Query 004849
Match_columns 727
No_of_seqs 97 out of 113
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 07:43:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004849.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004849hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bkya1 d.68.6.1 (A:9-97) DNA- 13.1 12 0.00084 31.0 -1.4 19 343-361 33-51 (89)
2 d1nh9a_ d.68.6.1 (A:) DNA-bind 12.2 12 0.00088 30.8 -1.6 18 343-360 33-50 (87)
3 d1nfja_ d.68.6.1 (A:) DNA-bind 12.1 13 0.00094 30.4 -1.4 19 343-361 33-51 (87)
4 d2pxrc1 a.73.1.1 (C:1-145) HIV 11.1 46 0.0033 29.6 1.8 22 349-370 121-143 (145)
5 d1x1ga1 b.55.1.1 (A:8-123) Ple 10.6 66 0.0048 24.0 2.4 16 353-368 100-115 (116)
6 d2bkyx1 d.68.6.1 (X:4-89) DNA- 10.4 16 0.0012 30.1 -1.4 19 343-361 35-53 (86)
7 d2cfua2 d.157.1.13 (A:20-524) 10.0 1E+02 0.0075 30.9 4.3 32 353-386 334-365 (505)
8 d2hzta1 a.4.5.69 (A:4-98) Puta 9.0 1.6E+02 0.011 23.3 4.3 72 56-138 16-92 (95)
9 d1urua_ a.238.1.1 (A:) Amphiph 8.7 4.8E+02 0.035 21.2 7.9 32 344-375 2-38 (217)
10 d1j30a_ a.25.1.1 (A:) Hypothet 8.5 89 0.0065 25.1 2.6 32 394-425 109-140 (141)
No 1
>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]}
Probab=13.11 E-value=12 Score=31.01 Aligned_cols=19 Identities=37% Similarity=0.608 Sum_probs=15.4
Q ss_pred CCCCCCCCCccHHHHHHHH
Q 004849 343 DRGGRVHPTVDVAEIIRRW 361 (727)
Q Consensus 343 dr~~~~~~~~dvaei~rrw 361 (727)
-|+-..+..||||||+||=
T Consensus 33 ArG~aIskAVdVaEiik~R 51 (89)
T d2bkya1 33 ARGRAISKAVDTVEIVRNR 51 (89)
T ss_dssp EETTHHHHHHHHHHHHHHH
T ss_pred EehhhhHHHHHHHHHHHHh
Confidence 5666678899999999963
No 2
>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=12.25 E-value=12 Score=30.75 Aligned_cols=18 Identities=50% Similarity=0.789 Sum_probs=15.1
Q ss_pred CCCCCCCCCccHHHHHHH
Q 004849 343 DRGGRVHPTVDVAEIIRR 360 (727)
Q Consensus 343 dr~~~~~~~~dvaei~rr 360 (727)
-||-..+..||||||+||
T Consensus 33 ArG~aIsrAVdVaEiik~ 50 (87)
T d1nh9a_ 33 ARGKAINKAVDVAEMIRN 50 (87)
T ss_dssp EEGGGHHHHHHHHHHHHH
T ss_pred EcchhhhHHHHHHHHHHH
Confidence 566667789999999997
No 3
>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=12.10 E-value=13 Score=30.43 Aligned_cols=19 Identities=47% Similarity=0.702 Sum_probs=15.5
Q ss_pred CCCCCCCCCccHHHHHHHH
Q 004849 343 DRGGRVHPTVDVAEIIRRW 361 (727)
Q Consensus 343 dr~~~~~~~~dvaei~rrw 361 (727)
-|+.-.+..||||||+||=
T Consensus 33 ArG~aIs~AVdVaEi~k~r 51 (87)
T d1nfja_ 33 ARGRAISRAVDVAEIVRNR 51 (87)
T ss_dssp EETTHHHHHHHHHHHHHHH
T ss_pred EehhHHHHHHHHHHHHHHh
Confidence 5666677889999999984
No 4
>d2pxrc1 a.73.1.1 (C:1-145) HIV-1 capsid protein {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=11.11 E-value=46 Score=29.64 Aligned_cols=22 Identities=36% Similarity=0.815 Sum_probs=17.2
Q ss_pred CCCccHHHHHHHHH-HHHHHHHH
Q 004849 349 HPTVDVAEIIRRWT-HALQRIHK 370 (727)
Q Consensus 349 ~~~~dvaei~rrwt-halqrihk 370 (727)
+++++|++|.|||- -+|++|=|
T Consensus 121 n~~ipvg~iykrWiilgl~k~Vk 143 (145)
T d2pxrc1 121 NPPIPVGEIYKRWIILGLNKIVR 143 (145)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhh
Confidence 68999999999995 46666644
No 5
>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.56 E-value=66 Score=24.01 Aligned_cols=16 Identities=13% Similarity=0.418 Sum_probs=13.7
Q ss_pred cHHHHHHHHHHHHHHH
Q 004849 353 DVAEIIRRWTHALQRI 368 (727)
Q Consensus 353 dvaei~rrwthalqri 368 (727)
|=.|...+|.+|||++
T Consensus 100 ~s~ee~~~Wi~ai~~~ 115 (116)
T d1x1ga1 100 SSKAERAEWIEAIKKL 115 (116)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh
Confidence 5578899999999986
No 6
>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]}
Probab=10.45 E-value=16 Score=30.12 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.5
Q ss_pred CCCCCCCCCccHHHHHHHH
Q 004849 343 DRGGRVHPTVDVAEIIRRW 361 (727)
Q Consensus 343 dr~~~~~~~~dvaei~rrw 361 (727)
-||-..+..||||||+||=
T Consensus 35 ArG~aIskAVdVaEiir~R 53 (86)
T d2bkyx1 35 GTGREISKAVDVYNSLKDR 53 (86)
T ss_dssp EETTHHHHHHHHHHHHHHH
T ss_pred EechhhHHHHHHHHHHHHh
Confidence 4666677889999999984
No 7
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.99 E-value=1e+02 Score=30.90 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchh
Q 004849 353 DVAEIIRRWTHALQRIHKQSLQLAKANDGDGPDI 386 (727)
Q Consensus 353 dvaei~rrwthalqrihkq~l~la~~n~g~gp~~ 386 (727)
.|.++|....-+++.||.|+++++ |.|..|+=
T Consensus 334 ~I~~~L~~~rD~~~~i~Dqt~~~~--N~G~t~~E 365 (505)
T d2cfua2 334 EIVEVLEKQRDLYGYLHDQTLHLA--NQGVTIGQ 365 (505)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--TTTCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HCCCCHHH
Confidence 467778888899999999999986 67877763
No 8
>d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]}
Probab=8.99 E-value=1.6e+02 Score=23.27 Aligned_cols=72 Identities=18% Similarity=0.330 Sum_probs=49.3
Q ss_pred HHHHHHHhcCCcchhhhhccccCCCCCchhcHHHHHHHHHHHHHHHHcCCCCCC-----ccccccccccCchhHHHHHHH
Q 004849 56 LLYFILSSLRGPTQSAKDFDKVWPIFDSAQSRDFRKVVQGIISELESQGALPRS-----NSRVSSLATCCGPRFVELLWQ 130 (727)
Q Consensus 56 VLYFLF~~LwDP~etkkkFRpcWPplDkkQSanFRKal~rwLkELkknGaLpRi-----ivRKSSLdlCgGeKFeELLl~ 130 (727)
|++.|+ .+|.++. .|+.-=|.+. ++++-+-|++|.++|.+-|. -.|+.+-.+..|..|..+|..
T Consensus 16 Il~~L~---~g~~rF~-el~~~l~gis-------~~~Ls~rLk~Le~~glv~r~~~~~~p~~veY~LT~~G~~L~pil~~ 84 (95)
T d2hzta1 16 ILCHLT---HGKKRTS-ELKRLMPNIT-------QKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGILDM 84 (95)
T ss_dssp HHHHHT---TCCBCHH-HHHHHCTTSC-------HHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHH
T ss_pred HHHHHH---cCCCCHH-HHHHHhhcCC-------hhHHHHHHHHHHHhHHHhheeccccccchhhhhhhhHHHHHHHHHH
Confidence 455554 3777654 3333334333 36788999999999987543 245778889999999999988
Q ss_pred HHHHHHHH
Q 004849 131 LSLHALRE 138 (727)
Q Consensus 131 LSshVLRK 138 (727)
+....-+.
T Consensus 85 l~~W~~~~ 92 (95)
T d2hzta1 85 LCAWGANH 92 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77655444
No 9
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=8.65 E-value=4.8e+02 Score=21.17 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=21.2
Q ss_pred CCCCCCCCcc-----HHHHHHHHHHHHHHHHHHHHHh
Q 004849 344 RGGRVHPTVD-----VAEIIRRWTHALQRIHKQSLQL 375 (727)
Q Consensus 344 r~~~~~~~~d-----vaei~rrwthalqrihkq~l~l 375 (727)
+-|++..|+| +..-+..+--.++++||.+-.+
T Consensus 2 ~~G~~~~T~D~~fe~~~~~~~~~e~~l~~l~k~~~~~ 38 (217)
T d1urua_ 2 NLGKVDRTADEIFDDHLNNFNRQQASANRLQKEFNNY 38 (217)
T ss_dssp CSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888876 3445666667777777766554
No 10
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Probab=8.45 E-value=89 Score=25.08 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=26.4
Q ss_pred CCcccchhhhhhHHHHHHHHHHHHHHHHHHHh
Q 004849 394 GTSGHAESLSSTLAEHQQHLASFQVLINQLKE 425 (727)
Q Consensus 394 ~~~~h~~~~~atl~eh~qh~~~~~~l~~qlk~ 425 (727)
+-.+..+-+..-+.+-+.|...|+.++++|++
T Consensus 109 ~d~~~~~~~~~i~~~E~~H~~~f~~~l~~l~~ 140 (141)
T d1j30a_ 109 GFPEVAEWFETLARAEKSHAEKFQNVLKQLKG 140 (141)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455677888889999999999999999975
Done!