Query 004848
Match_columns 727
No_of_seqs 1665 out of 3115
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 13:55:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 3.6E-45 7.8E-50 363.6 25.7 374 264-717 115-488 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 9.6E-44 2.1E-48 353.5 30.5 420 208-717 103-522 (966)
3 KOG1840 Kinesin light chain [C 100.0 3.4E-31 7.4E-36 273.6 49.1 421 217-697 84-505 (508)
4 TIGR00990 3a0801s09 mitochondr 100.0 6E-32 1.3E-36 301.5 46.4 421 220-717 126-574 (615)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-30 2.3E-35 309.6 44.8 421 205-717 449-869 (899)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-30 3E-35 308.7 43.6 429 193-713 471-899 (899)
7 PRK11447 cellulose synthase su 100.0 8.4E-30 1.8E-34 302.3 46.6 454 194-717 119-703 (1157)
8 PRK11447 cellulose synthase su 100.0 2.4E-29 5.3E-34 298.4 48.2 448 200-713 160-739 (1157)
9 TIGR00990 3a0801s09 mitochondr 100.0 2.8E-29 6E-34 280.1 40.1 414 191-672 131-572 (615)
10 KOG2002 TPR-containing nuclear 100.0 1.5E-28 3.2E-33 258.8 40.2 452 208-717 257-748 (1018)
11 KOG1840 Kinesin light chain [C 100.0 4.5E-27 9.7E-32 243.2 41.7 291 424-717 191-482 (508)
12 KOG2002 TPR-containing nuclear 100.0 1.1E-26 2.4E-31 244.8 41.8 433 208-713 151-592 (1018)
13 KOG0547 Translocase of outer m 100.0 3.6E-26 7.8E-31 223.2 36.9 436 219-717 113-569 (606)
14 PRK15174 Vi polysaccharide exp 100.0 1.4E-25 3.1E-30 249.1 42.2 362 268-703 45-410 (656)
15 PRK10049 pgaA outer membrane p 100.0 1.8E-25 3.9E-30 253.8 43.2 432 214-717 8-459 (765)
16 PRK15174 Vi polysaccharide exp 100.0 1.4E-25 3.1E-30 249.1 40.5 336 311-717 45-384 (656)
17 PRK09782 bacteriophage N4 rece 99.9 4.1E-24 9E-29 242.1 42.8 459 192-717 49-709 (987)
18 PRK10049 pgaA outer membrane p 99.9 8.8E-24 1.9E-28 240.0 38.3 414 198-671 26-456 (765)
19 KOG0547 Translocase of outer m 99.9 1E-23 2.2E-28 206.2 31.6 427 189-674 117-569 (606)
20 KOG2003 TPR repeat-containing 99.9 1.3E-23 2.8E-28 203.0 25.1 409 221-699 201-709 (840)
21 KOG2003 TPR repeat-containing 99.9 9.6E-23 2.1E-27 197.0 27.0 391 215-667 231-718 (840)
22 PRK14574 hmsH outer membrane p 99.9 1.7E-20 3.6E-25 208.6 47.5 438 212-717 25-516 (822)
23 PRK09782 bacteriophage N4 rece 99.9 1.3E-21 2.9E-26 221.8 38.4 361 262-700 373-760 (987)
24 KOG1130 Predicted G-alpha GTPa 99.9 1.9E-22 4.2E-27 192.9 25.2 329 271-616 23-371 (639)
25 KOG1126 DNA-binding cell divis 99.9 5.2E-23 1.1E-27 209.9 22.6 304 351-717 318-623 (638)
26 KOG0548 Molecular co-chaperone 99.9 1E-21 2.3E-26 195.6 30.9 412 223-717 4-458 (539)
27 PRK11788 tetratricopeptide rep 99.9 4.8E-21 1E-25 203.3 38.1 310 350-713 35-346 (389)
28 KOG1155 Anaphase-promoting com 99.9 1.2E-20 2.6E-25 183.8 36.8 374 265-716 164-538 (559)
29 KOG1173 Anaphase-promoting com 99.9 1.1E-20 2.4E-25 188.8 35.2 430 221-717 49-521 (611)
30 PRK11788 tetratricopeptide rep 99.9 1.4E-20 3.1E-25 199.7 37.6 309 310-671 37-347 (389)
31 KOG1155 Anaphase-promoting com 99.9 6.4E-20 1.4E-24 178.8 37.7 374 219-670 162-535 (559)
32 KOG1130 Predicted G-alpha GTPa 99.9 1E-21 2.2E-26 187.9 24.3 330 357-702 24-373 (639)
33 KOG1126 DNA-binding cell divis 99.9 1.2E-21 2.6E-26 200.1 24.6 301 309-671 318-620 (638)
34 KOG4162 Predicted calmodulin-b 99.9 3.6E-19 7.7E-24 184.4 40.1 434 219-717 321-786 (799)
35 PLN03218 maturation of RBCL 1; 99.9 5.8E-18 1.3E-22 193.7 51.1 416 219-714 368-783 (1060)
36 PLN03081 pentatricopeptide (PP 99.9 1.9E-19 4.1E-24 204.3 37.2 432 197-715 97-558 (697)
37 KOG2076 RNA polymerase III tra 99.9 4E-19 8.7E-24 187.1 36.0 393 265-713 139-554 (895)
38 KOG2076 RNA polymerase III tra 99.9 2.8E-19 6.2E-24 188.2 32.8 355 308-717 139-515 (895)
39 KOG1173 Anaphase-promoting com 99.9 3.3E-19 7.1E-24 178.4 30.9 418 220-695 81-534 (611)
40 PRK14574 hmsH outer membrane p 99.9 4E-18 8.7E-23 189.8 42.6 418 193-672 40-514 (822)
41 PLN03218 maturation of RBCL 1; 99.9 9.1E-18 2E-22 192.1 44.7 375 224-671 409-783 (1060)
42 PLN03081 pentatricopeptide (PP 99.9 1.1E-18 2.5E-23 197.9 35.0 372 217-670 155-556 (697)
43 KOG1174 Anaphase-promoting com 99.8 3.1E-17 6.7E-22 157.8 37.4 422 221-717 43-503 (564)
44 KOG0548 Molecular co-chaperone 99.8 1.2E-17 2.6E-22 166.9 33.0 428 197-710 12-485 (539)
45 KOG0624 dsRNA-activated protei 99.8 1.9E-17 4E-22 155.5 32.1 333 260-671 33-370 (504)
46 PLN03077 Protein ECB2; Provisi 99.8 2.3E-17 5E-22 192.0 38.4 427 197-714 232-720 (857)
47 PRK04841 transcriptional regul 99.8 7.1E-16 1.5E-20 182.0 50.5 421 220-673 340-762 (903)
48 KOG4162 Predicted calmodulin-b 99.8 1.1E-16 2.3E-21 166.2 32.3 413 204-672 340-784 (799)
49 KOG1129 TPR repeat-containing 99.8 3.8E-18 8.2E-23 159.1 19.1 284 359-694 188-473 (478)
50 PLN03077 Protein ECB2; Provisi 99.8 3.1E-16 6.7E-21 182.6 39.0 428 199-711 133-651 (857)
51 PRK04841 transcriptional regul 99.8 6.4E-15 1.4E-19 174.0 50.3 423 264-717 340-763 (903)
52 KOG0495 HAT repeat protein [RN 99.8 9.1E-15 2E-19 148.6 40.9 428 211-717 400-883 (913)
53 KOG0624 dsRNA-activated protei 99.8 2.6E-15 5.7E-20 141.2 34.2 327 215-629 32-370 (504)
54 KOG1129 TPR repeat-containing 99.8 1.1E-17 2.4E-22 155.9 18.1 283 317-651 188-472 (478)
55 KOG1174 Anaphase-promoting com 99.8 2.3E-15 4.9E-20 145.1 33.4 289 346-697 228-518 (564)
56 KOG0495 HAT repeat protein [RN 99.8 1E-15 2.2E-20 155.4 32.6 369 217-671 512-880 (913)
57 KOG1156 N-terminal acetyltrans 99.8 1.3E-14 2.8E-19 148.1 40.5 419 221-712 7-466 (700)
58 PF13429 TPR_15: Tetratricopep 99.7 1.2E-17 2.6E-22 167.8 14.1 266 396-714 12-277 (280)
59 PF13429 TPR_15: Tetratricopep 99.7 1E-17 2.3E-22 168.2 13.3 266 270-588 13-278 (280)
60 KOG1127 TPR repeat-containing 99.7 3.6E-15 7.8E-20 158.3 31.4 442 208-717 479-999 (1238)
61 KOG1941 Acetylcholine receptor 99.7 1.4E-14 3E-19 137.4 31.5 346 221-588 6-361 (518)
62 PRK12370 invasion protein regu 99.7 3.2E-15 6.9E-20 164.0 31.6 254 406-716 275-537 (553)
63 KOG1941 Acetylcholine receptor 99.7 1.4E-14 3.1E-19 137.2 31.2 345 268-629 9-360 (518)
64 COG3063 PilF Tfp pilus assembl 99.7 7.8E-16 1.7E-20 137.8 21.4 208 471-717 32-239 (250)
65 TIGR00540 hemY_coli hemY prote 99.7 3.2E-14 7E-19 150.4 37.6 315 350-715 84-400 (409)
66 PRK12370 invasion protein regu 99.7 1.7E-15 3.6E-20 166.2 27.5 263 224-545 261-534 (553)
67 KOG1156 N-terminal acetyltrans 99.7 2.3E-13 4.9E-18 139.1 40.4 443 212-717 32-514 (700)
68 TIGR02521 type_IV_pilW type IV 99.7 2.2E-15 4.8E-20 147.5 25.5 208 470-716 27-234 (234)
69 PRK11189 lipoprotein NlpI; Pro 99.7 1.9E-15 4.1E-20 151.9 25.1 247 406-699 40-286 (296)
70 TIGR00540 hemY_coli hemY prote 99.7 1.1E-14 2.3E-19 154.0 31.8 318 221-593 84-405 (409)
71 KOG1915 Cell cycle control pro 99.7 5.9E-13 1.3E-17 130.8 40.6 432 219-717 71-539 (677)
72 KOG2376 Signal recognition par 99.7 3.5E-13 7.6E-18 136.3 39.5 431 222-717 13-490 (652)
73 KOG1127 TPR repeat-containing 99.7 1.5E-14 3.2E-19 153.7 30.4 374 278-717 471-882 (1238)
74 TIGR02521 type_IV_pilW type IV 99.7 6.8E-15 1.5E-19 144.0 25.8 207 427-671 26-232 (234)
75 COG3063 PilF Tfp pilus assembl 99.7 4.5E-15 9.7E-20 133.0 21.6 208 306-550 33-240 (250)
76 cd05804 StaR_like StaR_like; a 99.7 6.1E-14 1.3E-18 146.8 34.3 333 309-677 7-342 (355)
77 cd05804 StaR_like StaR_like; a 99.7 2E-14 4.3E-19 150.5 29.9 339 217-595 2-344 (355)
78 PRK10747 putative protoheme IX 99.7 1.1E-13 2.3E-18 145.6 35.3 303 350-715 84-391 (398)
79 COG2956 Predicted N-acetylgluc 99.7 1.1E-13 2.3E-18 129.9 30.5 305 312-670 39-346 (389)
80 PRK11189 lipoprotein NlpI; Pro 99.7 1.1E-14 2.4E-19 146.3 25.2 224 238-503 42-265 (296)
81 COG2956 Predicted N-acetylgluc 99.7 3E-13 6.6E-18 126.9 32.5 284 356-694 41-325 (389)
82 PRK10747 putative protoheme IX 99.7 3.5E-14 7.6E-19 149.2 29.6 308 221-588 84-391 (398)
83 KOG1125 TPR repeat-containing 99.7 3.5E-15 7.5E-20 150.7 20.4 270 396-704 289-562 (579)
84 KOG0550 Molecular chaperone (D 99.7 5.8E-15 1.3E-19 142.7 21.0 300 306-672 47-351 (486)
85 KOG1125 TPR repeat-containing 99.7 2.8E-15 6E-20 151.4 19.6 269 270-577 290-561 (579)
86 KOG0550 Molecular chaperone (D 99.7 1.6E-14 3.4E-19 139.7 23.1 291 219-549 47-353 (486)
87 KOG2376 Signal recognition par 99.7 6.4E-12 1.4E-16 127.3 40.4 456 192-704 17-511 (652)
88 KOG3785 Uncharacterized conser 99.6 4.2E-12 9.1E-17 120.4 33.1 416 232-717 33-493 (557)
89 KOG1915 Cell cycle control pro 99.6 2.9E-11 6.3E-16 119.1 38.3 390 265-714 73-500 (677)
90 KOG3785 Uncharacterized conser 99.6 4.1E-12 8.8E-17 120.5 28.5 412 197-668 32-487 (557)
91 PF12569 NARP1: NMDA receptor- 99.6 1.1E-11 2.4E-16 131.1 33.3 320 266-635 5-340 (517)
92 PF12569 NARP1: NMDA receptor- 99.6 4E-11 8.6E-16 127.0 37.2 325 220-599 3-346 (517)
93 KOG2300 Uncharacterized conser 99.5 2.6E-09 5.7E-14 105.9 42.4 462 220-709 45-551 (629)
94 PLN02789 farnesyltranstransfer 99.5 7.4E-12 1.6E-16 125.3 25.5 231 437-716 42-304 (320)
95 TIGR03302 OM_YfiO outer membra 99.5 6.2E-12 1.3E-16 123.0 21.0 180 514-716 30-234 (235)
96 PF14938 SNAP: Soluble NSF att 99.5 7.3E-12 1.6E-16 125.0 21.3 229 392-629 35-266 (282)
97 KOG2047 mRNA splicing factor [ 99.5 5.7E-09 1.2E-13 107.1 41.9 406 220-669 101-613 (835)
98 TIGR03302 OM_YfiO outer membra 99.5 3.2E-11 7E-16 117.9 25.3 195 428-670 29-231 (235)
99 KOG2300 Uncharacterized conser 99.4 9.1E-08 2E-12 95.2 46.8 464 220-717 6-517 (629)
100 PLN02789 farnesyltranstransfer 99.4 3.2E-11 7E-16 120.7 23.7 208 275-530 47-268 (320)
101 KOG2047 mRNA splicing factor [ 99.4 7.4E-09 1.6E-13 106.3 39.1 260 346-628 345-614 (835)
102 PF14938 SNAP: Soluble NSF att 99.4 2.8E-11 6E-16 120.9 21.0 231 474-716 35-268 (282)
103 KOG4340 Uncharacterized conser 99.4 2.2E-09 4.8E-14 99.9 29.7 226 275-541 20-265 (459)
104 COG3071 HemY Uncharacterized e 99.4 1.4E-08 3E-13 99.2 35.8 305 351-715 85-391 (400)
105 KOG3617 WD40 and TPR repeat-co 99.3 9.5E-08 2.1E-12 100.6 42.9 431 270-717 831-1362(1416)
106 COG3071 HemY Uncharacterized e 99.3 4.3E-09 9.3E-14 102.7 29.7 302 223-589 86-392 (400)
107 KOG4340 Uncharacterized conser 99.3 1.9E-09 4E-14 100.4 25.8 394 198-673 21-445 (459)
108 PF10345 Cohesin_load: Cohesin 99.3 2.1E-06 4.6E-11 95.6 55.3 477 219-712 57-604 (608)
109 PRK14720 transcript cleavage f 99.3 4.3E-10 9.4E-15 124.3 23.6 260 344-672 25-284 (906)
110 PRK15359 type III secretion sy 99.3 8.6E-11 1.9E-15 104.0 13.8 127 537-697 13-139 (144)
111 PRK15359 type III secretion sy 99.2 1E-10 2.3E-15 103.4 12.5 112 578-717 13-124 (144)
112 PRK10370 formate-dependent nit 99.2 8.8E-10 1.9E-14 103.1 18.5 122 571-717 52-176 (198)
113 PRK15179 Vi polysaccharide bio 99.2 1E-09 2.2E-14 120.9 21.2 158 531-717 63-220 (694)
114 PF10345 Cohesin_load: Cohesin 99.2 7.2E-06 1.6E-10 91.4 52.0 442 262-716 56-565 (608)
115 PRK14720 transcript cleavage f 99.2 2.2E-09 4.7E-14 118.9 23.6 236 213-485 23-268 (906)
116 KOG3617 WD40 and TPR repeat-co 99.2 2.3E-07 5E-12 97.8 36.8 301 271-629 806-1174(1416)
117 PRK15179 Vi polysaccharide bio 99.2 1.4E-09 3E-14 119.8 21.9 162 317-505 58-219 (694)
118 KOG3060 Uncharacterized conser 99.2 1.7E-08 3.8E-13 92.3 23.8 210 406-655 26-238 (289)
119 KOG1128 Uncharacterized conser 99.2 1.7E-08 3.7E-13 105.6 26.8 227 262-551 395-621 (777)
120 PRK10370 formate-dependent nit 99.1 1E-08 2.2E-13 95.9 19.9 120 530-672 52-174 (198)
121 KOG1128 Uncharacterized conser 99.1 2E-08 4.3E-13 105.1 23.1 223 393-676 399-621 (777)
122 KOG3060 Uncharacterized conser 99.1 3.4E-08 7.3E-13 90.5 21.6 195 488-717 26-223 (289)
123 PRK15363 pathogenicity island 99.1 9.9E-09 2.2E-13 88.7 16.0 110 558-688 35-144 (157)
124 TIGR02552 LcrH_SycD type III s 99.1 2.3E-09 5E-14 94.6 12.6 102 599-717 16-117 (135)
125 PRK15363 pathogenicity island 99.0 3.5E-09 7.6E-14 91.5 12.7 100 599-715 34-133 (157)
126 COG5010 TadD Flp pilus assembl 99.0 1.3E-08 2.9E-13 94.2 17.1 168 427-627 62-229 (257)
127 COG5010 TadD Flp pilus assembl 99.0 2E-08 4.3E-13 93.0 17.9 167 470-669 63-229 (257)
128 PF13424 TPR_12: Tetratricopep 99.0 1.3E-09 2.8E-14 85.4 8.7 77 638-716 1-77 (78)
129 PF13424 TPR_12: Tetratricopep 99.0 1.6E-09 3.6E-14 84.9 9.3 76 597-673 2-77 (78)
130 KOG3616 Selective LIM binding 99.0 3.1E-06 6.8E-11 88.4 35.0 268 269-587 710-1024(1636)
131 KOG0553 TPR repeat-containing 99.0 2.2E-09 4.7E-14 101.2 11.2 101 600-717 81-181 (304)
132 KOG0553 TPR repeat-containing 99.0 4.3E-09 9.3E-14 99.2 12.9 121 557-701 80-200 (304)
133 KOG3616 Selective LIM binding 99.0 3.5E-06 7.7E-11 88.0 34.8 226 268-545 664-910 (1636)
134 COG2909 MalT ATP-dependent tra 99.0 8.3E-06 1.8E-10 88.2 38.4 343 217-585 343-686 (894)
135 PF13525 YfiO: Outer membrane 99.0 3.2E-07 6.9E-12 86.7 25.2 183 432-662 5-198 (203)
136 KOG1839 Uncharacterized protei 99.0 1.7E-07 3.6E-12 105.2 25.5 465 238-721 640-1136(1236)
137 CHL00033 ycf3 photosystem I as 99.0 2.5E-08 5.5E-13 91.4 16.2 118 557-687 34-158 (168)
138 TIGR02552 LcrH_SycD type III s 99.0 1.9E-08 4E-13 88.8 14.6 110 539-671 5-114 (135)
139 PRK10866 outer membrane biogen 98.9 7.1E-07 1.5E-11 86.3 25.5 188 432-667 32-237 (243)
140 KOG1585 Protein required for f 98.9 2.5E-06 5.5E-11 77.8 26.4 221 392-624 31-251 (308)
141 PF13525 YfiO: Outer membrane 98.9 3.6E-07 7.8E-12 86.3 22.2 183 265-494 5-198 (203)
142 PF04733 Coatomer_E: Coatomer 98.9 4.5E-08 9.7E-13 97.0 15.6 258 400-717 9-268 (290)
143 PF04733 Coatomer_E: Coatomer 98.9 1.3E-08 2.8E-13 100.8 11.0 254 358-671 9-265 (290)
144 TIGR02795 tol_pal_ybgF tol-pal 98.8 5.5E-08 1.2E-12 83.6 12.9 106 601-717 3-108 (119)
145 PRK10866 outer membrane biogen 98.8 2.1E-06 4.5E-11 83.1 24.9 189 473-710 31-237 (243)
146 CHL00033 ycf3 photosystem I as 98.8 8.2E-08 1.8E-12 88.1 13.9 122 470-597 31-152 (168)
147 PLN03088 SGT1, suppressor of 98.8 7.2E-08 1.6E-12 99.3 14.8 113 561-697 5-117 (356)
148 KOG1839 Uncharacterized protei 98.8 5.9E-07 1.3E-11 100.9 22.5 214 475-690 933-1147(1236)
149 PLN03088 SGT1, suppressor of 98.8 4.2E-08 9.1E-13 101.0 12.9 98 603-717 5-102 (356)
150 KOG1070 rRNA processing protei 98.8 1.1E-06 2.4E-11 98.2 24.3 219 208-461 1445-1663(1710)
151 PF09976 TPR_21: Tetratricopep 98.8 3.3E-07 7.1E-12 81.6 16.9 135 221-377 11-145 (145)
152 PRK02603 photosystem I assembl 98.8 5.4E-07 1.2E-11 82.9 18.9 111 556-679 33-150 (172)
153 KOG1585 Protein required for f 98.8 6.7E-06 1.4E-10 75.1 24.6 224 470-708 27-250 (308)
154 KOG2471 TPR repeat-containing 98.8 1.2E-05 2.6E-10 80.6 28.5 409 264-710 99-680 (696)
155 PF09976 TPR_21: Tetratricopep 98.8 8.4E-07 1.8E-11 78.9 19.0 123 444-585 23-145 (145)
156 PRK02603 photosystem I assembl 98.8 2.8E-07 6E-12 84.8 16.4 108 258-379 28-142 (172)
157 PF13414 TPR_11: TPR repeat; P 98.8 4E-08 8.6E-13 74.8 8.2 66 642-716 3-69 (69)
158 KOG0543 FKBP-type peptidyl-pro 98.8 1.6E-07 3.4E-12 92.8 14.3 140 562-717 212-358 (397)
159 COG2909 MalT ATP-dependent tra 98.8 0.00041 8.9E-09 75.6 40.9 340 262-627 344-686 (894)
160 TIGR02795 tol_pal_ybgF tol-pal 98.7 3.1E-07 6.7E-12 78.9 14.0 103 559-671 3-105 (119)
161 KOG1586 Protein required for f 98.7 1.1E-05 2.4E-10 73.3 23.7 198 362-587 26-224 (288)
162 cd00189 TPR Tetratricopeptide 98.7 1E-07 2.2E-12 78.0 10.3 99 602-717 2-100 (100)
163 COG4783 Putative Zn-dependent 98.7 1.6E-06 3.5E-11 87.4 19.5 151 264-462 305-455 (484)
164 KOG2471 TPR repeat-containing 98.7 3.1E-06 6.7E-11 84.7 21.1 132 265-405 240-382 (696)
165 KOG0543 FKBP-type peptidyl-pro 98.7 4.6E-07 1E-11 89.5 15.1 145 219-381 206-357 (397)
166 COG4783 Putative Zn-dependent 98.7 1.4E-06 3.1E-11 87.8 18.7 152 429-629 303-454 (484)
167 KOG1070 rRNA processing protei 98.7 3.8E-06 8.3E-11 94.1 23.4 222 451-715 1443-1664(1710)
168 PRK10803 tol-pal system protei 98.7 3.4E-07 7.4E-12 89.0 13.6 106 601-717 143-249 (263)
169 PF13414 TPR_11: TPR repeat; P 98.7 1.8E-07 3.8E-12 71.2 8.9 64 600-671 3-67 (69)
170 PF12895 Apc3: Anaphase-promot 98.7 1.5E-07 3.3E-12 74.7 8.8 82 612-711 1-84 (84)
171 KOG3081 Vesicle coat complex C 98.6 1.4E-05 2.9E-10 74.4 22.2 249 359-670 17-269 (299)
172 KOG1586 Protein required for f 98.6 8.7E-06 1.9E-10 73.9 20.5 197 486-717 26-227 (288)
173 KOG3081 Vesicle coat complex C 98.6 1.5E-05 3.2E-10 74.1 22.3 255 400-717 16-274 (299)
174 COG3898 Uncharacterized membra 98.6 0.0003 6.4E-09 69.0 31.5 303 226-587 89-392 (531)
175 PF12895 Apc3: Anaphase-promot 98.6 2E-07 4.3E-12 74.1 8.2 83 278-376 2-84 (84)
176 COG3898 Uncharacterized membra 98.6 0.00046 1E-08 67.7 31.9 302 356-714 90-392 (531)
177 COG1729 Uncharacterized protei 98.5 1.1E-06 2.3E-11 83.0 12.0 104 603-717 144-247 (262)
178 PF12688 TPR_5: Tetratrico pep 98.5 4.7E-06 1E-10 70.0 14.5 99 559-670 2-103 (120)
179 PRK10803 tol-pal system protei 98.5 2.5E-06 5.3E-11 83.1 14.8 104 559-672 143-247 (263)
180 PF12688 TPR_5: Tetratrico pep 98.5 2.3E-06 5E-11 71.8 12.3 102 601-713 2-103 (120)
181 cd00189 TPR Tetratricopeptide 98.5 7.2E-07 1.6E-11 72.7 9.3 97 434-547 2-98 (100)
182 PF13432 TPR_16: Tetratricopep 98.5 9.6E-07 2.1E-11 66.1 8.4 63 646-717 1-63 (65)
183 COG4785 NlpI Lipoprotein NlpI, 98.5 4.3E-05 9.4E-10 68.6 19.4 230 428-700 61-291 (297)
184 PF13432 TPR_16: Tetratricopep 98.4 7.4E-07 1.6E-11 66.8 7.3 59 605-671 2-60 (65)
185 COG5159 RPN6 26S proteasome re 98.4 0.00019 4.2E-09 67.2 23.9 301 354-669 7-312 (421)
186 COG0457 NrfG FOG: TPR repeat [ 98.4 0.00028 6.1E-09 68.7 27.2 229 445-717 36-268 (291)
187 KOG1463 26S proteasome regulat 98.4 0.00026 5.6E-09 68.2 24.7 301 354-670 8-315 (411)
188 COG0457 NrfG FOG: TPR repeat [ 98.4 0.0009 1.9E-08 65.0 30.2 229 363-629 36-265 (291)
189 COG4785 NlpI Lipoprotein NlpI, 98.4 4.9E-05 1.1E-09 68.3 18.0 204 262-503 62-266 (297)
190 KOG0985 Vesicle coat protein c 98.4 0.0055 1.2E-07 67.4 36.4 155 395-577 1197-1373(1666)
191 KOG1914 mRNA cleavage and poly 98.4 0.0051 1.1E-07 63.3 36.8 146 211-378 10-165 (656)
192 PRK10153 DNA-binding transcrip 98.3 9.5E-06 2.1E-10 87.2 15.6 131 563-717 344-485 (517)
193 KOG4234 TPR repeat-containing 98.3 1.1E-05 2.4E-10 71.4 12.4 119 219-359 93-211 (271)
194 PF10300 DUF3808: Protein of u 98.3 0.0031 6.8E-08 67.6 33.7 187 483-692 197-397 (468)
195 KOG4234 TPR repeat-containing 98.3 1.4E-05 3E-10 70.7 12.8 125 561-704 98-222 (271)
196 PRK15331 chaperone protein Sic 98.3 6.2E-06 1.3E-10 71.9 10.3 99 599-714 36-134 (165)
197 PRK11906 transcriptional regul 98.3 4E-05 8.8E-10 78.1 17.7 159 311-499 258-432 (458)
198 PRK15331 chaperone protein Sic 98.3 1.4E-05 3E-10 69.7 12.4 103 552-670 31-133 (165)
199 KOG4555 TPR repeat-containing 98.3 2.4E-05 5.3E-10 64.0 12.8 103 602-717 45-147 (175)
200 KOG4555 TPR repeat-containing 98.3 2.6E-05 5.6E-10 63.9 12.9 101 434-547 45-145 (175)
201 PRK11906 transcriptional regul 98.3 1.2E-05 2.7E-10 81.7 13.7 136 560-717 257-404 (458)
202 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.5E-05 3.2E-10 81.8 14.4 118 564-709 175-292 (395)
203 COG4235 Cytochrome c biogenesi 98.3 1.8E-05 3.8E-10 75.8 13.7 103 598-717 154-259 (287)
204 KOG2053 Mitochondrial inherita 98.3 0.014 2.9E-07 64.0 43.4 230 232-503 20-255 (932)
205 KOG1464 COP9 signalosome, subu 98.2 0.00023 5E-09 66.2 19.8 242 321-572 40-286 (440)
206 COG4700 Uncharacterized protei 98.2 8.3E-05 1.8E-09 65.2 15.9 150 529-711 68-219 (251)
207 COG4105 ComL DNA uptake lipopr 98.2 0.0004 8.6E-09 65.2 21.6 186 431-664 33-226 (254)
208 COG4105 ComL DNA uptake lipopr 98.2 0.00019 4E-09 67.4 19.4 172 310-496 36-226 (254)
209 PRK10153 DNA-binding transcrip 98.2 3E-05 6.6E-10 83.4 16.5 131 310-461 341-482 (517)
210 PF13512 TPR_18: Tetratricopep 98.2 2.8E-05 6.1E-10 66.3 12.6 107 600-717 10-131 (142)
211 COG4700 Uncharacterized protei 98.2 0.00023 5.1E-09 62.4 18.2 162 359-550 65-226 (251)
212 KOG4648 Uncharacterized conser 98.2 3.3E-07 7.2E-12 87.3 1.0 230 435-717 100-333 (536)
213 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.8E-05 6.1E-10 79.8 14.2 120 356-500 175-294 (395)
214 COG1729 Uncharacterized protei 98.2 2.3E-05 4.9E-10 74.2 12.5 102 561-672 144-245 (262)
215 PF14559 TPR_19: Tetratricopep 98.2 5E-06 1.1E-10 62.9 6.6 67 610-692 1-67 (68)
216 KOG2796 Uncharacterized conser 98.1 0.00053 1.2E-08 63.7 19.8 138 562-717 181-318 (366)
217 KOG1464 COP9 signalosome, subu 98.1 0.00034 7.4E-09 65.1 18.4 243 363-614 40-286 (440)
218 PF08631 SPO22: Meiosis protei 98.1 0.0035 7.5E-08 62.5 27.5 257 231-502 3-274 (278)
219 PF08631 SPO22: Meiosis protei 98.1 0.0034 7.3E-08 62.6 27.3 254 318-586 3-274 (278)
220 COG4235 Cytochrome c biogenesi 98.1 0.00014 3E-09 69.9 15.9 116 558-693 156-274 (287)
221 KOG1463 26S proteasome regulat 98.1 0.0056 1.2E-07 59.3 26.2 301 399-716 11-318 (411)
222 PF13512 TPR_18: Tetratricopep 98.1 6.6E-05 1.4E-09 64.1 12.1 105 558-672 10-129 (142)
223 KOG2796 Uncharacterized conser 98.1 0.00086 1.9E-08 62.4 19.6 227 264-505 68-317 (366)
224 PF13371 TPR_9: Tetratricopept 98.1 1.9E-05 4.2E-10 60.6 8.0 58 606-671 1-58 (73)
225 KOG4648 Uncharacterized conser 98.1 1.1E-05 2.4E-10 77.2 7.4 97 604-717 101-197 (536)
226 KOG0985 Vesicle coat protein c 98.0 0.038 8.3E-07 61.2 35.9 251 219-537 1102-1374(1666)
227 COG5159 RPN6 26S proteasome re 98.0 0.0073 1.6E-07 57.0 24.5 232 312-550 7-239 (421)
228 KOG2610 Uncharacterized conser 98.0 0.018 3.9E-07 55.8 28.5 165 357-544 110-274 (491)
229 PF10300 DUF3808: Protein of u 98.0 0.021 4.5E-07 61.4 31.7 191 441-655 197-401 (468)
230 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 2.8E-05 6.1E-10 79.1 8.9 69 637-714 70-141 (453)
231 PF02259 FAT: FAT domain; Int 98.0 0.01 2.3E-07 61.8 28.8 266 398-697 4-305 (352)
232 KOG0890 Protein kinase of the 98.0 0.024 5.1E-07 68.7 33.4 410 226-693 1388-1855(2382)
233 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 3.5E-05 7.7E-10 78.4 9.0 68 596-671 71-141 (453)
234 PF13371 TPR_9: Tetratricopept 97.9 3E-05 6.4E-10 59.6 6.6 61 648-717 1-61 (73)
235 PF14559 TPR_19: Tetratricopep 97.8 5E-05 1.1E-09 57.3 6.6 53 443-503 2-54 (68)
236 KOG2610 Uncharacterized conser 97.8 0.034 7.3E-07 54.0 26.6 219 211-459 55-274 (491)
237 PF13374 TPR_10: Tetratricopep 97.8 4.1E-05 8.9E-10 51.3 4.9 41 642-682 2-42 (42)
238 PF02259 FAT: FAT domain; Int 97.8 0.073 1.6E-06 55.4 31.1 50 598-655 250-305 (352)
239 KOG2053 Mitochondrial inherita 97.7 0.12 2.5E-06 57.1 36.1 222 202-461 24-255 (932)
240 PF04184 ST7: ST7 protein; In 97.7 0.0029 6.2E-08 64.9 18.2 188 481-719 175-380 (539)
241 KOG4507 Uncharacterized conser 97.7 0.016 3.5E-07 60.2 23.0 112 209-337 201-312 (886)
242 PF07079 DUF1347: Protein of u 97.7 0.086 1.9E-06 53.5 40.1 143 268-424 9-160 (549)
243 KOG0545 Aryl-hydrocarbon recep 97.7 0.00054 1.2E-08 62.9 11.1 108 601-717 179-296 (329)
244 KOG1550 Extracellular protein 97.7 0.032 7E-07 61.4 27.2 279 324-671 228-538 (552)
245 KOG0890 Protein kinase of the 97.7 0.12 2.5E-06 63.2 32.6 371 270-692 1388-1797(2382)
246 PF04184 ST7: ST7 protein; In 97.6 0.0021 4.5E-08 65.8 16.1 133 226-376 173-321 (539)
247 PF13281 DUF4071: Domain of un 97.6 0.034 7.4E-07 56.4 24.0 207 445-671 112-334 (374)
248 KOG4642 Chaperone-dependent E3 97.6 0.00045 9.7E-09 63.3 9.2 100 435-551 13-112 (284)
249 KOG0545 Aryl-hydrocarbon recep 97.5 0.0029 6.4E-08 58.3 14.1 105 559-671 179-293 (329)
250 PF13374 TPR_10: Tetratricopep 97.5 0.00018 3.9E-09 48.0 4.9 41 600-640 2-42 (42)
251 PF03704 BTAD: Bacterial trans 97.5 0.011 2.3E-07 52.6 17.8 124 519-678 8-132 (146)
252 COG2976 Uncharacterized protei 97.5 0.007 1.5E-07 54.2 15.7 140 563-717 36-191 (207)
253 KOG1538 Uncharacterized conser 97.5 0.028 6E-07 59.2 21.9 83 519-627 749-831 (1081)
254 KOG0551 Hsp90 co-chaperone CNS 97.5 0.0011 2.3E-08 64.0 11.0 106 264-382 80-185 (390)
255 KOG1550 Extracellular protein 97.5 0.019 4.2E-07 63.2 22.5 283 280-629 227-538 (552)
256 PF13281 DUF4071: Domain of un 97.5 0.017 3.8E-07 58.5 19.7 206 491-717 116-337 (374)
257 COG2976 Uncharacterized protei 97.4 0.031 6.8E-07 50.2 18.7 97 561-671 92-188 (207)
258 PF12968 DUF3856: Domain of Un 97.4 0.033 7.1E-07 45.3 16.7 120 516-635 6-135 (144)
259 KOG4642 Chaperone-dependent E3 97.3 0.0007 1.5E-08 62.1 7.6 98 603-717 13-110 (284)
260 PF10602 RPN7: 26S proteasome 97.3 0.0093 2E-07 54.5 14.9 125 454-587 18-142 (177)
261 PF06552 TOM20_plant: Plant sp 97.3 0.0016 3.4E-08 57.7 9.3 92 616-717 7-112 (186)
262 KOG3783 Uncharacterized conser 97.3 0.28 6.1E-06 51.3 27.7 221 311-549 270-523 (546)
263 KOG0551 Hsp90 co-chaperone CNS 97.3 0.0071 1.5E-07 58.6 14.3 109 552-672 75-183 (390)
264 KOG3783 Uncharacterized conser 97.3 0.29 6.2E-06 51.2 27.3 239 394-671 269-520 (546)
265 PF09986 DUF2225: Uncharacteri 97.3 0.0034 7.5E-08 59.1 12.1 100 613-714 90-194 (214)
266 KOG4507 Uncharacterized conser 97.3 0.0072 1.6E-07 62.7 15.0 94 607-717 614-708 (886)
267 PF12968 DUF3856: Domain of Un 97.3 0.033 7.1E-07 45.3 15.3 120 349-468 6-136 (144)
268 PF13428 TPR_14: Tetratricopep 97.3 0.00064 1.4E-08 45.8 4.9 42 601-650 2-43 (44)
269 PF13428 TPR_14: Tetratricopep 97.3 0.00066 1.4E-08 45.8 4.9 42 643-692 2-43 (44)
270 PF09986 DUF2225: Uncharacteri 97.2 0.0068 1.5E-07 57.1 13.2 100 571-671 90-194 (214)
271 PF03704 BTAD: Bacterial trans 97.2 0.03 6.6E-07 49.7 16.7 108 268-383 9-129 (146)
272 KOG2041 WD40 repeat protein [G 97.2 0.47 1E-05 50.9 36.2 185 258-498 688-876 (1189)
273 PF10602 RPN7: 26S proteasome 97.2 0.02 4.4E-07 52.3 15.2 125 415-547 19-143 (177)
274 PF00515 TPR_1: Tetratricopept 97.2 0.00095 2E-08 42.0 4.6 33 684-717 1-33 (34)
275 KOG1258 mRNA processing protei 97.1 0.55 1.2E-05 49.9 38.8 391 208-656 66-489 (577)
276 PF06552 TOM20_plant: Plant sp 97.1 0.0078 1.7E-07 53.4 11.0 67 599-673 24-104 (186)
277 PF13431 TPR_17: Tetratricopep 97.1 0.00056 1.2E-08 42.9 2.9 34 622-663 1-34 (34)
278 KOG2041 WD40 repeat protein [G 97.0 0.67 1.4E-05 49.8 34.8 191 208-455 680-875 (1189)
279 COG3118 Thioredoxin domain-con 97.0 0.082 1.8E-06 51.0 17.8 154 220-406 133-286 (304)
280 PF07719 TPR_2: Tetratricopept 97.0 0.0017 3.7E-08 40.8 4.6 33 684-717 1-33 (34)
281 PF05843 Suf: Suppressor of fo 97.0 0.0084 1.8E-07 59.7 11.8 136 560-717 3-139 (280)
282 PF00515 TPR_1: Tetratricopept 96.9 0.003 6.4E-08 39.7 5.2 30 600-629 1-30 (34)
283 PF05843 Suf: Suppressor of fo 96.9 0.018 3.9E-07 57.4 13.3 136 394-549 3-139 (280)
284 PF13431 TPR_17: Tetratricopep 96.8 0.0014 3E-08 41.1 2.8 34 330-371 1-34 (34)
285 PF12862 Apc5: Anaphase-promot 96.8 0.031 6.7E-07 45.1 11.4 83 360-442 8-91 (94)
286 PF07079 DUF1347: Protein of u 96.8 0.81 1.8E-05 46.9 41.7 141 510-668 372-521 (549)
287 PF12862 Apc5: Anaphase-promot 96.8 0.032 7E-07 44.9 11.5 81 401-483 7-90 (94)
288 PF07719 TPR_2: Tetratricopept 96.7 0.0031 6.6E-08 39.6 4.1 33 350-382 1-33 (34)
289 PF13176 TPR_7: Tetratricopept 96.7 0.0051 1.1E-07 39.2 4.9 30 644-673 1-30 (36)
290 KOG1258 mRNA processing protei 96.6 1.3 2.8E-05 47.2 39.5 388 262-717 76-473 (577)
291 PF13176 TPR_7: Tetratricopept 96.6 0.0067 1.5E-07 38.7 5.0 33 352-384 1-33 (36)
292 PF13181 TPR_8: Tetratricopept 96.4 0.008 1.7E-07 37.7 4.8 32 685-717 2-33 (34)
293 KOG1538 Uncharacterized conser 96.4 0.81 1.8E-05 48.7 21.1 220 395-669 588-831 (1081)
294 COG3118 Thioredoxin domain-con 96.4 0.32 7E-06 47.0 17.0 161 520-710 137-297 (304)
295 COG0790 FOG: TPR repeat, SEL1 96.2 0.66 1.4E-05 46.8 19.8 170 272-488 48-236 (292)
296 PF13181 TPR_8: Tetratricopept 96.1 0.014 3E-07 36.5 4.7 31 351-381 2-32 (34)
297 COG0790 FOG: TPR repeat, SEL1 96.1 1.3 2.7E-05 44.7 21.2 166 443-656 52-236 (292)
298 KOG4814 Uncharacterized conser 96.1 2.7 5.8E-05 45.1 36.6 105 222-339 355-459 (872)
299 PF04910 Tcf25: Transcriptiona 96.0 0.44 9.5E-06 49.1 17.2 171 427-629 35-222 (360)
300 KOG0376 Serine-threonine phosp 95.9 0.007 1.5E-07 61.9 3.8 96 605-717 9-104 (476)
301 KOG2581 26S proteasome regulat 95.9 1.8 3.9E-05 43.7 19.9 141 276-422 137-277 (493)
302 KOG1308 Hsp70-interacting prot 95.9 0.005 1.1E-07 59.9 2.4 91 565-671 121-211 (377)
303 PRK13184 pknD serine/threonine 95.9 4.9 0.00011 46.7 34.7 102 230-353 484-592 (932)
304 KOG1914 mRNA cleavage and poly 95.9 2.9 6.4E-05 44.0 37.7 213 476-716 288-503 (656)
305 PF04910 Tcf25: Transcriptiona 95.9 0.39 8.4E-06 49.5 16.3 162 210-383 29-226 (360)
306 KOG1308 Hsp70-interacting prot 95.8 0.0029 6.2E-08 61.5 0.7 93 608-717 122-214 (377)
307 KOG0376 Serine-threonine phosp 95.8 0.012 2.6E-07 60.2 4.8 109 562-694 8-116 (476)
308 COG5107 RNA14 Pre-mRNA 3'-end 95.8 2.8 6.1E-05 43.0 31.7 436 210-717 31-534 (660)
309 PF13174 TPR_6: Tetratricopept 95.7 0.018 4E-07 35.6 3.9 32 685-717 1-32 (33)
310 PF11817 Foie-gras_1: Foie gra 95.7 2.4 5.1E-05 41.4 22.0 221 224-458 13-244 (247)
311 KOG2581 26S proteasome regulat 95.6 2.7 5.9E-05 42.5 19.7 151 225-383 129-280 (493)
312 PF00244 14-3-3: 14-3-3 protei 95.6 2.4 5.2E-05 40.8 21.7 185 477-676 4-203 (236)
313 KOG4814 Uncharacterized conser 95.5 4.6 0.0001 43.4 39.1 106 266-382 355-460 (872)
314 KOG0128 RNA-binding protein SA 95.4 5.5 0.00012 44.3 32.7 437 209-704 101-554 (881)
315 PF11817 Foie-gras_1: Foie gra 95.4 3 6.5E-05 40.7 23.2 187 352-543 12-244 (247)
316 KOG4322 Anaphase-promoting com 95.3 3.9 8.3E-05 41.8 28.1 197 513-716 269-473 (482)
317 PRK14707 hypothetical protein; 95.3 6 0.00013 48.7 24.4 366 312-684 835-1209(2710)
318 PRK14707 hypothetical protein; 95.2 12 0.00025 46.5 26.2 360 312-674 793-1157(2710)
319 PF10579 Rapsyn_N: Rapsyn N-te 95.0 0.11 2.5E-06 39.0 6.4 69 220-295 5-73 (80)
320 PF13174 TPR_6: Tetratricopept 95.0 0.034 7.4E-07 34.4 3.3 32 351-382 1-32 (33)
321 PF08424 NRDE-2: NRDE-2, neces 95.0 2.9 6.4E-05 42.6 19.1 148 426-587 13-183 (321)
322 COG5187 RPN7 26S proteasome re 94.9 3 6.5E-05 40.1 16.9 133 409-549 92-224 (412)
323 PF12739 TRAPPC-Trs85: ER-Golg 94.8 3.4 7.5E-05 43.8 19.8 178 394-590 210-402 (414)
324 KOG4322 Anaphase-promoting com 94.6 6 0.00013 40.5 29.4 194 470-670 269-470 (482)
325 PF12739 TRAPPC-Trs85: ER-Golg 94.6 3.9 8.5E-05 43.4 19.5 180 475-673 209-401 (414)
326 PF04190 DUF410: Protein of un 94.5 5.3 0.00012 39.2 25.6 219 404-656 2-242 (260)
327 PF00244 14-3-3: 14-3-3 protei 94.4 5.2 0.00011 38.6 18.5 183 435-633 4-202 (236)
328 PF09613 HrpB1_HrpK: Bacterial 94.3 0.79 1.7E-05 40.4 11.2 87 600-702 10-96 (160)
329 PF10516 SHNi-TPR: SHNi-TPR; 94.3 0.13 2.8E-06 32.9 4.6 36 643-678 2-37 (38)
330 PF08424 NRDE-2: NRDE-2, neces 94.3 4.3 9.4E-05 41.4 18.4 147 470-629 15-183 (321)
331 PF04781 DUF627: Protein of un 94.1 0.42 9E-06 39.0 8.2 95 271-379 2-107 (111)
332 PF14561 TPR_20: Tetratricopep 94.0 0.3 6.4E-06 38.8 7.3 71 620-704 8-78 (90)
333 KOG0687 26S proteasome regulat 94.0 6.9 0.00015 38.5 19.3 132 325-463 81-212 (393)
334 PF10579 Rapsyn_N: Rapsyn N-te 93.5 0.86 1.9E-05 34.5 8.4 70 311-385 9-78 (80)
335 KOG0686 COP9 signalosome, subu 93.5 1.5 3.2E-05 44.3 12.6 105 309-418 151-255 (466)
336 PF10516 SHNi-TPR: SHNi-TPR; 93.3 0.26 5.7E-06 31.5 4.7 35 601-635 2-36 (38)
337 PRK10941 hypothetical protein; 93.2 1.1 2.4E-05 43.9 11.3 82 598-692 179-260 (269)
338 PF04190 DUF410: Protein of un 93.2 9.1 0.0002 37.6 24.1 219 320-572 2-242 (260)
339 COG4976 Predicted methyltransf 93.2 0.098 2.1E-06 48.2 3.7 65 650-723 3-68 (287)
340 PF11207 DUF2989: Protein of u 93.1 3.3 7.1E-05 38.1 13.2 84 401-494 115-198 (203)
341 smart00028 TPR Tetratricopepti 93.1 0.12 2.6E-06 31.2 3.1 32 685-717 2-33 (34)
342 PF04781 DUF627: Protein of un 92.9 1.3 2.9E-05 36.1 9.4 94 564-670 2-106 (111)
343 PF14853 Fis1_TPR_C: Fis1 C-te 92.6 0.86 1.9E-05 31.8 6.9 39 643-689 2-40 (53)
344 PF04097 Nic96: Nup93/Nic96; 92.6 21 0.00046 40.1 26.3 31 513-543 410-440 (613)
345 COG4649 Uncharacterized protei 92.5 7.3 0.00016 34.7 15.2 134 225-378 62-195 (221)
346 KOG0687 26S proteasome regulat 92.4 7.9 0.00017 38.2 15.3 114 428-549 100-213 (393)
347 PF11207 DUF2989: Protein of u 92.3 3.6 7.8E-05 37.8 12.4 78 615-704 121-198 (203)
348 PF09613 HrpB1_HrpK: Bacterial 92.1 2.1 4.6E-05 37.7 10.3 88 429-533 7-94 (160)
349 PF14853 Fis1_TPR_C: Fis1 C-te 92.0 1.2 2.5E-05 31.2 7.0 40 601-648 2-41 (53)
350 COG3629 DnrI DNA-binding trans 91.9 3.9 8.5E-05 40.0 13.0 76 599-682 152-227 (280)
351 smart00101 14_3_3 14-3-3 homol 91.6 13 0.00029 35.7 22.0 183 353-547 4-201 (244)
352 COG4649 Uncharacterized protei 91.5 9.8 0.00021 33.9 16.3 148 482-670 47-195 (221)
353 PF10255 Paf67: RNA polymerase 91.5 1.9 4.1E-05 44.6 11.0 73 267-340 124-196 (404)
354 COG5107 RNA14 Pre-mRNA 3'-end 91.2 21 0.00045 37.0 30.5 172 515-713 300-494 (660)
355 TIGR02561 HrpB1_HrpK type III 91.2 3 6.6E-05 36.1 10.0 84 602-701 12-95 (153)
356 PRK10941 hypothetical protein; 91.1 0.56 1.2E-05 45.9 6.5 72 643-723 182-254 (269)
357 smart00101 14_3_3 14-3-3 homol 91.0 15 0.00033 35.3 24.1 182 477-672 4-201 (244)
358 smart00028 TPR Tetratricopepti 91.0 0.23 5.1E-06 29.8 2.6 31 351-381 2-32 (34)
359 PF14561 TPR_20: Tetratricopep 90.9 3.7 7.9E-05 32.6 9.9 50 328-385 8-57 (90)
360 COG3947 Response regulator con 90.8 7.6 0.00016 37.7 13.2 79 601-687 280-358 (361)
361 KOG1497 COP9 signalosome, subu 90.6 19 0.0004 35.5 18.6 111 348-459 101-211 (399)
362 KOG3824 Huntingtin interacting 90.5 0.68 1.5E-05 44.7 6.1 69 606-690 122-190 (472)
363 PF15015 NYD-SP12_N: Spermatog 90.4 5.9 0.00013 40.4 12.7 107 312-426 180-296 (569)
364 PF04053 Coatomer_WDAD: Coatom 90.4 10 0.00023 40.3 15.6 158 317-543 270-428 (443)
365 KOG2422 Uncharacterized conser 90.4 17 0.00038 38.8 16.5 152 470-630 280-449 (665)
366 KOG0128 RNA-binding protein SA 90.2 37 0.00079 38.2 32.9 152 346-503 109-260 (881)
367 PF15015 NYD-SP12_N: Spermatog 90.1 8.1 0.00018 39.4 13.4 62 311-380 231-292 (569)
368 KOG3807 Predicted membrane pro 90.1 21 0.00045 35.3 16.5 55 483-548 193-247 (556)
369 KOG2561 Adaptor protein NUB1, 90.1 13 0.00029 38.1 14.8 118 222-340 164-299 (568)
370 PF08626 TRAPPC9-Trs120: Trans 89.8 58 0.0013 40.0 24.8 154 392-548 242-476 (1185)
371 PF04053 Coatomer_WDAD: Coatom 89.6 6.7 0.00015 41.7 13.5 158 360-584 271-428 (443)
372 KOG2114 Vacuolar assembly/sort 89.3 43 0.00092 37.8 27.7 49 245-295 350-398 (933)
373 cd02682 MIT_AAA_Arch MIT: doma 89.2 3.1 6.7E-05 31.4 7.6 50 220-270 5-54 (75)
374 PRK13184 pknD serine/threonine 89.2 52 0.0011 38.6 32.5 108 271-386 481-588 (932)
375 PF07721 TPR_4: Tetratricopept 88.7 0.6 1.3E-05 27.0 2.8 24 267-290 3-26 (26)
376 COG5187 RPN7 26S proteasome re 88.7 25 0.00053 34.2 17.4 136 321-463 88-223 (412)
377 KOG2908 26S proteasome regulat 88.6 28 0.00061 34.7 17.9 95 526-622 84-179 (380)
378 KOG4014 Uncharacterized conser 88.5 17 0.00037 32.7 12.7 164 349-550 33-237 (248)
379 PF08311 Mad3_BUB1_I: Mad3/BUB 88.4 10 0.00022 32.4 11.3 87 488-585 40-126 (126)
380 KOG4014 Uncharacterized conser 88.3 17 0.00036 32.8 12.5 150 414-593 50-239 (248)
381 PF09670 Cas_Cas02710: CRISPR- 88.2 30 0.00064 36.2 16.9 141 518-675 132-274 (379)
382 KOG0686 COP9 signalosome, subu 88.2 33 0.00072 35.1 18.2 126 413-544 131-256 (466)
383 PF07721 TPR_4: Tetratricopept 88.2 0.64 1.4E-05 26.8 2.7 24 643-666 2-25 (26)
384 PF10952 DUF2753: Protein of u 87.6 13 0.00028 30.9 10.6 75 435-509 4-85 (140)
385 KOG1310 WD40 repeat protein [G 87.3 3.6 7.8E-05 43.1 9.1 103 216-337 369-474 (758)
386 KOG1310 WD40 repeat protein [G 87.0 3.7 7.9E-05 43.1 9.0 89 615-717 389-477 (758)
387 PF10952 DUF2753: Protein of u 87.0 16 0.00035 30.4 10.8 75 603-677 4-85 (140)
388 KOG4521 Nuclear pore complex, 87.0 64 0.0014 37.9 19.0 200 474-717 920-1135(1480)
389 KOG1497 COP9 signalosome, subu 86.9 34 0.00074 33.8 20.1 109 513-627 99-211 (399)
390 KOG3364 Membrane protein invol 86.7 8.5 0.00018 32.7 9.3 69 641-717 31-103 (149)
391 PF09670 Cas_Cas02710: CRISPR- 86.6 39 0.00084 35.4 16.7 65 268-337 134-198 (379)
392 KOG3824 Huntingtin interacting 86.2 1.4 3.1E-05 42.5 5.3 62 647-717 121-182 (472)
393 TIGR03504 FimV_Cterm FimV C-te 86.1 2.1 4.5E-05 28.6 4.5 25 646-670 3-27 (44)
394 PF08626 TRAPPC9-Trs120: Trans 86.0 96 0.0021 38.2 24.8 228 348-588 240-553 (1185)
395 PF05053 Menin: Menin; InterP 85.9 19 0.00042 38.5 13.6 75 430-507 275-351 (618)
396 TIGR02561 HrpB1_HrpK type III 85.8 8.5 0.00018 33.5 9.2 85 432-533 10-94 (153)
397 COG4976 Predicted methyltransf 85.4 1.1 2.5E-05 41.5 4.1 55 609-671 4-58 (287)
398 COG3629 DnrI DNA-binding trans 85.2 18 0.0004 35.5 12.5 70 430-507 151-220 (280)
399 cd02683 MIT_1 MIT: domain cont 84.8 6.9 0.00015 29.9 7.5 50 220-270 5-54 (77)
400 KOG2908 26S proteasome regulat 84.5 47 0.001 33.3 18.4 96 400-496 83-179 (380)
401 PF08311 Mad3_BUB1_I: Mad3/BUB 84.4 12 0.00027 31.9 9.8 87 279-377 40-126 (126)
402 PF04212 MIT: MIT (microtubule 83.9 5.6 0.00012 29.7 6.7 49 221-270 5-53 (69)
403 KOG2561 Adaptor protein NUB1, 83.5 8.6 0.00019 39.4 9.5 122 600-722 163-306 (568)
404 COG1747 Uncharacterized N-term 83.0 69 0.0015 34.1 21.9 164 437-629 71-234 (711)
405 PRK09169 hypothetical protein; 82.9 1.5E+02 0.0033 38.0 22.4 17 313-329 332-348 (2316)
406 PF10255 Paf67: RNA polymerase 82.8 5.6 0.00012 41.3 8.3 72 310-381 124-195 (404)
407 cd02678 MIT_VPS4 MIT: domain c 82.5 9.6 0.00021 29.0 7.6 51 220-271 5-55 (75)
408 KOG0889 Histone acetyltransfer 82.3 1.9E+02 0.0042 38.8 34.8 138 473-629 2735-2883(3550)
409 PF04097 Nic96: Nup93/Nic96; 81.8 97 0.0021 34.9 18.5 20 271-290 264-283 (613)
410 smart00745 MIT Microtubule Int 81.7 13 0.00027 28.5 8.1 49 220-269 7-55 (77)
411 KOG4563 Cell cycle-regulated h 80.9 5.7 0.00012 39.7 7.1 67 307-373 40-106 (400)
412 KOG4563 Cell cycle-regulated h 80.7 4.3 9.3E-05 40.5 6.2 62 643-704 42-103 (400)
413 KOG0276 Vesicle coat complex C 80.7 13 0.00028 40.0 9.9 49 318-379 647-695 (794)
414 PF05053 Menin: Menin; InterP 80.6 89 0.0019 33.8 15.9 73 557-632 276-350 (618)
415 TIGR03504 FimV_Cterm FimV C-te 80.6 2.4 5.2E-05 28.3 3.1 27 687-714 2-28 (44)
416 cd02656 MIT MIT: domain contai 79.6 16 0.00034 27.8 7.9 53 221-274 6-58 (75)
417 cd02684 MIT_2 MIT: domain cont 79.3 16 0.00035 27.8 7.7 52 220-272 5-56 (75)
418 COG3947 Response regulator con 79.2 36 0.00078 33.3 11.5 74 560-641 281-354 (361)
419 KOG3364 Membrane protein invol 78.7 29 0.00063 29.7 9.5 65 393-461 33-100 (149)
420 PHA02537 M terminase endonucle 77.5 20 0.00043 34.1 9.4 103 525-629 91-207 (230)
421 KOG0508 Ankyrin repeat protein 77.2 1.8 3.9E-05 44.4 2.6 71 625-695 320-390 (615)
422 KOG2114 Vacuolar assembly/sort 76.8 1.4E+02 0.0031 34.0 26.6 34 218-252 365-398 (933)
423 PF12854 PPR_1: PPR repeat 75.8 6.8 0.00015 24.3 4.1 25 643-667 8-32 (34)
424 KOG2063 Vacuolar assembly/sort 74.9 54 0.0012 37.9 13.5 189 476-670 506-712 (877)
425 COG3014 Uncharacterized protei 74.8 97 0.0021 31.1 14.6 28 354-381 62-89 (449)
426 KOG2758 Translation initiation 74.7 95 0.0021 30.9 15.7 188 211-421 119-317 (432)
427 cd02681 MIT_calpain7_1 MIT: do 74.5 33 0.00071 26.2 8.1 30 645-674 9-38 (76)
428 COG3914 Spy Predicted O-linked 74.3 57 0.0012 35.3 12.5 95 606-717 73-174 (620)
429 COG2912 Uncharacterized conser 74.1 24 0.00051 34.3 9.0 83 598-693 179-261 (269)
430 KOG1920 IkappaB kinase complex 74.0 2E+02 0.0043 34.3 23.7 91 563-669 957-1053(1265)
431 PRK15180 Vi polysaccharide bio 73.9 12 0.00027 38.8 7.4 123 570-717 301-423 (831)
432 KOG3807 Predicted membrane pro 73.9 1E+02 0.0022 30.8 17.7 55 440-504 192-246 (556)
433 KOG4521 Nuclear pore complex, 73.8 2E+02 0.0043 34.2 17.1 184 433-629 921-1132(1480)
434 cd02682 MIT_AAA_Arch MIT: doma 73.5 19 0.00041 27.3 6.5 35 474-508 6-40 (75)
435 PF12854 PPR_1: PPR repeat 73.2 7.2 0.00016 24.2 3.7 27 265-291 7-33 (34)
436 KOG4422 Uncharacterized conser 73.1 1.2E+02 0.0027 31.5 29.6 142 208-377 197-340 (625)
437 cd02677 MIT_SNX15 MIT: domain 72.5 28 0.00061 26.4 7.4 50 220-270 5-54 (75)
438 PF04212 MIT: MIT (microtubule 72.2 31 0.00066 25.6 7.7 33 645-677 8-40 (69)
439 PF10373 EST1_DNA_bind: Est1 D 71.9 7.9 0.00017 38.5 5.9 62 619-696 1-62 (278)
440 PF07720 TPR_3: Tetratricopept 71.8 14 0.0003 23.4 4.7 31 685-716 2-34 (36)
441 COG3914 Spy Predicted O-linked 71.1 1.5E+02 0.0034 32.2 14.7 129 511-657 62-191 (620)
442 KOG0276 Vesicle coat complex C 71.0 16 0.00034 39.4 7.5 79 520-629 617-695 (794)
443 KOG0530 Protein farnesyltransf 69.0 1.2E+02 0.0025 29.5 16.3 171 277-486 55-233 (318)
444 PHA02537 M terminase endonucle 69.0 29 0.00063 33.0 8.3 110 274-385 92-213 (230)
445 PF13041 PPR_2: PPR repeat fam 68.4 19 0.00042 24.5 5.5 29 643-671 4-32 (50)
446 PF13041 PPR_2: PPR repeat fam 66.9 22 0.00047 24.2 5.5 29 433-461 4-32 (50)
447 KOG2758 Translation initiation 66.8 1.4E+02 0.0031 29.7 16.4 178 470-672 125-318 (432)
448 PF10938 YfdX: YfdX protein; 66.6 64 0.0014 28.7 9.7 113 223-337 4-146 (155)
449 cd02681 MIT_calpain7_1 MIT: do 66.2 53 0.0011 25.1 7.7 32 601-632 7-38 (76)
450 cd02683 MIT_1 MIT: domain cont 66.2 52 0.0011 25.2 7.8 42 645-686 9-51 (77)
451 PF07720 TPR_3: Tetratricopept 65.4 18 0.00038 22.9 4.2 29 351-379 2-32 (36)
452 TIGR02710 CRISPR-associated pr 65.3 1.8E+02 0.0038 30.3 14.3 109 563-674 135-278 (380)
453 smart00777 Mad3_BUB1_I Mad3/BU 64.7 46 0.00099 28.3 7.9 82 239-333 43-124 (125)
454 COG3014 Uncharacterized protei 64.1 1.7E+02 0.0036 29.6 15.8 28 521-548 62-89 (449)
455 PF10373 EST1_DNA_bind: Est1 D 64.0 82 0.0018 31.1 11.3 62 536-612 1-62 (278)
456 PF01535 PPR: PPR repeat; Int 63.4 12 0.00026 22.0 3.3 27 602-628 2-28 (31)
457 PRK15180 Vi polysaccharide bio 63.0 93 0.002 32.7 11.0 120 320-461 301-420 (831)
458 smart00777 Mad3_BUB1_I Mad3/BU 61.9 64 0.0014 27.4 8.2 80 493-583 45-124 (125)
459 KOG0546 HSP90 co-chaperone CPR 61.7 14 0.0003 37.1 4.8 123 563-701 227-360 (372)
460 KOG4279 Serine/threonine prote 60.8 65 0.0014 35.8 9.9 181 430-629 199-395 (1226)
461 PF10858 DUF2659: Protein of u 60.6 1.2E+02 0.0027 26.9 17.7 132 572-716 71-202 (220)
462 PF01535 PPR: PPR repeat; Int 60.6 14 0.0003 21.7 3.2 27 310-336 2-28 (31)
463 KOG0889 Histone acetyltransfer 60.5 5.9E+02 0.013 34.8 31.8 105 556-673 2734-2843(3550)
464 KOG2422 Uncharacterized conser 60.4 2.6E+02 0.0056 30.5 21.7 160 211-382 274-451 (665)
465 TIGR00756 PPR pentatricopeptid 59.2 20 0.00043 21.6 3.9 27 602-628 2-28 (35)
466 COG1747 Uncharacterized N-term 59.0 2.6E+02 0.0056 30.1 21.7 203 266-504 67-289 (711)
467 KOG0530 Protein farnesyltransf 58.9 1.8E+02 0.0039 28.3 19.4 118 364-503 57-176 (318)
468 KOG1920 IkappaB kinase complex 58.7 3.9E+02 0.0085 32.1 29.3 63 523-585 958-1026(1265)
469 PRK09169 hypothetical protein; 58.6 5.3E+02 0.012 33.6 25.6 26 473-498 623-648 (2316)
470 KOG0260 RNA polymerase II, lar 57.2 1.2E+02 0.0026 35.8 11.5 125 20-183 1474-1604(1605)
471 cd02679 MIT_spastin MIT: domai 57.0 63 0.0014 24.9 6.7 32 604-635 12-43 (79)
472 PF09205 DUF1955: Domain of un 56.5 1.1E+02 0.0024 26.3 8.4 53 610-670 96-148 (161)
473 PRK12798 chemotaxis protein; R 56.2 2.6E+02 0.0057 29.3 22.9 32 431-462 256-287 (421)
474 TIGR00756 PPR pentatricopeptid 55.8 25 0.00054 21.1 3.9 27 311-337 3-29 (35)
475 KOG2582 COP9 signalosome, subu 55.7 2.4E+02 0.0053 28.8 12.8 109 307-419 101-210 (422)
476 cd02680 MIT_calpain7_2 MIT: do 55.4 74 0.0016 24.2 6.8 34 220-254 5-38 (75)
477 cd02678 MIT_VPS4 MIT: domain c 55.2 90 0.002 23.6 8.0 41 646-686 10-51 (75)
478 KOG0508 Ankyrin repeat protein 54.5 30 0.00065 36.1 5.9 135 264-403 244-390 (615)
479 COG2912 Uncharacterized conser 54.2 16 0.00035 35.4 3.9 69 644-721 183-252 (269)
480 PF13812 PPR_3: Pentatricopept 53.8 33 0.00073 20.6 4.2 27 602-628 3-29 (34)
481 KOG3024 Uncharacterized conser 53.5 2.3E+02 0.005 27.8 12.4 134 569-708 17-150 (312)
482 KOG0546 HSP90 co-chaperone CPR 53.5 21 0.00045 35.9 4.6 99 397-503 227-338 (372)
483 smart00745 MIT Microtubule Int 53.3 91 0.002 23.6 7.4 29 480-508 14-42 (77)
484 PF07163 Pex26: Pex26 protein; 52.4 2.4E+02 0.0052 27.7 13.6 140 310-456 37-182 (309)
485 PF13812 PPR_3: Pentatricopept 50.8 39 0.00085 20.3 4.2 27 644-670 3-29 (34)
486 PF10938 YfdX: YfdX protein; 50.7 34 0.00074 30.4 5.2 109 520-628 5-145 (155)
487 KOG2063 Vacuolar assembly/sort 50.6 3.4E+02 0.0073 31.8 13.9 182 311-502 507-712 (877)
488 cd02679 MIT_spastin MIT: domai 50.5 91 0.002 24.0 6.7 32 520-551 11-42 (79)
489 KOG2034 Vacuolar sorting prote 50.5 4.6E+02 0.0099 30.4 26.5 57 313-380 363-419 (911)
490 COG4455 ImpE Protein of avirul 48.1 1.2E+02 0.0027 28.5 8.2 55 608-670 9-63 (273)
491 PF12309 KBP_C: KIF-1 binding 48.0 3.4E+02 0.0075 28.3 16.2 144 408-551 147-343 (371)
492 TIGR02710 CRISPR-associated pr 46.7 3.6E+02 0.0078 28.1 14.4 58 271-332 136-195 (380)
493 cd02656 MIT MIT: domain contai 45.7 1.3E+02 0.0028 22.7 8.2 31 647-677 11-41 (75)
494 KOG2034 Vacuolar sorting prote 45.1 5.5E+02 0.012 29.8 23.3 59 396-463 362-420 (911)
495 smart00386 HAT HAT (Half-A-TPR 44.8 59 0.0013 19.0 4.3 29 614-650 1-29 (33)
496 KOG4422 Uncharacterized conser 43.3 4.2E+02 0.009 27.9 34.0 102 393-495 274-377 (625)
497 COG3899 Predicted ATPase [Gene 42.8 6.4E+02 0.014 29.9 36.9 260 220-503 438-706 (849)
498 COG4455 ImpE Protein of avirul 41.6 3.1E+02 0.0068 25.9 11.2 55 441-503 10-64 (273)
499 KOG4279 Serine/threonine prote 41.6 1.2E+02 0.0027 33.8 8.3 183 515-717 199-398 (1226)
500 cd02680 MIT_calpain7_2 MIT: do 41.3 1.2E+02 0.0027 23.0 6.1 22 276-297 17-38 (75)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-45 Score=363.58 Aligned_cols=374 Identities=21% Similarity=0.306 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Q 004848 264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG 343 (727)
Q Consensus 264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 343 (727)
.+++|.++|.++...|++++|+.+|+.++++. + ..+.+|.++|.++...|+.+.|..+|..++++
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-----p----~fida~inla~al~~~~~~~~a~~~~~~alql------ 179 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-----P----KFIDAYINLAAALVTQGDLELAVQCFFEALQL------ 179 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-----c----hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc------
Confidence 34444444555444555555555554444443 1 12233444455555455555555555544444
Q ss_pred CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI 423 (727)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 423 (727)
+|....+...+|.++...|+..+|..+|.+|+...+.. +.+|.+||.++...|+...|+.+|++|+.
T Consensus 180 --nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f--------AiawsnLg~~f~~~Gei~~aiq~y~eAvk--- 246 (966)
T KOG4626|consen 180 --NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCF--------AIAWSNLGCVFNAQGEIWLAIQHYEEAVK--- 246 (966)
T ss_pred --CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCce--------eeeehhcchHHhhcchHHHHHHHHHHhhc---
Confidence 44444444444444444455555555554444444322 23344444444444555555554444432
Q ss_pred hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (727)
Q Consensus 424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (727)
.+|....+|.+||.+|...+.|+.|+.+|.+|+.+ .|..+.++.++|.+|+.+|..+-|+..|++++++
T Consensus 247 ---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~ 315 (966)
T KOG4626|consen 247 ---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL 315 (966)
T ss_pred ---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc
Confidence 24444444445555554455555555555444444 4444444445555555555555555555544444
Q ss_pred HhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004848 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583 (727)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 583 (727)
.|.+..++++||..+...|+..+|..+|.+++.+.+.. +.+.++||.+|..+|.+++|..+|.+
T Consensus 316 ---------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h-------adam~NLgni~~E~~~~e~A~~ly~~ 379 (966)
T KOG4626|consen 316 ---------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH-------ADAMNNLGNIYREQGKIEEATRLYLK 379 (966)
T ss_pred ---------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhccchHHHHHHHH
Confidence 33334444445554444455555555555544444333 34444445555555555555555544
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHH
Q 004848 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663 (727)
Q Consensus 584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 663 (727)
++++. +..+.+.++||.+|.++|++++|+.+|++|+.+ .|..++++.++|..|..+|+...|+.
T Consensus 380 al~v~--------p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 380 ALEVF--------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred HHhhC--------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHH
Confidence 44442 223444444455555555555555555555444 44444445555555555555555555
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 664 ~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.|.+|+.+ +|..++++.+||.+|...|+..+|+ ..|+++|+++|+
T Consensus 444 ~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI-~sY~~aLklkPD 488 (966)
T KOG4626|consen 444 CYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAI-QSYRTALKLKPD 488 (966)
T ss_pred HHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHH-HHHHHHHccCCC
Confidence 55544443 3444445555555555555555554 445555544444
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=9.6e-44 Score=353.47 Aligned_cols=420 Identities=20% Similarity=0.255 Sum_probs=386.3
Q ss_pred ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHH
Q 004848 208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV 287 (727)
Q Consensus 208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 287 (727)
.....+...+|..++++-.+|+.+-..|+ +++|+.+|+.++++- |..+++|.++|.++...|+.+.|...
T Consensus 103 a~~~~a~r~~~q~ae~ysn~aN~~kerg~-~~~al~~y~~aiel~---------p~fida~inla~al~~~~~~~~a~~~ 172 (966)
T KOG4626|consen 103 AGSLLAIRKNPQGAEAYSNLANILKERGQ-LQDALALYRAAIELK---------PKFIDAYINLAAALVTQGDLELAVQC 172 (966)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHHHhch-HHHHHHHHHHHHhcC---------chhhHHHhhHHHHHHhcCCCcccHHH
Confidence 34455677889999999999999999998 999999999999863 67799999999999999999999999
Q ss_pred HHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHH
Q 004848 288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFS 367 (727)
Q Consensus 288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 367 (727)
|..++++.+ . .+.+...+|..+-..|+..+|..+|.+|++. .|..+.+|.+||.++..+|+..
T Consensus 173 ~~~alqlnP-----~----l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--------qp~fAiawsnLg~~f~~~Gei~ 235 (966)
T KOG4626|consen 173 FFEALQLNP-----D----LYCARSDLGNLLKAEGRLEEAKACYLKAIET--------QPCFAIAWSNLGCVFNAQGEIW 235 (966)
T ss_pred HHHHHhcCc-----c----hhhhhcchhHHHHhhcccchhHHHHHHHHhh--------CCceeeeehhcchHHhhcchHH
Confidence 999999962 1 2335778999999999999999999999999 7999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC
Q 004848 368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR 447 (727)
Q Consensus 368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 447 (727)
.|+..|++|+.+.|... .+|.+||.+|...+.|++|+..|.+|+. ..|..+.++.++|.+|+.+|.
T Consensus 236 ~aiq~y~eAvkldP~f~--------dAYiNLGnV~ke~~~~d~Avs~Y~rAl~------lrpn~A~a~gNla~iYyeqG~ 301 (966)
T KOG4626|consen 236 LAIQHYEEAVKLDPNFL--------DAYINLGNVYKEARIFDRAVSCYLRALN------LRPNHAVAHGNLACIYYEQGL 301 (966)
T ss_pred HHHHHHHHhhcCCCcch--------HHHhhHHHHHHHHhcchHHHHHHHHHHh------cCCcchhhccceEEEEecccc
Confidence 99999999999998775 4699999999999999999999999975 578889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHH
Q 004848 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY 527 (727)
Q Consensus 448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 527 (727)
.+-|+..|++++++ .|....++.+||..+-..|+..+|..+|.+++.+ .+..+.++++||.+|
T Consensus 302 ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l---------~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 302 LDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL---------CPNHADAMNNLGNIY 364 (966)
T ss_pred HHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh---------CCccHHHHHHHHHHH
Confidence 99999999999998 8999999999999999999999999999999999 445578999999999
Q ss_pred HhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 004848 528 ESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG 607 (727)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 607 (727)
..+|.+++|..+|.++++..+.. +.+..+||.+|..+|++++|+.+|++++.+ .+.++.++.++|
T Consensus 365 ~E~~~~e~A~~ly~~al~v~p~~-------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmG 429 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALEVFPEF-------AAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMG 429 (966)
T ss_pred HHhccchHHHHHHHHHHhhChhh-------hhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcc
Confidence 99999999999999999998776 678999999999999999999999999997 466899999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004848 608 LACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK 687 (727)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~ 687 (727)
..|..+|+.+.|+.+|.+|+.+ +|..++++.+||.+|...|+..+|+..|+.++.+ .|+.++++
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--------kPDfpdA~ 493 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--------KPDFPDAY 493 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--------CCCCchhh
Confidence 9999999999999999999999 9999999999999999999999999999999987 68888999
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 688 RRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 688 ~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.+|+.++.-..++.+-- +.+.++.++-.+
T Consensus 494 cNllh~lq~vcdw~D~d-~~~~kl~sivrd 522 (966)
T KOG4626|consen 494 CNLLHCLQIVCDWTDYD-KRMKKLVSIVRD 522 (966)
T ss_pred hHHHHHHHHHhcccchH-HHHHHHHHHHHH
Confidence 99999998888877766 666776666554
No 3
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=3.4e-31 Score=273.64 Aligned_cols=421 Identities=40% Similarity=0.519 Sum_probs=361.1
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccch
Q 004848 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296 (727)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 296 (727)
.+.....++..++.....+..+.+.+....++++..++.... .....+......++..+.+++|....+.......
T Consensus 84 ~~~~~~~~~a~~r~~~~e~~~~~~el~~~~r~~k~~e~~~~~----~~~~~~hl~~~~~~~~~~l~ea~~~~e~~~~~~~ 159 (508)
T KOG1840|consen 84 SEAGGQKLLAQVRRLCQEGEWLEDELALTQRALKQSERSVAQ----LEEEKLHLLAAIQALLLQLDEAEQGQEQAAVTPV 159 (508)
T ss_pred cchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHhhhhhcccccccccch
Confidence 345566778888888888877888888888888887765311 1112466677777888889999888887765421
Q ss_pred hccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004848 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA 376 (727)
Q Consensus 297 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 376 (727)
...++..+...-+.+.....+...+.+..+..+..+|....+...++..|..+|+|+.|+..++++
T Consensus 160 --------------~d~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~A 225 (508)
T KOG1840|consen 160 --------------KDSLADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQA 225 (508)
T ss_pred --------------hHHHHhhccccccccccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 111333344443444667777777777777788889999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004848 377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456 (727)
Q Consensus 377 l~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 456 (727)
+++..+..+ -.++.+......+|.+|..++++.+|+..|+
T Consensus 226 l~~l~k~~G----------------------------------------~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~ 265 (508)
T KOG1840|consen 226 LRILEKTSG----------------------------------------LKHLVVASMLNILALVYRSLGKYDEAVNLYE 265 (508)
T ss_pred HHHHHHccC----------------------------------------ccCHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 988544332 1345555666689999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHH
Q 004848 457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA 536 (727)
Q Consensus 457 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 536 (727)
+|+.+.+...|+++|..+.++.+||.+|...|+|++|..++++|+++.++. .+..++.+...+..++.++..++++++|
T Consensus 266 ~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~-~~~~~~~v~~~l~~~~~~~~~~~~~Eea 344 (508)
T KOG1840|consen 266 EALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL-LGASHPEVAAQLSELAAILQSMNEYEEA 344 (508)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHHhcchhHH
Confidence 999999999999999999999999999999999999999999999999994 4788999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCC
Q 004848 537 IKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS 615 (727)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 615 (727)
..+++++++++.+.++... .++.++.+||.+|..+|+|.+|.++|++|+.+.++..+.........+++||..|.+.++
T Consensus 345 ~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~ 424 (508)
T KOG1840|consen 345 KKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK 424 (508)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence 9999999999998888877 899999999999999999999999999999999999888788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004848 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK 695 (727)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~ 695 (727)
+.+|..+|.++..+. +..|+++|+....|.+||.+|..+|++++|+++.++++..++..+|..+|........++....
T Consensus 425 ~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLADLSK 503 (508)
T ss_pred cchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999999998888777776654
Q ss_pred Hh
Q 004848 696 EA 697 (727)
Q Consensus 696 ~~ 697 (727)
..
T Consensus 504 ~~ 505 (508)
T KOG1840|consen 504 EA 505 (508)
T ss_pred Hh
Confidence 43
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=6e-32 Score=301.53 Aligned_cols=421 Identities=17% Similarity=0.155 Sum_probs=317.6
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhcc
Q 004848 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 299 (727)
.+..+..+|..++..|+ |++|+.+|++|+.+. |+ ...+.++|.+|..+|++++|+..+++++++.
T Consensus 126 ~a~~~k~~G~~~~~~~~-~~~Ai~~y~~al~~~-------p~---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~---- 190 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKD-FNKAIKLYSKAIECK-------PD---PVYYSNRAACHNALGDWEKVVEDTTAALELD---- 190 (615)
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC-------Cc---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC----
Confidence 46678899999999997 999999999999863 22 3468999999999999999999999999885
Q ss_pred CccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004848 300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379 (727)
Q Consensus 300 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 379 (727)
++. ..+++.+|.+|..+|++++|+..|..++... .......... +...+ . ..+...+..++..
T Consensus 191 -p~~----~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~-----~~~~~~~~~~--~~~~l-~----~~a~~~~~~~l~~ 253 (615)
T TIGR00990 191 -PDY----SKALNRRANAYDGLGKYADALLDLTASCIID-----GFRNEQSAQA--VERLL-K----KFAESKAKEILET 253 (615)
T ss_pred -CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccHHHHHH--HHHHH-H----HHHHHHHHHHHhc
Confidence 333 3459999999999999999999997765541 0011110000 00000 0 1111111111111
Q ss_pred HHhcCCC-------------------------CCHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHhCCCChhH
Q 004848 380 HKDNGSP-------------------------ASLEEAADRRLMGLIC---ETKGDHEAALEHLVLASMTMIANDQDAEV 431 (727)
Q Consensus 380 ~~~~~~~-------------------------~~~~~a~~~~~l~~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 431 (727)
.+..... ........+..++..+ ...++|++|+..|++++... ...+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~---~~~~~~ 330 (615)
T TIGR00990 254 KPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG---KLGEKE 330 (615)
T ss_pred CCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC---CCChhh
Confidence 1110000 0000011233334332 23478999999999887532 235778
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCC
Q 004848 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (727)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (727)
+.++..+|.++..+|++++|+..|++++.+ .|....++..+|.++...|++++|+.+|++++++
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-------- 394 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-------- 394 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 889999999999999999999999999998 7888899999999999999999999999999988
Q ss_pred ChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004848 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591 (727)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (727)
.|....++..+|.++...|++++|+.+|++++.+.+.. ...+..+|.++..+|++++|+..|++++...
T Consensus 395 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--- 463 (615)
T TIGR00990 395 -NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-------IFSHIQLGVTQYKEGSIASSMATFRRCKKNF--- 463 (615)
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---
Confidence 33446789999999999999999999999999986654 4678899999999999999999999999862
Q ss_pred CCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 592 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
+....++..+|.++...|++++|+..|++++.+...... .+......+...+.++...|++++|+.++++++.+
T Consensus 464 -----P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~-~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 464 -----PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP-MYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred -----CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc-ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 224578899999999999999999999999998222100 01111222222333445579999999999999986
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 672 REEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 672 ~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+|+...++..||.++..+|++++|+ .+|++++++.++
T Consensus 538 --------~p~~~~a~~~la~~~~~~g~~~eAi-~~~e~A~~l~~~ 574 (615)
T TIGR00990 538 --------DPECDIAVATMAQLLLQQGDVDEAL-KLFERAAELART 574 (615)
T ss_pred --------CCCcHHHHHHHHHHHHHccCHHHHH-HHHHHHHHHhcc
Confidence 5777788999999999999999999 999999998774
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-30 Score=309.56 Aligned_cols=421 Identities=18% Similarity=0.177 Sum_probs=262.4
Q ss_pred cccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHH
Q 004848 205 HKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEA 284 (727)
Q Consensus 205 ~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 284 (727)
.+...+.......|.....+..+|..+...|+ +++|+.+|++++... |....++..+|.++...|++++|
T Consensus 449 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~---------~~~~~~~~~la~~~~~~g~~~~A 518 (899)
T TIGR02917 449 KALAAAKKLEKKQPDNASLHNLLGAIYLGKGD-LAKAREAFEKALSIE---------PDFFPAAANLARIDIQEGNPDDA 518 (899)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhC---------CCcHHHHHHHHHHHHHCCCHHHH
Confidence 33333334444455566666666666666665 667777666666542 22344566666666666777777
Q ss_pred HHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc
Q 004848 285 IPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL 364 (727)
Q Consensus 285 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 364 (727)
+..|++++... +.+ ..++..++.++...|++++|+.+|++++.. +|.....+..++.++...|
T Consensus 519 ~~~~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~ 581 (899)
T TIGR02917 519 IQRFEKVLTID-----PKN----LRAILALAGLYLRTGNEEEAVAWLEKAAEL--------NPQEIEPALALAQYYLGKG 581 (899)
T ss_pred HHHHHHHHHhC-----cCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchhHHHHHHHHHHHCC
Confidence 77666666543 222 223556666666666666666666666655 4455556666666666666
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 004848 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS 444 (727)
Q Consensus 365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 444 (727)
++++|+.++++++...+.. ...+..+|.++...|++++|+..|++++.. .+....++..+|.++..
T Consensus 582 ~~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 582 QLKKALAILNEAADAAPDS--------PEAWLMLGRAQLAAGDLNKAVSSFKKLLAL------QPDSALALLLLADAYAV 647 (899)
T ss_pred CHHHHHHHHHHHHHcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHH
Confidence 6666666666665543322 234666677777777777777777666542 23334556666777777
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHH
Q 004848 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS 524 (727)
Q Consensus 445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la 524 (727)
.|++++|+.+|++++.. .|....++..++.++...|++++|+.+++.+.... +.....+..+|
T Consensus 648 ~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~~ 710 (899)
T TIGR02917 648 MKNYAKAITSLKRALEL--------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH---------PKAALGFELEG 710 (899)
T ss_pred cCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------cCChHHHHHHH
Confidence 77777777777766665 45555566666666666666666666666555441 22234566677
Q ss_pred HHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 004848 525 SIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALN 604 (727)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 604 (727)
.++...|++++|+..|++++...+.. ..+..++.++...|++++|...+++++... +....++.
T Consensus 711 ~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------~~~~~~~~ 774 (899)
T TIGR02917 711 DLYLRQKDYPAAIQAYRKALKRAPSS--------QNAIKLHRALLASGNTAEAVKTLEAWLKTH--------PNDAVLRT 774 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCc--------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHH
Confidence 77777777777777777776654322 344556677777777777777776666531 11245666
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004848 605 QMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVD 684 (727)
Q Consensus 605 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~ 684 (727)
.+|.++...|++++|+.+|+++++. +|....++..++.++...|+ .+|+.++++++.+ .|+..
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--------~~~~~ 837 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--------APNIP 837 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--------CCCCc
Confidence 7777777777777777777777766 56666667777777777777 6677777777654 34445
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 685 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 685 ~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
..+..+|.++...|++++|. ..|+++++.+|.
T Consensus 838 ~~~~~~~~~~~~~g~~~~A~-~~~~~a~~~~~~ 869 (899)
T TIGR02917 838 AILDTLGWLLVEKGEADRAL-PLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence 55666777777777777777 777777776664
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.4e-30 Score=308.69 Aligned_cols=429 Identities=19% Similarity=0.219 Sum_probs=371.7
Q ss_pred CCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004848 193 GATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIA 272 (727)
Q Consensus 193 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la 272 (727)
.+..+...+++..+.+.+.+....+|.....++.+|..+...|+ +++|+.+|++++... |....++..++
T Consensus 471 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~---------~~~~~~~~~l~ 540 (899)
T TIGR02917 471 LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN-PDDAIQRFEKVLTID---------PKNLRAILALA 540 (899)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC---------cCcHHHHHHHH
Confidence 34455666777777777777777889999999999999999997 999999999998753 33466788999
Q ss_pred HHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Q 004848 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET 352 (727)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 352 (727)
.++...|++++|+.+|++++... +.. ...+..++.+|...|++++|+..+++++.. .|....+
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~ 603 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-----PQE----IEPALALAQYYLGKGQLKKALAILNEAADA--------APDSPEA 603 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-----ccc----hhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHH
Confidence 99999999999999999998764 222 234788999999999999999999999877 5777789
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHH
Q 004848 353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA 432 (727)
Q Consensus 353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 432 (727)
+..+|.++...|++++|+.+|++++...+... .++..+|.++...|++++|+.+|++++.. .|...
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~ 669 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA--------LALLLLADAYAVMKNYAKAITSLKRALEL------KPDNT 669 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCH
Confidence 99999999999999999999999998765432 46889999999999999999999998753 45556
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCC
Q 004848 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP 512 (727)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (727)
.++..++.++...|++++|+..++.+... .|.....+..+|.++...|++++|+..|++++.....
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~------ 735 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQ--------HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS------ 735 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------
Confidence 78899999999999999999999988776 5667788899999999999999999999999988321
Q ss_pred hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004848 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (727)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (727)
. ..+..++.++...|++++|+..+++++...+.. ..++..+|.+|...|++++|+.+|+++++..
T Consensus 736 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---- 800 (899)
T TIGR02917 736 S----QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND-------AVLRTALAELYLAQKDYDKAIKHYRTVVKKA---- 800 (899)
T ss_pred c----hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC----
Confidence 1 467789999999999999999999999875443 4678899999999999999999999999862
Q ss_pred CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848 593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (727)
Q Consensus 593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (727)
+....++..+|.++...|+ .+|+.++++++.+ .|+...++..+|.++...|++++|+.+|+++++.
T Consensus 801 ----p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~- 866 (899)
T TIGR02917 801 ----PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--------APNIPAILDTLGWLLVEKGEADRALPLLRKAVNI- 866 (899)
T ss_pred ----CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence 2245788999999999999 8899999999998 6777778899999999999999999999999986
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 004848 673 EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (727)
Q Consensus 673 ~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (727)
.|....++..++.++.+.|++++|. +.++++++
T Consensus 867 -------~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 899 (899)
T TIGR02917 867 -------APEAAAIRYHLALALLATGRKAEAR-KELDKLLN 899 (899)
T ss_pred -------CCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHhC
Confidence 5667889999999999999999999 99998863
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=8.4e-30 Score=302.35 Aligned_cols=454 Identities=15% Similarity=0.059 Sum_probs=344.7
Q ss_pred CCccccccccccccccccccCCCCCChHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004848 194 ATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLL-KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIA 272 (727)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~-~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la 272 (727)
+..+...+++.+|++.+..+...+|.....-. .........|+ +++|+..++++++.. |....++..+|
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~-~~~A~~~L~~ll~~~---------P~~~~~~~~LA 188 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQ-RPEAINQLQRLNADY---------PGNTGLRNTLA 188 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCcc-HHHHHHHHHHHHHhC---------CCCHHHHHHHH
Confidence 44566778888888777777777776653222 22222334576 999999999998864 44466788999
Q ss_pred HHHHHcCChhHHHHHHHHhcccchhc-------------cC----------------ccchH-HHH-H------------
Q 004848 273 AIYCSLGQYNEAIPVLEQSIEIPVIE-------------EG----------------QEHAL-AKF-A------------ 309 (727)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~----------------~~~~~-~~~-~------------ 309 (727)
.+++..|++++|+..|++++...... .. +.... ... .
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999986542100 00 00000 000 0
Q ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004848 310 --GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387 (727)
Q Consensus 310 --~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 387 (727)
....+|.++...|++++|+..|+++++. +|....++..+|.++...|++++|+.+|+++++..+......
T Consensus 269 ~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~ 340 (1157)
T PRK11447 269 AFRARAQGLAAVDSGQGGKAIPELQQAVRA--------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD 340 (1157)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh
Confidence 0124488899999999999999999998 788899999999999999999999999999999877654221
Q ss_pred CHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848 388 SLE------EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (727)
Q Consensus 388 ~~~------~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (727)
... .......+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++++|+.+|++++++
T Consensus 341 ~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 341 KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 100 1122345688899999999999999999864 4455678889999999999999999999999976
Q ss_pred HHHhcCCCChhHHHH------------------------------------------HHHHHHHHHHcCChHHHHHHHHH
Q 004848 462 FKTNKGENHPAVASV------------------------------------------FVRLADMYNRTGKLRESKSYCEN 499 (727)
Q Consensus 462 ~~~~~~~~~~~~~~~------------------------------------------~~~la~~~~~~g~~~~A~~~~~~ 499 (727)
.|....+ +..+|.++...|++++|+.+|++
T Consensus 415 --------~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~ 486 (1157)
T PRK11447 415 --------DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQ 486 (1157)
T ss_pred --------CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2322222 33456667788999999999999
Q ss_pred HHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Q 004848 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD 579 (727)
Q Consensus 500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 579 (727)
++++ .|....++..+|.+|...|++++|+..+++++...+.. ...++.++..+...+++++|+.
T Consensus 487 Al~~---------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~-------~~~~~a~al~l~~~~~~~~Al~ 550 (1157)
T PRK11447 487 RLAL---------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND-------PEQVYAYGLYLSGSDRDRAALA 550 (1157)
T ss_pred HHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHhCCCHHHHHH
Confidence 9988 33446678899999999999999999999998765543 2445556666666677777766
Q ss_pred HHHHHH-------------------------------------HHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHH
Q 004848 580 SFKNAI-------------------------------------SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL 622 (727)
Q Consensus 580 ~~~~al-------------------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 622 (727)
+++++. .+++. . +.....+..+|.++...|++++|+.+
T Consensus 551 ~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~----~-p~~~~~~~~La~~~~~~g~~~~A~~~ 625 (1157)
T PRK11447 551 HLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ----Q-PPSTRIDLTLADWAQQRGDYAAARAA 625 (1157)
T ss_pred HHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----C-CCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 655421 11111 1 11235678899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhH
Q 004848 623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRS 702 (727)
Q Consensus 623 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~ 702 (727)
|++++.. +|+...++..++.+|...|++++|+..|++++.. .|+...++..+|.++...|++++
T Consensus 626 y~~al~~--------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~e 689 (1157)
T PRK11447 626 YQRVLTR--------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTAA 689 (1157)
T ss_pred HHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHHH
Confidence 9999998 8888899999999999999999999999988754 56777888899999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 004848 703 RKAQSLETLLDANSR 717 (727)
Q Consensus 703 A~~~~l~~al~~~p~ 717 (727)
|. ..|++++...|.
T Consensus 690 A~-~~~~~al~~~~~ 703 (1157)
T PRK11447 690 AQ-RTFNRLIPQAKS 703 (1157)
T ss_pred HH-HHHHHHhhhCcc
Confidence 99 999999988764
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.4e-29 Score=298.41 Aligned_cols=448 Identities=13% Similarity=0.111 Sum_probs=343.6
Q ss_pred ccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-----------HHhcC-----------
Q 004848 200 RKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSF-----------EIGAN----------- 257 (727)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~-----------~~~~~----------- 257 (727)
.++..++++.+..+...+|+...+++.+|..++..|+ +++|+..+++++... +.+..
T Consensus 160 ~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~-~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l 238 (1157)
T PRK11447 160 PAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR-RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAAL 238 (1157)
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHH
Confidence 4566677788888999999999999999999999997 999999999875421 11000
Q ss_pred -----CCCC-HHHHH-----------------HHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHH
Q 004848 258 -----GKPS-LELVM-----------------CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQL 314 (727)
Q Consensus 258 -----~~~~-~~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 314 (727)
..+. +.... ....+|.++...|++++|+..|++++... ++++ .++..+
T Consensus 239 ~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-----P~~~----~a~~~L 309 (1157)
T PRK11447 239 QKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-----PKDS----EALGAL 309 (1157)
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCH----HHHHHH
Confidence 0000 00000 01234888999999999999999999885 4443 358999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCch-----------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004848 315 GDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR-----------VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383 (727)
Q Consensus 315 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 383 (727)
|.+|..+|++++|+.+|+++++..+. .+. .......+|.++...|++++|+.+|++++.+.|..
T Consensus 310 g~~~~~~g~~~eA~~~l~~Al~~~p~-----~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~ 384 (1157)
T PRK11447 310 GQAYSQQGDRARAVAQFEKALALDPH-----SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD 384 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-----ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999987321 111 11233456888999999999999999999987644
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------------Ch----------------------
Q 004848 384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ------------DA---------------------- 429 (727)
Q Consensus 384 ~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~---------------------- 429 (727)
..++..+|.++...|++++|+.+|++++.+...... .+
T Consensus 385 --------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 385 --------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred --------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 256889999999999999999999999754211100 00
Q ss_pred --hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004848 430 --EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (727)
Q Consensus 430 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (727)
.....+..+|.++...|++++|+..|++++++ .|....+++.+|.+|...|++++|+..+++++...
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--- 525 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--- 525 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---
Confidence 00122345677888899999999999999998 78888999999999999999999999999998762
Q ss_pred CCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHH-------------------------------------HHHHhC
Q 004848 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL-------------------------------------KIYNDA 550 (727)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------------------------------------~~~~~~ 550 (727)
|.....++.++.++...+++++|+.+++++. .+....
T Consensus 526 ------P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~ 599 (1157)
T PRK11447 526 ------PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ 599 (1157)
T ss_pred ------CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 2223445556666666666666666655421 111111
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004848 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (727)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 630 (727)
+ ....++..+|.++...|++++|+.+|++++... +....++..++.++...|++++|+.+|++++..
T Consensus 600 p----~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--------P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~- 666 (1157)
T PRK11447 600 P----PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--------PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT- 666 (1157)
T ss_pred C----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 1 123456789999999999999999999999862 224578999999999999999999999998877
Q ss_pred HHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHHHHhCChhHHHHHH
Q 004848 631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP---DVDDEKRRLAELLKEAGRVRSRKAQS 707 (727)
Q Consensus 631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p---~~~~~~~~La~~~~~~g~~~~A~~~~ 707 (727)
.|+...++..+|.++..+|++++|+.+|++++... +.+| ..+..+..+|.++...|++++|+ ..
T Consensus 667 -------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~-~~ 733 (1157)
T PRK11447 667 -------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA-----KSQPPSMESALVLRDAARFEAQTGQPQQAL-ET 733 (1157)
T ss_pred -------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC-----ccCCcchhhHHHHHHHHHHHHHcCCHHHHH-HH
Confidence 77778889999999999999999999999998753 1222 24567778899999999999999 99
Q ss_pred HHHHHH
Q 004848 708 LETLLD 713 (727)
Q Consensus 708 l~~al~ 713 (727)
|++++.
T Consensus 734 y~~Al~ 739 (1157)
T PRK11447 734 YKDAMV 739 (1157)
T ss_pred HHHHHh
Confidence 999986
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.98 E-value=2.8e-29 Score=280.14 Aligned_cols=414 Identities=18% Similarity=0.135 Sum_probs=314.5
Q ss_pred ccCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004848 191 NAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV 270 (727)
Q Consensus 191 ~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~ 270 (727)
...+..+...+++..|+..+..+....|+ ...+..+|.++...|+ +++|++.+.+|+++. |+...++..
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~-~~~Ai~~~~~al~l~---------p~~~~a~~~ 199 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGD-WEKVVEDTTAALELD---------PDYSKALNR 199 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcC---------CCCHHHHHH
Confidence 34555667778899999888888888886 6789999999999998 999999999999862 456788999
Q ss_pred HHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-----------
Q 004848 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK----------- 339 (727)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----------- 339 (727)
+|.+|..+|++++|+..|..++.+.. ...... ...+. ..+. ..+...+..+++...
T Consensus 200 ~a~a~~~lg~~~eA~~~~~~~~~~~~----~~~~~~-~~~~~---~~l~-----~~a~~~~~~~l~~~~~~~~~~~~~~~ 266 (615)
T TIGR00990 200 RANAYDGLGKYADALLDLTASCIIDG----FRNEQS-AQAVE---RLLK-----KFAESKAKEILETKPENLPSVTFVGN 266 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC----CccHHH-HHHHH---HHHH-----HHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 99999999999999999987765431 111100 00000 0000 011111111111000
Q ss_pred --HHh------------CCCCchHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004848 340 --QVL------------GETDPRVGETCRYLAEAHV---QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC 402 (727)
Q Consensus 340 --~~~------------~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~ 402 (727)
..+ ...++.....+..++..+. ..++|++|+.+|++++.... ..+..+.++..+|.++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~-----~~~~~a~a~~~lg~~~ 341 (615)
T TIGR00990 267 YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK-----LGEKEAIALNLRGTFK 341 (615)
T ss_pred HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHH
Confidence 000 0002223333444444332 34689999999999997651 1233457799999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004848 403 ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD 482 (727)
Q Consensus 403 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 482 (727)
...|++++|+..|++++.+ .|.....+..+|.++...|++++|+.+|++++++ +|....++..+|.
T Consensus 342 ~~~g~~~eA~~~~~kal~l------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~ 407 (615)
T TIGR00990 342 CLKGKHLEALADLSKSIEL------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQ 407 (615)
T ss_pred HHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 9999999999999999863 5667788999999999999999999999999988 6788899999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHH
Q 004848 483 MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA 562 (727)
Q Consensus 483 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 562 (727)
++...|++++|+.+|++++.+ .|.....+..+|.++..+|++++|+..|++++...+.. ..++.
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l---------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~-------~~~~~ 471 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDL---------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA-------PDVYN 471 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHc---------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------hHHHH
Confidence 999999999999999999998 34456778999999999999999999999999886654 46788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHH
Q 004848 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL 642 (727)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 642 (727)
.+|.++..+|++++|+.+|++++.+.+...... ......+...+.++...|++++|+.++++++.+ +|+..
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~-~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--------~p~~~ 542 (615)
T TIGR00990 472 YYGELLLDQNKFDEAIEKFDTAIELEKETKPMY-MNVLPLINKALALFQWKQDFIEAENLCEKALII--------DPECD 542 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCcccccc-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcH
Confidence 999999999999999999999998754322111 111222233334444579999999999999998 78888
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (727)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (727)
.++..+|.++..+|++++|+.+|++++++.
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999885
No 10
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.5e-28 Score=258.76 Aligned_cols=452 Identities=17% Similarity=0.160 Sum_probs=362.9
Q ss_pred ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHH
Q 004848 208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV 287 (727)
Q Consensus 208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 287 (727)
..+..+-..+|.++.++..++..++..|+ |+.+..++..|+... ...+..+..++.+|.+|..+|+|++|..+
T Consensus 257 ~ll~~ay~~n~~nP~~l~~LAn~fyfK~d-y~~v~~la~~ai~~t------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 257 QLLQRAYKENNENPVALNHLANHFYFKKD-YERVWHLAEHAIKNT------ENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHhhcCCCcHHHHHHHHHHhhccc-HHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 45556667788999999999999999997 999999999998763 23356788899999999999999999999
Q ss_pred HHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc---
Q 004848 288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL--- 364 (727)
Q Consensus 288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--- 364 (727)
|.+++... +++ .+-.++.||.+|...|+++.|+.+|++++.. .|+...+...||.+|...+
T Consensus 330 Y~~s~k~~-----~d~---~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~ 393 (1018)
T KOG2002|consen 330 YMESLKAD-----NDN---FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQ 393 (1018)
T ss_pred HHHHHccC-----CCC---ccccccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhh
Confidence 99999885 222 1223889999999999999999999999998 6889999999999998876
Q ss_pred -CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 004848 365 -QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL 443 (727)
Q Consensus 365 -~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 443 (727)
..+.|..++.+++...+.. ..+|..++.++....-+.. +.+|..|+.++...... .-...++++|..++
T Consensus 394 ~~~d~a~~~l~K~~~~~~~d--------~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 394 EKRDKASNVLGKVLEQTPVD--------SEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQ-IPPEVLNNVASLHF 463 (1018)
T ss_pred HHHHHHHHHHHHHHhccccc--------HHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHH
Confidence 5678888888888877544 3679999998877665555 99999999777766554 55678999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 004848 444 SLSRYDEAGFAYQKALTAFKTNKGENH--PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (727)
Q Consensus 444 ~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (727)
..|++.+|..+|..|+..+......+. .......+++|.++...++++.|...|...+.. +|....++.
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---------hp~YId~yl 534 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE---------HPGYIDAYL 534 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---------CchhHHHHH
Confidence 999999999999999988553332222 233557899999999999999999999999888 677888888
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCc-----------------------------cHHHHHHHHHHHHHHc-
Q 004848 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-----------------------------TVAGIEAQMGVMYYML- 571 (727)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------------------------~~~~~~~~la~~~~~~- 571 (727)
.+|......+...+|..++..++.+....+.... .-+.++..||.+|+..
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 8887777888888899888888776544321100 1123445667766542
Q ss_pred ----CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 004848 572 ----GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN 647 (727)
Q Consensus 572 ----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 647 (727)
.+.+.+...+.+|++++.+....+| ....+-+.+|.++...|++.+|+..|.++.+.. .+...+|.+
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--------~~~~dv~lN 685 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--------SDFEDVWLN 685 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHH--------hhCCceeee
Confidence 2345566666677766665544443 356788999999999999999999999998873 344558999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 648 LAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 648 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
||.||..+|+|..|++.|+.++..+. ..+...++..||+++.+.|++.+|. +.+..|+.+.|.
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkkf~------~~~~~~vl~~Lara~y~~~~~~eak-~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKKFY------KKNRSEVLHYLARAWYEAGKLQEAK-EALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc------ccCCHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhCCc
Confidence 99999999999999999999998752 2345678889999999999999999 999999999887
No 11
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.97 E-value=4.5e-27 Score=243.18 Aligned_cols=291 Identities=22% Similarity=0.302 Sum_probs=272.6
Q ss_pred hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (727)
Q Consensus 424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (727)
.....|....+...++..|..+|+|++|+..++.++++..+..|.+++........+|.+|..++++.+|+.+|++|+.+
T Consensus 191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34457888888888999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred HhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004848 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFK 582 (727)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 582 (727)
.+..+ |.+++..+.++.+||.+|...|++++|..++++|+++....++..+ .++..+..++.++..++++++|..+++
T Consensus 271 ~e~~~-G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q 349 (508)
T KOG1840|consen 271 REEVF-GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ 349 (508)
T ss_pred HHHhc-CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 99876 7889999999999999999999999999999999999998666554 677788999999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHH
Q 004848 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI 662 (727)
Q Consensus 583 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 662 (727)
++++++....+..++..+..+.+||.+|..+|++++|.++|++|+.+.++..+..++.....+.+||..|.+.+++.+|.
T Consensus 350 ~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~ 429 (508)
T KOG1840|consen 350 KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE 429 (508)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence 99999998877777788999999999999999999999999999999999998888888999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 663 EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 663 ~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
..|.++..+. ..+|+++|+....+.+|+.+|..+|++++|. ++.+.++....+
T Consensus 430 ~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~-~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 430 QLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAE-ELEEKVLNAREQ 482 (508)
T ss_pred HHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHH-HHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999999999999 999999876655
No 12
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.1e-26 Score=244.75 Aligned_cols=433 Identities=15% Similarity=0.182 Sum_probs=358.6
Q ss_pred ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHH
Q 004848 208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV 287 (727)
Q Consensus 208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 287 (727)
..|.-+...+|+++.+|+..|...+..++ |..|+.+|.+|+.+.+... +.....+|.|++.+|+.+.|+..
T Consensus 151 a~F~~Vl~~sp~Nil~LlGkA~i~ynkkd-Y~~al~yyk~al~inp~~~--------aD~rIgig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 151 AQFHFVLKQSPDNILALLGKARIAYNKKD-YRGALKYYKKALRINPACK--------ADVRIGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHhhCCcchHHHHHHHHHHhcccc-HHHHHHHHHHHHhcCcccC--------CCccchhhhHHHhccchhhHHHH
Confidence 56677788899999999999999999997 9999999999998865542 22245678999999999999999
Q ss_pred HHHhcccchhccCccchHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc
Q 004848 288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL 364 (727)
Q Consensus 288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 364 (727)
|++++++. | ..+.++..||.+-....+ +..++..+.++... ++..+.++..|+..++..|
T Consensus 222 ~~ralqLd-----p----~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--------n~~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 222 FERALQLD-----P----TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--------NNENPVALNHLANHFYFKK 284 (1018)
T ss_pred HHHHHhcC-----h----hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--------cCCCcHHHHHHHHHHhhcc
Confidence 99999996 2 345567777777665544 55666666666666 6788899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 004848 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS 444 (727)
Q Consensus 365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 444 (727)
+|..+..+...++.... .....+..++.+|.+|..+|+|++|..+|.+++.. ++......++.+|++|..
T Consensus 285 dy~~v~~la~~ai~~t~-----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-----~~d~~~l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTE-----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-----DNDNFVLPLVGLGQMYIK 354 (1018)
T ss_pred cHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-----CCCCccccccchhHHHHH
Confidence 99999999999987652 22445678999999999999999999999988753 222246678899999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHHHhcCCCCCChHhHHHHH
Q 004848 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG----KLRESKSYCENALRIYEKPVPGVPPEEIASGL 520 (727)
Q Consensus 445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 520 (727)
.|+++.|..+|++++.. .|....+...||.+|...+ ..+.|..++.++++. .+....+|
T Consensus 355 ~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~---------~~~d~~a~ 417 (1018)
T KOG2002|consen 355 RGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ---------TPVDSEAW 417 (1018)
T ss_pred hchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc---------ccccHHHH
Confidence 99999999999999998 7889999999999999886 567777777777776 34567899
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc--hh
Q 004848 521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS--AF 598 (727)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~ 598 (727)
..++.+|....-+.. +.+|..|+.+....... .-..+++++|..++..|++.+|...|.+|+..+....+.+. ..
T Consensus 418 l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 418 LELAQLLEQTDPWAS-LDAYGNALDILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 999999877655554 99999999888776333 23578999999999999999999999999998553322221 22
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004848 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (727)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~ 678 (727)
.....+++|.++...++++.|.+.|...+.. ||..+.+|..||......++..+|..++..++.+
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--------hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~------- 559 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKE--------HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI------- 559 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--------CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-------
Confidence 3456889999999999999999999999998 9999999999998888899999999999999986
Q ss_pred CChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 004848 679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (727)
Q Consensus 679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (727)
+..++.++..+|.++.....+..|. +-|+.++.
T Consensus 560 -d~~np~arsl~G~~~l~k~~~~~a~-k~f~~i~~ 592 (1018)
T KOG2002|consen 560 -DSSNPNARSLLGNLHLKKSEWKPAK-KKFETILK 592 (1018)
T ss_pred -ccCCcHHHHHHHHHHHhhhhhcccc-cHHHHHHh
Confidence 4556678888999999999999998 87776654
No 13
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.6e-26 Score=223.22 Aligned_cols=436 Identities=13% Similarity=0.099 Sum_probs=311.2
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004848 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (727)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (727)
..+..+-..|+.+++.|+ |++||+||.+|+.+. |+....|.+++.||...|+|++.++...+++++.
T Consensus 113 k~A~~lK~~GN~~f~~kk-Y~eAIkyY~~AI~l~---------p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--- 179 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKK-YDEAIKYYTQAIELC---------PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--- 179 (606)
T ss_pred HHHHHHHhhhhhhhhccc-HHHHHHHHHHHHhcC---------CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC---
Confidence 567788999999999997 999999999999985 2235569999999999999999999999999996
Q ss_pred cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHhcCH---------HH
Q 004848 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET-DPRVGETCRYLAEAHVQALQF---------SE 368 (727)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~---------~~ 368 (727)
++ ...++++.+.++..+|++.+|+.-..-. -+....-+.. .|..-..+...|.--...+-- ..
T Consensus 180 --P~----Y~KAl~RRA~A~E~lg~~~eal~D~tv~-ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~ 252 (606)
T KOG0547|consen 180 --PD----YVKALLRRASAHEQLGKFDEALFDVTVL-CILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSAT 252 (606)
T ss_pred --cH----HHHHHHHHHHHHHhhccHHHHHHhhhHH-HHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHH
Confidence 33 4456999999999999999998765432 2211100000 011112222222211110000 00
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCCC-------ChhHHHHHHHH
Q 004848 369 AQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG---DHEAALEHLVLASMTMIANDQ-------DAEVASVDCSI 438 (727)
Q Consensus 369 A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~l 438 (727)
-+..|-..+.-.+..........+.....-+.-+...+ .|..|...+.+.......... ....+.++...
T Consensus 253 fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~ 332 (606)
T KOG0547|consen 253 FIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLR 332 (606)
T ss_pred HHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHh
Confidence 01111111110000000000000111111111112222 577777777666433222111 13457788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHH
Q 004848 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (727)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (727)
|..++..|++-.|...++.++.+ +|.....|..+|.+|....+.++-...|.+|..+ +|..+.
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l---------dp~n~d 395 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL---------DPENPD 395 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc---------CCCCCc
Confidence 99999999999999999999998 7777777999999999999999999999999999 455577
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchh
Q 004848 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF 598 (727)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 598 (727)
+|+..|++++-++++++|+.-|++++.+.+.. +..+..++.+.+++++++++...|+.+...++ .
T Consensus 396 vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~-------~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP--------~ 460 (606)
T KOG0547|consen 396 VYYHRGQMRFLLQQYEEAIADFQKAISLDPEN-------AYAYIQLCCALYRQHKIAESMKTFEEAKKKFP--------N 460 (606)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 89999999999999999999999999998776 57788999999999999999999999988743 3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHhcC
Q 004848 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT-YDAIGRLDDAIEILEFVVGIREEKLG 677 (727)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~g 677 (727)
...++...|.++..++++++|++.|..|+++-.....- +. .+..+.+-|.+ +.-.+++..|+.++.+|+++
T Consensus 461 ~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~-~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~------ 532 (606)
T KOG0547|consen 461 CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI-IV-NAAPLVHKALLVLQWKEDINQAENLLRKAIEL------ 532 (606)
T ss_pred CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc-cc-cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc------
Confidence 46788999999999999999999999999983221110 00 22222222222 22348999999999999987
Q ss_pred CCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 678 TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 678 ~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+|....++..||.+...+|+.++|+ +.|++++.+...
T Consensus 533 --Dpkce~A~~tlaq~~lQ~~~i~eAi-elFEksa~lArt 569 (606)
T KOG0547|consen 533 --DPKCEQAYETLAQFELQRGKIDEAI-ELFEKSAQLART 569 (606)
T ss_pred --CchHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHh
Confidence 8999999999999999999999999 999998876543
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=1.4e-25 Score=249.11 Aligned_cols=362 Identities=13% Similarity=0.026 Sum_probs=291.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCc
Q 004848 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP 347 (727)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 347 (727)
+...+..+...|++++|+..++.++... +.++. +++.+|.+....|++++|+..|++++.. +|
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-----p~~~~----~l~~l~~~~l~~g~~~~A~~~l~~~l~~--------~P 107 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-----KNGRD----LLRRWVISPLASSQPDAVLQVVNKLLAV--------NV 107 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-----CCchh----HHHHHhhhHhhcCCHHHHHHHHHHHHHh--------CC
Confidence 4556778889999999999999999875 55543 4888999999999999999999999999 78
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 004848 348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ 427 (727)
Q Consensus 348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 427 (727)
....++..+|.++...|++++|+..|++++.+.|... .++..++.++...|++++|+..+.+++..
T Consensus 108 ~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~--------~a~~~la~~l~~~g~~~eA~~~~~~~~~~------ 173 (656)
T PRK15174 108 CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNS--------QIFALHLRTLVLMDKELQAISLARTQAQE------ 173 (656)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--------HHHHHHHHHHHHCCChHHHHHHHHHHHHh------
Confidence 8999999999999999999999999999999876543 56888999999999999999999866542
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004848 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (727)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (727)
.|.....+..++ .+...|++++|+..+++++... .+........++.++...|++++|+..|++++..
T Consensus 174 ~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~-------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~---- 241 (656)
T PRK15174 174 VPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFF-------ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR---- 241 (656)
T ss_pred CCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC-------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc----
Confidence 222233444443 4788999999999999887751 1222334456788899999999999999999987
Q ss_pred CCCCChHhHHHHHHHHHHHHHhcccHHH----HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004848 508 VPGVPPEEIASGLTDVSSIYESMNELEQ----AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583 (727)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 583 (727)
.|....++..+|.++...|++++ |+..|++++.+.+.. ..++..+|.++...|++++|+.++++
T Consensus 242 -----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~-------~~a~~~lg~~l~~~g~~~eA~~~l~~ 309 (656)
T PRK15174 242 -----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN-------VRIVTLYADALIRTGQNEKAIPLLQQ 309 (656)
T ss_pred -----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33446788899999999999986 899999999887654 57888999999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHH
Q 004848 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663 (727)
Q Consensus 584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 663 (727)
++.+. +....++..+|.++...|++++|+..|++++.. +|.....+..+|.++...|++++|+.
T Consensus 310 al~l~--------P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 310 SLATH--------PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHH
Confidence 99862 224567888999999999999999999999987 77777677778999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHH
Q 004848 664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSR 703 (727)
Q Consensus 664 ~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A 703 (727)
.|+++++...... .+...++...+...+...+...+.
T Consensus 374 ~l~~al~~~P~~~---~~~~~ea~~~~~~~~~~~~~~~~~ 410 (656)
T PRK15174 374 VFEHYIQARASHL---PQSFEEGLLALDGQISAVNLPPER 410 (656)
T ss_pred HHHHHHHhChhhc---hhhHHHHHHHHHHHHHhcCCccch
Confidence 9999998743322 122334555555555555554433
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=1.8e-25 Score=253.76 Aligned_cols=432 Identities=13% Similarity=0.035 Sum_probs=331.3
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcc
Q 004848 214 GLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE 293 (727)
Q Consensus 214 ~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 293 (727)
...+|.....+.....+....|+ +++|++.|.++...- +..+.++..+|.++...|++++|+.+|++++.
T Consensus 8 ~~~~~~~~~~~~d~~~ia~~~g~-~~~A~~~~~~~~~~~---------~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~ 77 (765)
T PRK10049 8 ALKSALSNNQIADWLQIALWAGQ-DAEVITVYNRYRVHM---------QLPARGYAAVAVAYRNLKQWQNSLTLWQKALS 77 (765)
T ss_pred hhccCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666777777888888997 899998888887531 33466789999999999999999999999998
Q ss_pred cchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 004848 294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFC 373 (727)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 373 (727)
+. +..+. ++..+|.++...|++++|+..++++++. .|.... +..+|.++...|++++|+..+
T Consensus 78 ~~-----P~~~~----a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l 139 (765)
T PRK10049 78 LE-----PQNDD----YQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAM 139 (765)
T ss_pred hC-----CCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHH
Confidence 85 44433 3778999999999999999999999999 688888 999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH-----HHHHHHHHHHHH-----
Q 004848 374 QMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV-----ASVDCSIGDTYL----- 443 (727)
Q Consensus 374 ~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~la~~~~----- 443 (727)
++++.+.|... .++..++.++...+..+.|+..++++.. .|.. ......+..++.
T Consensus 140 ~~al~~~P~~~--------~~~~~la~~l~~~~~~e~Al~~l~~~~~-------~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 140 TQALPRAPQTQ--------QYPTEYVQALRNNRLSAPALGAIDDANL-------TPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred HHHHHhCCCCH--------HHHHHHHHHHHHCCChHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHHhhcccccC
Confidence 99999987653 4577889999999999999998876542 1111 111122222222
Q ss_pred HcCCH---HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHH
Q 004848 444 SLSRY---DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGL 520 (727)
Q Consensus 444 ~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 520 (727)
..+++ ++|+..++.++..+.... ...+....+.......+...|++++|+..|+++++. +...|..+.
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p-~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~------~~~~P~~a~-- 275 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNP-DATADYQRARIDRLGALLARDRYKDVISEYQRLKAE------GQIIPPWAQ-- 275 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCC-ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc------CCCCCHHHH--
Confidence 22345 778888888776643211 112333444444233446779999999999998776 212233333
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------CCC
Q 004848 521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI------GER 594 (727)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~ 594 (727)
..+|.+|..+|++++|+.+|++++...+.. ..........++.++...|++++|+.+++++....+.. ...
T Consensus 276 ~~la~~yl~~g~~e~A~~~l~~~l~~~p~~---~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~ 352 (765)
T PRK10049 276 RWVASAYLKLHQPEKAQSILTELFYHPETI---ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTS 352 (765)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhcCCCC---CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCC
Confidence 336889999999999999999988643221 11112345667778899999999999999988753210 000
Q ss_pred C-chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004848 595 K-SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (727)
Q Consensus 595 ~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (727)
. ......++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..+++++.+
T Consensus 353 ~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l-- 422 (765)
T PRK10049 353 IPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYASVLQARGWPRAAENELKKAEVL-- 422 (765)
T ss_pred CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--
Confidence 1 1123457788999999999999999999999998 8888899999999999999999999999999987
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 674 EKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 674 ~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+|+...+++.+|.++...|++++|. ..++++++..|+
T Consensus 423 ------~Pd~~~l~~~~a~~al~~~~~~~A~-~~~~~ll~~~Pd 459 (765)
T PRK10049 423 ------EPRNINLEVEQAWTALDLQEWRQMD-VLTDDVVAREPQ 459 (765)
T ss_pred ------CCCChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCC
Confidence 6888889999999999999999999 999999999987
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=1.4e-25 Score=249.12 Aligned_cols=336 Identities=13% Similarity=0.087 Sum_probs=290.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 004848 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390 (727)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 390 (727)
....+..+...|++++|+..++..+.. .|....+++.+|.+....|++++|+..|++++...|...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~--------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~------ 110 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLT--------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP------ 110 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHh--------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh------
Confidence 445677788999999999999999998 788899999999999999999999999999999988764
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004848 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470 (727)
Q Consensus 391 ~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 470 (727)
.++..+|.++...|++++|+..|++++.+ .|....++..++.++...|++++|+..+++++.. .
T Consensus 111 --~a~~~la~~l~~~g~~~~Ai~~l~~Al~l------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--------~ 174 (656)
T PRK15174 111 --EDVLLVASVLLKSKQYATVADLAEQAWLA------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE--------V 174 (656)
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------C
Confidence 46899999999999999999999999863 4566778899999999999999999999988776 4
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004848 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (727)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (727)
|.....+..++ .+...|++++|+..+++++..... ........++.++...|++++|+..|++++...+..
T Consensus 175 P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~--------~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~ 245 (656)
T PRK15174 175 PPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFAL--------ERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG 245 (656)
T ss_pred CCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC--------cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 55555665554 478899999999999998776211 112234567888999999999999999999875443
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004848 551 PGQQSTVAGIEAQMGVMYYMLGNYSD----SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA 626 (727)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 626 (727)
..++..+|.+|...|++++ |+..|++++.+. +....++..+|.++...|++++|+.+++++
T Consensus 246 -------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a 310 (656)
T PRK15174 246 -------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADALIRTGQNEKAIPLLQQS 310 (656)
T ss_pred -------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5678899999999999986 799999998862 234678999999999999999999999999
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHH
Q 004848 627 RSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQ 706 (727)
Q Consensus 627 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~ 706 (727)
+.+ +|+...++..+|.+|...|++++|+..|++++.. +|.....+..+|.++...|++++|+ .
T Consensus 311 l~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~-~ 373 (656)
T PRK15174 311 LAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAE-S 373 (656)
T ss_pred HHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHH-H
Confidence 998 8888889999999999999999999999999975 5776667777899999999999999 9
Q ss_pred HHHHHHHHhhh
Q 004848 707 SLETLLDANSR 717 (727)
Q Consensus 707 ~l~~al~~~p~ 717 (727)
.|+++++.+|.
T Consensus 374 ~l~~al~~~P~ 384 (656)
T PRK15174 374 VFEHYIQARAS 384 (656)
T ss_pred HHHHHHHhChh
Confidence 99999999998
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=4.1e-24 Score=242.06 Aligned_cols=459 Identities=13% Similarity=0.013 Sum_probs=334.5
Q ss_pred cCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004848 192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI 271 (727)
Q Consensus 192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l 271 (727)
..+......|++..++..+..+...+|+...+++.++..+...|+ +++|+.+++++++.- |.....+..+
T Consensus 49 ~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~-~~~A~~~~~kAv~ld---------P~n~~~~~~L 118 (987)
T PRK09782 49 DKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGH-DDRARLLLEDQLKRH---------PGDARLERSL 118 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcC---------cccHHHHHHH
Confidence 344455666888888899999999999999999999999999998 999999999998862 3334444445
Q ss_pred HHHHHHcCChhHHHHHHHHhcccchhccCccchHH-------------------------------HHHHHHHHHHHHHH
Q 004848 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA-------------------------------KFAGHMQLGDTYAM 320 (727)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-------------------------------~~~~~~~la~~~~~ 320 (727)
+.+ +++++|+.+|++++...+.......... .....+.++.+|..
T Consensus 119 a~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 119 AAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred HHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH
Confidence 444 8899999999988887643211110000 01124445889999
Q ss_pred hCCHHHHHHHHHHHHHHH--------------HHH---------hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004848 321 LGQLENSLMCYTTGLEVQ--------------KQV---------LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377 (727)
Q Consensus 321 ~g~~~~A~~~~~~al~~~--------------~~~---------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 377 (727)
+|+|++|+..+.++++.. ... ..+.-.....++..++..|...|+.++|...+++.-
T Consensus 195 l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 195 LKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 999999999998876651 000 000001233445567777788888888887777654
Q ss_pred HHHHhcCCCCC---------------------------------------------------------------------
Q 004848 378 DIHKDNGSPAS--------------------------------------------------------------------- 388 (727)
Q Consensus 378 ~~~~~~~~~~~--------------------------------------------------------------------- 388 (727)
...+.......
T Consensus 275 ~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 275 PLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVA 354 (987)
T ss_pred ccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccc
Confidence 44322111000
Q ss_pred ------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------HH-------Hh---------
Q 004848 389 ------------------LEEAADRRLMGLICETKGDHEAALEHLVLASM----------TM-------IA--------- 424 (727)
Q Consensus 389 ------------------~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~----------~~-------~~--------- 424 (727)
+.....+..++......|++++|...|+++.. +. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 00011222234445566778888877776633 11 00
Q ss_pred ---------------------------------CCCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004848 425 ---------------------------------NDQDAE--VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469 (727)
Q Consensus 425 ---------------------------------~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 469 (727)
.+..|. ...+++++|.++.. +++.+|+..+.+++..
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-------- 505 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-------- 505 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--------
Confidence 001122 55677888888877 7888899988888876
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (727)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (727)
.|.. .....+|.++...|++++|+..|++++... +. ...+..+|.++...|++++|+.+|++++...+.
T Consensus 506 ~Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~~---------p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~ 574 (987)
T PRK09782 506 QPDA-WQHRAVAYQAYQVEDYATALAAWQKISLHD---------MS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG 574 (987)
T ss_pred CCch-HHHHHHHHHHHHCCCHHHHHHHHHHHhccC---------CC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc
Confidence 4543 336667777789999999999999875441 11 123678899999999999999999999876432
Q ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (727)
. ...+..++......|++++|+..|++++++. +. ..++.++|.++.+.|++++|+.+|++++.+
T Consensus 575 ~-------~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--------P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l 638 (987)
T PRK09782 575 D-------NALYWWLHAQRYIPGQPELALNDLTRSLNIA--------PS-ANAYVARATIYRQRHNVPAAVSDLRAALEL 638 (987)
T ss_pred c-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2 2344455666667799999999999999862 22 568899999999999999999999999999
Q ss_pred HHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 004848 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLE 709 (727)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~ 709 (727)
+|+...++.++|.++...|++++|+..|++++++ +|+...+++++|.++...|++++|. ..|+
T Consensus 639 --------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~-~~l~ 701 (987)
T PRK09782 639 --------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQ-HYAR 701 (987)
T ss_pred --------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH-HHHH
Confidence 8999999999999999999999999999999987 6888999999999999999999999 9999
Q ss_pred HHHHHhhh
Q 004848 710 TLLDANSR 717 (727)
Q Consensus 710 ~al~~~p~ 717 (727)
++++++|+
T Consensus 702 ~Al~l~P~ 709 (987)
T PRK09782 702 LVIDDIDN 709 (987)
T ss_pred HHHhcCCC
Confidence 99999997
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=8.8e-24 Score=240.04 Aligned_cols=414 Identities=13% Similarity=-0.015 Sum_probs=314.3
Q ss_pred ccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 004848 198 KKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS 277 (727)
Q Consensus 198 ~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 277 (727)
.-.|+..++++.+......+|..+.++..+|..+...|+ +++|+.+|++++... |....++..++.++..
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~-~~~A~~~~~~al~~~---------P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQ-WQNSLTLWQKALSLE---------PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHH
Confidence 334555566666677776788889999999999999997 999999999999863 3335567889999999
Q ss_pred cCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 004848 278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357 (727)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 357 (727)
.|++++|+..+++++... ++++ . +..+|.++...|++++|+..|+++++. .|....++..++
T Consensus 96 ~g~~~eA~~~l~~~l~~~-----P~~~----~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la 157 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-----PDKA----N-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYV 157 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-----CCCH----H-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence 999999999999999875 3332 3 777999999999999999999999999 788899999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH-----HHcCCH---HHHHHHHHHHHHHHHhCCC-C
Q 004848 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC-----ETKGDH---EAALEHLVLASMTMIANDQ-D 428 (727)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~-----~~~g~~---~~A~~~~~~al~~~~~~~~-~ 428 (727)
.++...+..++|+..++++.. .|.... .........+..++ ...+++ ++|+..++.++........ .
T Consensus 158 ~~l~~~~~~e~Al~~l~~~~~-~p~~~~---~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~ 233 (765)
T PRK10049 158 QALRNNRLSAPALGAIDDANL-TPAEKR---DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDAT 233 (765)
T ss_pred HHHHHCCChHHHHHHHHhCCC-CHHHHH---HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence 999999999999999987664 222100 00000111222222 222345 7788888877765433322 2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC
Q 004848 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (727)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (727)
+....+.......+...|++++|+..|++++.. ++..|..+. ..+|.+|...|++++|+.+|++++.....
T Consensus 234 ~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~-----~~~~P~~a~--~~la~~yl~~g~~e~A~~~l~~~l~~~p~-- 304 (765)
T PRK10049 234 ADYQRARIDRLGALLARDRYKDVISEYQRLKAE-----GQIIPPWAQ--RWVASAYLKLHQPEKAQSILTELFYHPET-- 304 (765)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-----CCCCCHHHH--HHHHHHHHhcCCcHHHHHHHHHHhhcCCC--
Confidence 334444444233446789999999999998775 111244433 33689999999999999999998865211
Q ss_pred CCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC-------CC-CccHHHHHHHHHHHHHHcCCHHHHHHH
Q 004848 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP-------GQ-QSTVAGIEAQMGVMYYMLGNYSDSYDS 580 (727)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~-~~~~~~~~~~la~~~~~~g~~~~A~~~ 580 (727)
...........++.++...|++++|+.+++++....+... .. ......++..++.++...|++++|+..
T Consensus 305 ---~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 305 ---IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred ---CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1011134566777888999999999999999987754210 11 112345677899999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHH
Q 004848 581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD 660 (727)
Q Consensus 581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 660 (727)
+++++... +....++..+|.++...|++++|+..+++++.+ +|+...+++.+|.++...|++++
T Consensus 382 l~~al~~~--------P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--------~Pd~~~l~~~~a~~al~~~~~~~ 445 (765)
T PRK10049 382 ARELAYNA--------PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--------EPRNINLEVEQAWTALDLQEWRQ 445 (765)
T ss_pred HHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHhCCHHH
Confidence 99998762 223579999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 004848 661 AIEILEFVVGI 671 (727)
Q Consensus 661 A~~~~~~al~~ 671 (727)
|...++++++.
T Consensus 446 A~~~~~~ll~~ 456 (765)
T PRK10049 446 MDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHh
Confidence 99999999986
No 19
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1e-23 Score=206.25 Aligned_cols=427 Identities=15% Similarity=0.059 Sum_probs=314.4
Q ss_pred ccccCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004848 189 KSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCL 268 (727)
Q Consensus 189 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~ 268 (727)
.+..+...+-.+++|.+||..+..+....|+.+..+-+++.+|...|+ |++.++...+|+++- |+.+.+|
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd-~~~Vied~TkALEl~---------P~Y~KAl 186 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGD-WEKVIEDCTKALELN---------PDYVKAL 186 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhh-HHHHHHHHHHHhhcC---------cHHHHHH
Confidence 344667778889999999999999999999999999999999999998 999999999999873 7789999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHH----------HHHHH
Q 004848 269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTT----------GLEVQ 338 (727)
Q Consensus 269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~----------al~~~ 338 (727)
+..+.++-.+|++++|+....-..-+. .-.+... ...+-+++-.+|. .++.+-+.. -+..+
T Consensus 187 ~RRA~A~E~lg~~~eal~D~tv~ci~~-~F~n~s~-------~~~~eR~Lkk~a~-~ka~e~~k~nr~p~lPS~~fi~sy 257 (606)
T KOG0547|consen 187 LRRASAHEQLGKFDEALFDVTVLCILE-GFQNASI-------EPMAERVLKKQAM-KKAKEKLKENRPPVLPSATFIASY 257 (606)
T ss_pred HHHHHHHHhhccHHHHHHhhhHHHHhh-hcccchh-------HHHHHHHHHHHHH-HHHHHhhcccCCCCCCcHHHHHHH
Confidence 999999999999999987665332111 0000000 0111111111111 111111110 00000
Q ss_pred HHHhCCC-------CchHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHHHH
Q 004848 339 KQVLGET-------DPRVGETCRYLAEAHVQAL---QFSEAQKFCQMALDIHKDNGSP-----ASLEEAADRRLMGLICE 403 (727)
Q Consensus 339 ~~~~~~~-------~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~-----~~~~~a~~~~~l~~~~~ 403 (727)
-..+..+ ......+...-+.-+...+ .|..|...+.+........... .....+.++...|..++
T Consensus 258 f~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 258 FGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred HhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 0000000 0000111111111111222 5777777777665544332221 22344778889999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004848 404 TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADM 483 (727)
Q Consensus 404 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 483 (727)
..|++-.|.+.|..++.+ ++.....|..+|.+|....+.++-...|.+|..+ +|..+.+|+..|.+
T Consensus 338 L~g~~~~a~~d~~~~I~l------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm 403 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKL------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQM 403 (606)
T ss_pred hcCCchhhhhhHHHHHhc------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHH
Confidence 999999999999999864 4444455899999999999999999999999998 89999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004848 484 YNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ 563 (727)
Q Consensus 484 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 563 (727)
++.++++++|+.-|++++.+ .|..+..+..++.+.++++++++++..|+.+...+|.. ..++..
T Consensus 404 ~flL~q~e~A~aDF~Kai~L---------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~-------~Evy~~ 467 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISL---------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC-------PEVYNL 467 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhc---------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------chHHHH
Confidence 99999999999999999999 67778899999999999999999999999999999887 478888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHH
Q 004848 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA-CVQRYSINEAVELFEEARSILEQECGPYHPDTL 642 (727)
Q Consensus 564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 642 (727)
.|.++..+++|++|++.|..++.+-+......- .+..+...|.+ +.-.+++..|+.++.+|+++ +|..-
T Consensus 468 fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v--~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce 537 (606)
T KOG0547|consen 468 FAEILTDQQQFDKAVKQYDKAIELEPREHLIIV--NAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCE 537 (606)
T ss_pred HHHHHhhHHhHHHHHHHHHHHHhhccccccccc--cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHH
Confidence 999999999999999999999998554221111 11222333322 22348999999999999999 99999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004848 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREE 674 (727)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 674 (727)
.++..||.+..++|+.++|+++|++++.+.+.
T Consensus 538 ~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 538 QAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988643
No 20
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.3e-23 Score=202.97 Aligned_cols=409 Identities=16% Similarity=0.145 Sum_probs=245.2
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccC
Q 004848 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (727)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (727)
..+|+.+|..|....- +.+|+..|+-.++ ..--|.....-.++|.+|++..+|.+|+.+|+.++...+...
T Consensus 201 fsvl~nlaqqy~~ndm-~~ealntyeiivk-------nkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsin- 271 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDM-TAEALNTYEIIVK-------NKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN- 271 (840)
T ss_pred HHHHHHHHHHhhhhHH-HHHHhhhhhhhhc-------ccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccc-
Confidence 4577888887766653 6777666665543 222233444566789999999999999999999998753322
Q ss_pred ccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004848 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380 (727)
Q Consensus 301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 380 (727)
....+..+.++|..+.+.|+|+.|+..|+.+++. .|.. .+-++|..|++..|+-++-.+.|++.+.+-
T Consensus 272 ---k~~rikil~nigvtfiq~gqy~dainsfdh~m~~--------~pn~-~a~~nl~i~~f~i~d~ekmkeaf~kli~ip 339 (840)
T KOG2003|consen 272 ---KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--------APNF-IAALNLIICAFAIGDAEKMKEAFQKLIDIP 339 (840)
T ss_pred ---hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--------CccH-HhhhhhhhhheecCcHHHHHHHHHHHhcCC
Confidence 2346677999999999999999999999999988 5665 455667788888999998888888887653
Q ss_pred HhcCCC---------CCHHH-----------------------------------------------------------H
Q 004848 381 KDNGSP---------ASLEE-----------------------------------------------------------A 392 (727)
Q Consensus 381 ~~~~~~---------~~~~~-----------------------------------------------------------a 392 (727)
....+. +.... .
T Consensus 340 ~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~ 419 (840)
T KOG2003|consen 340 GEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAI 419 (840)
T ss_pred CCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhh
Confidence 221110 00000 0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------HHHHhCCC---------------ChhHHHHHHHHHH
Q 004848 393 ADRRLMGLICETKGDHEAALEHLVLAS-----------------MTMIANDQ---------------DAEVASVDCSIGD 440 (727)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~A~~~~~~al-----------------~~~~~~~~---------------~~~~~~~~~~la~ 440 (727)
..-.+.+..+.+.|+++.|++.+.-.- ..+. .+. +...+.++.+.|.
T Consensus 420 dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flq-ggk~~~~aqqyad~aln~dryn~~a~~nkgn 498 (840)
T KOG2003|consen 420 DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQ-GGKDFADAQQYADIALNIDRYNAAALTNKGN 498 (840)
T ss_pred hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHh-cccchhHHHHHHHHHhcccccCHHHhhcCCc
Confidence 000112344566778887777654221 0000 000 0111222233344
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHH
Q 004848 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGL 520 (727)
Q Consensus 441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 520 (727)
+.+..|++++|.+.|++++.- +.....+++++|..+..+|+.++|+.+|-+...+... .+.++
T Consensus 499 ~~f~ngd~dka~~~ykeal~n--------dasc~ealfniglt~e~~~~ldeald~f~klh~il~n---------n~evl 561 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNN--------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN---------NAEVL 561 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcC--------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh---------hHHHH
Confidence 444555556666555555543 4455556666666666666666666666555555322 24555
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHH
Q 004848 521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFG 600 (727)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 600 (727)
..++.+|..+.+..+|+++|.++..+.+.. ..++..||.+|-+.|+-.+|..++-.....+ +...
T Consensus 562 ~qianiye~led~aqaie~~~q~~slip~d-------p~ilskl~dlydqegdksqafq~~ydsyryf--------p~ni 626 (840)
T KOG2003|consen 562 VQIANIYELLEDPAQAIELLMQANSLIPND-------PAILSKLADLYDQEGDKSQAFQCHYDSYRYF--------PCNI 626 (840)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHhcccCCCC-------HHHHHHHHHHhhcccchhhhhhhhhhccccc--------Ccch
Confidence 666666666666666666666555554443 2455556666666666666655554444331 1223
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 004848 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN 680 (727)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~ 680 (727)
.+..+||..|....-+++|+.+|++|.-+ .|........++.|+.+.|+|.+|.+.|+....- .
T Consensus 627 e~iewl~ayyidtqf~ekai~y~ekaali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--------f 690 (840)
T KOG2003|consen 627 ETIEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--------F 690 (840)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------C
Confidence 45555666666666666666666666555 5666656666666666666666666666665543 3
Q ss_pred hhHHHHHHHHHHHHHHhCC
Q 004848 681 PDVDDEKRRLAELLKEAGR 699 (727)
Q Consensus 681 p~~~~~~~~La~~~~~~g~ 699 (727)
|+..+++..|.++.-.+|-
T Consensus 691 pedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 691 PEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccchHHHHHHHHHhccccc
Confidence 5666666666666555554
No 21
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.92 E-value=9.6e-23 Score=197.03 Aligned_cols=391 Identities=16% Similarity=0.134 Sum_probs=288.2
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhccc
Q 004848 215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294 (727)
Q Consensus 215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (727)
...|+...+-..+|+.+++... |.+|+++|+-|+...+.+. ......++.++|..+.+.|+|+.|+..|+.+++.
T Consensus 231 kmf~nag~lkmnigni~~kkr~-fskaikfyrmaldqvpsin----k~~rikil~nigvtfiq~gqy~dainsfdh~m~~ 305 (840)
T KOG2003|consen 231 KMFPNAGILKMNIGNIHFKKRE-FSKAIKFYRMALDQVPSIN----KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE 305 (840)
T ss_pred cccCCCceeeeeecceeeehhh-HHHHHHHHHHHHhhccccc----hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh
Confidence 3456666777788888988875 9999999999988765442 1335678889999999999999999999988876
Q ss_pred chhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh------CCCCc---------------------
Q 004848 295 PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL------GETDP--------------------- 347 (727)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~--------------------- 347 (727)
. + .+.+-++|..|++..|+-++-.+.|.+.+.+-..+- ..++|
T Consensus 306 ~-----p-----n~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ 375 (840)
T KOG2003|consen 306 A-----P-----NFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKEN 375 (840)
T ss_pred C-----c-----cHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhh
Confidence 4 1 233456677788888887777777777655411000 00000
Q ss_pred ---------------------h--------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC-
Q 004848 348 ---------------------R--------------------VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS- 385 (727)
Q Consensus 348 ---------------------~--------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~- 385 (727)
. ....-.+.+..|++.|+++.|++.++-.-........
T Consensus 376 ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~sa 455 (840)
T KOG2003|consen 376 KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASA 455 (840)
T ss_pred hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHH
Confidence 0 0111123355677788888888776432211111000
Q ss_pred --------------C--------------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004848 386 --------------P--------------ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437 (727)
Q Consensus 386 --------------~--------------~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 437 (727)
. .....+.++.+.|.+.+..|++++|.+.|..++. ++.....++++
T Consensus 456 aa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~------ndasc~ealfn 529 (840)
T KOG2003|consen 456 AANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN------NDASCTEALFN 529 (840)
T ss_pred HhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc------CchHHHHHHHH
Confidence 0 0001123444555666677999999999999874 67778899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHH
Q 004848 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517 (727)
Q Consensus 438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 517 (727)
+|..+..+|+.++|+++|-+.-.++ ...+.+++.++.+|..+.+..+|++++-++..+. |...
T Consensus 530 iglt~e~~~~ldeald~f~klh~il--------~nn~evl~qianiye~led~aqaie~~~q~~sli---------p~dp 592 (840)
T KOG2003|consen 530 IGLTAEALGNLDEALDCFLKLHAIL--------LNNAEVLVQIANIYELLEDPAQAIELLMQANSLI---------PNDP 592 (840)
T ss_pred hcccHHHhcCHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC---------CCCH
Confidence 9999999999999999999988873 5678999999999999999999999999998883 3346
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCch
Q 004848 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA 597 (727)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 597 (727)
.++..||.+|-+.|+-.+|..++-...+.++-. ..+...||..|....-+++|+.+|+++.-+ .+
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyryfp~n-------ie~iewl~ayyidtqf~ekai~y~ekaali--------qp 657 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN-------IETIEWLAAYYIDTQFSEKAINYFEKAALI--------QP 657 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccccCcc-------hHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--------Cc
Confidence 678999999999999999999988887777655 356678899999999999999999998654 23
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004848 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEF 667 (727)
Q Consensus 598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 667 (727)
........++.|+.+.|+|.+|.++|+..... .|....++..|.++...+|-. +|.++-.+
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--------fpedldclkflvri~~dlgl~-d~key~~k 718 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--------FPEDLDCLKFLVRIAGDLGLK-DAKEYADK 718 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CccchHHHHHHHHHhccccch-hHHHHHHH
Confidence 34556667889999999999999999998777 788888999998888877743 34444433
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=1.7e-20 Score=208.63 Aligned_cols=438 Identities=12% Similarity=-0.002 Sum_probs=326.2
Q ss_pred ccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 004848 212 EAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQS 291 (727)
Q Consensus 212 ~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 291 (727)
-.....|..+...+..+...++.|+ +..|++.|+++++.. |....+...++.++...|++++|+.+++++
T Consensus 25 ~~~~~~p~~~~~~y~~aii~~r~Gd-~~~Al~~L~qaL~~~---------P~~~~av~dll~l~~~~G~~~~A~~~~eka 94 (822)
T PRK14574 25 SGFVVNPAMADTQYDSLIIRARAGD-TAPVLDYLQEESKAG---------PLQSGQVDDWLQIAGWAGRDQEVIDVYERY 94 (822)
T ss_pred cccccCccchhHHHHHHHHHHhCCC-HHHHHHHHHHHHhhC---------ccchhhHHHHHHHHHHcCCcHHHHHHHHHh
Confidence 3445567778899999999999997 999999999998864 222212226778888889999999999999
Q ss_pred cccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHH
Q 004848 292 IEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK 371 (727)
Q Consensus 292 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 371 (727)
+.-. +.. ...+..+|.+|...|++++|+..|+++++. +|....++..++.++...++.++|+.
T Consensus 95 ~~p~-----n~~----~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~ 157 (822)
T PRK14574 95 QSSM-----NIS----SRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLK 157 (822)
T ss_pred ccCC-----CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 8321 111 123555688999999999999999999999 78888888899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004848 372 FCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA 451 (727)
Q Consensus 372 ~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 451 (727)
.+++++...+... .+..++.++...+++.+|+..+++++.. .|....++..+..++...|-...|
T Consensus 158 ~l~~l~~~dp~~~---------~~l~layL~~~~~~~~~AL~~~ekll~~------~P~n~e~~~~~~~~l~~~~~~~~a 222 (822)
T PRK14574 158 QATELAERDPTVQ---------NYMTLSYLNRATDRNYDALQASSEAVRL------APTSEEVLKNHLEILQRNRIVEPA 222 (822)
T ss_pred HHHHhcccCcchH---------HHHHHHHHHHhcchHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHH
Confidence 9999988876531 2344555666677777799999988753 233333333333333333333222
Q ss_pred HH-----------------------------------------HHHHHHHHHHHhcC------CCChhHHHHHHHHHHHH
Q 004848 452 GF-----------------------------------------AYQKALTAFKTNKG------ENHPAVASVFVRLADMY 484 (727)
Q Consensus 452 ~~-----------------------------------------~~~~al~~~~~~~~------~~~~~~~~~~~~la~~~ 484 (727)
.+ ..++++.....+.. +.++....+....-.++
T Consensus 223 ~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL 302 (822)
T PRK14574 223 LRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGAL 302 (822)
T ss_pred HHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHH
Confidence 22 22333333333221 12334455666667778
Q ss_pred HHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 004848 485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM 564 (727)
Q Consensus 485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 564 (727)
...|++.+++..|+..... +..-|. .+...+|..|...+++++|+.+|..++.-.+........ ......|
T Consensus 303 ~~r~r~~~vi~~y~~l~~~------~~~~P~--y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~-~~~~~~L 373 (822)
T PRK14574 303 LVRHQTADLIKEYEAMEAE------GYKMPD--YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDD-LLDADDL 373 (822)
T ss_pred HHhhhHHHHHHHHHHhhhc------CCCCCH--HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcc-hHHHHHH
Confidence 8899999999999876655 222233 366778999999999999999999997754322111111 2223567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHH-h------CCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004848 565 GVMYYMLGNYSDSYDSFKNAISKLRA-I------GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (727)
Q Consensus 565 a~~~~~~g~~~~A~~~~~~al~~~~~-~------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (727)
...|...++|++|..++++..+..+- . .....+........++.++...|++.+|++.+++.+..
T Consensus 374 ~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-------- 445 (822)
T PRK14574 374 YYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-------- 445 (822)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 88899999999999999998873220 0 11223445678888999999999999999999999988
Q ss_pred CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.|....++..+|.++...|.+.+|...++.++.+ +|+...+...++.++..+|++.+|. .....+++..|+
T Consensus 446 aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A~-~~~~~l~~~~Pe 516 (822)
T PRK14574 446 APANQNLRIALASIYLARDLPRKAEQELKAVESL--------APRSLILERAQAETAMALQEWHQME-LLTDDVISRSPE 516 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHHH-HHHHHHHhhCCC
Confidence 8999999999999999999999999999888765 7999999999999999999999999 999999999998
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.3e-21 Score=221.78 Aligned_cols=361 Identities=12% Similarity=-0.003 Sum_probs=288.3
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCC---HHHHHHH--------
Q 004848 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQ---LENSLMC-------- 330 (727)
Q Consensus 262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~-------- 330 (727)
|.....+..++......|++++|..+|+++......... .......++.+|...+. ..+++.+
T Consensus 373 ~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 446 (987)
T PRK09782 373 PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARL------SQTLMARLASLLESHPYLATPAKVAILSKPLPLAE 446 (987)
T ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccccc------CHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence 334667888999999999999999999999985311111 11224477777777655 3333222
Q ss_pred --------------HHHHHHHHHHHhCCCCch--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 004848 331 --------------YTTGLEVQKQVLGETDPR--VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAAD 394 (727)
Q Consensus 331 --------------~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~ 394 (727)
+..+... ++ ..|. ...++..+|.++.. +++.+|+..+.+++...|.. ..
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~a----l~-~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~---------~~ 511 (987)
T PRK09782 447 QRQWQSQLPGIADNCPAIVRL----LG-DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDA---------WQ 511 (987)
T ss_pred hHHHHhhhhhhhhhHHHHHHh----cc-cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCch---------HH
Confidence 2222222 22 2456 88899999999987 89999999999999887642 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004848 395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA 474 (727)
Q Consensus 395 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 474 (727)
...+|.++...|++++|+.+|+++... .+. ...+..+|.++...|++++|+.+|++++.. .|...
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~ 576 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDN 576 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccH
Confidence 666778888999999999999986431 111 234678899999999999999999999987 56666
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCC
Q 004848 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ 554 (727)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 554 (727)
..+..++......|++++|+..|++++++ .|. ...+..+|.++...|++++|+..|++++.+.|..
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~---- 642 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNI---------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN---- 642 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh---------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----
Confidence 66667777777889999999999999988 333 5688999999999999999999999999997766
Q ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004848 555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634 (727)
Q Consensus 555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 634 (727)
..++.++|.++...|++++|+.+|++++++ .+....++.++|.++...|++++|+.+|++++++
T Consensus 643 ---~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l----- 706 (987)
T PRK09782 643 ---SNYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD----- 706 (987)
T ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----
Confidence 478899999999999999999999999986 2334679999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCCh
Q 004848 635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRV 700 (727)
Q Consensus 635 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~ 700 (727)
.|+.+.+....|.+.....+++.|.+.+.++..+ +|... +....|.++...+++
T Consensus 707 ---~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~--------~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 707 ---IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF--------SFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred ---CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc--------Cccch-hccccchHhhhcccc
Confidence 8999999999999999999999999999999876 45544 667777777777765
No 24
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.91 E-value=1.9e-22 Score=192.85 Aligned_cols=329 Identities=15% Similarity=0.148 Sum_probs=278.6
Q ss_pred HHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHH
Q 004848 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG 350 (727)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 350 (727)
-|.-+++.|++...+.+|+.|++.- .++......+|..||.+|+.+++|++|+++...-+.+.+.+- + ....+
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvG-----TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg-d-klGEA 95 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVG-----TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG-D-KLGEA 95 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhc-----chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc-c-hhccc
Confidence 4778899999999999999999873 555555666799999999999999999999988887765542 1 23455
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC--------------------HHH
Q 004848 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD--------------------HEA 410 (727)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~--------------------~~~ 410 (727)
.+.-+||.++...|.|++|+.++.+-|.+....++. ...+.+++++|.+|...|+ ++.
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDr--v~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~ 173 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDR--VLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN 173 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHHHHHHhHH--HhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence 677899999999999999999999999999988854 5667889999999998875 567
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh
Q 004848 411 ALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL 490 (727)
Q Consensus 411 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 490 (727)
|.++|..-+.+....++......++-+||..|+.+|+|+.|+.+.+.-+.+.++.+ +......++.+||.+|...|++
T Consensus 174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--DrAaeRRA~sNlgN~hiflg~f 251 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--DRAAERRAHSNLGNCHIFLGNF 251 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--hHHHHHHhhcccchhhhhhccc
Confidence 88888888888888888888899999999999999999999999999999988876 3455678999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH
Q 004848 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM 570 (727)
Q Consensus 491 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 570 (727)
+.|+++|+.++.+..++. +....+...+.||..|.-..++++|+.|+.+-+.+.... ++......+++.||..|-.
T Consensus 252 e~A~ehYK~tl~LAielg---~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL-~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 252 ELAIEHYKLTLNLAIELG---NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL-EDRIGELRACWSLGNAFNA 327 (639)
T ss_pred HhHHHHHHHHHHHHHHhc---chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHh
Confidence 999999999999887752 244457888999999999999999999999999998876 5556667888999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCH
Q 004848 571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI 616 (727)
Q Consensus 571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 616 (727)
.|..++|+.+.+..+++..++.+..... .+..++...-...|..
T Consensus 328 lg~h~kAl~fae~hl~~s~ev~D~sgel--Tar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLRSSLEVNDTSGEL--TARDNLSDLILELGQE 371 (639)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCcchhh--hhhhhhHHHHHHhCCC
Confidence 9999999999999999999887765442 3445566666666643
No 25
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=5.2e-23 Score=209.94 Aligned_cols=304 Identities=16% Similarity=0.130 Sum_probs=242.0
Q ss_pred HHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 004848 351 ETCRYLAEAHVQA--LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD 428 (727)
Q Consensus 351 ~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 428 (727)
..+..+|..|... -+..+|+..|.+.-..... ...++..+|..|+.+++|++|..+|+.+.+.-. -.
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~n--------t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p---~r 386 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYN--------TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEP---YR 386 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCC--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cc
Confidence 3344444444433 3557888888873222222 136788999999999999999999987754311 11
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC
Q 004848 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (727)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (727)
....++| ..+++.+.+--+--.+.+..+.. +|..+.+|..+|.+|..+++++.|+++|++|+.+
T Consensus 387 v~~meiy---ST~LWHLq~~v~Ls~Laq~Li~~--------~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl----- 450 (638)
T KOG1126|consen 387 VKGMEIY---STTLWHLQDEVALSYLAQDLIDT--------DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL----- 450 (638)
T ss_pred ccchhHH---HHHHHHHHhhHHHHHHHHHHHhh--------CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-----
Confidence 1111121 22222222222211222333333 7888899999999999999999999999999999
Q ss_pred CCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (727)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (727)
++..+.+|..+|.=+.....+|.|..+|+.|+.+.++. ..+|+.+|.+|.++++++.|.-+|++|+.+
T Consensus 451 ----dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh-------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I- 518 (638)
T KOG1126|consen 451 ----DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH-------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEI- 518 (638)
T ss_pred ----CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh-------hHHHHhhhhheeccchhhHHHHHHHhhhcC-
Confidence 66678899999999999999999999999999988776 479999999999999999999999999987
Q ss_pred HHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004848 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV 668 (727)
Q Consensus 589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 668 (727)
.+....++..+|.++.+.|+.++|+.+|++|+.+ +|......+..|.++...+++++|+..+++.
T Consensus 519 -------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 519 -------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred -------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 3345678888999999999999999999999999 8888889999999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 669 VGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 669 l~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.++ -|+...+++.+|.+|.+.|+.+.|+ ..|--|++++|.
T Consensus 584 k~~--------vP~es~v~~llgki~k~~~~~~~Al-~~f~~A~~ldpk 623 (638)
T KOG1126|consen 584 KEL--------VPQESSVFALLGKIYKRLGNTDLAL-LHFSWALDLDPK 623 (638)
T ss_pred HHh--------CcchHHHHHHHHHHHHHHccchHHH-HhhHHHhcCCCc
Confidence 887 5899999999999999999999999 999999999998
No 26
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1e-21 Score=195.57 Aligned_cols=412 Identities=20% Similarity=0.233 Sum_probs=269.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCcc
Q 004848 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE 302 (727)
Q Consensus 223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 302 (727)
-+-..|+..+..|+ |+.|+.+|.+|+.+- |.....|.+...+|..+|+|++|+.--.+.+++. +.
T Consensus 4 e~k~kgnaa~s~~d-~~~ai~~~t~ai~l~---------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-----p~ 68 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGD-FETAIRLFTEAIMLS---------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-----PD 68 (539)
T ss_pred HHHHHHHhhccccc-HHHHHHHHHHHHccC---------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-----Cc
Confidence 45678999999997 999999999999873 2246678899999999999999999999999986 33
Q ss_pred chHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcC-----------------
Q 004848 303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQ----------------- 365 (727)
Q Consensus 303 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------- 365 (727)
. ...|.++|..+.-+|+|++|+..|.+.|+. +|.....+..|+.++.....
T Consensus 69 w----~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--------d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~ 136 (539)
T KOG0548|consen 69 W----AKGYSRKGAALFGLGDYEEAILAYSEGLEK--------DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANL 136 (539)
T ss_pred h----hhHHHHhHHHHHhcccHHHHHHHHHHHhhc--------CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcC
Confidence 3 345999999999999999999999999999 78888888888888722210
Q ss_pred ----HHHHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------------hC
Q 004848 366 ----FSEAQKFCQMALDIHKDNGSPASL--EEAADRRLMGLICETKGDHEAALEHLVLASMTMI--------------AN 425 (727)
Q Consensus 366 ----~~~A~~~~~~al~~~~~~~~~~~~--~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--------------~~ 425 (727)
+-.....|...+...+.....-.. ........++.+. |.... ..+........ ..
T Consensus 137 p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~---~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (539)
T KOG0548|consen 137 PLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLK---GVDEL--LFYASGIEILASMAEPCKQEHNGFPII 211 (539)
T ss_pred hhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHh---cCccc--cccccccccCCCCCCcccccCCCCCcc
Confidence 011112222333332222110000 0000000011100 00000 00000000000 00
Q ss_pred CC------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004848 426 DQ------DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN 499 (727)
Q Consensus 426 ~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 499 (727)
.+ ....+.-.-.+|...+...++..|+..|..++++ + .....+.+.+.+|+..|.+.+++..+..
T Consensus 212 ~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el--------~-~~it~~~n~aA~~~e~~~~~~c~~~c~~ 282 (539)
T KOG0548|consen 212 EDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL--------A-TDITYLNNIAAVYLERGKYAECIELCEK 282 (539)
T ss_pred chhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH--------h-hhhHHHHHHHHHHHhccHHHHhhcchHH
Confidence 00 0113455678999999999999999999999998 4 6677888999999999999999999999
Q ss_pred HHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Q 004848 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD 579 (727)
Q Consensus 500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 579 (727)
+++..+.. ..+...++.++..+|..|..+++++.|+.+|++++..... ..+.-.....+++..
T Consensus 283 a~E~gre~--rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt---------------~~~ls~lk~~Ek~~k 345 (539)
T KOG0548|consen 283 AVEVGREL--RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT---------------PDLLSKLKEAEKALK 345 (539)
T ss_pred HHHHhHHH--HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---------------HHHHHHHHHHHHHHH
Confidence 88874432 1112235566677888999999999999999998776543 122223333333333
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChH
Q 004848 580 SFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD 659 (727)
Q Consensus 580 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 659 (727)
..+...-+ .+..+.-...-|..++..|+|..|+.+|.+|+.. +|+....|.+.|.||..+|.+.
T Consensus 346 ~~e~~a~~--------~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~ 409 (539)
T KOG0548|consen 346 EAERKAYI--------NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYP 409 (539)
T ss_pred HHHHHHhh--------ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHH
Confidence 33322221 1112333444466677777777777777777666 6666677777777777777777
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 660 DAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 660 ~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.|+...+.++++ +|....+|.+-|.++..+.+|++|. +.|+++++.||.
T Consensus 410 ~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAl-eay~eale~dp~ 458 (539)
T KOG0548|consen 410 EALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKAL-EAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCch
Confidence 777777777665 5666777777777777777777777 777777777665
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=4.8e-21 Score=203.34 Aligned_cols=310 Identities=15% Similarity=0.138 Sum_probs=250.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 004848 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (727)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (727)
....+.+|..+...|++++|+..|++++...|.. ..++..+|.++...|++++|+.++++++.. ......
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~ 104 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPET--------VELHLALGNLFRRRGEVDRAIRIHQNLLSR--PDLTRE 104 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCccc--------HHHHHHHHHHHHHcCcHHHHHHHHHHHhcC--CCCCHH
Confidence 3455667888999999999999999999986543 356899999999999999999999987641 001112
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCC
Q 004848 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (727)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (727)
....++..+|.+|...|++++|+.+|+++++. .|....++..++.++...|++++|+..+++++.....
T Consensus 105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--- 173 (389)
T PRK11788 105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD--- 173 (389)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---
Confidence 34467899999999999999999999999876 5667788999999999999999999999998876321
Q ss_pred CCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (727)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (727)
.........+..+|.++...|++++|+.+|+++++..+.. ..++..+|.++...|++++|+.+|++++...
T Consensus 174 -~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 244 (389)
T PRK11788 174 -SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC-------VRASILLGDLALAQGDYAAAIEALERVEEQD- 244 (389)
T ss_pred -cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 1122345567789999999999999999999999875543 4577889999999999999999999998751
Q ss_pred HhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004848 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV 669 (727)
Q Consensus 590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 669 (727)
+.....++..++.+|...|++++|+.++++++.. +|+.. .+..++.++...|++++|+.++++++
T Consensus 245 ------p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l 309 (389)
T PRK11788 245 ------PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--------YPGAD-LLLALAQLLEEQEGPEAAQALLREQL 309 (389)
T ss_pred ------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCch-HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2233567888999999999999999999999987 56554 44889999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHH--hCChhHHHHHHHHHHHH
Q 004848 670 GIREEKLGTANPDVDDEKRRLAELLKE--AGRVRSRKAQSLETLLD 713 (727)
Q Consensus 670 ~~~~~~~g~~~p~~~~~~~~La~~~~~--~g~~~~A~~~~l~~al~ 713 (727)
+. +|+.......++..+.. .|+..+|+ ..+++.++
T Consensus 310 ~~--------~P~~~~~~~l~~~~~~~~~~g~~~~a~-~~~~~~~~ 346 (389)
T PRK11788 310 RR--------HPSLRGFHRLLDYHLAEAEEGRAKESL-LLLRDLVG 346 (389)
T ss_pred Hh--------CcCHHHHHHHHHHhhhccCCccchhHH-HHHHHHHH
Confidence 76 57766555444443322 45888888 77777664
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.2e-20 Score=183.78 Aligned_cols=374 Identities=13% Similarity=0.084 Sum_probs=275.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Q 004848 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (727)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (727)
...++..|.++...|....|+..|..++... +..+.+|..|+.+.... ......... ..
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~---------P~~W~AWleL~~lit~~-------e~~~~l~~~-----l~ 222 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRY---------PWFWSAWLELSELITDI-------EILSILVVG-----LP 222 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcC---------CcchHHHHHHHHhhchH-------HHHHHHHhc-----Cc
Confidence 3446666777777777777777777766543 11233455555443221 111111111 00
Q ss_pred CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI-HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI 423 (727)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 423 (727)
.......-+.++.++....+.++++.-++....+ .+.. ...-...|.+.....++++|+..|+...+
T Consensus 223 -~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~--------~~i~~~~A~~~y~~rDfD~a~s~Feei~k--- 290 (559)
T KOG1155|consen 223 -SDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNS--------MYIKTQIAAASYNQRDFDQAESVFEEIRK--- 290 (559)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc--------HHHHHHHHHHHhhhhhHHHHHHHHHHHHh---
Confidence 0123334455666777777777777776666554 2221 13456678888999999999999987754
Q ss_pred hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (727)
Q Consensus 424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (727)
++|....-......+++-..+-.+-.-+.+.+..+ +...+.+...+|+.|...++.++|+.+|++|+++
T Consensus 291 ---nDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i--------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL 359 (559)
T KOG1155|consen 291 ---NDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI--------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL 359 (559)
T ss_pred ---cCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh--------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc
Confidence 23332222333344444444433333333444444 4555677788999999999999999999999999
Q ss_pred HhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004848 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583 (727)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 583 (727)
+|....+|..+|.-|..+++...|+..|++|+++.|.. ..+|+.||.+|..++.+.=|+-+|++
T Consensus 360 ---------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D-------yRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 360 ---------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD-------YRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred ---------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh-------HHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 56678899999999999999999999999999998876 48999999999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHH
Q 004848 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663 (727)
Q Consensus 584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 663 (727)
|+.+ .+.....|..||.||.+.++.++|+++|.+|+.. ......++..||.+|..+++.++|..
T Consensus 424 A~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--------~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 424 ALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--------GDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHHHHhHHHHHH
Confidence 9986 2334689999999999999999999999999987 34456699999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 004848 664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (727)
Q Consensus 664 ~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (727)
+|++.++.. ..-|...|+...+...|+..+.+.+++++|. .+...++.-++
T Consensus 488 ~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As-~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 488 YYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEAS-YYATLVLKGET 538 (559)
T ss_pred HHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHH-HHHHHHhcCCc
Confidence 999999976 4556778888999999999999999999998 87777766544
No 29
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.1e-20 Score=188.79 Aligned_cols=430 Identities=14% Similarity=0.113 Sum_probs=313.0
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhccc------
Q 004848 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI------ 294 (727)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 294 (727)
+.-.+.+|++++..++ |..|......- .+ . .....+.+..+.++....+|++|..++.++-..
T Consensus 49 p~d~~~~aq~l~~~~~-y~ra~~lit~~-~l------e---~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~y 117 (611)
T KOG1173|consen 49 PADIYWLAQVLYLGRQ-YERAAHLITTY-KL------E---KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSY 117 (611)
T ss_pred hHHHHHHHHHHHhhhH-HHHHHHHHHHh-hh------h---hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhh
Confidence 3455678889999887 66665544332 11 1 123567888899999999999999998843110
Q ss_pred chh---------ccCccc-hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHh-
Q 004848 295 PVI---------EEGQEH-ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA- 363 (727)
Q Consensus 295 ~~~---------~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~- 363 (727)
... ..+.+. .......++..|.+|..+.++++|...|.+|+.. ++...++...+-..++..
T Consensus 118 y~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~--------D~~c~Ea~~~lvs~~mlt~ 189 (611)
T KOG1173|consen 118 YEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA--------DAKCFEAFEKLVSAHMLTA 189 (611)
T ss_pred cchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc--------chhhHHHHHHHHHHHhcch
Confidence 000 001000 1122344677889999999999999999999877 444444333332221111
Q ss_pred ----------------cCHHHHHHHHHHHHHHHHhcCC-----C-----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004848 364 ----------------LQFSEAQKFCQMALDIHKDNGS-----P-----ASLEEAADRRLMGLICETKGDHEAALEHLVL 417 (727)
Q Consensus 364 ----------------g~~~~A~~~~~~al~~~~~~~~-----~-----~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~ 417 (727)
+...+-++.+-++......+.. + ........+...+..++..++|.+..+.++.
T Consensus 190 ~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~ 269 (611)
T KOG1173|consen 190 QEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEE 269 (611)
T ss_pred hHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHH
Confidence 1111111111111100000000 0 0011134566678888999999999999887
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHH
Q 004848 418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497 (727)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 497 (727)
.+.. ++......-..+| ++..+|+..+=...-.+.++. .|..+..|+.+|..|...|++.+|..+|
T Consensus 270 lle~-----dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~--------yP~~a~sW~aVg~YYl~i~k~seARry~ 335 (611)
T KOG1173|consen 270 LLEK-----DPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDL--------YPSKALSWFAVGCYYLMIGKYSEARRYF 335 (611)
T ss_pred HHhh-----CCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHh--------CCCCCcchhhHHHHHHHhcCcHHHHHHH
Confidence 7643 2222223334566 788888877666555555555 7999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 004848 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS 577 (727)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 577 (727)
-++..+ ++....+|...|..+...|..++|+..|..|-++.+... .-...+|.-|...+++..|
T Consensus 336 SKat~l---------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-------lP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 336 SKATTL---------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-------LPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhhc---------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-------chHHHHHHHHHHhccHHHH
Confidence 999988 566788999999999999999999999999999987652 2345689999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 004848 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (727)
Q Consensus 578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 657 (727)
..+|.+|+.+.+ ....+++.+|.+.+..+.|.+|..+|+.++...+..... .+.....+.+||.+|.+++.
T Consensus 400 e~Ff~~A~ai~P--------~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e-~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 400 EKFFKQALAIAP--------SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE-KIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HHHHHHHHhcCC--------CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc-ccchhHHHHhHHHHHHHHhh
Confidence 999999999842 245789999999999999999999999999776665543 33455689999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 658 ~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+++|+.+|++++.+ .|..+.++..+|.+|..+|+++.|+ .+|.++|.++|.
T Consensus 471 ~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Ai-d~fhKaL~l~p~ 521 (611)
T KOG1173|consen 471 YEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAI-DHFHKALALKPD 521 (611)
T ss_pred HHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHH-HHHHHHHhcCCc
Confidence 99999999999987 6888999999999999999999999 999999999997
No 30
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.4e-20 Score=199.66 Aligned_cols=309 Identities=14% Similarity=0.104 Sum_probs=249.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004848 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389 (727)
Q Consensus 310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 389 (727)
..+.+|..+...|++++|+..|+++++. +|....++..+|.++...|++++|+..+++++... .....
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~ 104 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTRE 104 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHH
Confidence 3667899999999999999999999998 68888999999999999999999999999887631 11112
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004848 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469 (727)
Q Consensus 390 ~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 469 (727)
....++..+|.+|...|++++|+.+|.+++.. .+....++..++.++...|++++|+..+++++..... ..
T Consensus 105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~ 175 (389)
T PRK11788 105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDE------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---SL 175 (389)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---cc
Confidence 23457899999999999999999999988642 4555678899999999999999999999998875211 01
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (727)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (727)
.......+..+|.++...|++++|+.+|+++++.. +....++..+|.++...|++++|+.++++++...+.
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAAD---------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC---------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 11234567789999999999999999999999872 234567889999999999999999999999876433
Q ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (727)
. ...++..++.+|...|++++|..++++++... + + . ..+..++.++...|++++|+.+|+++++.
T Consensus 247 ~------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~----p-~---~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 247 Y------LSEVLPKLMECYQALGDEAEGLEFLRRALEEY----P-G---A-DLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred h------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C-C---c-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 2 23567789999999999999999999988762 1 1 1 23478999999999999999999999998
Q ss_pred HHHhcCCCCccHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHH
Q 004848 630 LEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILEFVVGI 671 (727)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~ 671 (727)
.|+.......++..+.. .|+..+|+..+++.++.
T Consensus 312 --------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 312 --------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred --------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 78877544444443322 56899999999988863
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.4e-20 Score=178.77 Aligned_cols=374 Identities=17% Similarity=0.138 Sum_probs=285.6
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004848 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (727)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (727)
...-.++..|.++...|. ...|+..|..++..+ |....+|..|+.+.-. ++.....+.-.
T Consensus 162 ~D~fllYL~Gvv~k~~~~-~s~A~~sfv~~v~~~---------P~~W~AWleL~~lit~-------~e~~~~l~~~l--- 221 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGL-LSLAIDSFVEVVNRY---------PWFWSAWLELSELITD-------IEILSILVVGL--- 221 (559)
T ss_pred chhHHHHHHHHHHHhhch-HHHHHHHHHHHHhcC---------CcchHHHHHHHHhhch-------HHHHHHHHhcC---
Confidence 346678889999999985 899999999988754 5557777777666422 12222211110
Q ss_pred cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004848 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD 378 (727)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 378 (727)
+.+ ..+..-..++.++....+.++++.-++..+... -|.....-...|.+.+...+|++|+..|+..++
T Consensus 222 --~~~--~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~g-------f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k 290 (559)
T KOG1155|consen 222 --PSD--MHWMKKFFLKKAYQELHQHEEALQKKERLSSVG-------FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK 290 (559)
T ss_pred --ccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 110 122234567888888888888888877766652 356666777889999999999999999999887
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848 379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (727)
Q Consensus 379 ~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (727)
..|-..+ . +-....+++-..+-. .+.++- ...... +.....+.+-+|..|...++.++|+.+|++|
T Consensus 291 nDPYRl~-----d---mdlySN~LYv~~~~s-kLs~LA--~~v~~i---dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRA 356 (559)
T KOG1155|consen 291 NDPYRLD-----D---MDLYSNVLYVKNDKS-KLSYLA--QNVSNI---DKYRPETCCIIANYYSLRSEHEKAVMYFKRA 356 (559)
T ss_pred cCCCcch-----h---HHHHhHHHHHHhhhH-HHHHHH--HHHHHh---ccCCccceeeehhHHHHHHhHHHHHHHHHHH
Confidence 6443322 1 223333333333322 122221 111111 2223345677899999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHH
Q 004848 459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538 (727)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (727)
+++ +|....+|..+|.-|..+.+...|+..|++|+++ .|....+|+.||+.|.-++-..=|+-
T Consensus 357 LkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi---------~p~DyRAWYGLGQaYeim~Mh~YaLy 419 (559)
T KOG1155|consen 357 LKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI---------NPRDYRAWYGLGQAYEIMKMHFYALY 419 (559)
T ss_pred Hhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc---------CchhHHHHhhhhHHHHHhcchHHHHH
Confidence 999 8999999999999999999999999999999999 45567899999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHH
Q 004848 539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE 618 (727)
Q Consensus 539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 618 (727)
+|++|+...|.. ..+|..||.+|.+.++.++|+++|.+++..- .....++..||.+|.+.++.++
T Consensus 420 YfqkA~~~kPnD-------sRlw~aLG~CY~kl~~~~eAiKCykrai~~~--------dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 420 YFQKALELKPND-------SRLWVALGECYEKLNRLEEAIKCYKRAILLG--------DTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHHHHhcCCCc-------hHHHHHHHHHHHHhccHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHHHHHhHHH
Confidence 999999987655 4789999999999999999999999999862 2246799999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (727)
Q Consensus 619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (727)
|..+|++.++.. ...|...+....+...||.-+.+.+++++|..+..+++.
T Consensus 485 Aa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 485 AAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 999999999976 333444677788888899999999999999999988875
No 32
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.90 E-value=1e-21 Score=187.94 Aligned_cols=330 Identities=17% Similarity=0.186 Sum_probs=277.8
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004848 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDC 436 (727)
Q Consensus 357 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 436 (727)
|.-+++.|++...+.+|+.|++...... .....+|..||.+|+.+++|++|+++...-+.+.+..++....+..-.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl----~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDL----STLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHH----HHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 5567889999999999999998765432 334567899999999999999999999888888888888888888889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC--------------------hHHHHHH
Q 004848 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK--------------------LRESKSY 496 (727)
Q Consensus 437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~ 496 (727)
+||..+..+|.|++|+.++.+-+.+.++++ +......++++||.+|...|+ ++.|.++
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f 177 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF 177 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence 999999999999999999999999998887 356678999999999998775 3556777
Q ss_pred HHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHH
Q 004848 497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD 576 (727)
Q Consensus 497 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 576 (727)
|..-+++.++.. +......++-+||..|+.+|+|++|+..-+.-+.+.... |+......++.++|.+|.-.|+++.
T Consensus 178 y~eNL~l~~~lg---Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef-GDrAaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 178 YMENLELSEKLG---DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF-GDRAAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHhh---hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh-hhHHHHHHhhcccchhhhhhcccHh
Confidence 777777766632 234456788999999999999999999999999998876 7777777889999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 004848 577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (727)
Q Consensus 577 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 656 (727)
|+++|+..+.+..++++.. ..+...+.||..|....++++|+.|+.+-+.+.+++.+ ......+++.||..|...|
T Consensus 254 A~ehYK~tl~LAielg~r~--vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D--riGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRT--VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED--RIGELRACWSLGNAFNALG 329 (639)
T ss_pred HHHHHHHHHHHHHHhcchh--HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhhh
Confidence 9999999999999988764 45778889999999999999999999999999888765 4566779999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhH
Q 004848 657 RLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRS 702 (727)
Q Consensus 657 ~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~ 702 (727)
..++|+.+.++.+++..++-.+. ....+..+|..+....|..+.
T Consensus 330 ~h~kAl~fae~hl~~s~ev~D~s--gelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 330 EHRKALYFAELHLRSSLEVNDTS--GELTARDNLSDLILELGQEDS 373 (639)
T ss_pred hHHHHHHHHHHHHHHHHHhCCcc--hhhhhhhhhHHHHHHhCCCcc
Confidence 99999999999999887764322 234456677777777776554
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.2e-21 Score=200.09 Aligned_cols=301 Identities=17% Similarity=0.181 Sum_probs=247.5
Q ss_pred HHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004848 309 AGHMQLGDTYAML--GQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (727)
Q Consensus 309 ~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (727)
..+..+|..|... -+..+|+..|.+.-.. +++...++..+|..|+.+++|++|..+|+.+-++.|-..+.
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h--------~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~ 389 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSH--------HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKG 389 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh--------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 3455566555543 4567888888883333 57788999999999999999999999999998887654432
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004848 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK 466 (727)
Q Consensus 387 ~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 466 (727)
.-....+++.+.+ +-++.++-+- + ...++.....|+.+|.||..+++++.|+++|++|+++
T Consensus 390 --------meiyST~LWHLq~-~v~Ls~Laq~--L---i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl----- 450 (638)
T KOG1126|consen 390 --------MEIYSTTLWHLQD-EVALSYLAQD--L---IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL----- 450 (638)
T ss_pred --------hhHHHHHHHHHHh-hHHHHHHHHH--H---HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-----
Confidence 1122223332222 1222333222 2 2345666789999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 004848 467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546 (727)
Q Consensus 467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (727)
+|..+.+|..+|.=+....++|.|..+|+.|+.+ .+....+|+.+|.+|.++++++.|.-+|++|+.+
T Consensus 451 ---dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~---------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I 518 (638)
T KOG1126|consen 451 ---DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV---------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI 518 (638)
T ss_pred ---CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC---------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC
Confidence 8999999999999999999999999999999998 5556789999999999999999999999999999
Q ss_pred HHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004848 547 YNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA 626 (727)
Q Consensus 547 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 626 (727)
.|.. ..+...+|.++.+.|+.++|+.+|++|+.+- +......+..|.++...+++++|+..+++.
T Consensus 519 NP~n-------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--------~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 519 NPSN-------SVILCHIGRIQHQLKRKDKALQLYEKAIHLD--------PKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred Cccc-------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--------CCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 8766 4677889999999999999999999999862 223467788999999999999999999999
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 627 RSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 627 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
.++ -|+...+++.+|.+|.++|+.+.|+..|--|..+
T Consensus 584 k~~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 584 KEL--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHh--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 998 8999999999999999999999999999999876
No 34
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.89 E-value=3.6e-19 Score=184.36 Aligned_cols=434 Identities=14% Similarity=0.061 Sum_probs=338.0
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004848 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (727)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (727)
..+.++-.+...+...|+ ++.+.++|++++... ......|+.++.+|...|....|+.+++..+...+
T Consensus 321 nd~ai~d~Lt~al~~~g~-f~~lae~fE~~~~~~---------~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~-- 388 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQ-FEVLAEQFEQALPFS---------FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE-- 388 (799)
T ss_pred chHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHhh---------hhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc--
Confidence 455666677777888887 999999999998764 22355688999999999999999999999987742
Q ss_pred cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc-----------CHH
Q 004848 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL-----------QFS 367 (727)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~ 367 (727)
.+.++.. .++.-..|+...+.+++++.+..+++...... .....+.++..+|.+|..+- ...
T Consensus 389 -~ps~~s~---~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ 461 (799)
T KOG4162|consen 389 -QPSDISV---LLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHK 461 (799)
T ss_pred -CCCcchH---HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHH
Confidence 2333322 34455566778899999999999999965332 23445677888888876432 246
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC
Q 004848 368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR 447 (727)
Q Consensus 368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 447 (727)
++++.+++++++.+.+. .+.+.++.-|...++.+.|+.+..+++.+ .....+.+|..++.++...++
T Consensus 462 kslqale~av~~d~~dp--------~~if~lalq~A~~R~l~sAl~~~~eaL~l-----~~~~~~~~whLLALvlSa~kr 528 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPTDP--------LVIFYLALQYAEQRQLTSALDYAREALAL-----NRGDSAKAWHLLALVLSAQKR 528 (799)
T ss_pred HHHHHHHHHHhcCCCCc--------hHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHhhhhh
Confidence 77888888888876654 45899999999999999999999999864 234556789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHH
Q 004848 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY 527 (727)
Q Consensus 448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 527 (727)
+.+|+.....+++- .+.+.........+-...++.++|+..+...+.+++...+-...-.........+.+.
T Consensus 529 ~~~Al~vvd~al~E--------~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~ 600 (799)
T KOG4162|consen 529 LKEALDVVDAALEE--------FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLH 600 (799)
T ss_pred hHHHHHHHHHHHHH--------hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccc
Confidence 99999999999987 4554455555566666789999999999999999875321111111122233334445
Q ss_pred HhcccHHHHHHHHHHHHHHHHhC----------------CCCC---ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848 528 ESMNELEQAIKLLQKALKIYNDA----------------PGQQ---STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (727)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~~~~----------------~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (727)
....+..+|+..+.++..+.... ++.. .....+|...+..+...++.++|..++.++-.+.
T Consensus 601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~ 680 (799)
T KOG4162|consen 601 LALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID 680 (799)
T ss_pred cCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Confidence 55566777777777766654421 1111 1234567788999999999999999999998863
Q ss_pred HHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHH--HHH
Q 004848 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE--ILE 666 (727)
Q Consensus 589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~ 666 (727)
+..+..|+..|.++...|++.+|.+.|..|+.+ +|+...+...+|.++...|+..-|.. ++.
T Consensus 681 --------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~ 744 (799)
T KOG4162|consen 681 --------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLS 744 (799)
T ss_pred --------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 456789999999999999999999999999999 89999999999999999999888888 999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 667 FVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 667 ~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.++++ +|.+.++|+.||.++.++|+.++|. ++|..++++++.
T Consensus 745 dalr~--------dp~n~eaW~~LG~v~k~~Gd~~~Aa-ecf~aa~qLe~S 786 (799)
T KOG4162|consen 745 DALRL--------DPLNHEAWYYLGEVFKKLGDSKQAA-ECFQAALQLEES 786 (799)
T ss_pred HHHhh--------CCCCHHHHHHHHHHHHHccchHHHH-HHHHHHHhhccC
Confidence 99987 7999999999999999999999999 999999999987
No 35
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.88 E-value=5.8e-18 Score=193.73 Aligned_cols=416 Identities=12% Similarity=0.068 Sum_probs=282.2
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004848 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (727)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (727)
.....++..-..+.+.|+ +++|++.|++.... +.. +.....+..+...+...|..++|..+|+....
T Consensus 368 ~~~~~~~~~y~~l~r~G~-l~eAl~Lfd~M~~~------gvv-~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----- 434 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGR-IKDCIDLLEDMEKR------GLL-DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----- 434 (1060)
T ss_pred CCchHHHHHHHHHHHCcC-HHHHHHHHHHHHhC------CCC-CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----
Confidence 334455556666778897 88888888775431 111 11233344455667778888888888876543
Q ss_pred cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004848 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD 378 (727)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 378 (727)
+ ...+|..+-..|...|++++|..+|.++.+.. -.....+|..+...|.+.|++++|..+|+++..
T Consensus 435 --p-----d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~ 500 (1060)
T PLN03218 435 --P-----TLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-------LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 500 (1060)
T ss_pred --C-----CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 1 22347777778888888888888888776651 122346677788888888888888888887765
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848 379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (727)
Q Consensus 379 ~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (727)
.... +. ..+|..+...|.+.|++++|+.+|..... .+..|+ ..+|..+...|.+.|++++|..+|.++
T Consensus 501 ~Gv~----Pd---vvTynaLI~gy~k~G~~eeAl~lf~~M~~----~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM 568 (1060)
T PLN03218 501 AGVE----AN---VHTFGALIDGCARAGQVAKAFGAYGIMRS----KNVKPD-RVVFNALISACGQSGAVDRAFDVLAEM 568 (1060)
T ss_pred cCCC----CC---HHHHHHHHHHHHHCcCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3211 11 25678888888888888888888876542 233343 356778888888888888888888877
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHH
Q 004848 459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538 (727)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (727)
...... -.|+ ..+|..+...|.+.|++++|..+|+++.+.. . .....+|+.+...|.+.|++++|+.
T Consensus 569 ~~~~~g----i~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~g------i--~p~~~tynsLI~ay~k~G~~deAl~ 635 (1060)
T PLN03218 569 KAETHP----IDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYN------I--KGTPEVYTIAVNSCSQKGDWDFALS 635 (1060)
T ss_pred HHhcCC----CCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC------C--CCChHHHHHHHHHHHhcCCHHHHHH
Confidence 553100 0233 4677777888888888888888888776651 1 1124567778888888888888888
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHH
Q 004848 539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE 618 (727)
Q Consensus 539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 618 (727)
+|.+.... +..+. ..+|..+...|.+.|++++|..++.++.+. +-. ....+|..+...|.+.|++++
T Consensus 636 lf~eM~~~-----Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----G~~---pd~~tynsLI~ay~k~G~~ee 702 (1060)
T PLN03218 636 IYDDMKKK-----GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ----GIK---LGTVSYSSLMGACSNAKNWKK 702 (1060)
T ss_pred HHHHHHHc-----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCC---CCHHHHHHHHHHHHhCCCHHH
Confidence 88877653 22222 346777788888888888888888876642 111 124577888888888888888
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhC
Q 004848 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG 698 (727)
Q Consensus 619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g 698 (727)
|.++|++.... + -.|+. .+|..|...|.+.|++++|+++|++.... .-.|+ ..++..|...+.+.|
T Consensus 703 A~~lf~eM~~~-----g-~~Pdv-vtyN~LI~gy~k~G~~eeAlelf~eM~~~------Gi~Pd-~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 703 ALELYEDIKSI-----K-LRPTV-STMNALITALCEGNQLPKALEVLSEMKRL------GLCPN-TITYSILLVASERKD 768 (1060)
T ss_pred HHHHHHHHHHc-----C-CCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCC
Confidence 88888876543 1 13443 46788888888888888888888877543 12344 446666677888888
Q ss_pred ChhHHHHHHHHHHHHH
Q 004848 699 RVRSRKAQSLETLLDA 714 (727)
Q Consensus 699 ~~~~A~~~~l~~al~~ 714 (727)
++++|. ..+..+++.
T Consensus 769 ~le~A~-~l~~~M~k~ 783 (1060)
T PLN03218 769 DADVGL-DLLSQAKED 783 (1060)
T ss_pred CHHHHH-HHHHHHHHc
Confidence 888888 888777653
No 36
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.88 E-value=1.9e-19 Score=204.29 Aligned_cols=432 Identities=11% Similarity=0.042 Sum_probs=299.1
Q ss_pred cccccccccccccccccCCC--CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 004848 197 MKKRKGKLHKGQDVSEAGLD--KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAI 274 (727)
Q Consensus 197 ~~~~~~~~~a~~~~~~~~~~--~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~ 274 (727)
+...+.+..+.+.+...... .+-....+..+...+...++ ++.|...+....+.- -.++ ...+..+...
T Consensus 97 l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~-~~~a~~l~~~m~~~g-----~~~~---~~~~n~Li~~ 167 (697)
T PLN03081 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKS-IRCVKAVYWHVESSG-----FEPD---QYMMNRVLLM 167 (697)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhC-----CCcc---hHHHHHHHHH
Confidence 34455555555444433221 11234556667777777776 888888777665531 1222 4567788899
Q ss_pred HHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-------------
Q 004848 275 YCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV------------- 341 (727)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------- 341 (727)
|.+.|++++|..+|++.... ...+|..+...|.+.|++++|+.+|++.++.....
T Consensus 168 y~k~g~~~~A~~lf~~m~~~------------~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~ 235 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPER------------NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA 235 (697)
T ss_pred HhcCCCHHHHHHHHhcCCCC------------CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHh
Confidence 99999999999999987542 12348889999999999999999999886531000
Q ss_pred ---------------hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC
Q 004848 342 ---------------LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG 406 (727)
Q Consensus 342 ---------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g 406 (727)
....-.....++..|...|.+.|++++|..+|++.... ...+|+.+...|...|
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-----------~~vt~n~li~~y~~~g 304 (697)
T PLN03081 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK-----------TTVAWNSMLAGYALHG 304 (697)
T ss_pred cCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC-----------ChhHHHHHHHHHHhCC
Confidence 00000011234456677788888888888888765321 1246888888888888
Q ss_pred CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004848 407 DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR 486 (727)
Q Consensus 407 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 486 (727)
++++|+.+|.+... .+..|+. .++..+...+...|++++|...+..+++. ..+....++..|...|.+
T Consensus 305 ~~~eA~~lf~~M~~----~g~~pd~-~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-------g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 305 YSEEALCLYYEMRD----SGVSIDQ-FTFSIMIRIFSRLALLEHAKQAHAGLIRT-------GFPLDIVANTALVDLYSK 372 (697)
T ss_pred CHHHHHHHHHHHHH----cCCCCCH-HHHHHHHHHHHhccchHHHHHHHHHHHHh-------CCCCCeeehHHHHHHHHH
Confidence 88888888876542 2333333 46777788888888888888888777665 234455677888888888
Q ss_pred cCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHH
Q 004848 487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV 566 (727)
Q Consensus 487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~ 566 (727)
.|++++|...|++..+. ...+|+.+...|...|+.++|+++|++.... |..+. ..++..+..
T Consensus 373 ~G~~~~A~~vf~~m~~~------------d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g~~Pd-~~T~~~ll~ 434 (697)
T PLN03081 373 WGRMEDARNVFDRMPRK------------NLISWNALIAGYGNHGRGTKAVEMFERMIAE-----GVAPN-HVTFLAVLS 434 (697)
T ss_pred CCCHHHHHHHHHhCCCC------------CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCC-HHHHHHHHH
Confidence 88888888888765321 1346888888888888888888888887653 22222 245677778
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHH
Q 004848 567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS 646 (727)
Q Consensus 567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 646 (727)
.+.+.|..++|..+|+...+. . +..+ ....|..+..+|.+.|++++|.++++++- ..|+. .+|.
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~---~-g~~p--~~~~y~~li~~l~r~G~~~eA~~~~~~~~---------~~p~~-~~~~ 498 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSEN---H-RIKP--RAMHYACMIELLGREGLLDEAYAMIRRAP---------FKPTV-NMWA 498 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHh---c-CCCC--CccchHhHHHHHHhcCCHHHHHHHHHHCC---------CCCCH-HHHH
Confidence 888888888888888877642 1 1111 23578888888889999999988876531 13443 4688
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 004848 647 NLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (727)
Q Consensus 647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (727)
.|...+...|+++.|...+++.+++ .|+....|..|..+|.+.|++++|. +.++...+..
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~~l~~~--------~p~~~~~y~~L~~~y~~~G~~~~A~-~v~~~m~~~g 558 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAEKLYGM--------GPEKLNNYVVLLNLYNSSGRQAEAA-KVVETLKRKG 558 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhCC--------CCCCCcchHHHHHHHHhCCCHHHHH-HHHHHHHHcC
Confidence 8888888999999999888887654 4666678889999999999999999 8888776543
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.87 E-value=4e-19 Score=187.12 Aligned_cols=393 Identities=16% Similarity=0.149 Sum_probs=294.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Q 004848 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (727)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (727)
+..+...|..++..|++++|..++.+++... +.++ .+|+.||.+|..+|+.+++...+-.|-.+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-----p~~~----~ay~tL~~IyEqrGd~eK~l~~~llAAHL------- 202 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-----PRNP----IAYYTLGEIYEQRGDIEKALNFWLLAAHL------- 202 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----ccch----hhHHHHHHHHHHcccHHHHHHHHHHHHhc-------
Confidence 3446667888888899999999999999886 3333 35999999999999999999999888877
Q ss_pred CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 004848 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA 424 (727)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 424 (727)
+|.....|..++.....+|++.+|.-+|.+|+...|.+. ...+..+.+|.+.|++..|...|.+.+.....
T Consensus 203 -~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~--------~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 203 -NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW--------ELIYERSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred -CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch--------HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 677779999999999999999999999999999988764 45788899999999999999999988765431
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH--
Q 004848 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR-- 502 (727)
Q Consensus 425 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-- 502 (727)
. +....-......+..+...++-+.|+..++.++.... .......+..++.++.....++.|.........
T Consensus 274 ~-d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~------~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~ 346 (895)
T KOG2076|consen 274 V-DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK------DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRE 346 (895)
T ss_pred h-hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc------ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccc
Confidence 1 1112223334457788888888999999999888322 233345566889999999999999888766555
Q ss_pred --------------------HHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHH
Q 004848 503 --------------------IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA 562 (727)
Q Consensus 503 --------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 562 (727)
++.- +..-...+..+...++.+..+.++..+++..+..--.. ........+.
T Consensus 347 ~e~d~~e~~~~~~~~~~~~~~~~~--~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~------~~~d~~dL~~ 418 (895)
T KOG2076|consen 347 SEKDDSEWDTDERRREEPNALCEV--GKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV------WVSDDVDLYL 418 (895)
T ss_pred cCCChhhhhhhhhccccccccccC--CCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC------ChhhhHHHHH
Confidence 1111 01111222223566666666777766666555422111 1234467889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHH
Q 004848 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL 642 (727)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 642 (727)
.++.+|...|++.+|+.+|..+... .....+.+|..+|.||..+|.+++|+++|++++.. .|+..
T Consensus 419 d~a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~ 483 (895)
T KOG2076|consen 419 DLADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNL 483 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCch
Confidence 9999999999999999999887753 12234679999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-HhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 004848 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIRE-EKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (727)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (727)
++...|+.++..+|+.++|.+.+++...--. ..-+...+...........+|...|+.++=+ .....++.
T Consensus 484 D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi-~t~~~Lv~ 554 (895)
T KOG2076|consen 484 DARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI-NTASTLVD 554 (895)
T ss_pred hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHH
Confidence 9999999999999999999988887541000 0000112334567788899999999999876 55544443
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.87 E-value=2.8e-19 Score=188.24 Aligned_cols=355 Identities=15% Similarity=0.106 Sum_probs=276.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004848 308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387 (727)
Q Consensus 308 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 387 (727)
+..++..|+..+..|++++|...+.++++. +|....+|+.||.+|..+|+.+++..++-.|-.+.|...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~--- 207 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY--- 207 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh---
Confidence 445788899999999999999999999999 899999999999999999999999999988877776654
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004848 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG 467 (727)
Q Consensus 388 ~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 467 (727)
..|..++.....+|++.+|.-+|.+|+.. .|......+..+.+|.++|++..|...|.+++......
T Consensus 208 -----e~W~~ladls~~~~~i~qA~~cy~rAI~~------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~-- 274 (895)
T KOG2076|consen 208 -----ELWKRLADLSEQLGNINQARYCYSRAIQA------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV-- 274 (895)
T ss_pred -----HHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch--
Confidence 35999999999999999999999999863 55557788899999999999999999999999882100
Q ss_pred CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--
Q 004848 468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK-- 545 (727)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-- 545 (727)
+...........+..+...++-+.|++.++.++...... .....++.++.++....+++.|.........
T Consensus 275 -d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~-------~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~ 346 (895)
T KOG2076|consen 275 -DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE-------ASLEDLNILAELFLKNKQSDKALMKIVDDRNRE 346 (895)
T ss_pred -hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc-------ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccc
Confidence 001222333445778888888899999999998843221 1233466788999999999999888766555
Q ss_pred --------------------HHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 004848 546 --------------------IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQ 605 (727)
Q Consensus 546 --------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 605 (727)
+.+-..+....+..+...++.+..+.++..+++..+..--.. .+......+..
T Consensus 347 ~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~-------~~~d~~dL~~d 419 (895)
T KOG2076|consen 347 SEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV-------WVSDDVDLYLD 419 (895)
T ss_pred cCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC-------ChhhhHHHHHH
Confidence 111111111222223556666666777777776655432221 13345678999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004848 606 MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDD 685 (727)
Q Consensus 606 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~ 685 (727)
++.++...|++.+|+.+|..+... + ......+|+.+|.||..+|.+++|+++|++++.+ .|++.+
T Consensus 420 ~a~al~~~~~~~~Al~~l~~i~~~------~-~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~D 484 (895)
T KOG2076|consen 420 LADALTNIGKYKEALRLLSPITNR------E-GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNLD 484 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHhcC------c-cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCchh
Confidence 999999999999999999998764 1 1223568999999999999999999999999987 699999
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 686 EKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 686 ~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+...|+.+|..+|+.++|. +.++....-|+.
T Consensus 485 ~Ri~Lasl~~~~g~~Ekal-EtL~~~~~~D~~ 515 (895)
T KOG2076|consen 485 ARITLASLYQQLGNHEKAL-ETLEQIINPDGR 515 (895)
T ss_pred hhhhHHHHHHhcCCHHHHH-HHHhcccCCCcc
Confidence 9999999999999999999 988887744433
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.3e-19 Score=178.39 Aligned_cols=418 Identities=17% Similarity=0.174 Sum_probs=297.7
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH------HHHHh-c-----CCC----CCHHHHHHHHHHHHHHHHcCChhH
Q 004848 220 LGPLLLKQARELISSGDNPQKALELALRAAK------SFEIG-A-----NGK----PSLELVMCLHVIAAIYCSLGQYNE 283 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~------~~~~~-~-----~~~----~~~~~~~~~~~la~~~~~~g~~~~ 283 (727)
.....+..+.++....+ |++|+....++-. .+++. . +.. +..-....++..|.+|..+.++++
T Consensus 81 d~~cryL~~~~l~~lk~-~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 81 DIACRYLAAKCLVKLKE-WDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHH
Confidence 34455666777777766 7777766653210 01111 0 000 011123345567889999999999
Q ss_pred HHHHHHHhcccchhccCccchHHHHHHHHHHH-HHHHHhCCHH------HHHHHHHHHHHHHH-H-------HhCC----
Q 004848 284 AIPVLEQSIEIPVIEEGQEHALAKFAGHMQLG-DTYAMLGQLE------NSLMCYTTGLEVQK-Q-------VLGE---- 344 (727)
Q Consensus 284 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~------~A~~~~~~al~~~~-~-------~~~~---- 344 (727)
|...|.+|+.........-.. .+..++..+ ..+......+ +=.+..+...++.. + +..+
T Consensus 160 ar~~Y~~Al~~D~~c~Ea~~~--lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl 237 (611)
T KOG1173|consen 160 ARDKYKEALLADAKCFEAFEK--LVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESL 237 (611)
T ss_pred HHHHHHHHHhcchhhHHHHHH--HHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhh
Confidence 999999999875221111000 001111111 1111111101 11111111111110 0 0000
Q ss_pred -CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848 345 -TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI 423 (727)
Q Consensus 345 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 423 (727)
.-..........+..++..++|.+..+.+...++..|-... ..-..+| ++...|+..+-...-.+.+
T Consensus 238 ~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~-------~~~~~ia-~l~el~~~n~Lf~lsh~LV---- 305 (611)
T KOG1173|consen 238 IGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLP-------CLPLHIA-CLYELGKSNKLFLLSHKLV---- 305 (611)
T ss_pred hhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcc-------hHHHHHH-HHHHhcccchHHHHHHHHH----
Confidence 01234567778899999999999999999999998876543 2234455 7777777654443333332
Q ss_pred hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (727)
Q Consensus 424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (727)
...|..+..|+.+|..|...|++.+|..+|-++..+ ++..+.+|...|..+...|+.++|+..|..|-++
T Consensus 306 --~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl 375 (611)
T KOG1173|consen 306 --DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL 375 (611)
T ss_pred --HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh
Confidence 356777789999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred HhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004848 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583 (727)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 583 (727)
+... ..| ...+|.-|..+++++-|..+|.+|+.+.|..+ .++..+|.+.+..+.|.+|..+|+.
T Consensus 376 ~~G~----hlP-----~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dp-------lv~~Elgvvay~~~~y~~A~~~f~~ 439 (611)
T KOG1173|consen 376 MPGC----HLP-----SLYLGMEYMRTNNLKLAEKFFKQALAIAPSDP-------LVLHELGVVAYTYEEYPEALKYFQK 439 (611)
T ss_pred ccCC----cch-----HHHHHHHHHHhccHHHHHHHHHHHHhcCCCcc-------hhhhhhhheeehHhhhHHHHHHHHH
Confidence 6543 333 45689999999999999999999999988763 6788999999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHH
Q 004848 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663 (727)
Q Consensus 584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 663 (727)
++...+....... .....+.+||-++.+++.+++|+.+|++++.+ .|..+.++..+|.+|..+|+++.|++
T Consensus 440 ~l~~ik~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 440 ALEVIKSVLNEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHhhhcccccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHHH
Confidence 9988777766654 56778999999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004848 664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLK 695 (727)
Q Consensus 664 ~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~ 695 (727)
+|.+++.+ .|++..+-..|+.+..
T Consensus 511 ~fhKaL~l--------~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 511 HFHKALAL--------KPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHhc--------CCccHHHHHHHHHHHH
Confidence 99999987 4666555555554443
No 40
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=4e-18 Score=189.77 Aligned_cols=418 Identities=11% Similarity=-0.039 Sum_probs=307.8
Q ss_pred CCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004848 193 GATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIA 272 (727)
Q Consensus 193 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la 272 (727)
.+-....+|++..|++.+.++...+|.....+..++..+...|+ +++|+.++++++. +.+.....+..+|
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~-~~~A~~~~eka~~---------p~n~~~~~llalA 109 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGR-DQEVIDVYERYQS---------SMNISSRGLASAA 109 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCC-cHHHHHHHHHhcc---------CCCCCHHHHHHHH
Confidence 33445667888888889999999999986555588888888897 8999999999871 2223345566668
Q ss_pred HHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Q 004848 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET 352 (727)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 352 (727)
.+|...|+|++|+++|+++++.. ++.+. ++..++.+|...++.++|+..+++++.. +|.....
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~d-----P~n~~----~l~gLa~~y~~~~q~~eAl~~l~~l~~~--------dp~~~~~ 172 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKD-----PTNPD----LISGMIMTQADAGRGGVVLKQATELAER--------DPTVQNY 172 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-----CCCHH----HHHHHHHHHhhcCCHHHHHHHHHHhccc--------CcchHHH
Confidence 89999999999999999999886 44443 3667899999999999999999999888 5664333
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH-----------------
Q 004848 353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL----------------- 415 (727)
Q Consensus 353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~----------------- 415 (727)
..++.++...++..+|+..++++++..|.... .+..+..+....|-...|++..
T Consensus 173 -l~layL~~~~~~~~~AL~~~ekll~~~P~n~e--------~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~ 243 (822)
T PRK14574 173 -MTLSYLNRATDRNYDALQASSEAVRLAPTSEE--------VLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLER 243 (822)
T ss_pred -HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHH
Confidence 55566666677887799999999998876542 2333333333333322222221
Q ss_pred ------------------------HHHH----HHHHhCCCC----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848 416 ------------------------VLAS----MTMIANDQD----AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463 (727)
Q Consensus 416 ------------------------~~al----~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 463 (727)
++++ .+....+.. +....+....-.++...|++.+++..|+.....
T Consensus 244 ~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~-- 321 (822)
T PRK14574 244 DAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE-- 321 (822)
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc--
Confidence 1111 111111121 233445555666777888999999888866543
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 004848 464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA 543 (727)
Q Consensus 464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (727)
..+.-..+....|..|...++.++|+.+|..++.-..... ..+........|...|...+++++|..++++.
T Consensus 322 -----~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~---~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~ 393 (822)
T PRK14574 322 -----GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF---RNSDDLLDADDLYYSLNESEQLDKAYQFAVNY 393 (822)
T ss_pred -----CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc---CCCcchHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1233345778889999999999999999999876532110 11122333467888999999999999999999
Q ss_pred HHHHHh-C-------CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCC
Q 004848 544 LKIYND-A-------PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS 615 (727)
Q Consensus 544 l~~~~~-~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 615 (727)
.+..+- . ....+........++.++...|++.+|++.+++.+... |....++..+|.++..+|.
T Consensus 394 ~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--------P~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 394 SEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--------PANQNLRIALASIYLARDL 465 (822)
T ss_pred HhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCC
Confidence 874441 0 12234556778889999999999999999999997752 3356788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (727)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (727)
+.+|+..++.++.+ +|+...+...+|.++..+|++.+|......+++..
T Consensus 466 p~~A~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 466 PRKAEQELKAVESL--------APRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 99999999998888 89999999999999999999999999999999874
No 41
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.86 E-value=9.1e-18 Score=192.14 Aligned_cols=375 Identities=15% Similarity=0.139 Sum_probs=290.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccc
Q 004848 224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH 303 (727)
Q Consensus 224 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 303 (727)
+..+...+...|. ..+|+.+|.... .++ ...|..+-..|...|++++|..+|+++.+.. ..
T Consensus 409 ~~~li~~~~~~g~-~~eAl~lf~~M~---------~pd---~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-----l~- 469 (1060)
T PLN03218 409 HAKFFKACKKQRA-VKEAFRFAKLIR---------NPT---LSTFNMLMSVCASSQDIDGALRVLRLVQEAG-----LK- 469 (1060)
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHcC---------CCC---HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-----CC-
Confidence 3344455667776 777777665432 133 4568888889999999999999999987652 11
Q ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004848 304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383 (727)
Q Consensus 304 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 383 (727)
....+|..+...|.+.|++++|..+|+++.+.. -.| ...+|..+...|.+.|++++|+.+|.+.....-.
T Consensus 470 --pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------v~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~- 539 (1060)
T PLN03218 470 --ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------VEA-NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK- 539 (1060)
T ss_pred --CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC-
Confidence 123458889999999999999999999987651 123 4578899999999999999999999988654311
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848 384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463 (727)
Q Consensus 384 ~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 463 (727)
+. ..+|..+...|...|++++|.++|.+.... ..+..|+ ..+|..+...|.+.|++++|.++|+++.+.
T Consensus 540 ---PD---~vTYnsLI~a~~k~G~~deA~~lf~eM~~~--~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-- 608 (1060)
T PLN03218 540 ---PD---RVVFNALISACGQSGAVDRAFDVLAEMKAE--THPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY-- 608 (1060)
T ss_pred ---CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--cCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--
Confidence 11 357999999999999999999999877532 1122333 457788889999999999999999988765
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 004848 464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA 543 (727)
Q Consensus 464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (727)
+.+....+|..+...|.+.|++++|+.+|.+.... +.. |+ ..+|..+...|...|++++|..++..+
T Consensus 609 -----gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~------Gv~-PD-~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 609 -----NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK------GVK-PD-EVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred -----CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCC-CC-HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 23445678999999999999999999999998765 211 22 457888999999999999999999998
Q ss_pred HHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004848 544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF 623 (727)
Q Consensus 544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 623 (727)
.+. +..+. ..+|..+...|.+.|++++|..+|++.... +. .+ ...+|+.|...|.+.|++++|+++|
T Consensus 676 ~k~-----G~~pd-~~tynsLI~ay~k~G~~eeA~~lf~eM~~~----g~-~P--dvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 676 RKQ-----GIKLG-TVSYSSLMGACSNAKNWKKALELYEDIKSI----KL-RP--TVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred HHc-----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CC--CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 754 22222 357889999999999999999999987542 11 12 2467999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 624 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
++.... +. .|+.. +|..+...+.+.|++++|..++.++++.
T Consensus 743 ~eM~~~-----Gi-~Pd~~-Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 743 SEMKRL-----GL-CPNTI-TYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHc-----CC-CCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 997653 21 45544 7778889999999999999999998764
No 42
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.85 E-value=1.1e-18 Score=197.92 Aligned_cols=372 Identities=15% Similarity=0.079 Sum_probs=288.3
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccch
Q 004848 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296 (727)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 296 (727)
.|+ ...+..+...|.+.|+ +++|.++|++.. .++ ..+|..+...|.+.|++++|+.+|++.+....
T Consensus 155 ~~~-~~~~n~Li~~y~k~g~-~~~A~~lf~~m~---------~~~---~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 220 (697)
T PLN03081 155 EPD-QYMMNRVLLMHVKCGM-LIDARRLFDEMP---------ERN---LASWGTIIGGLVDAGNYREAFALFREMWEDGS 220 (697)
T ss_pred Ccc-hHHHHHHHHHHhcCCC-HHHHHHHHhcCC---------CCC---eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 343 5567778889999997 888877777652 122 45688899999999999999999999875421
Q ss_pred hccCccch------------------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 004848 297 IEEGQEHA------------------------------LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD 346 (727)
Q Consensus 297 ~~~~~~~~------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 346 (727)
. ++.. .....++..|...|.+.|++++|...|++..
T Consensus 221 ~---p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----------- 286 (697)
T PLN03081 221 D---AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----------- 286 (697)
T ss_pred C---CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----------
Confidence 0 1000 0012235677889999999999999987642
Q ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 004848 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (727)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (727)
+....+|..+...|.+.|++++|+.+|++.....-. +. ..++..+...|...|++++|.+.+...++. +
T Consensus 287 ~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~----pd---~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~----g 355 (697)
T PLN03081 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS----ID---QFTFSIMIRIFSRLALLEHAKQAHAGLIRT----G 355 (697)
T ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CC---HHHHHHHHHHHHhccchHHHHHHHHHHHHh----C
Confidence 234578999999999999999999999988653211 11 246889999999999999999999877642 2
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q 004848 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (727)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (727)
. +....++..+...|.+.|++++|...|++..+ + ...+|..+...|.+.|+.++|+.+|++....
T Consensus 356 ~-~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~--- 420 (697)
T PLN03081 356 F-PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----------K-NLISWNALIAGYGNHGRGTKAVEMFERMIAE--- 420 (697)
T ss_pred C-CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 2 22345778899999999999999999987632 2 3468999999999999999999999998765
Q ss_pred CCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586 (727)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 586 (727)
+.. |+ ..++..+...+...|..++|..+|+...+.. +..+. ...|..+..+|.+.|++++|.+++++.
T Consensus 421 ---g~~-Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~----g~~p~-~~~y~~li~~l~r~G~~~eA~~~~~~~-- 488 (697)
T PLN03081 421 ---GVA-PN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENH----RIKPR-AMHYACMIELLGREGLLDEAYAMIRRA-- 488 (697)
T ss_pred ---CCC-CC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc----CCCCC-ccchHhHHHHHHhcCCHHHHHHHHHHC--
Confidence 211 22 4568888889999999999999999887643 22222 246788999999999999999887653
Q ss_pred HHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004848 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666 (727)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 666 (727)
... + ...+|..+...+...|+++.|...+++.+++ .|+....|..|+.+|...|++++|.+.++
T Consensus 489 -----~~~-p--~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--------~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 489 -----PFK-P--TVNMWAALLTACRIHKNLELGRLAAEKLYGM--------GPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred -----CCC-C--CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--------CCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 111 1 2457899999999999999999999998876 67767789999999999999999999999
Q ss_pred HHHH
Q 004848 667 FVVG 670 (727)
Q Consensus 667 ~al~ 670 (727)
...+
T Consensus 553 ~m~~ 556 (697)
T PLN03081 553 TLKR 556 (697)
T ss_pred HHHH
Confidence 8764
No 43
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.1e-17 Score=157.76 Aligned_cols=422 Identities=12% Similarity=0.042 Sum_probs=305.4
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-----------cCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 004848 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIG-----------ANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLE 289 (727)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~-----------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 289 (727)
...+..+....+.... |..|...|..++..-... ....+.+.........+.||...++-+.|+..+.
T Consensus 43 yqll~yl~~~~~h~r~-yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~ 121 (564)
T KOG1174|consen 43 YQVLLYLLNANYKERN-YRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLL 121 (564)
T ss_pred HHHHHHHHhhhHHHHH-HHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHh
Confidence 3344444444444443 666666666666543211 0111223445556778999999999999999888
Q ss_pred HhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--------------------------hC
Q 004848 290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV--------------------------LG 343 (727)
Q Consensus 290 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------~~ 343 (727)
...... ..|. ..+.++..+..-++..++.-.|...+..+.-. ..
T Consensus 122 ~~p~t~------r~p~----inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~ 191 (564)
T KOG1174|consen 122 QVPPTL------RSPR----INLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVP 191 (564)
T ss_pred cCCccc------cchh----HHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecC
Confidence 776542 1221 24455666665555545554444443321110 01
Q ss_pred CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI 423 (727)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 423 (727)
+..+....-...+|.++....-+.-+..++-+-....+.+ ...+..+|.+++..|++.+|+..|+++..
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~N--------vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--- 260 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCN--------EHLMMALGKCLYYNGDYFQAEDIFSSTLC--- 260 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCcc--------HHHHHHHhhhhhhhcCchHHHHHHHHHhh---
Confidence 1112222222334444444444444445554444444433 35588899999999999999999998864
Q ss_pred hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (727)
Q Consensus 424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (727)
.+|......-..|.++...|+++.-..+....+.+ ......-|+.-+.+.+...++..|+.+-+++++.
T Consensus 261 ---~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~--------~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~ 329 (564)
T KOG1174|consen 261 ---ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK--------VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS 329 (564)
T ss_pred ---CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh--------hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence 46777788888899999999999887777777766 3445666777788899999999999999999998
Q ss_pred HhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004848 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583 (727)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 583 (727)
.+....++...|.++..+|+.++|+-.|+.|..+.|-. ..+|..|-.+|...|.+.+|......
T Consensus 330 ---------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r-------L~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 330 ---------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR-------LEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred ---------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh-------HHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 33446788899999999999999999999999987654 47899999999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHH-HHHH-HhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHH
Q 004848 584 AISKLRAIGERKSAFFGVALNQMG-LACV-QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDA 661 (727)
Q Consensus 584 al~~~~~~~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 661 (727)
++..+.. .+.++..+| .++. .----++|.+++++++.+ .|....+-..+|.++...|.++++
T Consensus 394 ~~~~~~~--------sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 394 TIRLFQN--------SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--------NPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred HHHHhhc--------chhhhhhhcceeeccCchhHHHHHHHHHhhhcc--------CCccHHHHHHHHHHHHhhCccchH
Confidence 8887643 345666665 3433 333458999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 662 IEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 662 ~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+.++++++..+ |+ ...+..||.++...+.+.+|. .+|..||.+||+
T Consensus 458 i~LLe~~L~~~--------~D-~~LH~~Lgd~~~A~Ne~Q~am-~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 458 IKLLEKHLIIF--------PD-VNLHNHLGDIMRAQNEPQKAM-EYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHhhc--------cc-cHHHHHHHHHHHHhhhHHHHH-HHHHHHHhcCcc
Confidence 99999999863 33 457889999999999999999 999999999997
No 44
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.2e-17 Score=166.85 Aligned_cols=428 Identities=17% Similarity=0.175 Sum_probs=295.8
Q ss_pred cccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 004848 197 MKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYC 276 (727)
Q Consensus 197 ~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~ 276 (727)
....|+|..++..+.++...+|.+...+-++..++...|+ |++|++-..+.+++. |+++..|..+|..+.
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~-~~~al~da~k~~~l~---------p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGS-YEKALKDATKTRRLN---------PDWAKGYSRKGAALF 81 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhh-HHHHHHHHHHHHhcC---------CchhhHHHHhHHHHH
Confidence 3456778888888899999999999999999999999998 999999988888764 678899999999999
Q ss_pred HcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhC---------------------CHHHHHHHHHHHH
Q 004848 277 SLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG---------------------QLENSLMCYTTGL 335 (727)
Q Consensus 277 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------------------~~~~A~~~~~~al 335 (727)
-+|+|++|+..|.+.|+.. +... ..+..|+.++.... ++--....|...+
T Consensus 82 ~lg~~~eA~~ay~~GL~~d-----~~n~----~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKD-----PSNK----QLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred hcccHHHHHHHHHHHhhcC-----CchH----HHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 9999999999999999985 2222 12555555552110 0111112233333
Q ss_pred HHHHHHhCCCCchHHHHHHH-------HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC------------C------CHH
Q 004848 336 EVQKQVLGETDPRVGETCRY-------LAEAHVQALQFSEAQKFCQMALDIHKDNGSP------------A------SLE 390 (727)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------~------~~~ 390 (727)
+..++ .|.....+.+ ++.+.. .+.. ..+.......+....+ + ...
T Consensus 153 ~~~~~-----~p~~l~~~l~d~r~m~a~~~l~~-~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~ 222 (539)
T KOG0548|consen 153 EIIQK-----NPTSLKLYLNDPRLMKADGQLKG-VDEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKE 222 (539)
T ss_pred HHhhc-----CcHhhhcccccHHHHHHHHHHhc-Cccc----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHH
Confidence 33222 1211111111 111000 0000 0000000000000000 0 111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004848 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470 (727)
Q Consensus 391 ~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 470 (727)
.+.....+|...+...++..|+++|.+++.+. .....+.+.+-+|+..|.+.+.+..+..+++....... +.
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra-d~ 294 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA-------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA-DY 294 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH-HH
Confidence 34567789999999999999999999998753 44556788899999999999999998888876433211 12
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004848 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (727)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (727)
...+.++..+|..|...++++.|+.+|++++...+. ..+.......++++.......-+.+..
T Consensus 295 klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----------------~~~ls~lk~~Ek~~k~~e~~a~~~pe~ 357 (539)
T KOG0548|consen 295 KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----------------PDLLSKLKEAEKALKEAERKAYINPEK 357 (539)
T ss_pred HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----------------HHHHHHHHHHHHHHHHHHHHHhhChhH
Confidence 235566666888999999999999999998877433 233344445555555554433332222
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004848 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (727)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 630 (727)
+.-...-|..++..|+|..|+.+|.+++.. .+..+..|.+.|.||..+|.+..|+...+.++++
T Consensus 358 -------A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL- 421 (539)
T KOG0548|consen 358 -------AEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL- 421 (539)
T ss_pred -------HHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 444556699999999999999999998875 2446789999999999999999999999999998
Q ss_pred HHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 004848 631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET 710 (727)
Q Consensus 631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ 710 (727)
+|....+|..-|.++..+.+|++|++.|+++++. +|....+...+..++..+....... +..+.
T Consensus 422 -------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--------dp~~~e~~~~~~rc~~a~~~~~~~e-e~~~r 485 (539)
T KOG0548|consen 422 -------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--------DPSNAEAIDGYRRCVEAQRGDETPE-ETKRR 485 (539)
T ss_pred -------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHhhcCCCHH-HHHHh
Confidence 8999999999999999999999999999999976 6888888888888887754444444 44554
No 45
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.84 E-value=1.9e-17 Score=155.48 Aligned_cols=333 Identities=15% Similarity=0.121 Sum_probs=237.2
Q ss_pred CCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004848 260 PSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK 339 (727)
Q Consensus 260 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 339 (727)
.++..+.-...+|..++..|++..|+..|..|++.. + ....+++..|.+|..+|+-.-|+.-+.+++++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~d-----p----~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-- 101 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGD-----P----NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-- 101 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-----c----hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--
Confidence 345556678889999999999999999999999885 2 23446889999999999999999999999999
Q ss_pred HHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004848 340 QVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLAS 419 (727)
Q Consensus 340 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al 419 (727)
.|+...+....|.+++++|++++|..-|..+|...+..... -.+...++.+
T Consensus 102 ------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~-----~eaqskl~~~------------------ 152 (504)
T KOG0624|consen 102 ------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLV-----LEAQSKLALI------------------ 152 (504)
T ss_pred ------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchh-----HHHHHHHHhH------------------
Confidence 79999999999999999999999999999999877655321 0011111110
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004848 420 MTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN 499 (727)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 499 (727)
.....+......++..|++..|+.+....+++ .|..+..+...+.+|...|+...|+.-+..
T Consensus 153 ----------~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ 214 (504)
T KOG0624|consen 153 ----------QEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPWDASLRQARAKCYIAEGEPKKAIHDLKQ 214 (504)
T ss_pred ----------HHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 01122333445566778888888888888887 688888888888888888888888888888
Q ss_pred HHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccH---HHH--HHHHHHHHHHcCCH
Q 004848 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTV---AGI--EAQMGVMYYMLGNY 574 (727)
Q Consensus 500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~--~~~la~~~~~~g~~ 574 (727)
+-++. .+....++.++.+++..|+.+.++...++++++.++.....+.. -.+ ...-+......++|
T Consensus 215 askLs---------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~ 285 (504)
T KOG0624|consen 215 ASKLS---------QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHW 285 (504)
T ss_pred HHhcc---------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 87772 22356678888888888888888888888888766541110000 000 00112223345566
Q ss_pred HHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 004848 575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654 (727)
Q Consensus 575 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 654 (727)
.+++...++.++.- +............+..|+..-|++.+|+....+++++ +|+.+.++...|.+|..
T Consensus 286 t~cle~ge~vlk~e----p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--------d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 286 TECLEAGEKVLKNE----PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--------DPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHHHHHHHhcC----CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHhh
Confidence 66666666555431 1112222344556677777778888888888888887 78888888888888888
Q ss_pred cCChHHHHHHHHHHHHH
Q 004848 655 IGRLDDAIEILEFVVGI 671 (727)
Q Consensus 655 ~g~~~~A~~~~~~al~~ 671 (727)
...|+.|+.-|++|.+.
T Consensus 354 dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALEL 370 (504)
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 88888888888888765
No 46
>PLN03077 Protein ECB2; Provisional
Probab=99.83 E-value=2.3e-17 Score=191.96 Aligned_cols=427 Identities=14% Similarity=0.057 Sum_probs=276.3
Q ss_pred cccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH------------------------
Q 004848 197 MKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSF------------------------ 252 (727)
Q Consensus 197 ~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~------------------------ 252 (727)
+.+.|+...|...+.+....+ ...|..+...|.+.|+ +++|+++|.+....-
T Consensus 232 y~k~g~~~~A~~lf~~m~~~d---~~s~n~li~~~~~~g~-~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMPRRD---CISWNAMISGYFENGE-CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HhcCCCHHHHHHHHhcCCCCC---cchhHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 344455555554555544332 3467777888999997 999999988865420
Q ss_pred ----HHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHH
Q 004848 253 ----EIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSL 328 (727)
Q Consensus 253 ----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 328 (727)
.......-.| ....+..+...|.+.|++++|..+|++.... ...+|..+...|.+.|++++|+
T Consensus 308 ~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~------------d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 308 REMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMETK------------DAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred HHHHHHHHHhCCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCCCC------------CeeeHHHHHHHHHhCCCHHHHH
Confidence 0000000001 1334566667777777777777777765421 1123666777777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCH
Q 004848 329 MCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDH 408 (727)
Q Consensus 329 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~ 408 (727)
.+|++..+.. -.|+. .++..+-..+...|++++|.+++..+++...... ..++..+...|.+.|++
T Consensus 375 ~lf~~M~~~g------~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~-------~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 375 ETYALMEQDN------VSPDE-ITIASVLSACACLGDLDVGVKLHELAERKGLISY-------VVVANALIEMYSKCKCI 440 (857)
T ss_pred HHHHHHHHhC------CCCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcc-------hHHHHHHHHHHHHcCCH
Confidence 7777664431 01222 3344444456666777777776666654322111 24567777888888888
Q ss_pred HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH--------------
Q 004848 409 EAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA-------------- 474 (727)
Q Consensus 409 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-------------- 474 (727)
++|.+.|++.. .+ ....|..+...|...|++++|+..|++.+.. . .|+..
T Consensus 441 ~~A~~vf~~m~--------~~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~----~---~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 441 DKALEVFHNIP--------EK-DVISWTSIIAGLRLNNRCFEALIFFRQMLLT----L---KPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHHhCC--------CC-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC----C---CCCHhHHHHHHHHHhhhch
Confidence 88888887542 11 2246777778888888888888888877531 1 12211
Q ss_pred --------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHH
Q 004848 475 --------------------SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE 534 (727)
Q Consensus 475 --------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 534 (727)
.++..|...|.+.|++++|...|+.. .. ...+|+.+...|...|+.+
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~---------d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EK---------DVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CC---------ChhhHHHHHHHHHHcCCHH
Confidence 12233446677777777777776653 11 2456888888888999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC
Q 004848 535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY 614 (727)
Q Consensus 535 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 614 (727)
+|+.+|++..+. +..+. ..++..+-..+.+.|++++|..+|+...+.. + ..+ ....|..+..++.+.|
T Consensus 572 ~A~~lf~~M~~~-----g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~---g-i~P--~~~~y~~lv~~l~r~G 639 (857)
T PLN03077 572 MAVELFNRMVES-----GVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKY---S-ITP--NLKHYACVVDLLGRAG 639 (857)
T ss_pred HHHHHHHHHHHc-----CCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHh---C-CCC--chHHHHHHHHHHHhCC
Confidence 999998887653 21211 1345556667888899999999888776432 1 111 2367888888999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004848 615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694 (727)
Q Consensus 615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~ 694 (727)
++++|.+++++.- + .|+. .+|..|-..+...|+.+.|....++++++ .|+....+..|+.+|
T Consensus 640 ~~~eA~~~~~~m~-~--------~pd~-~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--------~p~~~~~y~ll~n~y 701 (857)
T PLN03077 640 KLTEAYNFINKMP-I--------TPDP-AVWGALLNACRIHRHVELGELAAQHIFEL--------DPNSVGYYILLCNLY 701 (857)
T ss_pred CHHHHHHHHHHCC-C--------CCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCcchHHHHHHHH
Confidence 9999988887752 2 4553 46677777778888888888888888776 577788899999999
Q ss_pred HHhCChhHHHHHHHHHHHHH
Q 004848 695 KEAGRVRSRKAQSLETLLDA 714 (727)
Q Consensus 695 ~~~g~~~~A~~~~l~~al~~ 714 (727)
...|++++|. +..+...+.
T Consensus 702 a~~g~~~~a~-~vr~~M~~~ 720 (857)
T PLN03077 702 ADAGKWDEVA-RVRKTMREN 720 (857)
T ss_pred HHCCChHHHH-HHHHHHHHc
Confidence 9999999999 877766554
No 47
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.82 E-value=7.1e-16 Score=182.02 Aligned_cols=421 Identities=15% Similarity=0.059 Sum_probs=306.4
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhcc
Q 004848 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 299 (727)
....+...+..+...|+ +.+|+.++..+-. .......+...+..+...|++..+..++..+-...
T Consensus 340 ~~~lh~raa~~~~~~g~-~~~Al~~a~~a~d----------~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~---- 404 (903)
T PRK04841 340 LPELHRAAAEAWLAQGF-PSEAIHHALAAGD----------AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEV---- 404 (903)
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHHCCC----------HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH----
Confidence 34455556666677776 7777776554421 13345566677888888999998888776542110
Q ss_pred CccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004848 300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD-PRVGETCRYLAEAHVQALQFSEAQKFCQMALD 378 (727)
Q Consensus 300 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 378 (727)
...++. .....+.++...|++++|..++..+...........+ .....+...++.++...|++++|..++++++.
T Consensus 405 ~~~~~~----l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 480 (903)
T PRK04841 405 LLENPR----LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALA 480 (903)
T ss_pred HhcCcc----hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 111121 2456788888999999999999988766432110001 12345566788899999999999999999988
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848 379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (727)
Q Consensus 379 ~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (727)
..+.. .....+.++..+|.++...|++++|..++.+++......+.......++..+|.++...|++++|..+++++
T Consensus 481 ~~~~~---~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 557 (903)
T PRK04841 481 ELPLT---WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKA 557 (903)
T ss_pred cCCCc---cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 53321 222344567889999999999999999999999888877766666778899999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHH
Q 004848 459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538 (727)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (727)
+.+.....+...+.....+..+|.++...|++++|...+.+++.+..... .......+..++.++...|++++|..
T Consensus 558 l~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~la~~~~~~G~~~~A~~ 633 (903)
T PRK04841 558 FQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ----PQQQLQCLAMLAKISLARGDLDNARR 633 (903)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC----chHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99988765443444555677889999999999999999999999876531 22345677789999999999999999
Q ss_pred HHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHH
Q 004848 539 LLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSIN 617 (727)
Q Consensus 539 ~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 617 (727)
.+.++..+.... +... ............+...|+.+.|..++...... ...........+..++.++...|+++
T Consensus 634 ~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~----~~~~~~~~~~~~~~~a~~~~~~g~~~ 708 (903)
T PRK04841 634 YLNRLENLLGNG-RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP----EFANNHFLQGQWRNIARAQILLGQFD 708 (903)
T ss_pred HHHHHHHHHhcc-cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC----CCccchhHHHHHHHHHHHHHHcCCHH
Confidence 999999876654 2111 11111111234556688999988887664431 00111112334567899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004848 618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (727)
Q Consensus 618 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (727)
+|..++++++........ ....+.++..+|.++...|+.++|...+.+++.+..
T Consensus 709 ~A~~~l~~al~~~~~~g~--~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 709 EAEIILEELNENARSLRL--MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 999999999998665433 345667889999999999999999999999999864
No 48
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.80 E-value=1.1e-16 Score=166.20 Aligned_cols=413 Identities=15% Similarity=0.109 Sum_probs=306.2
Q ss_pred ccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHHHHcCChh
Q 004848 204 LHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSL-ELVMCLHVIAAIYCSLGQYN 282 (727)
Q Consensus 204 ~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~ 282 (727)
....+.|++....--.....|...+..+...|. -..|+.+.+..+.. .+.| +....+..-..|+.+.+.++
T Consensus 340 ~~lae~fE~~~~~~~~~~e~w~~~als~saag~-~s~Av~ll~~~~~~-------~~~ps~~s~~Lmasklc~e~l~~~e 411 (799)
T KOG4162|consen 340 EVLAEQFEQALPFSFGEHERWYQLALSYSAAGS-DSKAVNLLRESLKK-------SEQPSDISVLLMASKLCIERLKLVE 411 (799)
T ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc-chHHHHHHHhhccc-------ccCCCcchHHHHHHHHHHhchhhhh
Confidence 344456666666667778889999999999997 56666665555543 2222 22334444456667789999
Q ss_pred HHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHHHhCCCCchHHH
Q 004848 283 EAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG-----------QLENSLMCYTTGLEVQKQVLGETDPRVGE 351 (727)
Q Consensus 283 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 351 (727)
+++.|..+++...... .......++..+|.+|..+- ...++++.+++|++. +|....
T Consensus 412 egldYA~kai~~~~~~----~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~--------d~~dp~ 479 (799)
T KOG4162|consen 412 EGLDYAQKAISLLGGQ----RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF--------DPTDPL 479 (799)
T ss_pred hHHHHHHHHHHHhhhh----hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc--------CCCCch
Confidence 9999999999865222 22233456778888876543 245677777777777 677778
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH
Q 004848 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV 431 (727)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 431 (727)
+.++++.-|..+++.+.|..+.++++++.+... +.+|..++.++...+++.+|+...+-++..... .
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~-------~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~------N 546 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDS-------AKAWHLLALVLSAQKRLKEALDVVDAALEEFGD------N 546 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh------h
Confidence 999999999999999999999999999965443 467999999999999999999999988754322 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC--
Q 004848 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH-PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV-- 508 (727)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-- 508 (727)
.........+-...++.++|+..+...+.+++...+-.. -.........+.+.....+..+|+..+.++..+.....
T Consensus 547 ~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~ 626 (799)
T KOG4162|consen 547 HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS 626 (799)
T ss_pred hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence 222223334445589999999999999999885432110 01222333334455556677777777777666543211
Q ss_pred -------------CCCC--hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCC
Q 004848 509 -------------PGVP--PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573 (727)
Q Consensus 509 -------------~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 573 (727)
++.+ .......|...+..+...++.++|..++.++-.+.+-. +.+|+..|.++...|+
T Consensus 627 ~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~-------~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 627 AGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS-------ASVYYLRGLLLEVKGQ 699 (799)
T ss_pred cccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh-------HHHHHHhhHHHHHHHh
Confidence 1111 12234567788899999999999999999998887544 6889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHH--HHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004848 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVE--LFEEARSILEQECGPYHPDTLGVYSNLAGT 651 (727)
Q Consensus 574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 651 (727)
+.+|...|..|+.+. +....+...+|.++.+.|+..-|.. ++..++++ +|....+|+.||.+
T Consensus 700 ~~EA~~af~~Al~ld--------P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--------dp~n~eaW~~LG~v 763 (799)
T KOG4162|consen 700 LEEAKEAFLVALALD--------PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--------DPLNHEAWYYLGEV 763 (799)
T ss_pred hHHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--------CCCCHHHHHHHHHH
Confidence 999999999999872 2234678889999999999888888 99999999 99999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHHH
Q 004848 652 YDAIGRLDDAIEILEFVVGIR 672 (727)
Q Consensus 652 ~~~~g~~~~A~~~~~~al~~~ 672 (727)
+..+|+.++|.++|..|+++-
T Consensus 764 ~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 764 FKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHccchHHHHHHHHHHHhhc
Confidence 999999999999999999874
No 49
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=3.8e-18 Score=159.08 Aligned_cols=284 Identities=14% Similarity=0.132 Sum_probs=236.4
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004848 359 AHVQALQFSEAQKFCQMALDIHKDNGSP--ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDC 436 (727)
Q Consensus 359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 436 (727)
+++..++...|-..+...+++....... .-......-..+|.||.++|-+.+|...++.++.. ......+.
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q-------~~~~dTfl 260 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ-------FPHPDTFL 260 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc-------CCchhHHH
Confidence 3455566677766666666554332221 11222234567999999999999999999988752 23446778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhH
Q 004848 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516 (727)
Q Consensus 437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 516 (727)
.|+.+|....+...|+..+.+.++. .|.....+..+|.++..++++++|.++|+.+++. ++..
T Consensus 261 lLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~---------~~~n 323 (478)
T KOG1129|consen 261 LLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL---------HPIN 323 (478)
T ss_pred HHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc---------CCcc
Confidence 8999999999999999999999987 6888999999999999999999999999999998 4555
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004848 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596 (727)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 596 (727)
.++...+|.-|+..++.+-|+.+|++.+++--.. ...+.++|.|++..++++-++..|++|+..... +
T Consensus 324 vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s-------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~-----~ 391 (478)
T KOG1129|consen 324 VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS-------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-----P 391 (478)
T ss_pred ceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC-------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC-----c
Confidence 6777788899999999999999999999986555 478899999999999999999999999987543 3
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 004848 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL 676 (727)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 676 (727)
...+.+|+++|.+....|++.-|..+|+-++.. +++...++.+||.+-.+.|+.++|..++..|-..
T Consensus 392 ~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--------d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~----- 458 (478)
T KOG1129|consen 392 GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--------DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV----- 458 (478)
T ss_pred chhhhhhhccceeEEeccchHHHHHHHHHHhcc--------CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh-----
Confidence 446789999999999999999999999999987 8999999999999999999999999999998866
Q ss_pred CCCChhHHHHHHHHHHHH
Q 004848 677 GTANPDVDDEKRRLAELL 694 (727)
Q Consensus 677 g~~~p~~~~~~~~La~~~ 694 (727)
.|+..+..++|+.+-
T Consensus 459 ---~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 459 ---MPDMAEVTTNLQFMS 473 (478)
T ss_pred ---CccccccccceeEEe
Confidence 577777777766543
No 50
>PLN03077 Protein ECB2; Provisional
Probab=99.80 E-value=3.1e-16 Score=182.59 Aligned_cols=428 Identities=16% Similarity=0.098 Sum_probs=256.4
Q ss_pred cccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCH----------------
Q 004848 199 KRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSL---------------- 262 (727)
Q Consensus 199 ~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~---------------- 262 (727)
+.|+...+.+.+.+... .....|..+...+.+.|+ +++|+..|.+....- -.|+.
T Consensus 133 ~~g~~~~A~~~f~~m~~---~d~~~~n~li~~~~~~g~-~~~A~~~f~~M~~~g-----~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 133 RFGELVHAWYVFGKMPE---RDLFSWNVLVGGYAKAGY-FDEALCLYHRMLWAG-----VRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred hCCChHHHHHHHhcCCC---CCeeEHHHHHHHHHhCCC-HHHHHHHHHHHHHcC-----CCCChhHHHHHHHHhCCccch
Confidence 33443334434444433 234577888889999997 999999998865320 01110
Q ss_pred ----------------HHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHH
Q 004848 263 ----------------ELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLEN 326 (727)
Q Consensus 263 ----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 326 (727)
.....+..+...|.+.|++++|..+|++..... ..+|..+...|.+.|++++
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d------------~~s~n~li~~~~~~g~~~e 271 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD------------CISWNAMISGYFENGECLE 271 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCC------------cchhHHHHHHHHhCCCHHH
Confidence 012345667788999999999999999865321 2248888889999999999
Q ss_pred HHHHHHHHHHHHHH----------------------------HhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004848 327 SLMCYTTGLEVQKQ----------------------------VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD 378 (727)
Q Consensus 327 A~~~~~~al~~~~~----------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 378 (727)
|+.+|.+....... .....-.....++..|...|.+.|++++|.++|++...
T Consensus 272 Al~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 351 (857)
T PLN03077 272 GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Confidence 99999887654100 00000011223444555555555555555555554321
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848 379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (727)
Q Consensus 379 ~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (727)
. + ..+|+.+...|.+.|++++|+.+|.+... .+..|+. .++..+-..+...|++++|..++..+
T Consensus 352 ~-----d------~~s~n~li~~~~~~g~~~~A~~lf~~M~~----~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~ 415 (857)
T PLN03077 352 K-----D------AVSWTAMISGYEKNGLPDKALETYALMEQ----DNVSPDE-ITIASVLSACACLGDLDVGVKLHELA 415 (857)
T ss_pred C-----C------eeeHHHHHHHHHhCCCHHHHHHHHHHHHH----hCCCCCc-eeHHHHHHHHhccchHHHHHHHHHHH
Confidence 0 0 12355555555566666666655554322 1222222 22333334555556666666655555
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHH
Q 004848 459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538 (727)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (727)
++. .......++..|...|.+.|++++|...|++..+. ...+|+.+...|...|++++|+.
T Consensus 416 ~~~-------g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~------------d~vs~~~mi~~~~~~g~~~eA~~ 476 (857)
T PLN03077 416 ERK-------GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK------------DVISWTSIIAGLRLNNRCFEALI 476 (857)
T ss_pred HHh-------CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC------------CeeeHHHHHHHHHHCCCHHHHHH
Confidence 443 12234556777778888888888888777653211 13467777888888888888888
Q ss_pred HHHHHHHHHHhCCCCCccHHH-------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848 539 LLQKALKIYNDAPGQQSTVAG-------------------------------IEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (727)
Q Consensus 539 ~~~~al~~~~~~~~~~~~~~~-------------------------------~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (727)
+|++.+.. ...+...+.. ++..+...|.+.|+.++|...|+..
T Consensus 477 lf~~m~~~---~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--- 550 (857)
T PLN03077 477 FFRQMLLT---LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--- 550 (857)
T ss_pred HHHHHHhC---CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---
Confidence 88887642 1111111100 1123446677777777777766553
Q ss_pred HHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004848 588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEF 667 (727)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 667 (727)
.. ...+|+.+...|...|+.++|+++|++..+. +. .|+.. ++..+-..+.+.|++++|..+|+.
T Consensus 551 -----~~----d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g~-~Pd~~-T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 551 -----EK----DVVSWNILLTGYVAHGKGSMAVELFNRMVES-----GV-NPDEV-TFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred -----CC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCCcc-cHHHHHHHHhhcChHHHHHHHHHH
Confidence 11 2457888888888999999999998887653 11 34433 455666677888888888888887
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 004848 668 VVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL 711 (727)
Q Consensus 668 al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a 711 (727)
..... ...|+ ...|..+..+|.+.|++++|. +.+++.
T Consensus 615 M~~~~-----gi~P~-~~~y~~lv~~l~r~G~~~eA~-~~~~~m 651 (857)
T PLN03077 615 MEEKY-----SITPN-LKHYACVVDLLGRAGKLTEAY-NFINKM 651 (857)
T ss_pred HHHHh-----CCCCc-hHHHHHHHHHHHhCCCHHHHH-HHHHHC
Confidence 76332 12333 356777777777777777777 766653
No 51
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.79 E-value=6.4e-15 Score=173.96 Aligned_cols=423 Identities=15% Similarity=0.036 Sum_probs=302.8
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Q 004848 264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG 343 (727)
Q Consensus 264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 343 (727)
....+...+..+...|++.+|+.++..+-.. ......+...+..+...|++..+..++..+-... .
T Consensus 340 ~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~----------~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~----~ 405 (903)
T PRK04841 340 LPELHRAAAEAWLAQGFPSEAIHHALAAGDA----------QLLRDILLQHGWSLFNQGELSLLEECLNALPWEV----L 405 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCH----------HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH----H
Confidence 3455666677788899999998877765322 1233456667888888899887777665431110 0
Q ss_pred CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP-ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM 422 (727)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 422 (727)
..+|. .....+.++...|++++|..++..+.......... .......+...++.++...|++++|..++++++...
T Consensus 406 ~~~~~---l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 482 (903)
T PRK04841 406 LENPR---LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL 482 (903)
T ss_pred hcCcc---hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 11233 34567778889999999999999987765432211 112234556678899999999999999999988642
Q ss_pred HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502 (727)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (727)
.. ........++..+|.++...|++++|..++++++........ ......++..+|.++...|++++|..++++++.
T Consensus 483 ~~-~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~--~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 559 (903)
T PRK04841 483 PL-TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV--YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQ 559 (903)
T ss_pred CC-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc--hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 21 222334556788999999999999999999999998776542 233456788999999999999999999999999
Q ss_pred HHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004848 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK 582 (727)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 582 (727)
+..... ....+.....+..+|.++...|++++|...+.+++.+.... + .......+..++.++...|++++|...+.
T Consensus 560 ~~~~~~-~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~ 636 (903)
T PRK04841 560 LIEEQH-LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY-Q-PQQQLQCLAMLAKISLARGDLDNARRYLN 636 (903)
T ss_pred HHHHhc-cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc-C-chHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 987642 11223334456778999999999999999999999987644 2 22345567789999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHH
Q 004848 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI 662 (727)
Q Consensus 583 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 662 (727)
++..+....... ..............+...|+.+.|..++....... .+. .......+..++.++...|++++|.
T Consensus 637 ~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~---~~~-~~~~~~~~~~~a~~~~~~g~~~~A~ 711 (903)
T PRK04841 637 RLENLLGNGRYH-SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE---FAN-NHFLQGQWRNIARAQILLGQFDEAE 711 (903)
T ss_pred HHHHHHhccccc-HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC---Ccc-chhHHHHHHHHHHHHHHcCCHHHHH
Confidence 998876553211 11011111112344556889999988876654310 010 1112223568999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 663 EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 663 ~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
..+++++...... + .......++..+|.++...|+.++|. ..+.+++++...
T Consensus 712 ~~l~~al~~~~~~-g-~~~~~a~~~~~la~a~~~~G~~~~A~-~~L~~Al~la~~ 763 (903)
T PRK04841 712 IILEELNENARSL-R-LMSDLNRNLILLNQLYWQQGRKSEAQ-RVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHh-C-chHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhCc
Confidence 9999999886543 2 23466778899999999999999999 999999988754
No 52
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.78 E-value=9.1e-15 Score=148.64 Aligned_cols=428 Identities=14% Similarity=0.033 Sum_probs=323.3
Q ss_pred cccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 004848 211 SEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQ 290 (727)
Q Consensus 211 ~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 290 (727)
..+...-|...+.|+.+++.- - |+.|...+.+|-+.++. ++. +|..-+.+--..|+.+....+..+
T Consensus 400 ~rAveccp~s~dLwlAlarLe----t-YenAkkvLNkaRe~ipt------d~~---IWitaa~LEE~ngn~~mv~kii~r 465 (913)
T KOG0495|consen 400 ERAVECCPQSMDLWLALARLE----T-YENAKKVLNKAREIIPT------DRE---IWITAAKLEEANGNVDMVEKIIDR 465 (913)
T ss_pred HHHHHhccchHHHHHHHHHHH----H-HHHHHHHHHHHHhhCCC------Chh---HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 344455677777887776543 2 77777777777665432 122 233344444555555555544444
Q ss_pred hcccchhc----------------------------------cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004848 291 SIEIPVIE----------------------------------EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE 336 (727)
Q Consensus 291 al~~~~~~----------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 336 (727)
++...... .+.+. ......|..-+..+...+.++-|+..|..+++
T Consensus 466 gl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe-ed~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 466 GLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE-EDRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred HHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc-chhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 43321100 01111 11234577778888889999999999999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004848 337 VQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLV 416 (727)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~ 416 (727)
. .|..-.+|...+.+-..-|..+.-..++++++...|+.. ..|...+..+...|+...|...+.
T Consensus 545 v--------fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae--------~lwlM~ake~w~agdv~~ar~il~ 608 (913)
T KOG0495|consen 545 V--------FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE--------ILWLMYAKEKWKAGDVPAARVILD 608 (913)
T ss_pred h--------ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch--------hHHHHHHHHHHhcCCcHHHHHHHH
Confidence 8 577778888888888888999999999999999887654 347777888899999999999998
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHH
Q 004848 417 LASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSY 496 (727)
Q Consensus 417 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 496 (727)
++... .|..-.+|+.--.+.+...+++.|..+|.++... .....+|+.-+.+...+++.++|+.+
T Consensus 609 ~af~~------~pnseeiwlaavKle~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 609 QAFEA------NPNSEEIWLAAVKLEFENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred HHHHh------CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 88753 4445567777777888899999999999998775 44568888889999999999999999
Q ss_pred HHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHH
Q 004848 497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD 576 (727)
Q Consensus 497 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 576 (727)
++++++.+ |.....|..+|+++..+++.+.|.+.|...++.+|.. ...|..++.+-.+.|+.-.
T Consensus 674 lEe~lk~f---------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~-------ipLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 674 LEEALKSF---------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS-------IPLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred HHHHHHhC---------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC-------chHHHHHHHHHHHhcchhh
Confidence 99999994 4567889999999999999999999999988887766 3578889999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc--------CCC-----------
Q 004848 577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC--------GPY----------- 637 (727)
Q Consensus 577 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~----------- 637 (727)
|...++++.-. .+.....|....++-++.|+.+.|..+..+|++-+.... -..
T Consensus 738 AR~ildrarlk--------NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DA 809 (913)
T KOG0495|consen 738 ARSILDRARLK--------NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDA 809 (913)
T ss_pred HHHHHHHHHhc--------CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHH
Confidence 99999887643 222456777777888899999999999999887533210 000
Q ss_pred ---CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004848 638 ---HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (727)
Q Consensus 638 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (727)
......++..+|.++....++++|.++|.+++.+ +|++.+++..+-..+...|.-++-. +.|.+....
T Consensus 810 Lkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~eed~k-ev~~~c~~~ 880 (913)
T KOG0495|consen 810 LKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEEDQK-EVLKKCETA 880 (913)
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHHHHH-HHHHHHhcc
Confidence 1112346778899999999999999999999987 6888999999999999999999988 999999888
Q ss_pred hhh
Q 004848 715 NSR 717 (727)
Q Consensus 715 ~p~ 717 (727)
.|.
T Consensus 881 EP~ 883 (913)
T KOG0495|consen 881 EPT 883 (913)
T ss_pred CCC
Confidence 886
No 53
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.78 E-value=2.6e-15 Score=141.19 Aligned_cols=327 Identities=15% Similarity=0.097 Sum_probs=238.5
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhccc
Q 004848 215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294 (727)
Q Consensus 215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (727)
..+|..+.-.+.+|..++..|+ +..|+..|..|++. +|....+++..|.+|..+|+-.-|+..+.+++++
T Consensus 32 ~~~~advekhlElGk~lla~~Q-~sDALt~yHaAve~---------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel 101 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQ-LSDALTHYHAAVEG---------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL 101 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHcC---------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc
Confidence 3567788889999999999998 99999999999874 3667888999999999999999999999999998
Q ss_pred chhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCch---HHHHHHHHHHHHHHhcCHHHHHH
Q 004848 295 PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR---VGETCRYLAEAHVQALQFSEAQK 371 (727)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~ 371 (727)
. ++ ...+....|.++.++|.+++|..-|..+++. +|. ..+++..++.+-.
T Consensus 102 K-----pD----F~~ARiQRg~vllK~Gele~A~~DF~~vl~~--------~~s~~~~~eaqskl~~~~e---------- 154 (504)
T KOG0624|consen 102 K-----PD----FMAARIQRGVVLLKQGELEQAEADFDQVLQH--------EPSNGLVLEAQSKLALIQE---------- 154 (504)
T ss_pred C-----cc----HHHHHHHhchhhhhcccHHHHHHHHHHHHhc--------CCCcchhHHHHHHHHhHHH----------
Confidence 6 22 3345788999999999999999999999987 342 2222222221100
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004848 372 FCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA 451 (727)
Q Consensus 372 ~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 451 (727)
-..+......+...|++..|+++....+. ..|..+..+...+.||...|+...|
T Consensus 155 --------------------~~~l~~ql~s~~~~GD~~~ai~~i~~llE------i~~Wda~l~~~Rakc~i~~~e~k~A 208 (504)
T KOG0624|consen 155 --------------------HWVLVQQLKSASGSGDCQNAIEMITHLLE------IQPWDASLRQARAKCYIAEGEPKKA 208 (504)
T ss_pred --------------------HHHHHHHHHHHhcCCchhhHHHHHHHHHh------cCcchhHHHHHHHHHHHhcCcHHHH
Confidence 01133344455566777777777776654 3456666777777788888888888
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHH--------
Q 004848 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV-------- 523 (727)
Q Consensus 452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l-------- 523 (727)
+..++.+-++ ..+....++.++.+++..|+.+.++...++++++ ..++..-...|-.+
T Consensus 209 I~Dlk~askL--------s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl------dpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 209 IHDLKQASKL--------SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL------DPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHHHHHHhc--------cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc------CcchhhHHHHHHHHHHHHHHHH
Confidence 7777777666 5566677777777888888887777777777776 22232222222222
Q ss_pred -HHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHH
Q 004848 524 -SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVA 602 (727)
Q Consensus 524 -a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 602 (727)
+.-....++|.++++..++.++..+.. ..........+..|+...|++.+|+....+++++ .+..+.+
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~---~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--------d~~dv~~ 343 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEE---TMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--------DPDDVQV 343 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcc---cceeeeeeheeeecccccCCHHHHHHHHHHHHhc--------CchHHHH
Confidence 223345567777777777776654432 1222334556788899999999999999999986 3345789
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848 603 LNQMGLACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 603 ~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (727)
+...|.+|+....|+.|+.-|++|.+.
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=155.94 Aligned_cols=283 Identities=16% Similarity=0.125 Sum_probs=235.8
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHhCCCCch--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 004848 317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPR--VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAAD 394 (727)
Q Consensus 317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~ 394 (727)
+|+...+...|-......+++........... .......+|.||+.+|-+.+|.+.++.++...+-. ..
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~---------dT 258 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP---------DT 258 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch---------hH
Confidence 45556667777666666666654432222222 22334678999999999999999999999876433 46
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004848 395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA 474 (727)
Q Consensus 395 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 474 (727)
+..|+.+|.+..+...|+..|.+.+. ..|.....+..++.++..++++++|.++|+.+++. ++...
T Consensus 259 fllLskvY~ridQP~~AL~~~~~gld------~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nv 324 (478)
T KOG1129|consen 259 FLLLSKVYQRIDQPERALLVIGEGLD------SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINV 324 (478)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhhh------cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccc
Confidence 88999999999999999999988864 46777888899999999999999999999999998 88888
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCC
Q 004848 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ 554 (727)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 554 (727)
.+.-.+|.-|+..++.+-|+.+|++.+.+ |... .+.+.++|.+.+..++++-++..|++|+..... +
T Consensus 325 EaiAcia~~yfY~~~PE~AlryYRRiLqm------G~~s---peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~----~ 391 (478)
T KOG1129|consen 325 EAIACIAVGYFYDNNPEMALRYYRRILQM------GAQS---PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ----P 391 (478)
T ss_pred eeeeeeeeccccCCChHHHHHHHHHHHHh------cCCC---hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC----c
Confidence 99889999999999999999999999999 3333 457899999999999999999999999988643 3
Q ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004848 555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634 (727)
Q Consensus 555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 634 (727)
...+.+|+++|.+....|++.-|..+|+-++.- +...+.++++||.+..+.|+.++|..++..|-..
T Consensus 392 ~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--------d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~----- 458 (478)
T KOG1129|consen 392 GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--------DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV----- 458 (478)
T ss_pred chhhhhhhccceeEEeccchHHHHHHHHHHhcc--------CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh-----
Confidence 345789999999999999999999999988863 4456899999999999999999999999999988
Q ss_pred CCCCccHHHHHHHHHHH
Q 004848 635 GPYHPDTLGVYSNLAGT 651 (727)
Q Consensus 635 ~~~~~~~~~~~~~la~~ 651 (727)
.|+..+..++++.+
T Consensus 459 ---~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 459 ---MPDMAEVTTNLQFM 472 (478)
T ss_pred ---CccccccccceeEE
Confidence 78877777776654
No 55
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.3e-15 Score=145.08 Aligned_cols=289 Identities=12% Similarity=0.094 Sum_probs=238.4
Q ss_pred CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 004848 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN 425 (727)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 425 (727)
-+.....+..+|.+++..|++++|+..|+++.-+.|... ...-..|.++...|++++-..+....+.+
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i--------~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~---- 295 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV--------EAMDLYAVLLGQEGGCEQDSALMDYLFAK---- 295 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh--------hhHHHHHHHHHhccCHhhHHHHHHHHHhh----
Confidence 477889999999999999999999999999998876653 44667788888999998877665544432
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004848 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (727)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (727)
....+.-|+.-+...+...++..|+.+-++++.. ++....++...|.++...++.++|+-.|+.|..+
T Consensus 296 --~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-- 363 (564)
T KOG1174|consen 296 --VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQML-- 363 (564)
T ss_pred --hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhc--
Confidence 2223345566678888999999999999999998 7888999999999999999999999999999988
Q ss_pred cCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH-HHHH-HcCCHHHHHHHHHH
Q 004848 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG-VMYY-MLGNYSDSYDSFKN 583 (727)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~ 583 (727)
.|....+|..|..+|...|++.+|......++...+.. +.++..+| .+++ .-.--++|.+++++
T Consensus 364 -------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s-------A~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 364 -------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS-------ARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred -------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc-------hhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 45668899999999999999999999999999998876 45555564 3333 33345789999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHH
Q 004848 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663 (727)
Q Consensus 584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 663 (727)
++.+ .+.+..+-..+|.++...|.++.++.++++++.. .++.. .+..||.++...+.+.+|..
T Consensus 430 ~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--------~~D~~-LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 430 SLKI--------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--------FPDVN-LHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred hhcc--------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--------ccccH-HHHHHHHHHHHhhhHHHHHH
Confidence 9886 3445677888999999999999999999999997 56544 78999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHh
Q 004848 664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA 697 (727)
Q Consensus 664 ~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~ 697 (727)
+|..|+.+ +|....++..|-.+-...
T Consensus 493 ~y~~ALr~--------dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 493 YYYKALRQ--------DPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred HHHHHHhc--------CccchHHHHHHHHHHhcc
Confidence 99999987 788877777666554433
No 56
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=1e-15 Score=155.40 Aligned_cols=369 Identities=16% Similarity=0.068 Sum_probs=189.1
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccch
Q 004848 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296 (727)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 296 (727)
..+.-..|+.-+..+...+- ++-|+..|..|++.+. ..-..|...+..--..|..+.-..+|++++...+
T Consensus 512 eed~~~tw~~da~~~~k~~~-~~carAVya~alqvfp---------~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p 581 (913)
T KOG0495|consen 512 EEDRKSTWLDDAQSCEKRPA-IECARAVYAHALQVFP---------CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP 581 (913)
T ss_pred cchhHhHHhhhHHHHHhcch-HHHHHHHHHHHHhhcc---------chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 33344444444444444443 4444555555544431 1122233333333334444555555555544431
Q ss_pred hccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004848 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA 376 (727)
Q Consensus 297 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 376 (727)
..+. .|+..+..+...|+...|...+.++++. +|....+|+.--.+.+...+++.|..+|.++
T Consensus 582 -----kae~----lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 582 -----KAEI----LWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred -----cchh----HHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 1111 2444444445555555555555555544 3444444444444444455555555555554
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004848 377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456 (727)
Q Consensus 377 l~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 456 (727)
....+.. .+|+.-+.+...+++.++|+.+++.+++. .|.....|..+|+++..+++.+.|...|.
T Consensus 645 r~~sgTe---------Rv~mKs~~~er~ld~~eeA~rllEe~lk~------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~ 709 (913)
T KOG0495|consen 645 RSISGTE---------RVWMKSANLERYLDNVEEALRLLEEALKS------FPDFHKLWLMLGQIEEQMENIEMAREAYL 709 (913)
T ss_pred hccCCcc---------hhhHHHhHHHHHhhhHHHHHHHHHHHHHh------CCchHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4432211 23444444444555555555555554432 33444455555555555555555555555
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHH
Q 004848 457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA 536 (727)
Q Consensus 457 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 536 (727)
..+.. .|.....|..|+.+-...|..-.|...++++.-. .|.....|......-.+.|+.+.|
T Consensus 710 ~G~k~--------cP~~ipLWllLakleEk~~~~~rAR~ildrarlk---------NPk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 710 QGTKK--------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK---------NPKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred hcccc--------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc---------CCCcchhHHHHHHHHHHcCCHHHH
Confidence 54444 3444455555555555555555555555554333 222233444444444455555555
Q ss_pred HHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCH
Q 004848 537 IKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI 616 (727)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 616 (727)
.....+|++-++.. | ..|..-..+.-.-++-..++.. +++.. ....++..+|.+++...++
T Consensus 773 ~~lmakALQecp~s-g------~LWaEaI~le~~~~rkTks~DA-------Lkkce-----~dphVllaia~lfw~e~k~ 833 (913)
T KOG0495|consen 773 ELLMAKALQECPSS-G------LLWAEAIWLEPRPQRKTKSIDA-------LKKCE-----HDPHVLLAIAKLFWSEKKI 833 (913)
T ss_pred HHHHHHHHHhCCcc-c------hhHHHHHHhccCcccchHHHHH-------HHhcc-----CCchhHHHHHHHHHHHHHH
Confidence 55555555544433 1 1111111111111111111111 11111 1235778899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 617 NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 617 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
++|.+.|.+++++ +|+..++|..+-..+...|.-++-.+.|.++...
T Consensus 834 ~kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 834 EKAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 9999999999999 8999999999999999999999999999888753
No 57
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.77 E-value=1.3e-14 Score=148.06 Aligned_cols=419 Identities=14% Similarity=0.120 Sum_probs=294.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccC
Q 004848 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (727)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (727)
-..++..+.-.+..++ |.+.+...+..++-+ |+....+...|..+..+|+-++|..+...++...
T Consensus 7 E~~lF~~~lk~yE~kQ-YkkgLK~~~~iL~k~---------~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d----- 71 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQ-YKKGLKLIKQILKKF---------PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND----- 71 (700)
T ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHhC---------CccchhHHhccchhhcccchHHHHHHHHHHhccC-----
Confidence 3467777888888887 888888877777632 5567778889999999999999999999999864
Q ss_pred ccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004848 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380 (727)
Q Consensus 301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 380 (727)
... -.+|..+|.++....+|++|+++|+.|+.+ .+++..++..++.+..+.++++.....-.+.++..
T Consensus 72 ~~S----~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~ 139 (700)
T KOG1156|consen 72 LKS----HVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR 139 (700)
T ss_pred ccc----chhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 111 236999999999999999999999999999 78999999999999999999999999999999888
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848 381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN--DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (727)
Q Consensus 381 ~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (727)
+... ..|...+..+...|++..|....+......... ........+......+....|.+++|++.+..-
T Consensus 140 ~~~r--------a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 140 PSQR--------ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred hhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 7654 458999999999999999999888776544311 122334455566677888889988888776553
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHH-
Q 004848 459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI- 537 (727)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~- 537 (727)
-.- --+........|.++..++++++|...|...+.. .|+....+..+-.++..-.+--+++
T Consensus 212 e~~--------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r---------nPdn~~Yy~~l~~~lgk~~d~~~~lk 274 (700)
T KOG1156|consen 212 EKQ--------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER---------NPDNLDYYEGLEKALGKIKDMLEALK 274 (700)
T ss_pred hhH--------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh---------CchhHHHHHHHHHHHHHHhhhHHHHH
Confidence 322 2333455667799999999999999999998887 3444444544444443222222233
Q ss_pred HHHHHHHHHHHhCCCC---------CccHHHH----------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-
Q 004848 538 KLLQKALKIYNDAPGQ---------QSTVAGI----------------EAQMGVMYYMLGNYSDSYDSFKNAISKLRAI- 591 (727)
Q Consensus 538 ~~~~~al~~~~~~~~~---------~~~~~~~----------------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~- 591 (727)
..|...-+.++...-. ....... ...+-.+| .+..+. .++++.+..+...
T Consensus 275 ~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy---k~p~k~-~~le~Lvt~y~~~L 350 (700)
T KOG1156|consen 275 ALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY---KDPEKV-AFLEKLVTSYQHSL 350 (700)
T ss_pred HHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH---hchhHh-HHHHHHHHHHHhhc
Confidence 3333322222211000 0000000 00111111 111111 2444444333322
Q ss_pred CC------------CCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChH
Q 004848 592 GE------------RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD 659 (727)
Q Consensus 592 ~~------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 659 (727)
.+ ..+....++++.++.-+...|+++.|..++..|+.. .|...+.|..-|+++...|+++
T Consensus 351 ~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--------TPTliEly~~KaRI~kH~G~l~ 422 (700)
T KOG1156|consen 351 SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--------TPTLIELYLVKARIFKHAGLLD 422 (700)
T ss_pred ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHhcCChH
Confidence 11 134556788889999999999999999999999998 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 004848 660 DAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLL 712 (727)
Q Consensus 660 ~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al 712 (727)
+|..++..+.++. .++ .-.--.-|.-..+..+.++|. +.+...-
T Consensus 423 eAa~~l~ea~elD-------~aD-R~INsKcAKYmLrAn~i~eA~-~~~skFT 466 (700)
T KOG1156|consen 423 EAAAWLDEAQELD-------TAD-RAINSKCAKYMLRANEIEEAE-EVLSKFT 466 (700)
T ss_pred HHHHHHHHHHhcc-------chh-HHHHHHHHHHHHHccccHHHH-HHHHHhh
Confidence 9999999999862 222 222224577778888888888 6655443
No 58
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=1.2e-17 Score=167.77 Aligned_cols=266 Identities=23% Similarity=0.247 Sum_probs=113.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004848 396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS 475 (727)
Q Consensus 396 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 475 (727)
..+|.++...|++++|++.+.+.+... .++.....|..+|.+....++++.|+..|++++.. .+....
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~----~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~~~ 79 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI----APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKANPQ 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc----ccccccccccccccccccccccccccccccccccc--------cccccc
Confidence 356999999999999999996654321 13455577888999999999999999999999887 555667
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCc
Q 004848 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS 555 (727)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 555 (727)
.+..++.+ ...+++++|+.+++++.+... ....+..+..++...++++++...++++..... ..
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~----------~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~ 143 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDG----------DPRYLLSALQLYYRLGDYDEAEELLEKLEELPA-----AP 143 (280)
T ss_dssp -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T--------
T ss_pred cccccccc-ccccccccccccccccccccc----------ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-----CC
Confidence 77778887 789999999999988876531 123455677788999999999999999774321 11
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004848 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (727)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (727)
.....+..+|.++...|++++|+.+|++++... +....+...++.++...|+++++.+.+......
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~------ 209 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELD--------PDDPDARNALAWLLIDMGDYDEAREALKRLLKA------ 209 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH------
Confidence 235678899999999999999999999999973 334567888999999999999988888887776
Q ss_pred CCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004848 636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (727)
Q Consensus 636 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (727)
.|.....+..+|.+|..+|++++|+.+|++++.. +|.++..+..+|.++...|+.++|. ..+++++..
T Consensus 210 --~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~-~~~~~~~~~ 277 (280)
T PF13429_consen 210 --APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEAL-RLRRQALRL 277 (280)
T ss_dssp ---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT-------------------
T ss_pred --CcCHHHHHHHHHHHhccccccccccccccccccc--------ccccccccccccccccccccccccc-ccccccccc
Confidence 2333346788999999999999999999999986 7888999999999999999999999 999888764
No 59
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=1e-17 Score=168.20 Aligned_cols=266 Identities=20% Similarity=0.161 Sum_probs=113.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchH
Q 004848 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV 349 (727)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 349 (727)
.+|.+++..|++++|++.+.+.+.... ++. ....|..+|.+....++++.|+..|++++.. ++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~---~~~----~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~ 77 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA---PPD----DPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKAN 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc---ccc----ccccccccccccccccccccccccccccccc--------cccc
Confidence 569999999999999999977654320 112 2245888999999999999999999999987 4555
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 004848 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (727)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (727)
...+..++.+ ...+++++|+.++.++++..+.. ..+..+..++...++++++...+.++.. ....+
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~---------~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~ 143 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP---------RYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAP 143 (280)
T ss_dssp --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-----T---
T ss_pred cccccccccc-ccccccccccccccccccccccc---------chhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCC
Confidence 6667777777 78999999999999887765322 2356677788999999999999988653 22234
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCC
Q 004848 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (727)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (727)
.....+..+|.++...|++++|+.+|+++++. .|....++..++.++...|+++++...+.........
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~--- 212 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD--- 212 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT---
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC---
Confidence 56778899999999999999999999999999 7888899999999999999999988888887777422
Q ss_pred CCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (727)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (727)
....+..+|.++..+|++++|+.+|++++...+.. ..++..+|.++...|++++|..++.+++..+
T Consensus 213 ------~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-------~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 213 ------DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD-------PLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp ------SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--------HHHHHHHHHHHT-------------------
T ss_pred ------HHHHHHHHHHHhccccccccccccccccccccccc-------ccccccccccccccccccccccccccccccc
Confidence 23357788999999999999999999999876655 4678899999999999999999999988754
No 60
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.74 E-value=3.6e-15 Score=158.27 Aligned_cols=442 Identities=15% Similarity=0.084 Sum_probs=304.1
Q ss_pred ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHH
Q 004848 208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV 287 (727)
Q Consensus 208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 287 (727)
..+......+|..+.++-.+|..|....+ ...|..+|.+|.++- +..+.+....+..|....+++.|...
T Consensus 479 ~ali~alrld~~~apaf~~LG~iYrd~~D-m~RA~kCf~KAFeLD---------atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 479 HALIRALRLDVSLAPAFAFLGQIYRDSDD-MKRAKKCFDKAFELD---------ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC---------chhhhhHHHHHHHhhccccHHHHHHH
Confidence 34455566677777777777777766664 677777777776542 33355566677777777777777777
Q ss_pred HHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHH
Q 004848 288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFS 367 (727)
Q Consensus 288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 367 (727)
.-.+-+... .......|..+|..|...+++..|+..|+.++.. +|....+|..+|.+|...|++.
T Consensus 549 ~l~~~qka~-------a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~ 613 (1238)
T KOG1127|consen 549 CLRAAQKAP-------AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYS 613 (1238)
T ss_pred HHHHhhhch-------HHHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCcee
Confidence 544443321 1223344677899999999999999999999998 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHcC
Q 004848 368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN-DQDAEVASVDCSIGDTYLSLS 446 (727)
Q Consensus 368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g 446 (727)
.|++.|.++..+.|... ...+..+.+....|+|.+|+..+...+...... .-....+.++..++..+...|
T Consensus 614 ~AlKvF~kAs~LrP~s~--------y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~g 685 (1238)
T KOG1127|consen 614 HALKVFTKASLLRPLSK--------YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITG 685 (1238)
T ss_pred hHHHhhhhhHhcCcHhH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99999999998887653 457788999999999999999998877544322 123456778888888888899
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-----------------------CCh------HHHHHHH
Q 004848 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-----------------------GKL------RESKSYC 497 (727)
Q Consensus 447 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------------------g~~------~~A~~~~ 497 (727)
-+.+|..+++++++.+.-............|..++....-. +.. --|.+++
T Consensus 686 f~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~ 765 (1238)
T KOG1127|consen 686 FQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECG 765 (1238)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHh
Confidence 99999999999988766543222122223333333322211 110 0122222
Q ss_pred HHHHHHHhcCCCCCChHhHHHHHHHHHHHHHh--------cccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH
Q 004848 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYES--------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY 569 (727)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~ 569 (727)
-..+.+. .....|++||.-|+. +.+...|+.++.+++++..+. ...|+.||.+ .
T Consensus 766 ~~hlsl~----------~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann-------~~~WnaLGVl-s 827 (1238)
T KOG1127|consen 766 IAHLSLA----------IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANN-------EGLWNALGVL-S 827 (1238)
T ss_pred hHHHHHh----------hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhcc-------HHHHHHHHHh-h
Confidence 2222221 114467788877766 234458999999999988766 3567777777 5
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004848 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649 (727)
Q Consensus 570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 649 (727)
..|++.-|..+|-+++... +.....|.++|.++.+..+++-|...|..+..+ +|.....|...+
T Consensus 828 g~gnva~aQHCfIks~~se--------p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--------dP~nl~~WlG~A 891 (1238)
T KOG1127|consen 828 GIGNVACAQHCFIKSRFSE--------PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--------DPLNLVQWLGEA 891 (1238)
T ss_pred ccchhhhhhhhhhhhhhcc--------ccchhheeccceeEEecccHHHhhHHHHhhhhc--------CchhhHHHHHHH
Confidence 5578888888888776642 234567777888888888888888777777776 676666666666
Q ss_pred HHHHHcCChHHHHHHHHHHHHHH-----------------------------------------HHhcCCCChhHHHHHH
Q 004848 650 GTYDAIGRLDDAIEILEFVVGIR-----------------------------------------EEKLGTANPDVDDEKR 688 (727)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~al~~~-----------------------------------------~~~~g~~~p~~~~~~~ 688 (727)
.+....|+.-++...+...-++. -..+=..+|+...++.
T Consensus 892 li~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~ 971 (1238)
T KOG1127|consen 892 LIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYA 971 (1238)
T ss_pred HhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHH
Confidence 66666666555555554411110 0111135888899999
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 689 RLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 689 ~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
..|.++..++.+++|. +...+++.+-..
T Consensus 972 ~~gstlEhL~ey~~a~-ela~RliglLe~ 999 (1238)
T KOG1127|consen 972 ANGSTLEHLEEYRAAL-ELATRLIGLLEL 999 (1238)
T ss_pred HHHhHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999999999 888887766443
No 61
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.73 E-value=1.4e-14 Score=137.37 Aligned_cols=346 Identities=15% Similarity=0.152 Sum_probs=274.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccC
Q 004848 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (727)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (727)
+......|..++...+ +++|+..+.+.+...... ......+-.+..+...+|.|++++.+---.+.....
T Consensus 6 ~k~q~~~g~~Ly~s~~-~~~al~~w~~~L~~l~~~------~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~--- 75 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQ-TEKALQVWTKVLEKLSDL------MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARE--- 75 (518)
T ss_pred hHHHHHHHHhHhcCch-HHHHHHHHHHHHHHHHHH------HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHH---
Confidence 3456677888899887 999999999988776443 334556777788899999999988877666655422
Q ss_pred ccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004848 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD-PRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379 (727)
Q Consensus 301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 379 (727)
.++......++.+++..+...-++.+++.+-...+.+- +... ..-......++.++...+.|+++++.|+.|+++
T Consensus 76 ~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~ 151 (518)
T KOG1941|consen 76 LEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRY 151 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33444567789999999999999999988877776651 1111 123356677899999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004848 380 HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD----AEVASVDCSIGDTYLSLSRYDEAGFAY 455 (727)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~ 455 (727)
...+.++ .....++..||.++....|+++|+-+..+|..+....+.. .....+++.++..+..+|+.-.|.+++
T Consensus 152 A~~~~D~--~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C 229 (518)
T KOG1941|consen 152 AHNNDDA--MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECC 229 (518)
T ss_pred hhccCCc--eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 9888765 3335678899999999999999999999999888776632 234567889999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHH
Q 004848 456 QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ 535 (727)
Q Consensus 456 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 535 (727)
+++.++.-..+ +.+..+..+..+|.+|...|+.+.|..-|+.|+....... +......++...|.++....-..+
T Consensus 230 ~Ea~klal~~G--dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g---drmgqv~al~g~Akc~~~~r~~~k 304 (518)
T KOG1941|consen 230 EEAMKLALQHG--DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG---DRMGQVEALDGAAKCLETLRLQNK 304 (518)
T ss_pred HHHHHHHHHhC--ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999988776 5788899999999999999999999999999999877642 233445667777777766554444
Q ss_pred -----HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848 536 -----AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (727)
Q Consensus 536 -----A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (727)
|++.-.+++++.... |....+..+...++.+|..+|.-++-...+.++-+..
T Consensus 305 ~~~Crale~n~r~levA~~I-G~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~ 361 (518)
T KOG1941|consen 305 ICNCRALEFNTRLLEVASSI-GAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV 361 (518)
T ss_pred ccccchhHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 999999999998877 7777777889999999999998888777777766543
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.73 E-value=3.2e-15 Score=164.05 Aligned_cols=254 Identities=13% Similarity=0.020 Sum_probs=203.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004848 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL---------SRYDEAGFAYQKALTAFKTNKGENHPAVASV 476 (727)
Q Consensus 406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 476 (727)
+++++|+.+|++++. .+|..+.++..+|.+|... +++++|+..+++++++ +|....+
T Consensus 275 ~~~~~A~~~~~~Al~------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~~a 340 (553)
T PRK12370 275 YSLQQALKLLTQCVN------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNPQA 340 (553)
T ss_pred HHHHHHHHHHHHHHh------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCHHH
Confidence 457899999999975 4667778888888887643 3489999999999998 7889999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCcc
Q 004848 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST 556 (727)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 556 (727)
+..+|.++...|++++|+..|++++++ .|....+++.+|.++...|++++|+.++++++++.+...
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l---------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~----- 406 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLL---------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA----- 406 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-----
Confidence 999999999999999999999999999 445567899999999999999999999999999976542
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 004848 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (727)
Q Consensus 557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (727)
..+..++.+++..|++++|+..+++++... ++.....+..+|.++...|++++|+..+.+....
T Consensus 407 --~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~------- 470 (553)
T PRK12370 407 --AAGITKLWITYYHTGIDDAIRLGDELRSQH-------LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ------- 470 (553)
T ss_pred --hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-------
Confidence 233445666778999999999999987641 1223567888999999999999999999887665
Q ss_pred CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 004848 637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (727)
Q Consensus 637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (727)
.|....+...++..|...|+ +|...+++.++..... +.+ ...+..+|.-.|+.+.+. .. +++.+.+.
T Consensus 471 -~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~--~~~------~~~~~~~~~~~g~~~~~~-~~-~~~~~~~~ 537 (553)
T PRK12370 471 -EITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRI--DNN------PGLLPLVLVAHGEAIAEK-MW-NKFKNEDN 537 (553)
T ss_pred -cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHh--hcC------chHHHHHHHHHhhhHHHH-HH-HHhhccch
Confidence 67777788899999998884 8888888877654321 111 223788888899988887 54 76665544
No 63
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.73 E-value=1.4e-14 Score=137.24 Aligned_cols=345 Identities=16% Similarity=0.116 Sum_probs=277.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCc
Q 004848 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP 347 (727)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 347 (727)
...-|.-++...++++|+..+.+.+... ++....+.++-.+..+...+|.|++++.+--..+..+... ++..
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l------~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~ 80 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKL------SDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSD 80 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHH------HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 3445677788889999999998888763 2334466778888899999999999988877766665543 1224
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 004848 348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ 427 (727)
Q Consensus 348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 427 (727)
...+++.+++..+....+|.+++.+....+.+-...... .. ......++..+..++.|++++++|+.|+.+....++
T Consensus 81 ~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~-~~--gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D 157 (518)
T KOG1941|consen 81 FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQ-LG--GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD 157 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccc-cc--chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence 566889999999999999999999988877654332211 11 245677999999999999999999999999999988
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004848 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN--HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (727)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (727)
......++..+|.+|....|+++|+.+..+|.++.+...-.+ ......+++.++..+..+|+.-.|.++++++.++.-
T Consensus 158 ~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal 237 (518)
T KOG1941|consen 158 AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL 237 (518)
T ss_pred ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999987765332 233566788999999999999999999999999977
Q ss_pred cCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHH-----HHHH
Q 004848 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD-----SYDS 580 (727)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~ 580 (727)
.. .+.+..+..+..+|.+|...|+.+.|..-|+.|....... |+.-....++...+.++....-..+ |+++
T Consensus 238 ~~---Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~-gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~ 313 (518)
T KOG1941|consen 238 QH---GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL-GDRMGQVEALDGAAKCLETLRLQNKICNCRALEF 313 (518)
T ss_pred Hh---CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Confidence 64 3466778889999999999999999999999999988766 6655555667777777766555555 9999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848 581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (727)
-.+++++...++.+. ....+...++.+|..+|.-++-...+..+-+.
T Consensus 314 n~r~levA~~IG~K~--~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 314 NTRLLEVASSIGAKL--SVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 999999999888764 34578888999999999888877777776554
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.73 E-value=7.8e-16 Score=137.84 Aligned_cols=208 Identities=17% Similarity=0.134 Sum_probs=183.8
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004848 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (727)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (727)
.....+...||.-|...|++..|...+++|+++ +|....++..+|.+|...|+.+.|.+.|++|+.+.++.
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~---------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~ 102 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH---------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN 102 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc
Confidence 445678899999999999999999999999999 66678899999999999999999999999999998877
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004848 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (727)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 630 (727)
..++++.|..++.+|++++|...|++|+.. +.-.....++.++|.|.++.|+++.|.++|++++++
T Consensus 103 -------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~- 168 (250)
T COG3063 103 -------GDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL- 168 (250)
T ss_pred -------cchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh-
Confidence 478999999999999999999999999873 222335679999999999999999999999999999
Q ss_pred HHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 004848 631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET 710 (727)
Q Consensus 631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ 710 (727)
+|........++..+...|++..|..++++.... -+..++.+....++-...|+.+.+. .+=.+
T Consensus 169 -------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--------~~~~A~sL~L~iriak~~gd~~~a~-~Y~~q 232 (250)
T COG3063 169 -------DPQFPPALLELARLHYKAGDYAPARLYLERYQQR--------GGAQAESLLLGIRIAKRLGDRAAAQ-RYQAQ 232 (250)
T ss_pred -------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc--------ccccHHHHHHHHHHHHHhccHHHHH-HHHHH
Confidence 8888889999999999999999999999988754 2355777777788889999999988 77777
Q ss_pred HHHHhhh
Q 004848 711 LLDANSR 717 (727)
Q Consensus 711 al~~~p~ 717 (727)
+-.+.|.
T Consensus 233 L~r~fP~ 239 (250)
T COG3063 233 LQRLFPY 239 (250)
T ss_pred HHHhCCC
Confidence 7777776
No 65
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.73 E-value=3.2e-14 Score=150.39 Aligned_cols=315 Identities=14% Similarity=0.081 Sum_probs=229.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 004848 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (727)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (727)
+......|.+....|+++.|.+.+.++.+..+.. ...+...|.++...|+++.|..++.++.+.. ++..
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~--------~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~---p~~~ 152 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEP--------VLNLIKAAEAAQQRGDEARANQHLEEAAELA---GNDN 152 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CcCc
Confidence 3445667888889999999999998887765332 2446778999999999999999999886421 1111
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCC
Q 004848 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (727)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (727)
..+....+.++...|++++|...+++.++. .|....++..++.++...|++++|...+.+.++...
T Consensus 153 --l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~---- 218 (409)
T TIGR00540 153 --ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL---- 218 (409)
T ss_pred --hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC----
Confidence 123444589999999999999999999987 788889999999999999999999999998887621
Q ss_pred CCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (727)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (727)
.+.............-+...+..+++...+..+....+.. ......++..++..+...|++++|...++++++...
T Consensus 219 -~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~---~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p 294 (409)
T TIGR00540 219 -FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH---RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG 294 (409)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH---HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Confidence 1122222222222222234455555556666666554421 111246778899999999999999999999998632
Q ss_pred HhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHH--HHHHHHHHHHHHcCChHHHHHHHHH
Q 004848 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL--GVYSNLAGTYDAIGRLDDAIEILEF 667 (727)
Q Consensus 590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~ 667 (727)
. +.... ............++...+++.++++++. +|+.. ..+..+|+++...|++++|.++|++
T Consensus 295 d-----~~~~~-~~~l~~~~~l~~~~~~~~~~~~e~~lk~--------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 295 D-----DRAIS-LPLCLPIPRLKPEDNEKLEKLIEKQAKN--------VDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred C-----cccch-hHHHHHhhhcCCCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 2 11000 0122233334468889999999999988 78877 7889999999999999999999995
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 004848 668 VVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (727)
Q Consensus 668 al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (727)
+..+ ..+|+... +..||.++.+.|+.++|. +++++++..-
T Consensus 361 a~a~------~~~p~~~~-~~~La~ll~~~g~~~~A~-~~~~~~l~~~ 400 (409)
T TIGR00540 361 VAAC------KEQLDAND-LAMAADAFDQAGDKAEAA-AMRQDSLGLM 400 (409)
T ss_pred hHHh------hcCCCHHH-HHHHHHHHHHcCCHHHHH-HHHHHHHHHH
Confidence 3332 12566555 559999999999999999 9999987653
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.72 E-value=1.7e-15 Score=166.23 Aligned_cols=263 Identities=11% Similarity=-0.030 Sum_probs=203.4
Q ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc---------CChhHHHHHHHHhc
Q 004848 224 LLKQARELISSG--DNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSL---------GQYNEAIPVLEQSI 292 (727)
Q Consensus 224 l~~~a~~~~~~g--~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al 292 (727)
++..|...+... +++++|+.+|++|+++. |..+.++..+|.+|... +++++|+..+++++
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld---------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMS---------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcC---------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 445555444332 23678888888888752 45577788888887644 34899999999999
Q ss_pred ccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHH
Q 004848 293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF 372 (727)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 372 (727)
++. ++++. ++..+|.++...|++++|+.+|++++++ +|..+.+++.+|.++...|++++|+.+
T Consensus 332 ~ld-----P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 332 ELD-----HNNPQ----ALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred hcC-----CCCHH----HHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 986 55543 4888999999999999999999999999 799999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 004848 373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAG 452 (727)
Q Consensus 373 ~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 452 (727)
+++++++.|... ..+..++.+++..|++++|+..+++++.. ..+.....+..+|.++..+|++++|.
T Consensus 395 ~~~Al~l~P~~~--------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-----~~p~~~~~~~~la~~l~~~G~~~eA~ 461 (553)
T PRK12370 395 INECLKLDPTRA--------AAGITKLWITYYHTGIDDAIRLGDELRSQ-----HLQDNPILLSMQVMFLSLKGKHELAR 461 (553)
T ss_pred HHHHHhcCCCCh--------hhHHHHHHHHHhccCHHHHHHHHHHHHHh-----ccccCHHHHHHHHHHHHhCCCHHHHH
Confidence 999999987643 22445566677789999999999887642 23445567888999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhccc
Q 004848 453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE 532 (727)
Q Consensus 453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 532 (727)
..+.++... .|....++..++..|...| ++|...+++.++..... ..-...++.+|.-.|+
T Consensus 462 ~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~---------~~~~~~~~~~~~~~g~ 522 (553)
T PRK12370 462 KLTKEISTQ--------EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI---------DNNPGLLPLVLVAHGE 522 (553)
T ss_pred HHHHHhhhc--------cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh---------hcCchHHHHHHHHHhh
Confidence 999887655 6777788888899998888 48888888877664431 1112237778888888
Q ss_pred HHHHHHHHHHHHH
Q 004848 533 LEQAIKLLQKALK 545 (727)
Q Consensus 533 ~~~A~~~~~~al~ 545 (727)
-+.+..+ +++.+
T Consensus 523 ~~~~~~~-~~~~~ 534 (553)
T PRK12370 523 AIAEKMW-NKFKN 534 (553)
T ss_pred hHHHHHH-HHhhc
Confidence 8877766 55543
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.72 E-value=2.3e-13 Score=139.09 Aligned_cols=443 Identities=16% Similarity=0.157 Sum_probs=309.2
Q ss_pred ccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 004848 212 EAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQS 291 (727)
Q Consensus 212 ~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 291 (727)
.....+|+.++.+-..|..+...|+ -++|.++...++.. ++....||+.+|.++....+|++|+.+|+.|
T Consensus 32 ~iL~k~~eHgeslAmkGL~L~~lg~-~~ea~~~vr~glr~---------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nA 101 (700)
T KOG1156|consen 32 QILKKFPEHGESLAMKGLTLNCLGK-KEEAYELVRLGLRN---------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNA 101 (700)
T ss_pred HHHHhCCccchhHHhccchhhcccc-hHHHHHHHHHHhcc---------CcccchhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3444788888999999999999998 89999999988863 2445779999999999999999999999999
Q ss_pred cccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHH
Q 004848 292 IEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK 371 (727)
Q Consensus 292 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 371 (727)
+.+. +++ ...|..++..-.++++++-....-.+.+++ .|.....|..+|..+...|++..|..
T Consensus 102 l~~~-----~dN----~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 102 LKIE-----KDN----LQILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HhcC-----CCc----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9985 333 345899999999999999999998888888 57888899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004848 372 FCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA 451 (727)
Q Consensus 372 ~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 451 (727)
..+...................+......+....|.+++|++.+..-.. ...+........|.++..++++++|
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~------~i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK------QIVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh------HHHHHHHHhhhHHHHHHHHhhHHhH
Confidence 9988877765444444555566777778888999999999988764421 1223334456678999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH-HHHHHHHHHHhcCC----------CCCChHhHHHH-
Q 004848 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK-SYCENALRIYEKPV----------PGVPPEEIASG- 519 (727)
Q Consensus 452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~----------~~~~~~~~~~~- 519 (727)
...|...+.. .|+....+..+-.++..-.+.-+++ ..|...-+.+.... .+..-+....-
T Consensus 239 ~~~y~~Ll~r--------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdky 310 (700)
T KOG1156|consen 239 VKVYRRLLER--------NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKY 310 (700)
T ss_pred HHHHHHHHhh--------CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHH
Confidence 9999999987 7888888777777775222233333 33333322221110 00011111000
Q ss_pred ------------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC--------------CCCccHHHHHHHHHHHHHHcCC
Q 004848 520 ------------LTDVSSIYESMNELEQAIKLLQKALKIYNDAP--------------GQQSTVAGIEAQMGVMYYMLGN 573 (727)
Q Consensus 520 ------------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~~~~~~~~~~~~la~~~~~~g~ 573 (727)
...+-.+| .+..+. ..+++.+..+.... ..+..+.+.++.++..+...|+
T Consensus 311 L~~~l~Kg~p~vf~dl~SLy---k~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 311 LRPLLSKGVPSVFKDLRSLY---KDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred HHHHhhcCCCchhhhhHHHH---hchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence 00111111 111111 13333333222111 1233567778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 004848 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653 (727)
Q Consensus 574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 653 (727)
++.|..+++.|+.- .+.....|...|+++...|++++|..++.++.++ +....-+-..-|.-..
T Consensus 387 ~~~A~~yId~AIdH--------TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--------D~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 387 YEVALEYIDLAIDH--------TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--------DTADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--------cchhHHHHHHHHHHHH
Confidence 99999999999873 5667788999999999999999999999999887 2222223335777788
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHH--HHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 654 AIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKR--RLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 654 ~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~--~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+..+.++|.+...+.-.-.....+ +-.+..-.|+ .-|..|.++|++-.|+ +-+..+-....+
T Consensus 451 rAn~i~eA~~~~skFTr~~~~~~~-~L~~mqcmWf~~E~g~ay~r~~k~g~AL-Kkfh~i~k~~~~ 514 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREGFGAVN-NLAEMQCMWFQLEDGEAYLRQNKLGLAL-KKFHEIEKHYKT 514 (700)
T ss_pred HccccHHHHHHHHHhhhcccchhh-hHHHhhhHHHhHhhhHHHHHHHHHHHHH-HHHhhHHHHHHH
Confidence 899999998877665432111110 1112222333 3478899999998888 666655544433
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.72 E-value=2.2e-15 Score=147.48 Aligned_cols=208 Identities=20% Similarity=0.223 Sum_probs=177.6
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (727)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (727)
.......+..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++...+.
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH---------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN 97 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4456788999999999999999999999999887 2344678889999999999999999999999987554
Q ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (727)
. ..++..+|.++...|++++|+.+|++++.... .......+..+|.++...|++++|..+|.+++..
T Consensus 98 ~-------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 98 N-------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred C-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 35788899999999999999999999987411 1223457888999999999999999999999998
Q ss_pred HHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 004848 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLE 709 (727)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~ 709 (727)
.|....++..+|.++...|++++|..++++++.+ .|.....+..++.++...|+.++|. .+.+
T Consensus 165 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~ 227 (234)
T TIGR02521 165 --------DPQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQ-RYGA 227 (234)
T ss_pred --------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHH-HHHH
Confidence 6777778999999999999999999999999976 2445666778899999999999999 8888
Q ss_pred HHHHHhh
Q 004848 710 TLLDANS 716 (727)
Q Consensus 710 ~al~~~p 716 (727)
.+....|
T Consensus 228 ~~~~~~~ 234 (234)
T TIGR02521 228 QLQKLFP 234 (234)
T ss_pred HHHhhCc
Confidence 7776544
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.72 E-value=1.9e-15 Score=151.86 Aligned_cols=247 Identities=16% Similarity=0.122 Sum_probs=180.2
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004848 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN 485 (727)
Q Consensus 406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 485 (727)
+..+.++..+.+++... .-.+...+..++.+|.+|...|++++|+..|++++++ .|....++..+|.++.
T Consensus 40 ~~~e~~i~~~~~~l~~~--~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~ 109 (296)
T PRK11189 40 LQQEVILARLNQILASR--DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLT 109 (296)
T ss_pred hHHHHHHHHHHHHHccc--cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHH
Confidence 45677777777765321 1234556788999999999999999999999999998 7888999999999999
Q ss_pred HcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 004848 486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565 (727)
Q Consensus 486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 565 (727)
..|++++|+..|++++++ .|....++.++|.++...|++++|+..|++++++.+..+ ....+ .
T Consensus 110 ~~g~~~~A~~~~~~Al~l---------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-----~~~~~---~ 172 (296)
T PRK11189 110 QAGNFDAAYEAFDSVLEL---------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-----YRALW---L 172 (296)
T ss_pred HCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHH---H
Confidence 999999999999999998 444567899999999999999999999999999866541 11122 2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 004848 566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645 (727)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 645 (727)
.++...+++++|+..|.+++... + +. .+. .+.++...|++.++ ..++.+.+.+..... -.|....+|
T Consensus 173 ~l~~~~~~~~~A~~~l~~~~~~~----~--~~----~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~-l~~~~~ea~ 239 (296)
T PRK11189 173 YLAESKLDPKQAKENLKQRYEKL----D--KE----QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTE-LAERLCETY 239 (296)
T ss_pred HHHHccCCHHHHHHHHHHHHhhC----C--cc----ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHH-HHHHHHHHH
Confidence 23455788999999998766431 1 11 111 34455556665443 233333321110000 045667899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCC
Q 004848 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699 (727)
Q Consensus 646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~ 699 (727)
++||.++...|++++|+.+|++++.+. .++..+..+.+.++....++
T Consensus 240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~~-------~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 240 FYLAKYYLSLGDLDEAAALFKLALANN-------VYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-------CchHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999862 24777777666666555444
No 70
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=1.1e-14 Score=153.98 Aligned_cols=318 Identities=13% Similarity=0.041 Sum_probs=226.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccC
Q 004848 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (727)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (727)
+...+..|...+..|+ ++.|.+.+.++.+.. +. ....+...|.++..+|+++.|..+|.++.+..
T Consensus 84 ~~~~~~~glla~~~g~-~~~A~~~l~~~~~~~-------~~--~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~----- 148 (409)
T TIGR00540 84 AQKQTEEALLKLAEGD-YAKAEKLIAKNADHA-------AE--PVLNLIKAAEAAQQRGDEARANQHLEEAAELA----- 148 (409)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHhhcC-------CC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence 3455778888899997 999999988876642 22 24456677999999999999999999997653
Q ss_pred ccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004848 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380 (727)
Q Consensus 301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 380 (727)
++.. ..+....+.++...|+++.|...+++.++. .|....++..++.++...|++++|.+.+.+.++..
T Consensus 149 p~~~---l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 149 GNDN---ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred CcCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 2221 112445699999999999999999999988 68888999999999999999999999999888763
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848 381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT 460 (727)
Q Consensus 381 ~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 460 (727)
.... ............-....+..+++...+..+.... ....+.....+..++..+...|++++|+..++++++
T Consensus 218 ~~~~----~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~--p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~ 291 (409)
T TIGR00540 218 LFDD----EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ--PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK 291 (409)
T ss_pred CCCH----HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC--CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 1110 1011111111222233344444444555444321 111123567888899999999999999999999999
Q ss_pred HHHHhcCCCChhHHHH--HHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHH
Q 004848 461 AFKTNKGENHPAVASV--FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538 (727)
Q Consensus 461 ~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (727)
. .|+.... ...........++.+.++..++++++.. .+++. +..+..+|.++...|++++|.+
T Consensus 292 ~--------~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~------p~~~~-~~ll~sLg~l~~~~~~~~~A~~ 356 (409)
T TIGR00540 292 K--------LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV------DDKPK-CCINRALGQLLMKHGEFIEAAD 356 (409)
T ss_pred h--------CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC------CCChh-HHHHHHHHHHHHHcccHHHHHH
Confidence 7 4444321 1222333344578889999999988872 22322 3678899999999999999999
Q ss_pred HHHH--HHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004848 539 LLQK--ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (727)
Q Consensus 539 ~~~~--al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (727)
+|++ +++..++. ..+..+|.++...|+.++|..+|++++...-..++
T Consensus 357 ~le~a~a~~~~p~~--------~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~~ 405 (409)
T TIGR00540 357 AFKNVAACKEQLDA--------NDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQD 405 (409)
T ss_pred HHHHhHHhhcCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc
Confidence 9995 54443322 34568999999999999999999999887655443
No 71
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=5.9e-13 Score=130.76 Aligned_cols=432 Identities=15% Similarity=0.097 Sum_probs=302.6
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004848 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (727)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (727)
-....|...|..-...++ +..|...|++||.. + ......+...+.+-++......|..++++|+.+.+.
T Consensus 71 ~~~~~WikYaqwEesq~e-~~RARSv~ERALdv-------d--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR- 139 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKE-IQRARSVFERALDV-------D--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR- 139 (677)
T ss_pred HHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHhc-------c--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-
Confidence 344555666655555554 66666666666653 1 223455777788888888889999999998887521
Q ss_pred cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004848 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD 378 (727)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 378 (727)
. -..|+....+-..+|+..-|.+.|++-+.. .|+. .+|......-.+....+.|...|++.+-
T Consensus 140 ----V----dqlWyKY~ymEE~LgNi~gaRqiferW~~w--------~P~e-qaW~sfI~fElRykeieraR~IYerfV~ 202 (677)
T KOG1915|consen 140 ----V----DQLWYKYIYMEEMLGNIAGARQIFERWMEW--------EPDE-QAWLSFIKFELRYKEIERARSIYERFVL 202 (677)
T ss_pred ----H----HHHHHHHHHHHHHhcccHHHHHHHHHHHcC--------CCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHhe
Confidence 1 123666667777888888888888888877 3443 5666666666677778888888888776
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848 379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (727)
Q Consensus 379 ~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (727)
.+|+. ..|...+..-...|+..-|...|.+|+..+. ++......+...|..-..+..++.|...|+-|
T Consensus 203 ~HP~v---------~~wikyarFE~k~g~~~~aR~VyerAie~~~---~d~~~e~lfvaFA~fEe~qkE~ERar~iykyA 270 (677)
T KOG1915|consen 203 VHPKV---------SNWIKYARFEEKHGNVALARSVYERAIEFLG---DDEEAEILFVAFAEFEERQKEYERARFIYKYA 270 (677)
T ss_pred ecccH---------HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66543 4577777777788888888888888775543 23334444555555555666666666666655
Q ss_pred HHHH---------------HHhcCC---------------------CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848 459 LTAF---------------KTNKGE---------------------NHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502 (727)
Q Consensus 459 l~~~---------------~~~~~~---------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (727)
++.. ++.+|+ .+|.+-.+|+..-.+-...|+.+.-.+.|++|+.
T Consensus 271 ld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa 350 (677)
T KOG1915|consen 271 LDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA 350 (677)
T ss_pred HHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 5431 111111 3566677888888888888999999999999987
Q ss_pred HHhcCCCCCChHhHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004848 503 IYEKPVPGVPPEEIASGLTDVSSI-YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF 581 (727)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 581 (727)
-..-......-......|.+.+.. -....+.+.+.+.|+.++++.|. .....+.+|...|.....+.+...|.+.+
T Consensus 351 nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH---kkFtFaKiWlmyA~feIRq~~l~~ARkiL 427 (677)
T KOG1915|consen 351 NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH---KKFTFAKIWLMYAQFEIRQLNLTGARKIL 427 (677)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc---ccchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 632210000001122223333221 23567899999999999998753 34577888999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHH
Q 004848 582 KNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDA 661 (727)
Q Consensus 582 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 661 (727)
-.|+..+++ ..++.....+-.++++++....+|++-++. .|....+|...|.+-..+|+.+.|
T Consensus 428 G~AIG~cPK---------~KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 428 GNAIGKCPK---------DKLFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred HHHhccCCc---------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHHHH
Confidence 999876543 244555566777889999999999999998 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 662 IEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 662 ~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
...|+-|+.--. -+-|. ..+......-...|.++.|. ..|+++|+..+.
T Consensus 491 RaifelAi~qp~----ldmpe--llwkaYIdFEi~~~E~ekaR-~LYerlL~rt~h 539 (677)
T KOG1915|consen 491 RAIFELAISQPA----LDMPE--LLWKAYIDFEIEEGEFEKAR-ALYERLLDRTQH 539 (677)
T ss_pred HHHHHHHhcCcc----cccHH--HHHHHhhhhhhhcchHHHHH-HHHHHHHHhccc
Confidence 999999886310 11122 23444556667889999999 999999998775
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=3.5e-13 Score=136.28 Aligned_cols=431 Identities=13% Similarity=0.104 Sum_probs=271.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCc
Q 004848 222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ 301 (727)
Q Consensus 222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 301 (727)
..++.--..+...|+ |++|+....+.+... |+...+++.--.++.+.++|++|+.+.+.-.... .
T Consensus 13 ~~l~t~ln~~~~~~e-~e~a~k~~~Kil~~~---------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-----~ 77 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGE-YEEAVKTANKILSIV---------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-----V 77 (652)
T ss_pred HHHHHHHHHhccchH-HHHHHHHHHHHHhcC---------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-----h
Confidence 566666777888887 888888888877653 3345567778888999999999996666543321 0
Q ss_pred cchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004848 302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381 (727)
Q Consensus 302 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (727)
.....+..+.|.++++..++|+..++-+ ++....++...|.+++++|+|++|...|+..++-..
T Consensus 78 -----~~~~~fEKAYc~Yrlnk~Dealk~~~~~-----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 78 -----INSFFFEKAYCEYRLNKLDEALKTLKGL-----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred -----cchhhHHHHHHHHHcccHHHHHHHHhcc-----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 1111367899999999999999998821 233445677789999999999999999998876543
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848 382 DNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD-AEVASVDCSIGDTYLSLSRYDEAGFAYQKALT 460 (727)
Q Consensus 382 ~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 460 (727)
...+. -.-.+.++..-...++ ........ ......+++.|.++...|+|.+|++.+++++.
T Consensus 142 dd~d~-----~~r~nl~a~~a~l~~~-------------~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 142 DDQDE-----ERRANLLAVAAALQVQ-------------LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred chHHH-----HHHHHHHHHHHhhhHH-------------HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 32211 1111222221111111 11112222 33567889999999999999999999999999
Q ss_pred HHHHhcCCCC-------hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccH
Q 004848 461 AFKTNKGENH-------PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL 533 (727)
Q Consensus 461 ~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 533 (727)
++++.+..++ .....+...|+.++..+|+-.+|...|...+..... +.+..+.+-++|-.+-....-+
T Consensus 204 ~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-----D~~~~Av~~NNLva~~~d~~~~ 278 (652)
T KOG2376|consen 204 ICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-----DEPSLAVAVNNLVALSKDQNYF 278 (652)
T ss_pred HHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-----CchHHHHHhcchhhhccccccC
Confidence 9887664332 234567889999999999999999999988876321 2333333333332221111101
Q ss_pred H---------------------------HHHH-----------HHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCH
Q 004848 534 E---------------------------QAIK-----------LLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNY 574 (727)
Q Consensus 534 ~---------------------------~A~~-----------~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~ 574 (727)
+ +++. --.++.++....++..+ ....++..-+...... .+
T Consensus 279 d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~-~~ 357 (652)
T KOG2376|consen 279 DGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREK-KH 357 (652)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHH-HH
Confidence 1 0000 00111112222222221 1111211111111111 33
Q ss_pred HHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 004848 575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654 (727)
Q Consensus 575 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 654 (727)
.+|..++ ....+.++.....+...++.+...+|+++.|++.+...+......... --....+-..+-..|..
T Consensus 358 ~ka~e~L-------~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P~~V~aiv~l~~~ 429 (652)
T KOG2376|consen 358 KKAIELL-------LQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLPGTVGAIVALYYK 429 (652)
T ss_pred hhhHHHH-------HHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccChhHHHHHHHHHHh
Confidence 3343333 333334444446678888999999999999999999655332222211 11222233455667888
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 655 IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 655 ~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.++.+-|...+..|+..+...... .+.....+..++.+-.+.|+.++|. ..|+++++.+|.
T Consensus 430 ~~~~~~a~~vl~~Ai~~~~~~~t~-s~~l~~~~~~aa~f~lr~G~~~ea~-s~leel~k~n~~ 490 (652)
T KOG2376|consen 430 IKDNDSASAVLDSAIKWWRKQQTG-SIALLSLMREAAEFKLRHGNEEEAS-SLLEELVKFNPN 490 (652)
T ss_pred ccCCccHHHHHHHHHHHHHHhccc-chHHHhHHHHHhHHHHhcCchHHHH-HHHHHHHHhCCc
Confidence 888888999999999887765543 3566667778888888999999999 999999998876
No 73
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.71 E-value=1.5e-14 Score=153.73 Aligned_cols=374 Identities=14% Similarity=0.105 Sum_probs=278.4
Q ss_pred cCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 004848 278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357 (727)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 357 (727)
..+...|...|-+++++. +. ...++..||.+|....+...|..+|++|.++ ++..+.+....+
T Consensus 471 rK~~~~al~ali~alrld-----~~----~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~a 533 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD-----VS----LAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASA 533 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc-----cc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHH
Confidence 445788999999999885 22 3345888999999999999999999999999 889999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004848 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437 (727)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 437 (727)
..|....+++.|...+..+-+..+... ....|..+|..|...+++..|+..|+.+++ .+|....+|..
T Consensus 534 dtyae~~~we~a~~I~l~~~qka~a~~------~k~nW~~rG~yyLea~n~h~aV~~fQsALR------~dPkD~n~W~g 601 (1238)
T KOG1127|consen 534 DTYAEESTWEEAFEICLRAAQKAPAFA------CKENWVQRGPYYLEAHNLHGAVCEFQSALR------TDPKDYNLWLG 601 (1238)
T ss_pred HHhhccccHHHHHHHHHHHhhhchHHH------HHhhhhhccccccCccchhhHHHHHHHHhc------CCchhHHHHHH
Confidence 999999999999988655544443322 123466699999999999999999999975 47888899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHH
Q 004848 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517 (727)
Q Consensus 438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 517 (727)
+|.+|...|+|..|++.|.++..+ .|......+..+.+....|+|.+|+..+...+..+..-.+ .....+
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~--~q~gLa 671 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERT--GQNGLA 671 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--hhhhHH
Confidence 999999999999999999999998 8999999999999999999999999999988877544321 123457
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHHHHHH-----------------------cCC
Q 004848 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYM-----------------------LGN 573 (727)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~-----------------------~g~ 573 (727)
.++..++..+...|-+.+|..+++++++.+.-..... ......|..+|..+.- ++.
T Consensus 672 E~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~ 751 (1238)
T KOG1127|consen 672 ESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGA 751 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhccc
Confidence 7788888888888888889999988887665332111 1111122222222111 111
Q ss_pred H------HHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 004848 574 Y------SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--------RYSINEAVELFEEARSILEQECGPYHP 639 (727)
Q Consensus 574 ~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~ 639 (727)
. --|.+++-..+.+.. ....|+++|.-|+. +.+-..|+.++.+++++ ..
T Consensus 752 l~~~d~l~Lg~~c~~~hlsl~~---------~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--------~a 814 (1238)
T KOG1127|consen 752 LKKNDLLFLGYECGIAHLSLAI---------HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--------CA 814 (1238)
T ss_pred CcchhHHHHHHHHhhHHHHHhh---------ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--------hh
Confidence 0 112333333333211 13567888877765 22345899999999998 45
Q ss_pred cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 640 DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 640 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.....|..||.+ ...|++.-|..+|-+.+.. .|.....|.++|.++....+++-|. ..|.++..++|.
T Consensus 815 nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s--------ep~~~~~W~NlgvL~l~n~d~E~A~-~af~~~qSLdP~ 882 (1238)
T KOG1127|consen 815 NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--------EPTCHCQWLNLGVLVLENQDFEHAE-PAFSSVQSLDPL 882 (1238)
T ss_pred ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--------cccchhheeccceeEEecccHHHhh-HHHHhhhhcCch
Confidence 555577777776 5557888888888887755 5777778888888888888888888 888888888886
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.70 E-value=6.8e-15 Score=144.01 Aligned_cols=207 Identities=15% Similarity=0.124 Sum_probs=173.2
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q 004848 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (727)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (727)
+....+..+..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 95 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-- 95 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Confidence 34456778899999999999999999999999887 67778899999999999999999999999999883
Q ss_pred CCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586 (727)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 586 (727)
+.....+..+|.++...|++++|+.++++++.... .......+..+|.++...|++++|..++.+++.
T Consensus 96 -------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 96 -------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL-----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred -------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22345788899999999999999999999987421 122245677899999999999999999999988
Q ss_pred HHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004848 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666 (727)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 666 (727)
... ....++..+|.++...|++++|..++++++.. .|.....+..++.++...|+.++|..+.+
T Consensus 164 ~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 164 IDP--------QRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred hCc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 621 12457888999999999999999999999987 45556677788999999999999999887
Q ss_pred HHHHH
Q 004848 667 FVVGI 671 (727)
Q Consensus 667 ~al~~ 671 (727)
.+...
T Consensus 228 ~~~~~ 232 (234)
T TIGR02521 228 QLQKL 232 (234)
T ss_pred HHHhh
Confidence 76543
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.70 E-value=4.5e-15 Score=133.01 Aligned_cols=208 Identities=17% Similarity=0.156 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004848 306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (727)
Q Consensus 306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (727)
....+...||.-|+..|++..|...+++||+. +|....+|..+|.+|...|+.+.|.+.|++|+.+.|+.++
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd 104 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD 104 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc
Confidence 34567889999999999999999999999999 8999999999999999999999999999999999998874
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004848 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (727)
Q Consensus 386 ~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (727)
++++.|..++.+|++++|..+|++|+. .+.-+....++.++|.|..+.|+++.|..+|++++++
T Consensus 105 --------VLNNYG~FLC~qg~~~eA~q~F~~Al~----~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---- 168 (250)
T COG3063 105 --------VLNNYGAFLCAQGRPEEAMQQFERALA----DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---- 168 (250)
T ss_pred --------hhhhhhHHHHhCCChHHHHHHHHHHHh----CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh----
Confidence 599999999999999999999999975 3455677889999999999999999999999999998
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 004848 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (727)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (727)
+|........++..++..|+|..|..++++...... ..+..+.....+-...|+-+.|-.+-.+...
T Consensus 169 ----dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~---------~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 169 ----DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG---------AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred ----CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc---------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888899999999999999999999999988766521 2355666667777888999888887777666
Q ss_pred HHHhC
Q 004848 546 IYNDA 550 (727)
Q Consensus 546 ~~~~~ 550 (727)
.+|..
T Consensus 236 ~fP~s 240 (250)
T COG3063 236 LFPYS 240 (250)
T ss_pred hCCCc
Confidence 66544
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.70 E-value=6.1e-14 Score=146.84 Aligned_cols=333 Identities=13% Similarity=0.020 Sum_probs=236.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCC
Q 004848 309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS 388 (727)
Q Consensus 309 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 388 (727)
..+..+|.++...|+.+.+...+.++...... +..........+.++...|++++|...+++++...|...
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~---- 77 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL---- 77 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----
Confidence 35888999999999999998888888877533 344556677889999999999999999999998876542
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004848 389 LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE 468 (727)
Q Consensus 389 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 468 (727)
.++.. +..+...|++..+.....+++.. ..+..+.....+..+|.++...|++++|+..+++++++
T Consensus 78 ----~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------- 143 (355)
T cd05804 78 ----LALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL------- 143 (355)
T ss_pred ----HHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------
Confidence 22333 55566666555555555544433 34567777788889999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 004848 469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (727)
Q Consensus 469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (727)
.|....++..+|.++...|++++|+.++++++..... ........+..++.++...|++++|+..|++++...+
T Consensus 144 -~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 144 -NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred -CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 6777889999999999999999999999999987432 1223345677899999999999999999999864422
Q ss_pred hCCCCCccHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004848 549 DAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA 626 (727)
Q Consensus 549 ~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 626 (727)
. .......+. .+...+...|....+..+ +.+.......... ..........+.++...|+.++|...++..
T Consensus 218 ~----~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l 290 (355)
T cd05804 218 E----SDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD--HGLAFNDLHAALALAGAGDKDALDKLLAAL 290 (355)
T ss_pred C----CChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc--ccchHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 1 111111111 223333444543333222 2222222221111 112223345788889999999999999998
Q ss_pred HHHHHHhc-CCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 004848 627 RSILEQEC-GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677 (727)
Q Consensus 627 l~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g 677 (727)
........ .........+....|.++...|++++|+..+..++.+...+.|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~gg 342 (355)
T cd05804 291 KGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGG 342 (355)
T ss_pred HHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 77655410 0012334557788899999999999999999999998865554
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.69 E-value=2e-14 Score=150.52 Aligned_cols=339 Identities=16% Similarity=0.104 Sum_probs=239.1
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccch
Q 004848 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296 (727)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 296 (727)
+|+.+..+..+|..+...|+ ++.|...+.++....... ..........+.++...|++++|...+++++...
T Consensus 2 dp~~~~a~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~- 73 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGE-RPAAAAKAAAAAQALAAR------ATERERAHVEALSAWIAGDLPKALALLEQLLDDY- 73 (355)
T ss_pred CCccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-
Confidence 78999999999999999986 899988888887765322 2334556678999999999999999999999875
Q ss_pred hccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004848 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA 376 (727)
Q Consensus 297 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 376 (727)
+.+.. ++.. +..+...|.+..+.....+++.. ....+|....++..+|.++...|++++|+..++++
T Consensus 74 ----P~~~~----a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 74 ----PRDLL----ALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred ----CCcHH----HHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33332 2333 55666666666555555555543 23446888888899999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004848 377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456 (727)
Q Consensus 377 l~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 456 (727)
+.+.|... .++..+|.++...|++++|+.++.+++..... ........+..+|.++...|++++|+..|+
T Consensus 141 l~~~p~~~--------~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 141 LELNPDDA--------WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred HhhCCCCc--------HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99887653 56889999999999999999999998764322 122334567789999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHH--HHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHH
Q 004848 457 KALTAFKTNKGENHPAVASV--FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE 534 (727)
Q Consensus 457 ~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 534 (727)
+++... +..+..... ...+...+...|....+... +.+........+. +.........+.++...|+.+
T Consensus 211 ~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~ 281 (355)
T cd05804 211 THIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD---HGLAFNDLHAALALAGAGDKD 281 (355)
T ss_pred HHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc---ccchHHHHHHHHHHhcCCCHH
Confidence 986431 001111111 11223334444543333332 2222221111111 112222246888889999999
Q ss_pred HHHHHHHHHHHHHHhC--CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004848 535 QAIKLLQKALKIYNDA--PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK 595 (727)
Q Consensus 535 ~A~~~~~~al~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 595 (727)
+|...+.......... .+.......+....+.++...|++++|...+..++.+...+|+.+
T Consensus 282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~ 344 (355)
T cd05804 282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSH 344 (355)
T ss_pred HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 9999999888776551 022223345667789999999999999999999999998888764
No 78
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=1.1e-13 Score=145.56 Aligned_cols=303 Identities=13% Similarity=0.072 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 004848 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (727)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (727)
+...+.-|......|+|++|.+.+.++-+. .+. + ...+...+.+....|+++.|..+|.++... .+
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~----~~~--p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~------~~ 149 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADH----AEQ--P--VVNYLLAAEAAQQRGDEARANQHLERAAEL------AD 149 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----ccc--h--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CC
Confidence 344566677777889999999776654332 111 1 223445566779999999999999998642 22
Q ss_pred hH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC
Q 004848 430 EV-ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (727)
Q Consensus 430 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (727)
.. .......+.++...|++++|+..+++..+. .|....++..++.+|...|++++|+..+.+..+....
T Consensus 150 ~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~-- 219 (398)
T PRK10747 150 NDQLPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG-- 219 (398)
T ss_pred cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC--
Confidence 22 223334589999999999999999999887 7888899999999999999999999999988776211
Q ss_pred CCCChHhHH----HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848 509 PGVPPEEIA----SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA 584 (727)
Q Consensus 509 ~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 584 (727)
+..... .++..+........+ ...+.+..+..+.. .+....+...++..+...|+.++|...++++
T Consensus 220 ---~~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~ 289 (398)
T PRK10747 220 ---DEEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDG 289 (398)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 122222 122222222222222 22333333322221 1122467788999999999999999999998
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHH
Q 004848 585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEI 664 (727)
Q Consensus 585 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 664 (727)
++. .. ++ ......+. ...++++++++.+++.++. +|+....+..+|.++...|++++|..+
T Consensus 290 l~~-----~~-~~---~l~~l~~~--l~~~~~~~al~~~e~~lk~--------~P~~~~l~l~lgrl~~~~~~~~~A~~~ 350 (398)
T PRK10747 290 LKR-----QY-DE---RLVLLIPR--LKTNNPEQLEKVLRQQIKQ--------HGDTPLLWSTLGQLLMKHGEWQEASLA 350 (398)
T ss_pred Hhc-----CC-CH---HHHHHHhh--ccCCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 873 11 11 11122222 3458999999999999988 899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 004848 665 LEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (727)
Q Consensus 665 ~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (727)
|+++++. +|+.. .+..|+.++.+.|+.++|. ++|++++.+.
T Consensus 351 le~al~~--------~P~~~-~~~~La~~~~~~g~~~~A~-~~~~~~l~~~ 391 (398)
T PRK10747 351 FRAALKQ--------RPDAY-DYAWLADALDRLHKPEEAA-AMRRDGLMLT 391 (398)
T ss_pred HHHHHhc--------CCCHH-HHHHHHHHHHHcCCHHHHH-HHHHHHHhhh
Confidence 9999986 56654 4568999999999999999 9999998865
No 79
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=1.1e-13 Score=129.88 Aligned_cols=305 Identities=13% Similarity=0.115 Sum_probs=238.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 004848 312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391 (727)
Q Consensus 312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 391 (727)
+..|.-+.-..+.++|+..|...++. +|...++...||.+|...|..+.|+.+-+..+.. |+. .....
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdl---T~~qr 106 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDL---TFEQR 106 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCC---chHHH
Confidence 34566677788999999999999987 7999999999999999999999999987765543 222 23345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004848 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (727)
Q Consensus 392 a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (727)
..++..||.-|...|-++.|...|..... .......++..|..+|....+|++|++..++...+-.+. ...
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~d------e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~---~~~ 177 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVD------EGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT---YRV 177 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhc------chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc---chh
Confidence 67899999999999999999999987642 244455678889999999999999999988777763322 256
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC
Q 004848 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (727)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (727)
..+..|..||..+....+++.|+..+.+|++. ++..+.+-..+|.++...|+|+.|++.++.+++..+..
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa---------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y- 247 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQA---------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY- 247 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh---------CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH-
Confidence 78889999999999999999999999999998 44556778889999999999999999999998865544
Q ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004848 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631 (727)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 631 (727)
+..+...|..+|..+|+.++.+..+.++.+.... ..+...++.+-....-.+.|..++.+-+..
T Consensus 248 -----l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g---------~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-- 311 (389)
T COG2956 248 -----LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG---------ADAELMLADLIELQEGIDAAQAYLTRQLRR-- 311 (389)
T ss_pred -----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC---------ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--
Confidence 4678888999999999999999999998875321 234455666666666778888888877776
Q ss_pred HhcCCCCccHHHHHHHHHHHHHH---cCChHHHHHHHHHHHH
Q 004848 632 QECGPYHPDTLGVYSNLAGTYDA---IGRLDDAIEILEFVVG 670 (727)
Q Consensus 632 ~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~ 670 (727)
+|.....+. |...... -|...+.+..++..+.
T Consensus 312 ------~Pt~~gf~r-l~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 312 ------KPTMRGFHR-LMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ------CCcHHHHHH-HHHhhhccccccchhhhHHHHHHHHH
Confidence 787664443 3333322 3445566666666554
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.68 E-value=1.1e-14 Score=146.29 Aligned_cols=224 Identities=19% Similarity=0.114 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHH
Q 004848 238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT 317 (727)
Q Consensus 238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 317 (727)
.+.++..+.+++...+ ......+..++.+|.+|...|++++|+..|++++++. ++++ .+|+.+|.+
T Consensus 42 ~e~~i~~~~~~l~~~~-----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-----P~~~----~a~~~lg~~ 107 (296)
T PRK11189 42 QEVILARLNQILASRD-----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-----PDMA----DAYNYLGIY 107 (296)
T ss_pred HHHHHHHHHHHHcccc-----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----CCCH----HHHHHHHHH
Confidence 6777777777775321 1224457889999999999999999999999999985 4444 359999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004848 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL 397 (727)
Q Consensus 318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~ 397 (727)
+...|++++|+..|++++++ +|....++.++|.++...|++++|+..|++++.+.|... . ...
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-----~----~~~ 170 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-----Y----RAL 170 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----H----HHH
Confidence 99999999999999999999 789999999999999999999999999999999876542 0 111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004848 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF 477 (727)
Q Consensus 398 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 477 (727)
...+....+++++|+..|.++.... ++. .+ ..+.++...|++..+ ..+..+.+...... ...|....+|
T Consensus 171 ~~~l~~~~~~~~~A~~~l~~~~~~~-----~~~---~~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~~~ea~ 239 (296)
T PRK11189 171 WLYLAESKLDPKQAKENLKQRYEKL-----DKE---QW-GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAERLCETY 239 (296)
T ss_pred HHHHHHccCCHHHHHHHHHHHHhhC-----Ccc---cc-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHHHHHHH
Confidence 1223456789999999997765321 111 11 134555566776544 23333332110000 0045667899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 478 VRLADMYNRTGKLRESKSYCENALRI 503 (727)
Q Consensus 478 ~~la~~~~~~g~~~~A~~~~~~al~~ 503 (727)
+.+|.++...|++++|+.+|++++..
T Consensus 240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 240 FYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999988
No 81
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=3e-13 Score=126.87 Aligned_cols=284 Identities=14% Similarity=0.152 Sum_probs=226.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-ChhHHHH
Q 004848 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ-DAEVASV 434 (727)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 434 (727)
-|.-+.-..+.++|+..|...++..+... .+...||.+|...|..+.|+...+..+. ..+. ......+
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~--------e~~ltLGnLfRsRGEvDRAIRiHQ~L~~---spdlT~~qr~lA 109 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETF--------EAHLTLGNLFRSRGEVDRAIRIHQTLLE---SPDLTFEQRLLA 109 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhh--------HHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCCchHHHHHH
Confidence 45556667889999999999998665543 5689999999999999999998765432 1111 2345667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChH
Q 004848 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514 (727)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 514 (727)
+..||.-|...|-++.|...|....+. ......++..|..+|....+|++|+...++...+-.+ ....
T Consensus 110 l~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q----~~~~ 177 (389)
T COG2956 110 LQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ----TYRV 177 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc----cchh
Confidence 889999999999999999999988775 3445678899999999999999999999988887433 3356
Q ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004848 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594 (727)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 594 (727)
.++..|..||..+....+.+.|+..+.+|++..++. ..+-..+|.++...|+|..|++.++.+++-
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c-------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ------- 243 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQADKKC-------VRASIILGRVELAKGDYQKAVEALERVLEQ------- 243 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc-------eehhhhhhHHHHhccchHHHHHHHHHHHHh-------
Confidence 788999999999999999999999999999987766 355667899999999999999999998875
Q ss_pred CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004848 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE 674 (727)
Q Consensus 595 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 674 (727)
++.+...++..|..+|.+.|+.++.+.++.++.+. .+. ..+...++..-....-.+.|..++.+-+..
T Consensus 244 n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--------~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--- 311 (389)
T COG2956 244 NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--------NTG-ADAELMLADLIELQEGIDAAQAYLTRQLRR--- 311 (389)
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------cCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhh---
Confidence 56678899999999999999999999999999886 332 235566777777777778888887776653
Q ss_pred hcCCCChhHHHHHHHHHHHH
Q 004848 675 KLGTANPDVDDEKRRLAELL 694 (727)
Q Consensus 675 ~~g~~~p~~~~~~~~La~~~ 694 (727)
+|.....+ +|....
T Consensus 312 -----~Pt~~gf~-rl~~~~ 325 (389)
T COG2956 312 -----KPTMRGFH-RLMDYH 325 (389)
T ss_pred -----CCcHHHHH-HHHHhh
Confidence 67754443 444433
No 82
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=3.5e-14 Score=149.19 Aligned_cols=308 Identities=13% Similarity=0.053 Sum_probs=217.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccC
Q 004848 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (727)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (727)
+...+..|...+..|+ |++|.+...++-+. .+.| ...+...+.+....|+++.|..+|.++.+..
T Consensus 84 ~~~~~~~gl~a~~eGd-~~~A~k~l~~~~~~-------~~~p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~----- 148 (398)
T PRK10747 84 ARKQTEQALLKLAEGD-YQQVEKLMTRNADH-------AEQP--VVNYLLAAEAAQQRGDEARANQHLERAAELA----- 148 (398)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHhc-------ccch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----
Confidence 3455677888888897 88888666654432 1122 2224444666699999999999999998764
Q ss_pred ccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004848 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380 (727)
Q Consensus 301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 380 (727)
++.. .......+.++...|++++|+..++++++. .|....++..++.+|...|++++|+..+.+..+..
T Consensus 149 ~~~~---~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 149 DNDQ---LPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred Ccch---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 2221 122445689999999999999999999988 78889999999999999999999999998887654
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848 381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT 460 (727)
Q Consensus 381 ~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 460 (727)
.............++..+........+-+....+++..- ...+....+...++..+...|+.++|...++++++
T Consensus 218 ~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp------~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 218 VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQS------RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCC------HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 321100000000122222222222222223333222211 11234466778899999999999999999999987
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHH
Q 004848 461 AFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL 540 (727)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 540 (727)
. .++. ......+. ...+++++++..+++.++. +|.....+..+|.++...+++++|..+|
T Consensus 292 ~--------~~~~-~l~~l~~~--l~~~~~~~al~~~e~~lk~---------~P~~~~l~l~lgrl~~~~~~~~~A~~~l 351 (398)
T PRK10747 292 R--------QYDE-RLVLLIPR--LKTNNPEQLEKVLRQQIKQ---------HGDTPLLWSTLGQLLMKHGEWQEASLAF 351 (398)
T ss_pred c--------CCCH-HHHHHHhh--ccCCChHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4 2221 22222222 2449999999999998877 4555778899999999999999999999
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848 541 QKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (727)
Q Consensus 541 ~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (727)
+++++..|+. ..+..++.++...|+.++|..+|++++.+.
T Consensus 352 e~al~~~P~~--------~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 352 RAALKQRPDA--------YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHhcCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999886544 456689999999999999999999998764
No 83
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=3.5e-15 Score=150.72 Aligned_cols=270 Identities=17% Similarity=0.175 Sum_probs=206.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004848 396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS 475 (727)
Q Consensus 396 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 475 (727)
+..|..+++.|+..+|.-.|+.|+. .+|..+.+|..||.+....++-..|+..+++++++ +|....
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVk------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~Nle 354 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVK------QDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNLE 354 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccHH
Confidence 5678999999999999999999875 68999999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCC-CCC-hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCC
Q 004848 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVP-GVP-PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ 553 (727)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 553 (727)
++..||..|...|.-.+|+.++.+-+..-.+... ... ...... ...-......+..-.++|-.+....+..
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~~~~~~--- 427 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAARQLPTK--- 427 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHHhCCCC---
Confidence 9999999999999999999999998776311000 000 000000 0000000011122223333333332211
Q ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004848 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633 (727)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (727)
.-+.+...||.+|...|+|++|+.+|+.|+.. .+....+|+.||-.+....+.++|+..|.+|+++
T Consensus 428 --~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL---- 493 (579)
T KOG1125|consen 428 --IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL---- 493 (579)
T ss_pred --CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc----
Confidence 12467889999999999999999999999986 3446789999999999999999999999999999
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHhCChhHHH
Q 004848 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD--VDDEKRRLAELLKEAGRVRSRK 704 (727)
Q Consensus 634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~--~~~~~~~La~~~~~~g~~~~A~ 704 (727)
.|.++.++++||.+|..+|.|++|..+|-.||.+.+...+..... .-.+|..|-.++...++.+-+.
T Consensus 494 ----qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 494 ----QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred ----CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 999999999999999999999999999999999987643321111 2356666667777777777444
No 84
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5.8e-15 Score=142.67 Aligned_cols=300 Identities=17% Similarity=0.153 Sum_probs=240.7
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004848 306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (727)
Q Consensus 306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (727)
....-....|..++...+|.+|+..|..|+++ .|+.+..|.+.+.+++..|+|++|.-.+++.+++.+...
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~--------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~- 117 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDM--------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS- 117 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHh--------CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc-
Confidence 34445677889999999999999999999999 588899999999999999999999999999988876554
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004848 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (727)
Q Consensus 386 ~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (727)
..+...+.++...++..+|...++.. . + + ....|+..+++.+...
T Consensus 118 -------k~~~r~~~c~~a~~~~i~A~~~~~~~---------~-----~-------~----~~anal~~~~~~~~s~--- 162 (486)
T KOG0550|consen 118 -------KGQLREGQCHLALSDLIEAEEKLKSK---------Q-----A-------Y----KAANALPTLEKLAPSH--- 162 (486)
T ss_pred -------ccccchhhhhhhhHHHHHHHHHhhhh---------h-----h-------h----HHhhhhhhhhcccccc---
Confidence 23666777887777777777766411 0 0 0 1223333333333321
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 004848 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (727)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (727)
. ..|....+...-+.++...|++++|...--..+++ ++....++...|.++...++.+.|+..|++++.
T Consensus 163 s--~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl---------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ 231 (486)
T KOG0550|consen 163 S--REPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL---------DATNAEALYVRGLCLYYNDNADKAINHFQQALR 231 (486)
T ss_pred c--CCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc---------ccchhHHHHhcccccccccchHHHHHHHhhhhc
Confidence 0 13556677777899999999999999887777777 455678888999999999999999999999999
Q ss_pred HHHhCCCCC-----ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHH
Q 004848 546 IYNDAPGQQ-----STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAV 620 (727)
Q Consensus 546 ~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 620 (727)
+.|+..... ......+..-|.-.++.|++..|.++|..++.+-+. +....+.+|.+.|.+...+|+..+|+
T Consensus 232 ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eai 307 (486)
T KOG0550|consen 232 LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAI 307 (486)
T ss_pred cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhh
Confidence 987653221 233455677889999999999999999999987443 34456889999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848 621 ELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (727)
Q Consensus 621 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (727)
.....|+.+ ++..+.++...|.|+..+++|++|.+.|++|++..
T Consensus 308 sdc~~Al~i--------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 308 SDCNEALKI--------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hhhhhhhhc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999 99999999999999999999999999999999873
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=2.8e-15 Score=151.39 Aligned_cols=269 Identities=16% Similarity=0.090 Sum_probs=202.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchH
Q 004848 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV 349 (727)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 349 (727)
..|..+++.|+..+|.-.|+.++... |. .+.+|..||.+....++-..|+..+++|+++ +|..
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqd-----P~----haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N 352 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQD-----PQ----HAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTN 352 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhC-----hH----HHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence 46999999999999999999999875 33 4556999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 004848 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (727)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (727)
..++..||..|...|.-.+|+.++.+-+...+.......... .-......-......+..-.++|..+. ...+. .
T Consensus 353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~-~~~~~~~~s~~~~~~l~~i~~~fLeaa---~~~~~-~ 427 (579)
T KOG1125|consen 353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE-NEDFENTKSFLDSSHLAHIQELFLEAA---RQLPT-K 427 (579)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc-cccccCCcCCCCHHHHHHHHHHHHHHH---HhCCC-C
Confidence 999999999999999999999999999876644321100000 000000000000001222233333332 22221 2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCC
Q 004848 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (727)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (727)
....+...||.+|...|+|++|+.+|+.||.. .|.....|..||-.+..-.+..+|+..|.+|+++
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL------ 493 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL------ 493 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc------
Confidence 34567889999999999999999999999998 8999999999999999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHHcCCHHHH
Q 004848 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS---TVAGIEAQMGVMYYMLGNYSDS 577 (727)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A 577 (727)
.|.++++.++||..++.+|.|++|.++|-.||.+.+...+... .--.+|..|-.++...++.+-+
T Consensus 494 ---qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 494 ---QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred ---CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 6778899999999999999999999999999999887433221 1123444444555555655533
No 86
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.6e-14 Score=139.71 Aligned_cols=291 Identities=19% Similarity=0.160 Sum_probs=232.5
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004848 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (727)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (727)
..+.-....|..++.... |..|+..|..|+.++ |+.+..|.+.+.+++..|+|++|.-..++.+++..
T Consensus 47 ~~Ae~~k~~gn~~yk~k~-Y~nal~~yt~Ai~~~---------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-- 114 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKT-YGNALKNYTFAIDMC---------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD-- 114 (486)
T ss_pred HHHHHHHhhcchHHHHhh-HHHHHHHHHHHHHhC---------ccchhhhchhHHHHHHHHhHhhcccchhhheecCC--
Confidence 455667788889999986 999999999999986 44578899999999999999999999999998852
Q ss_pred cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--------HHHHHHhCC--CCchHHHHHHHHHHHHHHhcCHHH
Q 004848 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGL--------EVQKQVLGE--TDPRVGETCRYLAEAHVQALQFSE 368 (727)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~ 368 (727)
..+ ..+...+.++..+++..+|...|+..- .....+... ..|....+...-+.|+...|++++
T Consensus 115 ---~~~----k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~ 187 (486)
T KOG0550|consen 115 ---GFS----KGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDE 187 (486)
T ss_pred ---Ccc----ccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchh
Confidence 222 236677888888888777776655221 111111111 125556677778999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC------CChhHHHHHHHHHHHH
Q 004848 369 AQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND------QDAEVASVDCSIGDTY 442 (727)
Q Consensus 369 A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~la~~~ 442 (727)
|...--..+++.+.+. .+++..|.++...++.+.|+.+|++++.+-.... ..+.....+...|.-.
T Consensus 188 a~~ea~~ilkld~~n~--------~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~ 259 (486)
T KOG0550|consen 188 AQSEAIDILKLDATNA--------EALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDA 259 (486)
T ss_pred HHHHHHHHHhcccchh--------HHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhH
Confidence 9999888888876653 5688899999999999999999999986432211 1244566677889999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHH
Q 004848 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD 522 (727)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 522 (727)
++.|+|.+|.+.|..+|.+-.. +....+.+|.++|.+..++|+..+|+..++.++.+ ++....++..
T Consensus 260 fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---------D~syikall~ 326 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---------DSSYIKALLR 326 (486)
T ss_pred hhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc---------CHHHHHHHHH
Confidence 9999999999999999998211 12346788999999999999999999999999999 7788999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848 523 VSSIYESMNELEQAIKLLQKALKIYND 549 (727)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (727)
.|.++..+++|++|++.|+++++....
T Consensus 327 ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 327 RANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999998655
No 87
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=6.4e-12 Score=127.34 Aligned_cols=456 Identities=13% Similarity=0.051 Sum_probs=289.7
Q ss_pred cCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004848 192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI 271 (727)
Q Consensus 192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l 271 (727)
........+++|.++...........|+...++.....++.+.++ |++|+...+.-... .......+..
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~k-y~~ALk~ikk~~~~----------~~~~~~~fEK 85 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDK-YEDALKLIKKNGAL----------LVINSFFFEK 85 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhH-HHHHHHHHHhcchh----------hhcchhhHHH
Confidence 344445556667766655566666778899999999999999987 77776443322110 0011122577
Q ss_pred HHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-------------
Q 004848 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ------------- 338 (727)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------- 338 (727)
+.|.++++..++|+..++-+-.. +. .++...|.+++++|+|++|+..|+..++-.
T Consensus 86 AYc~Yrlnk~Dealk~~~~~~~~--------~~----~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~ 153 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKGLDRL--------DD----KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL 153 (652)
T ss_pred HHHHHHcccHHHHHHHHhccccc--------ch----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 99999999999999999822211 11 136678999999999999999999874321
Q ss_pred ----------HHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHH
Q 004848 339 ----------KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA-------SLEEAADRRLMGLI 401 (727)
Q Consensus 339 ----------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~a~~~~~l~~~ 401 (727)
.+..........+.+++.|.++...|+|.+|++.++++++++....... ..+...+...|+.+
T Consensus 154 a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 154 AVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred HHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 0111111223567889999999999999999999999988876543321 12345678889999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHH-HHHHHHH--------HHHHHHHHhcCCCChh
Q 004848 402 CETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD-EAGFAYQ--------KALTAFKTNKGENHPA 472 (727)
Q Consensus 402 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~--------~al~~~~~~~~~~~~~ 472 (727)
+..+|+.++|...|...+. ....+.+..+.+-+++-.+-....-++ .++..++ .++..+. +..
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~--~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls------~~q 305 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIK--RNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLS------KKQ 305 (652)
T ss_pred HHHhcchHHHHHHHHHHHH--hcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHH------HHH
Confidence 9999999999999987764 233445556666666544332222222 1111111 1111110 223
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCC
Q 004848 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (727)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (727)
...++.+.+.+.+..+..+.+.+..... ++..+.....++..-+..... ..+.+|.+++...-+-.+.
T Consensus 306 k~~i~~N~~lL~l~tnk~~q~r~~~a~l--------p~~~p~~~~~~ll~~~t~~~~-~~~~ka~e~L~~~~~~~p~--- 373 (652)
T KOG2376|consen 306 KQAIYRNNALLALFTNKMDQVRELSASL--------PGMSPESLFPILLQEATKVRE-KKHKKAIELLLQFADGHPE--- 373 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhC--------CccCchHHHHHHHHHHHHHHH-HHHhhhHHHHHHHhccCCc---
Confidence 3445566666666666665554443321 222233333333333332222 2667777776655443222
Q ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848 553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (727)
Q Consensus 553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (727)
....+...++.+...+|+++.|+..+...+..+......- .+...+-..+-.++...++.+-|...+.+|+..++.
T Consensus 374 ---~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~ 449 (652)
T KOG2376|consen 374 ---KSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRK 449 (652)
T ss_pred ---hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 2245677889999999999999999985553222111100 011223333445677777888899999999998877
Q ss_pred hcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHH
Q 004848 633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK 704 (727)
Q Consensus 633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~ 704 (727)
.... .+.....+..++.+-.+.|+-++|...+++.++. +|...+++..|...|... +.+.|.
T Consensus 450 ~~t~-s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--------n~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 450 QQTG-SIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--------NPNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred hccc-chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHhc-CHHHHH
Confidence 5443 3555557778888888899999999999999976 677888888888887765 555554
No 88
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=4.2e-12 Score=120.36 Aligned_cols=416 Identities=15% Similarity=0.063 Sum_probs=232.6
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHH
Q 004848 232 ISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGH 311 (727)
Q Consensus 232 ~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 311 (727)
....+ |..|+.+++-.+..-+ .+....-..+|.|++.+|+|++|+..|+-+.... ++ ....+
T Consensus 33 ls~rD-ytGAislLefk~~~~~--------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-------~~--~~el~ 94 (557)
T KOG3785|consen 33 LSNRD-YTGAISLLEFKLNLDR--------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-------DA--PAELG 94 (557)
T ss_pred Hhccc-chhHHHHHHHhhccch--------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-------CC--Ccccc
Confidence 33444 8888888777664321 1122345568999999999999999999887632 11 22358
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHH---------HhCCC---------CchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 004848 312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQ---------VLGET---------DPRVGETCRYLAEAHVQALQFSEAQKFC 373 (727)
Q Consensus 312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~ 373 (727)
.+||.|++.+|.|.+|...-.++-+.-.. .+++. -.+..+-...||.+++..-.|.+|++.|
T Consensus 95 vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 95 VNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998877665322000 00000 0011122234444555555555555555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHH
Q 004848 374 QMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGF 453 (727)
Q Consensus 374 ~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 453 (727)
.+.+.-.+... ..-..++.+|..+.-|+-+.+.+.--++ ..|+...+.+..+...+++=+-..|..
T Consensus 175 krvL~dn~ey~--------alNVy~ALCyyKlDYydvsqevl~vYL~------q~pdStiA~NLkacn~fRl~ngr~ae~ 240 (557)
T KOG3785|consen 175 KRVLQDNPEYI--------ALNVYMALCYYKLDYYDVSQEVLKVYLR------QFPDSTIAKNLKACNLFRLINGRTAED 240 (557)
T ss_pred HHHHhcChhhh--------hhHHHHHHHHHhcchhhhHHHHHHHHHH------hCCCcHHHHHHHHHHHhhhhccchhHH
Confidence 55554443322 2234455556555555555554433322 122333333334443333222222222
Q ss_pred HHHHHHHHHHHhc----------------CCC--------ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCC
Q 004848 454 AYQKALTAFKTNK----------------GEN--------HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (727)
Q Consensus 454 ~~~~al~~~~~~~----------------~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (727)
-......-..+.+ ++. -...+.+..+|...|..+++..+|..+++..
T Consensus 241 E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl--------- 311 (557)
T KOG3785|consen 241 EKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL--------- 311 (557)
T ss_pred HHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc---------
Confidence 2222111100000 000 0112344555555566666666655544321
Q ss_pred CCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ---STVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586 (727)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 586 (727)
.|..+.-+...|.++...|+--...++++-|.+.+.-. |.. -+...-...++.+++...+|++.+.++...-.
T Consensus 312 ---~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV-G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s 387 (557)
T KOG3785|consen 312 ---DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV-GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES 387 (557)
T ss_pred ---CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333345555666666666555555555444443322 111 11111233566777777888888888776554
Q ss_pred HHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004848 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666 (727)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 666 (727)
.+.. .....+++|.++...|++.+|.++|-+.-. ++-.+.......||.||...++.+-|-..+-
T Consensus 388 YF~N--------dD~Fn~N~AQAk~atgny~eaEelf~~is~-------~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 388 YFTN--------DDDFNLNLAQAKLATGNYVEAEELFIRISG-------PEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HhcC--------cchhhhHHHHHHHHhcChHHHHHHHhhhcC-------hhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 4321 124567899999999999999998876532 2223344456789999999999999988775
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 667 FVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 667 ~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+.- ...+....+..+|....+.+.+-=|. +.|..+-.+||.
T Consensus 453 k~~---------t~~e~fsLLqlIAn~CYk~~eFyyaa-KAFd~lE~lDP~ 493 (557)
T KOG3785|consen 453 KTN---------TPSERFSLLQLIANDCYKANEFYYAA-KAFDELEILDPT 493 (557)
T ss_pred hcC---------CchhHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHccCCC
Confidence 432 23344455666788888888888888 888888888887
No 89
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=2.9e-11 Score=119.10 Aligned_cols=390 Identities=11% Similarity=0.059 Sum_probs=300.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Q 004848 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (727)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (727)
...+...|..-..++++..|...|++|+... ...+..|...+.+-.+......|..++.+|+.+
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd---------~r~itLWlkYae~Emknk~vNhARNv~dRAvt~------- 136 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVD---------YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI------- 136 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc---------cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-------
Confidence 3446777888889999999999999999874 112345889999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 004848 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA 424 (727)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 424 (727)
-|..-..|+....+-..+|+...|.+.|++-+...|.. .+|......-.+....+.|...|++-+.
T Consensus 137 -lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e---------qaW~sfI~fElRykeieraR~IYerfV~---- 202 (677)
T KOG1915|consen 137 -LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE---------QAWLSFIKFELRYKEIERARSIYERFVL---- 202 (677)
T ss_pred -cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhe----
Confidence 47888889988888889999999999999999887654 4577777778888999999999988753
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (727)
Q Consensus 425 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (727)
.+|. ...|...+..-...|+..-|...|+.|++.+.. +......+...|..-..+..++.|..+|+-|+...
T Consensus 203 --~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~ 274 (677)
T KOG1915|consen 203 --VHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHI 274 (677)
T ss_pred --eccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2443 457788889999999999999999999988533 34445556666777777788888888887777653
Q ss_pred hcC---------------CCC--------------------CChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848 505 EKP---------------VPG--------------------VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (727)
Q Consensus 505 ~~~---------------~~~--------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (727)
.+. ++. ...|....+|...-.+....|+.+.-.+.|++|+.-.+.
T Consensus 275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp 354 (677)
T KOG1915|consen 275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP 354 (677)
T ss_pred CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc
Confidence 321 000 012222345666667777789999999999999876554
Q ss_pred CCCCCccHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004848 550 APGQQSTVAGIEAQMGVMY---YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA 626 (727)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 626 (727)
..........+|..+-.++ ....+.+.+.+.|+.++++.+ .....++.+|...|....++.+...|.+.+-.|
T Consensus 355 ~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP----HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 355 ASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIP----HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC----cccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3222222222333333332 346789999999999998743 234567889999999999999999999999999
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHH
Q 004848 627 RSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQ 706 (727)
Q Consensus 627 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~ 706 (727)
+-. .|.. .+......+-.++++++....+|++.++. .|.+..++...|.+-..+|+.+.|. .
T Consensus 431 IG~--------cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~LgdtdRaR-a 492 (677)
T KOG1915|consen 431 IGK--------CPKD-KLFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTDRAR-A 492 (677)
T ss_pred hcc--------CCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHHHHH-H
Confidence 887 4543 25556667778889999999999999965 7999999999999999999999999 9
Q ss_pred HHHHHHHH
Q 004848 707 SLETLLDA 714 (727)
Q Consensus 707 ~l~~al~~ 714 (727)
.|+-|+.-
T Consensus 493 ifelAi~q 500 (677)
T KOG1915|consen 493 IFELAISQ 500 (677)
T ss_pred HHHHHhcC
Confidence 99988763
No 90
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=4.1e-12 Score=120.47 Aligned_cols=412 Identities=12% Similarity=0.089 Sum_probs=267.5
Q ss_pred cccccccccccccccc-cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004848 197 MKKRKGKLHKGQDVSE-AGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY 275 (727)
Q Consensus 197 ~~~~~~~~~a~~~~~~-~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~ 275 (727)
+....+|..|+..+.- ...+..+....-+.+|.+++..|+ |++|+..|.-+... .+++ +....+||.|+
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgd-Y~~Al~~Y~~~~~~------~~~~---~el~vnLAcc~ 101 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGD-YEEALNVYTFLMNK------DDAP---AELGVNLACCK 101 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhcc-HHHHHHHHHHHhcc------CCCC---cccchhHHHHH
Confidence 4445566666622211 122222334555668899999997 88888888776541 2222 45578899999
Q ss_pred HHcCChhHHHHHHHHhcccchh---------ccCccchH--------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004848 276 CSLGQYNEAIPVLEQSIEIPVI---------EEGQEHAL--------AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ 338 (727)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 338 (727)
+-+|.|.+|.....++-+.... ..+.+... ....-...||.+.+..-.|++|+..|.+++.-
T Consensus 102 FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d- 180 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD- 180 (557)
T ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 9999999999988887653210 00111110 01122456777888888899999999888876
Q ss_pred HHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc--CCHH-------
Q 004848 339 KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK--GDHE------- 409 (727)
Q Consensus 339 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~--g~~~------- 409 (727)
+|.....-.++|.||++..-|+-+.+.+.-.+...|+.. .+.+..+...++. |+..
T Consensus 181 -------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt--------iA~NLkacn~fRl~ngr~ae~E~k~l 245 (557)
T KOG3785|consen 181 -------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST--------IAKNLKACNLFRLINGRTAEDEKKEL 245 (557)
T ss_pred -------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH--------HHHHHHHHHHhhhhccchhHHHHHHH
Confidence 688888888999999999999999888887777665542 3344444444433 2221
Q ss_pred ---------HHHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004848 410 ---------AALEHLVLASMTMIAN--------DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA 472 (727)
Q Consensus 410 ---------~A~~~~~~al~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 472 (727)
.+...++.-+-+++.. +.-.....+..++...|..+++..+|+.+++.. .|.
T Consensus 246 adN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl-----------~Pt 314 (557)
T KOG3785|consen 246 ADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL-----------DPT 314 (557)
T ss_pred HhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc-----------CCC
Confidence 1111111100000000 011223566788888999999999998765432 677
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCC
Q 004848 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (727)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (727)
.+.-+...|.++...|+--...+.++.|-..++-.......-+.......+|.+++...++++.+.++......+...
T Consensus 315 tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~Nd-- 392 (557)
T KOG3785|consen 315 TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTND-- 392 (557)
T ss_pred ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--
Confidence 888888999999999988777777777766655432222222223344567778888889999999888766665433
Q ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848 553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (727)
Q Consensus 553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (727)
-...++++.++...|++.+|.+.|-+.-.. .-.........||+||...++++-|-.++-+.-.
T Consensus 393 -----D~Fn~N~AQAk~atgny~eaEelf~~is~~-------~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---- 456 (557)
T KOG3785|consen 393 -----DDFNLNLAQAKLATGNYVEAEELFIRISGP-------EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---- 456 (557)
T ss_pred -----chhhhHHHHHHHHhcChHHHHHHHhhhcCh-------hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC----
Confidence 134578999999999999999998765321 1111234556789999999999999887765321
Q ss_pred hcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004848 633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV 668 (727)
Q Consensus 633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 668 (727)
..+....+..+|..+...+.+=-|...|...
T Consensus 457 -----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 457 -----PSERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred -----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 2334445667788788888776666666544
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.56 E-value=1.1e-11 Score=131.15 Aligned_cols=320 Identities=14% Similarity=0.109 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC
Q 004848 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345 (727)
Q Consensus 266 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 345 (727)
.++.....++...|++++|+.+++...... ......+-..|.++..+|++++|...|...+..
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I---------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-------- 67 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQI---------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-------- 67 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhC---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence 445567888999999999999998765442 123456888999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHH
Q 004848 346 DPRVGETCRYLAEAHVQAL-----QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL-VLAS 419 (727)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~-~~al 419 (727)
+|+....+..+..+..... +.+.-..+|++.....|.... ...+...+..-..|......| ...+
T Consensus 68 NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~---------~~rl~L~~~~g~~F~~~~~~yl~~~l 138 (517)
T PF12569_consen 68 NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDA---------PRRLPLDFLEGDEFKERLDEYLRPQL 138 (517)
T ss_pred CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccc---------hhHhhcccCCHHHHHHHHHHHHHHHH
Confidence 7888888888888874433 456667777766666554321 122222222222344433333 2221
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--------CCCh-hHHHHHHHHHHHHHHcCCh
Q 004848 420 MTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG--------ENHP-AVASVFVRLADMYNRTGKL 490 (727)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~-~~~~~~~~la~~~~~~g~~ 490 (727)
...+..+..++-.+|....+..-....+...+........ ...| ...++++.+|..|...|++
T Consensus 139 --------~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~ 210 (517)
T PF12569_consen 139 --------RKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDY 210 (517)
T ss_pred --------hcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCH
Confidence 1122334444545554332222222222222222111110 1122 2357889999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH
Q 004848 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM 570 (727)
Q Consensus 491 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 570 (727)
++|+.++++|+.. .|..+..|...|.++...|++.+|...++.|..+.... -.+-...+..+++
T Consensus 211 ~~Al~~Id~aI~h---------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D-------RyiNsK~aKy~LR 274 (517)
T PF12569_consen 211 EKALEYIDKAIEH---------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD-------RYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHhc---------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh-------HHHHHHHHHHHHH
Confidence 9999999999998 56778899999999999999999999999998876543 2344566888899
Q ss_pred cCCHHHHHHHHHHHHHHHH-HhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004848 571 LGNYSDSYDSFKNAISKLR-AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (727)
Q Consensus 571 ~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (727)
.|+.++|...+..-..--. ...+.......+.....|.+|.+.|++..|+..|..+.+++.....
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999887654322100 0000011123445566799999999999999999999999888654
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.56 E-value=4e-11 Score=126.95 Aligned_cols=325 Identities=17% Similarity=0.184 Sum_probs=211.9
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhcc
Q 004848 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 299 (727)
..++++.++.++...|+ +++|+++++...... .+....+...|.++..+|++++|...|...+...
T Consensus 3 ~SE~lLY~~~il~e~g~-~~~AL~~L~~~~~~I---------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---- 68 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGD-YEEALEHLEKNEKQI---------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---- 68 (517)
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHhhhhhC---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----
Confidence 45678889999999998 999998887755432 4567778899999999999999999999999886
Q ss_pred CccchHHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHH-HHH
Q 004848 300 GQEHALAKFAGHMQLGDTYAMLG-----QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQ-KFC 373 (727)
Q Consensus 300 ~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~ 373 (727)
|++. ..+..+..+..... ..+.-..+|++....+ |.. .+...+...+..-..|.... .++
T Consensus 69 -Pdn~----~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--------p~s-~~~~rl~L~~~~g~~F~~~~~~yl 134 (517)
T PF12569_consen 69 -PDNY----DYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--------PRS-DAPRRLPLDFLEGDEFKERLDEYL 134 (517)
T ss_pred -CCcH----HHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--------ccc-cchhHhhcccCCHHHHHHHHHHHH
Confidence 3332 23555666653332 3455566666554442 221 11112222222222333322 222
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-----------CCChhHHHHHHHHHHHH
Q 004848 374 QMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN-----------DQDAEVASVDCSIGDTY 442 (727)
Q Consensus 374 ~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~~~la~~~ 442 (727)
...+ ..+-| .....+-.+|....+..-....+.......... ..+....++++.+|..|
T Consensus 135 ~~~l----~KgvP------slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhy 204 (517)
T PF12569_consen 135 RPQL----RKGVP------SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHY 204 (517)
T ss_pred HHHH----hcCCc------hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHH
Confidence 2222 22211 224444444443333222222222222221111 11223467889999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHH
Q 004848 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD 522 (727)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 522 (727)
...|++++|+.+++++++. .|..+..|...|.++-..|++.+|...++.|..+ +...-.+...
T Consensus 205 d~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L---------D~~DRyiNsK 267 (517)
T PF12569_consen 205 DYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL---------DLADRYINSK 267 (517)
T ss_pred HHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC---------ChhhHHHHHH
Confidence 9999999999999999998 8999999999999999999999999999999888 2233445667
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhH
Q 004848 523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQQS--TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF 599 (727)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 599 (727)
.+..+.+.|+.++|.+.+..-.........+-. ...+.....|.+|.+.|++..|+..|..+.+.+....+..-.+.
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH 346 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFH 346 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 788889999999998877654322111101111 22334456799999999999999999999999988766544333
No 93
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=2.6e-09 Score=105.93 Aligned_cols=462 Identities=13% Similarity=0.041 Sum_probs=303.3
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHhcccchhc
Q 004848 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG-QYNEAIPVLEQSIEIPVIE 298 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~ 298 (727)
.+...+.+|..++.--+|.+.|...+++|..+.+.+..-. .....+...|+.+|.... .+..|...+++++++.
T Consensus 45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaiels--- 119 (629)
T KOG2300|consen 45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELS--- 119 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh---
Confidence 3567788999998888899999999999999987763321 234567888999999887 8999999999999986
Q ss_pred cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH--HHHHHHhcCHHHHHHHHHHH
Q 004848 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL--AEAHVQALQFSEAQKFCQMA 376 (727)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~a 376 (727)
...|......++.|+.++.-..++..|++.+.-..+....+ -.....+++.+ +.++....+..+.......+
T Consensus 120 --q~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~----~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~ 193 (629)
T KOG2300|consen 120 --QSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHI----CFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRC 193 (629)
T ss_pred --cCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchh----hhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 44444455668899999999999999998854433322110 11122233332 33444444555566666666
Q ss_pred HHHHHhcCCCC-CHHHHH-HHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHhCCC-------------ChhH--------H
Q 004848 377 LDIHKDNGSPA-SLEEAA-DRRLMGL-ICETKGDHEAALEHLVLASMTMIANDQ-------------DAEV--------A 432 (727)
Q Consensus 377 l~~~~~~~~~~-~~~~a~-~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~~~--------~ 432 (727)
-.+........ ..+... .+..+-. .|...|+...+...+++.......... .+.. .
T Consensus 194 ~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqi 273 (629)
T KOG2300|consen 194 GQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQI 273 (629)
T ss_pred HHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhh
Confidence 55554443321 111111 2223333 345668877777766654333222111 1111 1
Q ss_pred HHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHhcCCC--Ch----hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848 433 SVDCSIGDT--YLSLSRYDEAGFAYQKALTAFKTNKGEN--HP----AVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (727)
Q Consensus 433 ~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (727)
.++..+-.+ -...|-+++|.++-++++...++....+ .| .....+-.+..+-.-.|++.+|++....+.+.+
T Consensus 274 caLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~ 353 (629)
T KOG2300|consen 274 CALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWC 353 (629)
T ss_pred HhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 111111111 1245788999999999988766654322 11 112344566777788999999999999999887
Q ss_pred hcCCCC--CChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004848 505 EKPVPG--VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK 582 (727)
Q Consensus 505 ~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 582 (727)
.+.- + --....+.+.+.+|.....-+.++.|...|..|.+..... ...+.+-.++|..|...|+-+.-.+
T Consensus 354 ~r~p-~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~----dl~a~~nlnlAi~YL~~~~~ed~y~--- 425 (629)
T KOG2300|consen 354 TRFP-TPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI----DLQAFCNLNLAISYLRIGDAEDLYK--- 425 (629)
T ss_pred HhCC-chHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH----HHHHHHHHhHHHHHHHhccHHHHHH---
Confidence 7631 1 1122345677788888888899999999999999876433 2345566789999999887554333
Q ss_pred HHHHHHHHhCCCC------chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 004848 583 NAISKLRAIGERK------SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (727)
Q Consensus 583 ~al~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 656 (727)
+++. ++..+ ....+.+++..|...+.++++.||..++.+.+++..... .+.-.+-.+..|+.+....|
T Consensus 426 -~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed--~~rL~a~~LvLLs~v~lslg 499 (629)
T KOG2300|consen 426 -ALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED--LNRLTACSLVLLSHVFLSLG 499 (629)
T ss_pred -HHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh--HHHHHHHHHHHHHHHHHHhc
Confidence 3332 22221 112355777788888999999999999999999853211 12334446778899999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCC--hhHHHHHHHH
Q 004848 657 RLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR--VRSRKAQSLE 709 (727)
Q Consensus 657 ~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~--~~~A~~~~l~ 709 (727)
+..++.....-++.+..++ +++|-.......+-.+|...|+ .+... +.+.
T Consensus 500 n~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~a~g~~~~~~e~-e~~~ 551 (629)
T KOG2300|consen 500 NTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQALGEKGNEMEN-EAFR 551 (629)
T ss_pred chHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHHHhCcchhhHHH-HHHH
Confidence 9999999999999998776 5677777777778888999998 55554 4443
No 94
>PLN02789 farnesyltranstransferase
Probab=99.51 E-value=7.4e-12 Score=125.29 Aligned_cols=231 Identities=13% Similarity=0.060 Sum_probs=185.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHhcCCCCCChHh
Q 004848 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG-KLRESKSYCENALRIYEKPVPGVPPEE 515 (727)
Q Consensus 437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~ 515 (727)
.+-.++...+++++|+..+.+++.+ +|....+|...+.++..+| ++++++.++++++.. .+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~---------npk 104 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED---------NPK 104 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH---------CCc
Confidence 3334556678999999999999998 8999999999999999998 689999999999988 344
Q ss_pred HHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004848 516 IASGLTDVSSIYESMNEL--EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (727)
Q Consensus 516 ~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (727)
...+|...+.++...|+. ++++.++.+++++.++. ..+|...+.++...|++++|+.++.++++.
T Consensus 105 nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN-------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~------ 171 (320)
T PLN02789 105 NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN-------YHAWSHRQWVLRTLGGWEDELEYCHQLLEE------ 171 (320)
T ss_pred chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------
Confidence 466788899888888874 67889999999887766 578999999999999999999999999886
Q ss_pred CCchhHHHHHHHHHHHHHHh---CCH----HHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCChHHHH
Q 004848 594 RKSAFFGVALNQMGLACVQR---YSI----NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA----IGRLDDAI 662 (727)
Q Consensus 594 ~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 662 (727)
.+....+|+..+.++... |.+ ++++.+..+++.+ +|+...+|..++.++.. .++..+|+
T Consensus 172 --d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 172 --DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred --CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence 233457888888887665 323 5788888899998 89988999999999988 45567788
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhC------------------ChhHHHHHHHHHHHHHhh
Q 004848 663 EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG------------------RVRSRKAQSLETLLDANS 716 (727)
Q Consensus 663 ~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g------------------~~~~A~~~~l~~al~~~p 716 (727)
..+.+++.. .|....++..|+.+|.... ..++|. ..++.+-+.||
T Consensus 242 ~~~~~~~~~--------~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~l~~~d~ 304 (320)
T PLN02789 242 SVCLEVLSK--------DSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQ-AVCSELEVADP 304 (320)
T ss_pred HHHHHhhcc--------cCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHH-HHHHHHHhhCc
Confidence 888887653 5777889999999998643 235677 77777655555
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.47 E-value=6.2e-12 Score=122.96 Aligned_cols=180 Identities=19% Similarity=0.153 Sum_probs=148.9
Q ss_pred HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004848 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (727)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (727)
+.....++.+|..+...|++++|+..|++++...+.. .....+++.+|.+|...|++++|+..|+++++..+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--- 102 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS----PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN--- 102 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---
Confidence 4457789999999999999999999999998876543 223457889999999999999999999999986432
Q ss_pred CCchhHHHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHHHHHhcCCCCccHHH---H--------------HHHH
Q 004848 594 RKSAFFGVALNQMGLACVQR--------YSINEAVELFEEARSILEQECGPYHPDTLG---V--------------YSNL 648 (727)
Q Consensus 594 ~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~--------------~~~l 648 (727)
.+....+++.+|.++... |++++|+..|++++.. +|+... + ...+
T Consensus 103 --~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~a~~~~~~~~~~~~~~~~~~ 172 (235)
T TIGR03302 103 --HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--------YPNSEYAPDAKKRMDYLRNRLAGKELYV 172 (235)
T ss_pred --CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--------CCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 233445788899999876 7899999999999987 444322 1 2467
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 004848 649 AGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (727)
Q Consensus 649 a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (727)
|.+|...|++.+|+..|++++... +.+|....+++.+|.++...|++++|. .+++.+....|
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~-~~~~~l~~~~~ 234 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQ-DAAAVLGANYP 234 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCC
Confidence 889999999999999999999864 556788899999999999999999999 98888877655
No 96
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.46 E-value=7.3e-12 Score=124.98 Aligned_cols=229 Identities=17% Similarity=0.177 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004848 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (727)
Q Consensus 392 a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (727)
+..+...|.+|...+++++|...|.++.......++....+..+...+.+|... ++++|+.+|++++.++...+ ...
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G--~~~ 111 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG--RFS 111 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT---HH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC--cHH
Confidence 344566677888889999999999999998888888888888888888888666 99999999999999998876 245
Q ss_pred hHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004848 472 AVASVFVRLADMYNRT-GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (727)
Q Consensus 472 ~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (727)
..+.++..+|.+|... |++++|+.+|++|+.+++.. ........++..+|.++...|+|++|++.|++........
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e---~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~ 188 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE---GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN 188 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT---T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC---CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence 5678999999999999 99999999999999999873 3456678889999999999999999999999988764433
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHH
Q 004848 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--RYSINEAVELFEEARS 628 (727)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 628 (727)
..........+...+.+++..|++..|...+++.......... ......+..|-.++.. ...+++|+.-|....+
T Consensus 189 ~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~---s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 189 NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS---SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT---SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 2223344456677888999999999999888887654322221 2234566666666654 3457778777777665
Q ss_pred H
Q 004848 629 I 629 (727)
Q Consensus 629 ~ 629 (727)
+
T Consensus 266 l 266 (282)
T PF14938_consen 266 L 266 (282)
T ss_dssp -
T ss_pred c
Confidence 5
No 97
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.46 E-value=5.7e-09 Score=107.05 Aligned_cols=406 Identities=15% Similarity=0.117 Sum_probs=251.4
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhcc
Q 004848 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 299 (727)
.+..|+.....+..+|+ ...-...|.+||..++.. . ...+|-..-......|-.+-++..|++-+++.
T Consensus 101 mpRIwl~Ylq~l~~Q~~-iT~tR~tfdrALraLpvt----q---H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~---- 168 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGL-ITRTRRTFDRALRALPVT----Q---HDRIWDLYLKFVESHGLPETSIRVYRRYLKVA---- 168 (835)
T ss_pred CCHHHHHHHHHHHhcch-HHHHHHHHHHHHHhCchH----h---hccchHHHHHHHHhCCChHHHHHHHHHHHhcC----
Confidence 34466666777777876 777788888887765322 1 12223323333344455566666666666664
Q ss_pred CccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-------------------------------------Hh
Q 004848 300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ-------------------------------------VL 342 (727)
Q Consensus 300 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------------------------------------~~ 342 (727)
|.+. ......+...+++++|.+.|...+..-.- -.
T Consensus 169 -P~~~-------eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 169 -PEAR-------EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI 240 (835)
T ss_pred -HHHH-------HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence 2111 11223344555566665555544322100 00
Q ss_pred CCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCC--------------------------------HH
Q 004848 343 GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS--------------------------------LE 390 (727)
Q Consensus 343 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------------------------~~ 390 (727)
+.-.......|..||..|.+.|.|++|...|++++..--...+-.. ..
T Consensus 241 ~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~ 320 (835)
T KOG2047|consen 241 RRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLE 320 (835)
T ss_pred ccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHH
Confidence 1112345678899999999999999999999998754321111000 00
Q ss_pred HHH----HH---------------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc
Q 004848 391 EAA----DR---------------------RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL 445 (727)
Q Consensus 391 ~a~----~~---------------------~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 445 (727)
... .+ ..+-.+-...|+..+-+..|..|+...............|..+|.+|...
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhc
Confidence 000 00 00111222335566666777776654333333444567889999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC----CCCCChH-----hH
Q 004848 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP----VPGVPPE-----EI 516 (727)
Q Consensus 446 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~-----~~ 516 (727)
|+.+.|...|+++...-=. .-.+.+.+|..-|..-....+++.|+.+.+.|...-... +.+..+. ..
T Consensus 401 ~~l~~aRvifeka~~V~y~----~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS 476 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYK----TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS 476 (835)
T ss_pred CcHHHHHHHHHHhhcCCcc----chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh
Confidence 9999999999999876111 123457889999999999999999999999887653221 0111111 12
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004848 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596 (727)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 596 (727)
..+|..++.+....|-++.-...|++.+++.-.. ..+..+.|..+....-+++|.+.|++.+.+++-
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLriaT-------Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~------ 543 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT-------PQIIINYAMFLEEHKYFEESFKAYERGISLFKW------ 543 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC------
Confidence 4566677777777888888888888888775444 356678888888888999999999999887542
Q ss_pred hhHHHHHHH---HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHH-HHHHHHHHHHHcCChHHHHHHHHHHH
Q 004848 597 AFFGVALNQ---MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG-VYSNLAGTYDAIGRLDDAIEILEFVV 669 (727)
Q Consensus 597 ~~~~~~~~~---la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al 669 (727)
+..-.+|+. ....-+..-..+.|..+|++|++.+ .|..+. +|...|.+-..-|-...|+..|++|-
T Consensus 544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C-------pp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC-------PPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222333332 2222223347899999999999862 233333 55566777777788888888887763
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.46 E-value=3.2e-11 Score=117.91 Aligned_cols=195 Identities=14% Similarity=0.111 Sum_probs=150.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004848 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (727)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (727)
....+..++.+|..+...|++++|+..+++++... ++++....+++.+|.++...|++++|+..|+++++....
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~- 102 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN- 102 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-
Confidence 45567788999999999999999999999998872 224455578899999999999999999999999998432
Q ss_pred CCCCChHhHHHHHHHHHHHHHhc--------ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Q 004848 508 VPGVPPEEIASGLTDVSSIYESM--------NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD 579 (727)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 579 (727)
.+....+++.+|.++... |++++|+..|++++...+.... ...++..++..+.
T Consensus 103 -----~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~a~~~~~~~~~---------- 163 (235)
T TIGR03302 103 -----HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY----APDAKKRMDYLRN---------- 163 (235)
T ss_pred -----CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh----HHHHHHHHHHHHH----------
Confidence 444456788899999876 8899999999999988665411 1111111111110
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChH
Q 004848 580 SFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD 659 (727)
Q Consensus 580 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 659 (727)
. .......+|.++...|++.+|+..|++++.. .+++|....+++.+|.++...|+++
T Consensus 164 ----~--------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~a~~~l~~~~~~lg~~~ 220 (235)
T TIGR03302 164 ----R--------------LAGKELYVARFYLKRGAYVAAINRFETVVEN-----YPDTPATEEALARLVEAYLKLGLKD 220 (235)
T ss_pred ----H--------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----CCCCcchHHHHHHHHHHHHHcCCHH
Confidence 0 1123346788999999999999999999987 2335667889999999999999999
Q ss_pred HHHHHHHHHHH
Q 004848 660 DAIEILEFVVG 670 (727)
Q Consensus 660 ~A~~~~~~al~ 670 (727)
+|..+++....
T Consensus 221 ~A~~~~~~l~~ 231 (235)
T TIGR03302 221 LAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHh
Confidence 99998887654
No 99
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=9.1e-08 Score=95.25 Aligned_cols=464 Identities=13% Similarity=0.070 Sum_probs=300.6
Q ss_pred hHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH-HcCChhHHHHHHHHhcccch
Q 004848 220 LGPLLLKQARELISSG--DNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYC-SLGQYNEAIPVLEQSIEIPV 296 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g--~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~ 296 (727)
.+.+++.+|..+...| + ..++|++++..... ..+..-.+.+...+|.+++ ...+++.|...++++..+..
T Consensus 6 va~aLlGlAe~~rt~~PPk-Ikk~IkClqA~~~~------~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~ 78 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPK-IKKCIKCLQAIFQF------QISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISK 78 (629)
T ss_pred HHHHHHHHHHHHhhcCChh-HHHHHHHHHHHhcc------CChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHc
Confidence 4668889998888887 5 56666665544432 1222344667777887654 57899999999999988764
Q ss_pred hccCccchHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004848 297 IEEGQEHALAKFAGHMQLGDTYAMLG-QLENSLMCYTTGLEVQKQVLGETDP-RVGETCRYLAEAHVQALQFSEAQKFCQ 374 (727)
Q Consensus 297 ~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 374 (727)
..+. .-...+.+...|+.+|.... .+..|...+++++++.+. .| ......+.|+.++.-..++..|.+.+.
T Consensus 79 ~ip~--fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~-----~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 79 SIPS--FYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQS-----VPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred cccc--HHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC-----CchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 4333 22456777889999999887 889999999999999655 23 244567889999999999999998843
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHH----HHHHHHHH-HHHHcCC
Q 004848 375 MALDIHKDNGSPASLEEAADRRL--MGLICETKGDHEAALEHLVLASMTMIANDQDAEVA----SVDCSIGD-TYLSLSR 447 (727)
Q Consensus 375 ~al~~~~~~~~~~~~~~a~~~~~--l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~la~-~~~~~g~ 447 (727)
-... ..+........+++. ++.+.....+..+.......+-.+......++..- ..|..+-. .|...|+
T Consensus 152 vga~----sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq 227 (629)
T KOG2300|consen 152 VGAE----SADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQ 227 (629)
T ss_pred cccc----ccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 3222 222211222223333 34444555566666666666655554443333221 12223322 3455788
Q ss_pred HHHHHHHHHHHHHHHHHhc-----------CCCChhHH--------HHHHHHHHH--HHHcCChHHHHHHHHHHHHHHhc
Q 004848 448 YDEAGFAYQKALTAFKTNK-----------GENHPAVA--------SVFVRLADM--YNRTGKLRESKSYCENALRIYEK 506 (727)
Q Consensus 448 ~~~A~~~~~~al~~~~~~~-----------~~~~~~~~--------~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~ 506 (727)
...+...+++.-.....+. +.+.+... .++..+-.+ -...|-+++|.++-++++...++
T Consensus 228 ~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~ek 307 (629)
T KOG2300|consen 228 VRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEK 307 (629)
T ss_pred hhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 7777776665443332221 11122111 111111111 12457789999999999988766
Q ss_pred CCCCC-ChH----hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHHHHHHcCCHHHHH
Q 004848 507 PVPGV-PPE----EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ---STVAGIEAQMGVMYYMLGNYSDSY 578 (727)
Q Consensus 507 ~~~~~-~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~ 578 (727)
.-..+ ..+ .....+-.++.+-.-.|++.+|++....+.+.....++.. ...+.+.+.+|......+.++.|.
T Consensus 308 lkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe 387 (629)
T KOG2300|consen 308 LKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAE 387 (629)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHH
Confidence 42111 111 1123455667777889999999999999999988876532 234566777888888889999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC--Cc-----cHHHHHHHHHHH
Q 004848 579 DSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY--HP-----DTLGVYSNLAGT 651 (727)
Q Consensus 579 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~-----~~~~~~~~la~~ 651 (727)
..|..|.+.... ....+.+-.++|..|...|+-+.-. ++++.. ++. ++ ....+++..|..
T Consensus 388 ~hf~~a~k~t~~-----~dl~a~~nlnlAi~YL~~~~~ed~y----~~ld~i----~p~nt~s~ssq~l~a~~~~v~glf 454 (629)
T KOG2300|consen 388 FHFIEATKLTES-----IDLQAFCNLNLAISYLRIGDAEDLY----KALDLI----GPLNTNSLSSQRLEASILYVYGLF 454 (629)
T ss_pred HHHHHHHHhhhH-----HHHHHHHHHhHHHHHHHhccHHHHH----HHHHhc----CCCCCCcchHHHHHHHHHHHHHHH
Confidence 999999887543 2335677788999999987654322 233321 211 11 123467778888
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 652 YDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 652 ~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.+.++++.+|...+.+.+++... .+.+.-.+..+..|+.+..-.|+..++. +..+-++.+..+
T Consensus 455 af~qn~lnEaK~~l~e~Lkmana--ed~~rL~a~~LvLLs~v~lslgn~~es~-nmvrpamqlAkK 517 (629)
T KOG2300|consen 455 AFKQNDLNEAKRFLRETLKMANA--EDLNRLTACSLVLLSHVFLSLGNTVESR-NMVRPAMQLAKK 517 (629)
T ss_pred HHHhccHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHHHHhcchHHHH-hccchHHHHHhc
Confidence 89999999999999999988521 1223334556778899999999999999 888888777655
No 100
>PLN02789 farnesyltranstransferase
Probab=99.43 E-value=3.2e-11 Score=120.72 Aligned_cols=208 Identities=15% Similarity=0.033 Sum_probs=171.3
Q ss_pred HHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHhCCCCchHHHHH
Q 004848 275 YCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG-QLENSLMCYTTGLEVQKQVLGETDPRVGETC 353 (727)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 353 (727)
+...+++++|+..+.+++.+. +.+ ..+|...+.++..+| ++++++.++.+++.. +|....+|
T Consensus 47 l~~~e~serAL~lt~~aI~ln-----P~~----ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW 109 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN-----PGN----YTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIW 109 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC-----chh----HHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHh
Confidence 445678999999999999886 333 346889999999998 689999999999998 78899999
Q ss_pred HHHHHHHHHhcCH--HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH
Q 004848 354 RYLAEAHVQALQF--SEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV 431 (727)
Q Consensus 354 ~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 431 (727)
.+.+.++...|+. ++++.++.+++.+.+++. .+|...+.++...|+++++++++.+++.. ++..
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy--------~AW~~R~w~l~~l~~~~eeL~~~~~~I~~------d~~N 175 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSLDAKNY--------HAWSHRQWVLRTLGGWEDELEYCHQLLEE------DVRN 175 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHH------CCCc
Confidence 9999999888874 788999999999988764 67999999999999999999999999863 5666
Q ss_pred HHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHH
Q 004848 432 ASVDCSIGDTYLSL---SRY----DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENA 500 (727)
Q Consensus 432 ~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a 500 (727)
..+|+.++.++... |.+ ++++.+..+++.+ .|....+|..++.++.. .++..+|+..+.++
T Consensus 176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 78889999888766 333 4688888899888 79999999999999988 45567788888887
Q ss_pred HHHHhcCCCCCChHhHHHHHHHHHHHHHhc
Q 004848 501 LRIYEKPVPGVPPEEIASGLTDVSSIYESM 530 (727)
Q Consensus 501 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 530 (727)
+.. .+....++..|+.+|...
T Consensus 248 ~~~---------~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 248 LSK---------DSNHVFALSDLLDLLCEG 268 (320)
T ss_pred hcc---------cCCcHHHHHHHHHHHHhh
Confidence 664 333456788888888753
No 101
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.42 E-value=7.4e-09 Score=106.26 Aligned_cols=260 Identities=12% Similarity=0.100 Sum_probs=178.8
Q ss_pred CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 004848 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN 425 (727)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 425 (727)
+|.....|..... +..|+..+-+..|.+|+...........+ ...|..+|..|...|+.+.|...|+++... ..
T Consensus 345 n~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~--~~Lw~~faklYe~~~~l~~aRvifeka~~V--~y 418 (835)
T KOG2047|consen 345 NPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSP--GTLWVEFAKLYENNGDLDDARVIFEKATKV--PY 418 (835)
T ss_pred CCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCCh--hhHHHHHHHHHHhcCcHHHHHHHHHHhhcC--Cc
Confidence 5666666665544 45688888899999888743322222223 356889999999999999999999999742 12
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hcCCCChh------HHHHHHHHHHHHHHcCChHHHHH
Q 004848 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT----NKGENHPA------VASVFVRLADMYNRTGKLRESKS 495 (727)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~ 495 (727)
+...+.+.+|+..|..-....+++.|+.+.++|...-.. .++...|. ...+|..++.+....|-++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 234567889999999999999999999999988764211 11111222 34567777888888899999999
Q ss_pred HHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHH
Q 004848 496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS 575 (727)
Q Consensus 496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 575 (727)
.|++.+.+- -..+.+..+.|..+....-+++|.+.|++.+.+++-. ....+-..|......-+..-..+
T Consensus 499 vYdriidLr---------iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p--~v~diW~tYLtkfi~rygg~klE 567 (835)
T KOG2047|consen 499 VYDRIIDLR---------IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP--NVYDIWNTYLTKFIKRYGGTKLE 567 (835)
T ss_pred HHHHHHHHh---------cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc--cHHHHHHHHHHHHHHHhcCCCHH
Confidence 999998883 2235567788889988899999999999998886422 11122222222233333344789
Q ss_pred HHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004848 576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (727)
Q Consensus 576 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (727)
.|..+|++|++.++ +...-.+|...+.+-...|-...|+..|++|-.
T Consensus 568 raRdLFEqaL~~Cp------p~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 568 RARDLFEQALDGCP------PEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999998542 222334555556666677777777777777643
No 102
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.40 E-value=2.8e-11 Score=120.86 Aligned_cols=231 Identities=17% Similarity=0.175 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCC
Q 004848 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ 553 (727)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 553 (727)
+..+...|.+|...+++++|..+|.++.....+. .+....+..+...+.+|... ++++|+.+|++|+.++... |.
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~---~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~-G~ 109 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL---GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA-GR 109 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT---T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC-T-
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc-Cc
Confidence 3445555677788899999999999999988773 34556677888888887766 9999999999999999887 87
Q ss_pred CccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848 554 QSTVAGIEAQMGVMYYML-GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (727)
Q Consensus 554 ~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (727)
....+.++..+|.+|... |++++|+.+|++|++++...+ .+.....++..+|.++...|+|++|++.|++.......
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 788889999999999999 999999999999999998866 33456788999999999999999999999998775322
Q ss_pred hcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--hCChhHHHHHHHHH
Q 004848 633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE--AGRVRSRKAQSLET 710 (727)
Q Consensus 633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~--~g~~~~A~~~~l~~ 710 (727)
.... .......++..+.|+...|++..|...+++....... -.+..-......|-..+.. ...+.+|+ ..|..
T Consensus 188 ~~l~-~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~---F~~s~E~~~~~~l~~A~~~~D~e~f~~av-~~~d~ 262 (282)
T PF14938_consen 188 NNLL-KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS---FASSREYKFLEDLLEAYEEGDVEAFTEAV-AEYDS 262 (282)
T ss_dssp HCTT-GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT---STTSHHHHHHHHHHHHHHTT-CCCHHHHC-HHHTT
T ss_pred cccc-chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CCCcHHHHHHHHHHHHHHhCCHHHHHHHH-HHHcc
Confidence 1110 1233346678888999999999999999988754211 1122334445555555542 34566666 66666
Q ss_pred HHHHhh
Q 004848 711 LLDANS 716 (727)
Q Consensus 711 al~~~p 716 (727)
.-.+|+
T Consensus 263 ~~~ld~ 268 (282)
T PF14938_consen 263 ISRLDN 268 (282)
T ss_dssp SS---H
T ss_pred cCccHH
Confidence 655554
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=2.2e-09 Score=99.88 Aligned_cols=226 Identities=17% Similarity=0.176 Sum_probs=171.6
Q ss_pred HHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Q 004848 275 YCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCR 354 (727)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 354 (727)
+.+..+|..|++++..-.+.. +. ....+..||.||+...+|..|..+|++.-.+ .|......+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~-----p~----~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrl 82 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERS-----PR----SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRL 82 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-----cc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHH
Confidence 367788999999988766653 11 2335888999999999999999999998887 688888899
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 004848 355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASV 434 (727)
Q Consensus 355 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 434 (727)
..+..+++.+.+..|+.......+.. . ....++..-+.+.+..+++..+..+.++. .....+..
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~~-~-------L~~~~lqLqaAIkYse~Dl~g~rsLveQl--------p~en~Ad~ 146 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDNP-A-------LHSRVLQLQAAIKYSEGDLPGSRSLVEQL--------PSENEADG 146 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCCH-H-------HHHHHHHHHHHHhcccccCcchHHHHHhc--------cCCCccch
Confidence 99999999999999998877665421 1 11244566677777888888887776543 12345667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCC-----
Q 004848 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP----- 509 (727)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----- 509 (727)
..+.|.+.++.|+++.|++-|+.+++. .-.....-++++.++++.++++.|+++..+.++..-+..|
T Consensus 147 ~in~gCllykegqyEaAvqkFqaAlqv--------sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIG 218 (459)
T KOG4340|consen 147 QINLGCLLYKEGQYEAAVQKFQAALQV--------SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIG 218 (459)
T ss_pred hccchheeeccccHHHHHHHHHHHHhh--------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCcc
Confidence 788999999999999999999999987 3444566788999999999999999999888775433211
Q ss_pred ----CC-----------ChHhHHHHHHHHHHHHHhcccHHHHHHHHH
Q 004848 510 ----GV-----------PPEEIASGLTDVSSIYESMNELEQAIKLLQ 541 (727)
Q Consensus 510 ----~~-----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (727)
+. .......+++..+.++++.|+++.|.+.+.
T Consensus 219 m~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 219 MTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred ceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 00 012245667778889999999998877654
No 104
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.37 E-value=1.4e-08 Score=99.17 Aligned_cols=305 Identities=14% Similarity=0.099 Sum_probs=214.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh
Q 004848 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE 430 (727)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (727)
.....-|..-+..|+|.+|++...++-+..+.. ..++..-+.....+|+++.+-.++.++-+. ....
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p--------~l~~l~aA~AA~qrgd~~~an~yL~eaae~-----~~~~ 151 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP--------VLAYLLAAEAAQQRGDEDRANRYLAEAAEL-----AGDD 151 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch--------HHHHHHHHHHHHhcccHHHHHHHHHHHhcc-----CCCc
Confidence 444555666777899999999988855443222 345777788889999999999999887532 1223
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCC
Q 004848 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (727)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (727)
...+...++.+....|+++.|..-..++++. .|....++.....+|...|++.....++.+.-+. +
T Consensus 152 ~l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka------~ 217 (400)
T COG3071 152 TLAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA------G 217 (400)
T ss_pred hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc------c
Confidence 3456678899999999999999999999998 7888899999999999999999998888776544 1
Q ss_pred CChHhHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848 511 VPPEEIASGLTDVSSI--YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (727)
Q Consensus 511 ~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (727)
--+.....-+-+.+.. +...++-..+.. +....+-.+...... ..+...++.-+...|++++|.+...++++..
T Consensus 218 ~l~~~e~~~le~~a~~glL~q~~~~~~~~g-L~~~W~~~pr~lr~~---p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~ 293 (400)
T COG3071 218 LLSDEEAARLEQQAWEGLLQQARDDNGSEG-LKTWWKNQPRKLRND---PELVVAYAERLIRLGDHDEAQEIIEDALKRQ 293 (400)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHhccHHhhcC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 1122222222222221 122222222222 122222222211111 2445567888999999999999999998752
Q ss_pred HHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004848 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV 668 (727)
Q Consensus 589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 668 (727)
. ++ .....++ ...-+++..=++..++.++. +|+....+..||.+|.+.+.|.+|..+|+.+
T Consensus 294 ~------D~---~L~~~~~--~l~~~d~~~l~k~~e~~l~~--------h~~~p~L~~tLG~L~~k~~~w~kA~~~leaA 354 (400)
T COG3071 294 W------DP---RLCRLIP--RLRPGDPEPLIKAAEKWLKQ--------HPEDPLLLSTLGRLALKNKLWGKASEALEAA 354 (400)
T ss_pred c------Ch---hHHHHHh--hcCCCCchHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1 11 1111122 33566777777778888777 8888899999999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 004848 669 VGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (727)
Q Consensus 669 l~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (727)
+... .....+..+|.++.++|+..+|. +.+++++.+.
T Consensus 355 l~~~---------~s~~~~~~la~~~~~~g~~~~A~-~~r~e~L~~~ 391 (400)
T COG3071 355 LKLR---------PSASDYAELADALDQLGEPEEAE-QVRREALLLT 391 (400)
T ss_pred HhcC---------CChhhHHHHHHHHHHcCChHHHH-HHHHHHHHHh
Confidence 9752 33567888999999999999999 9999998554
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=9.5e-08 Score=100.63 Aligned_cols=431 Identities=16% Similarity=0.109 Sum_probs=236.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH---hCCCC
Q 004848 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV---LGETD 346 (727)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~ 346 (727)
.|-..|...|.|++|.++.+.-=.+. .-.+|++.|..+...++.+.|+++|+++-.....+ +.++.
T Consensus 831 LlNKlyQs~g~w~eA~eiAE~~DRiH-----------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p 899 (1416)
T KOG3617|consen 831 LLNKLYQSQGMWSEAFEIAETKDRIH-----------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYP 899 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHhhcccee-----------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhCh
Confidence 35566777888888887766433221 12358899999999999999999999863222111 11111
Q ss_pred ---------chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC-------------CCHHHHHHHHHHHHHHHH
Q 004848 347 ---------PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP-------------ASLEEAADRRLMGLICET 404 (727)
Q Consensus 347 ---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------~~~~~a~~~~~l~~~~~~ 404 (727)
......|..+|..+...|+.+.|+.+|..|-+.+....-. .....-.+.+.+|..|..
T Consensus 900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn 979 (1416)
T KOG3617|consen 900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEN 979 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhh
Confidence 1123467788999999999999999998886654321100 000012467889999999
Q ss_pred cCCHHHHHHHHHHH------HHHHHhCCCChhHHHH--------HHHHHHHHHHcC-CHHHHHHHHHHH------HHH--
Q 004848 405 KGDHEAALEHLVLA------SMTMIANDQDAEVASV--------DCSIGDTYLSLS-RYDEAGFAYQKA------LTA-- 461 (727)
Q Consensus 405 ~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~--------~~~la~~~~~~g-~~~~A~~~~~~a------l~~-- 461 (727)
.|++.+|+.+|.+| +++.+.++-....... ....|..|...| .++.|..+|.+| +++
T Consensus 980 ~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF 1059 (1416)
T KOG3617|consen 980 DGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAF 1059 (1416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHH
Confidence 99999999999877 3444444332222211 122345555555 666666666543 222
Q ss_pred ----------HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHH------HHHHHHHhcCC------------CC---
Q 004848 462 ----------FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC------ENALRIYEKPV------------PG--- 510 (727)
Q Consensus 462 ----------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~------------~~--- 510 (727)
..+-. +....+..+..-+..+....+|++|..++ +.|+.++.... +.
T Consensus 1060 ~tqQf~aL~lIa~DL--d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~ 1137 (1416)
T KOG3617|consen 1060 RTQQFSALDLIAKDL--DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDD 1137 (1416)
T ss_pred hhcccHHHHHHHHhc--CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCC
Confidence 22212 12233456667788888889999998765 44555443321 11
Q ss_pred -CChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC-----CCCCc---------cHHHHHHHHHHHHHHcCCHH
Q 004848 511 -VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA-----PGQQS---------TVAGIEAQMGVMYYMLGNYS 575 (727)
Q Consensus 511 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~---------~~~~~~~~la~~~~~~g~~~ 575 (727)
.+......++..+|.++.++|.|..|-+-|.+|-...... .|+.. ..-.+ +.++.-|++.-+|.
T Consensus 1138 ~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEi-YImAANyLQtlDWq 1216 (1416)
T KOG3617|consen 1138 MPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEI-YIMAANYLQTLDWQ 1216 (1416)
T ss_pred CccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeecccccee-eeehhhhhhhcccc
Confidence 1223456788999999999999999988887764332211 01111 00111 12333344444444
Q ss_pred HHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHhcCCCCccHH--HHHHHHHHHH
Q 004848 576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV-QRYSINEAVELFEEARSILEQECGPYHPDTL--GVYSNLAGTY 652 (727)
Q Consensus 576 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~ 652 (727)
.--+..+..+..+.+-.. -...+..|...|.+-. ...+|++|...+++|.+-..+....++.... .....++.+-
T Consensus 1217 ~~pq~mK~I~tFYTKgqa--fd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk 1294 (1416)
T KOG3617|consen 1217 DNPQTMKDIETFYTKGQA--FDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVK 1294 (1416)
T ss_pred cChHHHhhhHhhhhcchh--HHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 333333333333221000 0111222222222221 2345666666666665544443322221111 1111222211
Q ss_pred HH----cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 653 DA----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 653 ~~----~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.. +--.+++..-..++-.+.++-.-++.-.....+..|.+-|....+|..|. ..++.+-...|.
T Consensus 1295 ~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~Ay-Ral~el~~k~p~ 1362 (1416)
T KOG3617|consen 1295 VQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAY-RALTELQKKVPN 1362 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHH-HHHHHHhhcCCc
Confidence 11 11112333444444444333222222234567778888899999999999 999998888887
No 106
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=4.3e-09 Score=102.66 Aligned_cols=302 Identities=17% Similarity=0.077 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCcc
Q 004848 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE 302 (727)
Q Consensus 223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 302 (727)
.....|..-+..|+ |.+|.....++-+. .+ .-..+|..-+.+...+|+++.|-.++.++.+.. .+
T Consensus 86 ~~~~egl~~l~eG~-~~qAEkl~~rnae~-------~e--~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-----~~ 150 (400)
T COG3071 86 KALNEGLLKLFEGD-FQQAEKLLRRNAEH-------GE--QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-----GD 150 (400)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHhhhc-------Cc--chHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----CC
Confidence 44555666677786 77777777665432 22 235567777888899999999999999998873 11
Q ss_pred chHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004848 303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (727)
Q Consensus 303 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (727)
. ...+....+.+....|+++.|..-..++++. .|....++.....+|...|++.....++.+.-+..--
T Consensus 151 ~---~l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l 219 (400)
T COG3071 151 D---TLAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLL 219 (400)
T ss_pred c---hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCC
Confidence 1 2345888999999999999999999999998 6888899999999999999999998887765443211
Q ss_pred cCCCCCHHHHHHHHHHHHH--HHHcCCHHHHHH---HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004848 383 NGSPASLEEAADRRLMGLI--CETKGDHEAALE---HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457 (727)
Q Consensus 383 ~~~~~~~~~a~~~~~l~~~--~~~~g~~~~A~~---~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 457 (727)
... ...-+...+.. +....+-..+.. +++.. -.....+| .+...++.-+..+|++++|.+...+
T Consensus 220 ----~~~-e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~---pr~lr~~p---~l~~~~a~~li~l~~~~~A~~~i~~ 288 (400)
T COG3071 220 ----SDE-EAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ---PRKLRNDP---ELVVAYAERLIRLGDHDEAQEIIED 288 (400)
T ss_pred ----ChH-HHHHHHHHHHHHHHHHHhccccchHHHHHHHhc---cHHhhcCh---hHHHHHHHHHHHcCChHHHHHHHHH
Confidence 111 11112222211 112222222222 22211 11112233 3445567888999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHH
Q 004848 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI 537 (727)
Q Consensus 458 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (727)
+++.. -++. ....++ ...-+++..=++..++.++. ++..+..+..||.++.+.+.|.+|.
T Consensus 289 ~Lk~~------~D~~---L~~~~~--~l~~~d~~~l~k~~e~~l~~---------h~~~p~L~~tLG~L~~k~~~w~kA~ 348 (400)
T COG3071 289 ALKRQ------WDPR---LCRLIP--RLRPGDPEPLIKAAEKWLKQ---------HPEDPLLLSTLGRLALKNKLWGKAS 348 (400)
T ss_pred HHHhc------cChh---HHHHHh--hcCCCCchHHHHHHHHHHHh---------CCCChhHHHHHHHHHHHhhHHHHHH
Confidence 98761 1222 111111 23457777777778887777 3334578999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848 538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (727)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (727)
.+|+.+++..+.. ..+..+|.++.++|+..+|..++++++....
T Consensus 349 ~~leaAl~~~~s~--------~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 349 EALEAALKLRPSA--------SDYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHHHhcCCCh--------hhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 9999998875543 5678899999999999999999999985543
No 107
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=1.9e-09 Score=100.39 Aligned_cols=394 Identities=12% Similarity=-0.024 Sum_probs=237.4
Q ss_pred ccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 004848 198 KKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS 277 (727)
Q Consensus 198 ~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 277 (727)
....+|..+|+........+|.....+-.+|.+|+...+ |..|-++|++.-..+ |.........+..+++
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~-f~~AA~CYeQL~ql~---------P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE-FALAAECYEQLGQLH---------PELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhC---------hHHHHHHHHHHHHHHH
Confidence 444556667766666677788888888888888888887 888888888876654 4445555566788888
Q ss_pred cCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 004848 278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357 (727)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 357 (727)
.+.+..|+.......... ...-.++..-+-+.+..+++..+....++.- ....+....+.|
T Consensus 91 A~i~ADALrV~~~~~D~~---------~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp----------~en~Ad~~in~g 151 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNP---------ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP----------SENEADGQINLG 151 (459)
T ss_pred hcccHHHHHHHHHhcCCH---------HHHHHHHHHHHHHhcccccCcchHHHHHhcc----------CCCccchhccch
Confidence 888888888777655421 1122234444555566666666555444311 124567778888
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-C----------
Q 004848 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN-D---------- 426 (727)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~---------- 426 (727)
.+.++.|+++.|++-|+.+++...-.. ..-++++.+++..++++.|+++....+..-... +
T Consensus 152 CllykegqyEaAvqkFqaAlqvsGyqp--------llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg 223 (459)
T KOG4340|consen 152 CLLYKEGQYEAAVQKFQAALQVSGYQP--------LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG 223 (459)
T ss_pred heeeccccHHHHHHHHHHHHhhcCCCc--------hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc
Confidence 888899999999999998888764332 236778888999999999998887665322110 0
Q ss_pred -------C-----ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 004848 427 -------Q-----DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK 494 (727)
Q Consensus 427 -------~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 494 (727)
+ ......+++..+.++++.++++.|.+.+...--..+ +...+.++.+++..-. .+++.+..
T Consensus 224 iDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE------~elDPvTLHN~Al~n~-~~~p~~g~ 296 (459)
T KOG4340|consen 224 IDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAE------EELDPVTLHNQALMNM-DARPTEGF 296 (459)
T ss_pred CchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCccc------ccCCchhhhHHHHhcc-cCCccccH
Confidence 0 012345566677788888888888776543221111 2223456666665433 35566665
Q ss_pred HHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHH-HHcC
Q 004848 495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMY-YMLG 572 (727)
Q Consensus 495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~-~~~g 572 (727)
.-+.-.+.+ .|.-...+.++-.+|++..-|+-|...+- ..+.... .+...++.+-..+ ..+-
T Consensus 297 ~KLqFLL~~---------nPfP~ETFANlLllyCKNeyf~lAADvLA-------En~~lTyk~L~~Yly~LLdaLIt~qT 360 (459)
T KOG4340|consen 297 EKLQFLLQQ---------NPFPPETFANLLLLYCKNEYFDLAADVLA-------ENAHLTYKFLTPYLYDLLDALITCQT 360 (459)
T ss_pred HHHHHHHhc---------CCCChHHHHHHHHHHhhhHHHhHHHHHHh-------hCcchhHHHhhHHHHHHHHHHHhCCC
Confidence 555555555 11223455666677777665555544433 2211111 1122223333222 3345
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHH-HHHHHH-----hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHH
Q 004848 573 NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM-GLACVQ-----RYSINEAVELFEEARSILEQECGPYHPDTLGVYS 646 (727)
Q Consensus 573 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-a~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 646 (727)
..++|.+-+......+.. -+..+ +.+... ......|++-|++++++ ...++.
T Consensus 361 ~pEea~KKL~~La~~l~~-----------kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~-----------YLPVlM 418 (459)
T KOG4340|consen 361 APEEAFKKLDGLAGMLTE-----------KLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK-----------YLPVLM 418 (459)
T ss_pred CHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------HHHHHH
Confidence 666666655544332111 11111 111111 11234566677777766 233677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004848 647 NLAGTYDAIGRLDDAIEILEFVVGIRE 673 (727)
Q Consensus 647 ~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (727)
..|++|+...+|..+...|+..++.+.
T Consensus 419 a~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 419 AQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred HHHHhhccccccHHHHHHHHHHHhhhc
Confidence 889999999999999999999998763
No 108
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=99.32 E-value=2.1e-06 Score=95.56 Aligned_cols=477 Identities=13% Similarity=0.039 Sum_probs=294.0
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004848 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (727)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (727)
..+.+.+.+|..++..-+|++.|..++.+++.+.++. .- ......+...++.++.+.+... |...++++++....
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~--~~-~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~- 131 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERH--RL-TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET- 131 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc--ch-HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-
Confidence 3577889999999988788999999999999987551 11 1223556667899999888887 99999999987632
Q ss_pred cCccchHHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004848 299 EGQEHALAKFAGHMQL-GDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP-RVGETCRYLAEAHVQALQFSEAQKFCQMA 376 (727)
Q Consensus 299 ~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 376 (727)
..+... ..++..+ ...+...+++..|+..++......... .++ -...+....+.++...+..+++++.++++
T Consensus 132 --~~~~~w-~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~---~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 132 --YGHSAW-YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR---GDPAVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred --cCchhH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 111111 1112222 233333379999999999999886531 122 23334455567777788889999999998
Q ss_pred HHHHHhc--CCCCCHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHhCCCCh-----------------------
Q 004848 377 LDIHKDN--GSPASLEEAADRRLMGL--ICETKGDHEAALEHLVLASMTMIANDQDA----------------------- 429 (727)
Q Consensus 377 l~~~~~~--~~~~~~~~a~~~~~l~~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------- 429 (727)
....... .+........++..+-. ++...|++..+...+.+.-..+......+
T Consensus 206 ~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~ 285 (608)
T PF10345_consen 206 IAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSG 285 (608)
T ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCC
Confidence 7766543 11123333344444443 45567887787777665543333221111
Q ss_pred -------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---CCCh---------------hHHHHHH
Q 004848 430 -------------EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG---ENHP---------------AVASVFV 478 (727)
Q Consensus 430 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~---------------~~~~~~~ 478 (727)
..+-+|..-|......+..++|.+++.+++...++... ...+ ....++.
T Consensus 286 ~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~ 365 (608)
T PF10345_consen 286 GTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLF 365 (608)
T ss_pred CceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHH
Confidence 12233444566677778888999999999999887661 1100 1223455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCC----CC
Q 004848 479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG----QQ 554 (727)
Q Consensus 479 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~ 554 (727)
.++.+.+-.+++..|...+..+.....+............+++..|..+...|+.+.|+.+|.+..-....... ..
T Consensus 366 y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~ 445 (608)
T PF10345_consen 366 YQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFR 445 (608)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcch
Confidence 66777888999999999999988886653211123345777888999999999999999999855533322111 11
Q ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHH-
Q 004848 555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK-SAFFGVALNQMGLACV--QRYSINEAVELFEEARSIL- 630 (727)
Q Consensus 555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~- 630 (727)
.....+..++..++...+.-......+.+.++......... ......++..+-..+. ..-...++..++.++++.+
T Consensus 446 El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~ 525 (608)
T PF10345_consen 446 ELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMAN 525 (608)
T ss_pred HHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHH
Confidence 22233445667777766654432222333333222221111 1222222222222221 2223458999999999988
Q ss_pred HHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHH---HHHHHHHHHHHhCChhHHHHHH
Q 004848 631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDD---EKRRLAELLKEAGRVRSRKAQS 707 (727)
Q Consensus 631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~---~~~~La~~~~~~g~~~~A~~~~ 707 (727)
..... ..-...++..++..+. .|+..+.......+..+..+. ++...... +-..++..+...|+.++|. ..
T Consensus 526 ~~~~n--~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~--~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~-~~ 599 (608)
T PF10345_consen 526 NKLGN--SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS--SDYSDQLWHLVASGMLADSYEVQGDRDKAE-EA 599 (608)
T ss_pred Hhhcc--chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHHcCcHHHHH-HH
Confidence 44322 2333345666666666 899999888888888776554 11122222 3336677789999999998 66
Q ss_pred HHHHH
Q 004848 708 LETLL 712 (727)
Q Consensus 708 l~~al 712 (727)
..+.-
T Consensus 600 ~~~~~ 604 (608)
T PF10345_consen 600 RQQLD 604 (608)
T ss_pred HHHHH
Confidence 65543
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.29 E-value=4.3e-10 Score=124.32 Aligned_cols=260 Identities=13% Similarity=0.102 Sum_probs=182.8
Q ss_pred CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI 423 (727)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 423 (727)
.-+|....++..|...+...+++++|+..++.+++..|... ..++.+|.++...+++.++...
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i--------~~yy~~G~l~~q~~~~~~~~lv--------- 87 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI--------SALYISGILSLSRRPLNDSNLL--------- 87 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce--------ehHHHHHHHHHhhcchhhhhhh---------
Confidence 33688999999999999999999999999999999887764 4588999999999987666543
Q ss_pred hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (727)
Q Consensus 424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (727)
.++.......++ .++.++...+.. .+..-.+++.||.||.++|++++|...|++++++
T Consensus 88 -------------~~l~~~~~~~~~-~~ve~~~~~i~~--------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~ 145 (906)
T PRK14720 88 -------------NLIDSFSQNLKW-AIVEHICDKILL--------YGENKLALRTLAEAYAKLNENKKLKGVWERLVKA 145 (906)
T ss_pred -------------hhhhhcccccch-hHHHHHHHHHHh--------hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 233344444455 444444443332 3555668899999999999999999999999988
Q ss_pred HhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004848 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583 (727)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 583 (727)
++..+.+++++|..|... +.++|+.++.+|+..+-+. ........+|.. .+.....+++.=..+.++
T Consensus 146 ---------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~-kq~~~~~e~W~k--~~~~~~~d~d~f~~i~~k 212 (906)
T PRK14720 146 ---------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKK-KQYVGIEEIWSK--LVHYNSDDFDFFLRIERK 212 (906)
T ss_pred ---------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhh-hcchHHHHHHHH--HHhcCcccchHHHHHHHH
Confidence 455678899999999888 9999999999988875443 111222222221 122222233322222222
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHH
Q 004848 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663 (727)
Q Consensus 584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 663 (727)
.+.. .+ .......+.-+=..|...++|++++.+++.++++ .|....+...|+.||. +.|.. ..
T Consensus 213 i~~~---~~---~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~kY~~-~~ 275 (906)
T PRK14720 213 VLGH---RE---FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK--EKYKD-HS 275 (906)
T ss_pred HHhh---hc---cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HHccC-cc
Confidence 2221 11 1123456666778899999999999999999999 8888889999999998 55555 66
Q ss_pred HHHHHHHHH
Q 004848 664 ILEFVVGIR 672 (727)
Q Consensus 664 ~~~~al~~~ 672 (727)
.++.++++.
T Consensus 276 ~~ee~l~~s 284 (906)
T PRK14720 276 LLEDYLKMS 284 (906)
T ss_pred hHHHHHHHh
Confidence 777777653
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.27 E-value=8.6e-11 Score=103.98 Aligned_cols=127 Identities=10% Similarity=0.037 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCH
Q 004848 537 IKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI 616 (727)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 616 (727)
..+|++++++.+.. +..+|.++...|++++|+.+|++++.+ .+....++..+|.++...|++
T Consensus 13 ~~~~~~al~~~p~~----------~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 13 EDILKQLLSVDPET----------VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHHHcCHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhH
Confidence 45678888776542 456899999999999999999999876 334578999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004848 617 NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE 696 (727)
Q Consensus 617 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~ 696 (727)
++|+..|++++.+ +|....+++++|.++..+|++++|+..|++++.+ .|+.+..+..++.+...
T Consensus 75 ~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--------~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 75 TTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--------SYADASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHH
Confidence 9999999999998 8999999999999999999999999999999987 57777777777776554
Q ss_pred h
Q 004848 697 A 697 (727)
Q Consensus 697 ~ 697 (727)
.
T Consensus 139 l 139 (144)
T PRK15359 139 V 139 (144)
T ss_pred H
Confidence 3
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.24 E-value=1e-10 Score=103.45 Aligned_cols=112 Identities=18% Similarity=0.136 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 004848 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (727)
Q Consensus 578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 657 (727)
..+|++++++- + ..+..+|.++...|++++|+.+|++++.+ +|....++..+|.++...|+
T Consensus 13 ~~~~~~al~~~--------p---~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSVD--------P---ETVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHcC--------H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 45677777752 2 12557899999999999999999999998 89999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 658 ~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+++|+..|++++.+ +|....+++++|.++...|++++|+ ..|++++.++|+
T Consensus 74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi-~~~~~Al~~~p~ 124 (144)
T PRK15359 74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAR-EAFQTAIKMSYA 124 (144)
T ss_pred HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence 99999999999986 6888999999999999999999999 999999999997
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.22 E-value=8.8e-10 Score=103.07 Aligned_cols=122 Identities=13% Similarity=0.134 Sum_probs=106.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004848 571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG 650 (727)
Q Consensus 571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 650 (727)
.++.++++..+++++.. .+.....|..+|.+|...|++++|+..|++++.+ .|+...++..+|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 56678888888888875 2334678999999999999999999999999999 8888999999999
Q ss_pred HH-HHcCC--hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 651 TY-DAIGR--LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 651 ~~-~~~g~--~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
++ ...|+ +++|...++++++. +|....++..||..+...|++++|+ .+++++++++|.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai-~~~~~aL~l~~~ 176 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAI-ELWQKVLDLNSP 176 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence 74 67787 59999999999987 7888899999999999999999999 999999999887
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.21 E-value=1e-09 Score=120.86 Aligned_cols=158 Identities=14% Similarity=0.091 Sum_probs=117.8
Q ss_pred ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q 004848 531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC 610 (727)
Q Consensus 531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 610 (727)
+....+...+-+++.+..+.+ ....++..||.+....|.+++|..+++.++++. +....++..++.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--------Pd~~~a~~~~a~~L 130 (694)
T PRK15179 63 AAVHKPAAALPELLDYVRRYP----HTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--------PDSSEAFILMLRGV 130 (694)
T ss_pred hhhcchHhhHHHHHHHHHhcc----ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--------CCcHHHHHHHHHHH
Confidence 333344444444555444432 125677788888888888888888888888762 33567778888888
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004848 611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL 690 (727)
Q Consensus 611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~L 690 (727)
.+.+++++|+..+++++.. .|+...+++.+|.++.++|++++|+.+|++++.- +|+...++..+
T Consensus 131 ~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~~~~ 194 (694)
T PRK15179 131 KRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGYVGW 194 (694)
T ss_pred HHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHHHHH
Confidence 8888888888888888887 7888888888888888888888888888888852 67778888888
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 691 AELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 691 a~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
|.++...|+.++|. ..|+++++....
T Consensus 195 a~~l~~~G~~~~A~-~~~~~a~~~~~~ 220 (694)
T PRK15179 195 AQSLTRRGALWRAR-DVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHcCCHHHHH-HHHHHHHHhhCc
Confidence 88888888888888 888888776554
No 114
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=99.21 E-value=7.2e-06 Score=91.39 Aligned_cols=442 Identities=14% Similarity=0.088 Sum_probs=276.6
Q ss_pred HHHHHHHHHHHHHHH-HcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848 262 LELVMCLHVIAAIYC-SLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340 (727)
Q Consensus 262 ~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 340 (727)
...+.+...+|.+++ ...+++.|..++++++.+... .......+.+.+.++.++.+.+... |...++++++....
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~---~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCER---HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 445788899999988 789999999999999988644 3333345667788899999998888 99999999998755
Q ss_pred HhCCCCchHHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004848 341 VLGETDPRVGETCRYL-AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLAS 419 (727)
Q Consensus 341 ~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al 419 (727)
. .+.....++..+ ...+...+++..|++.++.........+++ .....+....+.+....+..+++++...++.
T Consensus 132 ~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~--~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 132 Y---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP--AVFVLASLSEALLHLRRGSPDDVLELLQRAI 206 (608)
T ss_pred c---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH--HHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 1 112222333333 333333479999999999999988755543 3334555666778888898999999998886
Q ss_pred HHHHhC----CCChhHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHhcCCC-------C----------------
Q 004848 420 MTMIAN----DQDAEVASVDCSIGD--TYLSLSRYDEAGFAYQKALTAFKTNKGEN-------H---------------- 470 (727)
Q Consensus 420 ~~~~~~----~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~---------------- 470 (727)
...... ...+....++..+-. ++...|++..+...+++.-.......... +
T Consensus 207 ~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~ 286 (608)
T PF10345_consen 207 AQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGG 286 (608)
T ss_pred HHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCC
Confidence 655533 113333344444433 45667888888777666655544432210 0
Q ss_pred -h----------hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC-C--CCChH--------------hHHHHHHH
Q 004848 471 -P----------AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV-P--GVPPE--------------EIASGLTD 522 (727)
Q Consensus 471 -~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~--~~~~~--------------~~~~~~~~ 522 (727)
+ ..+.+|..-|......+..++|.++++++++..++.. . ..... ....++..
T Consensus 287 ~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y 366 (608)
T PF10345_consen 287 TPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFY 366 (608)
T ss_pred ceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHH
Confidence 0 1223444446666777888899999999999887754 1 00000 01234455
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhCCCC--CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---CCCCch
Q 004848 523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQ--QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI---GERKSA 597 (727)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~ 597 (727)
++.+..-.+++..|...+..+.......+.. ......+++..|..+...|+.+.|..+|.+..-..... ......
T Consensus 367 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E 446 (608)
T PF10345_consen 367 QIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE 446 (608)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence 6777778899999999999988887655332 22345678888999999999999999998555333222 122233
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC-CCCccHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHH-H
Q 004848 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG-PYHPDTLGVYSNLAGTYDA--IGRLDDAIEILEFVVGIR-E 673 (727)
Q Consensus 598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~-~ 673 (727)
....+..++..++...+.-.....-+...++....... ..+.....++..+-.++.. .-...++...+..+++.. .
T Consensus 447 l~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~ 526 (608)
T PF10345_consen 447 LYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANN 526 (608)
T ss_pred HHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHH
Confidence 44555666777776655433322223333332222111 1122333333333333322 224458999999999887 3
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 004848 674 EKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (727)
Q Consensus 674 ~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (727)
.. + ..--..-++..++..++ .|+..+.. .....++....
T Consensus 527 ~~-~-n~~l~~~~L~lm~~~lf-~~~~~e~~-~~s~~a~~~A~ 565 (608)
T PF10345_consen 527 KL-G-NSQLLAILLNLMGHRLF-EGDVGEQA-KKSARAFQLAK 565 (608)
T ss_pred hh-c-cchHHHHHHHHHHHHHH-cCCHHHHH-HHHHHHHHHHH
Confidence 22 2 22333445566666666 78888877 66666665443
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.21 E-value=2.2e-09 Score=118.93 Aligned_cols=236 Identities=13% Similarity=0.030 Sum_probs=172.6
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 004848 213 AGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI 292 (727)
Q Consensus 213 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 292 (727)
+..-.|....++..++..+...++ +++|+..++.+++.. |.....++.+|.++++.+++.+|... .++
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~-~deai~i~~~~l~~~---------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l 90 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENL-TDEAKDICEEHLKEH---------KKSISALYISGILSLSRRPLNDSNLL--NLI 90 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhC---------CcceehHHHHHHHHHhhcchhhhhhh--hhh
Confidence 445578999999999999999997 999999999888753 55677899999999999999998887 666
Q ss_pred ccchhccCccch----------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 004848 293 EIPVIEEGQEHA----------LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ 362 (727)
Q Consensus 293 ~~~~~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 362 (727)
..........-. ...-.+++.||.||..+|++++|...|++++++ +|..+.++.++|..|..
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEE 162 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHH
Confidence 654221100000 001136889999999999999999999999999 79999999999999999
Q ss_pred hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 004848 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY 442 (727)
Q Consensus 363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 442 (727)
. ++++|+.++.+|+...-........ - -.....+...-.+++.-....++.+. .-.....+..+.-+-..|
T Consensus 163 ~-dL~KA~~m~~KAV~~~i~~kq~~~~--~--e~W~k~~~~~~~d~d~f~~i~~ki~~----~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 163 E-DKEKAITYLKKAIYRFIKKKQYVGI--E--EIWSKLVHYNSDDFDFFLRIERKVLG----HREFTRLVGLLEDLYEPY 233 (906)
T ss_pred h-hHHHHHHHHHHHHHHHHhhhcchHH--H--HHHHHHHhcCcccchHHHHHHHHHHh----hhccchhHHHHHHHHHHH
Confidence 9 9999999999999876443321111 0 01112222222333333333332221 112334455666677889
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004848 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN 485 (727)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 485 (727)
....+|++++.+++.++++ .+....+...++.+|.
T Consensus 234 ~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 234 KALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH
Confidence 9999999999999999998 7778888999999887
No 116
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=2.3e-07 Score=97.83 Aligned_cols=301 Identities=16% Similarity=0.161 Sum_probs=168.7
Q ss_pred HHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHH
Q 004848 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG 350 (727)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 350 (727)
.|.+...+|-.++|..+|++.-. +-.|-..|...|.+++|.+..+.-- ....-
T Consensus 806 vAvLAieLgMlEeA~~lYr~ckR-----------------~DLlNKlyQs~g~w~eA~eiAE~~D----------RiHLr 858 (1416)
T KOG3617|consen 806 VAVLAIELGMLEEALILYRQCKR-----------------YDLLNKLYQSQGMWSEAFEIAETKD----------RIHLR 858 (1416)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH-----------------HHHHHHHHHhcccHHHHHHHHhhcc----------ceehh
Confidence 35556677888888888877543 2235566777888887776654321 23455
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH----HHHhcCCC-CCH-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848 351 ETCRYLAEAHVQALQFSEAQKFCQMALD----IHKDNGSP-ASL-------EEAADRRLMGLICETKGDHEAALEHLVLA 418 (727)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~----~~~~~~~~-~~~-------~~a~~~~~l~~~~~~~g~~~~A~~~~~~a 418 (727)
..|++.|..+...++.+.|+++|+++-. +.+-..+. ..+ ..-..|...|......|+.+.|+.+|..|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 7889999999999999999999987621 11110000 000 00134666777778888888888888776
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004848 419 SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE 498 (727)
Q Consensus 419 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 498 (727)
.. |+.+-.+.+.+|+.++|....++. ....+.+.||+.|...|++.+|+.+|.
T Consensus 939 ~D--------------~fs~VrI~C~qGk~~kAa~iA~es-------------gd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 939 KD--------------YFSMVRIKCIQGKTDKAARIAEES-------------GDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred hh--------------hhhheeeEeeccCchHHHHHHHhc-------------ccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 32 233334444445544444332221 122344556666666666666665554
Q ss_pred HH------HHHHhcCCCCCChHhHHH--------HHHHHHHHHHhcc-cHHHHHHHHHH------------------HHH
Q 004848 499 NA------LRIYEKPVPGVPPEEIAS--------GLTDVSSIYESMN-ELEQAIKLLQK------------------ALK 545 (727)
Q Consensus 499 ~a------l~~~~~~~~~~~~~~~~~--------~~~~la~~~~~~g-~~~~A~~~~~~------------------al~ 545 (727)
+| ++++++.. -....+. -+...|..|...| ..+.|..+|.+ +++
T Consensus 992 rAqafsnAIRlcKEnd---~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~ 1068 (1416)
T KOG3617|consen 992 RAQAFSNAIRLCKEND---MKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALD 1068 (1416)
T ss_pred HHHHHHHHHHHHHhcC---HHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHH
Confidence 43 22332210 0000000 0111223333333 34444444332 334
Q ss_pred HHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH------HHHHHHHHhC-----------------CCCchhHHHH
Q 004848 546 IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK------NAISKLRAIG-----------------ERKSAFFGVA 602 (727)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------~al~~~~~~~-----------------~~~~~~~~~~ 602 (727)
+........ .-+.++..-+..+....+|++|..++- .|+.++...+ ..+......+
T Consensus 1069 lIa~DLd~~-sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~v 1147 (1416)
T KOG3617|consen 1069 LIAKDLDAG-SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQV 1147 (1416)
T ss_pred HHHHhcCCC-CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHH
Confidence 433332222 224566777888888899999877654 4444432211 1111223468
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848 603 LNQMGLACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 603 ~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (727)
+..+|.++.++|.|..|-+-|.+|-..
T Consensus 1148 Leqvae~c~qQG~Yh~AtKKfTQAGdK 1174 (1416)
T KOG3617|consen 1148 LEQVAELCLQQGAYHAATKKFTQAGDK 1174 (1416)
T ss_pred HHHHHHHHHhccchHHHHHHHhhhhhH
Confidence 899999999999999999988887544
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.20 E-value=1.4e-09 Score=119.76 Aligned_cols=162 Identities=14% Similarity=0.084 Sum_probs=141.0
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004848 317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRR 396 (727)
Q Consensus 317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~ 396 (727)
+....+....+...+-+++.+.+. .|....+++.||.+....|.+++|..+++.++++.|+.. .++.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~--------~a~~ 124 (694)
T PRK15179 58 VLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS--------EAFI 124 (694)
T ss_pred HHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH--------HHHH
Confidence 334445555555556666666554 577899999999999999999999999999999998764 6799
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004848 397 LMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV 476 (727)
Q Consensus 397 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 476 (727)
.++.++.+.+++++|+..+++++. ..|..+..++.+|.++..+|++++|+.+|++++.. +|....+
T Consensus 125 ~~a~~L~~~~~~eeA~~~~~~~l~------~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~ 190 (694)
T PRK15179 125 LMLRGVKRQQGIEAGRAEIELYFS------GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENG 190 (694)
T ss_pred HHHHHHHHhccHHHHHHHHHHHhh------cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHH
Confidence 999999999999999999999975 47788899999999999999999999999999985 7888999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004848 477 FVRLADMYNRTGKLRESKSYCENALRIYE 505 (727)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (727)
+..+|.++...|+.++|...|+++++...
T Consensus 191 ~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 191 YVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999863
No 118
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=1.7e-08 Score=92.29 Aligned_cols=210 Identities=14% Similarity=0.092 Sum_probs=163.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004848 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN 485 (727)
Q Consensus 406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 485 (727)
.+.++.++++...+.........++...++-.+..+....|+.+.|..++++.... .|....+...-|..+.
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--------fp~S~RV~~lkam~lE 97 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--------FPGSKRVGKLKAMLLE 97 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--------CCCChhHHHHHHHHHH
Confidence 35566666666655444444345566667777778888899999999999887766 4666677788899999
Q ss_pred HcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 004848 486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565 (727)
Q Consensus 486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 565 (727)
..|.+++|+++|+..++- +|....++-..-.+...+|+.-+|++.+..-++.+... ..+|..++
T Consensus 98 a~~~~~~A~e~y~~lL~d---------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-------~EAW~eLa 161 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLED---------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-------QEAWHELA 161 (289)
T ss_pred HhhchhhHHHHHHHHhcc---------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-------HHHHHHHH
Confidence 999999999999988765 34445556666677788899999999999999888765 58999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcCCCCccHH
Q 004848 566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY---SINEAVELFEEARSILEQECGPYHPDTL 642 (727)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~ 642 (727)
.+|...|+|++|.-++++.+=+ .|+....+..+|.+++-+| ++.-|.++|.+++++ .|...
T Consensus 162 eiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl--------~~~~~ 225 (289)
T KOG3060|consen 162 EIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL--------NPKNL 225 (289)
T ss_pred HHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--------ChHhH
Confidence 9999999999999999998865 3445677778888887766 678899999999999 77666
Q ss_pred HHHHHHHHHHHHc
Q 004848 643 GVYSNLAGTYDAI 655 (727)
Q Consensus 643 ~~~~~la~~~~~~ 655 (727)
.+++.+-.|....
T Consensus 226 ral~GI~lc~~~l 238 (289)
T KOG3060|consen 226 RALFGIYLCGSAL 238 (289)
T ss_pred HHHHHHHHHHHHH
Confidence 6777666655443
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.18 E-value=1.7e-08 Score=105.56 Aligned_cols=227 Identities=18% Similarity=0.151 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004848 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341 (727)
Q Consensus 262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 341 (727)
|.....-..++..+...|-...|+..|++.- .|.....||...|+..+|..+..+-++.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----------------mw~~vi~CY~~lg~~~kaeei~~q~lek---- 453 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----------------MWDPVILCYLLLGQHGKAEEINRQELEK---- 453 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----------------HHHHHHHHHHHhcccchHHHHHHHHhcC----
Confidence 3445556778999999999999999998742 3677889999999999998887776653
Q ss_pred hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT 421 (727)
Q Consensus 342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 421 (727)
+..+..|..+|++.... .+|+++.++..... +.+...+|......++|.++..+++..+.
T Consensus 454 -----~~d~~lyc~LGDv~~d~-------s~yEkawElsn~~s-------arA~r~~~~~~~~~~~fs~~~~hle~sl~- 513 (777)
T KOG1128|consen 454 -----DPDPRLYCLLGDVLHDP-------SLYEKAWELSNYIS-------ARAQRSLALLILSNKDFSEADKHLERSLE- 513 (777)
T ss_pred -----CCcchhHHHhhhhccCh-------HHHHHHHHHhhhhh-------HHHHHhhccccccchhHHHHHHHHHHHhh-
Confidence 44556666666665544 45555555554332 23466677777789999999999998876
Q ss_pred HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004848 422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501 (727)
Q Consensus 422 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 501 (727)
..+.....|+.+|.+..+.+++..|..+|..++.+ .|+...+|.+++..|...++-.+|...+.+|+
T Consensus 514 -----~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl 580 (777)
T KOG1128|consen 514 -----INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL 580 (777)
T ss_pred -----cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh
Confidence 36777889999999999999999999999999998 89999999999999999999999999999999
Q ss_pred HHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC
Q 004848 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (727)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (727)
+.-. ....+|-+.-.+....|.+++|+..|.+.+.+.....
T Consensus 581 Kcn~---------~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 581 KCNY---------QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred hcCC---------CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 8832 2245677777888899999999999999998876654
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.11 E-value=1e-08 Score=95.94 Aligned_cols=120 Identities=14% Similarity=0.168 Sum_probs=106.5
Q ss_pred cccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 004848 530 MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA 609 (727)
Q Consensus 530 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 609 (727)
.++.++++..+++++...++. ...|..+|.+|...|++++|+..|++++.+. +....++..+|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~-------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--------P~~~~~~~~lA~a 116 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN-------SEQWALLGEYYLWRNDYDNALLAYRQALQLR--------GENAELYAALATV 116 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHH
Confidence 677789999999999887666 5789999999999999999999999999872 2346788999987
Q ss_pred H-HHhCC--HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848 610 C-VQRYS--INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (727)
Q Consensus 610 ~-~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (727)
+ ...|+ +++|..+++++++. +|....+++.+|.++...|++++|+.+|++++++.
T Consensus 117 L~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 117 LYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4 67777 59999999999999 89999999999999999999999999999999863
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.10 E-value=2e-08 Score=105.08 Aligned_cols=223 Identities=17% Similarity=0.159 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004848 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA 472 (727)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 472 (727)
.....++.++...|-...|+..|++. ..|.....||...|+..+|.....+-++. +.
T Consensus 399 q~q~~laell~slGitksAl~I~Erl--------------emw~~vi~CY~~lg~~~kaeei~~q~lek---------~~ 455 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERL--------------EMWDPVILCYLLLGQHGKAEEINRQELEK---------DP 455 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhH--------------HHHHHHHHHHHHhcccchHHHHHHHHhcC---------CC
Confidence 34567888899999999999888765 35667778899999998888877766552 44
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCC
Q 004848 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (727)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (727)
.+..|..+|.+... -.+|++|.++... ..+.+...+|......++|.++.++++.++++.+-.
T Consensus 456 d~~lyc~LGDv~~d-------~s~yEkawElsn~--------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq-- 518 (777)
T KOG1128|consen 456 DPRLYCLLGDVLHD-------PSLYEKAWELSNY--------ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQ-- 518 (777)
T ss_pred cchhHHHhhhhccC-------hHHHHHHHHHhhh--------hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccc--
Confidence 44555555555444 4556666666432 224456667777777899999999999999886654
Q ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848 553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (727)
Q Consensus 553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (727)
..+|+.+|.+..+.+++..|..+|..++.+ .+..+.+|++++.+|...++..+|...+++|++.
T Consensus 519 -----~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc--- 582 (777)
T KOG1128|consen 519 -----LGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC--- 582 (777)
T ss_pred -----hhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc---
Confidence 468899999999999999999999999886 3445789999999999999999999999999987
Q ss_pred hcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 004848 633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL 676 (727)
Q Consensus 633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 676 (727)
+.....+|.|...+....|.+++|+..|.+.+.+.....
T Consensus 583 -----n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 583 -----NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred -----CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 455556788888888999999999999999988866543
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=3.4e-08 Score=90.46 Aligned_cols=195 Identities=16% Similarity=0.117 Sum_probs=149.0
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHH
Q 004848 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM 567 (727)
Q Consensus 488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 567 (727)
.+.++-+++....+.....- .-.++...++-.+..+....|+.+-|..++++....++.. ..+...-|..
T Consensus 26 rnseevv~l~~~~~~~~k~~---~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S-------~RV~~lkam~ 95 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG---ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGS-------KRVGKLKAML 95 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc---ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC-------hhHHHHHHHH
Confidence 34555555555555544332 1133456677778888888999999999998877766544 2445566888
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 004848 568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN 647 (727)
Q Consensus 568 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 647 (727)
+...|++++|+++|+..++- ++....++-..-.+...+|+.-+|++.+..-++. .+...++|..
T Consensus 96 lEa~~~~~~A~e~y~~lL~d--------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--------F~~D~EAW~e 159 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLED--------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--------FMNDQEAWHE 159 (289)
T ss_pred HHHhhchhhHHHHHHHHhcc--------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--------hcCcHHHHHH
Confidence 89999999999999988762 2333445555556677888888999999998888 6777889999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCC---hhHHHHHHHHHHHHHhhh
Q 004848 648 LAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR---VRSRKAQSLETLLDANSR 717 (727)
Q Consensus 648 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~---~~~A~~~~l~~al~~~p~ 717 (727)
|+.+|...|+|++|.-+|++++-+ .|.....+.+||.++.-+|- +.-|. ++|.++++++|.
T Consensus 160 LaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~ar-kyy~~alkl~~~ 223 (289)
T KOG3060|consen 160 LAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELAR-KYYERALKLNPK 223 (289)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHhChH
Confidence 999999999999999999999865 68888888899999887774 55688 999999999984
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.06 E-value=9.9e-09 Score=88.70 Aligned_cols=110 Identities=16% Similarity=0.087 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004848 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (727)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (727)
....+.+|..++..|++++|...|+-...+ ++.....|.+||.++..+|++.+|+..|.+|+.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-------- 98 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-------- 98 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------
Confidence 456788999999999999999999998876 4557789999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004848 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKR 688 (727)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~ 688 (727)
+|+.+..++++|.|+...|+.+.|...|+.++... ..+|.......
T Consensus 99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~-----~~~~~~~~l~~ 144 (157)
T PRK15363 99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC-----GEVSEHQILRQ 144 (157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----ccChhHHHHHH
Confidence 88888999999999999999999999999999986 24566555443
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.06 E-value=2.3e-09 Score=94.61 Aligned_cols=102 Identities=18% Similarity=0.223 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004848 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (727)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~ 678 (727)
.......+|.++...|++++|+..|++++.. +|....++..+|.++..+|++++|+.++++++.+
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------- 80 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL------- 80 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 4567889999999999999999999999998 7888899999999999999999999999999976
Q ss_pred CChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+|.....++.+|.++...|++++|. ..|+++++++|.
T Consensus 81 -~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~ 117 (135)
T TIGR02552 81 -DPDDPRPYFHAAECLLALGEPESAL-KALDLAIEICGE 117 (135)
T ss_pred -CCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhccc
Confidence 6888899999999999999999999 999999999987
No 125
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.05 E-value=3.5e-09 Score=91.46 Aligned_cols=100 Identities=14% Similarity=0.067 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004848 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (727)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~ 678 (727)
....++.+|..+...|++++|..+|+-...+ +|.....|++||.|+..+|++++|+..|.+++.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L------- 98 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI------- 98 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------
Confidence 4567788999999999999999999999999 9999999999999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 004848 679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (727)
Q Consensus 679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (727)
+|+++..++++|.++...|+.+.|. +.|+.++...
T Consensus 99 -~~ddp~~~~~ag~c~L~lG~~~~A~-~aF~~Ai~~~ 133 (157)
T PRK15363 99 -KIDAPQAPWAAAECYLACDNVCYAI-KALKAVVRIC 133 (157)
T ss_pred -CCCCchHHHHHHHHHHHcCCHHHHH-HHHHHHHHHh
Confidence 6888899999999999999999999 9999999987
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.04 E-value=1.3e-08 Score=94.15 Aligned_cols=168 Identities=15% Similarity=0.176 Sum_probs=141.8
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q 004848 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (727)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (727)
..|....+ ..++..+...|+-+.+..+..++... ++.....+..+|...+..|+|.+|+..+.++..+
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--- 129 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--- 129 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc---
Confidence 45555566 88899999999999999988887665 6777777777999999999999999999999988
Q ss_pred CCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586 (727)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 586 (727)
.|..+.+|+.+|.+|.+.|++++|...|.+++++.+..+ .+..++|..|.-.|+++.|..++..+..
T Consensus 130 ------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p-------~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 130 ------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP-------SIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred ------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc-------hhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455578999999999999999999999999999987663 6789999999999999999999998876
Q ss_pred HHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004848 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (727)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 627 (727)
. +.....+..+++.+...+|++.+|.....+-+
T Consensus 197 ~--------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 197 S--------PAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred C--------CCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 3 22234688899999999999999988765533
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.04 E-value=2e-08 Score=93.01 Aligned_cols=167 Identities=17% Similarity=0.148 Sum_probs=141.7
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (727)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (727)
.|....+ ..++..+...|+-+.+..+..++... ++.....+..+|...+..|++.+|+..++++..+.+.
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~---------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~ 132 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA---------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT 132 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc---------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC
Confidence 5777777 89999999999999998888886555 2333445666999999999999999999999988766
Q ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (727)
. ...|..+|.+|.+.|+++.|..-|.+++++... ...+++++|..+.-.|+++.|..++..+...
T Consensus 133 d-------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~--------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 133 D-------WEAWNLLGAALDQLGRFDEARRAYRQALELAPN--------EPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred C-------hhhhhHHHHHHHHccChhHHHHHHHHHHHhccC--------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 5 578999999999999999999999999998432 3468999999999999999999999999876
Q ss_pred HHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004848 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV 669 (727)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 669 (727)
-+....+..+|+.+...+|++.+|...-.+-+
T Consensus 198 --------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 198 --------PAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred --------CCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 45566788999999999999999998776544
No 128
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.03 E-value=1.3e-09 Score=85.44 Aligned_cols=77 Identities=34% Similarity=0.544 Sum_probs=71.1
Q ss_pred CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 004848 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (727)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (727)
||+.+.++.++|.+|..+|++++|+.+|++++.+ .+..|+.+|..+.++.++|.++..+|++++|+ +++++++++..
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~-~~~~~al~i~~ 77 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEAL-EYYQKALDIFE 77 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHH-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhhc
Confidence 5788999999999999999999999999999999 77788888999999999999999999999999 99999998864
No 129
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.03 E-value=1.6e-09 Score=84.85 Aligned_cols=76 Identities=28% Similarity=0.386 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004848 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (727)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (727)
+..+.++.++|.+|..+|++++|+.+|++++++ .+..+++++..+.++.++|.+|..+|++++|+.++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 456789999999999999999999999999999 6666767788899999999999999999999999999999865
No 130
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.02 E-value=3.1e-06 Score=88.39 Aligned_cols=268 Identities=13% Similarity=0.104 Sum_probs=144.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCch
Q 004848 269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR 348 (727)
Q Consensus 269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 348 (727)
...|..+...|+++.|+..|-++-.+. ..........+|.+|+..++..... ..
T Consensus 710 e~wg~hl~~~~q~daainhfiea~~~~-----------------kaieaai~akew~kai~ildniqdq---------k~ 763 (1636)
T KOG3616|consen 710 EAWGDHLEQIGQLDAAINHFIEANCLI-----------------KAIEAAIGAKEWKKAISILDNIQDQ---------KT 763 (1636)
T ss_pred HHHhHHHHHHHhHHHHHHHHHHhhhHH-----------------HHHHHHhhhhhhhhhHhHHHHhhhh---------cc
Confidence 344666677777777777776654321 1112223334555555554433222 12
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 004848 349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD 428 (727)
Q Consensus 349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 428 (727)
....|-.++..|...|+|+.|.++|.++-. ...-...|-+.|++.+|..+-.+.. .+
T Consensus 764 ~s~yy~~iadhyan~~dfe~ae~lf~e~~~----------------~~dai~my~k~~kw~da~kla~e~~-------~~ 820 (1636)
T KOG3616|consen 764 ASGYYGEIADHYANKGDFEIAEELFTEADL----------------FKDAIDMYGKAGKWEDAFKLAEECH-------GP 820 (1636)
T ss_pred ccccchHHHHHhccchhHHHHHHHHHhcch----------------hHHHHHHHhccccHHHHHHHHHHhc-------Cc
Confidence 223455677788888888888888866522 2233455667778887776665442 23
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHhcCCC---------Ch-hHHHHHHHHHHHHHHcCChHH
Q 004848 429 AEVASVDCSIGDTYLSLSRYDEAGFAY------QKALTAFKTNKGEN---------HP-AVASVFVRLADMYNRTGKLRE 492 (727)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~---------~~-~~~~~~~~la~~~~~~g~~~~ 492 (727)
......|...+.-+-..|+|.+|.++| .+++.++.+.+-.+ ++ ....+...+|.-|...|+...
T Consensus 821 e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lka 900 (1636)
T KOG3616|consen 821 EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKA 900 (1636)
T ss_pred hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhH
Confidence 344455666666666677777666655 34555544433211 22 234566777888888888888
Q ss_pred HHHHHHHHH-------------------HHHhcCCCCCChHhHHHHHH------HHHHHHHhcccHHHHHHH------HH
Q 004848 493 SKSYCENAL-------------------RIYEKPVPGVPPEEIASGLT------DVSSIYESMNELEQAIKL------LQ 541 (727)
Q Consensus 493 A~~~~~~al-------------------~~~~~~~~~~~~~~~~~~~~------~la~~~~~~g~~~~A~~~------~~ 541 (727)
|...|-++- ++.+...+.+.+...+..|. .-..++-+.|-.+.|+.. |+
T Consensus 901 ae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd 980 (1636)
T KOG3616|consen 901 AEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFD 980 (1636)
T ss_pred HHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchh
Confidence 877765442 22222211111111111110 001223333444444432 12
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848 542 KALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (727)
Q Consensus 542 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (727)
-+.++.+- +.......+...++..+...|++++|-+.|-+++++
T Consensus 981 ~afdlari--~~k~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 981 FAFDLARI--AAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred hHHHHHHH--hhhccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 22222211 111223356677888899999999999999999875
No 131
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=2.2e-09 Score=101.16 Aligned_cols=101 Identities=22% Similarity=0.343 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004848 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (727)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~ 679 (727)
+.-+-.-|.-+.+.++|.+|+..|.+|+++ +|..+..|.+.|.+|.++|.++.|++..+.|+.+
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-------- 144 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-------- 144 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--------
Confidence 455666688888999999999999999999 8999999999999999999999999999999987
Q ss_pred ChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+|.+..+|.+||.+|..+|++++|+ +.|+++|+++|.
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~~A~-~aykKaLeldP~ 181 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYEEAI-EAYKKALELDPD 181 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHHHHH-HHHHhhhccCCC
Confidence 8999999999999999999999999 999999999998
No 132
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=4.3e-09 Score=99.19 Aligned_cols=121 Identities=22% Similarity=0.254 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 004848 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (727)
Q Consensus 557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (727)
.+..+-.-|.-+.+.++|.+|+..|.+||.+ .+..+..|.+.|.+|.++|.++.|++..+.|+.+
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------- 144 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------- 144 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-------
Confidence 3455566788889999999999999999997 3345789999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChh
Q 004848 637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVR 701 (727)
Q Consensus 637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~ 701 (727)
+|....+|..||.+|..+|++++|++.|++++++ +|++...+.+|..+-.+++...
T Consensus 145 -Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 -DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred -ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999987 6777777888877777766655
No 133
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.01 E-value=3.5e-06 Score=87.99 Aligned_cols=226 Identities=16% Similarity=0.192 Sum_probs=138.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHH------hcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004848 268 LHVIAAIYCSLGQYNEAIPVLEQ------SIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341 (727)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 341 (727)
|..-|.+|.+..++++|+++|.+ ++++.+... |...+..--..|.-+...|+++.|+.+|-.+-.+.+.
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka- 738 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA- 738 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH-
Confidence 34455666666777778877764 333322111 1222233445677788888888888888776555322
Q ss_pred hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT 421 (727)
Q Consensus 342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 421 (727)
........+|.+|+..+...-+..... ..|-.++.-|...|+|+.|.++|.++-
T Consensus 739 ---------------ieaai~akew~kai~ildniqdqk~~s---------~yy~~iadhyan~~dfe~ae~lf~e~~-- 792 (1636)
T KOG3616|consen 739 ---------------IEAAIGAKEWKKAISILDNIQDQKTAS---------GYYGEIADHYANKGDFEIAEELFTEAD-- 792 (1636)
T ss_pred ---------------HHHHhhhhhhhhhHhHHHHhhhhcccc---------ccchHHHHHhccchhHHHHHHHHHhcc--
Confidence 112233456777776665443322222 225678888999999999999997662
Q ss_pred HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHH----
Q 004848 422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC---- 497 (727)
Q Consensus 422 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~---- 497 (727)
....--.+|.+.|+|.+|.++..+... .......|...+.-+-..|+|.+|..+|
T Consensus 793 ------------~~~dai~my~k~~kw~da~kla~e~~~---------~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 793 ------------LFKDAIDMYGKAGKWEDAFKLAEECHG---------PEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred ------------hhHHHHHHHhccccHHHHHHHHHHhcC---------chhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 122234578889999998877665532 3455667777788888888888887776
Q ss_pred --HHHHHHHhcCCCCC---------ChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 004848 498 --ENALRIYEKPVPGV---------PPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (727)
Q Consensus 498 --~~al~~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (727)
.+++.++.+....+ ...........+|.-|...|+...|...|-++-+
T Consensus 852 ~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 852 EPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred CchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 45555554432111 1122344566677777777777777777766544
No 134
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.00 E-value=8.3e-06 Score=88.23 Aligned_cols=343 Identities=12% Similarity=0.024 Sum_probs=222.8
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccch
Q 004848 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296 (727)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 296 (727)
++...+.+..-+..+...|. +.+||++.-.|-. + ...+..+...++-++..++..--..+.+..-.-
T Consensus 343 ~~~~~~lH~~Aa~w~~~~g~-~~eAI~hAlaA~d---------~-~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~-- 409 (894)
T COG2909 343 AARLKELHRAAAEWFAEHGL-PSEAIDHALAAGD---------P-EMAADLLEQLEWQLFNGSELSLLLAWLKALPAE-- 409 (894)
T ss_pred CCchhHHHHHHHHHHHhCCC-hHHHHHHHHhCCC---------H-HHHHHHHHhhhhhhhcccchHHHHHHHHhCCHH--
Confidence 45557777777777888886 8999988766522 1 122344455566666666655444333322110
Q ss_pred hccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004848 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL-GETDPRVGETCRYLAEAHVQALQFSEAQKFCQM 375 (727)
Q Consensus 297 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 375 (727)
.-..+| ......++......++.+|..+..++....+... .......+......|.+....|++++|+++.+.
T Consensus 410 --~l~~~P----~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~ 483 (894)
T COG2909 410 --LLASTP----RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARL 483 (894)
T ss_pred --HHhhCc----hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 001122 2245567788889999999999988876643310 000123445556678888899999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004848 376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY 455 (727)
Q Consensus 376 al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 455 (727)
++...+.... ...+.++..+|.+..-.|++++|..+..++.+..+..+.......+.+..+.++..+|+...|. -
T Consensus 484 al~~L~~~~~---~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~--~ 558 (894)
T COG2909 484 ALVQLPEAAY---RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAE--Q 558 (894)
T ss_pred HHHhcccccc---hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHH--H
Confidence 9998876643 3345678899999999999999999999999998888888888888888999999999433332 2
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHH
Q 004848 456 QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ 535 (727)
Q Consensus 456 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 535 (727)
.++............+.........+.++...-+++.+..-....+++..... .........++.|+.++...|++++
T Consensus 559 ~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~--~~~~~~~~~~~~LA~l~~~~Gdl~~ 636 (894)
T COG2909 559 EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT--PQPLLSRLALSMLAELEFLRGDLDK 636 (894)
T ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc--cchhHHHHHHHHHHHHHHhcCCHHH
Confidence 22322222222122333223333334444443447777777777777654422 1122223334689999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004848 536 AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585 (727)
Q Consensus 536 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 585 (727)
|...+.+...+...........+.++.........+|+..+|.....+..
T Consensus 637 A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 637 ALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 99999999988876532223444455555556667899999888777643
No 135
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.00 E-value=3.2e-07 Score=86.67 Aligned_cols=183 Identities=17% Similarity=0.187 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCC
Q 004848 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (727)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (727)
...++..|..++..|+|.+|+..|++++..+ +..+....+.+.+|.+++..|++++|+..+++.+..+..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~----- 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN----- 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----
Confidence 4677889999999999999999999998874 346778899999999999999999999999999999644
Q ss_pred ChHhHHHHHHHHHHHHHhcc-----------cHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Q 004848 512 PPEEIASGLTDVSSIYESMN-----------ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDS 580 (727)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 580 (727)
++....+++.+|.++..+. ...+|+..|+..+..+|+.. -..+|...
T Consensus 75 -~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~---------------------y~~~A~~~ 132 (203)
T PF13525_consen 75 -SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE---------------------YAEEAKKR 132 (203)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST---------------------THHHHHHH
T ss_pred -CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch---------------------HHHHHHHH
Confidence 5667788888888876543 34577888888887777652 12233333
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHH
Q 004848 581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD 660 (727)
Q Consensus 581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 660 (727)
+..+... .+.--..+|..|.+.|.+..|+..++.+++.+ |+.+....++..++.+|..+|..+.
T Consensus 133 l~~l~~~-----------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 133 LAELRNR-----------LAEHELYIARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHH-----------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHH-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHH
Confidence 3332222 23444567899999999999999999998873 2245556688999999999999885
Q ss_pred HH
Q 004848 661 AI 662 (727)
Q Consensus 661 A~ 662 (727)
|.
T Consensus 197 a~ 198 (203)
T PF13525_consen 197 AD 198 (203)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 136
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.97 E-value=1.7e-07 Score=105.16 Aligned_cols=465 Identities=14% Similarity=0.072 Sum_probs=298.1
Q ss_pred HHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHH
Q 004848 238 PQKALELALRAAK-SFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGD 316 (727)
Q Consensus 238 ~~~A~~~~~~Al~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~ 316 (727)
.++|++++..++. +...+..-.-.|+. .+.++..+...+++.+|..+=++++++.....+..+|. .+..+..++.
T Consensus 640 ~~dav~~~~~al~k~~~~~~~~~fnp~~---f~s~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd-~~Ks~~d~sv 715 (1236)
T KOG1839|consen 640 LDDAVKYATKALVKLVAVCGPYGFNPAG---FYSLAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPD-TMKSYGDLSV 715 (1236)
T ss_pred hHHHHHHHHHHHHHHHhhhcccccCccc---cccCceEecCccccchhhhhhHhHHHHHHHHhccccch-hHHhccccce
Confidence 3457777555543 33333322222332 33347777888999999999999999887777877775 3555777776
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004848 317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRR 396 (727)
Q Consensus 317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~ 396 (727)
.++....+.+|+.+-.+++.+.-.+.+..+|..+..+.+.+..-...+ +-+.+.+..+++-........+...+.. .
T Consensus 716 ~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H 792 (1236)
T KOG1839|consen 716 FPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-H 792 (1236)
T ss_pred eeecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-H
Confidence 777778889999999999998877777667776655544444333333 7778888888887777666666655544 3
Q ss_pred HHHHHHHH---cCCHHHHHHHHHHHHHHHH----hCCCChh-HHHHHHHHH-HHHH-----Hc---CCHHHHHHHHHHHH
Q 004848 397 LMGLICET---KGDHEAALEHLVLASMTMI----ANDQDAE-VASVDCSIG-DTYL-----SL---SRYDEAGFAYQKAL 459 (727)
Q Consensus 397 ~l~~~~~~---~g~~~~A~~~~~~al~~~~----~~~~~~~-~~~~~~~la-~~~~-----~~---g~~~~A~~~~~~al 459 (727)
.+..++.. ......+....-++..... .....+. ....+..+- ..+. .. +.+......+.++.
T Consensus 793 ~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~ 872 (1236)
T KOG1839|consen 793 ALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETIL 872 (1236)
T ss_pred HHHHHhhcccccCCCccchHHHHhhhhhhhhhhccCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHh
Confidence 33333222 2222222222211210000 0001111 000111110 0000 00 11111111222221
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH------------HHHHhcCCCCCChHhHHHHHHHHHHHH
Q 004848 460 TAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA------------LRIYEKPVPGVPPEEIASGLTDVSSIY 527 (727)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------l~~~~~~~~~~~~~~~~~~~~~la~~~ 527 (727)
... -....+...+...- .|--..+..+.... +.+...+-........+.-....+...
T Consensus 873 ~~~--------~~~~~~~~~~~~~~--~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~ 942 (1236)
T KOG1839|consen 873 LKN--------GKSKIAVEKLEKKK--RELQKPARNYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEA 942 (1236)
T ss_pred hhc--------ccchhHHHHHHHHh--hhcchhhhhccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhh
Confidence 110 00000000000000 00000011111110 000000000011112334455567777
Q ss_pred HhcccHHHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 004848 528 ESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM 606 (727)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 606 (727)
...|.+.+|.+ .-+++.+..+..+.. +.++..|..++.++...|++++|+.+-.++.-+..+....+++.....+.++
T Consensus 943 ~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 943 LLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 77888999988 888888877655553 4778889999999999999999999999999998888888888889999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004848 607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDE 686 (727)
Q Consensus 607 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~ 686 (727)
+...+..++...|+..+.+++.+..-..+++||..+.+..+++.++...++++.|+.+++.|+.+...++|+.+-.+...
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 99999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHhhh-cCCC
Q 004848 687 KRRLAELLKEAGRVRSRKAQSLETLLDANSR-VNND 721 (727)
Q Consensus 687 ~~~La~~~~~~g~~~~A~~~~l~~al~~~p~-~~~~ 721 (727)
+..++++....+++..|. ...+....+.+. ...+
T Consensus 1102 ~~~~a~l~~s~~dfr~al-~~ek~t~~iy~~qlg~~ 1136 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNAL-EHEKVTYGIYKEQLGPD 1136 (1236)
T ss_pred HHHHHHHHhhhHHHHHHH-HHHhhHHHHHHHhhCCC
Confidence 999999999999999999 999998888877 4433
No 137
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.97 E-value=2.5e-08 Score=91.44 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 004848 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (727)
Q Consensus 557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (727)
.+.+++.+|.++...|++++|+..|++++.+.. .+...+.++.++|.++...|++++|+.+|++++.+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-----~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~------- 101 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-----DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER------- 101 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 467788999999999999999999999998732 22334578999999999999999999999999998
Q ss_pred CCccHHHHHHHHHHHHH-------HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004848 637 YHPDTLGVYSNLAGTYD-------AIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK 687 (727)
Q Consensus 637 ~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~ 687 (727)
+|.....+.++|.++. .+|++++|+..+.+++..+++.++.+++....+.
T Consensus 102 -~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~ 158 (168)
T CHL00033 102 -NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQ 158 (168)
T ss_pred -CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHH
Confidence 6776777777777777 8999999999999999999999887766554443
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.96 E-value=1.9e-08 Score=88.76 Aligned_cols=110 Identities=17% Similarity=0.261 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHH
Q 004848 539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE 618 (727)
Q Consensus 539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 618 (727)
.|++++...+.. ......+|..+...|++++|...|++++... +....++..+|.++...|++++
T Consensus 5 ~~~~~l~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~~~~~~ 69 (135)
T TIGR02552 5 TLKDLLGLDSEQ-------LEQIYALAYNLYQQGRYDEALKLFQLLAAYD--------PYNSRYWLGLAACCQMLKEYEE 69 (135)
T ss_pred hHHHHHcCChhh-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHH
Confidence 455566554433 4667889999999999999999999988752 2246789999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
|+.+|++++.+ +|.....++.+|.+|...|++++|+.+|++++++
T Consensus 70 A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 70 AIDAYALAAAL--------DPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999998 7888889999999999999999999999999987
No 139
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.94 E-value=7.1e-07 Score=86.30 Aligned_cols=188 Identities=12% Similarity=0.070 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCC
Q 004848 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (727)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (727)
...++..|..+...|+|++|+..|++++... +..+....+.+.+|.+|+..+++++|+..+++.++....
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~----- 101 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT----- 101 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC-----
Confidence 4556778899999999999999999998872 234566677799999999999999999999999999543
Q ss_pred ChHhHHHHHHHHHHHHHhcc---------------c---HHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCC
Q 004848 512 PPEEIASGLTDVSSIYESMN---------------E---LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573 (727)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 573 (727)
++....+++.+|.++...+ + ..+|+..|++.++.+|+.. +
T Consensus 102 -~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~---------y------------ 159 (243)
T PRK10866 102 -HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ---------Y------------ 159 (243)
T ss_pred -CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh---------h------------
Confidence 6677888999998764443 1 2456677777777766541 0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 004848 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653 (727)
Q Consensus 574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 653 (727)
..+|...+..+... .+.--..+|..|.+.|.|..|+.-++.+++.+ |+.+...+++..++..|.
T Consensus 160 a~~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~ 223 (243)
T PRK10866 160 TTDATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYR 223 (243)
T ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHH
Confidence 12232222222221 23334467899999999999999999998873 336677789999999999
Q ss_pred HcCChHHHHHHHHH
Q 004848 654 AIGRLDDAIEILEF 667 (727)
Q Consensus 654 ~~g~~~~A~~~~~~ 667 (727)
.+|..++|..+...
T Consensus 224 ~lg~~~~a~~~~~~ 237 (243)
T PRK10866 224 QLQLNAQADKVAKI 237 (243)
T ss_pred HcCChHHHHHHHHH
Confidence 99999999877654
No 140
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=2.5e-06 Score=77.77 Aligned_cols=221 Identities=14% Similarity=0.056 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004848 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (727)
Q Consensus 392 a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (727)
+..|..-+.+|....+|++|...+.+|....+.+......+..+-..+.+...+..+.++..+|+++..++.+.+ .|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G---sp 107 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG---SP 107 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---Cc
Confidence 445566677778888999999999999988877777777888899999999999999999999999999999987 56
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC
Q 004848 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (727)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (727)
+.+..-...+--....-++++|+.+|++++.+.+. ++........+...++++.+..++++|-..+.+-..+....
T Consensus 108 dtAAmaleKAak~lenv~Pd~AlqlYqralavve~---~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~- 183 (308)
T KOG1585|consen 108 DTAAMALEKAAKALENVKPDDALQLYQRALAVVEE---DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC- 183 (308)
T ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH-
Confidence 66666666666667788999999999999999877 44455566778889999999999999998888876665544
Q ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004848 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFE 624 (727)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 624 (727)
.........+.....+|+...+|..|..+++...++ +....+....++.+|-..| ..|+.++....+.
T Consensus 184 ~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 184 DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 222233344555566777778999999999886654 2222233345555555444 4567776655543
No 141
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.91 E-value=3.6e-07 Score=86.28 Aligned_cols=183 Identities=18% Similarity=0.241 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Q 004848 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (727)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (727)
...++..|..++..|+|.+|+..|++++... +..+. ...+.+.+|.+++..|++++|+..|++.+...+.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~-a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~---- 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPY-APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN---- 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----
Confidence 5568889999999999999999999999875 33332 3456889999999999999999999999998654
Q ss_pred CCchHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q 004848 345 TDPRVGETCRYLAEAHVQAL-----------QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALE 413 (727)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~ 413 (727)
++....+++.+|.+++... ...+|+..|+..+...|+.... .+|..
T Consensus 75 -~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~----------------------~~A~~ 131 (203)
T PF13525_consen 75 -SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA----------------------EEAKK 131 (203)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH----------------------HHHHH
T ss_pred -CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH----------------------HHHHH
Confidence 6788899999999887653 2347888888888887765421 12222
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004848 414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES 493 (727)
Q Consensus 414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 493 (727)
.+..+ ....+.--+.+|..|...|.|..|+..++.+++.+. +.+....++..++..|..+|..+.|
T Consensus 132 ~l~~l---------~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp-----~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 132 RLAEL---------RNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP-----DTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHH---------HHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST-----TSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHH---------HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHhCChHHH
Confidence 22211 112233446689999999999999999999988743 3566778899999999999998854
Q ss_pred H
Q 004848 494 K 494 (727)
Q Consensus 494 ~ 494 (727)
.
T Consensus 198 ~ 198 (203)
T PF13525_consen 198 D 198 (203)
T ss_dssp H
T ss_pred H
Confidence 3
No 142
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=4.5e-08 Score=97.02 Aligned_cols=258 Identities=16% Similarity=0.111 Sum_probs=161.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004848 400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR 479 (727)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 479 (727)
.-++..|+|..++.-+... .............+.++|..+|+++..+.-+.. ...|. ..+...
T Consensus 9 rn~fy~G~Y~~~i~e~~~~------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----------~~~~~-l~av~~ 71 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEASLK------SFSPENKLERDFYQYRSYIALGQYDSVLSEIKK----------SSSPE-LQAVRL 71 (290)
T ss_dssp HHHHCTT-HHHHCHHHHCH------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----------TSSCC-CHHHHH
T ss_pred HHHHHhhhHHHHHHHhhcc------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc----------CCChh-HHHHHH
Confidence 3456789999888655411 223445566777888999999998766543311 11232 344455
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHH
Q 004848 480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG 559 (727)
Q Consensus 480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 559 (727)
++..+...++.+.++..++.. +..........+....|.++...|++++|++.+.+.- ...
T Consensus 72 la~y~~~~~~~e~~l~~l~~~-------~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~------------~lE 132 (290)
T PF04733_consen 72 LAEYLSSPSDKESALEELKEL-------LADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGG------------SLE 132 (290)
T ss_dssp HHHHHCTSTTHHCHHHHHHHC-------CCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTT------------CHH
T ss_pred HHHHHhCccchHHHHHHHHHH-------HHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccC------------ccc
Confidence 565554434444443333221 1111121223445667788888999999988886531 024
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHhcCCC
Q 004848 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY--SINEAVELFEEARSILEQECGPY 637 (727)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~ 637 (727)
.......+|+..++++.|.+.++.+.++ .+ + ...+....+++.+..| ++.+|...|++..+.
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~e-D---~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-------- 196 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQI----DE-D---SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-------- 196 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC----SC-C---HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC-c---HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--------
Confidence 4456778999999999999888775432 21 1 1222233344444455 588999999886543
Q ss_pred CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.+....++..+|.++..+|+|++|...+++++. .+|..++++.+++.+....|+..++..+++.++...+|+
T Consensus 197 ~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 197 FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 345567889999999999999999999999874 367888899999999999999955443788888888885
No 143
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=1.3e-08 Score=100.83 Aligned_cols=254 Identities=16% Similarity=0.097 Sum_probs=159.4
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004848 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437 (727)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 437 (727)
.-++..|+|..++.-+. . ... ...........+.+++..+|+++..+.-... .. .|. ..+...
T Consensus 9 rn~fy~G~Y~~~i~e~~-~---~~~----~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~-------~~-~~~-l~av~~ 71 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-L---KSF----SPENKLERDFYQYRSYIALGQYDSVLSEIKK-------SS-SPE-LQAVRL 71 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-C---HTS----TCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T-------TS-SCC-CHHHHH
T ss_pred HHHHHhhhHHHHHHHhh-c---cCC----CchhHHHHHHHHHHHHHHcCChhHHHHHhcc-------CC-Chh-HHHHHH
Confidence 34567899988886655 1 111 1123345677889999999998876654421 12 222 233345
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHH
Q 004848 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517 (727)
Q Consensus 438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 517 (727)
++..+...++.+.++..++..+. ..............|.++...|++++|+.++.+. ...
T Consensus 72 la~y~~~~~~~e~~l~~l~~~~~------~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--------------~~l 131 (290)
T PF04733_consen 72 LAEYLSSPSDKESALEELKELLA------DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--------------GSL 131 (290)
T ss_dssp HHHHHCTSTTHHCHHHHHHHCCC------TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--------------TCH
T ss_pred HHHHHhCccchHHHHHHHHHHHH------hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--------------Ccc
Confidence 55555444455555444332221 1112234456667788888899999998877653 113
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCCC
Q 004848 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG--NYSDSYDSFKNAISKLRAIGERK 595 (727)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~ 595 (727)
+.......+|..+++++.|.+.++.+.++ .++.. .+....+++.+..| ++.+|...|++..+.+
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~eD~~--l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~------- 197 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQI-----DEDSI--LTQLAEAWVNLATGGEKYQDAFYIFEELSDKF------- 197 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SCCHH--HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-------
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcHH--HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc-------
Confidence 45566788999999999999888776543 22221 22223344444455 6889999998864421
Q ss_pred chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHH
Q 004848 596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL-DDAIEILEFVVGI 671 (727)
Q Consensus 596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~ 671 (727)
.....+++.++.++..+|+|++|...+++++.. +|....++.+++.+...+|+. +.+.+++.+....
T Consensus 198 -~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 198 -GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp ---SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred -CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 123577899999999999999999999999876 788888999999999999999 4555666665543
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.84 E-value=5.5e-08 Score=83.59 Aligned_cols=106 Identities=20% Similarity=0.198 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 004848 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN 680 (727)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~ 680 (727)
.+++.+|..+...|++++|+..|.+++.. .++++....+++.+|.++...|++++|+.+|++++... +.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 46788999999999999999999999886 22234446789999999999999999999999999763 455
Q ss_pred hhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 681 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 681 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+....++..+|.++...|++++|. ..++++++..|+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~~p~ 108 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAK-ATLQQVIKRYPG 108 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHH-HHHHHHHHHCcC
Confidence 556788999999999999999999 999999999997
No 145
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.84 E-value=2.1e-06 Score=83.11 Aligned_cols=189 Identities=11% Similarity=0.074 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCC
Q 004848 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (727)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (727)
....++..|..+...|++++|+..|++++..... .+....+...+|.+|...+++++|+..+++.++..|+.+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~- 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP- 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC-
Confidence 4566778899999999999999999999998433 456677789999999999999999999999999987764
Q ss_pred CCccHHHHHHHHHHHHHHcC---------------CH---HHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC
Q 004848 553 QQSTVAGIEAQMGVMYYMLG---------------NY---SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY 614 (727)
Q Consensus 553 ~~~~~~~~~~~la~~~~~~g---------------~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 614 (727)
....+++.+|.++...+ +. .+|+..|++.++.++. ...
T Consensus 104 ---~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~-----S~y---------------- 159 (243)
T PRK10866 104 ---NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN-----SQY---------------- 159 (243)
T ss_pred ---chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC-----Chh----------------
Confidence 34567788887765443 22 2344555555544321 111
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004848 615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694 (727)
Q Consensus 615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~ 694 (727)
..+|...+..+... .+.--+.+|..|.+.|.|..|+.-++.+++-+ ++.+...++++.++..|
T Consensus 160 -a~~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay 222 (243)
T PRK10866 160 -TTDATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAY 222 (243)
T ss_pred -HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHH
Confidence 12333322222222 22233578999999999999999999999876 67788999999999999
Q ss_pred HHhCChhHHHHHHHHH
Q 004848 695 KEAGRVRSRKAQSLET 710 (727)
Q Consensus 695 ~~~g~~~~A~~~~l~~ 710 (727)
...|..++|. .....
T Consensus 223 ~~lg~~~~a~-~~~~~ 237 (243)
T PRK10866 223 RQLQLNAQAD-KVAKI 237 (243)
T ss_pred HHcCChHHHH-HHHHH
Confidence 9999999998 65543
No 146
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.82 E-value=8.2e-08 Score=88.05 Aligned_cols=122 Identities=17% Similarity=0.063 Sum_probs=95.4
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (727)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (727)
......+++.+|.++...|++++|+..|++++.+.. ++.....++.++|.++...|++++|+.+|++++.+.+.
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~------~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI------DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc------cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 344678889999999999999999999999999832 23445678999999999999999999999999988655
Q ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCch
Q 004848 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA 597 (727)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 597 (727)
.......++.++..+|..+...|+++.|...+.+++..+++.....|.
T Consensus 105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 422222334445555555559999999999999999888776555443
No 147
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.81 E-value=7.2e-08 Score=99.33 Aligned_cols=113 Identities=13% Similarity=0.068 Sum_probs=99.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 004848 561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD 640 (727)
Q Consensus 561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 640 (727)
+...|..++..|+|++|+.+|.+++.+. +....++..+|.+|..+|++++|+..+++++.+ +|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~--------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD--------PNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 4566888999999999999999999862 234678999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHh
Q 004848 641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA 697 (727)
Q Consensus 641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~ 697 (727)
...+++.+|.+|..+|++++|+.+|++++.+ +|....+...++.+....
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l--------~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL--------APGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987 566777777777775555
No 148
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.81 E-value=5.9e-07 Score=100.88 Aligned_cols=214 Identities=17% Similarity=0.199 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCC
Q 004848 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ 554 (727)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 554 (727)
.-....+......|.+.+|.+ .-+++.++...+ +.-++..+..+..|+.++...|++++|+.+-.++.-+.....|..
T Consensus 933 ~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~-~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 933 KDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVM-GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhh-hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 334455666777888888888 777777766543 555888999999999999999999999999999998888777765
Q ss_pred c-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004848 555 S-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633 (727)
Q Consensus 555 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (727)
. .....+.+++...+..++...|...+.++..+..-..+..++..+.+..+++.++...++++.|+.+++.|+......
T Consensus 1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v 1090 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV 1090 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 4 566778899999999999999999999999887666555666678888999999999999999999999999999999
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004848 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL 690 (727)
Q Consensus 634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~L 690 (727)
.++..-.....+..+++++..++++..|+...+....++...+|++|.........+
T Consensus 1091 ~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~ 1147 (1236)
T KOG1839|consen 1091 LGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEWL 1147 (1236)
T ss_pred cCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHHH
Confidence 998888888899999999999999999999999999999999999998876654443
No 149
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.81 E-value=4.2e-08 Score=101.04 Aligned_cols=98 Identities=15% Similarity=0.225 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh
Q 004848 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682 (727)
Q Consensus 603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~ 682 (727)
+...|..++..|++++|+.+|.+++.+ +|....+++++|.+|..+|++++|+..+++++.+ +|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 455688889999999999999999998 8888999999999999999999999999999987 688
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
...+++++|.+|..+|++++|+ ..|+++++++|.
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~-~~~~~al~l~P~ 102 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAK-AALEKGASLAPG 102 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCC
Confidence 8899999999999999999999 999999999986
No 150
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.81 E-value=1.1e-06 Score=98.23 Aligned_cols=219 Identities=12% Similarity=0.063 Sum_probs=151.2
Q ss_pred ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHH
Q 004848 208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV 287 (727)
Q Consensus 208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 287 (727)
+++..+...+|+.+-.|+.....+...++ .++|.+.+++||..+.-.- .......+.+|.+|-..| |.-+.-.+.
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~LelsE-iekAR~iaerAL~tIN~RE-eeEKLNiWiA~lNlEn~y---G~eesl~kV 1519 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSE-IEKARKIAERALKTINFRE-EEEKLNIWIAYLNLENAY---GTEESLKKV 1519 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhhh-hHHHHHHHHHHhhhCCcch-hHHHHHHHHHHHhHHHhh---CcHHHHHHH
Confidence 68888889999999999999999999998 9999999999998752110 111244556666665555 677778889
Q ss_pred HHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHH
Q 004848 288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFS 367 (727)
Q Consensus 288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 367 (727)
|++|.+.+ ....+|..|..+|...+++++|.++|+..++-+ ......|..+|..++.+++-+
T Consensus 1520 FeRAcqyc----------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF--------~q~~~vW~~y~~fLl~~ne~~ 1581 (1710)
T KOG1070|consen 1520 FERACQYC----------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF--------GQTRKVWIMYADFLLRQNEAE 1581 (1710)
T ss_pred HHHHHHhc----------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh--------cchhhHHHHHHHHHhcccHHH
Confidence 99998875 123468889999999999999999999988885 245678889999999999889
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC
Q 004848 368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR 447 (727)
Q Consensus 368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 447 (727)
.|..++.+||...|... + .......+.+-+..|+.+.+...|+..+. ..|.....|..+...-...|+
T Consensus 1582 aa~~lL~rAL~~lPk~e---H---v~~IskfAqLEFk~GDaeRGRtlfEgll~------ayPKRtDlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1582 AARELLKRALKSLPKQE---H---VEFISKFAQLEFKYGDAERGRTLFEGLLS------AYPKRTDLWSVYIDMEIKHGD 1649 (1710)
T ss_pred HHHHHHHHHHhhcchhh---h---HHHHHHHHHHHhhcCCchhhHHHHHHHHh------hCccchhHHHHHHHHHHccCC
Confidence 99999999988876632 1 12334445555555555555555544332 233333444444444444555
Q ss_pred HHHHHHHHHHHHHH
Q 004848 448 YDEAGFAYQKALTA 461 (727)
Q Consensus 448 ~~~A~~~~~~al~~ 461 (727)
.+.+..+|++++.+
T Consensus 1650 ~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1650 IKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHHHHHHHHhc
Confidence 55555555555443
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.81 E-value=3.3e-07 Score=81.59 Aligned_cols=135 Identities=22% Similarity=0.248 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccC
Q 004848 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (727)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (727)
+...+..+...+..++ +..+...+++.+.-+ ...+....+...+|.+++..|++++|+..|+.++...
T Consensus 11 a~~~y~~~~~~~~~~~-~~~~~~~~~~l~~~~------~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~----- 78 (145)
T PF09976_consen 11 ASALYEQALQALQAGD-PAKAEAAAEQLAKDY------PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA----- 78 (145)
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHC------CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----
Confidence 3455566666667776 888777666666543 2234567788899999999999999999999999853
Q ss_pred ccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004848 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377 (727)
Q Consensus 301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 377 (727)
++ +.....+.+.||.++...|++++|+..++... ..+....++..+|.+|...|++++|+..|++++
T Consensus 79 ~d-~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~---------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 79 PD-PELKPLARLRLARILLQQGQYDEALATLQQIP---------DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 22 23344568899999999999999999986622 135667788899999999999999999999875
No 152
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.81 E-value=5.4e-07 Score=82.90 Aligned_cols=111 Identities=17% Similarity=0.250 Sum_probs=89.4
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004848 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (727)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (727)
..+..++.+|..+...|++++|+.+|++++.+... +.....++..+|.++...|++++|+.+|++++..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 101 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEED-----PNDRSYILYNMGIIYASNGEHDKALEYYHQALEL------ 101 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 44667899999999999999999999999986432 2223578999999999999999999999999998
Q ss_pred CCCccHHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHHhcCCC
Q 004848 636 PYHPDTLGVYSNLAGTYDAIGR-------LDDAIEILEFVVGIREEKLGTA 679 (727)
Q Consensus 636 ~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~g~~ 679 (727)
+|.....+..+|.+|...|+ ++.|+..++++++.+++.+..+
T Consensus 102 --~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 102 --NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred --CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 78888888999999988665 5666666666666665555433
No 153
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=6.7e-06 Score=75.10 Aligned_cols=224 Identities=14% Similarity=0.112 Sum_probs=169.9
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (727)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (727)
....+..|..-+.+|....+|++|..++.+|.+-++. .......+..+-..+.+...+..+.++..+|++|..++..
T Consensus 27 ~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEn---nrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 27 WDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN---NRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE 103 (308)
T ss_pred chhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445566666777888899999999999999988766 3345566778888899999999999999999999999998
Q ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (727)
. |.+..-+.++-.-|.+ ...-++++|+.+|++++.+....... ......+...++++.+..++++|...+.+-..+
T Consensus 104 ~-GspdtAAmaleKAak~-lenv~Pd~AlqlYqralavve~~dr~--~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~ 179 (308)
T KOG1585|consen 104 C-GSPDTAAMALEKAAKA-LENVKPDDALQLYQRALAVVEEDDRD--QMAFELYGKCSRVLVRLEKFTEAATAFLKEGVA 179 (308)
T ss_pred h-CCcchHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHhccchH--HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhH
Confidence 8 7666666565554544 45678999999999999987753322 223456777889999999999999999887777
Q ss_pred HHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHH
Q 004848 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL 708 (727)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l 708 (727)
...... .+.....+.....+|....+|..|..+++...++- +-..++...+..+|-..|. .|+.++.. ..+
T Consensus 180 ~~~~~~--y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip----~f~~sed~r~lenLL~ayd-~gD~E~~~-kvl 250 (308)
T KOG1585|consen 180 ADKCDA--YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP----AFLKSEDSRSLENLLTAYD-EGDIEEIK-KVL 250 (308)
T ss_pred HHHHhh--cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc----cccChHHHHHHHHHHHHhc-cCCHHHHH-HHH
Confidence 666544 45555566677777788889999999999877652 2345677777777776654 67777776 554
No 154
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=1.2e-05 Score=80.59 Aligned_cols=409 Identities=14% Similarity=0.105 Sum_probs=247.0
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--
Q 004848 264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV-- 341 (727)
Q Consensus 264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-- 341 (727)
....+++.|.+|+....+..|++.....+....... . .......+..-..+....+.++|+.++.-.-++....
T Consensus 99 ~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le---~-~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~ 174 (696)
T KOG2471|consen 99 GTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLE---S-SSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRM 174 (696)
T ss_pred chHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 355678889999999999999998877665432111 1 1112223445556666677788877655433332110
Q ss_pred --hCCC----------CchHH-----------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004848 342 --LGET----------DPRVG-----------ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM 398 (727)
Q Consensus 342 --~~~~----------~~~~~-----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l 398 (727)
.|.. .|..+ .+....-..|....+...+..-.+.++.+..+. +.++...
T Consensus 175 ~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s--------~~~l~LK 246 (696)
T KOG2471|consen 175 KLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDS--------SMALLLK 246 (696)
T ss_pred cccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCC--------cHHHHHH
Confidence 1100 11111 122222333444445555554444444444322 2457788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCC--CChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhcCCC----
Q 004848 399 GLICETKGDHEAALEHLVLASMTMIAND--QDAE--VASVDCSIGDTYLSLSRYDEAGFAYQKALT-AFKTNKGEN---- 469 (727)
Q Consensus 399 ~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~---- 469 (727)
+..++..|+|.+|.+.+...- +....+ ..|. ....++++|.+++.+|.|.-+..+|.+|+. .+.++...-
T Consensus 247 sq~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~ 325 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAK 325 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 899999999999998875431 111111 1122 344578999999999999999999999996 444332110
Q ss_pred -----ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhccc------------
Q 004848 470 -----HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE------------ 532 (727)
Q Consensus 470 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------ 532 (727)
......++++.|..|...|++-.|.++|.++...+... +..|..+|.+.+...+
T Consensus 326 ~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n---------PrlWLRlAEcCima~~~~l~ee~~~s~s 396 (696)
T KOG2471|consen 326 TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN---------PRLWLRLAECCIMALQKGLLEEGNSSLS 396 (696)
T ss_pred ceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHHhhhhhhhhccCCcc
Confidence 12345788999999999999999999999999998662 4567777777653210
Q ss_pred -------------------------------------HHHHHHHHHHHHHHHHhC-------------------------
Q 004848 533 -------------------------------------LEQAIKLLQKALKIYNDA------------------------- 550 (727)
Q Consensus 533 -------------------------------------~~~A~~~~~~al~~~~~~------------------------- 550 (727)
.+-|.-+++.++-+.+..
T Consensus 397 ~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~ 476 (696)
T KOG2471|consen 397 RSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEG 476 (696)
T ss_pred cccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCC
Confidence 123445555555443110
Q ss_pred ---------CCCC--------c--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 004848 551 ---------PGQQ--------S--------TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQ 605 (727)
Q Consensus 551 ---------~~~~--------~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 605 (727)
.|+. + ....++.+.+.+-..+|+.-.|+..-.+.++..+ ...+|..
T Consensus 477 ~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~---------lS~~~kf 547 (696)
T KOG2471|consen 477 NTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLAD---------LSKIYKF 547 (696)
T ss_pred CCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhh---------hhhHHHH
Confidence 0000 0 1244566778888899999999999988887532 2333333
Q ss_pred H-----HHHHHHhCCHHHHHHHHHHHH------H------HHHHh------cC---CCC-------ccH--HHHHHHHHH
Q 004848 606 M-----GLACVQRYSINEAVELFEEAR------S------ILEQE------CG---PYH-------PDT--LGVYSNLAG 650 (727)
Q Consensus 606 l-----a~~~~~~g~~~~A~~~~~~al------~------~~~~~------~~---~~~-------~~~--~~~~~~la~ 650 (727)
| |.++..+.+..+|..++.--+ . -+... .+ ... ++. ...+++||.
T Consensus 548 LGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~ 627 (696)
T KOG2471|consen 548 LGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAA 627 (696)
T ss_pred HHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHH
Confidence 3 455556777888877765411 0 00100 00 011 111 236789999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 004848 651 TYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET 710 (727)
Q Consensus 651 ~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ 710 (727)
+|..+|++++|..++..|..+..+. ....+...-..+-...|+...|. ..+++
T Consensus 628 a~alq~~~dqAk~ll~~aatl~hs~------v~~~A~~lavyidL~~G~~q~al-~~lk~ 680 (696)
T KOG2471|consen 628 ALALQGHHDQAKSLLTHAATLLHSL------VNVQATVLAVYIDLMLGRSQDAL-ARLKQ 680 (696)
T ss_pred HHHHhcccHHHHHHHHHHHHhhhcc------ccHHHHHHHHHHHHhcCCCcchH-HHHHh
Confidence 9999999999999999999875321 22333333344556789999998 65554
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.79 E-value=8.4e-07 Score=78.93 Aligned_cols=123 Identities=20% Similarity=0.227 Sum_probs=97.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHH
Q 004848 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV 523 (727)
Q Consensus 444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 523 (727)
..++...+...++..+.- .++.+....+.+.+|.+++..|++++|...|+.++.. ..++.....+...|
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~------~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN------APDPELKPLARLRL 91 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------CCCHHHHHHHHHHH
Confidence 578888887777776665 2234556788899999999999999999999999987 23345556778899
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004848 524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585 (727)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 585 (727)
+.++...|++++|+..++.. ........++..+|.+|...|++++|+..|++|+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~--------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI--------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc--------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999999999998652 1222345567789999999999999999999874
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.79 E-value=2.8e-07 Score=84.82 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=85.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848 258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (727)
Q Consensus 258 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 337 (727)
..+.+..+.+++.+|..+...|++++|+.+|++++.+.. +.+ ....++..+|.++...|++++|+.+|++++..
T Consensus 28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPN-DRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445567788899999999999999999999999998742 111 12346899999999999999999999999998
Q ss_pred HHHHhCCCCchHHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHH
Q 004848 338 QKQVLGETDPRVGETCRYLAEAHVQALQ-------FSEAQKFCQMALDI 379 (727)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~ 379 (727)
.|....++..+|.++...|+ ++.|+..+.++++.
T Consensus 102 --------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~ 142 (172)
T PRK02603 102 --------NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEY 142 (172)
T ss_pred --------CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHH
Confidence 67778888899999988776 44444444444443
No 157
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.76 E-value=4e-08 Score=74.84 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhC-ChhHHHHHHHHHHHHHhh
Q 004848 642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG-RVRSRKAQSLETLLDANS 716 (727)
Q Consensus 642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g-~~~~A~~~~l~~al~~~p 716 (727)
+.+|..+|.++...|++++|+.+|++++++ +|+...+++++|.++..+| ++++|+ +.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~-~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAI-EDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHH-HHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHH-HHHHHHHHcCc
Confidence 568999999999999999999999999998 7999999999999999999 799999 99999999998
No 158
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.6e-07 Score=92.76 Aligned_cols=140 Identities=12% Similarity=0.174 Sum_probs=118.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc-------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004848 562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS-------AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634 (727)
Q Consensus 562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 634 (727)
...|..|++.|+|..|...|++|+..+......+. .....++.+++.|+.++++|.+|+....++|.+
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~----- 286 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL----- 286 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-----
Confidence 45688999999999999999999988763322221 123457899999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004848 635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (727)
Q Consensus 635 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (727)
.|....+++..|.++..+|+++.|+..|++++++ .|.+..+...|..+-.+..++.+...+.|..++..
T Consensus 287 ---~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 287 ---DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred ---CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999999988 68888888889888888877777644888888876
Q ss_pred hhh
Q 004848 715 NSR 717 (727)
Q Consensus 715 ~p~ 717 (727)
-+.
T Consensus 356 ~~~ 358 (397)
T KOG0543|consen 356 LAE 358 (397)
T ss_pred ccc
Confidence 654
No 159
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.76 E-value=0.00041 Score=75.57 Aligned_cols=340 Identities=11% Similarity=-0.021 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004848 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341 (727)
Q Consensus 262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 341 (727)
+.....+..-+..+...|...+|+.+.-.|-+- ......+...+.-+...++..-=..+ ++..+.-
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~----------~~aa~lle~~~~~L~~~~~lsll~~~----~~~lP~~ 409 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAGDP----------EMAADLLEQLEWQLFNGSELSLLLAW----LKALPAE 409 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhCCCH----------HHHHHHHHhhhhhhhcccchHHHHHH----HHhCCHH
Confidence 344555666666677777788887766554322 22333344445555555554322222 1111000
Q ss_pred hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP-ASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (727)
Q Consensus 342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~ 420 (727)
. -...+......+.......++.+|..+..++....+..... .....+...-..|.+....|+++.|+.+.+.++.
T Consensus 410 ~---l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~ 486 (894)
T COG2909 410 L---LASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV 486 (894)
T ss_pred H---HhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 0 01223344556777788899999999999888776553221 2223345556678888999999999999999986
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH--HHHHHHH
Q 004848 421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR--ESKSYCE 498 (727)
Q Consensus 421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~ 498 (727)
...... ....+.++..+|.+..-.|++++|..+..++.++.++... ......+....+.++..+|+.. +....+.
T Consensus 487 ~L~~~~-~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~--~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~ 563 (894)
T COG2909 487 QLPEAA-YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV--YHLALWSLLQQSEILEAQGQVARAEQEKAFN 563 (894)
T ss_pred hccccc-chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 554432 2334567788999999999999999999999998877642 3444566667788899999332 2223332
Q ss_pred HHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Q 004848 499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSY 578 (727)
Q Consensus 499 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 578 (727)
......... ...+.....+...+...+. +++.+..-....+.+.......+.....+++.++.+++..|++++|.
T Consensus 564 ~~~~q~l~q--~~~~~f~~~~r~~ll~~~~---r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~ 638 (894)
T COG2909 564 LIREQHLEQ--KPRHEFLVRIRAQLLRAWL---RLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKAL 638 (894)
T ss_pred HHHHHHhhh--cccchhHHHHHHHHHHHHH---HHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHH
Confidence 222221110 0111122233333333333 36777777777776655442333333334468999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004848 579 DSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (727)
Q Consensus 579 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 627 (727)
..+.+...++.... .+....+.++.-.......+|+..+|.....+..
T Consensus 639 ~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 639 AQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 99999988876544 3333344444444556667899999988887743
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.73 E-value=3.1e-07 Score=78.85 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004848 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH 638 (727)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (727)
.+++.+|..+...|++++|+..|.+++.... .......+++.+|.++...|++++|+.+|++++.. .+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYP-----KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence 4678899999999999999999999987521 12233568889999999999999999999999987 2334
Q ss_pred ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
+....++..+|.++...|++++|+.++++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 445678999999999999999999999999986
No 161
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=1.1e-05 Score=73.26 Aligned_cols=198 Identities=12% Similarity=0.144 Sum_probs=137.0
Q ss_pred HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004848 362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT 441 (727)
Q Consensus 362 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 441 (727)
-.+.+++|.++|.++-..+ ....++..|-..|.++-......+...+.+..|...+.+
T Consensus 26 g~~k~eeAadl~~~Aan~y----------------------klaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c 83 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAANMY----------------------KLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC 83 (288)
T ss_pred CCcchHHHHHHHHHHHHHH----------------------HHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 3457888888888775544 233445555555666655555556666677777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHhcCCCCCChHhHHHHH
Q 004848 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENALRIYEKPVPGVPPEEIASGL 520 (727)
Q Consensus 442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 520 (727)
|.. ++..+|+.+++++++++...+. -..-+.-+..+|.+|... .++++|+.+|+++-+.+... ......-..+
T Consensus 84 ykk-~~~~eAv~cL~~aieIyt~~Gr--f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---es~ssANKC~ 157 (288)
T KOG1586|consen 84 YKK-VDPEEAVNCLEKAIEIYTDMGR--FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---ESVSSANKCL 157 (288)
T ss_pred hhc-cChHHHHHHHHHHHHHHHhhhH--HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---hhhhhHHHHH
Confidence 755 5999999999999999877652 233455667889999875 99999999999999998652 2233344567
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848 521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (727)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (727)
...+..-...++|.+|+..|++.....-+..-.....-..+..-|.+++-..+.-.+...+++-.++
T Consensus 158 lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 158 LKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 7778888889999999999998877654432222233344556677777777766665555555444
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.72 E-value=1e-07 Score=77.96 Aligned_cols=99 Identities=25% Similarity=0.396 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 004848 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP 681 (727)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p 681 (727)
++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++.+ .|
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--------DP 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence 4678899999999999999999999988 6666678999999999999999999999999875 35
Q ss_pred hHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
....++..++.++...|++++|. ..+..+++.+|.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~~~ 100 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEAL-EAYEKALELDPN 100 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHH-HHHHHHHccCCC
Confidence 55578999999999999999999 999999988774
No 163
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=1.6e-06 Score=87.40 Aligned_cols=151 Identities=18% Similarity=0.129 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Q 004848 264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG 343 (727)
Q Consensus 264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 343 (727)
...+++..+..++..|++++|+..++..+... ++++. .+...+.++...++..+|.+.+++++.+
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-----P~N~~----~~~~~~~i~~~~nk~~~A~e~~~kal~l------ 369 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-----PDNPY----YLELAGDILLEANKAKEAIERLKKALAL------ 369 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhC-----CCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhc------
Confidence 35567888999999999999999999977664 44443 3677899999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI 423 (727)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 423 (727)
+|.......++|.+|.+.|++.+|+..++..+...+... ..|..|+..|..+|+-.+|...
T Consensus 370 --~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp--------~~w~~LAqay~~~g~~~~a~~A--------- 430 (484)
T COG4783 370 --DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP--------NGWDLLAQAYAELGNRAEALLA--------- 430 (484)
T ss_pred --CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc--------hHHHHHHHHHHHhCchHHHHHH---------
Confidence 788888899999999999999999999998887776654 4599999999999988777643
Q ss_pred hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848 424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF 462 (727)
Q Consensus 424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 462 (727)
.+..|+..|++++|+..+..+.+..
T Consensus 431 --------------~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 431 --------------RAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred --------------HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 3566778899999999988887763
No 164
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=3.1e-06 Score=84.68 Aligned_cols=132 Identities=16% Similarity=0.042 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccch-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHHh
Q 004848 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA-LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE-VQKQVL 342 (727)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~ 342 (727)
..++...+..++..|+|.+|.+.+...--.. ...+...+ ......|.++|.+++.+|.|.-+..+|.+|++ ...++.
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~-~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHK-EAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhccccc-ccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 5567778999999999999999887543221 11111111 11233478999999999999999999999996 433322
Q ss_pred CCC---------CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc
Q 004848 343 GET---------DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405 (727)
Q Consensus 343 ~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~ 405 (727)
..- .....+++++.|..|...|+.-.|.++|.++...+..+. ..|..|+.++...
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP--------rlWLRlAEcCima 382 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP--------RLWLRLAECCIMA 382 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHH
Confidence 110 123457889999999999999999999999999987764 5688888887643
No 165
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=4.6e-07 Score=89.51 Aligned_cols=145 Identities=17% Similarity=0.182 Sum_probs=117.0
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 004848 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPS------LELVMCLHVIAAIYCSLGQYNEAIPVLEQSI 292 (727)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 292 (727)
..+...-..|+.+++.|+ |..|+..|++|+..+......++. .....++.+++.||.++++|.+|+..+.++|
T Consensus 206 ~~A~~~ke~Gn~~fK~gk-~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGK-FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHHhhhHHHhhch-HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345567788999999998 999999999999998755332222 2345678999999999999999999999999
Q ss_pred ccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHH-HH
Q 004848 293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA-QK 371 (727)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~ 371 (727)
.+. +++ ..++++.|.++..+|+|+.|+..|++++++ .|.+..+...|..+..+..++.+. .+
T Consensus 285 e~~-----~~N----~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 285 ELD-----PNN----VKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred hcC-----CCc----hhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 985 333 345999999999999999999999999999 788888888888887766655544 67
Q ss_pred HHHHHHHHHH
Q 004848 372 FCQMALDIHK 381 (727)
Q Consensus 372 ~~~~al~~~~ 381 (727)
+|..++....
T Consensus 348 ~y~~mF~k~~ 357 (397)
T KOG0543|consen 348 MYANMFAKLA 357 (397)
T ss_pred HHHHHhhccc
Confidence 7777776554
No 166
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=1.4e-06 Score=87.77 Aligned_cols=152 Identities=14% Similarity=0.086 Sum_probs=129.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC
Q 004848 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (727)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (727)
+....+++..+..++..|++++|+..++..+.. .|++...+...+.++...++..+|.+.+++++.+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----- 369 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL----- 369 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----
Confidence 455678888999999999999999999997776 7899999999999999999999999999999998
Q ss_pred CCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (727)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (727)
.|.......++|..|.+.|++.+|+..++..+.-.+.. ...|..|+..|..+|+..+|...
T Consensus 370 ----~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d-------p~~w~~LAqay~~~g~~~~a~~A-------- 430 (484)
T COG4783 370 ----DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED-------PNGWDLLAQAYAELGNRAEALLA-------- 430 (484)
T ss_pred ----CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-------chHHHHHHHHHHHhCchHHHHHH--------
Confidence 34446678899999999999999999998887766555 46888999999999987665433
Q ss_pred HHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (727)
.+..|...|++++|+..+..+.+.
T Consensus 431 -----------------~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 431 -----------------RAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -----------------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 456667789999999999998876
No 167
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.68 E-value=3.8e-06 Score=94.10 Aligned_cols=222 Identities=11% Similarity=0.139 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhc
Q 004848 451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM 530 (727)
Q Consensus 451 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 530 (727)
..+.|++.+.- +|.....|......+...++.++|.+.+++||.... -........+|..+-++...-
T Consensus 1443 saeDferlvrs--------sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN----~REeeEKLNiWiA~lNlEn~y 1510 (1710)
T KOG1070|consen 1443 SAEDFERLVRS--------SPNSSILWIRYMAFHLELSEIEKARKIAERALKTIN----FREEEEKLNIWIAYLNLENAY 1510 (1710)
T ss_pred CHHHHHHHHhc--------CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCC----cchhHHHHHHHHHHHhHHHhh
Confidence 34445555544 899999999999999999999999999999998741 111233344555555555555
Q ss_pred ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q 004848 531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC 610 (727)
Q Consensus 531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 610 (727)
|.-+.-.+.|++|-+.+... .++..|..+|...+.+++|.++|+..++.+++ ...+|..+|..+
T Consensus 1511 G~eesl~kVFeRAcqycd~~--------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q--------~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYCDAY--------TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ--------TRKVWIMYADFL 1574 (1710)
T ss_pred CcHHHHHHHHHHHHHhcchH--------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc--------hhhHHHHHHHHH
Confidence 66677788888888876543 57888999999999999999999999887642 346888899999
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004848 611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL 690 (727)
Q Consensus 611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~L 690 (727)
+.+.+-+.|..++.+|++.+.+ ..........|.+-++.|+.+.+..+|+-.+.. +|...+.|.-+
T Consensus 1575 l~~ne~~aa~~lL~rAL~~lPk------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--------yPKRtDlW~VY 1640 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKSLPK------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--------YPKRTDLWSVY 1640 (1710)
T ss_pred hcccHHHHHHHHHHHHHhhcch------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--------CccchhHHHHH
Confidence 9999999999999999987322 235667788899999999999999999988854 68888888888
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHh
Q 004848 691 AELLKEAGRVRSRKAQSLETLLDAN 715 (727)
Q Consensus 691 a~~~~~~g~~~~A~~~~l~~al~~~ 715 (727)
...-.+.|+.+-+. ..|++++.+.
T Consensus 1641 id~eik~~~~~~vR-~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1641 IDMEIKHGDIKYVR-DLFERVIELK 1664 (1710)
T ss_pred HHHHHccCCHHHHH-HHHHHHHhcC
Confidence 88888899999888 9999888764
No 168
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.67 E-value=3.4e-07 Score=89.03 Aligned_cols=106 Identities=14% Similarity=0.123 Sum_probs=91.4
Q ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004848 601 VALNQMGLAC-VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (727)
Q Consensus 601 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~ 679 (727)
..++..|..+ +..|+|++|+..|+..++. .|+.+....+++.+|.+|...|++++|+..|++++..+ ++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK-----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 4455556554 5679999999999999998 12233346799999999999999999999999999875 77
Q ss_pred ChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+|...++++.+|.++..+|++++|. ..|+++++..|+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~-~~~~~vi~~yP~ 249 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAK-AVYQQVIKKYPG 249 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcC
Confidence 8889999999999999999999999 999999999997
No 169
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.65 E-value=1.8e-07 Score=71.24 Aligned_cols=64 Identities=30% Similarity=0.443 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHH
Q 004848 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG-RLDDAIEILEFVVGI 671 (727)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 671 (727)
+.+|..+|.++...|++++|+.+|.+++++ +|....+++++|.+|..+| ++++|+..+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 568999999999999999999999999999 8999999999999999999 799999999999986
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.65 E-value=1.5e-07 Score=74.71 Aligned_cols=82 Identities=24% Similarity=0.376 Sum_probs=68.6
Q ss_pred HhCCHHHHHHHHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004848 612 QRYSINEAVELFEEARSILEQECGPYHPD--TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRR 689 (727)
Q Consensus 612 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~ 689 (727)
.+|+++.|+.+|+++++. .|. ....++.+|.||...|++++|+.++++ ... ++......+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~--------~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l 63 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLEL--------DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYL 63 (84)
T ss_dssp HTT-HHHHHHHHHHHHHH--------HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHH--------CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHH
Confidence 368999999999999998 442 555788899999999999999999999 443 4666788889
Q ss_pred HHHHHHHhCChhHHHHHHHHHH
Q 004848 690 LAELLKEAGRVRSRKAQSLETL 711 (727)
Q Consensus 690 La~~~~~~g~~~~A~~~~l~~a 711 (727)
+|.++..+|++++|+ ..|+++
T Consensus 64 ~a~~~~~l~~y~eAi-~~l~~~ 84 (84)
T PF12895_consen 64 LARCLLKLGKYEEAI-KALEKA 84 (84)
T ss_dssp HHHHHHHTT-HHHHH-HHHHHH
T ss_pred HHHHHHHhCCHHHHH-HHHhcC
Confidence 999999999999999 998875
No 171
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=1.4e-05 Score=74.36 Aligned_cols=249 Identities=13% Similarity=0.047 Sum_probs=161.9
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004848 359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI 438 (727)
Q Consensus 359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 438 (727)
-++..|.|..++....+.-... . .......+.+.|..+|.+...+.-...+ . .+. ..+...+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~---~------~~e~d~y~~raylAlg~~~~~~~eI~~~-------~-~~~-lqAvr~~ 78 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK---T------DVELDVYMYRAYLALGQYQIVISEIKEG-------K-ATP-LQAVRLL 78 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc---c------hhHHHHHHHHHHHHcccccccccccccc-------c-CCh-HHHHHHH
Confidence 3556677777666554432211 1 1234667888888888877655433221 1 122 2233444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHH
Q 004848 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (727)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (727)
+.+...-++.+.-+.-+.+-+.. .........+..-|.+|...|++++|+........+ .
T Consensus 79 a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l--------------E 138 (299)
T KOG3081|consen 79 AEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL--------------E 138 (299)
T ss_pred HHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH--------------H
Confidence 55555555555444443333222 112233345555678899999999999888773333 2
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCCC
Q 004848 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML----GNYSDSYDSFKNAISKLRAIGER 594 (727)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~ 594 (727)
+...-..++.++.+++-|...++++.++..+. ++..||..|... +.+..|.-+|++.-+ +
T Consensus 139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~---------tLtQLA~awv~la~ggek~qdAfyifeE~s~-------k 202 (299)
T KOG3081|consen 139 AAALNVQILLKMHRFDLAEKELKKMQQIDEDA---------TLTQLAQAWVKLATGGEKIQDAFYIFEELSE-------K 202 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHH---------HHHHHHHHHHHHhccchhhhhHHHHHHHHhc-------c
Confidence 33334567888999999999999998886543 455566665543 356666666665443 2
Q ss_pred CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (727)
Q Consensus 595 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (727)
.++ ...+++.++.|++.+|+|++|...++.++.. ++...+++.++..+-...|...++..-+-.-+.
T Consensus 203 ~~~-T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 203 TPP-TPLLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred cCC-ChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 233 4578899999999999999999999999987 777788999999999999999888766554444
No 172
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=8.7e-06 Score=73.87 Aligned_cols=197 Identities=15% Similarity=0.116 Sum_probs=138.6
Q ss_pred HcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 004848 486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565 (727)
Q Consensus 486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 565 (727)
-.+++++|.++|.++-.+ |...+++..|-..|.++-++.... +..+..+..|...+
T Consensus 26 g~~k~eeAadl~~~Aan~-----------------------yklaK~w~~AG~aflkaA~~h~k~-~skhDaat~YveA~ 81 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAANM-----------------------YKLAKNWSAAGDAFLKAADLHLKA-GSKHDAATTYVEAA 81 (288)
T ss_pred CCcchHHHHHHHHHHHHH-----------------------HHHHHhHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHH
Confidence 345677777777666544 334445555666666666665555 55556666776667
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHhcCCCCccHHHH
Q 004848 566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR-YSINEAVELFEEARSILEQECGPYHPDTLGV 644 (727)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 644 (727)
.+|.+ ++..+|..+++++++++...+.-. .-+.-+..+|.+|..- .++++|+.+|++|-+.+..... ....-.+
T Consensus 82 ~cykk-~~~~eAv~cL~~aieIyt~~Grf~--~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees--~ssANKC 156 (288)
T KOG1586|consen 82 NCYKK-VDPEEAVNCLEKAIEIYTDMGRFT--MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES--VSSANKC 156 (288)
T ss_pred HHhhc-cChHHHHHHHHHHHHHHHhhhHHH--HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh--hhhHHHH
Confidence 76655 499999999999999998876543 2355677889888865 8999999999999998765322 2223346
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh----HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 645 YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD----VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 645 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~----~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+...|..-...++|.+|+..|++..... -+++- .-.-++.-|.++...++.-.+. ..+++..+++|.
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s-----~~n~LLKys~KdyflkAgLChl~~~D~v~a~-~ALeky~~~dP~ 227 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSS-----LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQ-RALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccchHHHhHHHHHHHHHHHHhHhcccHHHHH-HHHHHHHhcCCc
Confidence 7777888888999999999999887542 11221 1233455677777778888888 999999999997
No 173
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=1.5e-05 Score=74.09 Aligned_cols=255 Identities=15% Similarity=0.111 Sum_probs=168.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004848 400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR 479 (727)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 479 (727)
+-++..|+|..++..-.+.. ..+........+.+.|..+|.+..-+.-...+- .....+...
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~-------~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~-----------~~~lqAvr~ 77 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFS-------SSKTDVELDVYMYRAYLALGQYQIVISEIKEGK-----------ATPLQAVRL 77 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhc-------cccchhHHHHHHHHHHHHccccccccccccccc-----------CChHHHHHH
Confidence 44556788887776655432 111334455667788888888765544332211 111233344
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHH
Q 004848 480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG 559 (727)
Q Consensus 480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 559 (727)
++.....-++.+.-+.-+.+-+... ...........-|.+|...|++++|++.......+ .
T Consensus 78 ~a~~~~~e~~~~~~~~~l~E~~a~~-------~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l------------E 138 (299)
T KOG3081|consen 78 LAEYLELESNKKSILASLYELVADS-------TDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL------------E 138 (299)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHhh-------ccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH------------H
Confidence 4554444444444333333322221 11122334555678899999999999988764333 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcC
Q 004848 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECG 635 (727)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 635 (727)
+...-..++.++.+++-|...++++.++.. ..++..||..+.. .+++.+|.-+|++.-+.
T Consensus 139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~ide----------d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k------ 202 (299)
T KOG3081|consen 139 AAALNVQILLKMHRFDLAEKELKKMQQIDE----------DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK------ 202 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccch----------HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc------
Confidence 333345678888899999988888877632 2456666666654 23577787777776553
Q ss_pred CCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 004848 636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (727)
Q Consensus 636 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (727)
.+-...++..+|.|+..+|+|++|...++.++.- ++.+++++.++..+-...|.-.++..+++.++...+
T Consensus 203 --~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 203 --TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred --cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 4555668899999999999999999999999964 677788999999999999999888877888888888
Q ss_pred hh
Q 004848 716 SR 717 (727)
Q Consensus 716 p~ 717 (727)
|+
T Consensus 273 p~ 274 (299)
T KOG3081|consen 273 PE 274 (299)
T ss_pred Cc
Confidence 87
No 174
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.62 E-value=0.0003 Score=69.04 Aligned_cols=303 Identities=15% Similarity=0.074 Sum_probs=208.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchH
Q 004848 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL 305 (727)
Q Consensus 226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 305 (727)
..|......|+ -..|.....++-+++.. +. + ..++..-++.-.-.|+|+.|.+-|+..+.- |.
T Consensus 89 StGliAagAGd-a~lARkmt~~~~~llss----Dq-e--pLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---------PE 151 (531)
T COG3898 89 STGLIAAGAGD-ASLARKMTARASKLLSS----DQ-E--PLIHLLEAQAALLEGDYEDARKKFEAMLDD---------PE 151 (531)
T ss_pred hhhhhhhccCc-hHHHHHHHHHHHhhhhc----cc-h--HHHHHHHHHHHHhcCchHHHHHHHHHHhcC---------hH
Confidence 34444555665 67777777777665422 11 1 333445577778899999999999998764 23
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004848 306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (727)
Q Consensus 306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (727)
.....+..|-.--...|..+.|+.+-+.+... -|....++...-...+..|+++.|+++.+.......-..+
T Consensus 152 tRllGLRgLyleAqr~GareaAr~yAe~Aa~~--------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~ 223 (531)
T COG3898 152 TRLLGLRGLYLEAQRLGAREAARHYAERAAEK--------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKD 223 (531)
T ss_pred HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchh
Confidence 33333444444456789999999999999888 5777888888888889999999999999887665432222
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004848 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (727)
Q Consensus 386 ~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (727)
......+..+...+... ..-+...|...-.++.+ ..++.+..-..-+..++..|+..++-.+++.+-+.
T Consensus 224 ~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~K------L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---- 292 (531)
T COG3898 224 VAERSRAVLLTAKAMSL-LDADPASARDDALEANK------LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---- 292 (531)
T ss_pred hHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhh------cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc----
Confidence 11122222222222222 22356667666666643 45666666677789999999999999999988775
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 004848 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (727)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (727)
+.||.. +.+|....--+.++.-++++-.+..- .++.......++..-+..|++..|..--+.+..
T Consensus 293 --ePHP~i-------a~lY~~ar~gdta~dRlkRa~~L~sl------k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 293 --EPHPDI-------ALLYVRARSGDTALDRLKRAKKLESL------KPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred --CCChHH-------HHHHHHhcCCCcHHHHHHHHHHHHhc------CccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 235654 34444444445666777777665322 445577888899999999999999998888887
Q ss_pred HHHhCCCCCccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 004848 546 IYNDAPGQQSTVAGIEAQMGVMYYML-GNYSDSYDSFKNAISK 587 (727)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 587 (727)
+.+.. .++..|+.+-... |+-.++..++-+++..
T Consensus 358 ~~pre--------s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 358 EAPRE--------SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hCchh--------hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 76654 5677788887765 9999999999998874
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.61 E-value=2e-07 Score=74.08 Aligned_cols=83 Identities=24% Similarity=0.312 Sum_probs=67.6
Q ss_pred cCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 004848 278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357 (727)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 357 (727)
.|+|+.|+.+|++++...+ ..+ ....++.+|.+|+..|+|++|+.++++ +.. ++......+.+|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~-----~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a 65 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDP-----TNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLA 65 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHC-----GTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCC-----CCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHH
Confidence 6899999999999998862 221 233577899999999999999999999 555 356678888889
Q ss_pred HHHHHhcCHHHHHHHHHHH
Q 004848 358 EAHVQALQFSEAQKFCQMA 376 (727)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~a 376 (727)
.++..+|++++|+.+++++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 176
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.59 E-value=0.00046 Score=67.75 Aligned_cols=302 Identities=15% Similarity=0.027 Sum_probs=209.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 004848 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD 435 (727)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 435 (727)
-|.+-.-.|+-..|.++-.++-.+...... ..++..-+..-...|+++.|..-|+-.+. ++.....-+
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqe------pLIhlLeAQaal~eG~~~~Ar~kfeAMl~------dPEtRllGL 157 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQE------PLIHLLEAQAALLEGDYEDARKKFEAMLD------DPETRLLGL 157 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccch------HHHHHHHHHHHHhcCchHHHHHHHHHHhc------ChHHHHHhH
Confidence 355566678999999998888766654433 24566678888889999999999987652 222222222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHh
Q 004848 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE 515 (727)
Q Consensus 436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 515 (727)
..|-.--...|..+.|+.|.+.+... -|....++...-...+..|+++.|+++.+.......-. .+.....
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~--------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie-~~~aeR~ 228 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEK--------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE-KDVAERS 228 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhh--------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc-hhhHHHH
Confidence 22223335689999999999999887 67777788777788889999999999998766542110 0111112
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004848 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK 595 (727)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 595 (727)
.+..+...+.... .-+...|...-.+++++.++. +-.-..-+..++..|+..++-.+++.+.+. +.
T Consensus 229 rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdl-------vPaav~AAralf~d~~~rKg~~ilE~aWK~-----eP- 294 (531)
T COG3898 229 RAVLLTAKAMSLL-DADPASARDDALEANKLAPDL-------VPAAVVAARALFRDGNLRKGSKILETAWKA-----EP- 294 (531)
T ss_pred HHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCcc-------chHHHHHHHHHHhccchhhhhhHHHHHHhc-----CC-
Confidence 2223333333332 235778888888888876655 234445688999999999999999988764 22
Q ss_pred chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 004848 596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (727)
Q Consensus 596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (727)
++. ++.+|....--+.++.-++++..+..- .|+........+..-...|++..|..--+.+..+
T Consensus 295 HP~-------ia~lY~~ar~gdta~dRlkRa~~L~sl-----k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~---- 358 (531)
T COG3898 295 HPD-------IALLYVRARSGDTALDRLKRAKKLESL-----KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE---- 358 (531)
T ss_pred ChH-------HHHHHHHhcCCCcHHHHHHHHHHHHhc-----CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh----
Confidence 232 344455444445666667776655222 6788888999999999999999999988888865
Q ss_pred cCCCChhHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHH
Q 004848 676 LGTANPDVDDEKRRLAELLKEA-GRVRSRKAQSLETLLDA 714 (727)
Q Consensus 676 ~g~~~p~~~~~~~~La~~~~~~-g~~~~A~~~~l~~al~~ 714 (727)
.|. ..++..|+.+-... |+-.+.. ..+-+++..
T Consensus 359 ----~pr-es~~lLlAdIeeAetGDqg~vR-~wlAqav~A 392 (531)
T COG3898 359 ----APR-ESAYLLLADIEEAETGDQGKVR-QWLAQAVKA 392 (531)
T ss_pred ----Cch-hhHHHHHHHHHhhccCchHHHH-HHHHHHhcC
Confidence 343 56777888888776 9999999 999999875
No 177
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.52 E-value=1.1e-06 Score=82.99 Aligned_cols=104 Identities=21% Similarity=0.178 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh
Q 004848 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682 (727)
Q Consensus 603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~ 682 (727)
+++.|.-++..|+|..|...|..-++. .|+.+....++++||.+++.+|++++|...|..+++-+ +.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 677888889999999999999999887 44567788899999999999999999999999999865 78899
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.+++++.||.++.++|+.++|. ..|+++++..|.
T Consensus 214 ApdallKlg~~~~~l~~~d~A~-atl~qv~k~YP~ 247 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEAC-ATLQQVIKRYPG 247 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHCCC
Confidence 9999999999999999999999 999999999997
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.52 E-value=4.7e-06 Score=69.98 Aligned_cols=99 Identities=22% Similarity=0.166 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004848 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH 638 (727)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (727)
.+++.+|.++-..|+.++|+.+|++++.. +........++..+|..+...|++++|+..+++++.. +
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--------~ 68 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--------F 68 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------C
Confidence 35788999999999999999999999884 2233445679999999999999999999999999876 4
Q ss_pred cc---HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848 639 PD---TLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (727)
Q Consensus 639 ~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (727)
|+ ...+...++.++...|++++|+..+-.++.
T Consensus 69 p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 69 PDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 54 666778899999999999999999988774
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.52 E-value=2.5e-06 Score=83.07 Aligned_cols=104 Identities=13% Similarity=0.106 Sum_probs=87.5
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004848 559 GIEAQMGVMY-YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (727)
Q Consensus 559 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (727)
...+..+..+ ...|+|++|+..|+..+..++. ......+++.+|.+|+..|++++|+..|++++.. .|+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-----s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-----yP~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-----STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-----YPK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCC
Confidence 3445556654 5679999999999999987543 3345678999999999999999999999999987 344
Q ss_pred CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (727)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (727)
++....+++.+|.++..+|++++|...|+++++.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 77788999999999999999999999999999764
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.50 E-value=2.3e-06 Score=71.81 Aligned_cols=102 Identities=25% Similarity=0.199 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 004848 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN 680 (727)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~ 680 (727)
.+++.+|.++-..|+.++|+.+|++++.. +...+....++..+|..+..+|++++|+..+++++.-+ +++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 36788999999999999999999999885 44455667799999999999999999999999998642 222
Q ss_pred hhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 004848 681 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (727)
Q Consensus 681 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (727)
+........++.++...|+.++|+ ..+-.++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl-~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEAL-EWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHH-HHHHHHHH
Confidence 336777788899999999999999 77666554
No 181
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.50 E-value=7.2e-07 Score=72.74 Aligned_cols=97 Identities=30% Similarity=0.423 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCCh
Q 004848 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513 (727)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (727)
+++.+|.++...|++++|+..+++++.. .|....++..+|.++...+++++|+.++++++.....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------- 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD------- 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-------
Confidence 4678899999999999999999999887 4555688999999999999999999999999987322
Q ss_pred HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q 004848 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (727)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (727)
...++..+|.++...|++++|..++.+++...
T Consensus 67 --~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 67 --NAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred --chhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 23678899999999999999999999887654
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.47 E-value=9.6e-07 Score=66.14 Aligned_cols=63 Identities=24% Similarity=0.284 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+.+|..+...|++++|+..|++++.. +|....+++.+|.++..+|++++|+ ..|+++++.+|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~-~~~~~a~~~~P~ 63 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEAL-AYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcC
Confidence 46899999999999999999999954 7999999999999999999999999 999999999986
No 183
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=4.3e-05 Score=68.61 Aligned_cols=230 Identities=16% Similarity=0.084 Sum_probs=144.7
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004848 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (727)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (727)
+...+..++..|..|-..|-+.-|.-.|.+++.+ .|..+.+++.||..+...|+|+.|.+.|...+++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---- 128 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---- 128 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence 4556677888899999999999999999999999 8999999999999999999999999999999998
Q ss_pred CCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHH
Q 004848 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN-AIS 586 (727)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~ 586 (727)
+|..-.+..+.|..+.--|++.-|.+-+.+-.+. .+.++... .|..+ -...-++.+|...+.+ +..
T Consensus 129 -----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D~~DPfR~--LWLYl---~E~k~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 129 -----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD---DPNDPFRS--LWLYL---NEQKLDPKQAKTNLKQRAEK 195 (297)
T ss_pred -----CCcchHHHhccceeeeecCchHhhHHHHHHHHhc---CCCChHHH--HHHHH---HHhhCCHHHHHHHHHHHHHh
Confidence 5556677888899999999999998777655443 32332211 22111 1223466677655433 222
Q ss_pred HHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004848 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666 (727)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 666 (727)
.. ... +-++. .. .-.|+..+ ..+++++....+.... -.....++++.||..|...|+.++|..+|+
T Consensus 196 ~d-------~e~--WG~~i-V~--~yLgkiS~-e~l~~~~~a~a~~n~~-~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK 261 (297)
T COG4785 196 SD-------KEQ--WGWNI-VE--FYLGKISE-ETLMERLKADATDNTS-LAEHLTETYFYLGKYYLSLGDLDEATALFK 261 (297)
T ss_pred cc-------Hhh--hhHHH-HH--HHHhhccH-HHHHHHHHhhccchHH-HHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 11 111 11111 11 11222211 1223333322111000 011234589999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCCh
Q 004848 667 FVVGIREEKLGTANPDVDDEKRRLAELLKEAGRV 700 (727)
Q Consensus 667 ~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~ 700 (727)
-++.-.- . +.-+..-+.+.|+.+...+.+.
T Consensus 262 LaiannV--y--nfVE~RyA~~EL~~l~q~~~~l 291 (297)
T COG4785 262 LAVANNV--Y--NFVEHRYALLELSLLGQDQDDL 291 (297)
T ss_pred HHHHHhH--H--HHHHHHHHHHHHHHhccccchh
Confidence 8886321 0 0112233445555555544333
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.45 E-value=7.4e-07 Score=66.79 Aligned_cols=59 Identities=25% Similarity=0.320 Sum_probs=55.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 605 QMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 605 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
.+|..++..|++++|+..|+++++. +|....+++.+|.++..+|++++|+.+|++++++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999998 8999999999999999999999999999999987
No 185
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=0.00019 Score=67.22 Aligned_cols=301 Identities=13% Similarity=0.066 Sum_probs=186.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHH
Q 004848 354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVAS 433 (727)
Q Consensus 354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 433 (727)
..+|.-....+++++|+..|.+.+...-...+....+.-.+...++.+|...|++..-.+........+.... .+....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft-k~k~~K 85 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT-KPKITK 85 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc-chhHHH
Confidence 3456667788899999999999887632222222223345678899999999998877666655544443332 233333
Q ss_pred HHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCC
Q 004848 434 VDCSIGD-TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP 512 (727)
Q Consensus 434 ~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (727)
+...+-. +-.....++.-+..+...++.+.+... .-.....-..+..++++.|+|.+|+......+.-+++. ++
T Consensus 86 iirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr--~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~---DD 160 (421)
T COG5159 86 IIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKR--KFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY---DD 160 (421)
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh---cC
Confidence 3333322 223455677788888887776544320 11122344567889999999999999999988887773 44
Q ss_pred hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004848 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (727)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (727)
.+....++..-..+|....+..++...+..|.......+-++...+.+-..-|.+++...+|..|..+|-++++-+....
T Consensus 161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~ 240 (421)
T COG5159 161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLK 240 (421)
T ss_pred ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccccc
Confidence 56667778888899999999999988888887776655444444555555557778888999999999999988654433
Q ss_pred CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHH--HHHHHHHHhcCCCCccHHHHHHHHHHHHHH--cCChHHHHHHHHHH
Q 004848 593 ERKSAFFGVALNQMGLACVQRYSINEAVELFE--EARSILEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILEFV 668 (727)
Q Consensus 593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a 668 (727)
.... ....+..+-..-...+..++-...+. .+++.+ ......++...+..+.. +.+|..|+..|..-
T Consensus 241 ~d~k--Ac~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y-------~~r~I~am~avaea~~NRsL~df~~aL~qY~~e 311 (421)
T COG5159 241 MDVK--ACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHY-------DDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDE 311 (421)
T ss_pred chHH--HHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhh-------hhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHH
Confidence 2211 11222222222223333333333222 122211 22344566666666643 44677777777655
Q ss_pred H
Q 004848 669 V 669 (727)
Q Consensus 669 l 669 (727)
+
T Consensus 312 l 312 (421)
T COG5159 312 L 312 (421)
T ss_pred h
Confidence 4
No 186
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.41 E-value=0.00028 Score=68.67 Aligned_cols=229 Identities=28% Similarity=0.376 Sum_probs=164.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHH
Q 004848 445 LSRYDEAGFAYQKALTAFKTNKGENHPA--VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD 522 (727)
Q Consensus 445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 522 (727)
.+.+..+...+...+.. .+. ........+..+...+.+..+...+...+.. . ..+.....+..
T Consensus 36 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~ 100 (291)
T COG0457 36 LGELAEALELLEEALEL--------LPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL--E-----LLPNLAEALLN 100 (291)
T ss_pred HhhHHHHHHHHHHHHhc--------CccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh--h-----hccchHHHHHH
Confidence 45555566666655554 222 3567778888888889999998888888764 0 03344667788
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHH
Q 004848 523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV-MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV 601 (727)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 601 (727)
++..+...+++..++..+..++...... .......+. ++...|+++.|...|.+++... .. ......
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~ 168 (291)
T COG0457 101 LGLLLEALGKYEEALELLEKALALDPDP-------DLAEALLALGALYELGDYEEALELYEKALELD----PE-LNELAE 168 (291)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCCCCc-------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CC-ccchHH
Confidence 8888888888888888888887754433 112223344 7888999999999999885421 10 012345
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCcc-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 004848 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD-TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN 680 (727)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~ 680 (727)
.+...+..+...++++.|+..+.+++.. .+. ....+..++.++...+++..|...+..++...
T Consensus 169 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------- 232 (291)
T COG0457 169 ALLALGALLEALGRYEEALELLEKALKL--------NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-------- 232 (291)
T ss_pred HHHHhhhHHHHhcCHHHHHHHHHHHHhh--------CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------
Confidence 5666666678888999999999999888 555 56788889999999999999999999988763
Q ss_pred hhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 681 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 681 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
|.....+..++..+...|.++++. ..+.+++..+|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 268 (291)
T COG0457 233 PDNAEALYNLALLLLELGRYEEAL-EALEKALELDPD 268 (291)
T ss_pred cccHHHHhhHHHHHHHcCCHHHHH-HHHHHHHHhCcc
Confidence 444556677777777777788888 888888887763
No 187
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=0.00026 Score=68.16 Aligned_cols=301 Identities=16% Similarity=0.114 Sum_probs=194.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH
Q 004848 354 RYLAEAHVQALQFSEAQKFCQMALDIHKD--NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV 431 (727)
Q Consensus 354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 431 (727)
...+.......++++++..+.+.+..... ..+......-.....+|.++...|++.+-..........+...+. +..
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~K-aka 86 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSK-AKA 86 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhh-HHH
Confidence 33444455556678888888877764211 111111122345778999999999998887777665444433322 222
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCC
Q 004848 432 ASVDCSIGDTY-LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (727)
Q Consensus 432 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (727)
+.+...+-..+ ..-+..+.-+..+..+++...+... .-.....-..+..+|...++|.+|+......+.-.++.
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekR--tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--- 161 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKR--TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--- 161 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc---
Confidence 33333333333 3345566777788888776554320 11122344578899999999999999999998888774
Q ss_pred CChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004848 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590 (727)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 590 (727)
++......++..-..+|....+..+|...+..|.......+-.+...+.+-..-|.++....+|..|..||-+|.+-+..
T Consensus 162 DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s 241 (411)
T KOG1463|consen 162 DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS 241 (411)
T ss_pred ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccc
Confidence 34555677777788899999999999999888877766554444455555556688888889999999999999987766
Q ss_pred hCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHH--HHHHHHHhcCCCCccHHHHHHHHHHHHHH--cCChHHHHHHHH
Q 004848 591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEE--ARSILEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILE 666 (727)
Q Consensus 591 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~ 666 (727)
.++.. ....++-.|-.+-...+..++--.++.- +++. ......++...|.++.. +.+|+.|+.-|+
T Consensus 242 ~~~~v--~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y--------~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk 311 (411)
T KOG1463|consen 242 LDDDV--KALTSLKYMLLCKIMLNLPDDVAALLSAKLALKY--------AGRDIDAMKAVAEAFGNRSLKDFEKALADYK 311 (411)
T ss_pred cCCcH--HHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhc--------cCcchHHHHHHHHHhcCCcHHHHHHHHHHhH
Confidence 65542 2334555555666667777765554433 3332 33345677888887754 346777777777
Q ss_pred HHHH
Q 004848 667 FVVG 670 (727)
Q Consensus 667 ~al~ 670 (727)
.-+.
T Consensus 312 ~eL~ 315 (411)
T KOG1463|consen 312 KELA 315 (411)
T ss_pred HHHh
Confidence 6553
No 188
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.39 E-value=0.0009 Score=65.01 Aligned_cols=229 Identities=26% Similarity=0.300 Sum_probs=166.6
Q ss_pred hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 004848 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY 442 (727)
Q Consensus 363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 442 (727)
.+.+..+...+...+...+.. .........+..+...+++..+...+...... ...+.....+..++..+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 105 (291)
T COG0457 36 LGELAEALELLEEALELLPNS------DLAGLLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLL 105 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHH
Confidence 345566666666665554332 01245777888889999999999888877643 23556667788888889
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 004848 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD-MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (727)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (727)
...+++..++..+..++.. .+.........+. ++...|+++.|...+.+++..... .......+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~ 171 (291)
T COG0457 106 EALGKYEEALELLEKALAL--------DPDPDLAEALLALGALYELGDYEEALELYEKALELDPE------LNELAEALL 171 (291)
T ss_pred HHHhhHHHHHHHHHHHHcC--------CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ccchHHHHH
Confidence 8999999999988888875 2222333344444 899999999999999999663110 013455566
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHH
Q 004848 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV 601 (727)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 601 (727)
..+..+...++++.|+..+.+++...+.. ....+..++..+...+++..|...+..++..... ...
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~ 237 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKLNPDD------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--------NAE 237 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhhCccc------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--------cHH
Confidence 66666888899999999999999887652 2456788899999999999999999999886332 235
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848 602 ALNQMGLACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (727)
.+..++..+...+.++++...+.+++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 238 ALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5666777777777899999999999887
No 189
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=4.9e-05 Score=68.28 Aligned_cols=204 Identities=18% Similarity=0.119 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004848 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341 (727)
Q Consensus 262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 341 (727)
.+.+..++..|..|-..|-+.-|.-.|.+++.+. |.-| .+++.||..+...|+|+.|.+.|...+++
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~-----P~m~----~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---- 128 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIR-----PDMP----EVFNYLGIYLTQAGNFDAAYEAFDSVLEL---- 128 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC-----CCcH----HHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence 4456778888999999999999999999999996 3333 35889999999999999999999999999
Q ss_pred hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q 004848 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI-CETKGDHEAALEHLVLASM 420 (727)
Q Consensus 342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~-~~~~g~~~~A~~~~~~al~ 420 (727)
+|..-.+..+.|..++.-|++.-|.+-+.+-.+..++.. +..+-.. -...-+..+|...+.+-.+
T Consensus 129 ----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP----------fR~LWLYl~E~k~dP~~A~tnL~qR~~ 194 (297)
T COG4785 129 ----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP----------FRSLWLYLNEQKLDPKQAKTNLKQRAE 194 (297)
T ss_pred ----CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh----------HHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 899999999999999999999999988877666554432 2222111 2233466677655432211
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004848 421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA 500 (727)
Q Consensus 421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 500 (727)
...........+-+ .+|+..+ ...++++....+... .-......+++.||..+...|+.++|..+|+-+
T Consensus 195 --~~d~e~WG~~iV~~-------yLgkiS~-e~l~~~~~a~a~~n~-~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLa 263 (297)
T COG4785 195 --KSDKEQWGWNIVEF-------YLGKISE-ETLMERLKADATDNT-SLAEHLTETYFYLGKYYLSLGDLDEATALFKLA 263 (297)
T ss_pred --hccHhhhhHHHHHH-------HHhhccH-HHHHHHHHhhccchH-HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 11111111111112 2233221 112222222211000 002335678999999999999999999999988
Q ss_pred HHH
Q 004848 501 LRI 503 (727)
Q Consensus 501 l~~ 503 (727)
+..
T Consensus 264 ian 266 (297)
T COG4785 264 VAN 266 (297)
T ss_pred HHH
Confidence 765
No 190
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.0055 Score=67.45 Aligned_cols=155 Identities=20% Similarity=0.177 Sum_probs=89.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHh-------
Q 004848 395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA--FKTN------- 465 (727)
Q Consensus 395 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~------- 465 (727)
....|.-++..|.|+.|.-.|... .-|..++..+..+|+|..|....++|-.. ++..
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~v--------------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNV--------------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDK 1262 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHh--------------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhch
Confidence 344566666666776666655422 34556777777888888888777766322 2211
Q ss_pred --------cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHH
Q 004848 466 --------KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI 537 (727)
Q Consensus 466 --------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (727)
.|-+-.-.+.-+-.+...|...|-|++-+.+++.++-+-+. ....+..||.+|.+- ++++-.
T Consensus 1263 ~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA---------HMgmfTELaiLYsky-kp~km~ 1332 (1666)
T KOG0985|consen 1263 EEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA---------HMGMFTELAILYSKY-KPEKMM 1332 (1666)
T ss_pred hhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH---------HHHHHHHHHHHHHhc-CHHHHH
Confidence 11111122334556777888899999999999998877433 244567778777653 344444
Q ss_pred HHHHHHHHHHHhCCCCC-----ccHHHHHHHHHHHHHHcCCHHHH
Q 004848 538 KLLQKALKIYNDAPGQQ-----STVAGIEAQMGVMYYMLGNYSDS 577 (727)
Q Consensus 538 ~~~~~al~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A 577 (727)
++++--. .....+ ...+..|..+..+|.+-..|+.|
T Consensus 1333 EHl~LFw----sRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1333 EHLKLFW----SRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHHH----HhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 4433211 111111 01234566677777766666655
No 191
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.36 E-value=0.0051 Score=63.34 Aligned_cols=146 Identities=10% Similarity=-0.010 Sum_probs=93.9
Q ss_pred cccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 004848 211 SEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQ 290 (727)
Q Consensus 211 ~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 290 (727)
.+...++|.+...|..+.+.+-.+ - ++++.+.|++-+..+ |....+|.......+...+|+....+|.+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~-~~~~R~~YEq~~~~F---------P~s~r~W~~yi~~El~skdfe~VEkLF~R 78 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-P-IDKVRETYEQLVNVF---------PSSPRAWKLYIERELASKDFESVEKLFSR 78 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-C-HHHHHHHHHHHhccC---------CCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 445678999999999999877666 5 999999999988765 44466677777888889999999999999
Q ss_pred hcccchhccCccchHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH--------
Q 004848 291 SIEIPVIEEGQEHALAKFAGH-MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV-------- 361 (727)
Q Consensus 291 al~~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-------- 361 (727)
++.-. ..+..| ..|-.+....|+...+....-+|.+......+ -++.....|...+..+.
T Consensus 79 CLvkv----------LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig-~di~s~siW~eYi~FL~~vea~gk~ 147 (656)
T KOG1914|consen 79 CLVKV----------LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIG-MDIKSYSIWDEYINFLEGVEAVGKY 147 (656)
T ss_pred HHHHH----------hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHcccccccH
Confidence 98652 111122 22444445566666666666666666544333 12333344444333322
Q ss_pred -HhcCHHHHHHHHHHHHH
Q 004848 362 -QALQFSEAQKFCQMALD 378 (727)
Q Consensus 362 -~~g~~~~A~~~~~~al~ 378 (727)
...+.+.-.+.|++|+.
T Consensus 148 ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 148 EENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 22245555666666654
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.35 E-value=9.5e-06 Score=87.22 Aligned_cols=131 Identities=15% Similarity=0.130 Sum_probs=96.8
Q ss_pred HHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHH
Q 004848 563 QMGVMYYMLG---NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI--------NEAVELFEEARSILE 631 (727)
Q Consensus 563 ~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~~~ 631 (727)
..|.-|...+ ++..|+.+|++|+++ .+.++.++..++.++.....+ ..+....++++.+
T Consensus 344 lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al-- 413 (517)
T PRK10153 344 YQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL-- 413 (517)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc--
Confidence 3444444443 477899999999997 344667777777776554322 2333333333322
Q ss_pred HhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 004848 632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL 711 (727)
Q Consensus 632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a 711 (727)
+..+....++..+|..+...|++++|...+++|+.+ +|. ..+|..+|.++...|+.++|. +.|++|
T Consensus 414 ----~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------~ps-~~a~~~lG~~~~~~G~~~eA~-~~~~~A 479 (517)
T PRK10153 414 ----PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--------EMS-WLNYVLLGKVYELKGDNRLAA-DAYSTA 479 (517)
T ss_pred ----ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence 113444568888999999999999999999999987 464 689999999999999999999 999999
Q ss_pred HHHhhh
Q 004848 712 LDANSR 717 (727)
Q Consensus 712 l~~~p~ 717 (727)
+.++|.
T Consensus 480 ~~L~P~ 485 (517)
T PRK10153 480 FNLRPG 485 (517)
T ss_pred HhcCCC
Confidence 999997
No 193
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=1.1e-05 Score=71.37 Aligned_cols=119 Identities=23% Similarity=0.202 Sum_probs=98.3
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004848 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (727)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (727)
..+..+-.-|+-++..|+ |++|..-|..||.+++.. +......+|.+.|.++++++.++.|+..+.+++++.
T Consensus 93 ~kad~lK~EGN~~F~ngd-yeeA~skY~~Ale~cp~~----~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--- 164 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGD-YEEANSKYQEALESCPST----STEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--- 164 (271)
T ss_pred HHHHHHHHHHHHhhhccc-HHHHHHHHHHHHHhCccc----cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC---
Confidence 345677888999999998 999999999999998655 224556788999999999999999999999999996
Q ss_pred cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 004848 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA 359 (727)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 359 (727)
+ ....++.+.|.+|.++..|++|+.-|.+.++. +|..-.+...++.+
T Consensus 165 --p----ty~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 165 --P----TYEKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARL 211 (271)
T ss_pred --c----hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhc
Confidence 2 23445778999999999999999999999998 67665555544443
No 194
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.32 E-value=0.0031 Score=67.56 Aligned_cols=187 Identities=19% Similarity=0.125 Sum_probs=131.3
Q ss_pred HHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHH---HHHHHHHHHHH----hcccHHHHHHHHHHHHHHHHhCCCCCc
Q 004848 483 MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA---SGLTDVSSIYE----SMNELEQAIKLLQKALKIYNDAPGQQS 555 (727)
Q Consensus 483 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~ 555 (727)
+.--.|+-+.++..+.++.+. .. ...+... ..|+.....+. .....+.|.+++......+|+.
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~~-~~----i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s----- 266 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASKS-EN----IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS----- 266 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhcc-CC----cchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc-----
Confidence 333468999999999988662 11 1122111 11111111122 2345677888888888877765
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004848 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (727)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (727)
+..+...|.++...|+.++|+..|++++...... ......+++.+|.++..+.+|++|..+|.+..+.
T Consensus 267 --~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~------ 334 (468)
T PF10300_consen 267 --ALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE------ 334 (468)
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc------
Confidence 4567788999999999999999999988533322 2234578999999999999999999999998875
Q ss_pred CCCccHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004848 636 PYHPDTLGVYSNLAGTYDAIGRL-------DDAIEILEFVVGIREEKLGTANPDVDDEKRRLAE 692 (727)
Q Consensus 636 ~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~ 692 (727)
+....+...+..|.|+...|+. ++|.+++.++-.+..+..|...|-..-+......
T Consensus 335 -s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~ 397 (468)
T PF10300_consen 335 -SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQK 397 (468)
T ss_pred -cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHH
Confidence 1223444567788899999999 9999999999998888777666655544444433
No 195
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=1.4e-05 Score=70.73 Aligned_cols=125 Identities=13% Similarity=0.226 Sum_probs=104.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 004848 561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD 640 (727)
Q Consensus 561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 640 (727)
+-.-|.-++..|+|++|..-|..|+.+++.... .....+|.+.|.++++++.++.|+....+|+++ +|.
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~---e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~pt 166 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTST---EERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------NPT 166 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccH---HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------Cch
Confidence 344578889999999999999999998765443 335678999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHH
Q 004848 641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK 704 (727)
Q Consensus 641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~ 704 (727)
+..++...|.+|..+.++++|++-|++.+++ +|....+...++++--......+++
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl~~~i~ernEkm 222 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARLPPKINERNEKM 222 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999999999999986 6777777766666654444444433
No 196
>PRK15331 chaperone protein SicA; Provisional
Probab=98.30 E-value=6.2e-06 Score=71.87 Aligned_cols=99 Identities=9% Similarity=-0.017 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004848 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (727)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~ 678 (727)
.....+..|.-++..|++++|..+|+-.... ++.....+..||.|+..+++|++|+..|..+..+
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l------- 100 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL------- 100 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------
Confidence 4456777888899999999999999988877 6777778999999999999999999999999876
Q ss_pred CChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004848 679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (727)
Q Consensus 679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (727)
.++++...+..|.+|..+|+.+.|. .+|+.+++.
T Consensus 101 -~~~dp~p~f~agqC~l~l~~~~~A~-~~f~~a~~~ 134 (165)
T PRK15331 101 -LKNDYRPVFFTGQCQLLMRKAAKAR-QCFELVNER 134 (165)
T ss_pred -ccCCCCccchHHHHHHHhCCHHHHH-HHHHHHHhC
Confidence 3455556889999999999999999 999999873
No 197
>PRK11906 transcriptional regulator; Provisional
Probab=98.30 E-value=4e-05 Score=78.08 Aligned_cols=159 Identities=16% Similarity=0.146 Sum_probs=125.0
Q ss_pred HHHHHHHHHHhCC---HHHHHHHHHHHH---HHHHHHhCCCCchHHHHHHHHHHHHHHh---------cCHHHHHHHHHH
Q 004848 311 HMQLGDTYAMLGQ---LENSLMCYTTGL---EVQKQVLGETDPRVGETCRYLAEAHVQA---------LQFSEAQKFCQM 375 (727)
Q Consensus 311 ~~~la~~~~~~g~---~~~A~~~~~~al---~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~ 375 (727)
++..|......+. .+.|+.+|.+|+ .+ +|..+.+|..++.|++.. .+..+|.++.++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~l--------dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r 329 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDI--------QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDY 329 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccC--------CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 4566666655543 467888999999 55 899999999999998865 235677888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004848 376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY 455 (727)
Q Consensus 376 al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 455 (727)
|+++.+.+ +.++..+|.+....++++.|...|++|+. ..|..+.+++..|.+....|+.++|+..+
T Consensus 330 Aveld~~D--------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~------L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 330 VSDITTVD--------GKILAIMGLITGLSGQAKVSHILFEQAKI------HSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHhcCCCC--------HHHHHHHHHHHHhhcchhhHHHHHHHHhh------cCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88887655 37799999999999999999999999975 47888999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHcCChHHHHHHHHH
Q 004848 456 QKALTAFKTNKGENHPAVASVFVRLADM-YNRTGKLRESKSYCEN 499 (727)
Q Consensus 456 ~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~ 499 (727)
++++++ +|....+-...-.+ .+-....++|+.+|-+
T Consensus 396 ~~alrL--------sP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQL--------EPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHhcc--------CchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 999998 66654443333333 3445567778777654
No 198
>PRK15331 chaperone protein SicA; Provisional
Probab=98.30 E-value=1.4e-05 Score=69.74 Aligned_cols=103 Identities=11% Similarity=0.064 Sum_probs=85.8
Q ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004848 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631 (727)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 631 (727)
+.........+..|.-++..|++++|..+|+-..-. .+.....+..||.++..+++|++|+..|..|..+
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-- 100 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-- 100 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 444445566788899999999999999999876653 2233567899999999999999999999999987
Q ss_pred HhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848 632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (727)
Q Consensus 632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (727)
.++.....+..|.||..+|+...|+..|+.++.
T Consensus 101 ------~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 101 ------LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ------ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 444445679999999999999999999999986
No 199
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.29 E-value=2.4e-05 Score=64.04 Aligned_cols=103 Identities=18% Similarity=0.258 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 004848 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP 681 (727)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p 681 (727)
.+..-|......|+.+.|++.|.+++.+ -|..+.+|.+.+..+.-+|+.++|++-+.+++++. |+...
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~tr 112 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTR 112 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Cccch
Confidence 4455677888999999999999999999 78899999999999999999999999999999874 44445
Q ss_pred hHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
....++...|.+|..+|+.+.|. ..|+.+-++-..
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR-~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAAR-ADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHH-HhHHHHHHhCCH
Confidence 55678889999999999999999 999988766443
No 200
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.29 E-value=2.6e-05 Score=63.90 Aligned_cols=101 Identities=16% Similarity=0.092 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCCh
Q 004848 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513 (727)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (727)
.+-.-|......|+.+.|++.|.+++.+ -|..+.+|.+.+..+..+|+.++|+.-+++++++. +...
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa-----g~~t 111 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA-----GDQT 111 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc-----Cccc
Confidence 3445677888999999999999999999 68899999999999999999999999999999995 4445
Q ss_pred HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q 004848 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (727)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (727)
.....++...|.+|..+|+.+.|..-|+.+-++-
T Consensus 112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 112 RTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 6678899999999999999999999999988763
No 201
>PRK11906 transcriptional regulator; Provisional
Probab=98.28 E-value=1.2e-05 Score=81.73 Aligned_cols=136 Identities=10% Similarity=0.004 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHH
Q 004848 560 IEAQMGVMYYMLGN---YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR---------YSINEAVELFEEAR 627 (727)
Q Consensus 560 ~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al 627 (727)
.++..|......+. .+.|..+|.+++... ...+.++.+|..++.+++.. .+..+|.++.++|+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 33556666655553 456777888887321 11345678888888887754 24567888888999
Q ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHH
Q 004848 628 SILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQS 707 (727)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~ 707 (727)
++ ++..+.++..+|.++...++++.|...|++|+.+ +|+.+.+++..|.+....|+.++|. +.
T Consensus 332 el--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~-~~ 394 (458)
T PRK11906 332 DI--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEAR-IC 394 (458)
T ss_pred hc--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHH-HH
Confidence 88 8888999999999999999999999999999987 7999999999999999999999999 99
Q ss_pred HHHHHHHhhh
Q 004848 708 LETLLDANSR 717 (727)
Q Consensus 708 l~~al~~~p~ 717 (727)
++++++++|.
T Consensus 395 i~~alrLsP~ 404 (458)
T PRK11906 395 IDKSLQLEPR 404 (458)
T ss_pred HHHHhccCch
Confidence 9999999997
No 202
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.28 E-value=1.5e-05 Score=81.82 Aligned_cols=118 Identities=15% Similarity=0.137 Sum_probs=101.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHH
Q 004848 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643 (727)
Q Consensus 564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 643 (727)
+-.++...++++.|+.+|++..+. .+ .+...++.++...++..+|+.++.+++.. .|....
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~-------~p----ev~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~ 235 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER-------DP----EVAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSE 235 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc-------CC----cHHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHH
Confidence 445556678899999888886653 22 34556899999999999999999999977 788888
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 004848 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLE 709 (727)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~ 709 (727)
.+...|..+...++++.|+...++++.+ .|....+|+.|+.+|...|+++.|+ ..+.
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~AL-laLN 292 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENAL-LALN 292 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHH-HHHh
Confidence 9999999999999999999999999987 6999999999999999999999999 5444
No 203
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.8e-05 Score=75.84 Aligned_cols=103 Identities=17% Similarity=0.086 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHH
Q 004848 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG---RLDDAIEILEFVVGIREE 674 (727)
Q Consensus 598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~ 674 (727)
..+.-|..||.+|+.+|++..|...|.+|+++ .|+...++..+|.++..+. ...+|...+++++..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--- 222 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--- 222 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc---
Confidence 34678999999999999999999999999999 8888889999999887654 467899999999976
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 675 KLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 675 ~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+|.+..+++.||..++..|++.+|. ..++..++..|.
T Consensus 223 -----D~~~iral~lLA~~afe~g~~~~A~-~~Wq~lL~~lp~ 259 (287)
T COG4235 223 -----DPANIRALSLLAFAAFEQGDYAEAA-AAWQMLLDLLPA 259 (287)
T ss_pred -----CCccHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcCCC
Confidence 7899999999999999999999999 999999999886
No 204
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.25 E-value=0.014 Score=64.01 Aligned_cols=230 Identities=17% Similarity=0.086 Sum_probs=139.3
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHH
Q 004848 232 ISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGH 311 (727)
Q Consensus 232 ~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 311 (727)
...++ +.+|+....+.++- .|+ ..-+...-|..+.++|++++|..+++..-... ..+. .++
T Consensus 20 ld~~q-fkkal~~~~kllkk-------~Pn--~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-----~~D~----~tL 80 (932)
T KOG2053|consen 20 LDSSQ-FKKALAKLGKLLKK-------HPN--ALYAKVLKALSLFRLGKGDEALKLLEALYGLK-----GTDD----LTL 80 (932)
T ss_pred hhhHH-HHHHHHHHHHHHHH-------CCC--cHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-----CCch----HHH
Confidence 34444 66666666655553 333 34445556888999999999997776544332 2222 247
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 004848 312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391 (727)
Q Consensus 312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 391 (727)
..+-.+|..++++++|..+|++++.. .|. -+.++.+-.+|.+.+.|.+-.+..-+..+..|+...
T Consensus 81 q~l~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y------ 145 (932)
T KOG2053|consen 81 QFLQNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY------ 145 (932)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc------
Confidence 77889999999999999999999988 677 677888888888888887655544333333333321
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH-----HHHHHHHH-HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004848 392 AADRRLMGLICETKGDHEAALE-----HLVLASMT-MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (727)
Q Consensus 392 a~~~~~l~~~~~~~g~~~~A~~-----~~~~al~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (727)
..|..+..+.......+.+.. +-++.... +...+.-...+.+. ..-.++..+|++++|.+.+..-+. ...
T Consensus 146 -yfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la--~~l 221 (932)
T KOG2053|consen 146 -YFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLA--EKL 221 (932)
T ss_pred -hHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHH--Hhc
Confidence 235555555555554444443 11222211 11122212222222 223466778999999998843322 221
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (727)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (727)
.+............+...+++.+-.++..+++..
T Consensus 222 ----~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 222 ----TSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred ----cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 2333334445566777788888887777777766
No 205
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.25 E-value=0.00023 Score=66.22 Aligned_cols=242 Identities=14% Similarity=0.133 Sum_probs=166.8
Q ss_pred hCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004848 321 LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL 400 (727)
Q Consensus 321 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~ 400 (727)
....++|+.-|++++++- |+....-..++-.+..+++.+++|++-...|.+.+............+ .+.+.+-.
T Consensus 40 e~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHH
Confidence 347899999999999983 222333456788888999999999999999999988765443222111 12222322
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh----hHHHH
Q 004848 401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP----AVASV 476 (727)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~ 476 (727)
.-....+.+--.++|+-.+..++...+.......-..+|.+|+..|+|.+-...+.+.-..++...|.++. ....+
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 22344455555666776676666666666666667789999999999999888888877777666555432 34455
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCc
Q 004848 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT-DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS 555 (727)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 555 (727)
|..-..+|..+.+-..-..+|++++.+-..+ ++|.+.-+.. .=|..+.+.|+|++|-.-|-+|.+-+........
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAI----PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRR 269 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAI----PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRR 269 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccC----CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcch
Confidence 6566778888888888888999999885442 3554433332 3356788899999999999888888776633333
Q ss_pred cHHHHHHHHHHHHHHcC
Q 004848 556 TVAGIEAQMGVMYYMLG 572 (727)
Q Consensus 556 ~~~~~~~~la~~~~~~g 572 (727)
....-|..+|..+.+.|
T Consensus 270 ttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 270 TTCLKYLVLANMLMKSG 286 (440)
T ss_pred hHHHHHHHHHHHHHHcC
Confidence 44445667788877765
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.25 E-value=8.3e-05 Score=65.19 Aligned_cols=150 Identities=19% Similarity=0.213 Sum_probs=111.2
Q ss_pred hcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 004848 529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL 608 (727)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 608 (727)
+.=+.+.+..-..+.+++.+.. .-.+.||..+...|++.+|...|++++.-. . ......+..++.
T Consensus 68 q~ldP~R~~Rea~~~~~~ApTv--------qnr~rLa~al~elGr~~EA~~hy~qalsG~---f----A~d~a~lLglA~ 132 (251)
T COG4700 68 QKLDPERHLREATEELAIAPTV--------QNRYRLANALAELGRYHEAVPHYQQALSGI---F----AHDAAMLLGLAQ 132 (251)
T ss_pred HhcChhHHHHHHHHHHhhchhH--------HHHHHHHHHHHHhhhhhhhHHHHHHHhccc---c----CCCHHHHHHHHH
Confidence 3334444444444455544433 345689999999999999999999998631 1 112467888999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004848 609 ACVQRYSINEAVELFEEARSILEQECGPYHPD--TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDE 686 (727)
Q Consensus 609 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~ 686 (727)
..+..+++..|...+++..+. +|. .......+|.+|..+|++.+|...|+.++..+ |. ..+
T Consensus 133 Aqfa~~~~A~a~~tLe~l~e~--------~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--------pg-~~a 195 (251)
T COG4700 133 AQFAIQEFAAAQQTLEDLMEY--------NPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY--------PG-PQA 195 (251)
T ss_pred HHHhhccHHHHHHHHHHHhhc--------CCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--------CC-HHH
Confidence 999999999999999988776 222 23366888999999999999999999999763 33 456
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHH
Q 004848 687 KRRLAELLKEAGRVRSRKAQSLETL 711 (727)
Q Consensus 687 ~~~La~~~~~~g~~~~A~~~~l~~a 711 (727)
....+..+.++|+.++|. ..+..+
T Consensus 196 r~~Y~e~La~qgr~~ea~-aq~~~v 219 (251)
T COG4700 196 RIYYAEMLAKQGRLREAN-AQYVAV 219 (251)
T ss_pred HHHHHHHHHHhcchhHHH-HHHHHH
Confidence 667799999999999888 554443
No 207
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.24 E-value=0.0004 Score=65.24 Aligned_cols=186 Identities=17% Similarity=0.160 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCC
Q 004848 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (727)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (727)
-+..++.-|......|+|++|+..|+.+... -+..|....+...++..+++.+++++|+..+++-+.++..
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~---- 103 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT---- 103 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC----
Confidence 3567788889999999999999999987754 1235566789999999999999999999999999999544
Q ss_pred CChHhHHHHHHHHHHHHHhc-----ccH---HHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004848 511 VPPEEIASGLTDVSSIYESM-----NEL---EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK 582 (727)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~-----g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 582 (727)
++....+++..|.++... .+. .+|+..|+..+..+|.. .. ...+. .=+..+.
T Consensus 104 --~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS---~Y-a~dA~--------------~~i~~~~ 163 (254)
T COG4105 104 --HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS---RY-APDAK--------------ARIVKLN 163 (254)
T ss_pred --CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC---cc-hhhHH--------------HHHHHHH
Confidence 566777788888776543 222 34455555555554433 11 00110 0011111
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHH
Q 004848 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI 662 (727)
Q Consensus 583 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 662 (727)
.. .+.--..+|..|.+.|.+..|+..++.+++.+.. .+....++..+..+|..+|-.++|.
T Consensus 164 d~--------------LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~-----t~~~~eaL~~l~eaY~~lgl~~~a~ 224 (254)
T COG4105 164 DA--------------LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD-----TSAVREALARLEEAYYALGLTDEAK 224 (254)
T ss_pred HH--------------HHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHhCChHHHH
Confidence 11 1223345688899999999999999988887433 4556678888889999999888886
Q ss_pred HH
Q 004848 663 EI 664 (727)
Q Consensus 663 ~~ 664 (727)
..
T Consensus 225 ~~ 226 (254)
T COG4105 225 KT 226 (254)
T ss_pred HH
Confidence 54
No 208
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.24 E-value=0.00019 Score=67.42 Aligned_cols=172 Identities=17% Similarity=0.138 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004848 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389 (727)
Q Consensus 310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 389 (727)
.|+.-|......|+|++|+..|+.+..... ..|....+...++.++++.+++++|+...++-+.++|...+.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p-----~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~--- 107 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHP-----FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA--- 107 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh---
Confidence 488899999999999999999999886632 246677899999999999999999999999999999877543
Q ss_pred HHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhCCCChh--------------HHHHHHHHHHHHHHcCCHHH
Q 004848 390 EEAADRRLMGLICETK-----GDHEAALEHLVLASMTMIANDQDAE--------------VASVDCSIGDTYLSLSRYDE 450 (727)
Q Consensus 390 ~~a~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~ 450 (727)
..+++..|.+++.. .|...+...+...-.++...++.+- .+.--..+|..|.+.|.+..
T Consensus 108 --dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 108 --DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred --hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 34577777776543 3444444444444344444443322 22233567899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHH
Q 004848 451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSY 496 (727)
Q Consensus 451 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 496 (727)
|+..++.+++.+.. .+....++..+..+|..+|-.++|...
T Consensus 186 A~nR~~~v~e~y~~-----t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 186 AINRFEEVLENYPD-----TSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 99999999987543 456678889999999999999998654
No 209
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.24 E-value=3e-05 Score=83.38 Aligned_cols=131 Identities=14% Similarity=0.054 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHH
Q 004848 310 GHMQLGDTYAMLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQ--------FSEAQKFCQMALD 378 (727)
Q Consensus 310 ~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~ 378 (727)
-++..|..|...+. +..|+.+|++|+++ +|+.+.++..++.+|..... ...+.....+++.
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 35666777766554 78999999999999 89999999998888765432 2333444444333
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848 379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (727)
Q Consensus 379 ~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (727)
+.... .. ..++..+|..+...|++++|...+++|+.+ .+. +.+|..+|.++...|++++|++.|++|
T Consensus 413 l~~~~---~~---~~~~~ala~~~~~~g~~~~A~~~l~rAl~L------~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 413 LPELN---VL---PRIYEILAVQALVKGKTDEAYQAINKAIDL------EMS-WLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred cccCc---CC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 31111 11 256888899999999999999999999864 243 578999999999999999999999999
Q ss_pred HHH
Q 004848 459 LTA 461 (727)
Q Consensus 459 l~~ 461 (727)
+.+
T Consensus 480 ~~L 482 (517)
T PRK10153 480 FNL 482 (517)
T ss_pred Hhc
Confidence 998
No 210
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.23 E-value=2.8e-05 Score=66.29 Aligned_cols=107 Identities=19% Similarity=0.197 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004848 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (727)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~ 679 (727)
...++.-|...++.|+|++|++.|+..... -|..+....+...|+.+|...|++++|+..+++.+++. |.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-----yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTR-----YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----PT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC
Confidence 467888899999999999999999987766 22245556789999999999999999999999999875 88
Q ss_pred ChhHHHHHHHHHHHHHHhCC---------------hhHHHHHHHHHHHHHhhh
Q 004848 680 NPDVDDEKRRLAELLKEAGR---------------VRSRKAQSLETLLDANSR 717 (727)
Q Consensus 680 ~p~~~~~~~~La~~~~~~g~---------------~~~A~~~~l~~al~~~p~ 717 (727)
||...-+++..|.++..+.. ...|. ..|+.++...|+
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~-~~f~~lv~~yP~ 131 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAF-RDFEQLVRRYPN 131 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHH-HHHHHHHHHCcC
Confidence 99999999999999999887 88999 999999999997
No 211
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.23 E-value=0.00023 Score=62.45 Aligned_cols=162 Identities=14% Similarity=0.075 Sum_probs=121.7
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004848 359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI 438 (727)
Q Consensus 359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 438 (727)
...+.-+.+....-..+.+++.|.. .-.+.||......|++.+|..+|++++. +.-......+..+
T Consensus 65 a~~q~ldP~R~~Rea~~~~~~ApTv---------qnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLgl 130 (251)
T COG4700 65 ALQQKLDPERHLREATEELAIAPTV---------QNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGL 130 (251)
T ss_pred HHHHhcChhHHHHHHHHHHhhchhH---------HHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHH
Confidence 3334445566666666666666554 3477899999999999999999999873 3444556778899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHH
Q 004848 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (727)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (727)
+...+..+++..|...+++..+.-. ....+.....+|..|...|++.+|...|+.++..+.. ..
T Consensus 131 A~Aqfa~~~~A~a~~tLe~l~e~~p------a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg----------~~ 194 (251)
T COG4700 131 AQAQFAIQEFAAAQQTLEDLMEYNP------AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG----------PQ 194 (251)
T ss_pred HHHHHhhccHHHHHHHHHHHhhcCC------ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC----------HH
Confidence 9999999999999999998887611 1123456677899999999999999999999998532 33
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004848 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (727)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (727)
.....+..+..+|+.++|..-+....+...+.
T Consensus 195 ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~ 226 (251)
T COG4700 195 ARIYYAEMLAKQGRLREANAQYVAVVDTAKRS 226 (251)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence 45567888899999999888777766655443
No 212
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.23 E-value=3.3e-07 Score=87.33 Aligned_cols=230 Identities=13% Similarity=0.080 Sum_probs=145.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChH
Q 004848 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514 (727)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 514 (727)
+-..|.-|+.+|.|++|+.+|.+++.. .|.++..+.+.|..|+++.+|..|...++.|+.+ +.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~ 162 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DK 162 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hH
Confidence 345788999999999999999999998 7888899999999999999999999999999999 55
Q ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004848 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594 (727)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 594 (727)
.+..+|...+.....+|...+|.+-++.++++.+... .|-..+.......++.-. .+...+.
T Consensus 163 ~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~-----------ELkK~~a~i~Sl~E~~I~-------~KsT~G~ 224 (536)
T KOG4648|consen 163 LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNI-----------ELKKSLARINSLRERKIA-------TKSTPGF 224 (536)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccH-----------HHHHHHHHhcchHhhhHH-------hhcCCCC
Confidence 6788999999999999999999999999999876541 122222222222211100 0111000
Q ss_pred ----CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848 595 ----KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (727)
Q Consensus 595 ----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (727)
.........-.-|..+...|.++.++.++-.-+.. ..+......+ +..|.+.-+++.|+.-.-+++.
T Consensus 225 ~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~--------~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~ 295 (536)
T KOG4648|consen 225 TPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRAT--------IDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTN 295 (536)
T ss_pred CccccchhhhccccCcchhhhhhhccccceeEeeccccc--------cCccccCccc-HHHHHHHhhcchhHHHHHHhcC
Confidence 00000111223355666777777777777655443 1111111122 5666777777777766655543
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 671 IREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 671 ~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
. +|........-+.+---.|...++. ..++.++.+.|-
T Consensus 296 ~--------~~s~~~~~s~~~~A~T~~~~~~E~K-~~~~T~~~~~P~ 333 (536)
T KOG4648|consen 296 P--------KPTPMPDTSGPPKAETIAKTSKEVK-PTKQTAVKVAPA 333 (536)
T ss_pred C--------CCCcCcccCCCchhHHHHhhhhhcC-cchhheeeeccc
Confidence 2 1111111122222223345556666 666666666654
No 213
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.19 E-value=2.8e-05 Score=79.78 Aligned_cols=120 Identities=15% Similarity=0.133 Sum_probs=102.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 004848 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD 435 (727)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 435 (727)
|-.++...++++.|+.++++.....|. +...++.++...++..+|+..+.+++. ..|.....+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe-----------v~~~LA~v~l~~~~E~~AI~ll~~aL~------~~p~d~~LL 237 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE-----------VAVLLARVYLLMNEEVEAIRLLNEALK------ENPQDSELL 237 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc-----------HHHHHHHHHHhcCcHHHHHHHHHHHHH------hCCCCHHHH
Confidence 344555678999999999997766532 356789999999999999999999984 344447888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004848 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA 500 (727)
Q Consensus 436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 500 (727)
...+..+...++++.|+.+.++++.+ .|....+|..|+.+|...|+++.|+..++.+
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 89999999999999999999999998 8999999999999999999999999777643
No 214
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.19 E-value=2.3e-05 Score=74.17 Aligned_cols=102 Identities=19% Similarity=0.235 Sum_probs=90.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 004848 561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD 640 (727)
Q Consensus 561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 640 (727)
+++.|.-++..|+|..|...|..-++.++. ....+.++++||.+++.+|+++.|...|..+++- -|.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-----s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN-----STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCC
Confidence 678888899999999999999998886432 4556789999999999999999999999999886 344788
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848 641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (727)
Q Consensus 641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (727)
..++++.||.+...+|+.++|...|+++++-+
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 88999999999999999999999999999864
No 215
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.18 E-value=5e-06 Score=62.94 Aligned_cols=67 Identities=31% Similarity=0.401 Sum_probs=57.6
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004848 610 CVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRR 689 (727)
Q Consensus 610 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~ 689 (727)
++..|++++|+.+|++++.. +|+...+++.+|.+|...|++++|...+++++.. +|+....+..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--------~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--------DPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--------GTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCHHHHHHH
Confidence 35789999999999999999 8999999999999999999999999999999965 5666666666
Q ss_pred HHH
Q 004848 690 LAE 692 (727)
Q Consensus 690 La~ 692 (727)
++.
T Consensus 65 ~a~ 67 (68)
T PF14559_consen 65 LAQ 67 (68)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.00053 Score=63.69 Aligned_cols=138 Identities=17% Similarity=0.175 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccH
Q 004848 562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT 641 (727)
Q Consensus 562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 641 (727)
+.+..++.-.|.|.-....+.+.++. +++........||.+.++.|+.+.|..+|+..-+......+ -...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~--~q~~ 251 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG--LQGK 251 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--cchh
Confidence 33444444455555555555444442 11122334444555555555555555555544433322222 1222
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
..+..+.+.+|.-.+++..|...|.+++.. +|.++.+..+-|.++.-.|+..+|+ +.++.++...|.
T Consensus 252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAi-K~~e~~~~~~P~ 318 (366)
T KOG2796|consen 252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDAL-KQLEAMVQQDPR 318 (366)
T ss_pred HHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHH-HHHHHHhccCCc
Confidence 334444455555555555555555555432 3444444445555555555555555 555555555554
No 217
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.13 E-value=0.00034 Score=65.13 Aligned_cols=243 Identities=15% Similarity=0.092 Sum_probs=161.0
Q ss_pred hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 004848 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY 442 (727)
Q Consensus 363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 442 (727)
..+.++|+.-|++++++.+..++ +-..++..+..+++++|+|++-++.|.+.+..++..-.....-...+.+-..-
T Consensus 40 e~~p~~Al~sF~kVlelEgEKge----WGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyi 115 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGE----WGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYI 115 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccch----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 34789999999999998765543 22457888999999999999999999988765543222111112223333333
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCCh----HhHHH
Q 004848 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP----EEIAS 518 (727)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~ 518 (727)
....+.+--..+|+..++..+... +......+...||.+|+..++|.+-.+.+.+....++..- |.++ .....
T Consensus 116 StS~~m~LLQ~FYeTTL~ALkdAK--NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed-GedD~kKGtQLLE 192 (440)
T KOG1464|consen 116 STSKNMDLLQEFYETTLDALKDAK--NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED-GEDDQKKGTQLLE 192 (440)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhh--cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc-Cchhhhccchhhh
Confidence 334445555566666666655443 2334445667899999999999998888888777766532 2221 22455
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchh
Q 004848 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF 598 (727)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 598 (727)
+|..-...|..+.+-.+-..+|++++.+....+ .+..+..+...=|..+.+.|+|++|..-|-+|..-+.+.+.....
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP-HPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRt- 270 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIP-HPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRT- 270 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC-chHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchh-
Confidence 666667788888888888889999998865542 222333334445778889999999999998888877766655432
Q ss_pred HHHHHHHHHHHHHHhC
Q 004848 599 FGVALNQMGLACVQRY 614 (727)
Q Consensus 599 ~~~~~~~la~~~~~~g 614 (727)
...-|..||..+.+.|
T Consensus 271 tCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 271 TCLKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 2334555666666554
No 218
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.13 E-value=0.0035 Score=62.47 Aligned_cols=257 Identities=12% Similarity=0.029 Sum_probs=146.3
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHhcccchh-----ccCccch
Q 004848 231 LISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG-QYNEAIPVLEQSIEIPVI-----EEGQEHA 304 (727)
Q Consensus 231 ~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~-----~~~~~~~ 304 (727)
.+..|+ ++.|..++.++-.... ......-...+..+++.|......+ ++++|..+++++.++... ...++..
T Consensus 3 A~~~~~-~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~ 80 (278)
T PF08631_consen 3 AWKQGD-LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS 80 (278)
T ss_pred chhhCC-HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence 356776 9999999999988764 2111112567788999999999999 999999999999998532 2233333
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 004848 305 LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384 (727)
Q Consensus 305 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 384 (727)
...+.++..++.+|...+.++...+ ...+++....- .|+.+..+..--.++...++.+.+.+.+.+++.-..-..
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e----~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e 155 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEK-ALNALRLLESE----YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE 155 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHh----CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc
Confidence 5677889999999999998764444 33334443332 234334443333334447888999888888877543111
Q ss_pred CCCCHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHH
Q 004848 385 SPASLEEAADRRLMGLIC--ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA--GFAYQKALT 460 (727)
Q Consensus 385 ~~~~~~~a~~~~~l~~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--~~~~~~al~ 460 (727)
.. +..+...+ ........|...+...+...-....+..........-......++.... ++.....+.
T Consensus 156 ~~--------~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~ 227 (278)
T PF08631_consen 156 SN--------FDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLS 227 (278)
T ss_pred ch--------HHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHH
Confidence 10 11111111 1122345566666555532222211111111111111111222222222 444444444
Q ss_pred HHHHhcC-CCChhH----HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848 461 AFKTNKG-ENHPAV----ASVFVRLADMYNRTGKLRESKSYCENALR 502 (727)
Q Consensus 461 ~~~~~~~-~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (727)
...+..+ +-.+.. ...+.+.|.-.++.++|++|..+|+-++.
T Consensus 228 ~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 228 IVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 3332221 222222 23455668889999999999999998763
No 219
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.13 E-value=0.0034 Score=62.58 Aligned_cols=254 Identities=14% Similarity=0.105 Sum_probs=143.4
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHh----cCCC--CCHH
Q 004848 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL-QFSEAQKFCQMALDIHKD----NGSP--ASLE 390 (727)
Q Consensus 318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~----~~~~--~~~~ 390 (727)
....|+++.|..++.++-..............+..+++.|......+ +++.|..++++++++... .... ....
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35789999999999999877542211112346778899999999999 999999999999999644 1111 1134
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004848 391 EAADRRLMGLICETKGDHEAALEHLVLASMTM-IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469 (727)
Q Consensus 391 ~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 469 (727)
...++..++.+|...+.++...+... ++... ...++++.. +...-.++...++.+.+.+.+.+++....-
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~-~l~~l~~e~~~~~~~---~~L~l~il~~~~~~~~~~~~L~~mi~~~~~----- 153 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALN-ALRLLESEYGNKPEV---FLLKLEILLKSFDEEEYEEILMRMIRSVDH----- 153 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHH-HHHHHHHhCCCCcHH---HHHHHHHHhccCChhHHHHHHHHHHHhccc-----
Confidence 56788999999999988765555332 23322 233343433 222223333378888888888888775210
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhc--ccHHHH--HHHHHHHHH
Q 004848 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM--NELEQA--IKLLQKALK 545 (727)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A--~~~~~~al~ 545 (727)
..............+.. .....|...+...+...-.. ..+. ...... +..++... ++.... ++.+...+.
T Consensus 154 ~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~--~~~~-~~e~~v--l~~~~~~~~~~~~~~~~~i~~l~~~~~ 227 (278)
T PF08631_consen 154 SESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKS--SEDQ-WLEKLV--LTRVLLTTQSKDLSSSEKIESLEELLS 227 (278)
T ss_pred ccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCC--ChhH-HHHHHH--HHHHHHHcCCccccchhHHHHHHHHHH
Confidence 01111111111111222 33456666666665543221 1111 121121 22222222 222222 333333343
Q ss_pred HHHhCCCCCc------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848 546 IYNDAPGQQS------TVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586 (727)
Q Consensus 546 ~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 586 (727)
......+.+. ....++.+.|..+++.++|++|..+|+-++.
T Consensus 228 ~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 228 IVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 3222222221 2234466779999999999999999997763
No 220
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.00014 Score=69.87 Aligned_cols=116 Identities=21% Similarity=0.184 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhc
Q 004848 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY---SINEAVELFEEARSILEQEC 634 (727)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~ 634 (727)
+.-|..||.+|..+|++..|...|.+|+++.. .....+..+|.++..+. ...++..+|++++..
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--------~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~----- 222 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLAG--------DNPEILLGLAEALYYQAGQQMTAKARALLRQALAL----- 222 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-----
Confidence 56788999999999999999999999999732 23567778887777554 467899999999999
Q ss_pred CCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004848 635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAEL 693 (727)
Q Consensus 635 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~ 693 (727)
+|....+++.||..++..|+|.+|...++..+.. +.++.|....+-..++..
T Consensus 223 ---D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~----lp~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 223 ---DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL----LPADDPRRSLIERSIARA 274 (287)
T ss_pred ---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----CCCCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999875 334555544444444443
No 221
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.0056 Score=59.30 Aligned_cols=301 Identities=13% Similarity=0.080 Sum_probs=190.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004848 399 GLICETKGDHEAALEHLVLASMTMIANDQDA----EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA 474 (727)
Q Consensus 399 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 474 (727)
+.......++++++..|...+.........+ ..-.....+|.+|...|++.+-..........+.... .+..+
T Consensus 11 ~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---Kakaa 87 (411)
T KOG1463|consen 11 AQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---KAKAA 87 (411)
T ss_pred HHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---hHHHH
Confidence 3344445566777777776654322222222 2234567899999999999988777777666655443 34444
Q ss_pred HHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCC
Q 004848 475 SVFVRLADMYNR-TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ 553 (727)
Q Consensus 475 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 553 (727)
.....|-..... -+..+.-+.++..+++...+. .........-..+..+|...++|.+|+.+....+.-.+.. ++
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e---kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl-DD 163 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE---KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL-DD 163 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc-cc
Confidence 444444444433 345667777888888776542 1111223344578899999999999999999988888776 55
Q ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004848 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633 (727)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (727)
...+..++..-...|+...+..+|...+..|-.......-+ |...+..-..-|.++....+|..|..||-+|.+-+...
T Consensus 164 K~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp-PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~ 242 (411)
T KOG1463|consen 164 KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP-PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL 242 (411)
T ss_pred ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC-HHHHHHHHHhccceeecccccchHHHHHHHHHcccccc
Confidence 55666677777889999999999999888887665544332 22233333444666777789999999999999877665
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--hCChhHHHHHHHHHH
Q 004848 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE--AGRVRSRKAQSLETL 711 (727)
Q Consensus 634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~--~g~~~~A~~~~l~~a 711 (727)
.. ++....++..+-.|-...+..++-...+..=..+. ......++....+..+.. +.+|+.|. ..|+.=
T Consensus 243 ~~--~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~------y~g~~i~AmkavAeA~~nRSLkdF~~AL-~~yk~e 313 (411)
T KOG1463|consen 243 DD--DVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK------YAGRDIDAMKAVAEAFGNRSLKDFEKAL-ADYKKE 313 (411)
T ss_pred CC--cHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh------ccCcchHHHHHHHHHhcCCcHHHHHHHH-HHhHHH
Confidence 43 34445555556666666777766555544322221 123345677777777654 34555565 555544
Q ss_pred HHHhh
Q 004848 712 LDANS 716 (727)
Q Consensus 712 l~~~p 716 (727)
+.-||
T Consensus 314 L~~D~ 318 (411)
T KOG1463|consen 314 LAEDP 318 (411)
T ss_pred HhcCh
Confidence 44443
No 222
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.09 E-value=6.6e-05 Score=64.06 Aligned_cols=105 Identities=15% Similarity=0.125 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004848 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (727)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (727)
...++.-|...+..|+|.+|++.|+.....+. .++....+...++.+|...+++++|+..+++-+++ .|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP-----~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYP-----FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 45677889999999999999999998776532 23445678899999999999999999999999998 666
Q ss_pred CccHHHHHHHHHHHHHHcCC---------------hHHHHHHHHHHHHHH
Q 004848 638 HPDTLGVYSNLAGTYDAIGR---------------LDDAIEILEFVVGIR 672 (727)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~ 672 (727)
||....+++..|.++..+.. ..+|...|++.+..+
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 88888899999999998876 778888888888764
No 223
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.00086 Score=62.37 Aligned_cols=227 Identities=15% Similarity=0.071 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHhcccchh----------ccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004848 264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVI----------EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTT 333 (727)
Q Consensus 264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 333 (727)
....|...-.++.++..+++|..-+...-.+... .++......-+.....-|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 3445555566677777788877766554443210 011111112233445567777888888888776665
Q ss_pred HHHHHHHHhC----CCC---------chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004848 334 GLEVQKQVLG----ETD---------PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL 400 (727)
Q Consensus 334 al~~~~~~~~----~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~ 400 (727)
.....+++.. ... .....+.+.++.++.-.+.|.-....+.+.++..+... ......+|.
T Consensus 148 L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~-------p~L~s~Lgr 220 (366)
T KOG2796|consen 148 LKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQE-------PQLLSGLGR 220 (366)
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCccc-------HHHHHHHHH
Confidence 5544333221 011 12334567778888889999999999999998553322 255788999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004848 401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL 480 (727)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 480 (727)
+..+.||.+.|..+|+...+.......-.....+..+.+.+|.-.++|..|...|.+++.. ++..+.+..+.
T Consensus 221 ~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnK 292 (366)
T KOG2796|consen 221 ISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNK 292 (366)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchH
Confidence 9999999999999999877655555555566677888899999999999999999999887 78888999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHh
Q 004848 481 ADMYNRTGKLRESKSYCENALRIYE 505 (727)
Q Consensus 481 a~~~~~~g~~~~A~~~~~~al~~~~ 505 (727)
|.|+...|+..+|++.++.++....
T Consensus 293 ALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 293 ALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999988843
No 224
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.07 E-value=1.9e-05 Score=60.64 Aligned_cols=58 Identities=26% Similarity=0.381 Sum_probs=54.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 606 MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 606 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
|..+|...+++++|++++++++.+ +|+....+..+|.++..+|++.+|+..|+++++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 356889999999999999999999 8999999999999999999999999999999976
No 225
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.05 E-value=1.1e-05 Score=77.18 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=90.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhH
Q 004848 604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDV 683 (727)
Q Consensus 604 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~ 683 (727)
-..|.-|+++|.|++|+.+|.+++.. +|.....+.+.|.+|+++..|..|..-...|+.+ +..+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y 164 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLY 164 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHH
Confidence 44688899999999999999999998 8888888999999999999999999999999988 5678
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 684 DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 684 ~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
..+|.+.+.+...+|+..+|. +.++.+|++.|+
T Consensus 165 ~KAYSRR~~AR~~Lg~~~EAK-kD~E~vL~LEP~ 197 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNMEAK-KDCETVLALEPK 197 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHH-HhHHHHHhhCcc
Confidence 899999999999999999999 999999999997
No 226
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.038 Score=61.23 Aligned_cols=251 Identities=14% Similarity=0.101 Sum_probs=125.3
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004848 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (727)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (727)
+....|-.+|.+..+.|. ..+|++.|-+|- + ...|.....+..+.|.|++-+.++..|.+..+.
T Consensus 1102 n~p~vWsqlakAQL~~~~-v~dAieSyikad---------D-----ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E- 1165 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGL-VKDAIESYIKAD---------D-----PSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE- 1165 (1666)
T ss_pred CChHHHHHHHHHHHhcCc-hHHHHHHHHhcC---------C-----cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-
Confidence 445678888888888886 888888887762 1 223566677778888888888888877655321
Q ss_pred cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004848 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD 378 (727)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 378 (727)
+.. -..|..+|.+.++..+-.++. .| |+.+. .-..|.-++..+.|+.|.-+|.-.-
T Consensus 1166 -----~~i----d~eLi~AyAkt~rl~elE~fi----------~g---pN~A~-i~~vGdrcf~~~~y~aAkl~y~~vS- 1221 (1666)
T KOG0985|consen 1166 -----PYI----DSELIFAYAKTNRLTELEEFI----------AG---PNVAN-IQQVGDRCFEEKMYEAAKLLYSNVS- 1221 (1666)
T ss_pred -----ccc----hHHHHHHHHHhchHHHHHHHh----------cC---CCchh-HHHHhHHHhhhhhhHHHHHHHHHhh-
Confidence 111 112333444444444322221 11 11111 1223333444444444433332211
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HHHhCCCC-hhHHHHHHHHH
Q 004848 379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM------------------TMIANDQD-AEVASVDCSIG 439 (727)
Q Consensus 379 ~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------~~~~~~~~-~~~~~~~~~la 439 (727)
-|..|+..+..+|+|+.|...-++|-. +....+.+ .-.+.-+-.+.
T Consensus 1222 ---------------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli 1286 (1666)
T KOG0985|consen 1222 ---------------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELI 1286 (1666)
T ss_pred ---------------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHH
Confidence 123333344444444444443333310 00001111 11233345566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH---HHhcCCCCCChHhH
Q 004848 440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR---IYEKPVPGVPPEEI 516 (727)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~ 516 (727)
..|...|-|++-+..++.++.+ .......+..||.+|.+- ++++-.++++-.-. +-+-. ..-+.
T Consensus 1287 ~~Yq~rGyFeElIsl~Ea~LGL--------ERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKvi----RA~eq 1353 (1666)
T KOG0985|consen 1287 EYYQDRGYFEELISLLEAGLGL--------ERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVI----RAAEQ 1353 (1666)
T ss_pred HHHHhcCcHHHHHHHHHhhhch--------hHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHH----HHHHH
Confidence 7788888888888888888776 344455666777777653 34444443322111 10000 00112
Q ss_pred HHHHHHHHHHHHhcccHHHHH
Q 004848 517 ASGLTDVSSIYESMNELEQAI 537 (727)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~ 537 (727)
+..|..+..+|..-..|+.|.
T Consensus 1354 ahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1354 AHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHHHHHHhhhhhhHHH
Confidence 445666666666666666553
No 227
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.0073 Score=57.00 Aligned_cols=232 Identities=13% Similarity=0.047 Sum_probs=156.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 004848 312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391 (727)
Q Consensus 312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 391 (727)
..+|+-....+++++|+..|.+.+...-..-...-...-.+...++.+|...|++..-.+..........+...+ ..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~---k~ 83 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP---KI 83 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch---hH
Confidence 446777778889999999998887651100000012344577899999999999887766666555555444322 11
Q ss_pred HHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004848 392 AADRRLMGL-ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470 (727)
Q Consensus 392 a~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 470 (727)
+.+...+-. .-.....++.-+..+...++..............-..+..+++..|.|.+|+......+.-+++.. +.
T Consensus 84 ~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D--DK 161 (421)
T COG5159 84 TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD--DK 161 (421)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc--Cc
Confidence 222222222 222345677777777777766655444444445567788899999999999999999988888775 46
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004848 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (727)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (727)
+....++..-..+|....+..++..-+..|.......+- ++...+..-..-|.+++...+|.-|..+|-++++-+...
T Consensus 162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC--Ppqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l 239 (421)
T COG5159 162 INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC--PPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLL 239 (421)
T ss_pred cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC--CHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccc
Confidence 777788888899999999999999888888777655431 122233333344666777889999999999998866543
No 228
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.018 Score=55.76 Aligned_cols=165 Identities=12% Similarity=-0.019 Sum_probs=130.6
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004848 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDC 436 (727)
Q Consensus 357 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 436 (727)
+.+....|++.+|.....+.++-+|... .++..--.+++..|+...-...+++.+.. -+.+.|-...+..
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDl--------la~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~G 179 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDL--------LAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHG 179 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhh--------hhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHH
Confidence 4456678899999999999998887653 34666677888899988888888776531 1345566677778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhH
Q 004848 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516 (727)
Q Consensus 437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 516 (727)
.++..+...|-|++|.+..++++++ ++....+...++.++...|++.++.++..+.-...+.. ....
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s-----~mla 246 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS-----WMLA 246 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh-----hHHH
Confidence 8899999999999999999999998 78888999999999999999999999988765554331 2233
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 004848 517 ASGLTDVSSIYESMNELEQAIKLLQKAL 544 (727)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (727)
..-|-..|.++...+.|+.|++.|.+-+
T Consensus 247 sHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 247 SHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 4456677888889999999999998644
No 229
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.99 E-value=0.021 Score=61.37 Aligned_cols=191 Identities=14% Similarity=0.054 Sum_probs=127.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH---HHHHHHHHHHH----HcCChHHHHHHHHHHHHHHhcCCCCCCh
Q 004848 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA---SVFVRLADMYN----RTGKLRESKSYCENALRIYEKPVPGVPP 513 (727)
Q Consensus 441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (727)
+.--.|+-+.++..+.++.+. ..+. .|... ..|+.....+. .....+.|...+......+
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~~-~~i~---~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--------- 263 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASKS-ENIR---SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--------- 263 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhcc-CCcc---hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---------
Confidence 333568999999999887652 1111 12111 11222211122 2345566777777777763
Q ss_pred HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004848 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (727)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (727)
|.-...+...|+++...|+.++|++.|++++...... ......+++.++.++..+.+|++|..+|.+..+.
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~---~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~------ 334 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW---KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE------ 334 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH---HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc------
Confidence 3446678889999999999999999999988533222 1222456889999999999999999999988874
Q ss_pred CCchhHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc
Q 004848 594 RKSAFFGVALNQMGLACVQRYSI-------NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI 655 (727)
Q Consensus 594 ~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 655 (727)
.....+...+..|.++...|+. ++|.++|.++-....+..+...|-..-+. ..+.-|...
T Consensus 335 -s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~-RK~~~~~~~ 401 (468)
T PF10300_consen 335 -SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVI-RKAQKYEKQ 401 (468)
T ss_pred -cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHH-HHHHHHHhc
Confidence 2233456677788999999998 89999999998888876665555444333 333334443
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.96 E-value=2.8e-05 Score=79.06 Aligned_cols=69 Identities=22% Similarity=0.152 Sum_probs=63.6
Q ss_pred CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHH---HHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 004848 637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVD---DEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (727)
Q Consensus 637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~---~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (727)
.+|+...+++++|.+|..+|++++|+..|++++++ +|+.. .+++++|.+|..+|++++|+ .+|++|++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dEAl-a~LrrALe 140 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKKAA-DCLRTALR 140 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Confidence 37888999999999999999999999999999987 46555 56999999999999999999 99999999
Q ss_pred H
Q 004848 714 A 714 (727)
Q Consensus 714 ~ 714 (727)
+
T Consensus 141 l 141 (453)
T PLN03098 141 D 141 (453)
T ss_pred h
Confidence 7
No 231
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.96 E-value=0.01 Score=61.84 Aligned_cols=266 Identities=11% Similarity=0.034 Sum_probs=150.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHH
Q 004848 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA-VASV 476 (727)
Q Consensus 398 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~ 476 (727)
.+.+..++|+++.-..+.... ....+ ...+..+......++++++..+++++.............. ....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~------~~~~~---~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~ 74 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQS------NEDSP---EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRA 74 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhc------cCCCh---hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 355677889998844443322 11111 3334445555688999999999998887654432111111 1112
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC---CC
Q 004848 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP---GQ 553 (727)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~ 553 (727)
+..+.. +....+.+++..+........ .....+...|...-. ....+ ....+..+.+..-.. ..
T Consensus 75 y~~l~~-lq~L~Elee~~~~~~~~~~~~------~~~~~l~~~W~~Rl~--~~~~~----~~~~~~il~~R~~~l~~~~~ 141 (352)
T PF02259_consen 75 YPSLVK-LQQLVELEEIIELKSNLSQNP------QDLKSLLKRWRSRLP--NMQDD----FSVWEPILSLRRLVLSLILL 141 (352)
T ss_pred HHHHHH-HhHHHHHHHHHHHHHhhcccH------HHHHHHHHHHHHHHH--Hhccc----hHHHHHHHHHHHHHHhcccc
Confidence 222211 112223333333331110000 000011111111110 11122 222222222222111 22
Q ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHH
Q 004848 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS-ILEQ 632 (727)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~ 632 (727)
....+..+..++.+..+.|+++.|...+.++.......... ...+....+.+....|+..+|+..++..+. ....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~----~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~ 217 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL----LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSK 217 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC----CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 34556788999999999999999999999877643221111 235666778999999999999999998887 3332
Q ss_pred hc-------------------------CCCCccHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHHHHhcCCCCh
Q 004848 633 EC-------------------------GPYHPDTLGVYSNLAGTYDAI------GRLDDAIEILEFVVGIREEKLGTANP 681 (727)
Q Consensus 633 ~~-------------------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~g~~~p 681 (727)
.. .......+.++..+|...... +..+++...|.+++.+ +|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~ 289 (352)
T PF02259_consen 218 NIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------DP 289 (352)
T ss_pred ccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------Ch
Confidence 20 111233456778888888888 8899999999999987 57
Q ss_pred hHHHHHHHHHHHHHHh
Q 004848 682 DVDDEKRRLAELLKEA 697 (727)
Q Consensus 682 ~~~~~~~~La~~~~~~ 697 (727)
....+++.+|..+...
T Consensus 290 ~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 290 SWEKAWHSWALFNDKL 305 (352)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 7788888888887654
No 232
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=0.024 Score=68.73 Aligned_cols=410 Identities=11% Similarity=0.053 Sum_probs=206.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchH
Q 004848 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL 305 (727)
Q Consensus 226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 305 (727)
.+|.+-++.+. |..|+-++++- . ....+.......+..+-.+|...++++........-....
T Consensus 1388 tLa~aSfrc~~-y~RalmylEs~-~-----~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---------- 1450 (2382)
T KOG0890|consen 1388 TLARASFRCKA-YARALMYLESH-R-----STEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---------- 1450 (2382)
T ss_pred HHHHHHHhhHH-HHHHHHHHHHh-c-----cccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc----------
Confidence 67777888886 88888887774 0 0011112223334555558999999998777776411110
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004848 306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (727)
Q Consensus 306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (727)
.+...-......|++..|..+|++++.. +|.....+...-...+..|.+...+...+-.......
T Consensus 1451 ----sl~~qil~~e~~g~~~da~~Cye~~~q~--------~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se--- 1515 (2382)
T KOG0890|consen 1451 ----SLYQQILEHEASGNWADAAACYERLIQK--------DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSE--- 1515 (2382)
T ss_pred ----cHHHHHHHHHhhccHHHHHHHHHHhhcC--------CCccccchhhHHHhhhcccchhHHHhhhcchhhccCH---
Confidence 1444556677889999999999999887 4554444444444444455555555433322211110
Q ss_pred CCCHHHHHHHHHH-HHHHHHcCCHHHHHHHHH-----------HHHHHHHhCCCChhHHHHHHHHHHH----------HH
Q 004848 386 PASLEEAADRRLM-GLICETKGDHEAALEHLV-----------LASMTMIANDQDAEVASVDCSIGDT----------YL 443 (727)
Q Consensus 386 ~~~~~~a~~~~~l-~~~~~~~g~~~~A~~~~~-----------~al~~~~~~~~~~~~~~~~~~la~~----------~~ 443 (727)
+. .-++.+ -.+.++.++++.-..+.. .+.........+. ...+..+... ..
T Consensus 1516 ----~~-~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~--~~~~~~i~~~r~~~i~~lsa~s 1588 (2382)
T KOG0890|consen 1516 ----EV-DELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDE--IATLDLIENSRELVIENLSACS 1588 (2382)
T ss_pred ----HH-HHHHHHHHHHHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhcccch--hhHHHHHHHHHHHhhhhHHHhh
Confidence 00 111111 122244555554444321 0000000000111 0010011100 01
Q ss_pred HcCCHHHHHHHHHHHHHHHHH------h----cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCCh
Q 004848 444 SLSRYDEAGFAYQKALTAFKT------N----KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513 (727)
Q Consensus 444 ~~g~~~~A~~~~~~al~~~~~------~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (727)
..|-|..+.++.-+...+.+- . .+++......-|.+....-....+..+-+-.+++++-..... ..-.
T Consensus 1589 ~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~--~~~~ 1666 (2382)
T KOG0890|consen 1589 IEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMR--SNLK 1666 (2382)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhcc--cccc
Confidence 111233333333222221110 0 011111111122222221111222334444445544333221 1335
Q ss_pred HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-C
Q 004848 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI-G 592 (727)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~ 592 (727)
...+.+|...|++....|+++.|..++-.|.+.. ...++...|..++..|+...|+..+++.+.....- .
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~ 1737 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR---------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLH 1737 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccccc
Confidence 5678999999999999999999999888877653 23577889999999999999999999999765432 1
Q ss_pred CC--------CchhHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH----------
Q 004848 593 ER--------KSAFFGVALNQMGLACVQRYSI--NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY---------- 652 (727)
Q Consensus 593 ~~--------~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~---------- 652 (727)
.. +......+...++......+++ ..-+++|..+.++ +|..-..++.+|..|
T Consensus 1738 ~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai--------l~ewe~~hy~l~~yy~kll~~~~~~ 1809 (2382)
T KOG0890|consen 1738 TPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI--------LPEWEDKHYHLGKYYDKLLEDYKSN 1809 (2382)
T ss_pred CCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--------cccccCceeeHHHHHHHHhhhhhcc
Confidence 11 1111223444455555555553 4556778888887 554444555565433
Q ss_pred --HHcCChHH---HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004848 653 --DAIGRLDD---AIEILEFVVGIREEKLGTANPDVDDEKRRLAEL 693 (727)
Q Consensus 653 --~~~g~~~~---A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~ 693 (727)
.+.|++.. |+..|.+++..-.+.+-..-|.....|..+|..
T Consensus 1810 ~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~ 1855 (2382)
T KOG0890|consen 1810 KMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTH 1855 (2382)
T ss_pred cccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcch
Confidence 23455555 555555665432222222234444445444433
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.94 E-value=3.5e-05 Score=78.38 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=62.4
Q ss_pred chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHH---HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG---VYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
.+..+..++++|.+|...|+|++|+..|++|+++ +|+... +|+++|.+|..+|++++|+.+|++|+++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456789999999999999999999999999999 777764 5999999999999999999999999986
No 234
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.93 E-value=3e-05 Score=59.61 Aligned_cols=61 Identities=25% Similarity=0.319 Sum_probs=57.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 648 LAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 648 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
|..+|...+++++|+.++++++.+ +|+....+..+|.++...|++.+|. ..|+++++..|+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~-~~l~~~l~~~p~ 61 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEAL-EDLERALELSPD 61 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHH-HHHHHHHHHCCC
Confidence 457899999999999999999987 7889999999999999999999999 999999999997
No 235
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.85 E-value=5e-05 Score=57.34 Aligned_cols=53 Identities=30% Similarity=0.374 Sum_probs=49.1
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (727)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (727)
+..|++++|+..|++++.. .|....++..+|.+|...|++++|...+++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999998 8999999999999999999999999999998887
No 236
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.034 Score=53.97 Aligned_cols=219 Identities=14% Similarity=0.012 Sum_probs=149.9
Q ss_pred cccCCCCCChHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 004848 211 SEAGLDKPGLGPLL-LKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLE 289 (727)
Q Consensus 211 ~~~~~~~p~~~~~l-~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 289 (727)
..+...+|+...+. +.+|......+.+.+.|.. +++|+.-..+.+.. ..-+..-+.+.+..|++.+|...++
T Consensus 55 ~kL~ssDP~~Vmart~a~gl~~iaa~s~v~~ak~-~dqav~dav~y~~a------rEk~h~~aai~~~~g~~h~a~~~wd 127 (491)
T KOG2610|consen 55 EKLSSSDPEAVMARTFALGLVLIAAASNVEFAKK-MDQAVIDAVKYGNA------REKRHAKAAILWGRGKHHEAAIEWD 127 (491)
T ss_pred HHHhcCChHHHHHHHHHHhhhhhhccchhhHHHH-HHHHHHHHHHHhhh------HHhhhhhHHHhhccccccHHHHHHH
Confidence 44556677644433 4455555566664444433 45554444333221 1224445667788999999999999
Q ss_pred HhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHH
Q 004848 290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA 369 (727)
Q Consensus 290 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 369 (727)
+.++-. | ..+-++..--.+++.+|+...-...+++.+... ..+-|-...+.-.++..+...|-|++|
T Consensus 128 klL~d~-----P----tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 128 KLLDDY-----P----TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred HHHHhC-----c----hhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 998765 2 223345566678888999988888888877652 223455677777888899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHH
Q 004848 370 QKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD 449 (727)
Q Consensus 370 ~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 449 (727)
.+...+++++++.. ..+....+.++...|++.++.++..+.....+. .......-|...|.++...+.|+
T Consensus 195 Ek~A~ralqiN~~D--------~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~--s~mlasHNyWH~Al~~iE~aeye 264 (491)
T KOG2610|consen 195 EKQADRALQINRFD--------CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ--SWMLASHNYWHTALFHIEGAEYE 264 (491)
T ss_pred HHHHHhhccCCCcc--------hHHHHHHHHHHHhcchhhhHHHHHHhcccchhh--hhHHHhhhhHHHHHhhhcccchh
Confidence 99999999998655 356778889999999999999987765322210 11223445667888999999999
Q ss_pred HHHHHHHHHH
Q 004848 450 EAGFAYQKAL 459 (727)
Q Consensus 450 ~A~~~~~~al 459 (727)
.|++.|.+-+
T Consensus 265 ~aleIyD~ei 274 (491)
T KOG2610|consen 265 KALEIYDREI 274 (491)
T ss_pred HHHHHHHHHH
Confidence 9999998643
No 237
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.81 E-value=4.1e-05 Score=51.26 Aligned_cols=41 Identities=44% Similarity=0.707 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh
Q 004848 642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682 (727)
Q Consensus 642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~ 682 (727)
+.++.+||.+|..+|++++|+.++++++.+.++++|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 45789999999999999999999999999999999999985
No 238
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.76 E-value=0.073 Score=55.43 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc
Q 004848 598 FFGVALNQMGLACVQR------YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI 655 (727)
Q Consensus 598 ~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 655 (727)
..+.++..+|...... +..++++..|.+++.+ +|....+++.+|..+...
T Consensus 250 ~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 250 LKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------DPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------ChhHHHHHHHHHHHHHHH
Confidence 4567778888887777 8899999999999999 888888999998887654
No 239
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.75 E-value=0.12 Score=57.13 Aligned_cols=222 Identities=19% Similarity=0.112 Sum_probs=128.7
Q ss_pred ccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCh
Q 004848 202 GKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQY 281 (727)
Q Consensus 202 ~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 281 (727)
++-.|......+...+|+..-+....|..+++.|+ +++|..+++ ++.. ..++ .-..+..+-.+|..++++
T Consensus 24 qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk-~~ea~~~Le-~~~~------~~~~--D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGK-GDEALKLLE-ALYG------LKGT--DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcC-chhHHHHHh-hhcc------CCCC--chHHHHHHHHHHHHHhhh
Confidence 33344455666778899999999999999999998 888884443 3332 1121 244577788999999999
Q ss_pred hHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH-HHHHH
Q 004848 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY-LAEAH 360 (727)
Q Consensus 282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-la~~~ 360 (727)
++|..+|++++... +. . ..++.+=.+|.+.+.|.+-.+. ++++++. -|..+..+.. +..+.
T Consensus 94 d~~~~~Ye~~~~~~-----P~-e----ell~~lFmayvR~~~yk~qQka---a~~LyK~-----~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 94 DEAVHLYERANQKY-----PS-E----ELLYHLFMAYVREKSYKKQQKA---ALQLYKN-----FPKRAYYFWSVISLIL 155 (932)
T ss_pred hHHHHHHHHHHhhC-----Cc-H----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHh-----CCcccchHHHHHHHHH
Confidence 99999999999876 22 1 1245555666776666544333 3333332 2333222222 22222
Q ss_pred HHhcCHH---------HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH
Q 004848 361 VQALQFS---------EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV 431 (727)
Q Consensus 361 ~~~g~~~---------~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 431 (727)
......+ -|...+++.++.. +....... ....-.+...+|++++|.+.+..-+. . ...+..
T Consensus 156 qs~~~~~~~~~~i~l~LA~~m~~~~l~~~---gk~~s~aE---~~Lyl~iL~~~~k~~eal~~l~~~la--~--~l~~~~ 225 (932)
T KOG2053|consen 156 QSIFSENELLDPILLALAEKMVQKLLEKK---GKIESEAE---IILYLLILELQGKYQEALEFLAITLA--E--KLTSAN 225 (932)
T ss_pred HhccCCcccccchhHHHHHHHHHHHhccC---CccchHHH---HHHHHHHHHhcccHHHHHHHHHHHHH--H--hccccc
Confidence 2222222 2344444444332 11111111 22334566778999999998853321 1 112222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (727)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (727)
..........+...++|.+-.+...+++..
T Consensus 226 ~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 226 LYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred hHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 233344566777788888877777777665
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.71 E-value=0.0029 Score=64.87 Aligned_cols=188 Identities=16% Similarity=0.203 Sum_probs=121.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHH
Q 004848 481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGI 560 (727)
Q Consensus 481 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 560 (727)
..-..+..+...-++...+|+++ .++.+.+|..||.- ...-..+|..+|+++++..+...+...
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei---------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~----- 238 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEI---------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQ----- 238 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh---------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhh-----
Confidence 33445567778888888999998 45556666666542 233467899999999988766543211
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCc-
Q 004848 561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP- 639 (727)
Q Consensus 561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~- 639 (727)
.....|.+-++. . ..+......+-..+|.+..+.|+.++|++.|+..++. .|
T Consensus 239 ------~~~~~g~~~e~~--~-----------~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke--------~p~ 291 (539)
T PF04184_consen 239 ------FLQHHGHFWEAW--H-----------RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKE--------FPN 291 (539)
T ss_pred ------hhhcccchhhhh--h-----------ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhh--------CCc
Confidence 111112111110 0 0011123456677899999999999999999998876 33
Q ss_pred -cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-hCC---------------hhH
Q 004848 640 -DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE-AGR---------------VRS 702 (727)
Q Consensus 640 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~-~g~---------------~~~ 702 (727)
+...++.+|..++..++.|.++...+.+.-++ .-|..+...+.-|.+..+ .|+ ...
T Consensus 292 ~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-------~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~ 364 (539)
T PF04184_consen 292 LDNLNIRENLIEALLELQAYADVQALLAKYDDI-------SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMN 364 (539)
T ss_pred cchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-------cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHH
Confidence 35668999999999999999999888876432 135556555555554332 222 124
Q ss_pred HHHHHHHHHHHHhhhcC
Q 004848 703 RKAQSLETLLDANSRVN 719 (727)
Q Consensus 703 A~~~~l~~al~~~p~~~ 719 (727)
|+ +.+.+|++.||.+.
T Consensus 365 av-eAi~RAvefNPHVp 380 (539)
T PF04184_consen 365 AV-EAIHRAVEFNPHVP 380 (539)
T ss_pred HH-HHHHHHHHhCCCCc
Confidence 66 78899999999844
No 241
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.68 E-value=0.016 Score=60.18 Aligned_cols=112 Identities=22% Similarity=0.272 Sum_probs=83.7
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 004848 209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVL 288 (727)
Q Consensus 209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 288 (727)
...+....+|..+..+..-+..|-..|+ ..+|+.|+..|+-..... ..-.++..+|.++.+.|...+|--++
T Consensus 201 ~~~~glq~~~~sw~lH~~as~YWR~~G~-~~~A~~Ca~~a~hf~~~h-------~kdi~lLSlaTiL~RaG~sadA~iIL 272 (886)
T KOG4507|consen 201 LIHEGLQKNTSSWVLHNMASFYWRIKGE-PYQAVECAMRALHFSSRH-------NKDIALLSLATVLHRAGFSADAAVIL 272 (886)
T ss_pred HHHHhhhcCchhHHHHHHHHHHHHHcCC-hhhhhHHHHHHhhhCCcc-------cccchhhhHHHHHHHcccccchhhee
Confidence 3445556677777776666666666775 999999999998764322 12235777999999999999999988
Q ss_pred HHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848 289 EQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (727)
Q Consensus 289 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 337 (727)
..|+.-.....+ -++.++.++.+++.+...+.+|..+.+.
T Consensus 273 hAA~~dA~~~t~---------n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 273 HAALDDADFFTS---------NYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred ehhccCCccccc---------cceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 877765422222 2678999999999999999999988776
No 242
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.67 E-value=0.086 Score=53.54 Aligned_cols=143 Identities=10% Similarity=0.015 Sum_probs=86.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchH-HHHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC
Q 004848 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL-AKFAGHMQ-LGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345 (727)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 345 (727)
+...|.++..++++.+|...|.+..+... ..+. ..-.++.+ +-++| -+.+ +...+..+...++.
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~-----~~~f~lkeEvl~grilnAf-fl~n----ld~Me~~l~~l~~~---- 74 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKE-----SSPFLLKEEVLGGRILNAF-FLNN----LDLMEKQLMELRQQ---- 74 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhh-----cchHHHHHHHHhhHHHHHH-HHhh----HHHHHHHHHHHHHh----
Confidence 44568889999999999999999876531 1111 11112222 22232 2333 34444444444443
Q ss_pred CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC---CHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA---SLE----EAADRRLMGLICETKGDHEAALEHLVLA 418 (727)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~----~a~~~~~l~~~~~~~g~~~~A~~~~~~a 418 (727)
.|.........|...++.++|.+|++.+............+- ... ....-...+.++...|.+.++...+++.
T Consensus 75 ~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i 154 (549)
T PF07079_consen 75 FGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI 154 (549)
T ss_pred cCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 345556677788889999999999988766554432222110 000 0111234577889999999999999988
Q ss_pred HHHHHh
Q 004848 419 SMTMIA 424 (727)
Q Consensus 419 l~~~~~ 424 (727)
+..+-.
T Consensus 155 ~~~llk 160 (549)
T PF07079_consen 155 IERLLK 160 (549)
T ss_pred HHHHhh
Confidence 755443
No 243
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00054 Score=62.92 Aligned_cols=108 Identities=16% Similarity=0.051 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC---CCccH-------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGP---YHPDT-------LGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (727)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (727)
.++..-|.-++..|+|.+|...|..|+...+.+.-. ..|.. ...+.+.+.|+...|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 466777888999999999999999999887775432 23332 23678999999999999999999999886
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 671 IREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 671 ~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
. +|.+..+++..|.+....=+..+|. ..|.++|+++|.
T Consensus 259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~-~D~~~vL~ldps 296 (329)
T KOG0545|consen 259 H--------HPGNVKAYFRRAKAHAAVWNEAEAK-ADLQKVLELDPS 296 (329)
T ss_pred c--------CCchHHHHHHHHHHHHhhcCHHHHH-HHHHHHHhcChh
Confidence 5 8999999999999999999999999 999999999997
No 244
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.66 E-value=0.032 Score=61.41 Aligned_cols=279 Identities=15% Similarity=0.079 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHH---HHhcCCCCCHHHHHHH
Q 004848 324 LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA-----LQFSEAQKFCQMALDI---HKDNGSPASLEEAADR 395 (727)
Q Consensus 324 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~---~~~~~~~~~~~~a~~~ 395 (727)
...|..+|+.+... ....+...+|.+|..- .+.+.|+.+|+.+... ...... ..+.
T Consensus 228 ~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~------~~a~ 291 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL------PPAQ 291 (552)
T ss_pred hhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC------Cccc
Confidence 56788888877666 3556777777777654 5899999999999872 111111 1347
Q ss_pred HHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcC
Q 004848 396 RLMGLICETKG-----DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS---RYDEAGFAYQKALTAFKTNKG 467 (727)
Q Consensus 396 ~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~ 467 (727)
+.+|.+|.... ++..|+.+|.++.. .....+.+.+|.++..-. ++..|..+|..|...
T Consensus 292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~--------~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------ 357 (552)
T KOG1550|consen 292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAE--------LGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------ 357 (552)
T ss_pred cHHHHHHhcCCCCccccHHHHHHHHHHHHh--------cCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------
Confidence 78999998753 77889999988853 223356678888887755 578999999988764
Q ss_pred CCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhc-ccHHHHHHHHHH
Q 004848 468 ENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM-NELEQAIKLLQK 542 (727)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~ 542 (727)
....+.+.++.+|.. .-+...|..++.++.+.- + +.+...++.++..- ++++.+...+..
T Consensus 358 ----G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--------~---~~A~~~~~~~~~~g~~~~~~~~~~~~~ 422 (552)
T KOG1550|consen 358 ----GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--------N---PSAAYLLGAFYEYGVGRYDTALALYLY 422 (552)
T ss_pred ----CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--------C---hhhHHHHHHHHHHccccccHHHHHHHH
Confidence 345778888888875 357889999999998872 1 22233334333322 677766666555
Q ss_pred HHHHHHhCCCCCccHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHh----C
Q 004848 543 ALKIYNDAPGQQSTVAGIEAQMGVMYYML----GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR----Y 614 (727)
Q Consensus 543 al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g 614 (727)
.....-.... ..+..+.......... .+...+...+.++... ....+...+|.+|..- .
T Consensus 423 ~a~~g~~~~q---~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~a~~~lgd~y~~g~g~~~ 489 (552)
T KOG1550|consen 423 LAELGYEVAQ---SNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ----------GNADAILKLGDYYYYGLGTGR 489 (552)
T ss_pred HHHhhhhHHh---hHHHHHHHhccccccccccccchhHHHHHHHHHHhc----------cCHHHHhhhcceeeecCCCCC
Confidence 4444322210 0011111111111111 1344455555554432 1346777888887754 3
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc---CChHHHHHHHHHHHHH
Q 004848 615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI---GRLDDAIEILEFVVGI 671 (727)
Q Consensus 615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~ 671 (727)
+++.|...|..|... . ....+++|.++..- ..+..|..+|.++...
T Consensus 490 d~~~a~~~y~~a~~~--------~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQ--------G---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred ChHHHHHHHHHHHHh--------h---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 699999999999876 3 77899999998752 1268888888888753
No 245
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.65 E-value=0.12 Score=63.16 Aligned_cols=371 Identities=12% Similarity=0.045 Sum_probs=191.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHhcccchhccCccch-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCch
Q 004848 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA-LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR 348 (727)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 348 (727)
.+|.+-++.+.|..|+-++++- .. .+.. ...-..+..+-.+|...++++.-......-.. +|.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~------~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---------~~s 1451 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RS------TEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---------DPS 1451 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-cc------ccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---------Ccc
Confidence 6788889999999999999985 11 1111 11222345555689999998876665543111 122
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 004848 349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD 428 (727)
Q Consensus 349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 428 (727)
+...-..+...|++..|..+|++++...+..... +..+-......|.+...+.+.+-... ..
T Consensus 1452 ----l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~--------~~g~l~sml~~~~l~t~i~~~dg~~~------~~ 1513 (2382)
T KOG0890|consen 1452 ----LYQQILEHEASGNWADAAACYERLIQKDPDKEKH--------HSGVLKSMLAIQHLSTEILHLDGLII------NR 1513 (2382)
T ss_pred ----HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccc--------hhhHHHhhhcccchhHHHhhhcchhh------cc
Confidence 2334445667899999999999999887764321 33333344455556555554332211 11
Q ss_pred hhHHHHHHHHH-HHHHHcCCHHHHHHHHH-------HHHHHHHHhcCCCChhHHHHHHHHHHHH----------HHcCCh
Q 004848 429 AEVASVDCSIG-DTYLSLSRYDEAGFAYQ-------KALTAFKTNKGENHPAVASVFVRLADMY----------NRTGKL 490 (727)
Q Consensus 429 ~~~~~~~~~la-~~~~~~g~~~~A~~~~~-------~al~~~~~~~~~~~~~~~~~~~~la~~~----------~~~g~~ 490 (727)
.+...-++.++ .+-...++++.-..+.. .+..+..........+....+..+.... ...|-|
T Consensus 1514 se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy 1593 (2382)
T KOG0890|consen 1514 SEEVDELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSY 1593 (2382)
T ss_pred CHHHHHHHHHHHHHHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchH
Confidence 11111222221 22244455544443321 0000000000000001111111111110 011122
Q ss_pred HHHHHHHHHHHHH---------HhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHH
Q 004848 491 RESKSYCENALRI---------YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIE 561 (727)
Q Consensus 491 ~~A~~~~~~al~~---------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 561 (727)
..+.++.-+...+ ..+.-++.+......-|.+....-....+..+-+-.+++++-.....++....++.+|
T Consensus 1594 ~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~w 1673 (2382)
T KOG0890|consen 1594 VRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECW 1673 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHH
Confidence 2333322222111 1111111111111111222211111122244445555665555444445566889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc-CC--CC
Q 004848 562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC-GP--YH 638 (727)
Q Consensus 562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~--~~ 638 (727)
...|.+....|+++.|..++-.|.+.. .+.++...|..++..|+-..|+..+++.+....... ++ +.
T Consensus 1674 LqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1674 LQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred HHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 999999999999999999988887641 356888899999999999999999999997644321 11 01
Q ss_pred cc------HHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004848 639 PD------TLGVYSNLAGTYDAIGRL--DDAIEILEFVVGIREEKLGTANPDVDDEKRRLAE 692 (727)
Q Consensus 639 ~~------~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~ 692 (727)
|. ...+...++......|++ ++-+.+|+.+.++ +|...+.++.||.
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai--------l~ewe~~hy~l~~ 1797 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI--------LPEWEDKHYHLGK 1797 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--------cccccCceeeHHH
Confidence 11 122445555666666664 3456677777766 3444444555553
No 246
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.65 E-value=0.0021 Score=65.82 Aligned_cols=133 Identities=15% Similarity=0.100 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccc--
Q 004848 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH-- 303 (727)
Q Consensus 226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-- 303 (727)
......++.. ++++-+++..+|+++. |+.+.+|..||.-. ..-..+|..+|+++++..+...+...
T Consensus 173 ~IMq~AWRER-np~aRIkaA~eALei~---------pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~ 240 (539)
T PF04184_consen 173 EIMQKAWRER-NPQARIKAAKEALEIN---------PDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFL 240 (539)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhh---------hhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 3444455555 4999999999999986 44477777666532 23467888888888876543333211
Q ss_pred --------------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHH
Q 004848 304 --------------ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA 369 (727)
Q Consensus 304 --------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 369 (727)
....+.+-..+|.|..++|+.++|++.|+..++... ..+...++.+|..++...+.|.++
T Consensus 241 ~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~ 314 (539)
T PF04184_consen 241 QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADV 314 (539)
T ss_pred hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHH
Confidence 111234567899999999999999999999988731 123567899999999999999999
Q ss_pred HHHHHHH
Q 004848 370 QKFCQMA 376 (727)
Q Consensus 370 ~~~~~~a 376 (727)
..++.+.
T Consensus 315 q~lL~kY 321 (539)
T PF04184_consen 315 QALLAKY 321 (539)
T ss_pred HHHHHHh
Confidence 9888774
No 247
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.60 E-value=0.034 Score=56.43 Aligned_cols=207 Identities=11% Similarity=0.048 Sum_probs=125.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHH
Q 004848 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS 524 (727)
Q Consensus 445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la 524 (727)
...+..+...+.+.+...+...+...-....+..++-..|....+|+.-+.+.+..-.+- ..+......+....|
T Consensus 112 re~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p-----~~~~~~~~~i~~~ya 186 (374)
T PF13281_consen 112 RERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALP-----TCDVANQHNIKFQYA 186 (374)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccC-----ccchhcchHHHHHHH
Confidence 334444555556666655555543233345666777888999999998888877665541 111233345566778
Q ss_pred HHHHh---cccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhC
Q 004848 525 SIYES---MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML---------GNYSDSYDSFKNAISKLRAIG 592 (727)
Q Consensus 525 ~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~ 592 (727)
.++.+ .|+.++|+..+..++..... ....++..+|.+|... ...++|+..|.++.++-
T Consensus 187 fALnRrn~~gdre~Al~il~~~l~~~~~------~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~---- 256 (374)
T PF13281_consen 187 FALNRRNKPGDREKALQILLPVLESDEN------PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE---- 256 (374)
T ss_pred HHHhhcccCCCHHHHHHHHHHHHhccCC------CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC----
Confidence 88888 89999999999887554322 1245667777777543 23566666666666542
Q ss_pred CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HH---HHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004848 593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR-SI---LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV 668 (727)
Q Consensus 593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~---~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 668 (727)
+. ...=.+++.++...|...+...-+++.. .+ ..+....+.-...+.+..++.+..-.|++++|..+++++
T Consensus 257 ---~~--~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~ 331 (374)
T PF13281_consen 257 ---PD--YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKA 331 (374)
T ss_pred ---cc--ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 1233455666666665444333333333 11 111111122334456677888889999999999999999
Q ss_pred HHH
Q 004848 669 VGI 671 (727)
Q Consensus 669 l~~ 671 (727)
+.+
T Consensus 332 ~~l 334 (374)
T PF13281_consen 332 FKL 334 (374)
T ss_pred hhc
Confidence 976
No 248
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00045 Score=63.34 Aligned_cols=100 Identities=22% Similarity=0.305 Sum_probs=90.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChH
Q 004848 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514 (727)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 514 (727)
+..-|..++...+|+.|+..|.+++.+ +|..+..|.+.+.+|++..+++.+..-..+++++ .+
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql---------~~ 75 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL---------DP 75 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc---------Ch
Confidence 344567778888999999999999998 8999999999999999999999999999999999 66
Q ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC
Q 004848 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (727)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (727)
..+..++.+|........|++|+..+++|..+....+
T Consensus 76 N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 76 NLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 7789999999999999999999999999999887653
No 249
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0029 Score=58.28 Aligned_cols=105 Identities=20% Similarity=0.240 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCch----------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004848 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA----------FFGVALNQMGLACVQRYSINEAVELFEEARS 628 (727)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (727)
.++..-|.-+++.|+|.+|...|..|+..++.+.-...+ .....+.+++.|++..|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 456677899999999999999999999987765322111 1234678899999999999999999999999
Q ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
. +|....+|+..|.+....=+..+|..-|.+++++
T Consensus 259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 259 H--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred c--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 8 9999999999999999999999999999999987
No 250
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.54 E-value=0.00018 Score=48.03 Aligned_cols=41 Identities=44% Similarity=0.531 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 004848 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD 640 (727)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 640 (727)
+.++.++|.+|..+|++++|+.++++++.+.++.+|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46889999999999999999999999999999999998885
No 251
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.53 E-value=0.011 Score=52.63 Aligned_cols=124 Identities=22% Similarity=0.280 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhCCCCch
Q 004848 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS-DSYDSFKNAISKLRAIGERKSA 597 (727)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~ 597 (727)
.+...|......++...++..+++++.++...+-..... ..|- .....+..
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~--------------~~W~~~~r~~l~~-------------- 59 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD--------------EEWVEPERERLRE-------------- 59 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT--------------STTHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc--------------cHHHHHHHHHHHH--------------
Confidence 344456666777889999999999998886442211000 1111 11111211
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 004848 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677 (727)
Q Consensus 598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g 677 (727)
....++..++..+...|++++|+.++++++.. +|..-.++..+..+|...|+..+|+..|+++.....+-+|
T Consensus 60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg 131 (146)
T PF03704_consen 60 LYLDALERLAEALLEAGDYEEALRLLQRALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG 131 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence 13356777888999999999999999999999 9999999999999999999999999999999999887777
Q ss_pred C
Q 004848 678 T 678 (727)
Q Consensus 678 ~ 678 (727)
.
T Consensus 132 ~ 132 (146)
T PF03704_consen 132 I 132 (146)
T ss_dssp -
T ss_pred c
Confidence 4
No 252
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.52 E-value=0.007 Score=54.20 Aligned_cols=140 Identities=15% Similarity=0.156 Sum_probs=96.8
Q ss_pred HHHHHHHHcCCH---HHHHHHHHHHHHHHHHhCC-----------C--CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004848 563 QMGVMYYMLGNY---SDSYDSFKNAISKLRAIGE-----------R--KSAFFGVALNQMGLACVQRYSINEAVELFEEA 626 (727)
Q Consensus 563 ~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~-----------~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 626 (727)
..|.-|+...+. .+|-..|++++.....-.. . ...+-..+...++..+...+++++|+..++.+
T Consensus 36 lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~ 115 (207)
T COG2976 36 LFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQA 115 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 345555554443 3666677776665421111 1 11223345566788899999999999999999
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHH
Q 004848 627 RSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQ 706 (727)
Q Consensus 627 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~ 706 (727)
+..... ..-...+-.+||.+...+|.+++|+..+..... +.-........|.++...|+.++|+ .
T Consensus 116 l~~t~D-----e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~~w~~~~~elrGDill~kg~k~~Ar-~ 180 (207)
T COG2976 116 LAQTKD-----ENLKALAALRLARVQLQQKKADAALKTLDTIKE---------ESWAAIVAELRGDILLAKGDKQEAR-A 180 (207)
T ss_pred Hccchh-----HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------ccHHHHHHHHhhhHHHHcCchHHHH-H
Confidence 865211 122233667899999999999999998876553 2233444566799999999999999 9
Q ss_pred HHHHHHHHhhh
Q 004848 707 SLETLLDANSR 717 (727)
Q Consensus 707 ~l~~al~~~p~ 717 (727)
.|+++++.++.
T Consensus 181 ay~kAl~~~~s 191 (207)
T COG2976 181 AYEKALESDAS 191 (207)
T ss_pred HHHHHHHccCC
Confidence 99999998654
No 253
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.49 E-value=0.028 Score=59.16 Aligned_cols=83 Identities=10% Similarity=0.081 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchh
Q 004848 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF 598 (727)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 598 (727)
.+..++..+.....+.-|.+.|.+.-+. ..+..++...++|++|..+.++. +..
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------------ksiVqlHve~~~W~eAFalAe~h-----------Pe~ 802 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------------KSLVQLHVETQRWDEAFALAEKH-----------PEF 802 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------------HHHhhheeecccchHhHhhhhhC-----------ccc
Confidence 3444444455555555555555443221 12344556667777766554432 233
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004848 599 FGVALNQMGLACVQRYSINEAVELFEEAR 627 (727)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 627 (727)
...+|...|+.+....++++|.+.|.+|-
T Consensus 803 ~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 803 KDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred cccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 34455566666666666666666665553
No 254
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0011 Score=63.97 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Q 004848 264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG 343 (727)
Q Consensus 264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 343 (727)
.+.-+-.-|.-|+...+|..|+..|.+.|... ..++...+.+|.+.|-+....|+|..|+.-..+++.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------ 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK-----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------ 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 56667778999999999999999999999875 4555567778999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004848 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (727)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (727)
+|....+++.-|.|++.+.++.+|..+++..+.+...
T Consensus 149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 8999999999999999999999999999999877643
No 255
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.49 E-value=0.019 Score=63.15 Aligned_cols=283 Identities=19% Similarity=0.164 Sum_probs=179.9
Q ss_pred ChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Q 004848 280 QYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAML-----GQLENSLMCYTTGLEVQKQVLGETDPRVGETCR 354 (727)
Q Consensus 280 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 354 (727)
....|..+++.+.... .+.....+|.+|..- .+.+.|+.+|..+.....+.. ......+.+
T Consensus 227 ~~~~a~~~~~~~a~~g-----------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~ 292 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG-----------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQY 292 (552)
T ss_pred hhhHHHHHHHHHHhhc-----------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCcccc
Confidence 3567888888887653 233467778877654 689999999999988321110 111334678
Q ss_pred HHHHHHHHhc-----CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCC
Q 004848 355 YLAEAHVQAL-----QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG---DHEAALEHLVLASMTMIAND 426 (727)
Q Consensus 355 ~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~ 426 (727)
.+|.+|.... ++..|..+|.++-..... .+.+.+|.++.... ++..|.++|..|..
T Consensus 293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~----------~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~------ 356 (552)
T KOG1550|consen 293 GLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP----------DAQYLLGVLYETGTKERDYRRAFEYYSLAAK------ 356 (552)
T ss_pred HHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc----------hHHHHHHHHHHcCCccccHHHHHHHHHHHHH------
Confidence 8999988753 678899998887665422 45888898888766 67899999998853
Q ss_pred CChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-CChHHHHHHHHHHH
Q 004848 427 QDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENAL 501 (727)
Q Consensus 427 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al 501 (727)
.....+.+.++.+|.. .-+...|..++.++.+. . .+.+...++.++..- ++++.+...+....
T Consensus 357 --~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~--------g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 357 --AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK--------G--NPSAAYLLGAFYEYGVGRYDTALALYLYLA 424 (552)
T ss_pred --cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc--------c--ChhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence 2344577788888764 34788999999999886 2 233344444444332 78888777776665
Q ss_pred HHHhcCCCCCChHhHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc----CC
Q 004848 502 RIYEKPVPGVPPEEIASGLTDVSSIYESM----NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML----GN 573 (727)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~ 573 (727)
+..-.. ....+..+.......... .+...+...+.++... |. ..+...+|.+|+.- .+
T Consensus 425 ~~g~~~-----~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-----g~----~~a~~~lgd~y~~g~g~~~d 490 (552)
T KOG1550|consen 425 ELGYEV-----AQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ-----GN----ADAILKLGDYYYYGLGTGRD 490 (552)
T ss_pred HhhhhH-----HhhHHHHHHHhccccccccccccchhHHHHHHHHHHhc-----cC----HHHHhhhcceeeecCCCCCC
Confidence 552111 111111111111111111 1344455555544332 11 24556778877764 36
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHH
Q 004848 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR---YSINEAVELFEEARSI 629 (727)
Q Consensus 574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~ 629 (727)
++.|...|..+... . +...+++|.++..- ..+..|..+|.++...
T Consensus 491 ~~~a~~~y~~a~~~----------~-~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 491 PEKAAAQYARASEQ----------G-AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred hHHHHHHHHHHHHh----------h-hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 89999999988764 1 57788888887642 1268888888888765
No 256
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.45 E-value=0.017 Score=58.52 Aligned_cols=206 Identities=15% Similarity=0.084 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH
Q 004848 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM 570 (727)
Q Consensus 491 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 570 (727)
..+...+.+.+...++.+. ........+..++-..|....+|+.-+.+.+..-.+ +... ......+....|.++.+
T Consensus 116 ~g~~~~l~~~L~~i~~rLd-~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~--~~~~~~i~~~yafALnR 191 (374)
T PF13281_consen 116 SGARKELAKELRRIRQRLD-DPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCD--VANQHNIKFQYAFALNR 191 (374)
T ss_pred hhHHHHHHHHHHHHHHhhC-CHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccc--hhcchHHHHHHHHHHhh
Confidence 3334444444444444332 112223455667777888889998877777654443 1110 11123455677888888
Q ss_pred ---cCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHHhcCCCC
Q 004848 571 ---LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR---------YSINEAVELFEEARSILEQECGPYH 638 (727)
Q Consensus 571 ---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~ 638 (727)
.|+.++|+..+..++... ....+.++..+|.+|-.. ...++|+..|.++.++ .
T Consensus 192 rn~~gdre~Al~il~~~l~~~-------~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--------~ 256 (374)
T PF13281_consen 192 RNKPGDREKALQILLPVLESD-------ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--------E 256 (374)
T ss_pred cccCCCHHHHHHHHHHHHhcc-------CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--------C
Confidence 899999999998875431 112346777778777532 2366777777777776 4
Q ss_pred ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004848 639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG----TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (727)
Q Consensus 639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g----~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (727)
++.. .-.|++.++...|...+...-+++........+| ......-..+..++++..-.|++++|. +.+++++.+
T Consensus 257 ~~~Y-~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~-~a~e~~~~l 334 (374)
T PF13281_consen 257 PDYY-SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAI-QAAEKAFKL 334 (374)
T ss_pred cccc-chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHH-HHHHHHhhc
Confidence 4432 3457777788888755555444444422222222 112233344556788888899999999 999999999
Q ss_pred hhh
Q 004848 715 NSR 717 (727)
Q Consensus 715 ~p~ 717 (727)
.|.
T Consensus 335 ~~~ 337 (374)
T PF13281_consen 335 KPP 337 (374)
T ss_pred CCc
Confidence 887
No 257
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.44 E-value=0.031 Score=50.18 Aligned_cols=97 Identities=11% Similarity=0.067 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 004848 561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD 640 (727)
Q Consensus 561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 640 (727)
...++..+...+++++|+..++.++.... +......+-.+||++..++|.+++|+..+..... +..
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~-----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~~w 157 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTK-----DENLKALAALRLARVQLQQKKADAALKTLDTIKE---------ESW 157 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccch-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------ccH
Confidence 45678888999999999999999886422 2334566778899999999999999998876543 234
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
........|.++...|+-++|+..|+++++.
T Consensus 158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 158 AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 4456678899999999999999999999986
No 258
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.42 E-value=0.033 Score=45.31 Aligned_cols=120 Identities=19% Similarity=0.186 Sum_probs=88.1
Q ss_pred HHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848 516 IASGLTDVSSI--YESMNELEQAIKLLQKALKIYNDAPGQQS-----TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (727)
Q Consensus 516 ~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (727)
++.+|..|+.. .+..|-|++|...+.+++++....|.... .-+.++..|+..+..+|+|++++....+++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 34555555544 45568899999999999999887765432 335567789999999999999999999999998
Q ss_pred HHhCCCCc---hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004848 589 RAIGERKS---AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (727)
Q Consensus 589 ~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (727)
.+-++.+. .....+.++.|..+...|+.++|+..|+.+.++..+..|
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 87765543 234456677888999999999999999999999777655
No 259
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0007 Score=62.12 Aligned_cols=98 Identities=15% Similarity=0.197 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh
Q 004848 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682 (727)
Q Consensus 603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~ 682 (727)
+..-|..|+...+|..|+.+|.+|+.+ +|..+..+.+.|.||.++.+++.+..-..+++++ .|+
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N 76 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPN 76 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChH
Confidence 334466677778899999999999999 9999989999999999999999999999999987 699
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.+.+++.||.++.....+++|+ ..|.+|..+..+
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI-~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAI-KVLQRAYSLLRE 110 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHH-HHHHHHHHHHhc
Confidence 9999999999999999999999 999999877655
No 260
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.33 E-value=0.0093 Score=54.50 Aligned_cols=125 Identities=17% Similarity=0.240 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccH
Q 004848 454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL 533 (727)
Q Consensus 454 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 533 (727)
-++.-++.++...+ ......++..+|..|.+.|+++.|++.|.++.... .........+..+..+....+++
T Consensus 18 ~Le~elk~~~~n~~--kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~------~~~~~~id~~l~~irv~i~~~d~ 89 (177)
T PF10602_consen 18 KLEAELKDAKSNLG--KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC------TSPGHKIDMCLNVIRVAIFFGDW 89 (177)
T ss_pred HHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc------CCHHHHHHHHHHHHHHHHHhCCH
Confidence 33444444333332 46677899999999999999999999999988773 33556788899999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848 534 EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (727)
Q Consensus 534 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (727)
.....++.++-.+.... +++.........-|..+...++|.+|...|-.+...
T Consensus 90 ~~v~~~i~ka~~~~~~~-~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 90 SHVEKYIEKAESLIEKG-GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 99999999999887764 554444555666788888899999999998877643
No 261
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.33 E-value=0.0016 Score=57.68 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004848 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL---DDAIEILEFVVGIREEKLGTANPDVDDEKRRLAE 692 (727)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~ 692 (727)
++.|.+.++..... +|...+.+++.|.++..+.++ .++..+++.|+.-+++.+. -+|+..++++.||.
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHH
Confidence 56677777776666 888888889888888776443 3344444444433333221 16999999999999
Q ss_pred HHHHhCC-----------hhHHHHHHHHHHHHHhhh
Q 004848 693 LLKEAGR-----------VRSRKAQSLETLLDANSR 717 (727)
Q Consensus 693 ~~~~~g~-----------~~~A~~~~l~~al~~~p~ 717 (727)
+|..++. +++|. .+|++|...+|.
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~-~~FqkAv~~~P~ 112 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKAT-EYFQKAVDEDPN 112 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHH-HHHHHHHHH-TT
T ss_pred HHHHHHhhcCChHHHHHHHHHHH-HHHHHHHhcCCC
Confidence 9987664 66788 888889988886
No 262
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.28 Score=51.28 Aligned_cols=221 Identities=12% Similarity=0.031 Sum_probs=137.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 004848 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390 (727)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 390 (727)
.+.-+..+...|+.+.|+..+..++....+ .-....++.+|.++..+.+|..|...+....+...-..
T Consensus 270 ll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~------ 337 (546)
T KOG3783|consen 270 LLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSH------ 337 (546)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhH------
Confidence 556788888888899999999998884222 23456778899999999999999999988777653221
Q ss_pred HHHHHHHHH-HHHH--------HcCCHHHHHHHHHHHHHHHHhCCCC-hhHHH----------------------HHHHH
Q 004848 391 EAADRRLMG-LICE--------TKGDHEAALEHLVLASMTMIANDQD-AEVAS----------------------VDCSI 438 (727)
Q Consensus 391 ~a~~~~~l~-~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~----------------------~~~~l 438 (727)
+ .|..++ .|+. ..|+.+.|..+++....++...+.. |.... -++.+
T Consensus 338 -a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El 415 (546)
T KOG3783|consen 338 -A-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYEL 415 (546)
T ss_pred -H-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHH
Confidence 1 233333 2322 2346666766666655444432211 11000 11222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHH
Q 004848 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (727)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (727)
+ |+..|--.-+.....++...+....-.+..+...-+..+|.++..+|+...|..+|..+++..... ..++...+.
T Consensus 416 ~--Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~--~~d~w~~Pf 491 (546)
T KOG3783|consen 416 A--YFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKR--TEDLWAVPF 491 (546)
T ss_pred H--HHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--ccccccccH
Confidence 2 222221111111112222222221111334456677788999999999999999999888653322 345566788
Q ss_pred HHHHHHHHHHhccc-HHHHHHHHHHHHHHHHh
Q 004848 519 GLTDVSSIYESMNE-LEQAIKLLQKALKIYND 549 (727)
Q Consensus 519 ~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~ 549 (727)
+++.+|.+|..+|. ..++..++.+|.....+
T Consensus 492 A~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 492 ALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 99999999999999 99999999999876543
No 263
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0071 Score=58.55 Aligned_cols=109 Identities=18% Similarity=0.198 Sum_probs=95.0
Q ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004848 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631 (727)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 631 (727)
+.++..+.-+-.-|.-|++..+|..|+.+|.+.+.. +. .++...+.+|.+.|.+....|+|..|+.-..+|+.+
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc--~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~-- 148 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KC--ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL-- 148 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cC--CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 445556777778899999999999999999999874 22 234567889999999999999999999999999999
Q ss_pred HhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848 632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (727)
Q Consensus 632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (727)
+|....+++.=|.|+..+.++.+|..+.+..+.+.
T Consensus 149 ------~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 ------KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ------CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999998887664
No 264
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.29 Score=51.24 Aligned_cols=239 Identities=12% Similarity=0.007 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004848 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV 473 (727)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 473 (727)
....-+..+...|+.+.|+..+...+. ..........++.+|.++..+.+|..|...+....+. ....
T Consensus 269 wll~~ar~l~~~g~~eaa~~~~~~~v~----~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~de--------sdWS 336 (546)
T KOG3783|consen 269 WLLMEARILSIKGNSEAAIDMESLSIP----IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDE--------SDWS 336 (546)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh--------hhhh
Confidence 355667777777777777777776653 0111223445667777888888888888877776665 2222
Q ss_pred HHHHHHH-HHHHHH--------cCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 004848 474 ASVFVRL-ADMYNR--------TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544 (727)
Q Consensus 474 ~~~~~~l-a~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (727)
...|..+ |.|+.. .|+-+.|-.+++....+.... +.+.|... -..+++-
T Consensus 337 ~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a--~K~~P~E~--------------------f~~RKve 394 (546)
T KOG3783|consen 337 HAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANA--GKNLPLEK--------------------FIVRKVE 394 (546)
T ss_pred HHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhc--cccCchhH--------------------HHHHHHH
Confidence 2222222 333322 234444444444444433321 11111100 0111222
Q ss_pred HHHHhCC-CCCccHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHH
Q 004848 545 KIYNDAP-GQQSTVAGIEAQMGVMYYML--GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVE 621 (727)
Q Consensus 545 ~~~~~~~-~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 621 (727)
+.....+ +....++.-++.++.++..- ....+.. ++...+....-.+......-+..+|.++..+|+...|..
T Consensus 395 rf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~ 470 (546)
T KOG3783|consen 395 RFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPK 470 (546)
T ss_pred HHhccccccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 2111111 00001111122222222211 1222222 222222211111334456677788999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHH
Q 004848 622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-LDDAIEILEFVVGI 671 (727)
Q Consensus 622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 671 (727)
+|..+++..... ..+..-.+.+++.||.+|..+|. ..+|..++.+|.+.
T Consensus 471 ~f~i~~~~e~~~-~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 471 CFKIQVEKESKR-TEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred HHHHHHHHHHhh-ccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 999998763222 22244456699999999999999 99999999999865
No 265
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.31 E-value=0.0034 Score=59.11 Aligned_cols=100 Identities=17% Similarity=0.189 Sum_probs=81.8
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC-----ChhHHHHH
Q 004848 613 RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA-----NPDVDDEK 687 (727)
Q Consensus 613 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~-----~p~~~~~~ 687 (727)
...+++|++.|.-|+-...-... .+...+.++..+|++|..+|+.+....++++|+..+.+.+... .-+.....
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~-~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKE-KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 44688999999999877554433 3456778999999999999999999999999999888776422 22446788
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004848 688 RRLAELLKEAGRVRSRKAQSLETLLDA 714 (727)
Q Consensus 688 ~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (727)
+.+|.+..+.|++++|. ++|.+++..
T Consensus 169 YLigeL~rrlg~~~eA~-~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAK-RWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHH-HHHHHHHcC
Confidence 89999999999999999 999999864
No 266
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.31 E-value=0.0072 Score=62.67 Aligned_cols=94 Identities=16% Similarity=0.079 Sum_probs=78.7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004848 607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTL-GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDD 685 (727)
Q Consensus 607 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~ 685 (727)
|..+...|+...|+.++..|+.. .|... ..+.+||.++..-|-..+|-.++.+++.+. ...+.
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~--------~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------~sepl 677 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNL--------APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------SSEPL 677 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhcc--------ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--------ccCch
Confidence 44455689999999999999876 34322 256899999999999999999999999874 23345
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 686 EKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 686 ~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.++.+|.+|..+.+.+.|+ +.|+.|++++|+
T Consensus 678 ~~~~~g~~~l~l~~i~~a~-~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGAL-EAFRQALKLTTK 708 (886)
T ss_pred HHHhcchhHHHHhhhHHHH-HHHHHHHhcCCC
Confidence 7788999999999999999 999999999998
No 267
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.29 E-value=0.033 Score=45.30 Aligned_cols=120 Identities=17% Similarity=0.108 Sum_probs=86.0
Q ss_pred HHHHHHHHHH--HHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848 349 VGETCRYLAE--AHVQALQFSEAQKFCQMALDIHKDNGSPASL----EEAADRRLMGLICETKGDHEAALEHLVLASMTM 422 (727)
Q Consensus 349 ~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 422 (727)
++.+|..|+. -.+..|-|++|..-+.+++++.......... -.+.++..|+..+..+|+|++++..-.+++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 4455555544 3456689999999999999998776554322 236788889999999999999999999998877
Q ss_pred HhCCC-C----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004848 423 IANDQ-D----AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE 468 (727)
Q Consensus 423 ~~~~~-~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 468 (727)
...+. + ...+.+.+..|..+..+|+.++|+..|+.+-++..+..|+
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 65433 2 2344556788999999999999999999999988776554
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.26 E-value=0.00064 Score=45.82 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004848 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG 650 (727)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 650 (727)
.++..+|.+|...|++++|+++|+++++. +|+...++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 46788999999999999999999999999 8999999988875
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.25 E-value=0.00066 Score=45.78 Aligned_cols=42 Identities=29% Similarity=0.499 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004848 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAE 692 (727)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~ 692 (727)
.++..+|.+|..+|++++|+..|+++++. +|++..++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 36889999999999999999999999987 7888889988875
No 270
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.23 E-value=0.0068 Score=57.11 Aligned_cols=100 Identities=12% Similarity=0.072 Sum_probs=80.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC-----CccHHHHH
Q 004848 571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY-----HPDTLGVY 645 (727)
Q Consensus 571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~ 645 (727)
...+++|+..|.-|+-...-.... +...+.++..+|++|...|+.+....++++|++.+.+..... .-+...++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~-~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEK-PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 446788888888888765544443 446788999999999999999988888999988888765422 22446688
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 646 SNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 646 ~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
+.+|.++.+.|++++|..+|.+++..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999864
No 271
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.21 E-value=0.03 Score=49.66 Aligned_cols=108 Identities=19% Similarity=0.151 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhcccchhccCccch-------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004848 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA-------------LAKFAGHMQLGDTYAMLGQLENSLMCYTTG 334 (727)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 334 (727)
+...|......|+.+.++..+++++.+.....-+..+ ...+.++..++..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3344556667788888999999988876432221111 123445677888899999999999999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004848 335 LEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383 (727)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 383 (727)
+.. +|..-.++..+..+|...|+...|+..|++......+.
T Consensus 89 l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e 129 (146)
T PF03704_consen 89 LAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREE 129 (146)
T ss_dssp HHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred Hhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 999 89999999999999999999999999999998877643
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.18 E-value=0.47 Score=50.87 Aligned_cols=185 Identities=12% Similarity=0.089 Sum_probs=106.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchh----ccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004848 258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVI----EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTT 333 (727)
Q Consensus 258 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 333 (727)
..|+|.. |..+|......-.++-|...|-+.-..... ..+.-+ .--...|.+-..-|+|++|.+.|-.
T Consensus 688 dnPHprL---WrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~-----s~~~q~aei~~~~g~feeaek~yld 759 (1189)
T KOG2041|consen 688 DNPHPRL---WRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIH-----SKEQQRAEISAFYGEFEEAEKLYLD 759 (1189)
T ss_pred cCCchHH---HHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhh-----hHHHHhHhHhhhhcchhHhhhhhhc
Confidence 4577555 666777777777788888877766543210 000000 0123456666677899999888866
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q 004848 334 GLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALE 413 (727)
Q Consensus 334 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~ 413 (727)
+-.. +.+ ..++.+.|+|-...++++.. ..+.++...-.++..+|..+..+..+++|.+
T Consensus 760 ~drr----------DLA------ielr~klgDwfrV~qL~r~g------~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 760 ADRR----------DLA------IELRKKLGDWFRVYQLIRNG------GSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred cchh----------hhh------HHHHHhhhhHHHHHHHHHcc------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 111 12345566665555444321 1222344455679999999999999999999
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004848 414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES 493 (727)
Q Consensus 414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 493 (727)
+|.+.- +. -++..+++...+|++-..+.+ . -|.....+-.+|..+...|.-++|
T Consensus 818 yY~~~~-------~~-------e~~~ecly~le~f~~LE~la~--------~----Lpe~s~llp~~a~mf~svGMC~qA 871 (1189)
T KOG2041|consen 818 YYSYCG-------DT-------ENQIECLYRLELFGELEVLAR--------T----LPEDSELLPVMADMFTSVGMCDQA 871 (1189)
T ss_pred HHHhcc-------ch-------HhHHHHHHHHHhhhhHHHHHH--------h----cCcccchHHHHHHHHHhhchHHHH
Confidence 997652 22 234455556555554332211 1 233444555566666666766666
Q ss_pred HHHHH
Q 004848 494 KSYCE 498 (727)
Q Consensus 494 ~~~~~ 498 (727)
.+.|-
T Consensus 872 V~a~L 876 (1189)
T KOG2041|consen 872 VEAYL 876 (1189)
T ss_pred HHHHH
Confidence 66553
No 273
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.16 E-value=0.02 Score=52.30 Aligned_cols=125 Identities=16% Similarity=0.113 Sum_probs=95.0
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 004848 415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK 494 (727)
Q Consensus 415 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 494 (727)
++.-+.-...+........++..+|..|...|+++.|++.|.++.+.... .......+..+..+....+++....
T Consensus 19 Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-----~~~~id~~l~~irv~i~~~d~~~v~ 93 (177)
T PF10602_consen 19 LEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS-----PGHKIDMCLNVIRVAIFFGDWSHVE 93 (177)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-----HHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 33334444445556677788999999999999999999999998776322 3456778889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q 004848 495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (727)
Q Consensus 495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (727)
.++.++-.+... +.+..........-|..+...++|..|...|-.+...+
T Consensus 94 ~~i~ka~~~~~~---~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 94 KYIEKAESLIEK---GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 999999999776 33344444555566777788899999998887765443
No 274
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.15 E-value=0.00095 Score=42.05 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 684 DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 684 ~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+.+++++|.+|..+|++++|+ .+|+++++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~-~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEAL-EYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHH-HHHHHHHHHCcC
Confidence 467899999999999999999 999999999995
No 275
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.08 E-value=0.55 Score=49.90 Aligned_cols=391 Identities=13% Similarity=0.037 Sum_probs=229.9
Q ss_pred ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHHHHHHcCChhHHHH
Q 004848 208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMC-LHVIAAIYCSLGQYNEAIP 286 (727)
Q Consensus 208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~ 286 (727)
..+.......|-.-..|...|..-++.|. .+.+++.|++++..+... ... +..++.+--..|+.+.-..
T Consensus 66 ~~y~~fL~kyPl~~gyW~kfA~~E~klg~-~~~s~~Vfergv~aip~S---------vdlW~~Y~~f~~n~~~d~~~lr~ 135 (577)
T KOG1258|consen 66 EVYDIFLSKYPLCYGYWKKFADYEYKLGN-AENSVKVFERGVQAIPLS---------VDLWLSYLAFLKNNNGDPETLRD 135 (577)
T ss_pred HHHHHHHhhCccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhhhH---------HHHHHHHHHHHhccCCCHHHHHH
Confidence 34555666788888999999999999996 999999999999876422 222 2233444445677788888
Q ss_pred HHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHHHH---
Q 004848 287 VLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET-CRYLAEAHVQ--- 362 (727)
Q Consensus 287 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~la~~~~~--- 362 (727)
.|++|+..... +... ...|-..-..-..++++..-...|++.+++ |..... ++..-.-+..
T Consensus 136 ~fe~A~~~vG~----dF~S--~~lWdkyie~en~qks~k~v~~iyeRilei---------P~~~~~~~f~~f~~~l~~~~ 200 (577)
T KOG1258|consen 136 LFERAKSYVGL----DFLS--DPLWDKYIEFENGQKSWKRVANIYERILEI---------PLHQLNRHFDRFKQLLNQNE 200 (577)
T ss_pred HHHHHHHhccc----chhc--cHHHHHHHHHHhccccHHHHHHHHHHHHhh---------hhhHhHHHHHHHHHHHhcCC
Confidence 88888876522 1111 111333333446677788888888888776 221111 1110000001
Q ss_pred ---hcCHHHHHHHHHHHHH---------------HHH-hcCCC-CCHHHHH-----HHHHHHHHHHHcCCHHHHHHHHHH
Q 004848 363 ---ALQFSEAQKFCQMALD---------------IHK-DNGSP-ASLEEAA-----DRRLMGLICETKGDHEAALEHLVL 417 (727)
Q Consensus 363 ---~g~~~~A~~~~~~al~---------------~~~-~~~~~-~~~~~a~-----~~~~l~~~~~~~g~~~~A~~~~~~ 417 (727)
....+++...-..... ..- ....+ ....... .....-.++...-...+.+..|+.
T Consensus 201 ~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~ 280 (577)
T KOG1258|consen 201 EKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEE 280 (577)
T ss_pred hhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhh
Confidence 1122222222111110 000 00000 0000011 000111122222223333333333
Q ss_pred HHHH--HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004848 418 ASMT--MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKS 495 (727)
Q Consensus 418 al~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 495 (727)
.+.. ....+........|..........|+++...-.|++++--+ ......|...+......|+.+-|..
T Consensus 281 ~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c--------A~Y~efWiky~~~m~~~~~~~~~~~ 352 (577)
T KOG1258|consen 281 GIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC--------ALYDEFWIKYARWMESSGDVSLANN 352 (577)
T ss_pred hccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH--------hhhHHHHHHHHHHHHHcCchhHHHH
Confidence 3211 11122344555667777788888999999999999998763 4566788889999889999999999
Q ss_pred HHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHH
Q 004848 496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS 575 (727)
Q Consensus 496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 575 (727)
.+..+.++..+ ....+...-+.+-...|++..|...+++...-.+.. ..+-.........+|+.+
T Consensus 353 ~~~~~~~i~~k--------~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~-------v~~~l~~~~~e~r~~~~~ 417 (577)
T KOG1258|consen 353 VLARACKIHVK--------KTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGL-------VEVVLRKINWERRKGNLE 417 (577)
T ss_pred HHHhhhhhcCC--------CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCch-------hhhHHHHHhHHHHhcchh
Confidence 99999888644 234455666777788899999999999988766332 233344455666778888
Q ss_pred HHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 004848 576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC-VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654 (727)
Q Consensus 576 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 654 (727)
.+.. +...+..... +..+.......+...++.. .-.++.+.|...+.+++++ .|+....+..+..+...
T Consensus 418 ~~~~-~~~l~s~~~~-~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~--------~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 418 DANY-KNELYSSIYE-GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI--------LPDCKVLYLELIRFELI 487 (577)
T ss_pred hhhH-HHHHHHHhcc-cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--------CCccHHHHHHHHHHHHh
Confidence 7775 2233322211 2223333455666666544 4467899999999999998 77777777777666655
Q ss_pred cC
Q 004848 655 IG 656 (727)
Q Consensus 655 ~g 656 (727)
.+
T Consensus 488 ~~ 489 (577)
T KOG1258|consen 488 QP 489 (577)
T ss_pred CC
Confidence 54
No 276
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.08 E-value=0.0078 Score=53.38 Aligned_cols=67 Identities=24% Similarity=0.270 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC----ChHHHHHH
Q 004848 599 FGVALNQMGLACVQRYS----------INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG----RLDDAIEI 664 (727)
Q Consensus 599 ~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~ 664 (727)
.+..+++.|.++..+.+ +++|+.-|++|+.+ +|+...+++++|.+|..++ +..+|..+
T Consensus 24 DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--------~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~ 95 (186)
T PF06552_consen 24 DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--------NPNKHDALWCLGNAYTSLAFLTPDTAEAEEY 95 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 45677777777665533 45566666666666 8999999999999998765 34455555
Q ss_pred HHHHHHHHH
Q 004848 665 LEFVVGIRE 673 (727)
Q Consensus 665 ~~~al~~~~ 673 (727)
|++|...++
T Consensus 96 F~kA~~~Fq 104 (186)
T PF06552_consen 96 FEKATEYFQ 104 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
No 277
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.07 E-value=0.00056 Score=42.89 Aligned_cols=34 Identities=29% Similarity=0.553 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHH
Q 004848 622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663 (727)
Q Consensus 622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 663 (727)
+|++|+++ +|+...+|++||.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 47899999 99999999999999999999999963
No 278
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.02 E-value=0.67 Score=49.78 Aligned_cols=191 Identities=16% Similarity=0.025 Sum_probs=95.2
Q ss_pred ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHH-----HHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChh
Q 004848 208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRA-----AKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYN 282 (727)
Q Consensus 208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~A-----l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 282 (727)
++......++|. +.+|..+|......-+ ++.|...|-+. +++.+++..... --...|.+-.--|+|+
T Consensus 680 edA~qfiEdnPH-prLWrllAe~Al~Kl~-l~tAE~AFVrc~dY~Gik~vkrl~~i~s------~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 680 EDAIQFIEDNPH-PRLWRLLAEYALFKLA-LDTAEHAFVRCGDYAGIKLVKRLRTIHS------KEQQRAEISAFYGEFE 751 (1189)
T ss_pred HHHHHHHhcCCc-hHHHHHHHHHHHHHHh-hhhHhhhhhhhccccchhHHHHhhhhhh------HHHHhHhHhhhhcchh
Confidence 333444455543 4466666666665554 66666665442 222222210000 0012344444558999
Q ss_pred HHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 004848 283 EAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ 362 (727)
Q Consensus 283 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 362 (727)
+|.+.|-.+-... .. ..++..+|+|-...++++.. -.+.++.....++..+|..+..
T Consensus 752 eaek~yld~drrD----------LA-------ielr~klgDwfrV~qL~r~g------~~d~dD~~~e~A~r~ig~~fa~ 808 (1189)
T KOG2041|consen 752 EAEKLYLDADRRD----------LA-------IELRKKLGDWFRVYQLIRNG------GSDDDDEGKEDAFRNIGETFAE 808 (1189)
T ss_pred Hhhhhhhccchhh----------hh-------HHHHHhhhhHHHHHHHHHcc------CCCcchHHHHHHHHHHHHHHHH
Confidence 9998886654321 11 12334455554433333221 0112234456788888888888
Q ss_pred hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 004848 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY 442 (727)
Q Consensus 363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 442 (727)
...|++|.++|.+.-.. -.+..+++...+|++-..+.+. -|+....+-.+|.++
T Consensus 809 ~~~We~A~~yY~~~~~~----------------e~~~ecly~le~f~~LE~la~~----------Lpe~s~llp~~a~mf 862 (1189)
T KOG2041|consen 809 MMEWEEAAKYYSYCGDT----------------ENQIECLYRLELFGELEVLART----------LPEDSELLPVMADMF 862 (1189)
T ss_pred HHHHHHHHHHHHhccch----------------HhHHHHHHHHHhhhhHHHHHHh----------cCcccchHHHHHHHH
Confidence 88888888888765322 2344455555555443332221 112222334455556
Q ss_pred HHcCCHHHHHHHH
Q 004848 443 LSLSRYDEAGFAY 455 (727)
Q Consensus 443 ~~~g~~~~A~~~~ 455 (727)
...|.-++|.+.|
T Consensus 863 ~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 863 TSVGMCDQAVEAY 875 (1189)
T ss_pred HhhchHHHHHHHH
Confidence 6666656655554
No 279
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.082 Score=50.96 Aligned_cols=154 Identities=19% Similarity=0.119 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhcc
Q 004848 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 299 (727)
....-+..+..+...|+ +.+|...|..++... ++...+...++.+|...|+.+.|...+...-.-.
T Consensus 133 ~~e~~~~~~~~~~~~e~-~~~a~~~~~~al~~~---------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~---- 198 (304)
T COG3118 133 EEEEALAEAKELIEAED-FGEAAPLLKQALQAA---------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA---- 198 (304)
T ss_pred HHHHHHHHhhhhhhccc-hhhHHHHHHHHHHhC---------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc----
Confidence 34455677888899997 999999999999875 3336667889999999999999999998753322
Q ss_pred CccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004848 300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379 (727)
Q Consensus 300 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 379 (727)
.......+.+...+..-....++.... ++.+.. +|+...+.+.+|..+...|+.+.|.+.+-..+..
T Consensus 199 -~~~~~~~l~a~i~ll~qaa~~~~~~~l----~~~~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 199 -QDKAAHGLQAQIELLEQAAATPEIQDL----QRRLAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred -hhhHHHHHHHHHHHHHHHhcCCCHHHH----HHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 111111111222222222333333322 222222 6888999999999999999999999999887777
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHcC
Q 004848 380 HKDNGSPASLEEAADRRLMGLICETKG 406 (727)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~l~~~~~~~g 406 (727)
.....+. .+...+-.++...|
T Consensus 266 d~~~~d~------~~Rk~lle~f~~~g 286 (304)
T COG3118 266 DRGFEDG------EARKTLLELFEAFG 286 (304)
T ss_pred cccccCc------HHHHHHHHHHHhcC
Confidence 6544332 23444444444444
No 280
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.98 E-value=0.0017 Score=40.80 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 684 DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 684 ~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+.+++.+|.++...|++++|+ ++|+++++++|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~-~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAI-EYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHCcC
Confidence 357899999999999999999 999999999985
No 281
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.97 E-value=0.0084 Score=59.75 Aligned_cols=136 Identities=10% Similarity=0.051 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004848 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ-RYSINEAVELFEEARSILEQECGPYH 638 (727)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (727)
+|..+.....+.+..+.|..+|.+|+.. ......+|...|.+... .++.+.|...|+.+++. .
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------f 66 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------F 66 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--------H
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------C
Confidence 4566667777777799999999999631 11233577788888666 56666699999999998 5
Q ss_pred ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+.....|......+...|+.+.|..+|++++... +........|......-...|+.+... ...+++.+..|.
T Consensus 67 ~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~-~v~~R~~~~~~~ 139 (280)
T PF05843_consen 67 PSDPDFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVR-KVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHH-HHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhhh
Confidence 6666777888888999999999999999998642 111113467778888889999999988 888888888765
No 282
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.89 E-value=0.003 Score=39.72 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848 600 GVALNQMGLACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (727)
+.+|+.+|.++..+|++++|+.+|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 357899999999999999999999999998
No 283
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.88 E-value=0.018 Score=57.36 Aligned_cols=136 Identities=12% Similarity=0.085 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004848 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS-LSRYDEAGFAYQKALTAFKTNKGENHPA 472 (727)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~ 472 (727)
+|..+.....+.+..+.|..+|.+|+. .......+|...|.+-+. .++.+.|...|+.+++. .+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------f~~ 68 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------FPS 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--------HTT
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------CCC
Confidence 466667777777789999999999852 333445677888888666 56666699999999988 466
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (727)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (727)
....|......+...++.+.|..+|++++..... ......+|......-...|+.+....+.+++.+..+.
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~------~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPK------EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC------HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 6777888888999999999999999999876321 2224567788888888899999999999999888765
No 284
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.77 E-value=0.0014 Score=41.12 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHH
Q 004848 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK 371 (727)
Q Consensus 330 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 371 (727)
+|++++++ +|....+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 47889998 89999999999999999999999863
No 285
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.77 E-value=0.031 Score=45.08 Aligned_cols=83 Identities=17% Similarity=0.063 Sum_probs=67.7
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004848 360 HVQALQFSEAQKFCQMALDIHKDNGSPA-SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI 438 (727)
Q Consensus 360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 438 (727)
....|+|..|++.+.+.++......... ......++..+|.++...|++++|+..+++++.+.+..++......++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4578999999999999999987776543 123455688899999999999999999999999999998888777777766
Q ss_pred HHHH
Q 004848 439 GDTY 442 (727)
Q Consensus 439 a~~~ 442 (727)
..+.
T Consensus 88 ~~l~ 91 (94)
T PF12862_consen 88 ANLL 91 (94)
T ss_pred HHHh
Confidence 6543
No 286
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.76 E-value=0.81 Score=46.85 Aligned_cols=141 Identities=13% Similarity=0.088 Sum_probs=86.5
Q ss_pred CCChHhHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHH--HHHHHHH-
Q 004848 510 GVPPEEIASGLTDVSSIYESMNE-LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSY--DSFKNAI- 585 (727)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~--~~~~~al- 585 (727)
+.+....+.-+..-|.-+...|. -++|+.+++.+++..+-.. .+ .+....+ -...|.+|+ ..+.+.+
T Consensus 372 DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~-------ec-~n~v~~f-vKq~Y~qaLs~~~~~rLlk 442 (549)
T PF07079_consen 372 DIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDI-------EC-ENIVFLF-VKQAYKQALSMHAIPRLLK 442 (549)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccH-------HH-HHHHHHH-HHHHHHHHHhhhhHHHHHH
Confidence 34455667777788888888887 7889999988887654221 11 0111111 111222222 1222222
Q ss_pred --HHHHHhCCCC-chhHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHH
Q 004848 586 --SKLRAIGERK-SAFFGVALNQM--GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD 660 (727)
Q Consensus 586 --~~~~~~~~~~-~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 660 (727)
....+.+-.. .......-+.| |..++.+|+|.++.-+-.-..++ .| ...++..+|.|+....+|++
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~i--------aP-S~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKI--------AP-SPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CC-cHHHHHHHHHHHHHHhhHHH
Confidence 2223322211 11122334444 45567899999999888887777 77 66799999999999999999
Q ss_pred HHHHHHHH
Q 004848 661 AIEILEFV 668 (727)
Q Consensus 661 A~~~~~~a 668 (727)
|..++...
T Consensus 514 A~~~l~~L 521 (549)
T PF07079_consen 514 AWEYLQKL 521 (549)
T ss_pred HHHHHHhC
Confidence 99998754
No 287
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.76 E-value=0.032 Score=44.94 Aligned_cols=81 Identities=19% Similarity=0.175 Sum_probs=63.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004848 401 ICETKGDHEAALEHLVLASMTMIANDQDA---EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF 477 (727)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 477 (727)
.....|+|..|++.+.+............ ....++.++|.++...|++++|+..+++++.+.++.. |......++
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al 84 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYAL 84 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHH
Confidence 34678999999999999988776665554 5677788999999999999999999999999998876 233444444
Q ss_pred HHHHHH
Q 004848 478 VRLADM 483 (727)
Q Consensus 478 ~~la~~ 483 (727)
..+..+
T Consensus 85 ~~~~~l 90 (94)
T PF12862_consen 85 SWLANL 90 (94)
T ss_pred HHHHHH
Confidence 444443
No 288
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.69 E-value=0.0031 Score=39.62 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004848 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (727)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (727)
+.+++.+|.+++..|++++|+.+|++++.+.|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 367899999999999999999999999998765
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.66 E-value=0.0051 Score=39.23 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004848 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (727)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (727)
++.+||.+|..+|++++|+.+|++++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 478999999999999999999999987754
No 290
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.61 E-value=1.3 Score=47.22 Aligned_cols=388 Identities=11% Similarity=-0.029 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHM-QLGDTYAMLGQLENSLMCYTTGLEVQKQ 340 (727)
Q Consensus 262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~ 340 (727)
|.....|...|..-.+.|..+.+...|++++.-. + . ....|. .++.+-...|+.+.-...|++|+.....
T Consensus 76 Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai-----p-~---SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~ 146 (577)
T KOG1258|consen 76 PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAI-----P-L---SVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL 146 (577)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-----h-h---HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc
Confidence 5556677888889999999999999999998764 1 1 111222 2334444567777777777777776322
Q ss_pred HhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848 341 VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (727)
Q Consensus 341 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~ 420 (727)
+-.....|-..-..-..++++..-...|++.+++-...... ++..=.-+. ..+...-+..+++++.
T Consensus 147 -----dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~--------~f~~f~~~l-~~~~~~~l~~~d~~~~ 212 (577)
T KOG1258|consen 147 -----DFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNR--------HFDRFKQLL-NQNEEKILLSIDELIQ 212 (577)
T ss_pred -----chhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHH--------HHHHHHHHH-hcCChhhhcCHHHHHH
Confidence 11222344444444466777888888888887764322110 110000000 0000011111111111
Q ss_pred HHHhCCC------ChhHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004848 421 TMIANDQ------DAEVASVD-CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES 493 (727)
Q Consensus 421 ~~~~~~~------~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 493 (727)
+...... .......+ ..+-.+-...+.++++...+.+.+.+ .=.++...-...+.
T Consensus 213 l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~------------------~~~~~~~s~~~~~k 274 (577)
T KOG1258|consen 213 LRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI------------------HEKVYQKSEEEEEK 274 (577)
T ss_pred HhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH------------------HHHHHHhhHhHHHH
Confidence 1000000 00000000 00000000111122222211111111 11222233334444
Q ss_pred HHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCC
Q 004848 494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573 (727)
Q Consensus 494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 573 (727)
+..++..+...-... ....+.....|......-...|+++...-.|++++--+... ...|...+......|+
T Consensus 275 r~~fE~~IkrpYfhv-kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y-------~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 275 RWGFEEGIKRPYFHV-KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY-------DEFWIKYARWMESSGD 346 (577)
T ss_pred HHhhhhhcccccccc-CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh-------HHHHHHHHHHHHHcCc
Confidence 555555544322111 11223344567777777788999999999999998765443 4678888888888899
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 004848 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653 (727)
Q Consensus 574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 653 (727)
.+-|...+..+.++... . ...+...-+......|++..|...++....- .|....+-..-+....
T Consensus 347 ~~~~~~~~~~~~~i~~k----~---~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------~pg~v~~~l~~~~~e~ 411 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVK----K---TPIIHLLEARFEESNGNFDDAKVILQRIESE--------YPGLVEVVLRKINWER 411 (577)
T ss_pred hhHHHHHHHhhhhhcCC----C---CcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--------CCchhhhHHHHHhHHH
Confidence 99999888888876432 1 2234455577788899999999999998876 5777777777777888
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHH-HHHhCChhHHHHHHHHHHHHHhhh
Q 004848 654 AIGRLDDAIEILEFVVGIREEKLGTANPDV-DDEKRRLAEL-LKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 654 ~~g~~~~A~~~~~~al~~~~~~~g~~~p~~-~~~~~~La~~-~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+.|+.+.+... ...+... .-|..++.. ...+...+.. +.-.++.+.|. ..+.++++..|.
T Consensus 412 r~~~~~~~~~~-~~l~s~~--~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~-~~l~~~~~~~~~ 473 (577)
T KOG1258|consen 412 RKGNLEDANYK-NELYSSI--YEGKENNGILEKLYVKFARLRYKIREDADLAR-IILLEANDILPD 473 (577)
T ss_pred HhcchhhhhHH-HHHHHHh--cccccCcchhHHHHHHHHHHHHHHhcCHHHHH-HHHHHhhhcCCc
Confidence 89999988852 2222211 112223332 3344445544 44567888888 889988888775
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.56 E-value=0.0067 Score=38.66 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 004848 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384 (727)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 384 (727)
++..||.+|...|+|++|+.+|++++.+.....
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 578999999999999999999999998776553
No 292
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.43 E-value=0.008 Score=37.69 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 685 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 685 ~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.+++.+|.+|..+|++++|. .+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~-~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEAL-EYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHH-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence 57899999999999999999 999999999983
No 293
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.38 E-value=0.81 Score=48.73 Aligned_cols=220 Identities=15% Similarity=0.115 Sum_probs=124.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-----------HHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH------
Q 004848 395 RRLMGLICETKGDHEAALEHLVLAS-----------MTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK------ 457 (727)
Q Consensus 395 ~~~l~~~~~~~g~~~~A~~~~~~al-----------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------ 457 (727)
|..|+.-....=+++-|.+.|.+.. +..+..+..|.. ..+|.++...|+|.+|.+.|.+
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~----iLlA~~~Ay~gKF~EAAklFk~~G~enR 663 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND----LLLADVFAYQGKFHEAAKLFKRSGHENR 663 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH----HHHHHHHHhhhhHHHHHHHHHHcCchhh
Confidence 5666666666667777777766552 112223333322 3467788888999998888764
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHH
Q 004848 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI 537 (727)
Q Consensus 458 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (727)
|++++. -.-.+.++.-+...|..++-..+.++-.+...... .|. .-|..+...|+.++|+
T Consensus 664 AlEmyT----------DlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k----ePk------aAAEmLiSaGe~~KAi 723 (1081)
T KOG1538|consen 664 ALEMYT----------DLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIK----EPK------AAAEMLISAGEHVKAI 723 (1081)
T ss_pred HHHHHH----------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC----CcH------HHHHHhhcccchhhhh
Confidence 333321 12234556666667776666555555444433321 221 2356667778888877
Q ss_pred HHH------HHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHH
Q 004848 538 KLL------QKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV 611 (727)
Q Consensus 538 ~~~------~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 611 (727)
... +-++++..+... .-...+..++..+.....+.-|.+.|.+.-+. ..+..++.
T Consensus 724 ~i~~d~gW~d~lidI~rkld~---~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------------ksiVqlHv 784 (1081)
T KOG1538|consen 724 EICGDHGWVDMLIDIARKLDK---AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------------KSLVQLHV 784 (1081)
T ss_pred hhhhcccHHHHHHHHHhhcch---hhhhHHHHHHHHHhhccccchHHHHHHHhccH----------------HHHhhhee
Confidence 653 334444333211 11223344455555555555565555543221 12345566
Q ss_pred HhCCHHHHHHHHHHHHHHHHHhcCCCCccHH-HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004848 612 QRYSINEAVELFEEARSILEQECGPYHPDTL-GVYSNLAGTYDAIGRLDDAIEILEFVV 669 (727)
Q Consensus 612 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al 669 (727)
..+++.+|..+.++ +|... .+|+-.|+.+....++++|.+.|.+|=
T Consensus 785 e~~~W~eAFalAe~------------hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 785 ETQRWDEAFALAEK------------HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred ecccchHhHhhhhh------------CccccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 77888888876665 34433 367777888888888888888877654
No 294
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.32 Score=47.02 Aligned_cols=161 Identities=14% Similarity=0.127 Sum_probs=102.9
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhH
Q 004848 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF 599 (727)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 599 (727)
-..-+.-....|++.+|...|..++...++. ..+...++.+|...|+.+.|...+...-.-.. ...
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-------~~~ 202 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPEN-------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-------DKA 202 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCccc-------chHHHHHHHHHHHcCChHHHHHHHHhCcccch-------hhH
Confidence 3345566778899999999999999987766 35677899999999999999888765321110 000
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004848 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (727)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~ 679 (727)
...+.....++.+.....+... +++.+.. +|+...+.+.||..|...|+.++|++.+-..+.. -.|
T Consensus 203 ~~~l~a~i~ll~qaa~~~~~~~-l~~~~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~---d~~-- 268 (304)
T COG3118 203 AHGLQAQIELLEQAAATPEIQD-LQRRLAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRR---DRG-- 268 (304)
T ss_pred HHHHHHHHHHHHHHhcCCCHHH-HHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---ccc--
Confidence 1111111122222222222222 2222222 7888899999999999999999999988776654 222
Q ss_pred ChhHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 004848 680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLET 710 (727)
Q Consensus 680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ 710 (727)
-....+...|-.++...|.-+.+. ..+++
T Consensus 269 -~~d~~~Rk~lle~f~~~g~~Dp~~-~~~RR 297 (304)
T COG3118 269 -FEDGEARKTLLELFEAFGPADPLV-LAYRR 297 (304)
T ss_pred -ccCcHHHHHHHHHHHhcCCCCHHH-HHHHH
Confidence 223445666777777777666555 44433
No 295
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.19 E-value=0.66 Score=46.76 Aligned_cols=170 Identities=18% Similarity=0.125 Sum_probs=117.1
Q ss_pred HHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHHhCCCCc
Q 004848 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAML----GQLENSLMCYTTGLEVQKQVLGETDP 347 (727)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~ 347 (727)
+......+++..|..++..+.... . ......++.+|..- .+..+|+.+|+.+.+.
T Consensus 48 ~~~~~~~~~~~~a~~~~~~a~~~~-------~----~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~---------- 106 (292)
T COG0790 48 GAGSAYPPDYAKALKSYEKAAELG-------D----AAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD---------- 106 (292)
T ss_pred cccccccccHHHHHHHHHHhhhcC-------C----hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----------
Confidence 334456778888999998887632 1 13466777777653 4578899988854433
Q ss_pred hHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-------CHHHHHHHHH
Q 004848 348 RVGETCRYLAEAHVQ----ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG-------DHEAALEHLV 416 (727)
Q Consensus 348 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g-------~~~~A~~~~~ 416 (727)
....+.+.||.+|.. ..++.+|..+|.++........ ..+...++.+|..-. +...|+.+|.
T Consensus 107 g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~ 179 (292)
T COG0790 107 GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYR 179 (292)
T ss_pred ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHH
Confidence 466788889999887 4489999999999987642211 234677777776642 2336888887
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004848 417 LASMTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG 488 (727)
Q Consensus 417 ~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 488 (727)
++.... ...+...+|.+|.. ..++.+|..+|.++.+. .. ....+.++ ++...|
T Consensus 180 ~aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~--------g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 180 KAAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ--------GD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------CC--HHHHHHHH-HHHhcC
Confidence 775421 45677788877755 34899999999999886 22 67777888 666655
No 296
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.13 E-value=0.014 Score=36.55 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004848 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381 (727)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (727)
.+|+.+|.+|...|++++|+.+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5789999999999999999999999999986
No 297
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.06 E-value=1.3 Score=44.68 Aligned_cols=166 Identities=17% Similarity=0.156 Sum_probs=111.4
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHhcCCCCCChHhHHH
Q 004848 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (727)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (727)
...+++..|...+..+... ..+ .....++.+|.. ..+..+|..+|..+... ....
T Consensus 52 ~~~~~~~~a~~~~~~a~~~-------~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~-----------g~~~ 110 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL-------GDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD-----------GLAE 110 (292)
T ss_pred cccccHHHHHHHHHHhhhc-------CCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc-----------ccHH
Confidence 3556777777777766552 112 556667777665 34577888888854443 2345
Q ss_pred HHHHHHHHHHh----cccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHH
Q 004848 519 GLTDVSSIYES----MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG-------NYSDSYDSFKNAISK 587 (727)
Q Consensus 519 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~ 587 (727)
..+.||.+|.. ..++.+|..+|.++...- .... ......++.+|..-. +...|...|.++...
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g-----~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG-----NVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC-----ChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence 67779998887 458999999999998763 2211 234567777776642 233677777777664
Q ss_pred HHHhCCCCchhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 004848 588 LRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (727)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 656 (727)
. ...+...+|.+|.. ..++.+|..+|.+|.+. .. ....+.++ ++...|
T Consensus 185 ~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~--------g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 185 G----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ--------GD--GAACYNLG-LMYLNG 236 (292)
T ss_pred c----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------CC--HHHHHHHH-HHHhcC
Confidence 2 34677888877765 33899999999999886 22 66788888 666666
No 298
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=2.7 Score=45.08 Aligned_cols=105 Identities=15% Similarity=0.212 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCc
Q 004848 222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ 301 (727)
Q Consensus 222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 301 (727)
..+.+.|..+++..+ |..++++|...+..+... .-+...+.....++.||..+.+.+.|.+++++|-+.. +
T Consensus 355 ~iLWn~A~~~F~~~~-Y~~s~~~y~~Sl~~i~~D---~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-----~ 425 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEK-YVVSIRFYKLSLKDIISD---NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-----R 425 (872)
T ss_pred HHHHHhhHHHHHHHH-HHHHHHHHHHHHHhccch---hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-----c
Confidence 456677888888876 999999999999876432 2235568888999999999999999999999998774 3
Q ss_pred cchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004848 302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK 339 (727)
Q Consensus 302 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 339 (727)
..+.. ...+-.+....|.-++|+.+..+......
T Consensus 426 ~~~l~----q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 426 QSPLC----QLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred ccHHH----HHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 33332 34455566778888999998888776643
No 299
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.97 E-value=0.44 Score=49.15 Aligned_cols=171 Identities=13% Similarity=0.041 Sum_probs=108.3
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH--HHHHcCChHHHHHHHHHHHHHH
Q 004848 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD--MYNRTGKLRESKSYCENALRIY 504 (727)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~ 504 (727)
..|....++..++.++..+|++..|.+++++|+-.++... ++........+.. +...-..
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~---~~~F~~~~~~~~~g~~rL~~~~--------------- 96 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAF---HPSFSPFRSNLTSGNCRLDYRR--------------- 96 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH---HHHhhhhhcccccCccccCCcc---------------
Confidence 4678889999999999999999999999999998876554 3332221111111 1111000
Q ss_pred hcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848 505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA 584 (727)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 584 (727)
..+.....++......+.+.|-+..|+++.+-.+.+.+.. ++ ..++..+-....+.++|+--+..++..
T Consensus 97 ------~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~--DP---~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 97 ------PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDE--DP---LGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred ------ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC--Cc---chhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 1123345566677778888899999999998888886542 11 234445555566777777666666654
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHHHHHhCCH---------------HHHHHHHHHHHHH
Q 004848 585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSI---------------NEAVELFEEARSI 629 (727)
Q Consensus 585 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~ 629 (727)
.....+. .-.......+.++.+++..++. +.|...+.+|+..
T Consensus 166 ~~~~~~~---~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 166 LAKCYRN---WLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred hhhhhhh---hhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence 4321000 0000123455667777777777 8999999999987
No 300
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.92 E-value=0.007 Score=61.85 Aligned_cols=96 Identities=14% Similarity=0.148 Sum_probs=87.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004848 605 QMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVD 684 (727)
Q Consensus 605 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~ 684 (727)
.-+.-.+.-+.++.|+.+|.+|+++ +|..+..+.+.+.++.+.+++..|+.-+.+|+++ +|...
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~~ 72 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTYI 72 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchhh
Confidence 3456667778999999999999999 9999988889999999999999999999999986 69999
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 685 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 685 ~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.+|++-|.+..+.+++.+|+ ..|+....+.|+
T Consensus 73 K~Y~rrg~a~m~l~~~~~A~-~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 73 KAYVRRGTAVMALGEFKKAL-LDLEKVKKLAPN 104 (476)
T ss_pred heeeeccHHHHhHHHHHHHH-HHHHHhhhcCcC
Confidence 99999999999999999999 999999998886
No 301
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=1.8 Score=43.73 Aligned_cols=141 Identities=16% Similarity=0.111 Sum_probs=96.3
Q ss_pred HHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 004848 276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY 355 (727)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 355 (727)
+...++.+|...-+..+.-........-......+|+.+..+|...|+...-...+...+... .++.+....+...+.
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavLiN~ 214 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVLINL 214 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHHHHH
Confidence 445788888887776554321111111113345668888899999999777666666655543 334444556667778
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM 422 (727)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 422 (727)
|-..|...+.|+.|..+..+.. .|... .....+..++.+|.+..-+++|..|.++|.+|+...
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~--~pe~~--snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSV--YPEAA--SNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhccc--Ccccc--ccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 8888999999999988876653 12211 223567788999999999999999999999987643
No 302
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.88 E-value=0.005 Score=59.94 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=80.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHH
Q 004848 565 GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV 644 (727)
Q Consensus 565 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 644 (727)
+.-.+..|.+++|++.|..++.+ ++..+..+...+.+++++++...|+.-+..|+++ +|+...-
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~ 184 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKG 184 (377)
T ss_pred HHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccc
Confidence 34445678899999999999886 3446788889999999999999999999999999 8999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 645 YSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 645 ~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
|-..+.+...+|+|++|...+..+.++
T Consensus 185 ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 185 YKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 999999999999999999999999986
No 303
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.87 E-value=4.9 Score=46.69 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=63.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc----C---ChhHHHHHHHHhcccchhccCcc
Q 004848 230 ELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSL----G---QYNEAIPVLEQSIEIPVIEEGQE 302 (727)
Q Consensus 230 ~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~~~~~~~~ 302 (727)
++..... |++|+..|++....++.. .+-..+.+.+|.....+ | .+++|+.-|++.-.- +.
T Consensus 484 ~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 550 (932)
T PRK13184 484 AFLAEKL-YDQALIFYRRIRESFPGR------KEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG------VG 550 (932)
T ss_pred HHHhhHH-HHHHHHHHHHHhhcCCCc------ccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC------CC
Confidence 3444432 555555555554443211 22345667777776543 2 356666666654432 33
Q ss_pred chHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHH
Q 004848 303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC 353 (727)
Q Consensus 303 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 353 (727)
.|.. |...|.+|..+|+|++-+++|.-|++.+.+ +|......
T Consensus 551 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 592 (932)
T PRK13184 551 APLE----YLGKALVYQRLGEYNEEIKSLLLALKRYSQ-----HPEISRLR 592 (932)
T ss_pred CchH----HHhHHHHHHHhhhHHHHHHHHHHHHHhcCC-----CCccHHHH
Confidence 3333 888999999999999999999999998755 66655443
No 304
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.86 E-value=2.9 Score=43.96 Aligned_cols=213 Identities=16% Similarity=0.133 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHhCCC
Q 004848 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN---ELEQAIKLLQKALKIYNDAPG 552 (727)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~ 552 (727)
.+...+.++...|+...|...-.++..+++....+. .......++.++..-...- +++.-..++++++.+....+
T Consensus 288 yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l-~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~- 365 (656)
T KOG1914|consen 288 YLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL-LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL- 365 (656)
T ss_pred HHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-
Confidence 334455566666665555444444444433321000 1112233333333222222 25566667777776654332
Q ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848 553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (727)
Q Consensus 553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (727)
..++..+-..-.+..-...|...|.+|-+.-+ . .+...+...+- -|...++..-|...|+-.++.
T Consensus 366 -----tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r----~--~hhVfVa~A~m-Ey~cskD~~~AfrIFeLGLkk--- 430 (656)
T KOG1914|consen 366 -----TLVYCQYMNFIRRAEGLKAARKIFKKAREDKR----T--RHHVFVAAALM-EYYCSKDKETAFRIFELGLKK--- 430 (656)
T ss_pred -----ceehhHHHHHHHHhhhHHHHHHHHHHHhhccC----C--cchhhHHHHHH-HHHhcCChhHHHHHHHHHHHh---
Confidence 12344444555555556777778877765311 1 11112222222 245578999999999999988
Q ss_pred hcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 004848 633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLL 712 (727)
Q Consensus 633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al 712 (727)
+++....-......+...++-..|..+|++++.. .+ ........|...-..-..-|+....+ +.-++-.
T Consensus 431 -----f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s---~l--~~~ks~~Iw~r~l~yES~vGdL~si~-~lekR~~ 499 (656)
T KOG1914|consen 431 -----FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS---VL--SADKSKEIWDRMLEYESNVGDLNSIL-KLEKRRF 499 (656)
T ss_pred -----cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc---cC--ChhhhHHHHHHHHHHHHhcccHHHHH-HHHHHHH
Confidence 5555555566667788899999999999999864 11 12234456666666666778877776 5555544
Q ss_pred HHhh
Q 004848 713 DANS 716 (727)
Q Consensus 713 ~~~p 716 (727)
...|
T Consensus 500 ~af~ 503 (656)
T KOG1914|consen 500 TAFP 503 (656)
T ss_pred Hhcc
Confidence 4444
No 305
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.85 E-value=0.39 Score=49.54 Aligned_cols=162 Identities=15% Similarity=0.006 Sum_probs=117.8
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh----c-----C---C--------CCCHHHHHHHH
Q 004848 210 VSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIG----A-----N---G--------KPSLELVMCLH 269 (727)
Q Consensus 210 ~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~----~-----~---~--------~~~~~~~~~~~ 269 (727)
+......+|-..+.|+.++.++...|+ +..|-++.++|+-.+++. . . + ..+.....+++
T Consensus 29 l~~ll~~~PyHidtLlqls~v~~~~gd-~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~ 107 (360)
T PF04910_consen 29 LINLLQKNPYHIDTLLQLSEVYRQQGD-HAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALF 107 (360)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHH
Confidence 344557789999999999999999997 999999999999888743 1 1 0 01245566778
Q ss_pred HHHHHHHHcCChhHHHHHHHHhcccchhccCcc-chHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCch
Q 004848 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE-HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR 348 (727)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 348 (727)
.....+.+.|-+..|.++.+-.+.+. +. +|.. +++.+-....+.++|+--+..++.......+. ....
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLd-----p~~DP~g---~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~ 176 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLD-----PDEDPLG---VLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSL 176 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcC-----CCCCcch---hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhh
Confidence 88888999999999999999999986 33 5432 35556666667788877777777655421000 0011
Q ss_pred HHHHHHHHHHHHHHhcCH---------------HHHHHHHHHHHHHHHhc
Q 004848 349 VGETCRYLAEAHVQALQF---------------SEAQKFCQMALDIHKDN 383 (727)
Q Consensus 349 ~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~~~~ 383 (727)
.+...+.++.+++..++- +.|...+.+|+...|..
T Consensus 177 lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 177 LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 234566777788888887 89999999999988754
No 306
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.85 E-value=0.0029 Score=61.53 Aligned_cols=93 Identities=18% Similarity=0.237 Sum_probs=85.0
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004848 608 LACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK 687 (727)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~ 687 (727)
.-.+..|.+++|+++|..++++ +|..+..|...+.++.++++...|+.-+..++++ +|+.+..|
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~y 185 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGY 185 (377)
T ss_pred HHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Cccccccc
Confidence 3345678899999999999999 9999999999999999999999999999999987 78999999
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 688 RRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 688 ~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
...+.....+|+|++|. +.|+.+.+++-.
T Consensus 186 kfrg~A~rllg~~e~aa-~dl~~a~kld~d 214 (377)
T KOG1308|consen 186 KFRGYAERLLGNWEEAA-HDLALACKLDYD 214 (377)
T ss_pred chhhHHHHHhhchHHHH-HHHHHHHhcccc
Confidence 99999999999999999 999999988755
No 307
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.78 E-value=0.012 Score=60.21 Aligned_cols=109 Identities=18% Similarity=0.170 Sum_probs=92.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccH
Q 004848 562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT 641 (727)
Q Consensus 562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 641 (727)
-.-+.-.+.-+.|+.|+..|.+|+++ .+..+..+.+.+.++++.+++..|+.-+.+|++. +|..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~ 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence 34566777889999999999999997 3445667778889999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004848 642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694 (727)
Q Consensus 642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~ 694 (727)
..+|+..|.++...+.+.+|+..|+....+ .|+...+...+.++-
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l--------~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKL--------APNDPDATRKIDECN 116 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhc--------CcCcHHHHHHHHHHH
Confidence 999999999999999999999999998876 466666666666553
No 308
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.76 E-value=2.8 Score=42.99 Aligned_cols=436 Identities=9% Similarity=-0.048 Sum_probs=218.4
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 004848 210 VSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLE 289 (727)
Q Consensus 210 ~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 289 (727)
+.+...++|.+...|+.+...+-..|. +++-.+.|++...- -|-...+|...-.--....+|.....+|-
T Consensus 31 LRerIkdNPtnI~S~fqLiq~~~tq~s-~~~~re~yeq~~~p---------fp~~~~aw~ly~s~ELA~~df~svE~lf~ 100 (660)
T COG5107 31 LRERIKDNPTNILSYFQLIQYLETQES-MDAEREMYEQLSSP---------FPIMEHAWRLYMSGELARKDFRSVESLFG 100 (660)
T ss_pred HHHHhhcCchhHHHHHHHHHHHhhhhh-HHHHHHHHHHhcCC---------CccccHHHHHHhcchhhhhhHHHHHHHHH
Confidence 445677899999999999999988887 88877877776542 23333333332223334578888888888
Q ss_pred HhcccchhccCccchHHHHHHHHHHHHHHHHhCC-H--HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH-----
Q 004848 290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQ-L--ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV----- 361 (727)
Q Consensus 290 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----- 361 (727)
+++.-.- .+..|... .-|.+.-+ . -++.....+|.+......+ -+|.....|...+..+.
T Consensus 101 rCL~k~l----------~ldLW~lY-l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~-~e~~s~~~W~ey~~fle~~~~~ 168 (660)
T COG5107 101 RCLKKSL----------NLDLWMLY-LEYIRRVNNLITGQKRFKIYEAYEFVLGCAI-FEPQSENYWDEYGLFLEYIEEL 168 (660)
T ss_pred HHHhhhc----------cHhHHHHH-HHHHHhhCcccccchhhhhHHHHHHHHhccc-ccccccchHHHHHHHHHhcccc
Confidence 8876531 11112211 11222111 0 0333333333333222100 13444444444444332
Q ss_pred ----HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---------HHHHHHcC----CHHHHHHHHHHHHHHHHh
Q 004848 362 ----QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM---------GLICETKG----DHEAALEHLVLASMTMIA 424 (727)
Q Consensus 362 ----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l---------~~~~~~~g----~~~~A~~~~~~al~~~~~ 424 (727)
.+.+.+.-...|.+++..--.+. . ..|... +..---.| -|-.|...|++...+...
T Consensus 169 ~kwEeQqrid~iR~~Y~ral~tP~~nl-----e--klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~G 241 (660)
T COG5107 169 GKWEEQQRIDKIRNGYMRALQTPMGNL-----E--KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRG 241 (660)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCccccH-----H--HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhcc
Confidence 33345555666666664321110 0 001110 00001111 244555555554433221
Q ss_pred CCC-ChhHHHH-----------HHHHHHHHH-----HcCC-HHHHH-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004848 425 NDQ-DAEVASV-----------DCSIGDTYL-----SLSR-YDEAG-FAYQKALTAFKTNKGENHPAVASVFVRLADMYN 485 (727)
Q Consensus 425 ~~~-~~~~~~~-----------~~~la~~~~-----~~g~-~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 485 (727)
... +|..... |.+.-..-. ..|+ ..+-+ -.+++++.. -+....+|+.....+.
T Consensus 242 l~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y--------~~~~~evw~dys~Y~~ 313 (660)
T COG5107 242 LSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY--------FYYAEEVWFDYSEYLI 313 (660)
T ss_pred ccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH--------hhhhHHHHHHHHHHHh
Confidence 110 1111111 111111110 0111 11211 224445544 4666677777777777
Q ss_pred HcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC------------CC
Q 004848 486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP------------GQ 553 (727)
Q Consensus 486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~ 553 (727)
..++-+.|+...++++... |. ....++.+|....+-+.-..+|+++.+...... +.
T Consensus 314 ~isd~q~al~tv~rg~~~s---------ps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N 381 (660)
T COG5107 314 GISDKQKALKTVERGIEMS---------PS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNN 381 (660)
T ss_pred hccHHHHHHHHHHhcccCC---------Cc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCC
Confidence 8888888888777766552 11 345677777777776666666666655432210 00
Q ss_pred Ccc-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-HHHHHhCCHHHHHH
Q 004848 554 QST-----------VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG-LACVQRYSINEAVE 621 (727)
Q Consensus 554 ~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~ 621 (727)
... +..+++.+-..-.+..-.+.|..+|-++-+ .+-..+ .+|..-| .-+...|++.-|..
T Consensus 382 ~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk----~~~~~h----~vyi~~A~~E~~~~~d~~ta~~ 453 (660)
T COG5107 382 FEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRK----EGIVGH----HVYIYCAFIEYYATGDRATAYN 453 (660)
T ss_pred ccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhc----cCCCCc----ceeeeHHHHHHHhcCCcchHHH
Confidence 100 011111122222223334455555555433 221111 1222222 23456789999999
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChh
Q 004848 622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVR 701 (727)
Q Consensus 622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~ 701 (727)
.|+-.+.. +|+........-..+...++-..|..+|+.++...+. ......|..+...-..-|+..
T Consensus 454 ifelGl~~--------f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~------~q~k~iy~kmi~YEs~~G~lN 519 (660)
T COG5107 454 IFELGLLK--------FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEK------TQLKRIYDKMIEYESMVGSLN 519 (660)
T ss_pred HHHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH------hhhhHHHHHHHHHHHhhcchH
Confidence 99998887 6666544455556677889999999999998865432 133445555555556667776
Q ss_pred HHHHHHHHHHHHHhhh
Q 004848 702 SRKAQSLETLLDANSR 717 (727)
Q Consensus 702 ~A~~~~l~~al~~~p~ 717 (727)
.+. ..=+...++.|+
T Consensus 520 ~v~-sLe~rf~e~~pQ 534 (660)
T COG5107 520 NVY-SLEERFRELVPQ 534 (660)
T ss_pred HHH-hHHHHHHHHcCc
Confidence 666 555555555554
No 309
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.71 E-value=0.018 Score=35.62 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 685 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 685 ~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
++++.+|.++...|++++|+ ..|+++++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~-~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAI-EYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHH-HHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHH-HHHHHHHHHCcC
Confidence 46889999999999999999 999999999885
No 310
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.65 E-value=2.4 Score=41.38 Aligned_cols=221 Identities=13% Similarity=-0.019 Sum_probs=125.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHH-HHHHHHHHHcCChhHHHHHHHHhcccchhccCc
Q 004848 224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLE-LVMCL-HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ 301 (727)
Q Consensus 224 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~-~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 301 (727)
-+.+.++++..|+ +..|+..|++=+..+........... ....+ ..++.- |.---++++++..........
T Consensus 13 ~~ki~rl~l~~~~-~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq------~~~fAeL~~~~~~~~l~~~~~ 85 (247)
T PF11817_consen 13 AFKICRLYLWLNQ-PTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQ------YQVFAELLEEAPISGLTPPST 85 (247)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHH------HHHHHHHHHhcccccCCCCCC
Confidence 3677888999997 99999999998888877754322111 11111 222222 333334555554322111122
Q ss_pred cchHHHHHHHHHHHHHHHHhCCHHHHHHHH---H--HHHHHHHHHhCC----CCchHHHHHHHHHHHHHHhcCHHHHHHH
Q 004848 302 EHALAKFAGHMQLGDTYAMLGQLENSLMCY---T--TGLEVQKQVLGE----TDPRVGETCRYLAEAHVQALQFSEAQKF 372 (727)
Q Consensus 302 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~---~--~al~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~ 372 (727)
.+|- .|+..+..+... +...|.... . .+-.+....++. ..+.....+............-...+.+
T Consensus 86 ~~pG----~yy~~AA~~~~~-Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~l 160 (247)
T PF11817_consen 86 QHPG----FYYQIAAKHAVE-RRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIEL 160 (247)
T ss_pred CCcc----hHHHHHHHHHHH-HHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHH
Confidence 2221 144444333321 111111111 0 000000000000 0111111222221111222344567888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 004848 373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAG 452 (727)
Q Consensus 373 ~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 452 (727)
+.+|+..+..... ..........+|..|+..|++++|+.+|+.+...++..+-......++..+..|+...|+.+..+
T Consensus 161 L~~A~~~f~~~~~--~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l 238 (247)
T PF11817_consen 161 LEKAYEQFKKYGQ--NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYL 238 (247)
T ss_pred HHHHHHHHHHhcc--chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 8888888876654 23344567789999999999999999999998888888888888889999999999999999888
Q ss_pred HHHHHH
Q 004848 453 FAYQKA 458 (727)
Q Consensus 453 ~~~~~a 458 (727)
.+.-+.
T Consensus 239 ~~~leL 244 (247)
T PF11817_consen 239 TTSLEL 244 (247)
T ss_pred HHHHHH
Confidence 775544
No 311
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=2.7 Score=42.50 Aligned_cols=151 Identities=11% Similarity=0.046 Sum_probs=100.3
Q ss_pred HHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccc
Q 004848 225 LKQAREL-ISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH 303 (727)
Q Consensus 225 ~~~a~~~-~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 303 (727)
..++..+ +...+ +.+|..+-...+.-........-+.-.+.+|+.+..+|-..|+...-...+...+....- + .+
T Consensus 129 ~lLv~Lfl~d~K~-~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL--r-hd 204 (493)
T KOG2581|consen 129 YLLVLLFLIDQKE-YKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATL--R-HD 204 (493)
T ss_pred HHHHHHHHHhhHH-HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh--c-Cc
Confidence 3344333 33444 888888877665543222111222345677888888899999988777777766655321 1 11
Q ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004848 304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383 (727)
Q Consensus 304 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 383 (727)
........+.|-+.|...+.|+.|.....+..--. ...+...+..++++|.+..-+++|..|.+++.+|+...|..
T Consensus 205 ~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe----~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 205 EEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPE----AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCcc----ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 22334456677888899999999888776654110 01123677888999999999999999999999999988863
No 312
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=95.56 E-value=2.4 Score=40.84 Aligned_cols=185 Identities=17% Similarity=0.157 Sum_probs=104.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHhCCCCCc
Q 004848 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE-SMNELEQAIKLLQKALKIYNDAPGQQS 555 (727)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~ 555 (727)
+..+|.+....|+|++.+.++++++...... ...-.+.++.+|- ..|....+...+.......... +...
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eL--------t~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~-~~~~ 74 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPEL--------TEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENK-GNEK 74 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TTHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCC--------CHHHHHHHHHHHHhccccchHHHHhhhhHhhhhccc-chhH
Confidence 5678999999999999999999999882221 1222333444442 2344444555444443333222 1111
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHHHHH-----hC-----CHHHHHHH
Q 004848 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE---RKSAFFGVALNQMGLACVQ-----RY-----SINEAVEL 622 (727)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~-----~g-----~~~~A~~~ 622 (727)
.. .+..-|. ..=-++=......++.+.....- .........+-..|..|.- .| -.+.|...
T Consensus 75 ~~-----~~i~~yk-~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~a 148 (236)
T PF00244_consen 75 QV-----KLIKDYK-KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEA 148 (236)
T ss_dssp HH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHh
Confidence 11 0111110 00112223344445554443211 1111122223333444431 11 24789999
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhc
Q 004848 623 FEEARSILEQECGPYHPDTLGVYSNLAGTYD-AIGRLDDAIEILEFVVGIREEKL 676 (727)
Q Consensus 623 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~ 676 (727)
|++|+.++.....+.+|-......+.+..|. -+|+.++|+...++++.-....+
T Consensus 149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l 203 (236)
T PF00244_consen 149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISEL 203 (236)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGG
T ss_pred hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Confidence 9999999999888889999888888888774 48999999999999987665443
No 313
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=4.6 Score=43.39 Aligned_cols=106 Identities=17% Similarity=0.096 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC
Q 004848 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345 (727)
Q Consensus 266 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 345 (727)
..+.+-|.-.++..+|..++++|...+.... .+............++.||..+.+.+.|.+++++|-+.
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~---~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~-------- 423 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDII---SDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV-------- 423 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc---chhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------
Confidence 3456668888999999999999999887642 12222333566889999999999999999999999888
Q ss_pred CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004848 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (727)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (727)
+|.........-.+....+.-++|+.+..........
T Consensus 424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 6777777777777778889999999998887766543
No 314
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.45 E-value=5.5 Score=44.25 Aligned_cols=437 Identities=11% Similarity=-0.013 Sum_probs=205.2
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH-HHcCChhHHHHH
Q 004848 209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY-CSLGQYNEAIPV 287 (727)
Q Consensus 209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~ 287 (727)
.+.+....++.....+..+...+...|+ +++-...-.+ +..+.... |..+.-|.. ..++ -..+.-.++...
T Consensus 101 t~~ee~ai~~y~~~~~v~Li~llrk~~d-l~kl~~ar~~----~~~~~pl~--~~lWl~Wl~-d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 101 TLEEELAINSYKYAQMVQLIGLLRKLGD-LEKLRQARLE----MSEIAPLP--PHLWLEWLK-DELSMTQSEERKEVEEL 172 (881)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHhcc-hHHHHHHHHH----HHHhcCCC--hHHHHHHHH-HHHhhccCcchhHHHHH
Confidence 3344445566666677777888888887 6554333333 33332222 333332322 2222 234777888999
Q ss_pred HHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHH
Q 004848 288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFS 367 (727)
Q Consensus 288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 367 (727)
|++++.-... .......+......+..+...++++.-...|.+++...-.... ........+..+-..|...-..+
T Consensus 173 ~ekal~dy~~---v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~ 248 (881)
T KOG0128|consen 173 FEKALGDYNS---VPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVTYLCNVEQR 248 (881)
T ss_pred HHHHhccccc---chHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHHHHhHHHH
Confidence 9999865311 0000111112233334455667888889999999887533222 12345556666666666666666
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH--H-HHHHcCCHHHHHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHH
Q 004848 368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMG--L-ICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYL 443 (727)
Q Consensus 368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~--~-~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~ 443 (727)
+-+.++...+...-.. -.....|.... . ......+++.|+.-+.+.+..+.. ....+.....|..+-....
T Consensus 249 qv~a~~~~el~~~~D~-----~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~ 323 (881)
T KOG0128|consen 249 QVIALFVRELKQPLDE-----DTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEK 323 (881)
T ss_pred HHHHHHHHHHhccchh-----hhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 7777777766654111 00111122221 1 112233455554444333322211 1112333334444445555
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHH
Q 004848 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN-RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD 522 (727)
Q Consensus 444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 522 (727)
..|+.-.-...+++++.- .+.....|...+...- .++-.+.+...+-+++.. .+..... ..
T Consensus 324 ~~G~p~ri~l~~eR~~~E--------~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~---------cp~tgdL-~~ 385 (881)
T KOG0128|consen 324 KSGDPVRIQLIEERAVAE--------MVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRS---------CPWTGDL-WK 385 (881)
T ss_pred hcCCchHHHHHHHHHHHh--------ccccHHHHhhhhhhcccccccccccccccchhhcC---------CchHHHH-HH
Confidence 566655555555555443 1222233333322211 111122222222222222 1111111 11
Q ss_pred HHHHHHhccc--HHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHhCC
Q 004848 523 VSSIYESMNE--LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM-------LGNYSDSYDSFKNAISKLRAIGE 593 (727)
Q Consensus 523 la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~~A~~~~~~al~~~~~~~~ 593 (727)
.+.+.+..++ ...-...+.+++...- .+++....|++ ..+++.-.+.|+.|...+.....
T Consensus 386 rallAleR~re~~~vI~~~l~~~ls~~~-----------~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~ 454 (881)
T KOG0128|consen 386 RALLALERNREEITVIVQNLEKDLSMTV-----------ELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYG 454 (881)
T ss_pred HHHHHHHhcCcchhhHHHHHHHHHHHHH-----------HHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhh
Confidence 1111111111 1111122222222100 01111111111 12344445556666665555433
Q ss_pred CCchhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848 594 RKSAFFGVALNQMGLACVQ-RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (727)
Q Consensus 594 ~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (727)
.........+...|.++.. +++.+.|+.++...+.. ........|+....+-...|+...|..++++|+.-
T Consensus 455 ~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty-------~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~- 526 (881)
T KOG0128|consen 455 DQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTY-------GGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ- 526 (881)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccC-------CcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc-
Confidence 3222234555556665553 45677777777665543 12334446777777777889999999988888754
Q ss_pred HHhcCCCChh-HHHHHHHHHHHHHHhCChhHHH
Q 004848 673 EEKLGTANPD-VDDEKRRLAELLKEAGRVRSRK 704 (727)
Q Consensus 673 ~~~~g~~~p~-~~~~~~~La~~~~~~g~~~~A~ 704 (727)
...|+ ...++..+-.+....|.++...
T Consensus 527 -----~~~~~~~~ev~~~~~r~Ere~gtl~~~~ 554 (881)
T KOG0128|consen 527 -----VVDPEDALEVLEFFRRFEREYGTLESFD 554 (881)
T ss_pred -----CcCchhHHHHHHHHHHHHhccccHHHHh
Confidence 23443 4556666666666777777666
No 315
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.36 E-value=3 Score=40.67 Aligned_cols=187 Identities=14% Similarity=0.035 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC---CC-------HHHHHHHHHHHHHHHHcC--------------C
Q 004848 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP---AS-------LEEAADRRLMGLICETKG--------------D 407 (727)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~-------~~~a~~~~~l~~~~~~~g--------------~ 407 (727)
+.+.+..+++..|+..+|+.-+++=+....+..+. .. ...+.-+..+|.+..... -
T Consensus 12 i~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~y 91 (247)
T PF11817_consen 12 IAFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFY 91 (247)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchH
Confidence 34556788889999999999998888877655443 11 223333445555554432 1
Q ss_pred HHHHHHHHHHHHHHHHhCCCChh----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004848 408 HEAALEHLVLASMTMIANDQDAE----------------------VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (727)
Q Consensus 408 ~~~A~~~~~~al~~~~~~~~~~~----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (727)
|..|-.+...-...+......|. ....+................+.++.+|+..++..
T Consensus 92 y~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~ 171 (247)
T PF11817_consen 92 YQIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY 171 (247)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh
Confidence 23333333222222222210000 00111111111112234456788888998888776
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 004848 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA 543 (727)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (727)
.. ......+...+|..|+..|++++|+.+|+.+...+++. .-......++..+..++...|+.+..+.+.-+.
T Consensus 172 ~~--~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e---gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 172 GQ--NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE---GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred cc--chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 52 44556677899999999999999999999998888763 334456778888999999999988877665443
No 316
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=3.9 Score=41.83 Aligned_cols=197 Identities=12% Similarity=-0.012 Sum_probs=138.0
Q ss_pred hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004848 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (727)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (727)
.....+..+..+.++....++..|..++.+..-..... ........++..++.++.+.+..-.+..+.-.++....+..
T Consensus 269 ~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~-~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ 347 (482)
T KOG4322|consen 269 YQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKG-CNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYS 347 (482)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhc
Confidence 44456777889999999999999999998877554332 23335566777888888888888888887777777665543
Q ss_pred CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH------HHcCChHHHHHHHH
Q 004848 593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY------DAIGRLDDAIEILE 666 (727)
Q Consensus 593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~------~~~g~~~~A~~~~~ 666 (727)
-. ...+.+-..++..+...|..+.|+..+..++.......+-+ +.+.+++-.+.|+ ....+.+.+..+++
T Consensus 348 ld--yl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~--drara~fvfanC~lA~a~s~~~e~ld~~~~~L~ 423 (482)
T KOG4322|consen 348 LD--YLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLD--DRARAIFVFANCTLAFALSCANESLDGFPRYLD 423 (482)
T ss_pred cc--hhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchh--hcceeEEEEEeeeecchhhhhhhhHHhhHHHHH
Confidence 32 22345566788888899999999999999998866554421 1122222222222 14557788888889
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHH--HHHHHHHHHhh
Q 004848 667 FVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKA--QSLETLLDANS 716 (727)
Q Consensus 667 ~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~--~~l~~al~~~p 716 (727)
+|-.++.++ ..|....++.+-++..|...|+.++-.. -.|++++.--|
T Consensus 424 ~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~~le 473 (482)
T KOG4322|consen 424 LAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWRYLE 473 (482)
T ss_pred HHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcC
Confidence 888888776 5577788999999999999999875430 44555555443
No 317
>PRK14707 hypothetical protein; Provisional
Probab=95.29 E-value=6 Score=48.69 Aligned_cols=366 Identities=9% Similarity=0.003 Sum_probs=190.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004848 312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET--CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389 (727)
Q Consensus 312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 389 (727)
..+++++..+.+|.++..+-..+..+...+..+ +....+ -..++.++-..++|.+...+-.-++.+..........
T Consensus 835 Q~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e--~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~L 912 (2710)
T PRK14707 835 QHVATVLNAMSKWPDNAVCAAAAGAMAERLADE--PELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPEL 912 (2710)
T ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHhcC--hhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHH
Confidence 467888888888887777777776666554322 222222 2445667777777777666666666666555433333
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004848 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD--CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG 467 (727)
Q Consensus 390 ~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 467 (727)
..+..-..++.++..+.+|.++-.+-.-+..+......++.....+ ..++.++..+++|.+.-.+-.-+..+...+-.
T Consensus 913 rqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~ 992 (2710)
T PRK14707 913 RKALSAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVD 992 (2710)
T ss_pred HhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhc
Confidence 3333445567777777777665544444444444444444433332 34667777788887766665555555544321
Q ss_pred CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhH--HHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 004848 468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI--ASGLTDVSSIYESMNELEQAIKLLQKALK 545 (727)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (727)
+..-.....-..++.++..+.++.++-.+-.-+..+...+. . .+.. ..--..++.++....++.+.-.+-.-+..
T Consensus 993 ~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa-~--ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~a 1069 (2710)
T PRK14707 993 EPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS-N--DPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASA 1069 (2710)
T ss_pred cHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc-c--CHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHH
Confidence 11111222334567777777777766655555555554431 1 1111 11223455666666665544333333333
Q ss_pred HHHhCCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004848 546 IYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFE 624 (727)
Q Consensus 546 ~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 624 (727)
+......... ..+..-..++.++...-+|.+.-.+-.-++.+...++.........-...++.+.-...++.....+=.
T Consensus 1070 LA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~cr~ 1149 (2710)
T PRK14707 1070 LAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQACES 1149 (2710)
T ss_pred HHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHHHH
Confidence 3332211111 001112356667777778888777777788877777655444333333344444444444333222222
Q ss_pred HHHHHHHHhcCCCCccHHH--HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004848 625 EARSILEQECGPYHPDTLG--VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVD 684 (727)
Q Consensus 625 ~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~ 684 (727)
-+..+..++.. +++... .-..++..+-...+|.+.-.+-+-++.+........+|...
T Consensus 1150 Aa~~LA~RL~~--d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac~~A~~~La~rlG~a~~P~r~ 1209 (2710)
T PRK14707 1150 AIDVLAATLAN--APGLRNALSAQGVAIALNALSKCLARPVCRSAFVLLAERAGSAELPWRQ 1209 (2710)
T ss_pred HHHHHHHHhcc--chhhhhhcCHHHHHHHHHHhhcCcCcHHHHHHHHHHHHhhcCCCCCchh
Confidence 22333333222 222211 12345555666666666666656566665555445555443
No 318
>PRK14707 hypothetical protein; Provisional
Probab=95.17 E-value=12 Score=46.48 Aligned_cols=360 Identities=9% Similarity=0.022 Sum_probs=186.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHH--HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004848 312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC--RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389 (727)
Q Consensus 312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 389 (727)
..++.++-.+.+|.+...+-.-+..+...+.. ++.....+ ..++.++-...+|..+..+-..+..+..........
T Consensus 793 Q~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~--dp~Lr~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~~L 870 (2710)
T PRK14707 793 REMTNALNALSKWPDTPACAAAASALAARVAD--DPRLREAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAERLADEPEL 870 (2710)
T ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHHhc--ChhHHHhcCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcChhh
Confidence 34666677777777766666666666655432 23333332 456677777777776666666665555444332222
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004848 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD--CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG 467 (727)
Q Consensus 390 ~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 467 (727)
..+..-..++.++..++++.+...+-.-+..+......++.....+ ..++.++-.+.+|.++-.+-.-+..+...+..
T Consensus 871 R~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~ 950 (2710)
T PRK14707 871 RHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPELRKALSAHRVATALNALSKWPDIPVCATAASALAERLSD 950 (2710)
T ss_pred hhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhcc
Confidence 2222234466677777777766666555555555444444443332 45677777777777765555555555554432
Q ss_pred CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q 004848 468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (727)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (727)
+..-.....-..++.++..++++.+.-.+-.-+..+...+.. +..-.....-..+++++..+.++.++-.+-.-+..+.
T Consensus 951 d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~-~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA 1029 (2710)
T PRK14707 951 DPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVD-EPALRNALDPIGMANALNALSKWLQMPVCAATVEALA 1029 (2710)
T ss_pred ChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhc-cHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHH
Confidence 211122333345677788888887766666666555444211 0000111223345666666666655544444455544
Q ss_pred HhCCCCCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004848 548 NDAPGQQST-VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA 626 (727)
Q Consensus 548 ~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 626 (727)
......... .+.--..++.++-...+|.+.-.+-.-+..+...+.....-..+..-..++.++-..-++-+.-.+-+.+
T Consensus 1030 ~rLa~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa 1109 (2710)
T PRK14707 1030 ARLSNDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAA 1109 (2710)
T ss_pred HHhccCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHH
Confidence 443222110 1111235667777777777666555555555444333221111222233444555555666666666666
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004848 627 RSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE 674 (727)
Q Consensus 627 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 674 (727)
+.+...+....++....-...++.++....+|...-.+-.-+..+..+
T Consensus 1110 ~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~cr~Aa~~LA~R 1157 (2710)
T PRK14707 1110 SALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQACESAIDVLAAT 1157 (2710)
T ss_pred HHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 666666554333333333445555555555554443333333333333
No 319
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.99 E-value=0.11 Score=39.04 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccc
Q 004848 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP 295 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 295 (727)
.+...+..|.-++...+ .++|+..+.+|++... ..++...++-.+..+|+..|+|.+++.+.-+-+.+.
T Consensus 5 ~ak~~ie~GlkLY~~~~-~~~Al~~W~~aL~k~~------~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A 73 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNE-TQQALQKWRKALEKIT------DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIA 73 (80)
T ss_pred HHHHHHHHHHHHhccch-HHHHHHHHHHHHhhcC------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888898886 8999999999998642 236778888999999999999999999887766664
No 320
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.96 E-value=0.034 Score=34.37 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004848 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (727)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (727)
++++.+|.++...|++++|+..|+++++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 46889999999999999999999999988764
No 321
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.95 E-value=2.9 Score=42.57 Aligned_cols=148 Identities=8% Similarity=-0.002 Sum_probs=100.5
Q ss_pred CCChhHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004848 426 DQDAEVASVDCSIGDTYLSLSR------------YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES 493 (727)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 493 (727)
..+|....+|..+....-..-. .+.-+.+|++|++. +|.....+..+-.+..+..+.++.
T Consensus 13 ~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 13 RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3566666677666655443322 34556677777776 677777777777777788888888
Q ss_pred HHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCC-----------ccHHHHHH
Q 004848 494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-----------STVAGIEA 562 (727)
Q Consensus 494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------~~~~~~~~ 562 (727)
..-+++++... ...+.+...|...-......-.+......|.+++.......... ..+..++.
T Consensus 85 ~~~we~~l~~~------~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~ 158 (321)
T PF08424_consen 85 AKKWEELLFKN------PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFL 158 (321)
T ss_pred HHHHHHHHHHC------CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence 88888888872 22333444444333333444568889999999998776543321 24556677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848 563 QMGVMYYMLGNYSDSYDSFKNAISK 587 (727)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~ 587 (727)
.+.......|..+.|+..++-.+++
T Consensus 159 r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 159 RLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHCCchHHHHHHHHHHHHH
Confidence 8888889999999999999998886
No 322
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=3 Score=40.15 Aligned_cols=133 Identities=14% Similarity=0.089 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004848 409 EAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG 488 (727)
Q Consensus 409 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 488 (727)
++-++-+.+.++-....+-......++.++|..|.+.++.+.+.+++.+.+......+- ..+...+-..||.+|..+.
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~--KiDv~l~kiRlg~~y~d~~ 169 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGL--KIDVFLCKIRLGLIYGDRK 169 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccc--chhhHHHHHHHHHhhccHH
Confidence 34444454444443333334556677788888888888888888877777665443321 2334445555666665544
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848 489 KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (727)
Q Consensus 489 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (727)
-.++.++.....++. |.+....-..-...|.......++.+|-.++-.++..+..
T Consensus 170 vV~e~lE~~~~~iEk------GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 170 VVEESLEVADDIIEK------GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHHHHHHHHHHh------CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 444444443333333 3333333333344455556666777777777666655443
No 323
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=94.80 E-value=3.4 Score=43.80 Aligned_cols=178 Identities=16% Similarity=0.059 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHhc
Q 004848 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRY-------DEAGFAYQKALTAFKTNK 466 (727)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~ 466 (727)
....||.+++..++|+.|...|+.+..-+.........+.++-..|.+++..+.. +....+++.|+..+....
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 4778999999999999999999988776655555555666777777777777643 467778888888777732
Q ss_pred CC---CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-hcCCCCCChHhHHHHHHHHHHHH--HhcccHHHHHHHH
Q 004848 467 GE---NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY-EKPVPGVPPEEIASGLTDVSSIY--ESMNELEQAIKLL 540 (727)
Q Consensus 467 ~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~ 540 (727)
.+ .......+....+.++...|.+.+|...+-+..... .+.. ..-..+..+-.+|.+| ....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l---~~~~~alllE~~a~~~~~~~~~--------- 357 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDL---RPFGSALLLEQAAYCYASLRSN--------- 357 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhh---hhHhhHHHHHHHHHhhcccccC---------
Confidence 11 123556677788888888999888877776665552 1100 0001233444444444 1110
Q ss_pred HHHHHHHHhCCCC--CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004848 541 QKALKIYNDAPGQ--QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590 (727)
Q Consensus 541 ~~al~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 590 (727)
...++. ....+.-+..-|.-|.+.|+...|..+|.+++.++..
T Consensus 358 -------~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 358 -------RPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred -------CCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 000000 0111222334578899999999999999999988653
No 324
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=6 Score=40.50 Aligned_cols=194 Identities=14% Similarity=0.108 Sum_probs=138.4
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (727)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (727)
-.......+..+.++....++..|...+++.+-.+.+ +........++..++.++.+-+..-.+..+.-.++.....
T Consensus 269 ~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k---~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se 345 (482)
T KOG4322|consen 269 YQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK---GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE 345 (482)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 4455677778999999999999999999998776655 4445667788888899888888777777777776666554
Q ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCch-----hHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004848 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA-----FFGVALNQMGLACVQRYSINEAVELFE 624 (727)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~ 624 (727)
. ..+...+..-..++..+...|..+.|...+..++......+.-... ..+.++...+..+ ...+.+.+.++++
T Consensus 346 y-~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~ 423 (482)
T KOG4322|consen 346 Y-SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLD 423 (482)
T ss_pred h-ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHH
Confidence 4 3333444555678888999999999999999999876544332211 0111222222222 4557788889999
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChH---HHHHHHHHHHH
Q 004848 625 EARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD---DAIEILEFVVG 670 (727)
Q Consensus 625 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~ 670 (727)
+|-.++.+..- +....++.+.+|..|-..|+.+ ++...|+++..
T Consensus 424 ~A~~~f~kL~~--he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 424 LAQSIFYKLGC--HEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred HHHHHHHHccc--hHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 99888888755 6678889999999999999865 45555666554
No 325
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=94.57 E-value=3.9 Score=43.36 Aligned_cols=180 Identities=11% Similarity=0.022 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccH-------HHHHHHHHHHHHHH
Q 004848 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL-------EQAIKLLQKALKIY 547 (727)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~ 547 (727)
.....||++++.+++|+-|...|+.+.+-+.. .......+.++-..|.++...+.. +....+++.|+..+
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~---Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y 285 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKN---DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTY 285 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhh---chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHH
Confidence 45567899999999999999999999887643 222333455555566666665533 46777888888877
Q ss_pred HhC----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH--HHhCCHHHHHH
Q 004848 548 NDA----PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC--VQRYSINEAVE 621 (727)
Q Consensus 548 ~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~ 621 (727)
... .........+....+.++...|.+.+|...+-+.....- ..+..+...+.++..+|.++ ........-..
T Consensus 286 ~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l-~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~ 364 (414)
T PF12739_consen 286 LKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL-ESDLRPFGSALLLEQAAYCYASLRSNRPSPGLT 364 (414)
T ss_pred HhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-hhhhhhHhhHHHHHHHHHhhcccccCCCCccch
Confidence 762 122223344566678888888998888777766655421 00000011344555555555 11100000000
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004848 622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (727)
Q Consensus 622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (727)
- ....+--+..-|.-|...|+...|+.+|.+++.++.
T Consensus 365 r---------------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 365 R---------------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred h---------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 0 011222233446678999999999999999998875
No 326
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=94.48 E-value=5.3 Score=39.18 Aligned_cols=219 Identities=15% Similarity=0.124 Sum_probs=117.7
Q ss_pred HcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004848 404 TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADM 483 (727)
Q Consensus 404 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 483 (727)
..++|++|++.+... +..+.+.|++.-|.++..-.++.+.+.. .+........++.+
T Consensus 2 ~~kky~eAidLL~~G--------------------a~~ll~~~Q~~sg~DL~~lliev~~~~~---~~~~~~~~~rl~~l 58 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG--------------------ALILLKHGQYGSGADLALLLIEVYEKSE---DPVDEESIARLIEL 58 (260)
T ss_dssp HTT-HHHHHHHHHHH--------------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHH--------------------HHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHH
Confidence 356777777766544 4556677777777777766677666643 22233344566666
Q ss_pred HHHcCChH-HHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHH-----------HHHHHhCC
Q 004848 484 YNRTGKLR-ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA-----------LKIYNDAP 551 (727)
Q Consensus 484 ~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~~ 551 (727)
+...+.-+ +-..+..++++..+. +.........+..+|..|.+.|++.+|..+|-.. +......
T Consensus 59 ~~~~~~~~p~r~~fi~~ai~WS~~---~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~- 134 (260)
T PF04190_consen 59 ISLFPPEEPERKKFIKAAIKWSKF---GSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK- 134 (260)
T ss_dssp HHHS-TT-TTHHHHHHHHHHHHHT---SS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH-
T ss_pred HHhCCCCcchHHHHHHHHHHHHcc---CCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh-
Confidence 66655433 455667777777622 3334455778999999999999999999887421 1111111
Q ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh----CC------CCchhHHHHHHHHHHHHHHhCCHHHHHH
Q 004848 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI----GE------RKSAFFGVALNQMGLACVQRYSINEAVE 621 (727)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~ 621 (727)
+.+.............|...++...|...+..-.+.+... .. ...+..-.++. -..-++.++ ..
T Consensus 135 ~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~l--Ll~t~e~~~----~~ 208 (260)
T PF04190_consen 135 GYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQL--LLLTCERDN----LP 208 (260)
T ss_dssp TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHH--HHHHHHHT-----HH
T ss_pred cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHH--HHHHHhcCc----HH
Confidence 3333333333444556778899999998888777653322 11 11121111221 122233333 35
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 004848 622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (727)
Q Consensus 622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 656 (727)
.|....+.++..... +|.....+..+|..|+...
T Consensus 209 ~F~~L~~~Y~~~L~r-d~~~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 209 LFKKLCEKYKPSLKR-DPSFKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHHHHHTHH---H-HHHTHHHHHHHHHHHH---
T ss_pred HHHHHHHHhCccccc-cHHHHHHHHHHHHHHCCCC
Confidence 566555554443322 4666777888888887654
No 327
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=94.37 E-value=5.2 Score=38.57 Aligned_cols=183 Identities=14% Similarity=0.109 Sum_probs=94.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhcCCCCCCh
Q 004848 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIYEKPVPGVPP 513 (727)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (727)
+..+|.+....|+|++.+.++.+++.. +......-...+..+|-. .|....+...+.......... ..
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~-------~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~----~~ 72 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEM-------NPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENK----GN 72 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHT-------SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----TT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhccc----ch
Confidence 456788888899999999998888876 122223333344444422 344444544444433332221 00
Q ss_pred HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCC----CccHHHHHHHHHHHHHHc-----C-----CHHHHHH
Q 004848 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ----QSTVAGIEAQMGVMYYML-----G-----NYSDSYD 579 (727)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~la~~~~~~-----g-----~~~~A~~ 579 (727)
+... .+..-|. ..=-++=...+..++.+.....-. .......+-..|..|.-. | -.+.|..
T Consensus 73 ~~~~----~~i~~yk-~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 147 (236)
T PF00244_consen 73 EKQV----KLIKDYK-KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALE 147 (236)
T ss_dssp HHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred hHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHH
Confidence 1111 1111111 011122234445555554432111 111222222344444321 1 2368999
Q ss_pred HHHHHHHHHHH-hCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004848 580 SFKNAISKLRA-IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633 (727)
Q Consensus 580 ~~~~al~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (727)
.|++|+.+... +.+.+|...+.+++.-...|...|+.++|+.+.++|++.+...
T Consensus 148 aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~ 202 (236)
T PF00244_consen 148 AYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE 202 (236)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred hhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 99999999998 4555544445455444444456899999999999998875543
No 328
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.33 E-value=0.79 Score=40.37 Aligned_cols=87 Identities=18% Similarity=0.078 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004848 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (727)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~ 679 (727)
...+..+..+-...++.+++..++....-+ .|.....-..-|.++...|+|.+|+.+|+.+.. .
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~--------~ 73 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE--------R 73 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc--------c
Confidence 345666677777888999999888877777 788888889999999999999999999998753 3
Q ss_pred ChhHHHHHHHHHHHHHHhCChhH
Q 004848 680 NPDVDDEKRRLAELLKEAGRVRS 702 (727)
Q Consensus 680 ~p~~~~~~~~La~~~~~~g~~~~ 702 (727)
.|..+.+.-.++.++..+|+..=
T Consensus 74 ~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 74 APGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred CCCChHHHHHHHHHHHHcCChHH
Confidence 56677777788888888887653
No 329
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.28 E-value=0.13 Score=32.94 Aligned_cols=36 Identities=31% Similarity=0.270 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004848 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (727)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~ 678 (727)
.++..||.+-...++|++|+.-|++++++.++++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 478899999999999999999999999999887653
No 330
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.28 E-value=4.3 Score=41.36 Aligned_cols=147 Identities=14% Similarity=0.063 Sum_probs=94.7
Q ss_pred ChhHHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHH
Q 004848 470 HPAVASVFVRLADMYNRTGK------------LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI 537 (727)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (727)
+|....+|..+....-..-. .+.-+.+|++|++. +|.....+..+-.+.....+.++..
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~---------np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH---------NPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 78888888888876655433 34556677777777 2222334444444555666777777
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC----------chhHHHHHHHHH
Q 004848 538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK----------SAFFGVALNQMG 607 (727)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la 607 (727)
..+++++...+.. ..+-..|...-......-.+......|.+++..+....... ......++..+.
T Consensus 86 ~~we~~l~~~~~~----~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~ 161 (321)
T PF08424_consen 86 KKWEELLFKNPGS----PELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLC 161 (321)
T ss_pred HHHHHHHHHCCCC----hHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence 7778777764433 11111122222222233468899999999998877654432 233456777788
Q ss_pred HHHHHhCCHHHHHHHHHHHHHH
Q 004848 608 LACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~ 629 (727)
....+.|-.+.|+..++-.+++
T Consensus 162 ~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 162 RFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHCCchHHHHHHHHHHHHH
Confidence 8889999999999999999987
No 331
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.07 E-value=0.42 Score=38.98 Aligned_cols=95 Identities=21% Similarity=0.267 Sum_probs=65.1
Q ss_pred HHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHHHH
Q 004848 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQ-----------LENSLMCYTTGLEVQK 339 (727)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~~ 339 (727)
+|.-++..|++-+|+++.+..+..... ..++ +..+..-|.++..+.. .-.++++|.++..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~---~~~~---~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-- 73 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE---DESS---WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-- 73 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC---CCch---HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc--
Confidence 466789999999999999999877521 1111 1235666777655432 23567777777777
Q ss_pred HHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004848 340 QVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379 (727)
Q Consensus 340 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 379 (727)
.|..+..++.+|.-+.....|+++..-.+++|.+
T Consensus 74 ------sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 74 ------SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ------ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 5777888888887766666677777777776654
No 332
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.01 E-value=0.3 Score=38.81 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCC
Q 004848 620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699 (727)
Q Consensus 620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~ 699 (727)
+..+++++.. +|+...+.+.+|..+...|++++|++.+-.++.... ......+...|-.++...|.
T Consensus 8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr------~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDR------DYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T------TCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------cccccHHHHHHHHHHHHcCC
Confidence 4456667766 899999999999999999999999999988875421 11224455566666666666
Q ss_pred hhHHH
Q 004848 700 VRSRK 704 (727)
Q Consensus 700 ~~~A~ 704 (727)
-+.-.
T Consensus 74 ~~plv 78 (90)
T PF14561_consen 74 GDPLV 78 (90)
T ss_dssp T-HHH
T ss_pred CChHH
Confidence 55444
No 333
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=6.9 Score=38.53 Aligned_cols=132 Identities=17% Similarity=0.154 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 004848 325 ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET 404 (727)
Q Consensus 325 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~ 404 (727)
++-++-+++.++-..+.+|+ ....+++...|..|.+.|+-+.|.+.+.+.....-..+.. +....+...+|..|
T Consensus 81 eeki~eld~~iedaeenlGE--~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~k--iDVvf~~iRlglfy-- 154 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGE--SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHK--IDVVFYKIRLGLFY-- 154 (393)
T ss_pred HHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc--hhhHHHHHHHHHhh--
Confidence 44555666666665554443 4677899999999999999999999999988776655533 33344455556555
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848 405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463 (727)
Q Consensus 405 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 463 (727)
++.+-..+..++|-.++..+++....-..-...|.......+|.+|..+|-.++..+.
T Consensus 155 -~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 155 -LDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred -ccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 4555555666667677777777655544555556667777888888888888776653
No 334
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.54 E-value=0.86 Score=34.45 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004848 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (727)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (727)
...-|.-++...+.++|+..++++++.... .+....++-.+..+|...|+|.+++.+...-+++.....+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-----~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled 78 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITD-----REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELED 78 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 444566667888999999999999998533 4667788888999999999999999998888888766544
No 335
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.49 E-value=1.5 Score=44.34 Aligned_cols=105 Identities=22% Similarity=0.228 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCC
Q 004848 309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS 388 (727)
Q Consensus 309 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 388 (727)
.++..+|..|...|+++.|++.|-++-..+.. .......+.++-.+-...|+|..-..+..+|............
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q 225 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQ 225 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHH
Confidence 45888999999999999999999998877654 3567788889989999999998888888777665211000000
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848 389 LEEAADRRLMGLICETKGDHEAALEHLVLA 418 (727)
Q Consensus 389 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a 418 (727)
...+.+...-|.+...+++|..|..+|-.+
T Consensus 226 ~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 226 EVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 000123444555666666888888877554
No 336
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.29 E-value=0.26 Score=31.53 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004848 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (727)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (727)
.++..||.+-+..++|++|+.-|++++++.++...
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 46788999999999999999999999999877654
No 337
>PRK10941 hypothetical protein; Provisional
Probab=93.24 E-value=1.1 Score=43.93 Aligned_cols=82 Identities=12% Similarity=0.109 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 004848 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677 (727)
Q Consensus 598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g 677 (727)
.....+.++-.+|...++++.|+.+.+..+.+ .|+...-+...|.+|.++|.+..|..-++..++.+
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~----- 245 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC----- 245 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----
Confidence 34567888889999999999999999999999 78888888999999999999999999999999875
Q ss_pred CCChhHHHHHHHHHH
Q 004848 678 TANPDVDDEKRRLAE 692 (727)
Q Consensus 678 ~~~p~~~~~~~~La~ 692 (727)
+++|........+..
T Consensus 246 P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 246 PEDPISEMIRAQIHS 260 (269)
T ss_pred CCchhHHHHHHHHHH
Confidence 555655444444433
No 338
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=93.22 E-value=9.1 Score=37.55 Aligned_cols=219 Identities=11% Similarity=0.121 Sum_probs=102.9
Q ss_pred HhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004848 320 MLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMG 399 (727)
Q Consensus 320 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~ 399 (727)
..++|++|++.+..+... +.+.|++..|.++..-.++.......+... .....+.
T Consensus 2 ~~kky~eAidLL~~Ga~~----------------------ll~~~Q~~sg~DL~~lliev~~~~~~~~~~---~~~~rl~ 56 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALI----------------------LLKHGQYGSGADLALLLIEVYEKSEDPVDE---ESIARLI 56 (260)
T ss_dssp HTT-HHHHHHHHHHHHHH----------------------HHHTT-HHHHHHHHHHHHHHHHHTT---SH---HHHHHHH
T ss_pred ccccHHHHHHHHHHHHHH----------------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCH---HHHHHHH
Confidence 356677777666655444 334444444444444444444443322221 1123444
Q ss_pred HHHHHcCCHH-HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHHhcC
Q 004848 400 LICETKGDHE-AALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA-----------LTAFKTNKG 467 (727)
Q Consensus 400 ~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~~~ 467 (727)
.+....+.-+ +-..+..+++......+........+..+|..|...|++.+|..+|-.. +..+....
T Consensus 57 ~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~- 135 (260)
T PF04190_consen 57 ELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKG- 135 (260)
T ss_dssp HHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHT-
T ss_pred HHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhc-
Confidence 4444443222 3445556666666444555667788889999999999999998887321 11122222
Q ss_pred CCChhHHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHHhcCCC---------CCChHhHHHHHHHHHHHHHhcccHHHHH
Q 004848 468 ENHPAVASVFVRLA-DMYNRTGKLRESKSYCENALRIYEKPVP---------GVPPEEIASGLTDVSSIYESMNELEQAI 537 (727)
Q Consensus 468 ~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (727)
.+.....+...| ..|...++...|...+..-.+.+....+ ....|.. .....|-.+ +..+ +.
T Consensus 136 --~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~Pll-nF~~lLl~t-~e~~----~~ 207 (260)
T PF04190_consen 136 --YPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLL-NFLQLLLLT-CERD----NL 207 (260)
T ss_dssp --SS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHH-HHHHHHHHH-HHHT-----H
T ss_pred --CCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchH-HHHHHHHHH-HhcC----cH
Confidence 233333333333 3466679999999888777765221100 1112221 111111111 2222 23
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC
Q 004848 538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG 572 (727)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 572 (727)
..|....+.+......++.....+..+|..|+...
T Consensus 208 ~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 208 PLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHHHHHHTHH---HHHHTHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhCccccccHHHHHHHHHHHHHHCCCC
Confidence 55665555555443333344556677777777643
No 339
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.20 E-value=0.098 Score=48.16 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=56.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh-cCCCCc
Q 004848 650 GTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR-VNNDGI 723 (727)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~-~~~~~i 723 (727)
......++.+.|.+.|.+++++ -|+....|+++|....+.|+++.|. +.|++.++++|. .....+
T Consensus 3 ~~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa-~a~~~~L~ldp~D~~gaa~ 68 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAA-AAYEEVLELDPEDHGGAAL 68 (287)
T ss_pred chhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHH-HHHHHHHcCCcccccchhh
Confidence 3456778999999999999987 5999999999999999999999999 999999999998 544433
No 340
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.08 E-value=3.3 Score=38.07 Aligned_cols=84 Identities=12% Similarity=0.154 Sum_probs=60.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004848 401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL 480 (727)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 480 (727)
.++..-.-+.|+..|.++. .......+...+.+|..|. .-+.++|+.++.+++++... ++...+.++..|
T Consensus 115 y~Wsr~~d~~A~~~fL~~E-----~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sL 184 (203)
T PF11207_consen 115 YHWSRFGDQEALRRFLQLE-----GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSL 184 (203)
T ss_pred HHhhccCcHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHH
Confidence 3444445567777765542 1223345677788887776 67899999999999998533 234567889999
Q ss_pred HHHHHHcCChHHHH
Q 004848 481 ADMYNRTGKLRESK 494 (727)
Q Consensus 481 a~~~~~~g~~~~A~ 494 (727)
+.+|..+|+++.|-
T Consensus 185 as~~~~~~~~e~AY 198 (203)
T PF11207_consen 185 ASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHhcchhhhh
Confidence 99999999999874
No 341
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.06 E-value=0.12 Score=31.20 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 685 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 685 ~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.++..+|.++...|++++|. ..++.+++++|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~-~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEAL-EYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHH-HHHHHHHccCCC
Confidence 46789999999999999999 999999988774
No 342
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.90 E-value=1.3 Score=36.10 Aligned_cols=94 Identities=17% Similarity=0.160 Sum_probs=57.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC----CH-------HHHHHHHHHHHHHHHH
Q 004848 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY----SI-------NEAVELFEEARSILEQ 632 (727)
Q Consensus 564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~-------~~A~~~~~~al~~~~~ 632 (727)
++.-++..|++-+|+++.+..+..-.. ..+ ....+..-|.++..+. +. -.++++|.++..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~---~~~--~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L--- 73 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE---DES--SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL--- 73 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC---CCc--hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc---
Confidence 366788999999999999998775322 111 1245555566665443 33 3456666666666
Q ss_pred hcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848 633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (727)
Q Consensus 633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (727)
.|..+..++.||.-+....-|+++..-.++++.
T Consensus 74 -----sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 74 -----SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred -----ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 777777777777665544445555544444443
No 343
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.58 E-value=0.86 Score=31.83 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004848 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRR 689 (727)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~ 689 (727)
+.++.+|..+.++|+|++|..+.+.++++ .|++..+...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHHH
Confidence 36789999999999999999999999998 5666655543
No 344
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.57 E-value=21 Score=40.08 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=20.5
Q ss_pred hHhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 004848 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKA 543 (727)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (727)
....-.+....|.-....|++++|+.+|.-|
T Consensus 410 ~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La 440 (613)
T PF04097_consen 410 EDFLREIIEQAAREAEERGRFEDAILLYHLA 440 (613)
T ss_dssp SHHHHHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445556666777777788888887777654
No 345
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.54 E-value=7.3 Score=34.68 Aligned_cols=134 Identities=13% Similarity=0.111 Sum_probs=91.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccch
Q 004848 225 LKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA 304 (727)
Q Consensus 225 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 304 (727)
+..+..+.+.++ .++|+..|...-+. + .. ..-..+....|.+....|+...|+..|..+-..... |..
T Consensus 62 flaAL~lA~~~k-~d~Alaaf~~lekt----g--~g-~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~---P~~- 129 (221)
T COG4649 62 FLAALKLAQENK-TDDALAAFTDLEKT----G--YG-SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI---PQI- 129 (221)
T ss_pred HHHHHHHHHcCC-chHHHHHHHHHHhc----C--CC-cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC---cch-
Confidence 344555666666 77777766654432 1 11 122456778899999999999999999987665311 111
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004848 305 LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD 378 (727)
Q Consensus 305 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 378 (727)
..-.+...-+.++...|-|++-.... ..+.++.+|....+.-.||..-++.|++..|..+|.+...
T Consensus 130 -~rd~ARlraa~lLvD~gsy~dV~srv-------epLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 130 -GRDLARLRAAYLLVDNGSYDDVSSRV-------EPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred -hhHHHHHHHHHHHhccccHHHHHHHh-------hhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 11123556677778888877654433 3334566788888899999999999999999999988765
No 346
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=92.38 E-value=7.9 Score=38.16 Aligned_cols=114 Identities=16% Similarity=0.099 Sum_probs=75.5
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004848 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (727)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (727)
......++.+.|..|++.|+-+.|++.+.+..+..-..+ ..-+.......+|.+|... +--.+..++|-.++++
T Consensus 100 E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D~---~lV~~~iekak~liE~- 173 (393)
T KOG0687|consen 100 ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLDH---DLVTESIEKAKSLIEE- 173 (393)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhccH---HHHHHHHHHHHHHHHh-
Confidence 456678899999999999999999999988776544433 1344555666677776554 3344445555555555
Q ss_pred CCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (727)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (727)
|.+....-..-..-|.......++.+|-.+|-.++..+..
T Consensus 174 --GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 174 --GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred --CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 4444443344444566666778888888888877766543
No 347
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.32 E-value=3.6 Score=37.81 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004848 615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694 (727)
Q Consensus 615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~ 694 (727)
.-++|...|.++-. ...-+.+...+.||..|. ..+.++|+.+|.+++++.. +++.-+++++..|+.++
T Consensus 121 ~d~~A~~~fL~~E~-------~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 121 GDQEALRRFLQLEG-------TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLASIY 188 (203)
T ss_pred CcHHHHHHHHHHcC-------CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHH
Confidence 34566666655432 223456778888888777 6689999999999998753 33345688999999999
Q ss_pred HHhCChhHHH
Q 004848 695 KEAGRVRSRK 704 (727)
Q Consensus 695 ~~~g~~~~A~ 704 (727)
..+|+++.|.
T Consensus 189 ~~~~~~e~AY 198 (203)
T PF11207_consen 189 QKLKNYEQAY 198 (203)
T ss_pred HHhcchhhhh
Confidence 9999999986
No 348
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.06 E-value=2.1 Score=37.72 Aligned_cols=88 Identities=8% Similarity=-0.035 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC
Q 004848 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (727)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (727)
......+..+..+-...++.+++...+.-..-+ .|.....-..-|.++...|+|.+|+.+|+....-
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~----- 73 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER----- 73 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-----
Confidence 344455666666777777888887777655444 6777888888888888888888888888875443
Q ss_pred CCCChHhHHHHHHHHHHHHHhcccH
Q 004848 509 PGVPPEEIASGLTDVSSIYESMNEL 533 (727)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~ 533 (727)
.+....+--.++.|+..+|+.
T Consensus 74 ----~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 74 ----APGFPYAKALLALCLYALGDP 94 (160)
T ss_pred ----CCCChHHHHHHHHHHHHcCCh
Confidence 233344445567777777664
No 349
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.96 E-value=1.2 Score=31.15 Aligned_cols=40 Identities=15% Similarity=0.074 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 004848 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648 (727)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 648 (727)
.+++.+|..+.+.|+|++|..+.+.++++ .|+...+....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHHHH
Confidence 36788999999999999999999999999 78776654433
No 350
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.89 E-value=3.9 Score=40.02 Aligned_cols=76 Identities=22% Similarity=0.234 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004848 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (727)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~ 678 (727)
...++..++..+...|+++.++..+++.+.. +|..-.+|..+-..|...|+...|+..|++.-....+-+|.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi 223 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI 223 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence 4578889999999999999999999999998 99999999999999999999999999999999877666665
Q ss_pred CChh
Q 004848 679 ANPD 682 (727)
Q Consensus 679 ~~p~ 682 (727)
....
T Consensus 224 ~P~~ 227 (280)
T COG3629 224 DPAP 227 (280)
T ss_pred CccH
Confidence 4433
No 351
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=91.61 E-value=13 Score=35.72 Aligned_cols=183 Identities=15% Similarity=0.127 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCCCChh
Q 004848 353 CRYLAEAHVQALQFSEAQKFCQMALDI-HKDNGSPASLEEAADRRLMGLICE-TKGDHEAALEHLVLASMTMIANDQDAE 430 (727)
Q Consensus 353 ~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~a~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (727)
+..+|.+..+.++|++.+.+..++... .+.... ..-.+.+..+|- ..|....+...+......-...+....
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt------~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~ 77 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELT------VEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDH 77 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCC------HHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHH
Confidence 456778888899999999999998775 221111 122455555553 346666666665432111011111111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHHHHc-----CC-----hHHHHHHH
Q 004848 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH---PAVASVFVRLADMYNRT-----GK-----LRESKSYC 497 (727)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~-----g~-----~~~A~~~~ 497 (727)
. .+..-|. ..=-++-...+...+.+.....-+.. ......+-..|..|... |+ .+.|...|
T Consensus 78 ~-----~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY 151 (244)
T smart00101 78 V-----ASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAY 151 (244)
T ss_pred H-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 1 1111111 11123445567777777766543321 22233333445555432 22 45889999
Q ss_pred HHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q 004848 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (727)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (727)
+.|+++....++..++-....+++.-...|.-+++.++|..+.++|+.-.
T Consensus 152 ~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 152 KSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999987755444444444444444455556799999998887777654
No 352
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.51 E-value=9.8 Score=33.93 Aligned_cols=148 Identities=14% Similarity=0.085 Sum_probs=98.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHH
Q 004848 482 DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIE 561 (727)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 561 (727)
.-|+..+.-..+-..|..++++. ..+..++|+..|...-+ ...+..+ ..+.
T Consensus 47 y~yw~~s~as~sgd~flaAL~lA------------------------~~~k~d~Alaaf~~lek---tg~g~Yp--vLA~ 97 (221)
T COG4649 47 YTYWQTSRASKSGDAFLAALKLA------------------------QENKTDDALAAFTDLEK---TGYGSYP--VLAR 97 (221)
T ss_pred eehhcccccccchHHHHHHHHHH------------------------HcCCchHHHHHHHHHHh---cCCCcch--HHHH
Confidence 34556666666666666666663 33555677666654332 2233333 3456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 004848 562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA-FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD 640 (727)
Q Consensus 562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 640 (727)
...+.+....|+...|+..|.++-.-.. .|. ....+...-+.++...|-|++-... .+.+.++.+|-
T Consensus 98 mr~at~~a~kgdta~AV~aFdeia~dt~-----~P~~~rd~ARlraa~lLvD~gsy~dV~sr-------vepLa~d~n~m 165 (221)
T COG4649 98 MRAATLLAQKGDTAAAVAAFDEIAADTS-----IPQIGRDLARLRAAYLLVDNGSYDDVSSR-------VEPLAGDGNPM 165 (221)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHhccCC-----CcchhhHHHHHHHHHHHhccccHHHHHHH-------hhhccCCCChh
Confidence 6789999999999999999998754211 111 1123444556677778877665443 33444566788
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848 641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (727)
Q Consensus 641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (727)
...+...||..-++.|++.+|..+|.+...
T Consensus 166 R~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 166 RHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888899999999999999999999998875
No 353
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.48 E-value=1.9 Score=44.62 Aligned_cols=73 Identities=19% Similarity=0.278 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848 267 CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340 (727)
Q Consensus 267 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 340 (727)
++..|..+++-+|+|..|++.++.. ++.....-...+...+.+++.+|.+|..+++|.+|+..|...+-...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678889999999999998753 333222222334456677999999999999999999999998876544
No 354
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.19 E-value=21 Score=37.05 Aligned_cols=172 Identities=16% Similarity=0.163 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--
Q 004848 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG-- 592 (727)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-- 592 (727)
....+|+.....+...++-+.|+...++++...+. ....++.+|....+-+....+|+++.+.+....
T Consensus 300 ~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps----------L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~ 369 (660)
T COG5107 300 YAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS----------LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSM 369 (660)
T ss_pred hhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc----------hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhh
Confidence 34566777777777788888888887777665443 234567777777777777777777765433210
Q ss_pred ---------CCCchh-----------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH-H
Q 004848 593 ---------ERKSAF-----------FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG-T 651 (727)
Q Consensus 593 ---------~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~ 651 (727)
+.++.. ...++..+-..-.+..-.+.|..+|-++.+.- . ....+|..-|. -
T Consensus 370 ~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~--~------~~h~vyi~~A~~E 441 (660)
T COG5107 370 GESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEG--I------VGHHVYIYCAFIE 441 (660)
T ss_pred hhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccC--C------CCcceeeeHHHHH
Confidence 001100 01112212222223334566777777665541 1 11112222222 2
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 004848 652 YDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (727)
Q Consensus 652 ~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (727)
|...|++.-|...|+-.+.. +|+........-..+...++-+.|. ..|++++.
T Consensus 442 ~~~~~d~~ta~~ifelGl~~--------f~d~~~y~~kyl~fLi~inde~nar-aLFetsv~ 494 (660)
T COG5107 442 YYATGDRATAYNIFELGLLK--------FPDSTLYKEKYLLFLIRINDEENAR-ALFETSVE 494 (660)
T ss_pred HHhcCCcchHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHH-HHHHHhHH
Confidence 56789999999999988765 4555555555556677888888888 88886654
No 355
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.16 E-value=3 Score=36.12 Aligned_cols=84 Identities=18% Similarity=0.129 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 004848 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP 681 (727)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p 681 (727)
.+..+..+-...++++++..++....-+ .|....+-..-|.++...|+|.+|+..|+...+- .+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~--------~~ 75 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS--------AG 75 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc--------CC
Confidence 3444444555588899998888877666 7888888888999999999999999999987742 33
Q ss_pred hHHHHHHHHHHHHHHhCChh
Q 004848 682 DVDDEKRRLAELLKEAGRVR 701 (727)
Q Consensus 682 ~~~~~~~~La~~~~~~g~~~ 701 (727)
..+.+.-.++.++..+|+..
T Consensus 76 ~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 76 APPYGKALLALCLNAKGDAE 95 (153)
T ss_pred CchHHHHHHHHHHHhcCChH
Confidence 44556666778888777755
No 356
>PRK10941 hypothetical protein; Provisional
Probab=91.14 E-value=0.56 Score=45.91 Aligned_cols=72 Identities=11% Similarity=0.101 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh-cCCC
Q 004848 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR-VNND 721 (727)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~-~~~~ 721 (727)
..+.+|-.+|...++++.|+.+.+..+.+ .|+.+.-+...|.+|.++|.+..|. ..|+..++..|+ ...+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~-~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVAL-SDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHhCCCchhHH
Confidence 46678888999999999999999999987 5777778888999999999999999 999999999998 5444
Q ss_pred Cc
Q 004848 722 GI 723 (727)
Q Consensus 722 ~i 723 (727)
.|
T Consensus 253 ~i 254 (269)
T PRK10941 253 MI 254 (269)
T ss_pred HH
Confidence 33
No 357
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=91.05 E-value=15 Score=35.34 Aligned_cols=182 Identities=13% Similarity=0.121 Sum_probs=101.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHh-cCCCCCChHhHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHhCCCCC
Q 004848 477 FVRLADMYNRTGKLRESKSYCENALRIYE-KPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQQ 554 (727)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 554 (727)
+..+|.+..+.++|++.+.+..++++... ..+ ...-.+.|..+|-. .|....+...+.. ++......+..
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eL-------t~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~~ 75 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEEL-------TVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGNE 75 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccC-------CHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCch
Confidence 45678888899999999999999887632 111 11223334444432 3555555555544 22211111111
Q ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHHHHH-----hC-----CHHHHHH
Q 004848 555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK---SAFFGVALNQMGLACVQ-----RY-----SINEAVE 621 (727)
Q Consensus 555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~-----~g-----~~~~A~~ 621 (727)
... .+..-|. ..=-++-..+....+.++....-+. +......+-..|..|.- .| -.+.|..
T Consensus 76 ~~~-----~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~ 149 (244)
T smart00101 76 DHV-----ASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV 149 (244)
T ss_pred HHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 110 1111111 1112233445556666654432211 11122222233443332 12 2568999
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 004848 622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-IGRLDDAIEILEFVVGIR 672 (727)
Q Consensus 622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 672 (727)
.|+.|+++......|.||-......+.+.+|.. +++.++|..+.++++.-.
T Consensus 150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999998887888899888877887777654 699999998888877654
No 358
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.97 E-value=0.23 Score=29.78 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004848 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381 (727)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (727)
.++..+|.++...++++.|..++++++.+.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4678899999999999999999999987654
No 359
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=90.95 E-value=3.7 Score=32.60 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004848 328 LMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (727)
Q Consensus 328 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (727)
+..+++.++. +|....+.+.+|..+...|++++|++.+-.++...+...+
T Consensus 8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~ 57 (90)
T PF14561_consen 8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYED 57 (90)
T ss_dssp HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc
Confidence 4456666666 7999999999999999999999999999999888766643
No 360
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.76 E-value=7.6 Score=37.68 Aligned_cols=79 Identities=23% Similarity=0.221 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 004848 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN 680 (727)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~ 680 (727)
..+...+..|...|.+.+|+.+.++++.+ +|-.-..+..|-.++..+|+--.|...|++.-+..+.-+|-+-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 45556678899999999999999999999 8988889999999999999999999999999988888777655
Q ss_pred hhHHHHH
Q 004848 681 PDVDDEK 687 (727)
Q Consensus 681 p~~~~~~ 687 (727)
.+...-|
T Consensus 352 ddsieew 358 (361)
T COG3947 352 DDSIEEW 358 (361)
T ss_pred chhHHHH
Confidence 5444433
No 361
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.59 E-value=19 Score=35.53 Aligned_cols=111 Identities=10% Similarity=-0.002 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 004848 348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ 427 (727)
Q Consensus 348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 427 (727)
..+.+...||.+|.+.++|..|...+.- +.........+.-.....+..+|.+|...++..+|..+..++.-+.....+
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence 4567788999999999999998877642 222211111122234566888999999999999999999988655554444
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004848 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459 (727)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 459 (727)
.......-...|+++-..++|-+|...|-+..
T Consensus 180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455677777777777766665543
No 362
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=90.45 E-value=0.68 Score=44.71 Aligned_cols=69 Identities=13% Similarity=0.138 Sum_probs=57.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004848 606 MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDD 685 (727)
Q Consensus 606 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~ 685 (727)
.|.-....|+.++|..+|+.|+.+ .|....++..+|.+....++.-+|-.+|-+|+.+ .|.+.+
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti--------sP~nse 185 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI--------SPGNSE 185 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee--------CCCchH
Confidence 344456789999999999999999 8888999999999999999999999999999976 455555
Q ss_pred HHHHH
Q 004848 686 EKRRL 690 (727)
Q Consensus 686 ~~~~L 690 (727)
++.+.
T Consensus 186 ALvnR 190 (472)
T KOG3824|consen 186 ALVNR 190 (472)
T ss_pred HHhhh
Confidence 55443
No 363
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.45 E-value=5.9 Score=40.38 Aligned_cols=107 Identities=7% Similarity=-0.020 Sum_probs=78.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCC---ch-------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004848 312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD---PR-------VGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381 (727)
Q Consensus 312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (727)
+.-|..++++++|..|..-|..+|+++.+...-.. +. ...+...|..||...++.+-|+....+.+.+.|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 33456677888888888889998888766432221 11 123456788999999999999999999999887
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 004848 382 DNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (727)
Q Consensus 382 ~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (727)
.... -+...+.++..+.+|.+|...+.-+.-++-..+
T Consensus 260 ~~fr--------nHLrqAavfR~LeRy~eAarSamia~ymywl~g 296 (569)
T PF15015_consen 260 SYFR--------NHLRQAAVFRRLERYSEAARSAMIADYMYWLSG 296 (569)
T ss_pred chhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7653 366778888889999999887766654444333
No 364
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.41 E-value=10 Score=40.33 Aligned_cols=158 Identities=19% Similarity=0.155 Sum_probs=83.4
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004848 317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV-GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADR 395 (727)
Q Consensus 317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~ 395 (727)
.....++++++....... ++. |.. ..-...++..+.++|..+.|+.+...--. .
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll--------~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~----------------r 324 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLL--------PNIPKDQGQSIARFLEKKGYPELALQFVTDPDH----------------R 324 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTG--------GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH----------------H
T ss_pred HHHHcCChhhhhhhhhhh-hhc--------ccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH----------------H
Confidence 345578888876666311 111 111 22356677778888888888776543211 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004848 396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS 475 (727)
Q Consensus 396 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 475 (727)
+ .+....|+++.|.+...+ ......|..||.....+|+++-|..+|+++-..
T Consensus 325 F---eLAl~lg~L~~A~~~a~~-----------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~-------------- 376 (443)
T PF04053_consen 325 F---ELALQLGNLDIALEIAKE-----------LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF-------------- 376 (443)
T ss_dssp H---HHHHHCT-HHHHHHHCCC-----------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H--------------
T ss_pred h---HHHHhcCCHHHHHHHHHh-----------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc--------------
Confidence 2 234567888888776531 223457888999999999999999988876443
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 004848 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA 543 (727)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (727)
..|..+|...|+.+.=.++.+.+... + -++..-.+++..|+.++.++.+.++
T Consensus 377 --~~L~lLy~~~g~~~~L~kl~~~a~~~------~--------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 377 --SGLLLLYSSTGDREKLSKLAKIAEER------G--------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp --HHHHHHHHHCT-HHHHHHHHHHHHHT------T---------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred --cccHHHHHHhCCHHHHHHHHHHHHHc------c--------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34556677777765443333333222 0 0122223445556666666555543
No 365
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.40 E-value=17 Score=38.81 Aligned_cols=152 Identities=11% Similarity=0.109 Sum_probs=89.8
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCC---------------CChHhHHHHHHHHHHHHHhcccHH
Q 004848 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG---------------VPPEEIASGLTDVSSIYESMNELE 534 (727)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------~~~~~~~~~~~~la~~~~~~g~~~ 534 (727)
+|.....+..++.+...+|+.+-|..+.++++=.+...... ........+++..-..+...|-+.
T Consensus 280 sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~r 359 (665)
T KOG2422|consen 280 SPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWR 359 (665)
T ss_pred CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChH
Confidence 68888999999999999999999999999988766553210 111122333444445566789999
Q ss_pred HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC
Q 004848 535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY 614 (727)
Q Consensus 535 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 614 (727)
.|.++++-.+.+.+.. ++ ..+.+.+-...++..+|.=-+.+++..-.. ..+..- +.++ .-..+|..|....
T Consensus 360 TA~E~cKlllsLdp~e--DP---l~~l~~ID~~ALrareYqwiI~~~~~~e~~-n~l~~~--PN~~-yS~AlA~f~l~~~ 430 (665)
T KOG2422|consen 360 TALEWCKLLLSLDPSE--DP---LGILYLIDIYALRAREYQWIIELSNEPENM-NKLSQL--PNFG-YSLALARFFLRKN 430 (665)
T ss_pred HHHHHHHHHhhcCCcC--Cc---hhHHHHHHHHHHHHHhHHHHHHHHHHHHhh-ccHhhc--CCch-HHHHHHHHHHhcC
Confidence 9999999988886642 11 112222333333444555444444433211 111111 1111 1123555666555
Q ss_pred C---HHHHHHHHHHHHHHH
Q 004848 615 S---INEAVELFEEARSIL 630 (727)
Q Consensus 615 ~---~~~A~~~~~~al~~~ 630 (727)
. -..|...+.+|+.+.
T Consensus 431 ~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 431 EEDDRQSALNALLQALKHH 449 (665)
T ss_pred ChhhHHHHHHHHHHHHHhC
Confidence 4 567888888888773
No 366
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=90.16 E-value=37 Score=38.21 Aligned_cols=152 Identities=11% Similarity=0.004 Sum_probs=85.0
Q ss_pred CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 004848 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN 425 (727)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 425 (727)
++.....+..|..++...|++++-...-.++-++.|-.. .. ..-|..--......++-..+...|++++.-....
T Consensus 109 ~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~---~l--Wl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v 183 (881)
T KOG0128|consen 109 NSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPP---HL--WLEWLKDELSMTQSEERKEVEELFEKALGDYNSV 183 (881)
T ss_pred cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCh---HH--HHHHHHHHHhhccCcchhHHHHHHHHHhcccccc
Confidence 345556677777888889998877776666666665432 11 1111111111222367778888888887422222
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (727)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (727)
......+......+..+...++++.-...|.+++...-..... .......+..+-..|...-..++-+.++...+..
T Consensus 184 ~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~-G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~ 260 (881)
T KOG0128|consen 184 PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITE-GAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ 260 (881)
T ss_pred hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcc-cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 2222233333333444556678888889999988764433221 2234455555555555555556666666666554
No 367
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.12 E-value=8.1 Score=39.43 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004848 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380 (727)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 380 (727)
.-.|..||..+++.+-|+....+.+.+ +|....-+...|.++..+.+|.+|.+-+--+.-++
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~l--------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINL--------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhc--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557889999999999999999999988 78888889999999999999999887765554433
No 368
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=90.09 E-value=21 Score=35.30 Aligned_cols=55 Identities=20% Similarity=0.129 Sum_probs=29.4
Q ss_pred HHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 004848 483 MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (727)
Q Consensus 483 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (727)
...+..+..+-++....|+++ .+.-+.+|..|+.- ..--..+|..++++|++...
T Consensus 193 ~AWRERnp~~RI~~A~~ALeI---------N~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e 247 (556)
T KOG3807|consen 193 KAWRERNPPARIKAAYQALEI---------NNECATAYVLLAEE--EATTIVDAERLFKQALKAGE 247 (556)
T ss_pred HHHHhcCcHHHHHHHHHHHhc---------CchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHH
Confidence 334444555555666666666 34445555555432 22234566777777776543
No 369
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.05 E-value=13 Score=38.09 Aligned_cols=118 Identities=15% Similarity=0.017 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHcCC---hhHHHHHHHHhcccch
Q 004848 222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGK--PSLELVMCLHVIAAIYCSLGQ---YNEAIPVLEQSIEIPV 296 (727)
Q Consensus 222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~ 296 (727)
..+...|+.++.... |.+|+.++..|-+.|-.+...- .-...+..-..+-|||+.+.+ .+.|..-+..+-+-+.
T Consensus 164 lg~hekaRa~m~re~-y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 164 LGLHEKARAAMEREM-YSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HhHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 345678888888875 9999999999888776552110 001233344556788887766 4556665555544433
Q ss_pred hccCccc-----------hH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848 297 IEEGQEH-----------AL--AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340 (727)
Q Consensus 297 ~~~~~~~-----------~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 340 (727)
...|.++ |. .....+..-|.+.+.+|+-++|.++++.+.....+
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~e 299 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLE 299 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 3333222 21 12334455577777777777777777777665444
No 370
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=89.81 E-value=58 Score=40.02 Aligned_cols=154 Identities=18% Similarity=0.144 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC------------------------
Q 004848 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR------------------------ 447 (727)
Q Consensus 392 a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------------ 447 (727)
+.....+|.+|...|.+.+|+.+|..|+..++..++....+.++-.++.+....+.
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~ 321 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSS 321 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCcc
Confidence 45677899999999999999999999999999999988888887766654432110
Q ss_pred --------------------------------HHHHHHHHHHHHHHHHHhc---CCCCh--hHHHHHHHHHHHHHHcC--
Q 004848 448 --------------------------------YDEAGFAYQKALTAFKTNK---GENHP--AVASVFVRLADMYNRTG-- 488 (727)
Q Consensus 448 --------------------------------~~~A~~~~~~al~~~~~~~---~~~~~--~~~~~~~~la~~~~~~g-- 488 (727)
...-...+++++.++.+.. .+..| -...+...++.++....
T Consensus 322 s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~ 401 (1185)
T PF08626_consen 322 SPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLS 401 (1185)
T ss_pred CcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcc
Confidence 1112234455555555443 11122 23456667777777776
Q ss_pred ------------------ChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 004848 489 ------------------KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (727)
Q Consensus 489 ------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (727)
.-.++..++.+++.+.-. .-+..+...++..+|.+|...|-..++.-+++.++...-
T Consensus 402 ~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~---~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~ 476 (1185)
T PF08626_consen 402 DNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLK---DLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLV 476 (1185)
T ss_pred cchhhhhccccccccCCCCHHHHHHHHHHhhhhhhh---hCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 677777888888776433 223556788899999999999988888777777776654
No 371
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.64 E-value=6.7 Score=41.75 Aligned_cols=158 Identities=18% Similarity=0.164 Sum_probs=88.6
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004848 360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG 439 (727)
Q Consensus 360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 439 (727)
....++++++.++... -.+.|... ......++..+...|-.+.|+.+.. ++ .. .-
T Consensus 271 av~~~d~~~v~~~i~~-~~ll~~i~-------~~~~~~i~~fL~~~G~~e~AL~~~~-----------D~---~~---rF 325 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAA-SNLLPNIP-------KDQGQSIARFLEKKGYPELALQFVT-----------DP---DH---RF 325 (443)
T ss_dssp HHHTT-HHH-----HH-HHTGGG---------HHHHHHHHHHHHHTT-HHHHHHHSS------------H---HH---HH
T ss_pred HHHcCChhhhhhhhhh-hhhcccCC-------hhHHHHHHHHHHHCCCHHHHHhhcC-----------Ch---HH---Hh
Confidence 3456788887666631 11222221 1226677888889999999987653 22 12 22
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHH
Q 004848 440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG 519 (727)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 519 (727)
.+....|+++.|.+..++ ......|..||......|+++-|..+|+++-..
T Consensus 326 eLAl~lg~L~~A~~~a~~-------------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~---------------- 376 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKE-------------LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF---------------- 376 (443)
T ss_dssp HHHHHCT-HHHHHHHCCC-------------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H----------------
T ss_pred HHHHhcCCHHHHHHHHHh-------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc----------------
Confidence 345678998888765432 224468999999999999999999999886433
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA 584 (727)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 584 (727)
..|..+|...|+.+.=.++... .... +. ++..-.+++..|+.++.++.+.++
T Consensus 377 -~~L~lLy~~~g~~~~L~kl~~~----a~~~-~~-------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 377 -SGLLLLYSSTGDREKLSKLAKI----AEER-GD-------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -HHHHHHHHHCT-HHHHHHHHHH----HHHT-T--------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -cccHHHHHHhCCHHHHHHHHHH----HHHc-cC-------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3466677888886543333333 3222 11 122234556667777776666554
No 372
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.33 E-value=43 Score=37.79 Aligned_cols=49 Identities=12% Similarity=-0.018 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccc
Q 004848 245 ALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP 295 (727)
Q Consensus 245 ~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 295 (727)
|.-|+.+.+.. ..+......++...|..++..|++++|..+|-+.+...
T Consensus 350 y~~Ai~LAk~~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 350 YKVAINLAKSQ--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 44455555443 23335567788889999999999999999999998763
No 373
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=89.24 E-value=3.1 Score=31.45 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004848 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV 270 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~ 270 (727)
.+..+...|..+-..|+ +++|+.+|++|++.+.++....|+......+..
T Consensus 5 ~A~~~a~~AVe~D~~gr-~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ 54 (75)
T cd02682 5 MARKYAINAVKAEKEGN-AEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQ 54 (75)
T ss_pred HHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 45677888999999998 999999999999999988777666444433333
No 374
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=89.18 E-value=52 Score=38.62 Aligned_cols=108 Identities=14% Similarity=0.077 Sum_probs=74.6
Q ss_pred HHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHH
Q 004848 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG 350 (727)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 350 (727)
...++.....|+.|+..|++...-.+ |... -..+.+++|.+...+-.-..--..|.+|+..+..+.+ .+..+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 552 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFP---GRKE---GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAP 552 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCC---Cccc---chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCc
Confidence 45667778889999999999876652 1111 2335777777776543322222566666666555432 35555
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004848 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (727)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (727)
.-|...|.+|...|+|++-+++|.-|++..+.....
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 553 LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 667788889999999999999999999998876543
No 375
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.70 E-value=0.6 Score=26.98 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHH
Q 004848 267 CLHVIAAIYCSLGQYNEAIPVLEQ 290 (727)
Q Consensus 267 ~~~~la~~~~~~g~~~~A~~~~~~ 290 (727)
++..+|.++...|++++|...+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 567899999999999999998863
No 376
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.68 E-value=25 Score=34.21 Aligned_cols=136 Identities=15% Similarity=0.144 Sum_probs=88.3
Q ss_pred hCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004848 321 LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL 400 (727)
Q Consensus 321 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~ 400 (727)
...-++-++-+.+.++-.+...| .....+++.++|..|.+.++.+.+.+++.+.+...-..+-. +....+...||.
T Consensus 88 ~kkneeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~K--iDv~l~kiRlg~ 163 (412)
T COG5187 88 LKKNEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLK--IDVFLCKIRLGL 163 (412)
T ss_pred HHhhHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccc--hhhHHHHHHHHH
Confidence 33445666667666665544222 24577899999999999999999999999998877665533 333344555666
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848 401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463 (727)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 463 (727)
+|..+ .-..+.++.+-.++..+++....-..-...|.......+|.+|..++-..+..+.
T Consensus 164 ~y~d~---~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 164 IYGDR---KVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred hhccH---HHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 66444 3344444444455666666544444444456666677788888888877776543
No 377
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=88.56 E-value=28 Score=34.73 Aligned_cols=95 Identities=9% Similarity=0.131 Sum_probs=68.8
Q ss_pred HHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 004848 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQ 605 (727)
Q Consensus 526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 605 (727)
+....++.++|++++++..+..... ..+..+..+...+|.++...|+..++.+.+...-..+.......+.. ...++.
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~-~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V-h~~fY~ 161 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEY-KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV-HSSFYS 161 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh-hhhHHH
Confidence 3445668999999999999887665 44456667788899999999999999999999888777766654433 334555
Q ss_pred HH-HHHHHhCCHHHHHHH
Q 004848 606 MG-LACVQRYSINEAVEL 622 (727)
Q Consensus 606 la-~~~~~~g~~~~A~~~ 622 (727)
++ ..|...|++..+...
T Consensus 162 lssqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 162 LSSQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 55 555566776654433
No 378
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=88.53 E-value=17 Score=32.68 Aligned_cols=164 Identities=17% Similarity=0.195 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHH
Q 004848 349 VGETCRYLAEAHVQ-ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET-----KGDHEAALEHLVLASMTM 422 (727)
Q Consensus 349 ~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~ 422 (727)
.++.+..|+..+.- +.+|++|...|.. +-+.... +...+.+|..+.. .++...|++.+..+..
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~-------nCden~y--~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~-- 101 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKK-------NCDENSY--PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD-- 101 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHh-------cccccCC--cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--
Confidence 44556666665432 3355555555543 3222111 2445666655542 3578899999987753
Q ss_pred HhCCCChhHHHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-----------
Q 004848 423 IANDQDAEVASVDCSIGDTYLSL-----S--RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY----------- 484 (727)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~~-----g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~----------- 484 (727)
.....+..++|.++..- + +..+|++++.++.++ ....+.+.|...|
T Consensus 102 ------~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~a 165 (248)
T KOG4014|consen 102 ------ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTNA 165 (248)
T ss_pred ------cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcccC
Confidence 23344555666666532 2 367888888887764 1223333333333
Q ss_pred -------------HHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHH
Q 004848 485 -------------NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES----MNELEQAIKLLQKALKIY 547 (727)
Q Consensus 485 -------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 547 (727)
....+.+.|.++..+|-++ ....+..++.+.|.. -.+.++|..+-.+|.++.
T Consensus 166 p~~g~p~~~~~~~~~~kDMdka~qfa~kACel-----------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 166 PGEGKPLDRAELGSLSKDMDKALQFAIKACEL-----------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred CCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc-----------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 3335566676666666655 124456666666643 236788888888888877
Q ss_pred HhC
Q 004848 548 NDA 550 (727)
Q Consensus 548 ~~~ 550 (727)
...
T Consensus 235 ~e~ 237 (248)
T KOG4014|consen 235 EEL 237 (248)
T ss_pred HHH
Confidence 643
No 379
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=88.43 E-value=10 Score=32.43 Aligned_cols=87 Identities=11% Similarity=0.106 Sum_probs=59.1
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHH
Q 004848 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM 567 (727)
Q Consensus 488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 567 (727)
+.-..-..++++++..+...-.-.+++....+|...+.... .+.+.|...... +.....+..|...|..
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~-----~IG~~~A~fY~~wA~~ 108 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK-----GIGTKLALFYEEWAEF 108 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH-----TTSTTBHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc-----CccHHHHHHHHHHHHH
Confidence 55666678899999988664223345555666655555322 677777755443 3334457788899999
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 004848 568 YYMLGNYSDSYDSFKNAI 585 (727)
Q Consensus 568 ~~~~g~~~~A~~~~~~al 585 (727)
+...|++.+|...|+.++
T Consensus 109 le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 109 LEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhC
Confidence 999999999999998764
No 380
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=88.32 E-value=17 Score=32.77 Aligned_cols=150 Identities=13% Similarity=0.084 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-
Q 004848 414 HLVLASMTMIANDQDAEVASVDCSIGDTYLS-----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT- 487 (727)
Q Consensus 414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~- 487 (727)
.|+.|..++..+-+....+...+.+|..++. .++...|++.+..+.+. ..+.+...+|.++..-
T Consensus 50 nF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC~~~gLl~~~g~ 119 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQACRYLGLLHWNGE 119 (248)
T ss_pred HHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHHhhhhhhhccCc
Confidence 3444444444444455555666667765543 45788888888887653 3345566677766542
Q ss_pred ----C--ChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHH------------------------hcccHHHHH
Q 004848 488 ----G--KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE------------------------SMNELEQAI 537 (727)
Q Consensus 488 ----g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~------------------------~~g~~~~A~ 537 (727)
+ +..+|+.++.++-.+- ...+.+.|...|+ -..+.+.|.
T Consensus 120 ~~r~~dpd~~Ka~~y~traCdl~-----------~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~ 188 (248)
T KOG4014|consen 120 KDRKADPDSEKAERYMTRACDLE-----------DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKAL 188 (248)
T ss_pred CCccCCCCcHHHHHHHHHhccCC-----------CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHH
Confidence 2 2667888888776551 1222333333333 234555565
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCC
Q 004848 538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML----GNYSDSYDSFKNAISKLRAIGE 593 (727)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~ 593 (727)
++--+|-++. +..+..++.+.|..- .+.++|..+-.+|.++.++...
T Consensus 189 qfa~kACel~---------~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~k 239 (248)
T KOG4014|consen 189 QFAIKACELD---------IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELRK 239 (248)
T ss_pred HHHHHHHhcC---------ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHHc
Confidence 5555554431 123445566665432 3678888888888888766543
No 381
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=88.18 E-value=30 Score=36.22 Aligned_cols=141 Identities=15% Similarity=0.082 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004848 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM--GVMYYMLGNYSDSYDSFKNAISKLRAIGERK 595 (727)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 595 (727)
......+..++..++|..|...+...... .++... ...+..+ |..++..-++.+|.++++..+.....+
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l---- 202 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR---LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL---- 202 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh----
Confidence 44556677788999999999999998865 222222 2334444 555677889999999999877642110
Q ss_pred chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 004848 596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (727)
Q Consensus 596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (727)
......+..+.. .-++...+.............-.+.....++..|.--...|+|+.|+..+-+++++.-+.
T Consensus 203 -~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~ 274 (379)
T PF09670_consen 203 -NQEREGLKELVE-------VLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQH 274 (379)
T ss_pred -HhHHHHHHHHHH-------HHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 000111111111 112222222222221110000011122223333333456899999999999999876543
No 382
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.18 E-value=33 Score=35.14 Aligned_cols=126 Identities=17% Similarity=0.090 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH
Q 004848 413 EHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRE 492 (727)
Q Consensus 413 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 492 (727)
+.++.-++..+.+......-.++..+|..|...|+++.|++.|-++...+.. ....+..+.++-.+-..+|+|..
T Consensus 131 e~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~h 205 (466)
T KOG0686|consen 131 EKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGH 205 (466)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhh
Confidence 3333333434444445556678899999999999999999999998887654 35567888888888889999998
Q ss_pred HHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 004848 493 SKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544 (727)
Q Consensus 493 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (727)
-..+..+|....... ........+.+...-|.+.+.+++|..|..+|-.+.
T Consensus 206 v~sy~~~A~st~~~~-~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 206 VLSYISKAESTPDAN-ENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hhhHHHHHHhCchhh-hhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 888888876652000 000011112234445556666678888888876543
No 383
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.17 E-value=0.64 Score=26.85 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q 004848 643 GVYSNLAGTYDAIGRLDDAIEILE 666 (727)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~ 666 (727)
.+...||.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 367899999999999999999876
No 384
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=87.60 E-value=13 Score=30.93 Aligned_cols=75 Identities=17% Similarity=0.142 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004848 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH-------PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (727)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (727)
+..+|...+..+++-.++-+|++|+.+.++...... .-......+||..+..+|+.+-.++|++-|-+.....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 345677777788888888888888887776631111 1123456789999999999999999998887765554
Q ss_pred CC
Q 004848 508 VP 509 (727)
Q Consensus 508 ~~ 509 (727)
.+
T Consensus 84 iP 85 (140)
T PF10952_consen 84 IP 85 (140)
T ss_pred cc
Confidence 43
No 385
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=87.31 E-value=3.6 Score=43.11 Aligned_cols=103 Identities=14% Similarity=0.053 Sum_probs=78.2
Q ss_pred CCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc---CChhHHHHHHHHhc
Q 004848 216 DKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSL---GQYNEAIPVLEQSI 292 (727)
Q Consensus 216 ~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al 292 (727)
.-|+.+...+..|.-.+..+. ...|+..|.+++... |....+|.+.+.++++. |+.-.|+.-...|+
T Consensus 369 eL~e~ie~~~~egnd~ly~~~-~~~~i~~~s~a~q~~---------~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Al 438 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESI-VSGAISHYSRAIQYV---------PDAIYLLENRAAALMKRKWRGDSYLALRDCHVAL 438 (758)
T ss_pred hchHHHHHHHhhccchhhhHH-HHHHHHHHHHHhhhc---------cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhc
Confidence 346677777777777777776 888999999988764 44577788888888775 45556777777777
Q ss_pred ccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848 293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (727)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 337 (727)
++. ...+.+++.|+.++..++++.+|+.+...+...
T Consensus 439 rln---------~s~~kah~~la~aL~el~r~~eal~~~~alq~~ 474 (758)
T KOG1310|consen 439 RLN---------PSIQKAHFRLARALNELTRYLEALSCHWALQMS 474 (758)
T ss_pred cCC---------hHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhc
Confidence 775 234567999999999999999999988766554
No 386
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=87.04 E-value=3.7 Score=43.06 Aligned_cols=89 Identities=19% Similarity=0.113 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004848 615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694 (727)
Q Consensus 615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~ 694 (727)
....|+..|.+++.. .|+....|.+.|.++.+.+=...+...++.+.... .-+|....+++.|++++
T Consensus 389 ~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Al-----rln~s~~kah~~la~aL 455 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVAL-----RLNPSIQKAHFRLARAL 455 (758)
T ss_pred HHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhc-----cCChHHHHHHHHHHHHH
Confidence 456778888888877 77888888888888887654444444444333222 23788899999999999
Q ss_pred HHhCChhHHHHHHHHHHHHHhhh
Q 004848 695 KEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 695 ~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
..++++.+|+ .+...+....|.
T Consensus 456 ~el~r~~eal-~~~~alq~~~Pt 477 (758)
T KOG1310|consen 456 NELTRYLEAL-SCHWALQMSFPT 477 (758)
T ss_pred HHHhhHHHhh-hhHHHHhhcCch
Confidence 9999999999 888888777773
No 387
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=87.03 E-value=16 Score=30.41 Aligned_cols=75 Identities=12% Similarity=0.076 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCcc-------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 004848 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD-------TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (727)
Q Consensus 603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (727)
+..+|...++.+++-.++-+|++|+.+.++.......+ .+....+||..+..+|+.+-.+.|++-|-+....+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 44678888899999999999999999988874221111 12356799999999999999999999887765554
Q ss_pred cC
Q 004848 676 LG 677 (727)
Q Consensus 676 ~g 677 (727)
..
T Consensus 84 iP 85 (140)
T PF10952_consen 84 IP 85 (140)
T ss_pred cc
Confidence 43
No 388
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.01 E-value=64 Score=37.87 Aligned_cols=200 Identities=11% Similarity=0.045 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHH------hccc----HHHHHHHHHHH
Q 004848 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE------SMNE----LEQAIKLLQKA 543 (727)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~------~~g~----~~~A~~~~~~a 543 (727)
....+.+|.+|...|+..+|+.+|.+|..-..+ . .++..+..-.. ..|+ ...|..||.++
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge-----~-----~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv 989 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGE-----G-----NALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKV 989 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhcccc-----H-----HHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHH
Confidence 456678899999999999999999999876422 1 12222211100 2232 22356777777
Q ss_pred HHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004848 544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF 623 (727)
Q Consensus 544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 623 (727)
++++... +-.+.+..+..+|++. .++.. +..+..+..+=.-+..+|.+-+|...+
T Consensus 990 ~rlle~h---------------------n~~E~vcQlA~~AIe~---l~dd~-ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen 990 VRLLEEH---------------------NHAEEVCQLAVKAIEN---LPDDN-PSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred HHHHHHh---------------------ccHHHHHHHHHHHHHh---CCCcc-hhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 7766544 3344455555555543 33333 445666666666777777777776554
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHH-----HHHHHHH-HHHHhcCCCChhHHHHHHHHHHHHHHh
Q 004848 624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE-----ILEFVVG-IREEKLGTANPDVDDEKRRLAELLKEA 697 (727)
Q Consensus 624 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-----~~~~al~-~~~~~~g~~~p~~~~~~~~La~~~~~~ 697 (727)
-+-- +......++..|-.+++..|.++.=.+ +-++... +.++..-...-.....|..|=-.+...
T Consensus 1045 ~~np---------dserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~R 1115 (1480)
T KOG4521|consen 1045 LRNP---------DSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVAR 1115 (1480)
T ss_pred HcCC---------cHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhh
Confidence 3311 112233467778888888887653322 1112222 111111111122233444455567788
Q ss_pred CChhHHHHHHHHHHHHHhhh
Q 004848 698 GRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 698 g~~~~A~~~~l~~al~~~p~ 717 (727)
+++.+|..-.|+-+..+..+
T Consensus 1116 hN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1116 HNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred cchhHHHHHHHHHHHHhccc
Confidence 99998886778888777665
No 389
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.89 E-value=34 Score=33.82 Aligned_cols=109 Identities=15% Similarity=0.039 Sum_probs=70.3
Q ss_pred hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCC----CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ----QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (727)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (727)
....+.+...||.+|.+.++|..|-..+.-. +...|. .......+..+|.+|...++..+|..+..++--+.
T Consensus 99 eEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I----~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~ 174 (399)
T KOG1497|consen 99 EEQVASIRLHLASIYEKEQNWRDAAQVLVGI----PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQ 174 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc----CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 3446677889999999999999887665422 111121 12345667899999999999999999998875544
Q ss_pred HHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004848 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (727)
Q Consensus 589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 627 (727)
... .++......-...|+++-..++|-+|...|-+..
T Consensus 175 a~~--~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 175 AES--SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred hcc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 2222222233334566666777777666665443
No 390
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=86.67 E-value=8.5 Score=32.74 Aligned_cols=69 Identities=19% Similarity=0.116 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 004848 641 TLGVYSNLAGTYDAIGR---LDDAIEILEFVVGIREEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (727)
Q Consensus 641 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~g~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (727)
.....+++|+++....+ ..+.+.+++..+. ..+| ...+..+.|+.-+.+.|+|+.++ .++..+|+..|
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-------~~~~~~rRe~lyYLAvg~yRlkeY~~s~-~yvd~ll~~e~ 102 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-------SAHPERRRECLYYLAVGHYRLKEYSKSL-RYVDALLETEP 102 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-------hcCcccchhhhhhhHHHHHHHhhHHHHH-HHHHHHHhhCC
Confidence 44578999999987665 4455555555553 2244 44677889999999999999999 99999999988
Q ss_pred h
Q 004848 717 R 717 (727)
Q Consensus 717 ~ 717 (727)
+
T Consensus 103 ~ 103 (149)
T KOG3364|consen 103 N 103 (149)
T ss_pred C
Confidence 6
No 391
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=86.60 E-value=39 Score=35.36 Aligned_cols=65 Identities=15% Similarity=-0.016 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (727)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 337 (727)
....+..++..++|..|..+|....... .+... .........|..++..-++.+|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl---~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRL---PGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC---Cchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4455667788999999999999987641 11111 12222334455567788899999999987765
No 392
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=86.17 E-value=1.4 Score=42.55 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=54.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 647 NLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+.|.-..+.|+.++|..+|+.|+.+ .|..++++..+|.+.....+.-+|- .+|-+||.++|-
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~AD-q~Y~~ALtisP~ 182 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEAD-QCYVKALTISPG 182 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhh-hhhheeeeeCCC
Confidence 3444456789999999999999987 5888889999999999999999999 999999999885
No 393
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.08 E-value=2.1 Score=28.55 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 004848 646 SNLAGTYDAIGRLDDAIEILEFVVG 670 (727)
Q Consensus 646 ~~la~~~~~~g~~~~A~~~~~~al~ 670 (727)
+.||.+|..+|+.+.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6799999999999999999999985
No 394
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=86.04 E-value=96 Score=38.20 Aligned_cols=228 Identities=13% Similarity=0.002 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc---C------------------
Q 004848 348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK---G------------------ 406 (727)
Q Consensus 348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~---g------------------ 406 (727)
..++....+|..+...|++.+|+..|..|+...+...+ ..+.+.++-.++.+.... |
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D--~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~ 317 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSND--YLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSS 317 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCc--HhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCc
Confidence 34566778999999999999999999999999988764 355555555554333211 0
Q ss_pred ------------------------------------------CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 004848 407 ------------------------------------------DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS 444 (727)
Q Consensus 407 ------------------------------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 444 (727)
.+++|+.+|.++.......-...-..++...++.++..
T Consensus 318 ~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~ 397 (1185)
T PF08626_consen 318 TSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVA 397 (1185)
T ss_pred cCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHH
Confidence 13444455544432111111222345566667777777
Q ss_pred cC--------------------CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848 445 LS--------------------RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (727)
Q Consensus 445 ~g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (727)
.. .-.++..++.+++...-... ...+....+..+|.+|...|-..++.-+++.++..+
T Consensus 398 ~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 398 QHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred hhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 66 67778888888877643322 245668899999999999999999888888887775
Q ss_pred hcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC--CC-CCccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004848 505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA--PG-QQSTVAGIEAQMGVMYYMLGNYSDSYDSF 581 (727)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 581 (727)
-... ..........+..+...|.-..+.+.- ...... .+ .......++..+-.+....+++..+..+.
T Consensus 476 ~~~l-~~~~~s~~~lL~~~~~~Ygi~~~~~~~--------~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~ 546 (1185)
T PF08626_consen 476 VPGL-IHWHQSYRSLLEELCKGYGISLDPESS--------SEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLRFS 546 (1185)
T ss_pred cccc-CCcchHHHHHHHHHhccCcccCCcccc--------ccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3311 111111112222222222221111100 000000 00 01122344555566677788888888887
Q ss_pred HHHHHHH
Q 004848 582 KNAISKL 588 (727)
Q Consensus 582 ~~al~~~ 588 (727)
-..+..+
T Consensus 547 ~~LL~~~ 553 (1185)
T PF08626_consen 547 SLLLRTY 553 (1185)
T ss_pred HHHHHHH
Confidence 7766654
No 395
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=85.89 E-value=19 Score=38.45 Aligned_cols=75 Identities=13% Similarity=0.070 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004848 430 EVASVDCSIGDTYLS--LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (727)
Q Consensus 430 ~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (727)
....++.+||.+-.. ...-..++.+|.+|+...+..++ .....-|..+|..|++.++|.+|+..+-+|-...+..
T Consensus 275 ~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~---n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~Y 351 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYN---NHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKY 351 (618)
T ss_dssp T-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCT---T--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTS
T ss_pred hCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhc---CCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334445555554432 23345678999999999998884 3345678889999999999999999999998887664
No 396
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.82 E-value=8.5 Score=33.48 Aligned_cols=85 Identities=8% Similarity=-0.069 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCC
Q 004848 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (727)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (727)
...+..+...-...++.+++...+...--+ .|.....-..-|.++...|++.+|+..|+...+-
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~-------- 73 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS-------- 73 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc--------
Confidence 334444455555578888887776654444 6777888888889999999999998888876544
Q ss_pred ChHhHHHHHHHHHHHHHhcccH
Q 004848 512 PPEEIASGLTDVSSIYESMNEL 533 (727)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~ 533 (727)
.+......-.++.|+..+|+.
T Consensus 74 -~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 74 -AGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred -CCCchHHHHHHHHHHHhcCCh
Confidence 112233444566677666664
No 397
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=85.43 E-value=1.1 Score=41.45 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=50.9
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 609 ACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 609 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
...+.++.+.|.+.|.+++.+ -|+....|+.+|....+.|+++.|...|++.+++
T Consensus 4 ~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 445678999999999999999 8999999999999999999999999999999986
No 398
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.24 E-value=18 Score=35.51 Aligned_cols=70 Identities=10% Similarity=0.156 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004848 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (727)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (727)
....++..++..+...|+++.++..+++.+.. +|..-..|..+-..|...|+...|+..|++.-......
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~ed 220 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEE 220 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhh
Confidence 44567888999999999999999999999998 89999999999999999999999999999988864443
No 399
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=84.84 E-value=6.9 Score=29.93 Aligned_cols=50 Identities=22% Similarity=0.065 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004848 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV 270 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~ 270 (727)
.+..+...|..+-..|+ |++|+.+|.+|+..+.......+++..-..+..
T Consensus 5 ~a~~l~~~Ave~D~~g~-y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ 54 (77)
T cd02683 5 AAKEVLKRAVELDQEGR-FQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQ 54 (77)
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 35567788888888997 999999999999999887766666555444443
No 400
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=84.51 E-value=47 Score=33.26 Aligned_cols=96 Identities=18% Similarity=0.205 Sum_probs=70.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004848 400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR 479 (727)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 479 (727)
.+..+.++.++|++++++..........+.........+|.++...|+..++.+.+...-.......+- .+.....++.
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v-~~~Vh~~fY~ 161 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV-TSNVHSSFYS 161 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC-ChhhhhhHHH
Confidence 344566799999999999988887777777778888899999999999999999998887776655432 3434455555
Q ss_pred HHHHH-HHcCChHHHHHH
Q 004848 480 LADMY-NRTGKLRESKSY 496 (727)
Q Consensus 480 la~~~-~~~g~~~~A~~~ 496 (727)
++.-| ...|++......
T Consensus 162 lssqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 162 LSSQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 65544 456777654333
No 401
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=84.42 E-value=12 Score=31.88 Aligned_cols=87 Identities=13% Similarity=0.112 Sum_probs=54.5
Q ss_pred CChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 004848 279 GQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAE 358 (727)
Q Consensus 279 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 358 (727)
+.-..-..++++++........-.+....+.+|...+.. -. .+...|..+.... . ....+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~----~~--~~~~if~~l~~~~---I---G~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADL----SS--DPREIFKFLYSKG---I---GTKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT----BS--HHHHHHHHHHHHT---T---STTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH----cc--CHHHHHHHHHHcC---c---cHHHHHHHHHHHH
Confidence 445556677777777653322222222233334444432 22 7888888765541 1 2467788999999
Q ss_pred HHHHhcCHHHHHHHHHHHH
Q 004848 359 AHVQALQFSEAQKFCQMAL 377 (727)
Q Consensus 359 ~~~~~g~~~~A~~~~~~al 377 (727)
.+...|++.+|.+.|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998875
No 402
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=83.89 E-value=5.6 Score=29.65 Aligned_cols=49 Identities=24% Similarity=0.188 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004848 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV 270 (727)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~ 270 (727)
+..+...|..+-..|+ +++|+++|.+|+..+-......+++..-..+..
T Consensus 5 A~~~~~~Av~~D~~g~-~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~ 53 (69)
T PF04212_consen 5 AIELIKKAVEADEAGN-YEEALELYKEAIEYLMQALKSESNPERRQALRQ 53 (69)
T ss_dssp HHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 4567788888889997 999999999999998776554455544444433
No 403
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.52 E-value=8.6 Score=39.43 Aligned_cols=122 Identities=16% Similarity=0.091 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC---CCccHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHH
Q 004848 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGP---YHPDTLGVYSNLAGTYDAIGR---LDDAIEILEFVVGIRE 673 (727)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~ 673 (727)
+..++..|++.+....|.+|+.++-.|-+.+...... .-..++..-..+.+||+.+.+ ..+|..-+..|-+-+.
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 4556667777778888888888877776665432110 011222233456678877764 4566666666655555
Q ss_pred HhcC-----------CCChhHHH---HHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh--cCCCC
Q 004848 674 EKLG-----------TANPDVDD---EKRRLAELLKEAGRVRSRKAQSLETLLDANSR--VNNDG 722 (727)
Q Consensus 674 ~~~g-----------~~~p~~~~---~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~--~~~~~ 722 (727)
..+| +..|+.+. .+..-|.+.+.+|+.++|. ++|+.+...--+ ++++.
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAy-e~le~a~~~l~elki~d~~ 306 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAY-EALESAHAKLLELKINDET 306 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHHeeccchH
Confidence 5444 44555433 3445688899999999999 999998876655 55443
No 404
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.01 E-value=69 Score=34.06 Aligned_cols=164 Identities=11% Similarity=0.063 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhH
Q 004848 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516 (727)
Q Consensus 437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 516 (727)
.+-.++...-.+.-....+.+.+.+ ...-.++..++.+|... ..++-...+++..+.. ...
T Consensus 71 ~~~~~f~~n~k~~~veh~c~~~l~~---------~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d---------fnD 131 (711)
T COG1747 71 TLLTIFGDNHKNQIVEHLCTRVLEY---------GESKMALLELLQCYKEN-GNEQLYSLWERLVEYD---------FND 131 (711)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHh---------cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc---------chh
Confidence 3344444445555666777888876 34457888999999988 5566677777777762 222
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004848 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596 (727)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 596 (727)
...-..|+..|.. ++...+..+|.+++...-.. .....+-.+|..+-.. --.+.+.-+.... ++....+...
T Consensus 132 vv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~-~q~~~i~evWeKL~~~--i~dD~D~fl~l~~---kiqt~lg~~~- 203 (711)
T COG1747 132 VVIGRELADKYEK-IKKSKAAEFFGKALYRFIPR-RQNAAIKEVWEKLPEL--IGDDKDFFLRLQK---KIQTKLGEGR- 203 (711)
T ss_pred HHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcch-hhhhhHHHHHHHHHHh--ccccHHHHHHHHH---HHHHhhccch-
Confidence 3444567777766 88899999999998765432 1122233334333221 1223333222222 2222222221
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (727)
...++..+-.-|....++++|++.+.-.++.
T Consensus 204 --~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 204 --GSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred --HHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 2233444445666778999999999877766
No 405
>PRK09169 hypothetical protein; Validated
Probab=82.88 E-value=1.5e+02 Score=37.99 Aligned_cols=17 Identities=6% Similarity=0.149 Sum_probs=8.5
Q ss_pred HHHHHHHHhCCHHHHHH
Q 004848 313 QLGDTYAMLGQLENSLM 329 (727)
Q Consensus 313 ~la~~~~~~g~~~~A~~ 329 (727)
.+++++..++++.+...
T Consensus 332 ~vAN~LNALSKWp~~~~ 348 (2316)
T PRK09169 332 AVANALNALSKWPDEEA 348 (2316)
T ss_pred HHHHHHHHHhcCCCcHH
Confidence 35555555555544433
No 406
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.76 E-value=5.6 Score=41.27 Aligned_cols=72 Identities=14% Similarity=0.043 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004848 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381 (727)
Q Consensus 310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (727)
++..|.+++..+|+|..|++.++-.---.+.++..-.+-...+++.+|.+|+..++|.+|++.|...+-...
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~ 195 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQ 195 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999998765322212223233345667889999999999999999999998876543
No 407
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=82.54 E-value=9.6 Score=28.98 Aligned_cols=51 Identities=20% Similarity=0.095 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004848 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI 271 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l 271 (727)
.+..++..|...-..|+ +++|+.+|.+|+..+-......+++.....+...
T Consensus 5 ~A~~l~~~Av~~D~~g~-y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k 55 (75)
T cd02678 5 KAIELVKKAIEEDNAGN-YEEALRLYQHALEYFMHALKYEKNPKSKESIRAK 55 (75)
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 34567788888888887 9999999999999998876655665544444433
No 408
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.28 E-value=1.9e+02 Score=38.77 Aligned_cols=138 Identities=16% Similarity=0.178 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCC
Q 004848 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (727)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (727)
.+.+....|.+....|-++.++..+.+...+- ...-.+...-+..-+.+|.... ..+..+++.....--
T Consensus 2735 ~A~~in~fakvArkh~l~~vcl~~L~~iytlp-----~veiqdaF~K~req~~c~l~~~------~e~~~gLevi~sTNl 2803 (3550)
T KOG0889|consen 2735 LAWAINRFAKVARKHGLPDVCLNQLAKIYTLP-----NVEIQDAFQKLREQAKCYLQNK------NELKTGLEVIESTNL 2803 (3550)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhccC-----cchHHHHHHHHHHHHHHHhcCh------HHHHHHHHHHhcccH
Confidence 34555566666667777777766666655441 1111111112222233343332 223333333332200
Q ss_pred ---CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHh----CC----HHHHHH
Q 004848 553 ---QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR----YS----INEAVE 621 (727)
Q Consensus 553 ---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~----~~~A~~ 621 (727)
.....+..+...|..+.+.|+.++|-..|..|+++... ...+|...|.....+ +. -..|+.
T Consensus 2804 ~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~--------l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avs 2875 (3550)
T KOG0889|consen 2804 MYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDG--------LGKAWAEWGKYLDNRFNKEPVNISFACNAVS 2875 (3550)
T ss_pred HHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHhccCcccHHHHHHHH
Confidence 11234667778899999999999999999999998543 345666555544321 11 234566
Q ss_pred HHHHHHHH
Q 004848 622 LFEEARSI 629 (727)
Q Consensus 622 ~~~~al~~ 629 (727)
+|-+|...
T Consensus 2876 CyLqA~~~ 2883 (3550)
T KOG0889|consen 2876 CYLQAARL 2883 (3550)
T ss_pred HHHHHhcc
Confidence 56666554
No 409
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.78 E-value=97 Score=34.92 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=15.8
Q ss_pred HHHHHHHcCChhHHHHHHHH
Q 004848 271 IAAIYCSLGQYNEAIPVLEQ 290 (727)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~ 290 (727)
...+++-.|+|+.|+.++-+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHh
Confidence 34567788999999999988
No 410
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=81.74 E-value=13 Score=28.45 Aligned_cols=49 Identities=20% Similarity=0.160 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004848 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 269 (727)
.+..+...|...-..|+ +++|+.+|.+|++.+.......+++.....+.
T Consensus 7 ~A~~li~~Av~~d~~g~-~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~ 55 (77)
T smart00745 7 KAKELISKALKADEAGD-YEEALELYKKAIEYLLEGIKVESDSKRREAVK 55 (77)
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 34566778888888887 99999999999999988766666555444333
No 411
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.88 E-value=5.7 Score=39.75 Aligned_cols=67 Identities=9% Similarity=0.067 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 004848 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFC 373 (727)
Q Consensus 307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 373 (727)
.+.-+...|+-.+.++++++|...|..|..+...++|..+.....+++..|..++..+++..+.-..
T Consensus 40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3455788999999999999999999999999999999999999999999999999988877665443
No 412
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.71 E-value=4.3 Score=40.54 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHH
Q 004848 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK 704 (727)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~ 704 (727)
.-+...|+-...++++++|...|..|..+...++|..|.++..+++..|..++..++.+.++
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788899999999999999999999999999999999999999999999999988776
No 413
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.68 E-value=13 Score=39.96 Aligned_cols=49 Identities=20% Similarity=0.161 Sum_probs=35.5
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004848 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379 (727)
Q Consensus 318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 379 (727)
..+.|+++.|..+..++ +...-|..||.+....+++..|.+++.++.++
T Consensus 647 al~lgrl~iA~~la~e~-------------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA-------------NSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhcCcHHHHHHHHHhh-------------cchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 34566666666554432 23355788999999999999999999988654
No 414
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=80.61 E-value=89 Score=33.75 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848 557 VAGIEAQMGVMYYML--GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (727)
Q Consensus 557 ~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (727)
+..++.+||.+-... ..-..++.+|.+|+...+......+. .-|..+|-.|++.+++.+|+..+-+|-...+.
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555544322 23456789999999999988776543 46777899999999999999999999877554
No 415
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.57 E-value=2.4 Score=28.25 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004848 687 KRRLAELLKEAGRVRSRKAQSLETLLDA 714 (727)
Q Consensus 687 ~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (727)
.+.||.+|..+|+.+.|. ..+++++..
T Consensus 2 kLdLA~ayie~Gd~e~Ar-~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGAR-ELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHH-HHHHHHHHc
Confidence 468999999999999999 999999853
No 416
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=79.57 E-value=16 Score=27.79 Aligned_cols=53 Identities=23% Similarity=0.118 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 004848 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAI 274 (727)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~ 274 (727)
+..+...|...-..|+ +++|+.+|..|+..+.......+++..-..+......
T Consensus 6 a~~l~~~Av~~D~~g~-~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~ 58 (75)
T cd02656 6 AKELIKQAVKEDEDGN-YEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKE 58 (75)
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 4456677777778886 9999999999999998876655555544444433333
No 417
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=79.31 E-value=16 Score=27.76 Aligned_cols=52 Identities=21% Similarity=0.083 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004848 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIA 272 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la 272 (727)
.+..++..|...-..|+ |++|+.+|.+|+..+-......+++..-..+....
T Consensus 5 ~Ai~lv~~Av~~D~~g~-y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~ 56 (75)
T cd02684 5 KAIALVVQAVKKDQRGD-AAAALSLYCSALQYFVPALHYETDAQRKEALRQKV 56 (75)
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 34567788888888886 99999999999999988776666666544444333
No 418
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.24 E-value=36 Score=33.29 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 004848 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP 639 (727)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 639 (727)
.+...+..|...|.+.+|+.+.++++.+ ++.....+..+-.++...|+--.|...|++.-+.++...|-+-.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd 352 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD 352 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence 3455678889999999999999999986 44556778888899999999999999999988888777775443
Q ss_pred cH
Q 004848 640 DT 641 (727)
Q Consensus 640 ~~ 641 (727)
+.
T Consensus 353 ds 354 (361)
T COG3947 353 DS 354 (361)
T ss_pred hh
Confidence 33
No 419
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.73 E-value=29 Score=29.68 Aligned_cols=65 Identities=8% Similarity=-0.061 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848 393 ADRRLMGLICETKGD---HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (727)
Q Consensus 393 ~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (727)
.+.++++.++....+ ..+.+..++..+. ...+...-...+.|+..+++.++|+.++.+.+..++.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 456777777766554 4556666665543 2233444567788999999999999999999998887
No 420
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=77.54 E-value=20 Score=34.10 Aligned_cols=103 Identities=15% Similarity=0.106 Sum_probs=67.0
Q ss_pred HHHHhcccHHHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhH
Q 004848 525 SIYESMNELEQAIKLLQKALKIYNDAPGQQS-----TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF 599 (727)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 599 (727)
.-.+..|+++.|+++...|++.....|+... .++.-...-+......|..-+. +|...+.......+-++...
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~--~~~~~~~~l~~~~dmpd~vr 168 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP--YFLRVFLDLTTEWDMPDEVR 168 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHhcCCCChHHH
Confidence 3456889999999999999998665544322 2333344455555666653222 22333333333344455667
Q ss_pred HHHHHHHHHHHH---------HhCCHHHHHHHHHHHHHH
Q 004848 600 GVALNQMGLACV---------QRYSINEAVELFEEARSI 629 (727)
Q Consensus 600 ~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~ 629 (727)
+..+-.+|..++ ..++...|+.++++|+.+
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l 207 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQL 207 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHh
Confidence 778888888874 456788999999999998
No 421
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=77.16 E-value=1.8 Score=44.45 Aligned_cols=71 Identities=23% Similarity=0.377 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004848 625 EARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK 695 (727)
Q Consensus 625 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~ 695 (727)
+++-+.+++.++.||+........|-+|..+|+++.-+++++-|+.+.++.+.|-.|.+...+...++++.
T Consensus 320 qaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS 390 (615)
T KOG0508|consen 320 QALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS 390 (615)
T ss_pred HHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence 56667778889999998766677889999999999999999999999999999999999988888887764
No 422
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.85 E-value=1.4e+02 Score=33.95 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=29.0
Q ss_pred CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 004848 218 PGLGPLLLKQARELISSGDNPQKALELALRAAKSF 252 (727)
Q Consensus 218 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~ 252 (727)
...+..+...|..++..|+ +++|...|-+++...
T Consensus 365 d~~~~i~~kYgd~Ly~Kgd-f~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 365 DTLAEIHRKYGDYLYGKGD-FDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHcccC
Confidence 3457788899999999997 999999999988653
No 423
>PF12854 PPR_1: PPR repeat
Probab=75.77 E-value=6.8 Score=24.30 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 004848 643 GVYSNLAGTYDAIGRLDDAIEILEF 667 (727)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~ 667 (727)
.+|..|...|.+.|+.++|.++|++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4889999999999999999999875
No 424
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.93 E-value=54 Score=37.87 Aligned_cols=189 Identities=14% Similarity=0.099 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHhCCCC
Q 004848 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL--EQAIKLLQKALKIYNDAPGQ 553 (727)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~ 553 (727)
-+..|+.+|...|++++|++++.+...-.. .........+-.+-..+...+.. +-..++-.-.+...+.. +.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~-----~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~-gi 579 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDS-----DTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEA-GI 579 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccc-----ccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchh-he
Confidence 466789999999999999999998876431 01222223333344444444443 44455544444333222 10
Q ss_pred C------ccHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH-HHHHhCCHHHHHHH-HH
Q 004848 554 Q------STVAG-IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL-ACVQRYSINEAVEL-FE 624 (727)
Q Consensus 554 ~------~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~-~~ 624 (727)
. ...+. +-.....-|......+-++.|++.++...+.....-+......|..... .-...++-++|.+. ++
T Consensus 580 ~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~r 659 (877)
T KOG2063|consen 580 QIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVR 659 (877)
T ss_pred eeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHH
Confidence 0 00001 1111223355667788889999988876543222211111111111111 11112233455555 23
Q ss_pred HHHHHHHHhcCCCCcc-------HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848 625 EARSILEQECGPYHPD-------TLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (727)
Q Consensus 625 ~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (727)
+-+..+.......+|. ....|...+.++.++|+.++|+..|-..+.
T Consensus 660 ekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 660 EKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 3232323222222222 134677888899999999999999877765
No 425
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.78 E-value=97 Score=31.10 Aligned_cols=28 Identities=11% Similarity=-0.035 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004848 354 RYLAEAHVQALQFSEAQKFCQMALDIHK 381 (727)
Q Consensus 354 ~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (727)
..-|.+++..++|.+....+..+-....
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~K 89 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFK 89 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHh
Confidence 3457788888888887777665544433
No 426
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=74.67 E-value=95 Score=30.89 Aligned_cols=188 Identities=12% Similarity=-0.044 Sum_probs=100.8
Q ss_pred cccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 004848 211 SEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQ 290 (727)
Q Consensus 211 ~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 290 (727)
.+.-.-.|+..+.++..|...+.-|. |..|-.++-.-..+. ..+++....++...-..-.-..+|+.|++-+.+
T Consensus 119 ~e~ynf~~e~i~~lykyakfqyeCGN-Y~gAs~yLY~~r~l~-----~~~d~n~lsalwGKlASEIL~qnWd~A~edL~r 192 (432)
T KOG2758|consen 119 QEHYNFTPERIETLYKYAKFQYECGN-YSGASDYLYFYRALV-----SDPDRNYLSALWGKLASEILTQNWDGALEDLTR 192 (432)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhccC-cccHHHHHHHHHHhc-----CCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444568899999999999999995 999988765444433 344454455554444445567889999999888
Q ss_pred hcccchhcc-CccchHHHHHHHHHH--HHHHHH-hCCHHHHHHHH------HHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 004848 291 SIEIPVIEE-GQEHALAKFAGHMQL--GDTYAM-LGQLENSLMCY------TTGLEVQKQVLGETDPRVGETCRYLAEAH 360 (727)
Q Consensus 291 al~~~~~~~-~~~~~~~~~~~~~~l--a~~~~~-~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~ 360 (727)
..+...... ...-....-.+|..- -.+++. -+--+.-++.| -.+++. ..+..+..|+.+.
T Consensus 193 Lre~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt----------~cPhllRYLatAv 262 (432)
T KOG2758|consen 193 LREYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQT----------SCPHLLRYLATAV 262 (432)
T ss_pred HHHHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHh----------hCHHHHHHHHHHh
Confidence 766531111 110001111112111 111111 11112222221 122222 2344566666665
Q ss_pred HHh-cCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848 361 VQA-LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT 421 (727)
Q Consensus 361 ~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 421 (727)
.-. .+...+++-+-+.+....-... ++ ....-.|.+-.-+|+.|...++++...
T Consensus 263 vtnk~~rr~~lkdlvkVIqqE~ysYk--DP-----iteFl~clyvn~DFdgAq~kl~eCeeV 317 (432)
T KOG2758|consen 263 VTNKRRRRNRLKDLVKVIQQESYSYK--DP-----ITEFLECLYVNYDFDGAQKKLRECEEV 317 (432)
T ss_pred hcchHhhHHHHHHHHHHHHHhccccC--Cc-----HHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 544 5666777777777765433221 11 233444556667888888888777543
No 427
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=74.50 E-value=33 Score=26.16 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=25.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004848 645 YSNLAGTYDAIGRLDDAIEILEFVVGIREE 674 (727)
Q Consensus 645 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 674 (727)
+...|.-+...|++++|+.+|..+++.+..
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 445556667889999999999999999877
No 428
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=74.29 E-value=57 Score=35.31 Aligned_cols=95 Identities=19% Similarity=0.136 Sum_probs=74.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHH-HHHHHHHhcCCCChhHH
Q 004848 606 MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEF-VVGIREEKLGTANPDVD 684 (727)
Q Consensus 606 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~~g~~~p~~~ 684 (727)
+...+...+....+.-.+..++.. +|....++.+|+......|....+...+.. +... .|.+.
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~--------~~~~~ 136 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEWL--------SPDNA 136 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--------CcchH
Confidence 666777788888888888888887 888889999999998888877777666655 4433 34444
Q ss_pred HHHHH------HHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 685 DEKRR------LAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 685 ~~~~~------La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
..... ++..+..+|+..++. ..++++.++.|.
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~l~~~~d~~p~ 174 (620)
T COG3914 137 EFLGHLIRFYQLGRYLKLLGRTAEAE-LALERAVDLLPK 174 (620)
T ss_pred HHHhhHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhhhh
Confidence 44444 488899999999999 999999998887
No 429
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=74.06 E-value=24 Score=34.32 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 004848 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677 (727)
Q Consensus 598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g 677 (727)
.......++=..+...++++.|..+.++.+.+ +|....-+...|.+|.++|.+.-|++-+...++.+
T Consensus 179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l--------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~----- 245 (269)
T COG2912 179 ILSRLLRNLKAALLRELQWELALRVAERLLDL--------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC----- 245 (269)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh--------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC-----
Confidence 34556677778888999999999999999998 78777778889999999999999999999988764
Q ss_pred CCChhHHHHHHHHHHH
Q 004848 678 TANPDVDDEKRRLAEL 693 (727)
Q Consensus 678 ~~~p~~~~~~~~La~~ 693 (727)
++.|....+...+..+
T Consensus 246 P~~~~a~~ir~~l~~l 261 (269)
T COG2912 246 PDDPIAEMIRAQLLEL 261 (269)
T ss_pred CCchHHHHHHHHHHHH
Confidence 5555555444444443
No 430
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=74.00 E-value=2e+02 Score=34.29 Aligned_cols=91 Identities=15% Similarity=0.184 Sum_probs=49.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH------HHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 004848 563 QMGVMYYMLGNYSDSYDSFKNAI------SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (727)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (727)
.-|.+|...|+.++|+..|+.+. .+..++...... ....-..|+.-+..++++-+|.+...+.+.
T Consensus 957 ~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-------- 1027 (1265)
T KOG1920|consen 957 EAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILLEYLS-------- 1027 (1265)
T ss_pred HHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHHHHhc--------
Confidence 34566777777777777665433 333333222222 122224566666777777777777776654
Q ss_pred CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004848 637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV 669 (727)
Q Consensus 637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 669 (727)
+|..+-+ +|.+...|++|+.....+-
T Consensus 1028 -d~~~av~------ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1028 -DPEEAVA------LLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred -CHHHHHH------HHhhHhHHHHHHHHHHhcc
Confidence 3433322 3444445666666554443
No 431
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.93 E-value=12 Score=38.79 Aligned_cols=123 Identities=11% Similarity=0.065 Sum_probs=77.4
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004848 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649 (727)
Q Consensus 570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 649 (727)
..|+...|-.-+..++...+. .+......+.+....|+|+.|...+..+-.+. + ....+...+-
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~--------~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~----~----s~~~~~~~~~ 364 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQ--------DPVLIQLRSVIFSHLGYYEQAYQDISDVEKII----G----TTDSTLRCRL 364 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCC--------CchhhHHHHHHHHHhhhHHHHHHHhhchhhhh----c----CCchHHHHHH
Confidence 456766666555555543211 12233445788889999999988887765552 1 1122445555
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848 650 GTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.....+|++++|.....-.+. +.-++.+...--+-.-..+|-++++. .++++++.++|.
T Consensus 365 r~~~~l~r~~~a~s~a~~~l~--------~eie~~ei~~iaa~sa~~l~~~d~~~-~~wk~~~~~~~~ 423 (831)
T PRK15180 365 RSLHGLARWREALSTAEMMLS--------NEIEDEEVLTVAAGSADALQLFDKSY-HYWKRVLLLNPE 423 (831)
T ss_pred HhhhchhhHHHHHHHHHHHhc--------cccCChhheeeecccHHHHhHHHHHH-HHHHHHhccCCh
Confidence 667778888888876665542 12233344444444556678889999 999999988886
No 432
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=73.89 E-value=1e+02 Score=30.80 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=37.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848 440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (727)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (727)
+...+..+..+-+.....++++ +|..+.+|..|+.-- .--..+|..++++|++..
T Consensus 192 Q~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~ 246 (556)
T KOG3807|consen 192 QKAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEE--ATTIVDAERLFKQALKAG 246 (556)
T ss_pred HHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHH
Confidence 3444455566667777778887 788888888777532 233567888888888763
No 433
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.77 E-value=2e+02 Score=34.20 Aligned_cols=184 Identities=13% Similarity=0.092 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------Hh--------cCCC--ChhH-HHHHHHHHHHHHHcCChH
Q 004848 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFK----------TN--------KGEN--HPAV-ASVFVRLADMYNRTGKLR 491 (727)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----------~~--------~~~~--~~~~-~~~~~~la~~~~~~g~~~ 491 (727)
...+.+|.+|...|...+|+.+|.+|..-.- .. .|.. .+.. ...|...-+++...+-.+
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E 1000 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAE 1000 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHH
Confidence 3456788889999999999999988875311 10 0110 1111 233444455556666667
Q ss_pred HHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc
Q 004848 492 ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML 571 (727)
Q Consensus 492 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~ 571 (727)
.+..+..+|++.. +++.|..+.....+-.-+..+|.+-+|...+-+-- . .......+..+..+++..
T Consensus 1001 ~vcQlA~~AIe~l-----~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~np-------d-serrrdcLRqlvivLfec 1067 (1480)
T KOG4521|consen 1001 EVCQLAVKAIENL-----PDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNP-------D-SERRRDCLRQLVIVLFEC 1067 (1480)
T ss_pred HHHHHHHHHHHhC-----CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCC-------c-HHHHHHHHHHHHHHHHhc
Confidence 7777777776663 44567777777777778888888877765543221 1 122234566777788887
Q ss_pred CCHHHHHH-----HHHHHHH-HHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHH
Q 004848 572 GNYSDSYD-----SFKNAIS-KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVE-LFEEARSI 629 (727)
Q Consensus 572 g~~~~A~~-----~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~ 629 (727)
|.++.-.. +-++... +........+......|..|=..+...+++.+|-. +|+.+..+
T Consensus 1068 g~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl 1132 (1480)
T KOG4521|consen 1068 GELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRL 1132 (1480)
T ss_pred cchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Confidence 77653211 1122222 11111111111112234444445667777776654 45666554
No 434
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=73.52 E-value=19 Score=27.30 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC
Q 004848 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (727)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (727)
+..+...|.-+-..|++.+|+.+|+++++.+.+..
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 44455666667788999999999999999876653
No 435
>PF12854 PPR_1: PPR repeat
Probab=73.24 E-value=7.2 Score=24.19 Aligned_cols=27 Identities=22% Similarity=0.539 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHh
Q 004848 265 VMCLHVIAAIYCSLGQYNEAIPVLEQS 291 (727)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~a 291 (727)
...|..+...|++.|+.++|.++|++.
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 556888999999999999999999864
No 436
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.09 E-value=1.2e+02 Score=31.50 Aligned_cols=142 Identities=12% Similarity=0.017 Sum_probs=75.9
Q ss_pred ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHcCChhHHHH
Q 004848 208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH-VIAAIYCSLGQYNEAIP 286 (727)
Q Consensus 208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~ 286 (727)
+.+.+..+..|+....+ ..|.+-+ -. .+.|.++|+++-..--+. + ..+++ .+|..-+..| ..
T Consensus 197 dL~~E~~PKT~et~s~m-I~Gl~K~--~~-~ERA~~L~kE~~~~k~kv-------~-~~aFN~lI~~~S~~~~-----K~ 259 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIM-IAGLCKF--SS-LERARELYKEHRAAKGKV-------Y-REAFNGLIGASSYSVG-----KK 259 (625)
T ss_pred HHHHhhcCCCchhHHHH-HHHHHHH--Hh-HHHHHHHHHHHHHhhhee-------e-HHhhhhhhhHHHhhcc-----HH
Confidence 34555555555544443 2333333 33 677777777765432111 1 11222 2344444444 34
Q ss_pred HHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCH
Q 004848 287 VLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF 366 (727)
Q Consensus 287 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 366 (727)
+..+.+.... . .++.+++.+-.|...-|+|+.|...+.+++...+++.- .|.....++ +...+.+.++.
T Consensus 260 Lv~EMisqkm------~--Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGV--ePsLsSyh~-iik~f~re~dp 328 (625)
T KOG4422|consen 260 LVAEMISQKM------T--PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGV--EPSLSSYHL-IIKNFKRESDP 328 (625)
T ss_pred HHHHHHHhhc------C--CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC--CcchhhHHH-HHHHhcccCCc
Confidence 4444444321 0 12345777888899999999999999999988777522 355544443 33444444443
Q ss_pred -HHHHHHHHHHH
Q 004848 367 -SEAQKFCQMAL 377 (727)
Q Consensus 367 -~~A~~~~~~al 377 (727)
.-|..++....
T Consensus 329 ~k~as~~i~dI~ 340 (625)
T KOG4422|consen 329 QKVASSWINDIQ 340 (625)
T ss_pred hhhhHHHHHHHH
Confidence 33555554443
No 437
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=72.47 E-value=28 Score=26.44 Aligned_cols=50 Identities=22% Similarity=0.185 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004848 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV 270 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~ 270 (727)
.+..++..|...-..|+ |++|+.+|..++..+.......+++..-..+..
T Consensus 5 ~A~~l~~~Ave~d~~~~-y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~ 54 (75)
T cd02677 5 QAAELIRLALEKEEEGD-YEAAFEFYRAGVDLLLKGVQGDSSPERREAVKR 54 (75)
T ss_pred HHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 45567788888888886 999999999999999887666666555444433
No 438
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=72.20 E-value=31 Score=25.62 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 004848 645 YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677 (727)
Q Consensus 645 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g 677 (727)
+...|.-+...|++++|+.+|.+++..+...+.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~ 40 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLMQALK 40 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 345556667789999999999999998766554
No 439
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=71.93 E-value=7.9 Score=38.49 Aligned_cols=62 Identities=19% Similarity=0.198 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004848 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE 696 (727)
Q Consensus 619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~ 696 (727)
|+.+|.+|+.+ .|.....|+.||.++...|+.-.|+-+|-+++-. ..|. ..+..+|..++.+
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 78899999999 8999999999999999999999999999999853 3454 6788888888877
No 440
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=71.75 E-value=14 Score=23.35 Aligned_cols=31 Identities=13% Similarity=0.023 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCChhHHHHHH--HHHHHHHhh
Q 004848 685 DEKRRLAELLKEAGRVRSRKAQS--LETLLDANS 716 (727)
Q Consensus 685 ~~~~~La~~~~~~g~~~~A~~~~--l~~al~~~p 716 (727)
+.++.+|-.+..+|++++|+ +. |+-+..+++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~-~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAI-HFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHH-HHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHhcc
Confidence 45678899999999999999 99 447776665
No 441
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=71.07 E-value=1.5e+02 Score=32.20 Aligned_cols=129 Identities=12% Similarity=-0.014 Sum_probs=72.0
Q ss_pred CChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHH
Q 004848 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN-AISKLR 589 (727)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~ 589 (727)
+.++....... +...+...+....+...+..++...+.. +.+..+|+......|..-.+...+.. +.....
T Consensus 62 ~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~ 133 (620)
T COG3914 62 DVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPEN-------CPAVQNLAAALELDGLQFLALADISEIAEWLSP 133 (620)
T ss_pred CCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCccc-------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc
Confidence 33444444444 6666677777767766666666554433 34556667666666665555544444 332211
Q ss_pred HhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 004848 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (727)
Q Consensus 590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 657 (727)
..... -. ....++.++......|+..++....+++.++ .|....+...+.....++-.
T Consensus 134 ~~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~--------~p~~~~~~~~~~~~r~~~cs 191 (620)
T COG3914 134 DNAEF-LG-HLIRFYQLGRYLKLLGRTAEAELALERAVDL--------LPKYPRVLGALMTARQEQCS 191 (620)
T ss_pred chHHH-Hh-hHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------hhhhhhhHhHHHHHHHHhcc
Confidence 10000 00 1112333788888889999999999988888 45555555544444444433
No 442
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.02 E-value=16 Score=39.37 Aligned_cols=79 Identities=30% Similarity=0.269 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhH
Q 004848 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF 599 (727)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 599 (727)
...++..+..+|-.++|++. ..+. ...-.+..+.|+++.|..+..++-.
T Consensus 617 rt~va~Fle~~g~~e~AL~~-------s~D~-----------d~rFelal~lgrl~iA~~la~e~~s------------- 665 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALEL-------STDP-----------DQRFELALKLGRLDIAFDLAVEANS------------- 665 (794)
T ss_pred hhhHHhHhhhccchHhhhhc-------CCCh-----------hhhhhhhhhcCcHHHHHHHHHhhcc-------------
Confidence 44566677777766665543 3222 0122344667788877776655432
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848 600 GVALNQMGLACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (727)
..-|..||.+....+++..|.++|.++...
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 245777888888888888888888888664
No 443
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.04 E-value=1.2e+02 Score=29.52 Aligned_cols=171 Identities=13% Similarity=-0.024 Sum_probs=104.2
Q ss_pred HcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 004848 277 SLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAML-GQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY 355 (727)
Q Consensus 277 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 355 (727)
+...-..|+.+.+.++.+.+. ...+|...-.++..+ .+..+-+.++...++- .|..-.+|..
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpA---------nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~--------npKNYQvWHH 117 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPA---------NYTVWQYRRVILRHLMSDLNKELEYLDEIIED--------NPKNYQVWHH 117 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcc---------cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--------CccchhHHHH
Confidence 334456677777777777521 122333333333333 3456667777776665 6778888888
Q ss_pred HHHHHHHhcCHH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 004848 356 LAEAHVQALQFS-EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASV 434 (727)
Q Consensus 356 la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 434 (727)
.-.+....|++. .-+++...++....++. .+|...-.+....+.++.-+.+..+.+..-..+ -.+
T Consensus 118 Rr~ive~l~d~s~rELef~~~~l~~DaKNY--------HaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N------NSA 183 (318)
T KOG0530|consen 118 RRVIVELLGDPSFRELEFTKLMLDDDAKNY--------HAWSHRQWVLRFFKDYEDELAYADELLEEDIRN------NSA 183 (318)
T ss_pred HHHHHHHhcCcccchHHHHHHHHhccccch--------hhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc------cch
Confidence 888888888887 77888888888665554 346667777777888998888887766432111 112
Q ss_pred HHHHHHHHHH-cCC-----HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004848 435 DCSIGDTYLS-LSR-----YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR 486 (727)
Q Consensus 435 ~~~la~~~~~-~g~-----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 486 (727)
|+..-.+... .|- .+.-+.+..+.+.+ .|....+|..|..++..
T Consensus 184 WN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~--------vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 184 WNQRYFVITNTKGVISKAELERELNYTKDKILL--------VPNNESAWNYLKGLLEL 233 (318)
T ss_pred hheeeEEEEeccCCccHHHHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHh
Confidence 2221111111 121 22334444555554 68888899999888886
No 444
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=69.02 E-value=29 Score=33.03 Aligned_cols=110 Identities=13% Similarity=0.068 Sum_probs=65.0
Q ss_pred HHHHcCChhHHHHHHHHhcccchhccC---ccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHH
Q 004848 274 IYCSLGQYNEAIPVLEQSIEIPVIEEG---QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG 350 (727)
Q Consensus 274 ~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 350 (727)
..+..|+|+.|+.+..-|++.....+. .+.+...+.-....+......|..-+. .++.....+. ....-.+.-.+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~-~~~dmpd~vrA 169 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLT-TEWDMPDEVRA 169 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHH-hcCCCChHHHH
Confidence 356789999999999999987533322 222333333344555555666653221 1222222232 11111123345
Q ss_pred HHHHHHHHHHH---------HhcCHHHHHHHHHHHHHHHHhcCC
Q 004848 351 ETCRYLAEAHV---------QALQFSEAQKFCQMALDIHKDNGS 385 (727)
Q Consensus 351 ~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~~~~ 385 (727)
..|...|..+. ..++...|+.++++|+.++++.+-
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 56666777663 456788999999999999987764
No 445
>PF13041 PPR_2: PPR repeat family
Probab=68.39 E-value=19 Score=24.47 Aligned_cols=29 Identities=17% Similarity=0.385 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
.+|..+-..|.+.|++++|.++|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 37888999999999999999999998864
No 446
>PF13041 PPR_2: PPR repeat family
Probab=66.87 E-value=22 Score=24.20 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (727)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (727)
..|..+-..|.+.|++++|.++|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 46777888899999999999999988764
No 447
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=66.84 E-value=1.4e+02 Score=29.73 Aligned_cols=178 Identities=13% Similarity=0.043 Sum_probs=98.2
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 004848 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS-GLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (727)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (727)
.|+...+++..|...+..|+|..|-.++-....+... ..+.... .|..+| .-.-+.+|+.|++-+.+..+...
T Consensus 125 ~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~-----~d~n~lsalwGKlA-SEIL~qnWd~A~edL~rLre~ID 198 (432)
T KOG2758|consen 125 TPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSD-----PDRNYLSALWGKLA-SEILTQNWDGALEDLTRLREYID 198 (432)
T ss_pred CHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCC-----cchhhHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHc
Confidence 6888999999999999999999999988776666432 2332333 343333 34556789999999988877765
Q ss_pred hCCCCCccHHHHHHHHHH-------HHHH-cCCHHHHHHHH------HHHHHHHHHhCCCCchhHHHHHHHHHHHHHHh-
Q 004848 549 DAPGQQSTVAGIEAQMGV-------MYYM-LGNYSDSYDSF------KNAISKLRAIGERKSAFFGVALNQMGLACVQR- 613 (727)
Q Consensus 549 ~~~~~~~~~~~~~~~la~-------~~~~-~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~- 613 (727)
...-... +..+....+ +++. -+--+.-++.| -.|++. ..+..+..|+.+..-.
T Consensus 199 s~~f~~~--~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt----------~cPhllRYLatAvvtnk 266 (432)
T KOG2758|consen 199 SKSFSTS--AQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQT----------SCPHLLRYLATAVVTNK 266 (432)
T ss_pred ccccccH--HHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHh----------hCHHHHHHHHHHhhcch
Confidence 4321111 111111111 1111 11112222222 122221 1234555555554433
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848 614 YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (727)
Q Consensus 614 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (727)
.+...+++-+-+.++.-.- .-.+|- ...-.|++-.-+++.|...++++-+..
T Consensus 267 ~~rr~~lkdlvkVIqqE~y--sYkDPi-----teFl~clyvn~DFdgAq~kl~eCeeVl 318 (432)
T KOG2758|consen 267 RRRRNRLKDLVKVIQQESY--SYKDPI-----TEFLECLYVNYDFDGAQKKLRECEEVL 318 (432)
T ss_pred HhhHHHHHHHHHHHHHhcc--ccCCcH-----HHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 4556666666666554211 111332 223345555668999999998887654
No 448
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=66.58 E-value=64 Score=28.68 Aligned_cols=113 Identities=13% Similarity=0.002 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcC----CC--------------------------CCHHHHHHHHHHH
Q 004848 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGAN----GK--------------------------PSLELVMCLHVIA 272 (727)
Q Consensus 223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~----~~--------------------------~~~~~~~~~~~la 272 (727)
.....|+.....|+ .++|+....+|...+..... .. ............+
T Consensus 4 ~~i~~Ar~aL~~g~-~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a 82 (155)
T PF10938_consen 4 RDIQKARLALFQGD-TDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTA 82 (155)
T ss_dssp HHHHHHHHHHCTT--HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHH
Confidence 34677888899997 99999999999887753210 00 0123345566678
Q ss_pred HHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (727)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 337 (727)
.-.+..|+...|++.++-+-.-. ......-|......-...+..+...|++.+|...+..++.-
T Consensus 83 ~~~l~~g~~~~A~~~L~~~~~ei-~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~~ 146 (155)
T PF10938_consen 83 NELLKKGDKQAAREILKLAGSEI-DITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALDG 146 (155)
T ss_dssp HHHHHTT-HHHHHHHHHHTT-EE-EEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhCCCHHHHHHHHHHhcccc-eeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 88999999999999998764321 11112334445556778899999999999999999988753
No 449
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=66.22 E-value=53 Score=25.06 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848 601 VALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (727)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (727)
..+...|.-+-..|+|++|+.+|..+++.+..
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 34444566667789999999999999998766
No 450
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=66.15 E-value=52 Score=25.16 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC-CCChhHHHH
Q 004848 645 YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG-TANPDVDDE 686 (727)
Q Consensus 645 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g-~~~p~~~~~ 686 (727)
+...|.-+...|++++|+.+|.++++.+...+. ..++.....
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~ 51 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKN 51 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH
Confidence 344555667789999999999999998877653 333443333
No 451
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=65.44 E-value=18 Score=22.91 Aligned_cols=29 Identities=28% Similarity=0.193 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHH--HHHHH
Q 004848 351 ETCRYLAEAHVQALQFSEAQKFCQ--MALDI 379 (727)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~--~al~~ 379 (727)
+.++.+|..+...|++++|+..++ -+..+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 456788999999999999999954 55443
No 452
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=65.32 E-value=1.8e+02 Score=30.28 Aligned_cols=109 Identities=15% Similarity=0.067 Sum_probs=62.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHH--HHHHHhCCHHHHHHHHHHHH-------------
Q 004848 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG--LACVQRYSINEAVELFEEAR------------- 627 (727)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al------------- 627 (727)
..+..++..++|..|...|.+++... .... .......+..+. ..++..-++++|.+++++.+
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~--l~~~-~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~ 211 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRL--LSAV-NHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHD 211 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcc--cChh-hhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhh
Confidence 45667788999999999999988652 1111 111223444444 44556778999999998211
Q ss_pred ------HHHHHhcC------------CCCccHHHHHHHH--HHHHHHcCChHHHHHHHHHHHHHHHH
Q 004848 628 ------SILEQECG------------PYHPDTLGVYSNL--AGTYDAIGRLDDAIEILEFVVGIREE 674 (727)
Q Consensus 628 ------~~~~~~~~------------~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~ 674 (727)
.....+.+ ..+|....+...+ |.--...|+|+.|+..+-+++++..+
T Consensus 212 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~~q 278 (380)
T TIGR02710 212 ELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELIVQ 278 (380)
T ss_pred HHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 00000000 0111111111122 22334789999999999999887654
No 453
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=64.73 E-value=46 Score=28.29 Aligned_cols=82 Identities=15% Similarity=0.043 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHH
Q 004848 239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTY 318 (727)
Q Consensus 239 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 318 (727)
..-..+++++++.+.....-.+++.....+...+... +++..+|..+.... .|...+ ..|...|..+
T Consensus 43 s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~---IG~~~A----lfYe~~A~~l 109 (125)
T smart00777 43 SGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKG---IGTKLA----LFYEEWAQLL 109 (125)
T ss_pred hhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCC---cchhhH----HHHHHHHHHH
Confidence 3456778888888766655556677777776666543 44666776655432 233332 3377889999
Q ss_pred HHhCCHHHHHHHHHH
Q 004848 319 AMLGQLENSLMCYTT 333 (727)
Q Consensus 319 ~~~g~~~~A~~~~~~ 333 (727)
...|++.+|.+.|+.
T Consensus 110 E~~g~~~~A~~iy~~ 124 (125)
T smart00777 110 EAAGRYKKADEVYQL 124 (125)
T ss_pred HHcCCHHHHHHHHHc
Confidence 999999999999874
No 454
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.15 E-value=1.7e+02 Score=29.56 Aligned_cols=28 Identities=7% Similarity=0.038 Sum_probs=19.3
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 004848 521 TDVSSIYESMNELEQAIKLLQKALKIYN 548 (727)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (727)
..-|.+++..++|.+....+..+-..++
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~K 89 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFK 89 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHh
Confidence 4557788888888887777766555443
No 455
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=63.95 E-value=82 Score=31.12 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH
Q 004848 536 AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ 612 (727)
Q Consensus 536 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 612 (727)
|+.+|.+|+.+.|.. ...++.+|.++...|+.-.|+-+|-+++-. ..+ ...+..+|..++.+
T Consensus 1 A~~~Y~~A~~l~P~~-------G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~P-f~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN-------GNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIP-FPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTB-------SHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC-------CCcccchhhhhccccchHHHHHHHHHHHhc-------CCC-cHHHHHHHHHHHHH
Confidence 688999999999988 378999999999999999999999988853 122 25667777777666
No 456
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=63.35 E-value=12 Score=22.02 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004848 602 ALNQMGLACVQRYSINEAVELFEEARS 628 (727)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (727)
+|+.+-..|.+.|++++|.+.|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467788899999999999999998765
No 457
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=62.96 E-value=93 Score=32.72 Aligned_cols=120 Identities=10% Similarity=-0.026 Sum_probs=69.5
Q ss_pred HhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004848 320 MLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMG 399 (727)
Q Consensus 320 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~ 399 (727)
..|+.-.|-.....++.. .|..+......+.+....|+|+.|...+..+-.+..... .+...+-
T Consensus 301 ~~gd~~aas~~~~~~lr~--------~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~--------~~~~~~~ 364 (831)
T PRK15180 301 ADGDIIAASQQLFAALRN--------QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD--------STLRCRL 364 (831)
T ss_pred hccCHHHHHHHHHHHHHh--------CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc--------hHHHHHH
Confidence 346666666555555555 244444455567788888999988888766554433221 2355566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848 400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (727)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (727)
.....+|+++.|.....-.+ ++......+...-+.....+|-++++..++++.+.+
T Consensus 365 r~~~~l~r~~~a~s~a~~~l------~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 365 RSLHGLARWREALSTAEMML------SNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HhhhchhhHHHHHHHHHHHh------ccccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 66777888888877654332 111111222222333444566677777777777665
No 458
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=61.88 E-value=64 Score=27.44 Aligned_cols=80 Identities=13% Similarity=0.094 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC
Q 004848 493 SKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG 572 (727)
Q Consensus 493 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 572 (727)
=..+++++++.+...-.-.+++....+|...+... ++ +.++|.-.... +.-...+..|...|..+...|
T Consensus 45 L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---~d---p~~if~~L~~~-----~IG~~~AlfYe~~A~~lE~~g 113 (125)
T smart00777 45 LLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---DE---PRELFQFLYSK-----GIGTKLALFYEEWAQLLEAAG 113 (125)
T ss_pred HHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---CC---HHHHHHHHHHC-----CcchhhHHHHHHHHHHHHHcC
Confidence 34556666666544322345666777777777653 33 44455443322 333455777888999999999
Q ss_pred CHHHHHHHHHH
Q 004848 573 NYSDSYDSFKN 583 (727)
Q Consensus 573 ~~~~A~~~~~~ 583 (727)
++.+|...|+.
T Consensus 114 ~~~~A~~iy~~ 124 (125)
T smart00777 114 RYKKADEVYQL 124 (125)
T ss_pred CHHHHHHHHHc
Confidence 99999998864
No 459
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=61.72 E-value=14 Score=37.10 Aligned_cols=123 Identities=11% Similarity=0.085 Sum_probs=85.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC-----------CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004848 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGER-----------KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631 (727)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 631 (727)
..+...++.+++..|..-|.+++......... ....-...+.+++.+-+..+.+..|+..-..++..
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~-- 304 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD-- 304 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc--
Confidence 34666788888999888888888765421110 01111234566778888888888888777766663
Q ss_pred HhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChh
Q 004848 632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVR 701 (727)
Q Consensus 632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~ 701 (727)
.+....+++..+..+....++++|++.++.+... .|........+..+-....++.
T Consensus 305 ------~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~--------~p~d~~i~~~~~~~~~~~~~~~ 360 (372)
T KOG0546|consen 305 ------ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK--------APNDKAIEEELENVRQKKKQYN 360 (372)
T ss_pred ------ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc--------CcchHHHHHHHHHhhhHHHHHH
Confidence 6777779999999999999999999999999865 4666666555555544444433
No 460
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=60.81 E-value=65 Score=35.84 Aligned_cols=181 Identities=13% Similarity=0.052 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHHhc
Q 004848 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR---TGKLRESKSYCENALRIYEK 506 (727)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~ 506 (727)
..+.+-.++-..|....+|+.-+++.+..-.+-.... ......+.+..+.++.+ -|+-++|+...-.+++.-..
T Consensus 199 L~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~---vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~ 275 (1226)
T KOG4279|consen 199 LHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLK---VVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGP 275 (1226)
T ss_pred cCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhh---hhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCC
Confidence 3455566777788888999888777665544310000 00111122223333333 46677777766666664222
Q ss_pred CCCCCChHhHHHHHHHHHHHHHh---------cccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCC-HHH
Q 004848 507 PVPGVPPEEIASGLTDVSSIYES---------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN-YSD 576 (727)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~ 576 (727)
.. ...+...|++|.. .+..+.|+++|++|.+..+... .-.+++.++...|+ |+.
T Consensus 276 -----va---pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~--------sGIN~atLL~aaG~~Fen 339 (1226)
T KOG4279|consen 276 -----VA---PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY--------SGINLATLLRAAGEHFEN 339 (1226)
T ss_pred -----CC---CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh--------ccccHHHHHHHhhhhccc
Confidence 22 2345556666543 4567789999999988765431 22355666666553 344
Q ss_pred HHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHH
Q 004848 577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLA---CVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 577 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~---~~~~g~~~~A~~~~~~al~~ 629 (727)
..++-.-.+.+-.-++.+.......-|...|.. -...+++.+|+...+...++
T Consensus 340 s~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 340 SLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred hHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhcc
Confidence 444333333332222222211112222222221 12345777777766666655
No 461
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=60.62 E-value=1.2e+02 Score=26.87 Aligned_cols=132 Identities=12% Similarity=0.039 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004848 572 GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651 (727)
Q Consensus 572 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 651 (727)
++-+-|...++..+.... ......+...+-..-...|.|.+|..++.+.++.- +..+...+|..+++|
T Consensus 71 ~N~eLa~~tLEnLvt~sn------TKikEiA~leqva~kis~~~~~eaK~LlnkIi~nk------~YSeistsYaRi~wc 138 (220)
T PF10858_consen 71 NNSELAFNTLENLVTNSN------TKIKEIAALEQVAIKISEKKYSEAKQLLNKIIENK------EYSEISTSYARINWC 138 (220)
T ss_pred CcHHHHHHHHHHHHHccc------hHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhh------hHHHHHHHHHHHHHH
Confidence 555666666666444211 11122344444455567789999999999988761 245677789999998
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 004848 652 YDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (727)
Q Consensus 652 ~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (727)
.....+-.--+.--++..+...-...+..|..+.+-...+..-.+.|+..+|. +.++.++..+-
T Consensus 139 ~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI~kaiwdik~nm~~~ae-knL~~l~~Snn 202 (220)
T PF10858_consen 139 CMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATIIKAIWDIKNNMKNQAE-KNLKNLLASNN 202 (220)
T ss_pred HheecccccChhhHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHhhcc
Confidence 88766544333344444444444455677877777777788888899999999 99998887653
No 462
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=60.60 E-value=14 Score=21.70 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004848 310 GHMQLGDTYAMLGQLENSLMCYTTGLE 336 (727)
Q Consensus 310 ~~~~la~~~~~~g~~~~A~~~~~~al~ 336 (727)
+|..+-..|.+.|++++|...|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 367788999999999999999998764
No 463
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=60.55 E-value=5.9e+02 Score=34.76 Aligned_cols=105 Identities=9% Similarity=0.071 Sum_probs=57.7
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHH---HHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM---GLACVQRYSINEAVELFEEARSILEQ 632 (727)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~~~~~ 632 (727)
..+.+.+..|.+..+.|-++-++..+.+...+ .......+...+ +.+|.... ..+..+++....
T Consensus 2734 e~A~~in~fakvArkh~l~~vcl~~L~~iytl-------p~veiqdaF~K~req~~c~l~~~------~e~~~gLevi~s 2800 (3550)
T KOG0889|consen 2734 ELAWAINRFAKVARKHGLPDVCLNQLAKIYTL-------PNVEIQDAFQKLREQAKCYLQNK------NELKTGLEVIES 2800 (3550)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc-------CcchHHHHHHHHHHHHHHHhcCh------HHHHHHHHHHhc
Confidence 34555556666666666666666655554443 111122222222 23333222 222233333222
Q ss_pred hcCC--CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004848 633 ECGP--YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (727)
Q Consensus 633 ~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (727)
..-. .....+..+..-|....+.|+.++|-..|..|+++..
T Consensus 2801 TNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~ 2843 (3550)
T KOG0889|consen 2801 TNLMYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDD 2843 (3550)
T ss_pred ccHHHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHh
Confidence 1100 1234556777889999999999999999999999864
No 464
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.38 E-value=2.6e+02 Score=30.52 Aligned_cols=160 Identities=15% Similarity=0.048 Sum_probs=98.7
Q ss_pred cccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC---------------CCHHHHHHHHHHHHHH
Q 004848 211 SEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGK---------------PSLELVMCLHVIAAIY 275 (727)
Q Consensus 211 ~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~---------------~~~~~~~~~~~la~~~ 275 (727)
..+...+|-....++.++..+...|+ .+-|.++.+++|=.+....... .+.....+++..-..+
T Consensus 274 ~~lL~ssPYHvdsLLqva~~~r~qgD-~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l 352 (665)
T KOG2422|consen 274 LILLISSPYHVDSLLQVADIFRFQGD-REMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSL 352 (665)
T ss_pred eeeeccCCcchhHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHH
Confidence 34556679999999999999999998 8999999999998887752211 0123334445555566
Q ss_pred HHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 004848 276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY 355 (727)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 355 (727)
.+.|-+..|.+++.-.+.+.+ ..+|.. +.+.+-....+..+|.--+.+++..-....-. .-|+.+ .-..
T Consensus 353 ~~RGC~rTA~E~cKlllsLdp----~eDPl~---~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~---~~PN~~-yS~A 421 (665)
T KOG2422|consen 353 AQRGCWRTALEWCKLLLSLDP----SEDPLG---ILYLIDIYALRAREYQWIIELSNEPENMNKLS---QLPNFG-YSLA 421 (665)
T ss_pred HhcCChHHHHHHHHHHhhcCC----cCCchh---HHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh---hcCCch-HHHH
Confidence 788999999999999998862 224432 12222233334445554444444432211000 013332 2234
Q ss_pred HHHHHHHhcC---HHHHHHHHHHHHHHHHh
Q 004848 356 LAEAHVQALQ---FSEAQKFCQMALDIHKD 382 (727)
Q Consensus 356 la~~~~~~g~---~~~A~~~~~~al~~~~~ 382 (727)
+|..|..... -..|...+.+|+..+|.
T Consensus 422 lA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 422 LARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 5555555554 56788888888888763
No 465
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=59.16 E-value=20 Score=21.58 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004848 602 ALNQMGLACVQRYSINEAVELFEEARS 628 (727)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (727)
+|+.+-..|.+.|++++|.++|.+...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466778889999999999999998765
No 466
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=58.95 E-value=2.6e+02 Score=30.06 Aligned_cols=203 Identities=12% Similarity=0.018 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC
Q 004848 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345 (727)
Q Consensus 266 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 345 (727)
.++..+-.++...-++.-...++.+.+... .. -.+++.++.+|... ..++-...+++.++.
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-----e~-----kmal~el~q~y~en-~n~~l~~lWer~ve~-------- 127 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-----ES-----KMALLELLQCYKEN-GNEQLYSLWERLVEY-------- 127 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc-----ch-----HHHHHHHHHHHHhc-CchhhHHHHHHHHHh--------
Confidence 345555555655556666677777777763 11 12378889998887 456667778877777
Q ss_pred CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 004848 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN 425 (727)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 425 (727)
+-+....-..|+..|.. ++-..+..+|.+++...-..... ...-..|..+-. .--.+.+.-+....+. ....
T Consensus 128 dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~--~~i~evWeKL~~--~i~dD~D~fl~l~~ki---qt~l 199 (711)
T COG1747 128 DFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQN--AAIKEVWEKLPE--LIGDDKDFFLRLQKKI---QTKL 199 (711)
T ss_pred cchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhh--hhHHHHHHHHHH--hccccHHHHHHHHHHH---HHhh
Confidence 44455566677776665 88899999999988754221100 000111211111 1112333333332222 1222
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH--------------------HHHHHHH
Q 004848 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFV--------------------RLADMYN 485 (727)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~--------------------~la~~~~ 485 (727)
+... ...++..+-.-|....++++|++.+...++. +.....+.- ....+-.
T Consensus 200 g~~~-~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~--------d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~ 270 (711)
T COG1747 200 GEGR-GSVLMQDVYKKYSENENWTEAIRILKHILEH--------DEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQ 270 (711)
T ss_pred ccch-HHHHHHHHHHHhccccCHHHHHHHHHHHhhh--------cchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhh
Confidence 2111 1122333335566778899999888866655 222222222 2333333
Q ss_pred HcCChHHHHHHHHHHHHHH
Q 004848 486 RTGKLRESKSYCENALRIY 504 (727)
Q Consensus 486 ~~g~~~~A~~~~~~al~~~ 504 (727)
.-.++-+|+.-|++.+...
T Consensus 271 ~~rnf~~~l~dFek~m~f~ 289 (711)
T COG1747 271 SGRNFFEALNDFEKLMHFD 289 (711)
T ss_pred ccccHHHHHHHHHHHheec
Confidence 3556777777777766543
No 467
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=58.88 E-value=1.8e+02 Score=28.26 Aligned_cols=118 Identities=11% Similarity=-0.024 Sum_probs=84.0
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 004848 364 LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK-GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY 442 (727)
Q Consensus 364 g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 442 (727)
..-..|+.+...++.+.|.+.. +|...-.+...+ .+..+-++++...+ .+.|....+|...-.+.
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYT--------VW~yRr~iL~~l~~dL~~El~~l~eI~------e~npKNYQvWHHRr~iv 122 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYT--------VWQYRRVILRHLMSDLNKELEYLDEII------EDNPKNYQVWHHRRVIV 122 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccch--------HHHHHHHHHHHhHHHHHHHHHHHHHHH------HhCccchhHHHHHHHHH
Confidence 3446677788888888776642 233333333333 34566666766554 35677778888888888
Q ss_pred HHcCCHH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 443 LSLSRYD-EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (727)
Q Consensus 443 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (727)
...|++. .-+++...++.. +...-.+|...-.+....+.++.-+.+..+.++.
T Consensus 123 e~l~d~s~rELef~~~~l~~--------DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~ 176 (318)
T KOG0530|consen 123 ELLGDPSFRELEFTKLMLDD--------DAKNYHAWSHRQWVLRFFKDYEDELAYADELLEE 176 (318)
T ss_pred HHhcCcccchHHHHHHHHhc--------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8889887 667777777775 5666788888888888889999999999888876
No 468
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=58.69 E-value=3.9e+02 Score=32.05 Aligned_cols=63 Identities=10% Similarity=0.111 Sum_probs=28.1
Q ss_pred HHHHHHhcccHHHHHHHHHHHH------HHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004848 523 VSSIYESMNELEQAIKLLQKAL------KIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585 (727)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 585 (727)
-|..|...|+.++|++.|+.+. .+..........+...-..|+.-+..++++-+|.....+.+
T Consensus 958 Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 3455566666666666655432 22222211111222222344444555555555555444443
No 469
>PRK09169 hypothetical protein; Validated
Probab=58.61 E-value=5.3e+02 Score=33.60 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHH
Q 004848 473 VASVFVRLADMYNRTGKLRESKSYCE 498 (727)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~ 498 (727)
...-+.+..+.+.+..+.+.+.....
T Consensus 623 n~Q~lAN~LnALSKWP~~~~cr~Aa~ 648 (2316)
T PRK09169 623 NAQDLANLLNGLSKWPDEDDCRQAAE 648 (2316)
T ss_pred CHHHHHHHHHHHhcCCCchhHHHHHH
Confidence 33444455555555665555444333
No 470
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=57.21 E-value=1.2e+02 Score=35.84 Aligned_cols=125 Identities=24% Similarity=0.173 Sum_probs=0.0
Q ss_pred CCCCCcccccCCCCCCCCCC-CCCCCC-CCCCCCCccccHHHHHHhhhhhccCCCCCCCCCCCCCCcccchhhhhhhhhc
Q 004848 20 GNSTPVKENSVSNKSPKSTP-CPQSPR-DQPDGEGVDTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVG 97 (727)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (727)
++.+|...+-..+=||.||+ ||+||. ++.++.--+++| -|---|..=||.++|
T Consensus 1474 sptspsysptspsysptspsysptspsysptspsysptsp------sysptspsysptsps------------------- 1528 (1605)
T KOG0260|consen 1474 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP------SYSPTSPSYSPTSPS------------------- 1528 (1605)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCC-------------------
Q ss_pred ccchhhhhhhhhhccCCCCCCCCccc---ccCCCCCCCcccccchhccc-cCCccccCCCCcccccCCCCcccccccCCC
Q 004848 98 GEMREVEIMEEEEVEKPEDDSHSISS---SKKGSSSGSKKSGKLEKSQS-AGTKSISSGHSKKVSHSGMDSEVSSKTNSK 173 (727)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (727)
=.+-.++.|..| |+.+.+-..-.-+....+.+ ..++++=+..|.+.+.+..=|..+++-+|.
T Consensus 1529 --------------ysptspsysptspsysptspsysptspsysptsp~ysptspsysptspsys~~~~ysp~sp~yspt 1594 (1605)
T KOG0260|consen 1529 --------------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSTSPSYSPTSPSYSPT 1594 (1605)
T ss_pred --------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCC
Q 004848 174 GKSLPEKPPI 183 (727)
Q Consensus 174 ~~~~~~~~~~ 183 (727)
+.+.....+.
T Consensus 1595 sp~ysp~sps 1604 (1605)
T KOG0260|consen 1595 SPSYSPTSPS 1604 (1605)
T ss_pred CCCCCCCCCC
No 471
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=57.03 E-value=63 Score=24.85 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004848 604 NQMGLACVQRYSINEAVELFEEARSILEQECG 635 (727)
Q Consensus 604 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (727)
...|..+-..|+.++|+.+|++++..+.+...
T Consensus 12 I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 12 ISKALRADEWGDKEQALAHYRKGLRELEEGIA 43 (79)
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 33444455668999999999999998877655
No 472
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=56.48 E-value=1.1e+02 Score=26.27 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=34.6
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848 610 CVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (727)
Q Consensus 610 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (727)
...+|+-++-.+.+....+- ....+..+..+|.+|.+.|+..+|-+++.+|-+
T Consensus 96 lv~~~kkDqLdki~~~l~kn--------~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 96 LVKQGKKDQLDKIYNELKKN--------EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHTT-HHHHHHHHHHH-------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHhhc--------cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34556655555555554432 234456889999999999999999999999875
No 473
>PRK12798 chemotaxis protein; Reviewed
Probab=56.24 E-value=2.6e+02 Score=29.27 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAF 462 (727)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 462 (727)
...+|..++..-...|+.+-|...-.+++.+.
T Consensus 256 q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 256 QRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 34455555555555555555555555555554
No 474
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=55.78 E-value=25 Score=21.13 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848 311 HMQLGDTYAMLGQLENSLMCYTTGLEV 337 (727)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~ 337 (727)
|..+-..|.+.|++++|..+|.+..+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 667888999999999999999987653
No 475
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.71 E-value=2.4e+02 Score=28.78 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHhcCC
Q 004848 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD-IHKDNGS 385 (727)
Q Consensus 307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~ 385 (727)
.+..+..++......+.....+....+|+...... ......++..+-.+....++|.-+..++.--+. +...+..
T Consensus 101 f~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~----~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h 176 (422)
T KOG2582|consen 101 FFPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPS----NGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPH 176 (422)
T ss_pred HHHHHHHHHHHHHhcCCccccchHHHHHHHHhccC----ccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCC
Confidence 34456677888888888888888888888765432 113444555666666777777766665543322 2222221
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004848 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLAS 419 (727)
Q Consensus 386 ~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al 419 (727)
.+.......++.-|.+|....+++.|+.+|..++
T Consensus 177 ~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v 210 (422)
T KOG2582|consen 177 LDPKYFLLYLYYGGMICIGLKRFERALYLLEICV 210 (422)
T ss_pred CCHHHHHHHHHhcceeeeccccHHHHHHHHHHHH
Confidence 1222223334555778889999999999998876
No 476
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=55.45 E-value=74 Score=24.19 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 004848 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEI 254 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~ 254 (727)
.+..+...|...-..|+ |++|+.+|.+|++.|-.
T Consensus 5 kai~Lv~~A~~eD~~gn-y~eA~~lY~~ale~~~~ 38 (75)
T cd02680 5 RAHFLVTQAFDEDEKGN-AEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHhhHhhh-HHHHHHHHHHHHHHHHH
Confidence 34566777777777885 99999999999999876
No 477
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=55.19 E-value=90 Score=23.63 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC-CCChhHHHH
Q 004848 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLG-TANPDVDDE 686 (727)
Q Consensus 646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g-~~~p~~~~~ 686 (727)
...|.-....|++++|+.+|.++++.+..... ..+|.....
T Consensus 10 ~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~ 51 (75)
T cd02678 10 VKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKES 51 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH
Confidence 33444556789999999999999998876553 334443333
No 478
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=54.49 E-value=30 Score=36.08 Aligned_cols=135 Identities=18% Similarity=0.204 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHc-CChhHHHHHHHHhcccchh---ccCccchHHHHHHHHHHHHHHHHhCCHHHHH--------HHH
Q 004848 264 LVMCLHVIAAIYCSL-GQYNEAIPVLEQSIEIPVI---EEGQEHALAKFAGHMQLGDTYAMLGQLENSL--------MCY 331 (727)
Q Consensus 264 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~--------~~~ 331 (727)
...++..+|..|... .+.-.|..++.++++.... .....++.. -.++.-|...-+..+-+ .+-
T Consensus 244 riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~-----p~~ay~~~re~~~~~elE~lv~D~d~~R 318 (615)
T KOG0508|consen 244 RIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLE-----PVLAYGYGREVNNREELEELVEDPDEMR 318 (615)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCC-----chhhhhhhhhcCCHHHHHHHhcChHHHH
Confidence 456677777777543 3466777788777765422 000011100 01111111111111111 223
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 004848 332 TTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE 403 (727)
Q Consensus 332 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~ 403 (727)
-+++-+...+++..+|+........|-+|...|+++..++++.-|+.+..++..+-.+..+..+...+.++.
T Consensus 319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS 390 (615)
T KOG0508|consen 319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS 390 (615)
T ss_pred HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence 356667788899999998888888899999999999999999999999999888877777777776666554
No 479
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=54.19 E-value=16 Score=35.37 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh-cCCC
Q 004848 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR-VNND 721 (727)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~-~~~~ 721 (727)
...++=..+...++++.|..+.++.+.+ +|+.+..+..-|.+|..+|-+.-|+ ..++..++..|+ ...+
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l--------~P~dp~eirDrGliY~ql~c~~vAl-~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDL--------NPEDPYEIRDRGLIYAQLGCYHVAL-EDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhh--------CCCChhhccCcHHHHHhcCCchhhH-HHHHHHHHhCCCchHHH
Confidence 4556667788899999999999999976 5777777888899999999999999 999999999887 4433
No 480
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=53.77 E-value=33 Score=20.57 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004848 602 ALNQMGLACVQRYSINEAVELFEEARS 628 (727)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (727)
+|..+..++.+.|+++.|..+|....+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 577788899999999999999998765
No 481
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.53 E-value=2.3e+02 Score=27.85 Aligned_cols=134 Identities=14% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 004848 569 YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648 (727)
Q Consensus 569 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 648 (727)
...|++=+|...++..+...-... ...........-+.++.+.++..-|..+.-..++..+. ....+...-.-++
T Consensus 17 ~~~~d~Yeahqm~RTl~fR~~~~K--~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~ek---a~~ad~~~~~anl 91 (312)
T KOG3024|consen 17 IELGDYYEAHQMYRTLVFRYTRQK--AHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEK---AEVADSLLKVANL 91 (312)
T ss_pred cccccHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHH---HHhhHhHHHHHHH
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHH
Q 004848 649 AGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL 708 (727)
Q Consensus 649 a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l 708 (727)
+.+....+.-+..+..+-+..--+...+|...-..+..+..||..+..-+++.+|. .+|
T Consensus 92 ~~ll~e~~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~-~HF 150 (312)
T KOG3024|consen 92 AELLGEADPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEAR-RHF 150 (312)
T ss_pred HHHHhhcCCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHH-hHh
No 482
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=53.49 E-value=21 Score=35.89 Aligned_cols=99 Identities=15% Similarity=0.044 Sum_probs=72.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCC-------------CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848 397 LMGLICETKGDHEAALEHLVLASMTMIAND-------------QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463 (727)
Q Consensus 397 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 463 (727)
..+.-.+..+++..|..-|.+++....... ........+.+++.+-...+.+..|+.....++..
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~-- 304 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD-- 304 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc--
Confidence 345556677788888877777765544110 11222344566778888888888888877777663
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (727)
Q Consensus 464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (727)
.+....+++..+..+....++++|+..++.+...
T Consensus 305 ------~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~ 338 (372)
T KOG0546|consen 305 ------ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK 338 (372)
T ss_pred ------ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc
Confidence 6778889999999999999999999999998777
No 483
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=53.28 E-value=91 Score=23.63 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=22.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHhcCC
Q 004848 480 LADMYNRTGKLRESKSYCENALRIYEKPV 508 (727)
Q Consensus 480 la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (727)
.|.-+-..|++++|+.+|..+++.+....
T Consensus 14 ~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 14 KALKADEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 34445558999999999999999876543
No 484
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=52.38 E-value=2.4e+02 Score=27.74 Aligned_cols=140 Identities=12% Similarity=0.037 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCc-----hHHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004848 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP-----RVGETCRYL-AEAHVQALQFSEAQKFCQMALDIHKDN 383 (727)
Q Consensus 310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~ 383 (727)
.+-.-++.+.-..+|..|+...+++++..........+ ..-..+..+ ..++...+++.+++.+..+....-++.
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl 116 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC
Confidence 35556677777889999999999999886321111111 111122222 346678899999988876665544433
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004848 384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456 (727)
Q Consensus 384 ~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 456 (727)
. +.++..-..+|.+.+++...++.-..-+..-...........+-..+-.++.=+|.+.+|.++..
T Consensus 117 P-------pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 117 P-------PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred C-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 3 34566667788899999888877654443111111111112223334455666899999998763
No 485
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=50.80 E-value=39 Score=20.25 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848 644 VYSNLAGTYDAIGRLDDAIEILEFVVG 670 (727)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (727)
+|..+..++.+.|+++.|..+|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 577888999999999999999988764
No 486
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=50.69 E-value=34 Score=30.41 Aligned_cols=109 Identities=14% Similarity=0.011 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhC------CC------------------------C--CccHHHHHHHHHHH
Q 004848 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDA------PG------------------------Q--QSTVAGIEAQMGVM 567 (727)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~------------------------~--~~~~~~~~~~la~~ 567 (727)
....+......|+.++|...+.++....... +. . ...........+.-
T Consensus 5 ~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~ 84 (155)
T PF10938_consen 5 DIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANE 84 (155)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHH
Confidence 3456778888999999999999887765421 00 0 01123344566778
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004848 568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (727)
Q Consensus 568 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (727)
..+.|+...|...++.+-.-..-....-|-.........+..+...|++.+|...+..++.
T Consensus 85 ~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 85 LLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8899999999887765432100000000111223445667888999999999999999875
No 487
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.61 E-value=3.4e+02 Score=31.77 Aligned_cols=182 Identities=16% Similarity=0.087 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHhcCCC--
Q 004848 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF--SEAQKFCQMALDIHKDNGSP-- 386 (727)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~-- 386 (727)
+..|+..|...|++++|++.+.+...-.. ..+......+-.+-..+...+.- +-..++..-.++..+..+-.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~----~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~If 582 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDS----DTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIF 582 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcccc----ccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeee
Confidence 56788899999999999999988776421 01233333344444444444433 44444444333333322211
Q ss_pred --CCHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH--------cCCHHHHHHH-
Q 004848 387 --ASLEEAAD-RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS--------LSRYDEAGFA- 454 (727)
Q Consensus 387 --~~~~~a~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~- 454 (727)
.....+.. -...-.-|......+-++.|++..+......+. ..+..++..|.. .++-+++.+.
T Consensus 583 t~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~-----~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~ 657 (877)
T KOG2063|consen 583 TSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTST-----LLHTVLLKLYLEKVLEQASTDGKGEEAPETT 657 (877)
T ss_pred eccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccch-----HHHHHHHHHHHHHHhhccCchhccccchhhh
Confidence 00000000 111122345556777788888877653332221 122222222221 2223344444
Q ss_pred -HHHHHHHHHHhcCCCChh-------HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848 455 -YQKALTAFKTNKGENHPA-------VASVFVRLADMYNRTGKLRESKSYCENALR 502 (727)
Q Consensus 455 -~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (727)
.++.....+ .....+|. ....|...+.++.++|+.++|+..|-..+.
T Consensus 658 ~rekl~~~l~-~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 658 VREKLLDFLE-SSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHHHHHHHhh-hhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 333333222 11111221 245666778888888888888887765544
No 488
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=50.47 E-value=91 Score=23.98 Aligned_cols=32 Identities=16% Similarity=0.133 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC
Q 004848 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (727)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (727)
+...|..+-..|+.++|+.+|++++.......
T Consensus 11 ~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ 42 (79)
T cd02679 11 EISKALRADEWGDKEQALAHYRKGLRELEEGI 42 (79)
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHc
Confidence 33444455566888899999999988877653
No 489
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.46 E-value=4.6e+02 Score=30.37 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=42.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004848 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380 (727)
Q Consensus 313 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 380 (727)
..-.+|...|+|++|+++.+..-. ..-.++...|..++..++|..|.++|-+.+.-.
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~p~-----------~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~F 419 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTRPD-----------ALETVLLKQADFLFQDKEYLRAAEIYAETLSSF 419 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCCHH-----------HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhH
Confidence 355788999999998887654311 233467888999999999999999998875544
No 490
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=48.10 E-value=1.2e+02 Score=28.46 Aligned_cols=55 Identities=16% Similarity=0.191 Sum_probs=42.5
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848 608 LACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (727)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (727)
.-+++.+...+|+...+.-++. .|........|-.+|+-.|+|++|...++-+-.
T Consensus 9 seLL~~~sL~dai~~a~~qVka--------kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKA--------KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhc--------CCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3456677888888888877776 777777788888888999999999877766543
No 491
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=47.99 E-value=3.4e+02 Score=28.25 Aligned_cols=144 Identities=12% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCh------------
Q 004848 408 HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHP------------ 471 (727)
Q Consensus 408 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~------------ 471 (727)
|-.+..++.+|...+...+.......+...++.+|.. -++.+.-+...++-+++++.....-+|
T Consensus 147 F~~~~~~l~~A~~yf~ld~~~t~hv~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y~~~~rql~f 226 (371)
T PF12309_consen 147 FLNGQKWLNKAKEYFVLDGFVTDHVQILQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNPQYYLNLCRQLWF 226 (371)
T ss_pred HHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHHHhcC--------CCCCChHhHHHHHHHH
Q 004848 472 AVASVFVRLADMYNRTGK--------------------LRESKSYCENALRIYEKP--------VPGVPPEEIASGLTDV 523 (727)
Q Consensus 472 ~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~~~~l 523 (727)
..+.++..+..+.....+ ...|+.+|+..+..+... ...+.......+++.+
T Consensus 227 Elae~~~~i~dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~ 306 (371)
T PF12309_consen 227 ELAEIYSEIMDLKLEKLDEPQNDNEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHI 306 (371)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHH
Q ss_pred HHHHHhc---------ccHHHHHHHHHHHHHHHHhCC
Q 004848 524 SSIYESM---------NELEQAIKLLQKALKIYNDAP 551 (727)
Q Consensus 524 a~~~~~~---------g~~~~A~~~~~~al~~~~~~~ 551 (727)
|.+|.+. +....++.+|+.++......+
T Consensus 307 arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~ 343 (371)
T PF12309_consen 307 ARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKHP 343 (371)
T ss_pred HHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhCh
No 492
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=46.73 E-value=3.6e+02 Score=28.10 Aligned_cols=58 Identities=16% Similarity=-0.019 Sum_probs=39.6
Q ss_pred HHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHH--HHHHHHhCCHHHHHHHHH
Q 004848 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQL--GDTYAMLGQLENSLMCYT 332 (727)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~ 332 (727)
.+..++..++|..|...|..++..... +... .....+..+ |..++..-++++|..+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~--~~~~--~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLS--AVNH--TFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccC--hhhh--hHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 455788899999999999999866311 1122 223334444 444566778899999998
No 493
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=45.66 E-value=1.3e+02 Score=22.67 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=24.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 004848 647 NLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677 (727)
Q Consensus 647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g 677 (727)
..|.-....|++++|+.+|..+++.+.....
T Consensus 11 ~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~ 41 (75)
T cd02656 11 KQAVKEDEDGNYEEALELYKEALDYLLQALK 41 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 3444556679999999999999998877664
No 494
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.12 E-value=5.5e+02 Score=29.77 Aligned_cols=59 Identities=22% Similarity=0.207 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848 396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463 (727)
Q Consensus 396 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 463 (727)
..+-.+|...|+|++|+++.... +...-.++...|..++..++|..|.++|-+.+.-++
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~---------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FE 420 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTR---------PDALETVLLKQADFLFQDKEYLRAAEIYAETLSSFE 420 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCC---------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHH
Confidence 34567889999999999876421 234456788889999999999999999887765443
No 495
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=44.82 E-value=59 Score=19.00 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004848 614 YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG 650 (727)
Q Consensus 614 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 650 (727)
|+++.|...|++++.. .|....++...+.
T Consensus 1 ~~~~~~r~i~e~~l~~--------~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEK--------FPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHH--------CCCChHHHHHHHH
Confidence 5678899999999987 5666666665554
No 496
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.33 E-value=4.2e+02 Score=27.87 Aligned_cols=102 Identities=11% Similarity=-0.029 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHH-HHHhcCCCC
Q 004848 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRY-DEAGFAYQKALTA-FKTNKGENH 470 (727)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~-~~~~~~~~~ 470 (727)
.+++.+-.+...-|+|+.|...+.+++..++..+-.|.....++.+ ..+.+-++. .-|..++...+.- .-+.+.+.+
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~ii-k~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLII-KNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHH-HHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 3577788888999999999999999999999999988887665544 445554544 3355544443322 112222334
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHH
Q 004848 471 PAVASVFVRLADMYNRTGKLRESKS 495 (727)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~ 495 (727)
|..-..+..--.++....+.+-|..
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~ 377 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQ 377 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHH
Confidence 4433333322233335555555543
No 497
>COG3899 Predicted ATPase [General function prediction only]
Probab=42.76 E-value=6.4e+02 Score=29.86 Aligned_cols=260 Identities=16% Similarity=0.040 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhcc
Q 004848 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 299 (727)
.+..++..|+.....-. +.+|+.++..++.+.....+.+...-....+......-+..+++..+..++...+..
T Consensus 438 l~~l~l~Ag~ka~~~~a-~~~A~~~~~~~~~ll~~~~~~~~~~l~l~~~~~~~~~a~~~~~~~~~e~~~~~~~~~----- 511 (849)
T COG3899 438 LAELNLLAGRKAKLRSA-YSAAISYLERGLSLLLADAWQNQYLLALMLHRLAAENAYLRGQFELSESLIEVVLIC----- 511 (849)
T ss_pred HHHHHHhcchhhhhchh-hHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHH-----
Confidence 34455555665555555 899999999999987654322211111112222222233445555555555533322
Q ss_pred CccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH--HHHHHhcCHHHHHHHHHHHH
Q 004848 300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA--EAHVQALQFSEAQKFCQMAL 377 (727)
Q Consensus 300 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al 377 (727)
..........+......+..+++..+|+..-..++......+... +. .+....+ ......++ ......+
T Consensus 512 -~~~~~~~~~~~~~~i~~~~~q~~~~~ai~~~~~~l~~l~~~~~~~-~~--~~~~~~~~~~~~~~~~~-----~~~~~~~ 582 (849)
T COG3899 512 -AASNLDGAKVYELVIQAYTAQKQRLEAIALGQNALQLLGIAFPEK-PC--LAELNQAGEEINQLLGD-----RAIEELL 582 (849)
T ss_pred -hhhhHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccc-cc--hHHHHHHHHHHHHhhhh-----hhHHHHH
Confidence 111222334455555556667777777777444444432222111 11 1111111 11111111 1111111
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHhCCCChhHHHHHHHHHHHHHH-cCCHHHHH
Q 004848 378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA----SMTMIANDQDAEVASVDCSIGDTYLS-LSRYDEAG 452 (727)
Q Consensus 378 ~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~ 452 (727)
..+....+... ....+......+-|..+...+... .......++......++...+.+... .+++..+.
T Consensus 583 -~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gn~~~s~~~~~~~~~~~~~~~~~~~~~y 656 (849)
T COG3899 583 -NLPAMTDPDKL-----AALRILLNLILALFLTAPNLFPLIILTIVTLSLKYGNSSESAAAYVRYGDILNSFLGDFEKAY 656 (849)
T ss_pred -hChhccchhHH-----HHHHHHHHhhHHHHhhchhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 11111111111 111111111222222222222222 23333445556666666666665554 48888888
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHH
Q 004848 453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL--RESKSYCENALRI 503 (727)
Q Consensus 453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~ 503 (727)
.+...++....... .......++..+......... .+++..++..+..
T Consensus 657 ~~~~~a~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (849)
T COG3899 657 EFGKLALQLLEKFN---AKELKSKWYLEAGVFILHWNDHLKETISLFKEGLVA 706 (849)
T ss_pred HHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 88888887765543 334444555555555554444 4445555554444
No 498
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=41.64 E-value=3.1e+02 Score=25.95 Aligned_cols=55 Identities=15% Similarity=0.038 Sum_probs=46.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (727)
Q Consensus 441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (727)
-+...+...+|+...+.-++. .|........+-.+|+-.|+|++|...++-+-.+
T Consensus 10 eLL~~~sL~dai~~a~~qVka--------kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKA--------KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhc--------CCccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 455677888888887777665 7888888899999999999999999999888777
No 499
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=41.56 E-value=1.2e+02 Score=33.84 Aligned_cols=183 Identities=15% Similarity=0.192 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHh
Q 004848 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY---MLGNYSDSYDSFKNAISKLRAI 591 (727)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~ 591 (727)
..+.+..++-..|....+|+.-+++.+..-.+ ++..... ....+.+..+.++- +-|+-++|+...-.+++. .
T Consensus 199 L~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vv-e~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~---e 273 (1226)
T KOG4279|consen 199 LHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVV-ETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEK---E 273 (1226)
T ss_pred cCHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhh-ccCceEEEeeehhcccCCCccHHHHHHHHHHHHHh---c
Confidence 34556667777888888888777665543332 2111100 00001111222222 346777777766665552 2
Q ss_pred CCCCchhHHHHHHHHHHHHH---------HhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC-hHHH
Q 004848 592 GERKSAFFGVALNQMGLACV---------QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-LDDA 661 (727)
Q Consensus 592 ~~~~~~~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A 661 (727)
+.. ....|...|++|. ..+..+.|+++|++|.+. .|... .-.++|.++...|+ ++..
T Consensus 274 g~v----apDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--------eP~~~-sGIN~atLL~aaG~~Fens 340 (1226)
T KOG4279|consen 274 GPV----APDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--------EPLEY-SGINLATLLRAAGEHFENS 340 (1226)
T ss_pred CCC----CCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--------Cchhh-ccccHHHHHHHhhhhccch
Confidence 222 2345555566664 334567889999999887 45433 33567777777764 4444
Q ss_pred HHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHH---HHhCChhHHHHHHHHHHHHHhhh
Q 004848 662 IEILEFVVGIREEKLG-TANPDVDDEKRRLAELL---KEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 662 ~~~~~~al~~~~~~~g-~~~p~~~~~~~~La~~~---~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.++-.-.+.+ ..++| ...-.....|...|..+ .-.+++.+|+ +.-+..+++.|-
T Consensus 341 ~Elq~IgmkL-n~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kai-qAae~mfKLk~P 398 (1226)
T KOG4279|consen 341 LELQQIGMKL-NSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAI-QAAEMMFKLKPP 398 (1226)
T ss_pred HHHHHHHHHH-HHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHH-HHHHHHhccCCc
Confidence 4444433333 22333 22233334444444333 3457888888 888888888765
No 500
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=41.26 E-value=1.2e+02 Score=22.98 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=17.9
Q ss_pred HHcCChhHHHHHHHHhcccchh
Q 004848 276 CSLGQYNEAIPVLEQSIEIPVI 297 (727)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~ 297 (727)
-..|+|++|+.+|..+++.+..
T Consensus 17 D~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 17 DEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred hHhhhHHHHHHHHHHHHHHHHH
Confidence 4458999999999999987643
Done!