEEEEECCCcEEEEeccCCCCCCeEEEEEC----
Confidence 46888888899999977654433 2211111 11134556767776665 67766 55555666532
Q ss_pred CCeEEEEEEEEecc
Q 004847 446 ASFRIAATAVVLEF 459 (727)
Q Consensus 446 ~~frI~ATG~Vl~~ 459 (727)
-+.+|.|+|..+
T Consensus 580 --~~Tv~~G~i~~v 591 (592)
T 3mca_A 580 --GDTVAAGIVKEL 591 (592)
T ss_dssp --SSEEEEEEEEEE
T ss_pred --CcEEEEEEEEEc
Confidence 267899998754
No 7
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=31.10 E-value=70 Score=28.29 Aligned_cols=54 Identities=24% Similarity=0.426 Sum_probs=37.4
Q ss_pred eecceEEecc-CCChhhhccccCCeeE--eccC--ccceeeccchhcccCCCCCCCCCCCceeEEeeeccccc
Q 004847 479 FKKTALIKDM-FTSDLEVAQCEGKEVR--TVSG--IRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRIL 546 (727)
Q Consensus 479 ~K~TAfIk~M-F~s~lEV~kFkga~Lr--TksG--iRG~IKkaL~~~~g~~~~~~~~~GthG~FRatFedkIl 546 (727)
+-|||.||== =++.+|..+|-|-.+- ++.| |.|.|..+- |..|.+||.|...+-
T Consensus 18 ~~~taLlkieGV~~~~~a~fylGKrvayv~~~g~~iwGKVtr~H--------------GnsGvVrAkF~~nLP 76 (87)
T 3j21_c 18 HNNVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRVH--------------GTKGAVRARFEKGLP 76 (87)
T ss_dssp CTTCEEEEESSCCSHHHHGGGTTCEEEECCSSSCCEEEEEEEEC--------------CSSSCEEEEESSCCC
T ss_pred CCCeEEEEEcCcCCHHHHHhhcCceEEEEeCCCCEEEEEEEeee--------------CCCCeEEEEeCCCCC
Confidence 3355555532 4677888888775443 3333 579999987 689999999987664
No 8
>3iz5_j 60S ribosomal protein L35A (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_j
Probab=26.68 E-value=68 Score=29.53 Aligned_cols=53 Identities=25% Similarity=0.357 Sum_probs=37.1
Q ss_pred cceEEecc-CCChhhhccccCCeeEe---------ccCc---cceeeccchhcccCCCCCCCCCCCceeEEeeecccccc
Q 004847 481 KTALIKDM-FTSDLEVAQCEGKEVRT---------VSGI---RGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILM 547 (727)
Q Consensus 481 ~TAfIk~M-F~s~lEV~kFkga~LrT---------ksGi---RG~IKkaL~~~~g~~~~~~~~~GthG~FRatFedkIl~ 547 (727)
|||.||=- =++.+|..+|-|-.+-= .+.+ -|.|..+- |..|.+||.|...+-.
T Consensus 30 ~taLlKIeGV~~~~~a~fylGKrvayvykak~~~~g~k~R~iwGKVtR~H--------------GnsGvVrAkF~~nLP~ 95 (111)
T 3iz5_j 30 NTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKSNDSTIRCIWGKVTRPH--------------GNSGVVRAKFRSNLPP 95 (111)
T ss_dssp CEEEEEESSCSTTHHHHTTSCCCCEECCCCCSSSCCCCSCCEECEEEEES--------------SSSSCEEEECSSCCST
T ss_pred CeEEEEEcCcCCHHHHHhhcCcEEEEEEeccccCCCceEEEEEEEEEeee--------------CCCCEEEEEeCCCCCh
Confidence 45555532 46788999998866521 1223 49999997 6899999999987743
No 9
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=26.33 E-value=3.9e+02 Score=28.78 Aligned_cols=130 Identities=11% Similarity=0.058 Sum_probs=71.9
Q ss_pred HHhcCCCCCcEEEEEEeecChhhhhcc----CCCC-ceeEeeeccccceeeEEEEEEEecCcccccccccCCcEEEEeee
Q 004847 316 LELEGFRTGTYLRMEIHDVPFEMVEYF----DPCH-PVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGW 390 (727)
Q Consensus 316 ~~~eG~~~G~YVrI~I~~VP~e~ve~f----dp~~-PlIvgGLl~~E~k~gvvq~rikRhrw~~~kiLKSkDpLifsiGw 390 (727)
..++.+.+|+.|.|.|.++...-+..= ++.. |+-+ ...=-.++.+- + ++.+|+...++++.||-
T Consensus 329 ~~~~~a~aG~~v~~~l~~~~~~di~rG~vl~~~~~~~~~~-------~~~f~a~v~~l---~-~~~~l~~g~~~~l~~~t 397 (483)
T 3p26_A 329 EETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHS-------AQCFVLELTTF---D-MNRPLLPGTPFILFIGV 397 (483)
T ss_dssp CEESCEETTCEEEEEEESCCGGGCCTTCEEECTTCCCCEE-------CSEEEEEEEEC---S-CSSCBCTTCEEEEEETT
T ss_pred ccccEECCCCEEEEEEEecccccCCceEEEEcCCCCCCce-------eeEEEEEEEEE---C-CCCCCCCCCEEEEEeCc
Confidence 445567889999999988765443320 1222 2211 11112233222 2 57799999999999998
Q ss_pred eeeeeee--eeeeccCCccce--eeeecCCCceEEEEEEe-----ecCC------CCccEEEEEecCCCCCCeEEEEEEE
Q 004847 391 RRFQTIP--VYAIEDRSGRHR--MLKYTPEHMHCLATFWG-----PLAP------PQTGVVAVQNLSNNQASFRIAATAV 455 (727)
Q Consensus 391 RRFqt~P--IyS~~d~n~R~R--~lKYtpehm~c~ATfyG-----Pit~------p~tgvlafq~~s~~~~~frI~ATG~ 455 (727)
.+-.+.- |-+.-|.++-.+ --++...+..+++.|-- ||++ +.+|=+++... -+.+|.|+
T Consensus 398 ~~~~~~v~~i~~~~d~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~~------~~tv~~G~ 471 (483)
T 3p26_A 398 KEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKD------GRTIAAGK 471 (483)
T ss_dssp EEEEEEEEEEEEEEEETTEECCSCCSCBCSSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEET------TEEEEEEE
T ss_pred eEEEEEEEEEEEEEcCCCcccccCccCcCCCCEEEEEEEECCCCCcEEEEecccCccCCCEEEEeC------CCEEEEEE
Confidence 8765432 222223332111 12356667666666643 6532 34554444331 26789999
Q ss_pred EecccCC
Q 004847 456 VLEFNHE 462 (727)
Q Consensus 456 Vl~~D~~ 462 (727)
|...+..
T Consensus 472 i~~~~~~ 478 (483)
T 3p26_A 472 ISEITQH 478 (483)
T ss_dssp EEEECC-
T ss_pred EEEeccc
Confidence 9887654
No 10
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=22.52 E-value=6.8e+02 Score=26.12 Aligned_cols=65 Identities=11% Similarity=0.099 Sum_probs=43.0
Q ss_pred cccccCCcEEEEeeeeeeeeeeeeeeccCCccceeeeecCCCceEEEEEEeecCCCCccEEEEEecCCCCCCeEEEEEEE
Q 004847 376 KVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAV 455 (727)
Q Consensus 376 kiLKSkDpLifsiGwRRFqt~PIyS~~d~n~R~R~lKYtpehm~c~ATfyGPit~p~tgvlafq~~s~~~~~frI~ATG~ 455 (727)
.+|+...+++|++|-.+-...-.. .. . ..|...+--|+++..---++++... ....|++|+|.
T Consensus 343 ~~l~~g~~~~~~~~t~~~~~~v~~-~~----------~----~~~~~~~~~p~~~~~~~~~~~~~~~--~~~~r~ig~G~ 405 (408)
T 1s0u_A 343 EPLRTGEVLMLNIGTATTAGVITS-AR----------G----DIADIKLKLPICAEIGDRVAISRRV--GSRWRLIGYGT 405 (408)
T ss_dssp CCCCTTCEEEEEETTEEEEEEEEE-EE----------T----TEEEEEEEEEEECCTTCEEEEEEEC--SSSEEEEEEEE
T ss_pred cCCCCCCEEEEEEcCCEEEEEEEE-ec----------C----CEEEEEECCcEEecCCCEEEEEEec--CCCeEEEEEEE
Confidence 789999999999997654443222 11 0 2666777889876554444444432 23679999999
Q ss_pred Ee
Q 004847 456 VL 457 (727)
Q Consensus 456 Vl 457 (727)
|.
T Consensus 406 i~ 407 (408)
T 1s0u_A 406 IE 407 (408)
T ss_dssp EC
T ss_pred Ec
Confidence 86
No 11
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=21.29 E-value=7.4e+02 Score=26.14 Aligned_cols=129 Identities=12% Similarity=0.188 Sum_probs=70.9
Q ss_pred HhcCCCCCcEEEEEEeecChhhhhcc----CCCCceeEeeeccccceeeEEEEEEEecCcc-cccccccCCcEEEEeeee
Q 004847 317 ELEGFRTGTYLRMEIHDVPFEMVEYF----DPCHPVLVGGIGLGEQNVGYMQVRLKRHRWW-HKKVLKSRDPIIVSIGWR 391 (727)
Q Consensus 317 ~~eG~~~G~YVrI~I~~VP~e~ve~f----dp~~PlIvgGLl~~E~k~gvvq~rikRhrw~-~~kiLKSkDpLifsiGwR 391 (727)
.++.+.||..|.|.|.++...-+..= ++..|+.+. .-+.+.+. |. ++.+|+...+++|+||-.
T Consensus 285 ~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~~~~~~~~---------~~f~a~v~---~l~~~~~l~~g~~~~~~~~t~ 352 (435)
T 1jny_A 285 KMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNPPTVA---------DEFTARII---VVWHPTALANGYTPVLHVHTA 352 (435)
T ss_dssp EESEECTTCEEEEEEESSCGGGCCTTCEEECTTSCCCEE---------SEEEEEEE---ECCCSSCBCTTCCCEEEETTE
T ss_pred EEeEEcCCCEEEEEEecCCHHHcCCccEecCCCCCceEe---------EEEEEEEE---EECCCCcCCCCCEEEEEeCCc
Confidence 34557899999999998764433210 112122111 11112222 21 257899999999999988
Q ss_pred eeeee--eeeeeccCCccceee---eecCCCceEEEEE--EeecCC------CCccEEEEEecCCCCCCeEEEEEEEEec
Q 004847 392 RFQTI--PVYAIEDRSGRHRML---KYTPEHMHCLATF--WGPLAP------PQTGVVAVQNLSNNQASFRIAATAVVLE 458 (727)
Q Consensus 392 RFqt~--PIyS~~d~n~R~R~l---KYtpehm~c~ATf--yGPit~------p~tgvlafq~~s~~~~~frI~ATG~Vl~ 458 (727)
+-... .|.+.-|.++-.... ++...+..+.+.| --|++. +++|=++++.. -+.+|.|+|++
T Consensus 353 ~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~------~~tv~~G~i~~ 426 (435)
T 1jny_A 353 SVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDM------GKTVGVGIIVD 426 (435)
T ss_dssp EEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCEECCCTTTSGGGTEEEEEET------TEEEEEEEEEE
T ss_pred EEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEEECceEEEecCCcCCcCccEEEEEC------CeEEEEEEEee
Confidence 76654 343433433222222 3555666555443 355543 23345555543 17899999998
Q ss_pred ccCCe
Q 004847 459 FNHEV 463 (727)
Q Consensus 459 ~D~~~ 463 (727)
+.+..
T Consensus 427 ~~~~~ 431 (435)
T 1jny_A 427 VKPAK 431 (435)
T ss_dssp EEC--
T ss_pred ecCcc
Confidence 77644
No 12
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=20.02 E-value=8.2e+02 Score=26.15 Aligned_cols=130 Identities=14% Similarity=0.144 Sum_probs=74.1
Q ss_pred hcCCCCCcEEEEEEeecChhhhhccCCCCceeEeee---ccccceeeEEEEEEEecCcccccccccCCcEEEEeeeeeee
Q 004847 318 LEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGI---GLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQ 394 (727)
Q Consensus 318 ~eG~~~G~YVrI~I~~VP~e~ve~fdp~~PlIvgGL---l~~E~k~gvvq~rikRhrw~~~kiLKSkDpLifsiGwRRFq 394 (727)
+..+.||+.|.|.|.++...-+ ..-.++|.- .+.....=-.++.+-. ++.+|+...+.+|+||-.+-.
T Consensus 297 ~~~a~aG~~v~i~l~gi~~~~i-----~rG~vl~~~~~~~~~~~~~f~a~v~~l~----~~~~i~~g~~~~~~~~t~~~~ 367 (458)
T 1f60_A 297 LEQGVPGDNVGFNVKNVSVKEI-----RRGNVCGDAKNDPPKGCASFNATVIVLN----HPGQISAGYSPVLDCHTAHIA 367 (458)
T ss_dssp CSCBCTTCEEEEEESSCCTTTS-----CTTCEEEETTSSCCCCCSEEEEEEEECS----CSCCBCTTCCCEEEETTEEEE
T ss_pred EEEEcCCCEEEEEEcCCccccc-----CceeEEecCCCCCCceeeEEEEEEEEeC----CCCCCCCCCEEEEEeccceEE
Confidence 4557899999999988743322 233444432 1222222223333321 356899999999999998755
Q ss_pred ee--eeeeeccCCcccee---eeecCCCceEEE--EEEeecCC------CCccEEEEEecCCCCCCeEEEEEEEEecccC
Q 004847 395 TI--PVYAIEDRSGRHRM---LKYTPEHMHCLA--TFWGPLAP------PQTGVVAVQNLSNNQASFRIAATAVVLEFNH 461 (727)
Q Consensus 395 t~--PIyS~~d~n~R~R~---lKYtpehm~c~A--TfyGPit~------p~tgvlafq~~s~~~~~frI~ATG~Vl~~D~ 461 (727)
.. .|.+.-|.++-... -++...+..|.+ .+--|+++ +.+|=++++.. -+.+|.|+|+++.+
T Consensus 368 ~~i~~l~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~------~~tv~~G~v~~~~~ 441 (458)
T 1f60_A 368 CRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDM------RQTVAVGVIKSVDK 441 (458)
T ss_dssp EEEEEEEEEECTTTCCEEEESCSCBCTTCEEEEEEEESSCCCCCCTTTCGGGSEEEEEET------TEEEEEEEEEEEEC
T ss_pred EEEEEEEeEecCccccccccCccccCCCCEEEEEEEECCeEEEecCccCCCCCcEEEEEC------CeEEEEEEEEeecc
Confidence 43 23333343322222 135666665444 44567654 33445555542 17899999998877
Q ss_pred C
Q 004847 462 E 462 (727)
Q Consensus 462 ~ 462 (727)
.
T Consensus 442 ~ 442 (458)
T 1f60_A 442 T 442 (458)
T ss_dssp -
T ss_pred c
Confidence 5
Done!