BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004849
(727 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0JMF7|HAUS6_DANRE HAUS augmin-like complex subunit 6 OS=Danio rerio GN=haus6 PE=2
SV=1
Length = 794
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 21/170 (12%)
Query: 21 CLL-LGLDPSIIGLGASNGTPRVGL--FRHSNPKLGEQLLYFILSSLRGPTQSAKDFDKV 77
CLL L P + + + +G+ F N + +++F+ + L PT++ F
Sbjct: 15 CLLCLKFKPDNVSVTKTTKHLNLGMNMFDKPNKEAFYIVIHFLFNKL-NPTRAQDVFRNC 73
Query: 78 WPIFDSAQSRDFRKVVQGIISEL--ESQGALPRSNSRVSSLATCCGPRFVELLWQLSLHA 135
W ++D +FRKV + E+ E A P+ + S L + GP+F+ L+ L+ H
Sbjct: 74 WLVWDHKSDAEFRKVAFAWLQEIANEEGSAFPKVAA--SHLLSAFGPKFINLMLHLAKHV 131
Query: 136 LREVHRRTFPADIASNPLPASLTDVAFSHAATLLPVTKARIALERRRFLK 185
+ + +TF TD + A +P + + L+R + +K
Sbjct: 132 MLKT-MKTFN------------TDGMWVPEAAAVPASSEEMELKRFQLVK 168
>sp|P70581|NUPL1_RAT Nucleoporin p58/p45 OS=Rattus norvegicus GN=Nupl1 PE=1 SV=1
Length = 585
Score = 38.1 bits (87), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 175 RIALERRRFLKNAETAVQRQAMWSGLAHEMTAE---FRGLCAE-EAYLQQELEKLHELRN 230
++ LE + LKNAE A++ Q GL HE TA FR L + E LQQ +++ EL N
Sbjct: 296 KLKLETAQELKNAEIALRTQKTPPGLQHENTAPADYFRVLVQQFEVQLQQYRQQIEELEN 355
>sp|Q8R332|NUPL1_MOUSE Nucleoporin p58/p45 OS=Mus musculus GN=Nupl1 PE=1 SV=1
Length = 587
Score = 37.7 bits (86), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 175 RIALERRRFLKNAETAVQRQAMWSGLAHEMTAE---FRGLCAE-EAYLQQELEKLHELRN 230
++ LE + LKNAE A++ Q GL HE TA FR L + E LQQ +++ EL N
Sbjct: 298 KLKLETAQELKNAEIALRTQKTPPGLQHENTAPADYFRILVQQFEVQLQQYRQQIEELEN 357
>sp|Q06116|YP117_YEAST Uncharacterized protein YPR117W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YPR117W PE=1 SV=1
Length = 2489
Score = 37.0 bits (84), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 14/125 (11%)
Query: 214 EEAYLQQELEKLHELRNKVKLEGELWDDLVSSSSQNSHLVSKATRLWESILARKNQHEVL 273
+E Y + KLHE R +K EL D+ +S+ + + L++ A K ++ +
Sbjct: 2058 KELYYTRAYLKLHEPRLFMKSGQELTFDIQTSTLKLTLLMT----------AIKKTYDRM 2107
Query: 274 ASGPIEDLIAHREHRYRISGSSLLAAMDQSSQVPYADVLSLQPSDWDEKEQSDGSSCSQI 333
SG + + + R+++ L+ + S+ P+ + L PS + E SDG++ +++
Sbjct: 2108 GSG---NRVIQKRLRWQVGTDELIWELYDESKTPFVTI-GLGPSTFIRSETSDGTNSNKV 2163
Query: 334 SDESL 338
S SL
Sbjct: 2164 SISSL 2168
>sp|Q9BVL2|NUPL1_HUMAN Nucleoporin p58/p45 OS=Homo sapiens GN=NUPL1 PE=1 SV=1
Length = 599
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 175 RIALERRRFLKNAETAVQRQAMWSGLAHEMTAE---FRGLCAE-EAYLQQELEKLHELRN 230
++ +E + LKNAE A++ Q GL HE A FR L + E LQQ +++ EL N
Sbjct: 310 KLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQIEELEN 369
>sp|Q64658|C11B2_MESAU Cytochrome P450 11B2, mitochondrial OS=Mesocricetus auratus
GN=CYP11B2 PE=2 SV=1
Length = 500
Score = 35.0 bits (79), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 47 HSNPKLGEQLLYFILSSLRGP-TQSAKDFDKVWPIFDSAQSRDFRKVVQ----------- 94
HS K QL++ S R T+ K+ + W + +R RKV Q
Sbjct: 228 HSVFKTTPQLMFLPRSLTRWTSTRVWKEHFEAWDVISEYVNRCIRKVHQELRLGSPHTYS 287
Query: 95 GIISELESQGALPRSNSRVSSLATCCG 121
GI++EL SQGALP R +S+ G
Sbjct: 288 GIVAELMSQGALPLDAIRANSIELTAG 314
>sp|Q5KU26|COL12_HUMAN Collectin-12 OS=Homo sapiens GN=COLEC12 PE=1 SV=3
Length = 742
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 71/152 (46%), Gaps = 24/152 (15%)
Query: 358 IRRWTHALQRIHKQSLQLAKANDGDGPDILRSAQDGGTSGHAESLSSTLAEHQQHLASFQ 417
++ +LQ + + LAKAN+ D+ ++Q +G E++++ ++Q+L Q
Sbjct: 258 LKEKVQSLQTLAANNSALAKANNDTLEDM--NSQLNSFTGQMENITTISQANEQNLKDLQ 315
Query: 418 VL-----------INQLKEVAPSIQKSISDCTDKVNNISSSLPPMAKHHGRATSPNQAQ- 465
L NQL+E Q +D + ++NIS + HH R + N +
Sbjct: 316 DLHKDAENRTAIKFNQLEE---RFQLFETDIVNIISNISYT-----AHHLRTLTSNLNEV 367
Query: 466 --SSGRTLESSSDDVAEVTSKMSTVQLDKVSV 495
+ TL +DD+ + + ++ ++LD VS+
Sbjct: 368 RTTCTDTLTKHTDDLTSLNNTLANIRLDSVSL 399
>sp|Q0JGK4|SPSA1_ORYSJ Probable sucrose-phosphate synthase 1 OS=Oryza sativa subsp.
japonica GN=SPS1 PE=2 SV=2
Length = 1084
Score = 33.9 bits (76), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 290 RISGSSLLAAMDQSSQVPYADVLSLQPSDWDEKEQSDGSSCSQISDESLSRVDDRGGRVH 349
RISG +L AM + + + P+D+D G S++ S ++ D GGR+
Sbjct: 835 RISGFALSTAMPLPETLKLLQLGKIPPTDFDALICGSG---SEVYYPSTAQCVDAGGRLR 891
Query: 350 PTVD-VAEIIRRWTH--ALQRIHKQSLQLAKANDGDGPDI 386
P D + I RW+H A Q I K A+DG G ++
Sbjct: 892 PDQDYLLHINHRWSHDGAKQTIAKL------AHDGSGTNV 925
>sp|A2WYE9|SPSA1_ORYSI Probable sucrose-phosphate synthase 1 OS=Oryza sativa subsp. indica
GN=SPS1 PE=2 SV=2
Length = 1084
Score = 33.9 bits (76), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 290 RISGSSLLAAMDQSSQVPYADVLSLQPSDWDEKEQSDGSSCSQISDESLSRVDDRGGRVH 349
RISG +L AM + + + P+D+D G S++ S ++ D GGR+
Sbjct: 835 RISGFALSTAMPLPETLKLLQLGKIPPTDFDALICGSG---SEVYYPSTAQCVDAGGRLR 891
Query: 350 PTVD-VAEIIRRWTH--ALQRIHKQSLQLAKANDGDGPDI 386
P D + I RW+H A Q I K A+DG G ++
Sbjct: 892 PDQDYLLHINHRWSHDGAKQTIAKL------AHDGSGTNV 925
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 254,712,152
Number of Sequences: 539616
Number of extensions: 10263104
Number of successful extensions: 26509
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 133
Number of HSP's that attempted gapping in prelim test: 25994
Number of HSP's gapped (non-prelim): 302
length of query: 727
length of database: 191,569,459
effective HSP length: 125
effective length of query: 602
effective length of database: 124,117,459
effective search space: 74718710318
effective search space used: 74718710318
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)