Query 004849
Match_columns 727
No_of_seqs 97 out of 113
Neff 2.9
Searched_HMMs 46136
Date Thu Mar 28 13:56:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004849.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004849hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14661 HAUS6_N: HAUS augmin- 100.0 1.4E-51 3E-56 408.1 19.8 239 16-263 1-247 (247)
2 PF14661 HAUS6_N: HAUS augmin- 47.8 63 0.0014 33.4 7.2 53 6-62 67-119 (247)
3 PF01603 B56: Protein phosphat 43.5 76 0.0016 35.2 7.5 86 66-153 249-356 (409)
4 PF13730 HTH_36: Helix-turn-he 35.0 59 0.0013 25.5 3.7 30 77-106 24-55 (55)
5 PF08654 DASH_Dad2: DASH compl 30.4 61 0.0013 30.3 3.6 33 351-383 44-76 (103)
6 PF10116 Host_attach: Protein 29.8 1.1E+02 0.0023 28.7 5.1 67 79-152 62-130 (138)
7 PF08514 STAG: STAG domain ; 24.4 3.2E+02 0.0068 25.8 7.2 32 77-109 5-37 (118)
8 PF11932 DUF3450: Protein of u 20.9 7.3E+02 0.016 25.6 9.6 49 181-229 31-79 (251)
9 PF10579 Rapsyn_N: Rapsyn N-te 19.5 72 0.0016 29.1 1.8 17 354-370 22-38 (80)
10 PRK04015 DNA/RNA-binding prote 18.4 60 0.0013 30.1 1.1 19 342-360 35-53 (91)
No 1
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=100.00 E-value=1.4e-51 Score=408.14 Aligned_cols=239 Identities=29% Similarity=0.407 Sum_probs=201.1
Q ss_pred HHHHHhhhcCCCCCccCCCC-cCCCCCcCccccCCcchhHHHHHHHHHhcCCcchhhhhccccCCCCCchhcHHHHHHHH
Q 004849 16 AMYTNCLLLGLDPSIIGLGA-SNGTPRVGLFRHSNPKLGEQLLYFILSSLRGPTQSAKDFDKVWPIFDSAQSRDFRKVVQ 94 (727)
Q Consensus 16 aL~tNL~LLGLDp~~d~~~~-~p~~fs~~MFdKPNkKAFE~VLYFLF~~LwDP~etkkkFRpcWPplDkkQSanFRKal~ 94 (727)
+||+||+|||||+.++|+++ ++..|+++||+|||++|||||+||||++| ||.+|+++|++||||+|++||+|||++|+
T Consensus 1 ~l~~nL~lL~~d~~~~~~~~~~~~~~~~~mf~kpn~~afe~vl~~Lf~~l-D~~~~~~~f~~~wP~~d~~q~~~fR~~~~ 79 (247)
T PF14661_consen 1 ILWTNLRLLGFDPPPDWPDITFRTLFGKNMFDKPNKKAFEWVLHFLFTIL-DPEEAKKKFRPCWPPLDKKQSANFRKALF 79 (247)
T ss_pred CHHHHHHHcCCCCCcccccccccccCCchhccCcCHHHHHHHHHHHHHHc-CHHHHHHHhhccCCCCCchhhHHHHHHHH
Confidence 48999999999999998753 56679999999999999999999999966 99999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCC-ccccccccccCchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCc--chhhhhhhhhhcchHH
Q 004849 95 GIISELESQGALPRS-NSRVSSLATCCGPRFVELLWQLSLHALREVHRRTFPADIASNPLPA--SLTDVAFSHAATLLPV 171 (727)
Q Consensus 95 rwLkELkknGaLpRi-ivRKSSLdlCgGeKFeELLl~LSshVLRKVl~rtf~AD~~~nPlPa--sLTeLi~aHkASLl~v 171 (727)
+||++|+++|.+|+. +||+|||+.|||+||++|||+||+|||+|++.+ +.++...++.+. .+......+... +..
T Consensus 80 ~~L~~l~~~g~l~~~~~v~~s~l~~p~G~KF~~lL~~fS~~VL~k~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 157 (247)
T PF14661_consen 80 RWLKELKKNGVLGRFPKVRKSMLDSPGGEKFIELLAHFSTFVLKKVIKR-FEASLPSNHPASALRLAEAFRLKPQD-LHE 157 (247)
T ss_pred HHHHHHHHcCCCCCCCceeeeeeecCCChhHHHHHHHHHHHHHHHHHHH-hhcccccCCCchhhhhhhhhccChhh-HHH
Confidence 999999999999997 899999999999999999999999999999988 666655333222 222233345544 788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhccc----ccccccccCCc
Q 004849 172 TKARIALERRRFLKNAETAVQRQAMWSGLAHEMTAEFRGLCAEEAYLQQELEKLHELRNKVKLEG----ELWDDLVSSSS 247 (727)
Q Consensus 172 l~AR~al~RrRFLr~aq~~V~rQ~qwqqlAqe~tkeyR~L~kEea~Lq~elsKme~l~~~vklg~----e~w~d~~g~sS 247 (727)
+.+++..+|++|++.+++.+..+++|+++++.++++||++++|+..+++++.++....+...-.. ..|.. +
T Consensus 158 ~~a~~~~~r~~~~~~~~~~~~~~~~~~~~aq~L~~k~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~----~- 232 (247)
T PF14661_consen 158 LLARILAHRNSFLQILQEKDAARQKYQEFAQLLRKKYRELSAECAELQAQLKKLQKSDASNRQLWEQVRNNWSG----S- 232 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhhch----h-
Confidence 89999999999999999999999999999999999999999999999988833333333222222 33443 1
Q ss_pred cCccchhhhHHHHHHH
Q 004849 248 QNSHLVSKATRLWESI 263 (727)
Q Consensus 248 ~d~~l~~~fs~~W~s~ 263 (727)
....+.+++++|++|
T Consensus 233 -~~~~~~kvr~~W~~~ 247 (247)
T PF14661_consen 233 -LQEKIQKVRELWMKV 247 (247)
T ss_pred -hHHHHHHHHHHHhcC
Confidence 578899999999853
No 2
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=47.81 E-value=63 Score=33.38 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=38.8
Q ss_pred HHHHHHhHHHHHHHHhhhcCCCCCccCCCCcCCCCCcCccccCCcchhHHHHHHHHH
Q 004849 6 EKEREIELESAMYTNCLLLGLDPSIIGLGASNGTPRVGLFRHSNPKLGEQLLYFILS 62 (727)
Q Consensus 6 ~k~~E~e~~saL~tNL~LLGLDp~~d~~~~~p~~fs~~MFdKPNkKAFE~VLYFLF~ 62 (727)
++..|.+++.+++..|.-|.-.- ..+ + ++. +.+.||+.|...=|+.+||.|=+
T Consensus 67 d~~q~~~fR~~~~~~L~~l~~~g-~l~-~-~~~-v~~s~l~~p~G~KF~~lL~~fS~ 119 (247)
T PF14661_consen 67 DKKQSANFRKALFRWLKELKKNG-VLG-R-FPK-VRKSMLDSPGGEKFIELLAHFST 119 (247)
T ss_pred CchhhHHHHHHHHHHHHHHHHcC-CCC-C-CCc-eeeeeeecCCChhHHHHHHHHHH
Confidence 45678899999999999887643 111 1 233 47789999998888888887755
No 3
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=43.54 E-value=76 Score=35.16 Aligned_cols=86 Identities=16% Similarity=0.199 Sum_probs=50.3
Q ss_pred Ccchhhhhccc---cCCCCCch----------------hcHHHHHHHHHHHHHHHH--cCCCCCCccccccccccCchhH
Q 004849 66 GPTQSAKDFDK---VWPIFDSA----------------QSRDFRKVVQGIISELES--QGALPRSNSRVSSLATCCGPRF 124 (727)
Q Consensus 66 DP~etkkkFRp---cWPplDkk----------------QSanFRKal~rwLkELkk--nGaLpRiivRKSSLdlCgGeKF 124 (727)
||..+...++. +||..+.. +..+|.+.+....+.|.+ ++..-++. ...|.+...+.|
T Consensus 249 dp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVA--ErAl~~w~n~~~ 326 (409)
T PF01603_consen 249 DPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVA--ERALYFWNNEYF 326 (409)
T ss_dssp -GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHH--HHHHGGGGSHHH
T ss_pred CchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHCCHHH
Confidence 55555544443 77776553 344555555555566655 22222322 344777899999
Q ss_pred HHHHHHHHHHHHHHHHhhhcC-CCCCCCCC
Q 004849 125 VELLWQLSLHALREVHRRTFP-ADIASNPL 153 (727)
Q Consensus 125 eELLl~LSshVLRKVl~rtf~-AD~~~nPl 153 (727)
+.++...+..++..+.-.-+. +...||..
T Consensus 327 ~~li~~~~~~i~p~i~~~L~~~~~~HWn~~ 356 (409)
T PF01603_consen 327 LSLISQNSRVILPIIFPALYRNSKNHWNQT 356 (409)
T ss_dssp HHHHHCTHHHHHHHHHHHHSSTTSS-SSTT
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999998888887554333 34567763
No 4
>PF13730 HTH_36: Helix-turn-helix domain
Probab=34.98 E-value=59 Score=25.46 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=22.8
Q ss_pred cCCCCCchhcHH--HHHHHHHHHHHHHHcCCC
Q 004849 77 VWPIFDSAQSRD--FRKVVQGIISELESQGAL 106 (727)
Q Consensus 77 cWPplDkkQSan--FRKal~rwLkELkknGaL 106 (727)
|||-.+..++.- =|+.+.++|++|++.|.+
T Consensus 24 ~~pS~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 24 CFPSQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 999766654321 189999999999998864
No 5
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=30.38 E-value=61 Score=30.31 Aligned_cols=33 Identities=33% Similarity=0.559 Sum_probs=29.2
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 004849 351 TVDVAEIIRRWTHALQRIHKQSLQLAKANDGDG 383 (727)
Q Consensus 351 ~~dvaei~rrwthalqrihkq~l~la~~n~g~g 383 (727)
+--|+.|++.|..-++-|...++.+++.++++.
T Consensus 44 ~e~Va~Vl~NW~nV~r~Is~AS~~l~~~~~~~~ 76 (103)
T PF08654_consen 44 AEAVASVLANWQNVFRAISMASLSLAKYSEGDY 76 (103)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHhhhhhcccccc
Confidence 345899999999999999999999999988754
No 6
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ].
Probab=29.76 E-value=1.1e+02 Score=28.70 Aligned_cols=67 Identities=22% Similarity=0.326 Sum_probs=51.2
Q ss_pred CCCCch--hcHHHHHHHHHHHHHHHHcCCCCCCccccccccccCchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 004849 79 PIFDSA--QSRDFRKVVQGIISELESQGALPRSNSRVSSLATCCGPRFVELLWQLSLHALREVHRRTFPADIASNP 152 (727)
Q Consensus 79 PplDkk--QSanFRKal~rwLkELkknGaLpRiivRKSSLdlCgGeKFeELLl~LSshVLRKVl~rtf~AD~~~nP 152 (727)
|..|++ ....|=+.+..||++...++.+.+ |+++..|+|.-+|-.-=.--+++++.+++..|...-|
T Consensus 62 ~~~~~~~~~~~~Fa~~vA~~L~~~~~~~~~~~-------LvlvA~p~~LG~LR~~L~~~~~~~V~~ei~kDlt~~~ 130 (138)
T PF10116_consen 62 ERTDPKEEEEERFAREVADRLEKARRAGKFDR-------LVLVAPPRFLGLLREHLSKAVRKRVVGEIDKDLTKLP 130 (138)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCe-------EEEEECHHHHHHHHHHhCHHHHHHHHHHHhhhhhcCC
Confidence 445554 455678999999999999999987 5788999999988776666666777777777755444
No 7
>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe (Fission yeast) mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version [].
Probab=24.43 E-value=3.2e+02 Score=25.76 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=25.2
Q ss_pred cCCCCCc-hhcHHHHHHHHHHHHHHHHcCCCCCC
Q 004849 77 VWPIFDS-AQSRDFRKVVQGIISELESQGALPRS 109 (727)
Q Consensus 77 cWPplDk-kQSanFRKal~rwLkELkknGaLpRi 109 (727)
-||..-+ ++...||+.+++++..|...+. ..+
T Consensus 5 ~YPli~k~~~~k~Fr~~~~~F~~~lv~~~~-~~~ 37 (118)
T PF08514_consen 5 DYPLISKGKKFKKFRKNFCEFFDQLVEQCH-SSI 37 (118)
T ss_pred cCCCcCCCcccHHHHHHHHHHHHHHHHHhc-ccc
Confidence 3776655 4688999999999999999877 443
No 8
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.92 E-value=7.3e+02 Score=25.60 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 004849 181 RRFLKNAETAVQRQAMWSGLAHEMTAEFRGLCAEEAYLQQELEKLHELR 229 (727)
Q Consensus 181 rRFLr~aq~~V~rQ~qwqqlAqe~tkeyR~L~kEea~Lq~elsKme~l~ 229 (727)
++..+.....-.+..+|..-.+.+..+|+.+.+|...++....+++.+-
T Consensus 31 ~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v 79 (251)
T PF11932_consen 31 QQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQV 79 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555566677888888888888888887766665555555444
No 9
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=19.51 E-value=72 Score=29.08 Aligned_cols=17 Identities=24% Similarity=0.731 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004849 354 VAEIIRRWTHALQRIHK 370 (727)
Q Consensus 354 vaei~rrwthalqrihk 370 (727)
-.++|++|++||+++-.
T Consensus 22 ~~~Al~~W~~aL~k~~~ 38 (80)
T PF10579_consen 22 TQQALQKWRKALEKITD 38 (80)
T ss_pred HHHHHHHHHHHHhhcCC
Confidence 46899999999998743
No 10
>PRK04015 DNA/RNA-binding protein albA; Provisional
Probab=18.36 E-value=60 Score=30.05 Aligned_cols=19 Identities=47% Similarity=0.744 Sum_probs=16.5
Q ss_pred cCCCCCCCCCccHHHHHHH
Q 004849 342 DDRGGRVHPTVDVAEIIRR 360 (727)
Q Consensus 342 ddr~~~~~~~~dvaei~rr 360 (727)
--|+...+..|||||||+|
T Consensus 35 Ka~G~aIskAV~vaEilk~ 53 (91)
T PRK04015 35 KARGRAISKAVDVAEIVRN 53 (91)
T ss_pred EEeccccchhhhHHHHHHH
Confidence 3678888999999999987
Done!