Query 004849
Match_columns 727
No_of_seqs 97 out of 113
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 07:43:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004849.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004849hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ve7_C Kinetochore protein NUF 33.9 3.1E+02 0.011 27.5 11.1 107 16-138 18-136 (250)
2 3frt_A Charged multivesicular 32.7 39 0.0013 33.6 4.4 83 346-430 1-87 (218)
3 2npp_B PP2A, B subunit, serine 14.3 3E+02 0.01 30.0 7.0 85 66-152 278-384 (449)
4 2acm_A Mucin-1; auto-catalytic 13.2 1.1E+02 0.0038 25.8 2.5 32 547-578 20-51 (66)
5 3us6_A Histidine-containing ph 12.3 8E+02 0.028 22.4 10.5 49 87-135 4-53 (153)
6 2wlv_A GAG polyprotein, HIV-2 11.8 1.6E+02 0.0055 28.2 3.5 23 348-370 119-142 (144)
7 2l3l_A Tubulin-specific chaper 10.4 2.5E+02 0.0087 25.2 4.2 55 399-453 30-86 (111)
8 3fga_B Serine/threonine-protei 9.6 9E+02 0.031 26.1 8.8 85 66-152 245-351 (403)
9 2ybf_B E3 ubiquitin-protein li 8.3 2.3E+02 0.0077 20.5 2.3 18 409-426 4-21 (27)
10 2bky_X DNA/RNA-binding protein 8.1 48 0.0016 29.0 -1.4 18 343-360 38-55 (89)
No 1
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=33.85 E-value=3.1e+02 Score=27.47 Aligned_cols=107 Identities=7% Similarity=-0.019 Sum_probs=67.5
Q ss_pred HHHHHhhhcCCCCCccCCCCcCCCCCcCcc-ccCCc----chhHHHHHHHHHhcCCcchhhhhcccc-------CCCCCc
Q 004849 16 AMYTNCLLLGLDPSIIGLGASNGTPRVGLF-RHSNP----KLGEQLLYFILSSLRGPTQSAKDFDKV-------WPIFDS 83 (727)
Q Consensus 16 aL~tNL~LLGLDp~~d~~~~~p~~fs~~MF-dKPNk----KAFE~VLYFLF~~LwDP~etkkkFRpc-------WPplDk 83 (727)
-+...|+-+|+.-.+.. .|+..-+ .+|++ +.+++.+-.++. + +++ .|..+ +|-+ .
T Consensus 18 eIv~~L~~~~i~~~~~~------n~t~~DL~~~Ptp~~v~~iy~~~l~~~~g-~-~~e----~~~~~~~~~~~~~pel-~ 84 (250)
T 2ve7_C 18 EIVIHIRNKILTGADGK------NLTKNDLYPNPKPEVLHMIYMRALQIVYG-I-RLE----HFYMMPVNSGVMYPHL-M 84 (250)
T ss_dssp HHHHHHHHHTCCHHHHH------TCCGGGTSSSCCHHHHHHHHHHHHHHHHC-C-CSG----GGSCCCSSCCCSCGGG-G
T ss_pred HHHHHHHHcCCCCcccc------CCCHHHHhcCCCHHHHHHHHHHHHHHHcC-C-CHH----HHhccchhhcccChhh-H
Confidence 35677777777632220 1455555 78986 577888887777 4 343 33322 3322 4
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCCCccccccccccCchhHHHHHHHHHHHHHHH
Q 004849 84 AQSRDFRKVVQGIISELESQGALPRSNSRVSSLATCCGPRFVELLWQLSLHALRE 138 (727)
Q Consensus 84 kQSanFRKal~rwLkELkknGaLpRiivRKSSLdlCgGeKFeELLl~LSshVLRK 138 (727)
..+..++. +++.++++.+.+..+.-.+ .-|.-+.+.|+..+|-.|..++.-+
T Consensus 85 ~~si~~l~-~~r~l~~~l~~~gv~DFtl--~DL~kP~~~Rt~~iLSalINF~~FR 136 (250)
T 2ve7_C 85 EGFLPFSN-LVTHLDSFLPICRVNDFET--ADILCPKAKRTSRFLSGIINFIHFR 136 (250)
T ss_dssp TTTHHHHH-HHHHHHHHHHHTTCCCCCH--HHHHSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHcCCCCCcH--hHhcCCchHHHHHHHHHHHHHHHHH
Confidence 66777776 8888999988766653221 1244469999999997777666544
No 2
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=32.69 E-value=39 Score=33.59 Aligned_cols=83 Identities=10% Similarity=0.271 Sum_probs=39.1
Q ss_pred CCCCCCccHHHHHHHHHHHHHH----HHHHHHHhhhhcCCCCchhhhcccCCCCcccchhhhhhHHHHHHHHHHHHHHHH
Q 004849 346 GRVHPTVDVAEIIRRWTHALQR----IHKQSLQLAKANDGDGPDILRSAQDGGTSGHAESLSSTLAEHQQHLASFQVLIN 421 (727)
Q Consensus 346 ~~~~~~~dvaei~rrwthalqr----ihkq~l~la~~n~g~gp~~~~~~~~g~~~~h~~~~~atl~eh~qh~~~~~~l~~ 421 (727)
||+ +..|..|.+|.|...|++ |-++..+|-+.-.-.--+|-.+|..|... .+-.++.-|..-+.+-..|-.+..
T Consensus 1 ~~~-~~~~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~-~arilAkelVR~Rk~~~rl~~~ka 78 (218)
T 3frt_A 1 GHM-QEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKD-VCIVLAKEMIRSRKAVSKLYASKA 78 (218)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 567899999999999876 33334333222111112333444443322 234455555555555555555555
Q ss_pred HHHhhhhhh
Q 004849 422 QLKEVAPSI 430 (727)
Q Consensus 422 qlk~~~p~~ 430 (727)
||..+.--+
T Consensus 79 qL~sV~~rl 87 (218)
T 3frt_A 79 HMNSVLMGM 87 (218)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444333
No 3
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=14.28 E-value=3e+02 Score=30.05 Aligned_cols=85 Identities=13% Similarity=0.158 Sum_probs=53.3
Q ss_pred Ccchhhhhccc---cCCCCCch----------------hcHHHHHHHHHHHHHHHH--cCCCCCCccccccccccCchhH
Q 004849 66 GPTQSAKDFDK---VWPIFDSA----------------QSRDFRKVVQGIISELES--QGALPRSNSRVSSLATCCGPRF 124 (727)
Q Consensus 66 DP~etkkkFRp---cWPplDkk----------------QSanFRKal~rwLkELkk--nGaLpRiivRKSSLdlCgGeKF 124 (727)
||..+...++. +||.++.. +..+|.+.+....+.|.+ ++.--++. ...|.....+.|
T Consensus 278 Dp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVA--ErAL~~w~N~~i 355 (449)
T 2npp_B 278 DSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVA--ERALYYWNNEYI 355 (449)
T ss_dssp CGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHH--HHHHGGGGCHHH
T ss_pred CcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHCCHHH
Confidence 77777766654 88886553 445666776666677766 23222222 334777899999
Q ss_pred HHHHHHHHHHHHHHHHhhhcC-CCCCCCC
Q 004849 125 VELLWQLSLHALREVHRRTFP-ADIASNP 152 (727)
Q Consensus 125 eELLl~LSshVLRKVl~rtf~-AD~~~nP 152 (727)
++++-.-+..++--+.-.-+. +...||+
T Consensus 356 ~~li~~n~~~IlPii~p~L~~~s~~HWn~ 384 (449)
T 2npp_B 356 MSLISDNAAKILPIMFPSLYRNSKTHWNK 384 (449)
T ss_dssp HHHHHTTHHHHHHHHHHHHTSCTTCCSST
T ss_pred HHHHHhchhhhHHhhHHHHHHHHHHhcCH
Confidence 999987777776665332222 3456776
No 4
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=13.21 E-value=1.1e+02 Score=25.84 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=24.1
Q ss_pred CCcCCCCCCCCchHHHHHHHHHHHHHHhhccc
Q 004849 547 NNRVDNAPQDSDSTYVQNLKRSVREAALSVRS 578 (727)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~l~~~v~eaal~~~~ 578 (727)
|-+.|.+.+|-...|.|+|+|.+.|-+|..-.
T Consensus 20 nlqFnSSLEdPst~YYqeLqr~is~L~lqIyk 51 (66)
T 2acm_A 20 NLQFNSSLEDPSTDYYQELQRDISEMFLQIYK 51 (66)
T ss_dssp SSCCCGGGGCTTSHHHHHHHHHHHHHHHHHCT
T ss_pred HhhhhhcccCcchHHHHHHHHHHHHHHHHHHc
Confidence 44556666666667789999999999987643
No 5
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=12.27 E-value=8e+02 Score=22.39 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCccccccccccCchhHH-HHHHHHHHHH
Q 004849 87 RDFRKVVQGIISELESQGALPRSNSRVSSLATCCGPRFV-ELLWQLSLHA 135 (727)
Q Consensus 87 anFRKal~rwLkELkknGaLpRiivRKSSLdlCgGeKFe-ELLl~LSshV 135 (727)
..++..+.+|++.|..+|.+....-+.-.|..-+|+.|+ +++-.|-.-.
T Consensus 4 ~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~ 53 (153)
T 3us6_A 4 GQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDS 53 (153)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 457889999999999999998433333445556777775 5554444444
No 6
>2wlv_A GAG polyprotein, HIV-2 capsid,; virus protein, RNA-binding, capsid protein, viral nucleoprotein, AIDS; 1.25A {Human immunodeficiency virus type 2} PDB: 2x82_A
Probab=11.79 E-value=1.6e+02 Score=28.15 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=18.8
Q ss_pred CCCCccHHHHHHHHH-HHHHHHHH
Q 004849 348 VHPTVDVAEIIRRWT-HALQRIHK 370 (727)
Q Consensus 348 ~~~~~dvaei~rrwt-halqrihk 370 (727)
.++|+.|.+|.|||- .+|++|-|
T Consensus 119 ~~~~ipvg~iykrWiIlgL~kivr 142 (144)
T 2wlv_A 119 PQNPVPVGNIYRRWIQIGLQKCVR 142 (144)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhh
Confidence 468999999999995 77877754
No 7
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=10.38 E-value=2.5e+02 Score=25.18 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=43.2
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHH--HhhhhhhHhhHhHhhhhccCCCCCCCcccc
Q 004849 399 AESLSSTLAEHQQHLASFQVLINQL--KEVAPSIQKSISDCTDKVNNISSSLPPMAK 453 (727)
Q Consensus 399 ~~~~~atl~eh~qh~~~~~~l~~ql--k~~~p~~~~~i~~~~~~v~~~~~~~~~~~~ 453 (727)
.++...-++.-.+.-..++.+|+++ .+.+-.|.+.|..|...|+..+.-||+.+.
T Consensus 30 ~E~~~~F~~~F~~~~~~Ie~~l~~~~~~~~ld~i~~~I~~Lqk~v~das~fLp~YD~ 86 (111)
T 2l3l_A 30 KENSHFFVATFARERAAVEELLERAESVERLEEAASRLQGLQKLINDSVFFLAAYDL 86 (111)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHSTTTSCHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhhhccHHHH
Confidence 3455555554555578899999887 777888999999999999999999888664
No 8
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=9.60 E-value=9e+02 Score=26.05 Aligned_cols=85 Identities=13% Similarity=0.143 Sum_probs=53.5
Q ss_pred Ccchhhhhccc---cCCCCCc----------------hhcHHHHHHHHHHHHHHHHc--CCCCCCccccccccccCchhH
Q 004849 66 GPTQSAKDFDK---VWPIFDS----------------AQSRDFRKVVQGIISELESQ--GALPRSNSRVSSLATCCGPRF 124 (727)
Q Consensus 66 DP~etkkkFRp---cWPplDk----------------kQSanFRKal~rwLkELkkn--GaLpRiivRKSSLdlCgGeKF 124 (727)
||..+...++. +||.++. ....+|++.+....+.|.+- +.--++. ...|.....+.|
T Consensus 245 Dp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVA--ErAL~~wnNe~i 322 (403)
T 3fga_B 245 DSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVA--ERALYYWNNEYI 322 (403)
T ss_dssp CGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHH--HHHHGGGGCHHH
T ss_pred CchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHH--HHHHHHhccHHH
Confidence 77777666655 7887654 34567777777777777772 3222332 335777899999
Q ss_pred HHHHHHHHHHHHHHHHhhhcC-CCCCCCC
Q 004849 125 VELLWQLSLHALREVHRRTFP-ADIASNP 152 (727)
Q Consensus 125 eELLl~LSshVLRKVl~rtf~-AD~~~nP 152 (727)
++++-.-+..++-.+.-.-+. +...||+
T Consensus 323 ~~li~~n~~~IlPii~p~L~~~~~~HWn~ 351 (403)
T 3fga_B 323 MSLISDNAAKILPIMFPSLYRNSKTHWNK 351 (403)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHTTSCCSCH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHccCH
Confidence 999877776666664222111 3445775
No 9
>2ybf_B E3 ubiquitin-protein ligase RAD18; E2 ubiquitin conjugating enzyme, E3 ubiquitin ligase translesion synthesis, PCNA ubiquitination; 2.00A {Homo sapiens}
Probab=8.32 E-value=2.3e+02 Score=20.53 Aligned_cols=18 Identities=28% Similarity=0.588 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 004849 409 HQQHLASFQVLINQLKEV 426 (727)
Q Consensus 409 h~qh~~~~~~l~~qlk~~ 426 (727)
++.|-.-||-|++|.|.-
T Consensus 4 rkkHqneFq~LVDqakk~ 21 (27)
T 2ybf_B 4 RKKHKSEFQLLVDQARKG 21 (27)
T ss_dssp HHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578999999999999853
No 10
>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A
Probab=8.11 E-value=48 Score=28.97 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=14.2
Q ss_pred CCCCCCCCCccHHHHHHH
Q 004849 343 DRGGRVHPTVDVAEIIRR 360 (727)
Q Consensus 343 dr~~~~~~~~dvaei~rr 360 (727)
-||.-.+.+|||||||+|
T Consensus 38 A~G~aIskAVdvaeilk~ 55 (89)
T 2bky_X 38 GTGREISKAVDVYNSLKD 55 (89)
T ss_dssp EETTHHHHHHHHHHHHHH
T ss_pred EechHHHHHHHHHHHHHH
Confidence 455566778999999987
Done!