Query 004847
Match_columns 727
No_of_seqs 212 out of 507
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 07:39:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004847.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004847hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wb1a2 b.43.3.1 (A:390-468) E 95.1 0.0097 7.1E-07 49.0 4.6 66 475-554 7-73 (79)
2 d1sqra_ b.43.3.3 (A:) Ribosoma 33.6 13 0.00097 30.7 3.2 54 479-546 18-76 (87)
3 d2cnda1 b.43.4.2 (A:11-124) Ni 19.7 97 0.007 24.6 6.2 45 319-372 31-75 (114)
4 d1yela1 b.142.1.2 (A:1-102) At 16.4 22 0.0016 29.1 1.3 47 334-395 24-72 (102)
5 d1ah9a_ b.40.4.5 (A:) Translat 15.7 42 0.0031 26.4 2.7 19 510-543 9-27 (71)
6 d1hr0w_ b.40.4.5 (W:) Translat 14.5 41 0.003 26.4 2.3 32 510-556 10-58 (71)
7 d2piaa1 b.43.4.2 (A:1-103) Pht 13.8 1.2E+02 0.0084 24.3 5.2 40 320-371 38-77 (103)
8 d1tvca1 b.43.4.2 (A:2-110) Met 12.3 32 0.0024 27.7 1.2 56 320-387 43-104 (109)
9 d1krha1 b.43.4.2 (A:106-205) B 10.1 50 0.0036 25.9 1.6 55 320-387 33-93 (100)
10 d1a8pa1 b.43.4.2 (A:2-100) Fer 9.9 48 0.0035 26.5 1.4 57 320-388 30-92 (99)
No 1
>d1wb1a2 b.43.3.1 (A:390-468) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]}
Probab=95.12 E-value=0.0097 Score=49.03 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=62.7
Q ss_pred eeEEeecceEEeccCCChhhhccccCCeeEeccC-ccceeeccchhcccCCCCCCCCCCCceeEEeeecccccccCEEEE
Q 004847 475 PCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSG-IRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFM 553 (727)
Q Consensus 475 P~KI~K~TAfIk~MF~s~lEV~kFkga~LrTksG-iRG~IKkaL~~~~g~~~~~~~~~GthG~FRatFedkIl~sDiVfL 553 (727)
-.||-|..++|-++=.|..-..+-.|-++++.++ |.|.||-.. ||.|+.-|-|++.+...|.|.|
T Consensus 7 ~i~i~K~r~~IegLA~sK~~aEkLIGe~v~i~~k~i~Gkik~Tf--------------GTkG~l~adF~geV~n~dkV~L 72 (79)
T d1wb1a2 7 KVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTF--------------GTKGLLTAEFSGNVENRDKVIL 72 (79)
T ss_dssp EEECCSSCCEETTSCSSHHHHHHSCSCCCEETTTCCCBCCCCCB--------------TTTTBBCCCBSSCCCSSCEEEE
T ss_pred cEEEecCcEEeeecccchhHHHhhcCcEEEecCCceEEEEeccc--------------cCceEEEEEeccccCCCceehh
Confidence 4688999999999999999999999999999999 999999988 7999999999999999999998
Q ss_pred e
Q 004847 554 R 554 (727)
Q Consensus 554 r 554 (727)
.
T Consensus 73 ~ 73 (79)
T d1wb1a2 73 N 73 (79)
T ss_dssp E
T ss_pred h
Confidence 6
No 2
>d1sqra_ b.43.3.3 (A:) Ribosomal protein L35ae {Pyrococcus furiosus [TaxId: 2261]}
Probab=33.58 E-value=13 Score=30.74 Aligned_cols=54 Identities=24% Similarity=0.456 Sum_probs=37.3
Q ss_pred eecceEEecc-CCChhhhccccCCee--EeccC--ccceeeccchhcccCCCCCCCCCCCceeEEeeeccccc
Q 004847 479 FKKTALIKDM-FTSDLEVAQCEGKEV--RTVSG--IRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRIL 546 (727)
Q Consensus 479 ~K~TAfIk~M-F~s~lEV~kFkga~L--rTksG--iRG~IKkaL~~~~g~~~~~~~~~GthG~FRatFedkIl 546 (727)
+-|||.||-- .++.+|..+|-|-.+ .++.| |.|.|..+- |..|..||.|...+-
T Consensus 18 ~~~~~Llkiegv~~k~~a~fylGKrv~y~~~~~r~iwGKVtr~H--------------GnsGvVrAkF~~nLP 76 (87)
T d1sqra_ 18 HNNVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRVH--------------GTKGAVRARFEKGLP 76 (87)
T ss_dssp SCCEEEEEESCCCCHHHHHHHTTCEEEECCSTTCCEEEEEEEES--------------SSSSCEEEECSSCCS
T ss_pred CCCEEEEEEcCcCCHHHHHhhcCcEEEEECCCCcEEEeeEeeec--------------CCCceEEEEecCCCC
Confidence 3355666533 677888888866443 33333 479999887 688999999987653
No 3
>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]}
Probab=19.66 E-value=97 Score=24.57 Aligned_cols=45 Identities=9% Similarity=-0.065 Sum_probs=29.4
Q ss_pred cCCCCCcEEEEEEeecChhhhhccCCCCceeEeeeccccceeeEEEEEEEecCc
Q 004847 319 EGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRW 372 (727)
Q Consensus 319 eG~~~G~YVrI~I~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvvq~rikRhrw 372 (727)
-++.||+||.|.+..-.......|. +......-+.+++.||++..
T Consensus 31 ~~~~~Gq~v~v~~~~~~~~~~R~Ys---------~~s~~~~~~~~~~~ik~~~~ 75 (114)
T d2cnda1 31 LGLPIGKHIFVCATIEGKLCMRAYT---------PTSMVDEIGHFDLLVKVYFK 75 (114)
T ss_dssp CCCCTTCEEEEEEEETTEEEEEEEC---------CCSCTTCCSEEEEEEECCCS
T ss_pred cCccceEEEEEEeecccceEEeeec---------cCCCCCCCCEEEEEEEeccC
Confidence 3588999999998754333333332 33344556788999998754
No 4
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=16.42 E-value=22 Score=29.09 Aligned_cols=47 Identities=23% Similarity=0.614 Sum_probs=28.5
Q ss_pred cChhhhhccCCCCc--eeEeeeccccceeeEEEEEEEecCcccccccccCCcEEEEeeeeeeee
Q 004847 334 VPFEMVEYFDPCHP--VLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQT 395 (727)
Q Consensus 334 VP~e~ve~fdp~~P--lIvgGLl~~E~k~gvvq~rikRhrw~~~kiLKSkDpLifsiGwRRFqt 395 (727)
+|..|+.++.+..| ++|-+ ++ -..| .-+..++...++|+-||..|..
T Consensus 24 IP~~F~~~~~~~~~~~i~L~d--~~------------G~~W-~v~~~~~~~~~~~~~GW~~Fv~ 72 (102)
T d1yela1 24 IPLGFNEYFPAPFPITVDLLD--YS------------GRSW-TVRMKKRGEKVFLTVGWENFVK 72 (102)
T ss_dssp CCHHHHTTCCCCCCSEEEEEE--TT------------SCEE-EEEEEEETTEEEECTTHHHHHH
T ss_pred CCHHHHHhCCCCCCCEEEEEc--CC------------CCEE-EEEEEEeCCeEEEccCHHHHHH
Confidence 99999998865443 22211 11 1223 3344445567889999998864
No 5
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=15.73 E-value=42 Score=26.35 Aligned_cols=19 Identities=21% Similarity=0.379 Sum_probs=15.8
Q ss_pred cceeeccchhcccCCCCCCCCCCCceeEEeeecc
Q 004847 510 RGQVKKAAKEEIGNQPKRKGGQPREGIARCTFED 543 (727)
Q Consensus 510 RG~IKkaL~~~~g~~~~~~~~~GthG~FRatFed 543 (727)
-|.|.++| +.|.|++..++
T Consensus 9 ~G~V~e~l---------------g~~~f~V~l~n 27 (71)
T d1ah9a_ 9 QGTVLETL---------------PNTMFRVELEN 27 (71)
T ss_dssp CEEEEEEC---------------SSSEEEEEETT
T ss_pred EEEEEEEc---------------CCCEEEEEeCC
Confidence 58899998 67889988776
No 6
>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=14.49 E-value=41 Score=26.44 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=22.8
Q ss_pred cceeeccchhcccCCCCCCCCCCCceeEEeeecc-----------------cccccCEEEEecc
Q 004847 510 RGQVKKAAKEEIGNQPKRKGGQPREGIARCTFED-----------------RILMSDIVFMRGW 556 (727)
Q Consensus 510 RG~IKkaL~~~~g~~~~~~~~~GthG~FRatFed-----------------kIl~sDiVfLrlw 556 (727)
.|.|.++| +.|.|++..++ .|+.+|+|.+.+|
T Consensus 10 ~G~V~~~l---------------~~~~f~V~l~ng~~~~a~i~GkmRk~ri~i~~GD~V~Vel~ 58 (71)
T d1hr0w_ 10 EGVVTEAL---------------PNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEIT 58 (71)
T ss_dssp EEECCCCC---------------TTTBCCCEESSSCBCCCEECHHHHHTCCCCCTTCEEEEECC
T ss_pred EEEEEEEC---------------CCCEEEEEECCCCEEEEEecchhheeeEEecCCCEEEEEEC
Confidence 48888888 56677766554 5677888888765
No 7
>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}
Probab=13.83 E-value=1.2e+02 Score=24.28 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEEeecChhhhhccCCCCceeEeeeccccceeeEEEEEEEecC
Q 004847 320 GFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHR 371 (727)
Q Consensus 320 G~~~G~YVrI~I~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvvq~rikRhr 371 (727)
.|.||+||.|.+.+ .. .++..+++. |+ .-+.+.+.|++..
T Consensus 38 ~f~pGQ~v~v~~~~---~~------~R~YSl~s~-p~--~~~~~~i~Vk~~~ 77 (103)
T d2piaa1 38 PFEAGANLTVAVPN---GS------RRTYSLCND-SQ--ERNRYVIAVKRDS 77 (103)
T ss_dssp CCCTTCEEEEECTT---SC------EEEEECCSC-TT--CCSEEEEEEECCT
T ss_pred CCCCCceEEEEEec---ce------eEEEEEecC-CC--CCCEEEEEEEEEC
Confidence 58999999998732 21 234444332 22 3467778888754
No 8
>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}
Probab=12.33 E-value=32 Score=27.75 Aligned_cols=56 Identities=9% Similarity=0.204 Sum_probs=30.5
Q ss_pred CCCCCcEEEEEEeecChhhhhccCCCCceeEeeeccccceeeEEEEEEEecC------cccccccccCCcEEEE
Q 004847 320 GFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHR------WWHKKVLKSRDPIIVS 387 (727)
Q Consensus 320 G~~~G~YVrI~I~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvvq~rikRhr------w~~~kiLKSkDpLifs 387 (727)
.|.||+||.|.+.+.+ -.+|+.+.+.-. |. +.+.+.|+++. | --.-|+..|.|.++
T Consensus 43 ~f~pGQ~v~l~~~g~~--------~~R~ySias~p~-~~--~~~~~~i~~~~~G~~S~~-l~~~l~~Gd~v~i~ 104 (109)
T d1tvca1 43 KFEPGQFMDLTIPGTD--------VSRSYSPANLPN-PE--GRLEFLIRVLPEGRFSDY-LRNDARVGQVLSVK 104 (109)
T ss_dssp SCCSCCEEEECTTSCS--------SSEEECCBCCSS-SS--CCEEEEECCCTTSSSHHH-HHHHSSSSSEEEEE
T ss_pred cCCCCcEEEEEECCcc--------ccccceeccCCc-CC--ceeEEEEEEeCCchHHHH-HHhhCCCCCEEEEe
Confidence 3799999999764422 123444433322 32 45666677652 2 22345666666554
No 9
>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=10.12 E-value=50 Score=25.86 Aligned_cols=55 Identities=11% Similarity=0.198 Sum_probs=31.5
Q ss_pred CCCCCcEEEEEEeecChhhhhccCCCCceeEeeeccccceeeEEEEEEEecC------cccccccccCCcEEEE
Q 004847 320 GFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHR------WWHKKVLKSRDPIIVS 387 (727)
Q Consensus 320 G~~~G~YVrI~I~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvvq~rikRhr------w~~~kiLKSkDpLifs 387 (727)
.|.||+||.|.|.+.+ ..+|..+.+. +.+. .+.+.|++.. | --.-|+..|.|.++
T Consensus 33 ~f~pGQ~v~l~i~g~~--------~~r~ys~~~~-~~~~---~~~~~i~~~~~G~~s~~-l~~~l~~Gd~v~v~ 93 (100)
T d1krha1 33 HFLAGQYVNVTLPGTT--------ETRSYSFSSQ-PGNR---LTGFVVRNVPQGKMSEY-LSVQAKAGDKMSFT 93 (100)
T ss_dssp CCCTTCEEEEECTTSS--------CEEEEECCSC-TTCS---EEEEEEECCTTCHHHHH-HHTTCCTTCEEEEE
T ss_pred CCCCCEEEEEEECCcc--------eeEEeeccCC-CccC---ceEEEEEEeeCCchhhh-hhccCCCCCEEEEe
Confidence 4789999999875432 1245554442 3332 3456666643 2 22346667777665
No 10
>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]}
Probab=9.92 E-value=48 Score=26.50 Aligned_cols=57 Identities=14% Similarity=0.173 Sum_probs=32.3
Q ss_pred CCCCCcEEEEEEeecChhhhhccCCCCceeEeeeccccceeeEEEEEEEec------CcccccccccCCcEEEEe
Q 004847 320 GFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRH------RWWHKKVLKSRDPIIVSI 388 (727)
Q Consensus 320 G~~~G~YVrI~I~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvvq~rikRh------rw~~~kiLKSkDpLifsi 388 (727)
.|+||+|+.|.+..-..... +|..+.+ .|.+..+ .+.+++. .|.+ -|+..|.|.++=
T Consensus 30 ~f~aGQ~~~l~~~~~g~~~~------R~ySi~S-~p~~~~~---~~~i~~~~~G~~S~~L~--~l~~Gd~v~v~~ 92 (99)
T d1a8pa1 30 RFENGQFVMIGLEVDGRPLM------RAYSIAS-PNYEEHL---EFFSIKVQNGPLTSRLQ--HLKEGDELMVSR 92 (99)
T ss_dssp CCCTTCEEEEEEEETTEEEE------EEEECCS-CTTSSEE---EEEEECCSSCSSHHHHT--TCCTTCEEEEES
T ss_pred ccCCCcEEEEeccCCCceeE------eeccccC-CCCCCcE---EEEEEEeCCCChhHHHH--hCCCCCEEEECC
Confidence 48999999999875433222 3444444 3445433 3334432 1323 267778887763
Done!