Query 004850
Match_columns 727
No_of_seqs 467 out of 3662
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 13:57:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0925 mRNA splicing factor A 100.0 3E-150 7E-155 1167.7 56.8 661 43-716 24-685 (699)
2 KOG0922 DEAH-box RNA helicase 100.0 1E-146 3E-151 1192.8 54.8 626 55-700 40-669 (674)
3 KOG0924 mRNA splicing factor A 100.0 7E-144 2E-148 1154.2 46.0 626 58-701 348-976 (1042)
4 KOG0923 mRNA splicing factor A 100.0 5E-143 1E-147 1147.8 51.2 635 55-705 254-890 (902)
5 PRK11131 ATP-dependent RNA hel 100.0 5E-119 1E-123 1066.0 57.3 614 61-702 69-701 (1294)
6 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1E-114 2E-119 1033.0 57.2 612 61-700 62-689 (1283)
7 COG1643 HrpA HrpA-like helicas 100.0 2E-114 5E-119 994.6 48.1 630 46-694 30-707 (845)
8 KOG0920 ATP-dependent RNA heli 100.0 2E-112 4E-117 972.9 42.4 639 45-697 152-848 (924)
9 KOG0926 DEAH-box RNA helicase 100.0 2E-111 4E-116 918.2 44.2 637 55-700 245-1025(1172)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.2E-92 2.6E-97 828.6 52.9 571 65-697 1-577 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 2.9E-92 6.3E-97 827.4 51.7 563 63-697 2-570 (812)
12 KOG0921 Dosage compensation co 100.0 1.7E-65 3.8E-70 563.6 24.1 628 53-695 365-1070(1282)
13 PHA02653 RNA helicase NPH-II; 100.0 1E-59 2.2E-64 539.3 29.1 397 69-511 167-595 (675)
14 KOG0330 ATP-dependent RNA heli 100.0 6.6E-50 1.4E-54 409.0 16.4 342 40-421 57-409 (476)
15 KOG0331 ATP-dependent RNA heli 100.0 1E-46 2.2E-51 410.5 21.7 343 45-423 92-452 (519)
16 COG0513 SrmB Superfamily II DN 100.0 8.3E-45 1.8E-49 411.0 23.9 338 44-419 29-380 (513)
17 KOG0333 U5 snRNP-like RNA heli 100.0 3.2E-44 7E-49 378.7 18.2 365 16-420 218-625 (673)
18 KOG0345 ATP-dependent RNA heli 100.0 2.6E-43 5.7E-48 368.1 18.8 358 45-439 5-386 (567)
19 KOG0338 ATP-dependent RNA heli 100.0 6.3E-44 1.4E-48 374.9 13.9 338 44-421 181-535 (691)
20 KOG0328 Predicted ATP-dependen 100.0 8.6E-43 1.9E-47 342.7 20.6 343 41-423 24-377 (400)
21 KOG0343 RNA Helicase [RNA proc 100.0 4.3E-43 9.4E-48 371.6 18.1 342 43-422 68-425 (758)
22 PTZ00110 helicase; Provisional 100.0 3.3E-42 7.1E-47 393.4 24.5 349 37-422 123-487 (545)
23 PRK11776 ATP-dependent RNA hel 100.0 5.5E-42 1.2E-46 386.7 24.2 338 44-422 4-352 (460)
24 KOG0340 ATP-dependent RNA heli 100.0 2.5E-42 5.4E-47 349.7 16.9 340 42-421 5-363 (442)
25 KOG0342 ATP-dependent RNA heli 100.0 4.6E-41 9.9E-46 354.0 21.4 340 44-421 82-439 (543)
26 PRK11634 ATP-dependent RNA hel 100.0 1.3E-40 2.8E-45 383.7 25.4 338 44-421 6-354 (629)
27 PRK04837 ATP-dependent RNA hel 100.0 6.1E-41 1.3E-45 374.2 22.0 339 43-421 7-364 (423)
28 PLN00206 DEAD-box ATP-dependen 100.0 1.2E-40 2.5E-45 379.4 24.6 350 36-422 113-478 (518)
29 PRK01172 ski2-like helicase; P 100.0 3.3E-39 7.2E-44 379.7 35.7 518 45-598 2-580 (674)
30 PRK10590 ATP-dependent RNA hel 100.0 5.8E-40 1.3E-44 369.1 23.1 339 45-422 2-355 (456)
31 PRK04537 ATP-dependent RNA hel 100.0 9E-40 2E-44 374.6 23.9 337 45-421 10-366 (572)
32 PRK11192 ATP-dependent RNA hel 100.0 2.4E-39 5.3E-44 362.8 23.9 340 45-423 2-356 (434)
33 KOG0341 DEAD-box protein abstr 100.0 4.1E-41 8.8E-46 343.0 8.5 360 27-422 153-531 (610)
34 KOG0339 ATP-dependent RNA heli 100.0 1.1E-39 2.5E-44 342.3 17.6 347 38-422 217-578 (731)
35 KOG0326 ATP-dependent RNA heli 100.0 9.5E-40 2.1E-44 326.1 16.1 359 23-422 64-432 (459)
36 KOG0336 ATP-dependent RNA heli 100.0 9.4E-40 2E-44 335.1 15.7 345 40-423 215-576 (629)
37 KOG0348 ATP-dependent RNA heli 100.0 6.1E-39 1.3E-43 339.3 20.7 354 41-420 133-555 (708)
38 PRK02362 ski2-like helicase; P 100.0 1.4E-37 3.1E-42 368.5 34.9 528 45-601 2-623 (737)
39 PRK01297 ATP-dependent RNA hel 100.0 1.7E-38 3.8E-43 359.3 24.7 341 41-421 84-444 (475)
40 PTZ00424 helicase 45; Provisio 100.0 1.6E-38 3.4E-43 352.9 23.0 342 42-423 26-378 (401)
41 KOG0335 ATP-dependent RNA heli 100.0 9.2E-39 2E-43 342.5 14.3 364 19-418 49-443 (482)
42 KOG0347 RNA helicase [RNA proc 100.0 1.3E-38 2.9E-43 337.6 11.6 342 43-421 180-572 (731)
43 KOG0332 ATP-dependent RNA heli 100.0 2.9E-37 6.3E-42 314.5 16.9 341 43-420 89-444 (477)
44 KOG0346 RNA helicase [RNA proc 100.0 7.5E-37 1.6E-41 317.1 17.8 339 44-422 19-413 (569)
45 PRK00254 ski2-like helicase; P 100.0 8E-35 1.7E-39 344.2 32.5 525 45-602 2-615 (720)
46 TIGR03817 DECH_helic helicase/ 100.0 2.2E-35 4.7E-40 346.7 26.5 337 50-418 20-385 (742)
47 KOG0334 RNA helicase [RNA proc 100.0 7.1E-35 1.5E-39 332.3 15.9 352 32-421 353-722 (997)
48 KOG0327 Translation initiation 100.0 3.4E-34 7.3E-39 295.2 16.1 345 36-423 18-374 (397)
49 KOG0350 DEAD-box ATP-dependent 100.0 3.2E-34 6.8E-39 301.9 13.6 353 36-423 119-544 (620)
50 PLN03137 ATP-dependent DNA hel 100.0 1.1E-32 2.5E-37 321.9 25.1 329 45-422 436-790 (1195)
51 TIGR00614 recQ_fam ATP-depende 100.0 1.4E-32 2.9E-37 310.3 23.8 315 60-423 5-337 (470)
52 PRK11057 ATP-dependent DNA hel 100.0 1.7E-32 3.6E-37 317.7 23.1 323 50-422 8-346 (607)
53 KOG4284 DEAD box protein [Tran 100.0 5.3E-33 1.2E-37 299.0 17.0 342 43-420 24-380 (980)
54 TIGR02621 cas3_GSU0051 CRISPR- 100.0 9.5E-32 2.1E-36 310.4 23.9 358 63-459 13-431 (844)
55 KOG0337 ATP-dependent RNA heli 100.0 7.5E-33 1.6E-37 286.2 11.5 339 44-421 21-370 (529)
56 KOG0344 ATP-dependent RNA heli 100.0 2.9E-32 6.4E-37 294.0 15.9 354 32-423 120-499 (593)
57 TIGR01389 recQ ATP-dependent D 100.0 6.6E-30 1.4E-34 296.6 23.9 311 61-422 8-334 (591)
58 PRK13767 ATP-dependent helicas 100.0 1.6E-29 3.5E-34 302.8 25.7 333 51-415 18-396 (876)
59 TIGR00580 mfd transcription-re 100.0 4.2E-29 9E-34 296.5 22.9 315 53-419 438-770 (926)
60 PRK10689 transcription-repair 100.0 9.3E-29 2E-33 299.4 21.0 309 53-418 588-918 (1147)
61 PRK10917 ATP-dependent DNA hel 100.0 1E-27 2.2E-32 280.9 24.3 302 65-417 260-587 (681)
62 TIGR00643 recG ATP-dependent D 100.0 1.1E-27 2.3E-32 278.9 21.9 316 54-417 224-564 (630)
63 COG1202 Superfamily II helicas 100.0 3.7E-27 8.1E-32 251.8 23.5 439 45-526 195-679 (830)
64 COG1201 Lhr Lhr-like helicases 99.9 1.4E-26 3.1E-31 266.3 25.7 388 51-476 8-438 (814)
65 TIGR01587 cas3_core CRISPR-ass 99.9 9.2E-27 2E-31 254.7 23.2 292 83-420 1-337 (358)
66 PRK09751 putative ATP-dependen 99.9 1.3E-26 2.7E-31 282.1 21.2 298 86-413 1-379 (1490)
67 TIGR03158 cas3_cyano CRISPR-as 99.9 1.3E-25 2.8E-30 244.4 24.0 288 70-405 1-357 (357)
68 PRK09401 reverse gyrase; Revie 99.9 4.8E-26 1E-30 276.5 17.6 302 58-405 72-429 (1176)
69 COG1204 Superfamily II helicas 99.9 4.9E-24 1.1E-28 248.6 28.5 520 49-595 14-630 (766)
70 COG0514 RecQ Superfamily II DN 99.9 1.4E-24 3.1E-29 241.6 18.4 309 63-422 14-340 (590)
71 PRK12898 secA preprotein trans 99.9 9.4E-24 2E-28 239.5 20.9 122 261-420 457-587 (656)
72 PRK14701 reverse gyrase; Provi 99.9 4.4E-24 9.5E-29 264.5 16.0 324 55-418 68-455 (1638)
73 KOG0329 ATP-dependent RNA heli 99.9 6.7E-24 1.4E-28 206.8 12.6 303 44-421 42-357 (387)
74 TIGR01054 rgy reverse gyrase. 99.9 3E-23 6.5E-28 252.6 19.8 289 55-377 67-412 (1171)
75 PRK13766 Hef nuclease; Provisi 99.9 5.8E-23 1.3E-27 246.4 21.1 316 64-421 13-481 (773)
76 KOG0349 Putative DEAD-box RNA 99.9 5.1E-24 1.1E-28 220.7 10.2 225 161-417 339-613 (725)
77 PHA02558 uvsW UvsW helicase; P 99.9 1.1E-22 2.4E-27 231.2 22.0 296 64-411 112-443 (501)
78 PRK09200 preprotein translocas 99.9 1.2E-22 2.6E-27 235.2 21.4 314 64-421 76-543 (790)
79 COG1111 MPH1 ERCC4-like helica 99.9 1.6E-22 3.4E-27 215.9 20.2 317 65-419 14-481 (542)
80 TIGR03714 secA2 accessory Sec 99.9 6.6E-22 1.4E-26 226.9 21.9 121 262-421 409-539 (762)
81 COG1205 Distinct helicase fami 99.9 5.8E-22 1.3E-26 234.3 21.5 331 55-418 59-421 (851)
82 TIGR00963 secA preprotein tran 99.9 3.6E-21 7.9E-26 219.6 21.0 314 63-421 53-519 (745)
83 KOG0354 DEAD-box like helicase 99.9 2.7E-21 5.9E-26 217.7 19.1 323 63-419 59-529 (746)
84 PRK09694 helicase Cas3; Provis 99.9 2.2E-20 4.8E-25 220.2 24.4 303 65-407 285-662 (878)
85 PRK05580 primosome assembly pr 99.8 3.9E-20 8.6E-25 216.3 19.6 312 66-415 144-545 (679)
86 COG4098 comFA Superfamily II D 99.8 1.9E-19 4.1E-24 183.1 21.0 301 62-415 95-412 (441)
87 TIGR00603 rad25 DNA repair hel 99.8 4.8E-19 1E-23 203.6 20.4 300 65-422 254-610 (732)
88 PF07717 OB_NTP_bind: Oligonuc 99.8 4.5E-20 9.8E-25 167.7 8.5 104 593-696 1-114 (114)
89 KOG0351 ATP-dependent DNA heli 99.8 4.8E-19 1E-23 208.3 18.0 318 59-423 257-596 (941)
90 KOG0921 Dosage compensation co 99.8 4.5E-21 9.7E-26 213.6 -1.0 451 61-532 401-896 (1282)
91 KOG0952 DNA/RNA helicase MER3/ 99.8 8E-18 1.7E-22 191.7 24.6 483 63-564 107-683 (1230)
92 TIGR00595 priA primosomal prot 99.8 6E-19 1.3E-23 199.4 14.6 292 86-414 2-376 (505)
93 KOG0352 ATP-dependent DNA heli 99.8 1E-18 2.2E-23 181.7 13.3 310 69-423 23-366 (641)
94 PF04408 HA2: Helicase associa 99.8 6E-19 1.3E-23 156.6 6.2 91 469-559 1-102 (102)
95 PRK12906 secA preprotein trans 99.7 7.1E-17 1.5E-21 186.2 20.0 121 262-420 425-554 (796)
96 PRK04914 ATP-dependent helicas 99.7 8.6E-17 1.9E-21 191.1 19.9 118 270-418 484-604 (956)
97 KOG0951 RNA helicase BRR2, DEA 99.7 5.5E-16 1.2E-20 178.8 23.1 435 51-504 296-824 (1674)
98 KOG0353 ATP-dependent DNA heli 99.7 3.3E-16 7.1E-21 160.6 16.5 344 27-421 52-469 (695)
99 smart00847 HA2 Helicase associ 99.7 5.1E-17 1.1E-21 141.7 7.6 90 469-559 1-92 (92)
100 PRK11448 hsdR type I restricti 99.7 1.1E-15 2.4E-20 185.5 21.8 320 66-417 413-813 (1123)
101 COG4581 Superfamily II RNA hel 99.7 1.8E-15 3.9E-20 177.4 18.0 326 65-418 118-536 (1041)
102 COG1061 SSL2 DNA or RNA helica 99.6 1.3E-14 2.8E-19 162.2 21.3 288 63-407 33-376 (442)
103 KOG0948 Nuclear exosomal RNA h 99.6 1.8E-15 4E-20 166.9 12.6 321 67-419 130-539 (1041)
104 COG1200 RecG RecG-like helicas 99.6 5.6E-15 1.2E-19 164.9 16.4 305 65-420 261-592 (677)
105 PRK13104 secA preprotein trans 99.6 4.9E-15 1.1E-19 171.9 16.5 121 262-420 429-588 (896)
106 COG1203 CRISPR-associated heli 99.6 2.7E-14 5.9E-19 168.9 20.8 309 66-418 195-549 (733)
107 PRK12904 preprotein translocas 99.6 2.3E-14 4.9E-19 166.3 19.2 122 261-420 414-574 (830)
108 TIGR00631 uvrb excinuclease AB 99.6 1.6E-14 3.4E-19 167.5 16.6 128 262-420 427-554 (655)
109 cd00268 DEADc DEAD-box helicas 99.6 1E-14 2.2E-19 146.3 12.2 180 46-227 1-185 (203)
110 PRK05298 excinuclease ABC subu 99.5 7.7E-14 1.7E-18 162.9 15.9 125 263-418 432-556 (652)
111 COG1197 Mfd Transcription-repa 99.5 2.6E-13 5.5E-18 159.6 18.9 296 68-420 596-914 (1139)
112 COG1116 TauB ABC-type nitrate/ 99.5 2.7E-14 5.9E-19 142.7 8.8 145 77-230 25-195 (248)
113 KOG0947 Cytoplasmic exosomal R 99.5 2E-13 4.4E-18 154.5 16.5 320 65-418 296-722 (1248)
114 COG1126 GlnQ ABC-type polar am 99.5 4.1E-14 8.8E-19 137.5 7.4 149 77-233 24-204 (240)
115 COG1136 SalX ABC-type antimicr 99.5 6E-14 1.3E-18 140.1 8.3 151 77-233 27-210 (226)
116 cd00079 HELICc Helicase superf 99.5 1.7E-13 3.7E-18 126.7 10.3 129 250-415 2-131 (131)
117 PRK12899 secA preprotein trans 99.5 1.6E-12 3.4E-17 151.0 20.3 125 67-195 93-226 (970)
118 KOG0950 DNA polymerase theta/e 99.5 6.2E-13 1.3E-17 151.8 16.3 330 58-421 215-613 (1008)
119 PRK13107 preprotein translocas 99.5 1.7E-12 3.8E-17 150.5 19.3 121 262-420 434-592 (908)
120 COG1135 AbcC ABC-type metal io 99.5 8.2E-14 1.8E-18 142.1 7.1 151 77-234 28-211 (339)
121 COG1121 ZnuC ABC-type Mn/Zn tr 99.4 1.3E-13 2.9E-18 139.7 8.0 143 77-227 26-200 (254)
122 PRK12900 secA preprotein trans 99.4 3.8E-13 8.3E-18 156.4 12.1 162 218-421 535-713 (1025)
123 COG1120 FepC ABC-type cobalami 99.4 1E-13 2.2E-18 141.2 5.9 158 77-235 24-209 (258)
124 PF00270 DEAD: DEAD/DEAH box h 99.4 2.5E-13 5.5E-18 131.7 7.9 154 68-227 1-163 (169)
125 COG1117 PstB ABC-type phosphat 99.4 1.4E-13 3.1E-18 133.1 5.4 162 77-242 29-228 (253)
126 PF00271 Helicase_C: Helicase 99.4 2E-13 4.4E-18 114.9 4.1 71 312-407 7-77 (78)
127 COG1124 DppF ABC-type dipeptid 99.4 9.8E-13 2.1E-17 130.5 8.4 152 77-234 29-211 (252)
128 COG3839 MalK ABC-type sugar tr 99.4 9.7E-13 2.1E-17 139.2 7.3 156 77-233 25-202 (338)
129 COG3638 ABC-type phosphate/pho 99.3 1.3E-12 2.8E-17 128.7 6.2 151 77-234 26-217 (258)
130 COG4525 TauB ABC-type taurine 99.3 4E-12 8.7E-17 121.2 7.7 146 77-231 27-198 (259)
131 COG1125 OpuBA ABC-type proline 99.3 1.8E-12 3.9E-17 128.7 4.7 152 77-233 23-204 (309)
132 COG1127 Ttg2A ABC-type transpo 99.3 5E-12 1.1E-16 125.0 6.8 153 77-235 30-216 (263)
133 COG2884 FtsE Predicted ATPase 99.3 5.9E-12 1.3E-16 119.9 6.8 144 76-227 23-198 (223)
134 COG3842 PotA ABC-type spermidi 99.3 2.5E-12 5.3E-17 136.9 4.8 150 77-233 27-205 (352)
135 COG3840 ThiQ ABC-type thiamine 99.3 5.8E-12 1.3E-16 119.0 6.2 149 77-232 21-197 (231)
136 TIGR02314 ABC_MetN D-methionin 99.3 1.2E-11 2.7E-16 133.4 8.8 149 78-233 28-209 (343)
137 PRK11650 ugpC glycerol-3-phosp 99.2 1.2E-11 2.6E-16 134.4 8.5 150 78-234 27-204 (356)
138 TIGR01186 proV glycine betaine 99.2 1.3E-11 2.7E-16 134.1 8.5 149 78-233 16-198 (363)
139 COG1122 CbiO ABC-type cobalt t 99.2 7.2E-12 1.6E-16 127.5 6.1 150 77-233 26-207 (235)
140 PRK11432 fbpC ferric transport 99.2 1.7E-11 3.6E-16 133.0 8.4 150 78-234 29-206 (351)
141 COG1131 CcmA ABC-type multidru 99.2 1.5E-11 3.3E-16 130.2 7.6 151 77-234 27-206 (293)
142 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.2 2.1E-11 4.4E-16 124.0 8.2 144 78-228 27-203 (218)
143 TIGR03265 PhnT2 putative 2-ami 99.2 2E-11 4.4E-16 132.5 8.5 149 78-233 27-203 (353)
144 PRK09452 potA putrescine/sperm 99.2 2.1E-11 4.5E-16 133.2 8.4 150 78-234 37-214 (375)
145 smart00490 HELICc helicase sup 99.2 1.3E-11 2.8E-16 104.1 5.2 71 312-407 11-81 (82)
146 TIGR00960 3a0501s02 Type II (G 99.2 1.8E-11 3.8E-16 124.3 7.2 142 78-227 26-199 (216)
147 COG1110 Reverse gyrase [DNA re 99.2 8.1E-10 1.8E-14 127.4 21.3 282 59-376 75-419 (1187)
148 COG1118 CysA ABC-type sulfate/ 99.2 1.3E-11 2.8E-16 125.9 6.1 156 77-233 24-206 (345)
149 cd03226 ABC_cobalt_CbiO_domain 99.2 2.5E-11 5.5E-16 122.1 8.0 149 77-233 22-194 (205)
150 PRK13537 nodulation ABC transp 99.2 2.2E-11 4.8E-16 130.0 7.8 155 78-234 30-207 (306)
151 cd03293 ABC_NrtD_SsuB_transpor 99.2 3E-11 6.6E-16 122.9 8.4 148 77-233 26-200 (220)
152 PRK11607 potG putrescine trans 99.2 2.9E-11 6.3E-16 132.3 8.7 150 78-234 42-219 (377)
153 cd03259 ABC_Carb_Solutes_like 99.2 3E-11 6.4E-16 122.4 8.1 150 77-233 22-199 (213)
154 KOG4150 Predicted ATP-dependen 99.2 1.4E-10 3E-15 125.2 13.1 315 57-413 277-634 (1034)
155 cd03261 ABC_Org_Solvent_Resist 99.2 2.9E-11 6.3E-16 124.4 7.8 150 77-233 22-205 (235)
156 PRK11000 maltose/maltodextrin 99.2 3.3E-11 7.1E-16 131.9 8.4 150 77-233 25-202 (369)
157 cd03298 ABC_ThiQ_thiamine_tran 99.2 3.8E-11 8.3E-16 121.4 8.3 156 77-233 20-197 (211)
158 PRK10851 sulfate/thiosulfate t 99.2 3.6E-11 7.8E-16 130.6 8.7 150 78-234 25-206 (353)
159 cd03256 ABC_PhnC_transporter A 99.2 3.7E-11 8E-16 124.0 8.2 150 77-233 23-213 (241)
160 TIGR02673 FtsE cell division A 99.2 3.9E-11 8.5E-16 121.5 8.1 149 77-233 24-205 (214)
161 COG0411 LivG ABC-type branched 99.2 2.9E-11 6.3E-16 120.2 6.5 151 77-234 26-219 (250)
162 PRK13536 nodulation factor exp 99.2 4.3E-11 9.3E-16 129.3 8.3 156 77-234 63-241 (340)
163 cd03230 ABC_DR_subfamily_A Thi 99.2 6.7E-11 1.5E-15 115.7 8.9 59 167-227 96-156 (173)
164 PRK11153 metN DL-methionine tr 99.2 4.9E-11 1.1E-15 129.4 8.4 149 78-233 28-209 (343)
165 PRK11629 lolD lipoprotein tran 99.2 5.4E-11 1.2E-15 122.2 8.3 145 77-228 31-208 (233)
166 TIGR01188 drrA daunorubicin re 99.2 3.5E-11 7.7E-16 128.4 7.1 150 77-234 15-193 (302)
167 PRK10070 glycine betaine trans 99.2 5.8E-11 1.3E-15 130.5 8.6 149 78-233 51-233 (400)
168 TIGR01166 cbiO cobalt transpor 99.2 5.8E-11 1.3E-15 118.0 7.9 142 78-227 15-188 (190)
169 TIGR02211 LolD_lipo_ex lipopro 99.2 5.7E-11 1.2E-15 121.0 7.9 143 78-227 28-203 (221)
170 PRK11144 modC molybdate transp 99.2 5.5E-11 1.2E-15 129.5 8.2 149 78-233 21-197 (352)
171 PRK10584 putative ABC transpor 99.2 6.3E-11 1.4E-15 121.3 8.2 144 78-228 33-209 (228)
172 TIGR02315 ABC_phnC phosphonate 99.2 4.7E-11 1E-15 123.4 7.2 145 77-228 24-208 (243)
173 cd03296 ABC_CysA_sulfate_impor 99.2 6.5E-11 1.4E-15 122.1 8.2 156 77-233 24-205 (239)
174 PRK13543 cytochrome c biogenes 99.2 7.3E-11 1.6E-15 119.6 8.4 143 77-227 33-198 (214)
175 PRK09536 btuD corrinoid ABC tr 99.2 5.4E-11 1.2E-15 130.8 7.9 155 78-234 26-208 (402)
176 cd03258 ABC_MetN_methionine_tr 99.1 7E-11 1.5E-15 121.4 7.9 149 78-233 28-209 (233)
177 cd03229 ABC_Class3 This class 99.1 7.3E-11 1.6E-15 116.0 7.6 60 167-227 101-162 (178)
178 TIGR03608 L_ocin_972_ABC putat 99.1 8.4E-11 1.8E-15 118.4 8.2 143 78-228 21-196 (206)
179 TIGR03258 PhnT 2-aminoethylpho 99.1 1.8E-10 3.9E-15 125.4 11.4 150 78-233 28-207 (362)
180 cd03301 ABC_MalK_N The N-termi 99.1 7.6E-11 1.6E-15 119.3 7.9 143 78-227 23-192 (213)
181 cd03269 ABC_putative_ATPase Th 99.1 6.7E-11 1.4E-15 119.5 7.4 147 78-233 23-196 (210)
182 cd03266 ABC_NatA_sodium_export 99.1 5.9E-11 1.3E-15 120.6 7.0 148 78-233 28-204 (218)
183 cd03265 ABC_DrrA DrrA is the A 99.1 7.4E-11 1.6E-15 120.1 7.6 150 77-233 22-200 (220)
184 cd03246 ABCC_Protease_Secretio 99.1 9.3E-11 2E-15 114.7 7.9 60 167-228 97-158 (173)
185 COG4555 NatA ABC-type Na+ tran 99.1 3E-11 6.5E-16 116.1 4.2 162 72-235 19-203 (245)
186 PRK13650 cbiO cobalt transport 99.1 7E-11 1.5E-15 124.7 7.5 146 77-229 29-204 (279)
187 TIGR01288 nodI ATP-binding ABC 99.1 8.1E-11 1.8E-15 125.7 8.0 150 77-234 26-204 (303)
188 cd03219 ABC_Mj1267_LivG_branch 99.1 1.1E-10 2.3E-15 120.3 8.5 149 77-227 22-204 (236)
189 PRK11247 ssuB aliphatic sulfon 99.1 8.9E-11 1.9E-15 122.2 7.9 150 77-233 34-202 (257)
190 cd03294 ABC_Pro_Gly_Bertaine T 99.1 1E-10 2.2E-15 122.8 8.4 150 77-233 46-229 (269)
191 TIGR03864 PQQ_ABC_ATP ABC tran 99.1 1E-10 2.2E-15 120.5 7.9 144 78-228 24-195 (236)
192 cd03292 ABC_FtsE_transporter F 99.1 8.4E-11 1.8E-15 119.1 7.1 142 78-227 24-197 (214)
193 TIGR02142 modC_ABC molybdenum 99.1 1.1E-10 2.3E-15 127.3 8.4 149 78-233 20-200 (354)
194 cd03225 ABC_cobalt_CbiO_domain 99.1 9.6E-11 2.1E-15 118.4 7.4 142 78-227 24-195 (211)
195 PRK15079 oligopeptide ABC tran 99.1 1.1E-10 2.3E-15 125.9 8.2 150 78-233 44-230 (331)
196 TIGR01277 thiQ thiamine ABC tr 99.1 1.2E-10 2.7E-15 117.9 8.1 150 77-227 20-190 (213)
197 cd03262 ABC_HisP_GlnQ_permease 99.1 9.2E-11 2E-15 118.7 7.0 148 78-233 23-203 (213)
198 PRK11831 putative ABC transpor 99.1 1.6E-10 3.5E-15 121.3 9.0 150 77-233 29-212 (269)
199 cd03235 ABC_Metallic_Cations A 99.1 8.9E-11 1.9E-15 118.8 6.8 153 77-233 21-200 (213)
200 TIGR01184 ntrCD nitrate transp 99.1 1.3E-10 2.8E-15 119.1 8.1 153 78-233 8-183 (230)
201 PRK11248 tauB taurine transpor 99.1 1.5E-10 3.2E-15 120.6 8.4 147 78-233 24-197 (255)
202 cd03218 ABC_YhbG The ABC trans 99.1 1.3E-10 2.8E-15 119.3 7.9 148 78-233 23-201 (232)
203 cd03215 ABC_Carb_Monos_II This 99.1 2.4E-10 5.1E-15 112.8 9.4 65 167-233 105-172 (182)
204 cd03268 ABC_BcrA_bacitracin_re 99.1 1.1E-10 2.4E-15 117.8 7.0 148 78-233 23-194 (208)
205 PRK10771 thiQ thiamine transpo 99.1 1.5E-10 3.3E-15 118.8 8.2 150 77-233 21-198 (232)
206 cd03224 ABC_TM1139_LivF_branch 99.1 1.3E-10 2.8E-15 118.4 7.6 155 77-233 22-200 (222)
207 cd03237 ABC_RNaseL_inhibitor_d 99.1 3.2E-10 6.9E-15 117.3 10.6 147 78-233 22-184 (246)
208 COG0444 DppD ABC-type dipeptid 99.1 1.2E-10 2.7E-15 120.6 7.3 153 78-234 28-223 (316)
209 PRK11308 dppF dipeptide transp 99.1 1.5E-10 3.3E-15 124.6 8.3 152 77-234 37-224 (327)
210 PRK13637 cbiO cobalt transport 99.1 1.1E-10 2.4E-15 123.6 7.1 151 78-233 30-213 (287)
211 PRK13646 cbiO cobalt transport 99.1 1.3E-10 2.9E-15 123.0 7.5 150 78-233 30-214 (286)
212 cd03295 ABC_OpuCA_Osmoprotecti 99.1 1.8E-10 3.9E-15 119.0 8.2 152 77-233 23-204 (242)
213 PRK13635 cbiO cobalt transport 99.1 1.6E-10 3.5E-15 121.9 7.8 144 78-228 30-203 (279)
214 PRK13647 cbiO cobalt transport 99.1 1.5E-10 3.2E-15 121.9 7.4 150 77-234 27-207 (274)
215 TIGR03522 GldA_ABC_ATP gliding 99.1 1.1E-10 2.3E-15 124.6 6.4 149 78-235 25-202 (301)
216 TIGR03415 ABC_choXWV_ATP choli 99.1 2E-10 4.4E-15 125.4 8.5 149 78-233 47-233 (382)
217 PRK13634 cbiO cobalt transport 99.1 2E-10 4.4E-15 121.9 8.3 150 78-233 30-214 (290)
218 PRK13539 cytochrome c biogenes 99.1 1.6E-10 3.6E-15 116.4 7.3 143 77-227 24-188 (207)
219 PRK10908 cell division protein 99.1 1.7E-10 3.6E-15 117.6 7.3 147 78-232 25-204 (222)
220 PRK13538 cytochrome c biogenes 99.1 1.3E-10 2.9E-15 116.8 6.3 143 77-227 23-190 (204)
221 PRK11300 livG leucine/isoleuci 99.1 2.1E-10 4.5E-15 119.5 7.9 150 77-233 27-222 (255)
222 PRK13540 cytochrome c biogenes 99.1 2.2E-10 4.8E-15 114.8 7.8 150 77-228 23-189 (200)
223 PRK11264 putative amino-acid A 99.1 2.3E-10 5E-15 118.8 8.1 148 78-233 26-212 (250)
224 PLN03142 Probable chromatin-re 99.1 5.1E-09 1.1E-13 125.9 20.1 113 279-422 487-602 (1033)
225 COG4175 ProV ABC-type proline/ 99.1 1.2E-10 2.6E-15 119.1 5.3 146 77-229 50-228 (386)
226 cd03231 ABC_CcmA_heme_exporter 99.1 2.3E-10 4.9E-15 114.8 7.2 143 77-227 22-186 (201)
227 PRK11124 artP arginine transpo 99.1 1.9E-10 4.1E-15 118.9 6.8 148 78-233 25-209 (242)
228 PRK13644 cbiO cobalt transport 99.1 2.6E-10 5.5E-15 120.1 7.8 143 78-228 25-198 (274)
229 cd03232 ABC_PDR_domain2 The pl 99.1 3.2E-10 7E-15 112.8 8.1 127 77-227 29-169 (192)
230 TIGR01407 dinG_rel DnaQ family 99.1 1.1E-08 2.4E-13 123.9 22.9 139 261-415 657-811 (850)
231 PRK13651 cobalt transporter AT 99.1 1.9E-10 4.1E-15 122.7 6.9 150 77-233 29-233 (305)
232 TIGR03005 ectoine_ehuA ectoine 99.1 2.5E-10 5.4E-15 118.7 7.6 149 78-233 23-215 (252)
233 PRK13632 cbiO cobalt transport 99.1 2.8E-10 6E-15 119.7 7.8 145 77-228 31-205 (271)
234 COG1137 YhbG ABC-type (unclass 99.1 1.3E-10 2.9E-15 111.5 4.9 149 77-227 26-200 (243)
235 PRK10575 iron-hydroxamate tran 99.1 2.3E-10 5E-15 119.9 7.2 155 78-233 34-216 (265)
236 TIGR03411 urea_trans_UrtD urea 99.1 3.3E-10 7.1E-15 117.1 8.2 148 77-233 24-210 (242)
237 TIGR03740 galliderm_ABC gallid 99.1 2.9E-10 6.3E-15 116.0 7.7 147 78-233 23-192 (223)
238 cd03247 ABCC_cytochrome_bd The 99.1 2.2E-10 4.8E-15 112.6 6.4 130 78-228 25-159 (178)
239 PRK10895 lipopolysaccharide AB 99.1 3E-10 6.5E-15 117.3 7.7 149 77-233 25-205 (241)
240 PRK11614 livF leucine/isoleuci 99.0 2.3E-10 5E-15 117.9 6.8 155 77-233 27-205 (237)
241 cd03257 ABC_NikE_OppD_transpor 99.0 2.2E-10 4.7E-15 117.2 6.6 149 77-227 27-207 (228)
242 PRK10247 putative ABC transpor 99.0 3.4E-10 7.5E-15 115.6 7.9 144 78-228 30-200 (225)
243 COG1123 ATPase components of v 99.0 3.5E-10 7.5E-15 125.7 8.4 153 77-234 31-224 (539)
244 cd03238 ABC_UvrA The excision 99.0 6.2E-10 1.3E-14 108.8 9.3 126 77-228 17-151 (176)
245 PRK09493 glnQ glutamine ABC tr 99.0 3E-10 6.5E-15 117.2 7.5 143 78-228 24-198 (240)
246 cd03233 ABC_PDR_domain1 The pl 99.0 6E-10 1.3E-14 111.9 9.4 131 77-224 29-177 (202)
247 TIGR01189 ccmA heme ABC export 99.0 3.2E-10 6.9E-15 113.5 7.4 141 78-226 23-187 (198)
248 PRK09984 phosphonate/organopho 99.0 2.8E-10 6E-15 119.1 7.3 155 78-233 27-221 (262)
249 PRK13642 cbiO cobalt transport 99.0 3.3E-10 7.1E-15 119.5 7.9 152 77-229 29-204 (277)
250 KOG0953 Mitochondrial RNA heli 99.0 2.4E-09 5.1E-14 116.2 14.4 276 81-419 191-477 (700)
251 TIGR02982 heterocyst_DevA ABC 99.0 2.8E-10 6.2E-15 115.8 7.2 147 78-231 28-207 (220)
252 cd03297 ABC_ModC_molybdenum_tr 99.0 3.5E-10 7.6E-15 114.6 7.8 148 78-233 21-200 (214)
253 cd03223 ABCD_peroxisomal_ALDP 99.0 1.2E-09 2.6E-14 106.1 11.1 122 77-228 23-150 (166)
254 TIGR02769 nickel_nikE nickel i 99.0 4.4E-10 9.6E-15 117.8 8.6 150 78-233 34-219 (265)
255 cd03213 ABCG_EPDR ABCG transpo 99.0 5E-10 1.1E-14 111.7 8.6 127 77-227 31-172 (194)
256 cd03234 ABCG_White The White s 99.0 4.2E-10 9E-15 115.1 8.2 155 77-233 29-212 (226)
257 PRK15093 antimicrobial peptide 99.0 3.8E-10 8.2E-15 121.9 8.2 152 77-233 29-227 (330)
258 PRK13633 cobalt transporter AT 99.0 4E-10 8.6E-15 119.1 8.1 144 78-228 33-207 (280)
259 PRK10619 histidine/lysine/argi 99.0 3.7E-10 8.1E-15 117.8 7.8 143 78-227 28-213 (257)
260 PRK10762 D-ribose transporter 99.0 3.8E-10 8.2E-15 129.1 8.5 149 77-233 26-209 (501)
261 PRK15439 autoinducer 2 ABC tra 99.0 3.9E-10 8.5E-15 129.2 8.6 148 78-233 34-208 (510)
262 PRK13631 cbiO cobalt transport 99.0 4E-10 8.6E-15 121.0 8.0 156 77-234 48-245 (320)
263 PRK14250 phosphate ABC transpo 99.0 3.8E-10 8.2E-15 116.6 7.5 149 78-233 26-200 (241)
264 PRK13643 cbiO cobalt transport 99.0 2.2E-10 4.9E-15 121.4 5.9 154 78-233 29-212 (288)
265 PRK13636 cbiO cobalt transport 99.0 3.6E-10 7.7E-15 119.6 7.4 150 77-233 28-210 (283)
266 PRK13652 cbiO cobalt transport 99.0 4.2E-10 9.1E-15 118.7 7.8 149 78-233 27-206 (277)
267 PRK10253 iron-enterobactin tra 99.0 3.7E-10 8E-15 118.3 7.3 150 77-233 29-212 (265)
268 PRK13548 hmuV hemin importer A 99.0 4.7E-10 1E-14 117.0 8.1 150 77-233 24-209 (258)
269 cd03263 ABC_subfamily_A The AB 99.0 3.4E-10 7.4E-15 115.2 6.8 147 78-233 25-200 (220)
270 PRK13640 cbiO cobalt transport 99.0 4.4E-10 9.6E-15 118.8 7.8 146 77-229 29-207 (282)
271 cd03228 ABCC_MRP_Like The MRP 99.0 4E-10 8.7E-15 110.0 6.9 59 167-228 97-157 (171)
272 PRK09473 oppD oligopeptide tra 99.0 4.8E-10 1E-14 120.9 8.2 154 77-234 38-231 (330)
273 PRK11022 dppD dipeptide transp 99.0 5.2E-10 1.1E-14 120.5 8.3 154 77-234 29-223 (326)
274 TIGR03410 urea_trans_UrtE urea 99.0 3.4E-10 7.3E-15 116.0 6.6 149 78-227 23-193 (230)
275 PRK09700 D-allose transporter 99.0 4.7E-10 1E-14 128.7 8.4 154 78-233 28-213 (510)
276 PRK13641 cbiO cobalt transport 99.0 4.9E-10 1.1E-14 118.8 7.9 150 78-234 30-214 (287)
277 PRK13639 cbiO cobalt transport 99.0 5.7E-10 1.2E-14 117.5 8.2 149 77-233 24-205 (275)
278 cd03264 ABC_drug_resistance_li 99.0 3.8E-10 8.2E-15 114.1 6.4 146 78-233 23-197 (211)
279 cd03216 ABC_Carb_Monos_I This 99.0 7.8E-10 1.7E-14 107.1 8.3 125 78-233 23-150 (163)
280 cd03300 ABC_PotA_N PotA is an 99.0 7E-10 1.5E-14 113.9 8.4 149 78-233 23-199 (232)
281 PRK13648 cbiO cobalt transport 99.0 6.7E-10 1.4E-14 116.7 8.3 144 78-228 32-205 (269)
282 PRK11231 fecE iron-dicitrate t 99.0 4.3E-10 9.3E-15 117.2 6.6 154 78-233 25-206 (255)
283 cd03299 ABC_ModC_like Archeal 99.0 6.6E-10 1.4E-14 114.3 7.9 148 78-232 22-197 (235)
284 PRK13541 cytochrome c biogenes 99.0 6.1E-10 1.3E-14 111.2 7.4 147 78-227 23-184 (195)
285 cd03217 ABC_FeS_Assembly ABC-t 99.0 9.8E-10 2.1E-14 110.1 8.8 61 165-227 103-165 (200)
286 TIGR03771 anch_rpt_ABC anchore 99.0 8.6E-10 1.9E-14 112.5 8.5 146 78-233 3-181 (223)
287 PRK12326 preprotein translocas 99.0 1.8E-08 3.9E-13 115.0 19.8 122 261-420 411-548 (764)
288 TIGR03873 F420-0_ABC_ATP propo 99.0 6.5E-10 1.4E-14 115.9 7.3 154 78-233 24-205 (256)
289 PRK03695 vitamin B12-transport 99.0 7.6E-10 1.6E-14 114.8 7.7 148 78-233 19-201 (248)
290 TIGR00968 3a0106s01 sulfate AB 99.0 9.2E-10 2E-14 113.4 8.2 155 78-233 23-199 (237)
291 cd03267 ABC_NatA_like Similar 99.0 8.2E-10 1.8E-14 113.7 7.7 156 77-233 43-222 (236)
292 PRK10982 galactose/methyl gala 99.0 8.5E-10 1.8E-14 126.0 8.6 149 77-233 20-202 (491)
293 COG3845 ABC-type uncharacteriz 99.0 6.3E-10 1.4E-14 120.5 6.9 149 77-233 26-208 (501)
294 PRK13638 cbiO cobalt transport 99.0 8.7E-10 1.9E-14 115.9 7.9 148 78-233 24-204 (271)
295 PRK15112 antimicrobial peptide 99.0 8.6E-10 1.9E-14 115.7 7.7 144 78-227 36-211 (267)
296 PRK13645 cbiO cobalt transport 99.0 6.1E-10 1.3E-14 118.2 6.6 156 77-233 33-219 (289)
297 PRK09544 znuC high-affinity zi 99.0 1.4E-09 3.1E-14 112.9 9.1 147 78-233 27-189 (251)
298 COG1198 PriA Primosomal protei 99.0 2.4E-08 5.2E-13 115.7 19.9 303 64-414 196-598 (730)
299 PRK10261 glutathione transport 99.0 6.5E-10 1.4E-14 130.2 7.3 151 77-233 346-532 (623)
300 PRK13649 cbiO cobalt transport 99.0 6.2E-10 1.4E-14 117.6 6.4 149 78-233 30-213 (280)
301 TIGR02562 cas3_yersinia CRISPR 99.0 5E-08 1.1E-12 115.0 22.6 105 282-410 759-882 (1110)
302 PRK13549 xylose transporter AT 99.0 8.9E-10 1.9E-14 126.2 8.2 149 77-233 27-211 (506)
303 smart00487 DEXDc DEAD-like hel 99.0 7.5E-09 1.6E-13 102.0 13.7 168 62-236 4-182 (201)
304 TIGR02323 CP_lyasePhnK phospho 99.0 1.1E-09 2.4E-14 114.0 7.9 145 77-227 25-210 (253)
305 COG4181 Predicted ABC-type tra 99.0 1.4E-09 3E-14 102.0 7.6 146 77-229 32-210 (228)
306 COG1119 ModF ABC-type molybden 99.0 2.1E-09 4.6E-14 107.1 9.3 67 161-227 166-234 (257)
307 COG1123 ATPase components of v 99.0 9.2E-10 2E-14 122.4 7.3 152 77-234 313-499 (539)
308 PRK15056 manganese/iron transp 99.0 7.4E-10 1.6E-14 116.5 6.3 71 161-233 137-210 (272)
309 TIGR01978 sufC FeS assembly AT 99.0 1.1E-09 2.4E-14 113.2 7.5 150 77-228 22-206 (243)
310 cd03222 ABC_RNaseL_inhibitor T 99.0 3.8E-09 8.3E-14 103.3 10.7 117 77-233 21-140 (177)
311 COG0410 LivF ABC-type branched 99.0 1.1E-09 2.4E-14 108.3 6.7 157 77-235 25-207 (237)
312 cd03245 ABCC_bacteriocin_expor 98.9 4.5E-10 9.7E-15 114.3 4.1 148 77-228 26-201 (220)
313 COG4096 HsdR Type I site-speci 98.9 6.5E-08 1.4E-12 110.4 21.5 144 279-452 426-580 (875)
314 TIGR01187 potA spermidine/putr 98.9 9.7E-10 2.1E-14 118.4 6.7 141 86-233 1-169 (325)
315 cd03214 ABC_Iron-Siderophores_ 98.9 2.7E-09 5.8E-14 105.1 9.3 141 78-233 22-166 (180)
316 PRK11288 araG L-arabinose tran 98.9 1.4E-09 3.1E-14 124.4 8.4 143 77-227 26-201 (501)
317 PRK11701 phnK phosphonate C-P 98.9 1.8E-09 3.8E-14 112.8 8.1 151 78-234 29-221 (258)
318 COG1129 MglA ABC-type sugar tr 98.9 1.5E-09 3.3E-14 119.9 7.8 150 77-234 30-214 (500)
319 cd03260 ABC_PstB_phosphate_tra 98.9 3.1E-09 6.8E-14 108.7 9.6 147 77-227 22-201 (227)
320 PRK10419 nikE nickel transport 98.9 1.9E-09 4.1E-14 113.2 8.1 151 77-233 34-220 (268)
321 cd03254 ABCC_Glucan_exporter_l 98.9 1.1E-09 2.5E-14 112.0 6.3 148 77-228 25-200 (229)
322 COG4608 AppF ABC-type oligopep 98.9 8.7E-10 1.9E-14 112.0 5.3 136 77-228 35-172 (268)
323 PRK14247 phosphate ABC transpo 98.9 3.4E-09 7.3E-14 110.1 9.8 147 77-228 25-207 (250)
324 COG4148 ModC ABC-type molybdat 98.9 4.8E-10 1E-14 112.9 3.3 155 80-235 23-199 (352)
325 TIGR02324 CP_lyasePhnL phospho 98.9 1.6E-09 3.5E-14 110.6 7.1 155 77-233 30-217 (224)
326 PRK10261 glutathione transport 98.9 1.8E-09 3.9E-14 126.5 8.4 154 77-234 38-238 (623)
327 cd03369 ABCC_NFT1 Domain 2 of 98.9 1.1E-09 2.5E-14 110.2 5.7 141 77-228 30-186 (207)
328 cd03252 ABCC_Hemolysin The ABC 98.9 8.2E-10 1.8E-14 113.7 4.7 147 78-228 25-199 (237)
329 PRK11288 araG L-arabinose tran 98.9 1.5E-09 3.3E-14 124.2 7.4 155 77-233 275-464 (501)
330 cd03248 ABCC_TAP TAP, the Tran 98.9 1.6E-09 3.5E-14 110.7 6.8 148 77-228 36-211 (226)
331 PRK10762 D-ribose transporter 98.9 1.9E-09 4.1E-14 123.4 7.9 150 77-233 274-463 (501)
332 PRK09700 D-allose transporter 98.9 2E-09 4.3E-14 123.5 8.0 155 77-233 285-477 (510)
333 PRK14242 phosphate transporter 98.9 3.9E-09 8.4E-14 109.8 9.2 151 77-233 28-216 (253)
334 PRK13409 putative ATPase RIL; 98.9 4.1E-09 8.8E-14 122.1 10.2 147 78-233 362-522 (590)
335 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.9 1.2E-09 2.7E-14 112.5 5.2 147 78-228 26-200 (238)
336 cd03290 ABCC_SUR1_N The SUR do 98.9 2.6E-09 5.7E-14 108.5 7.6 149 77-228 23-204 (218)
337 PRK14259 phosphate ABC transpo 98.9 4.1E-09 8.9E-14 110.7 9.2 152 77-234 35-222 (269)
338 TIGR03269 met_CoM_red_A2 methy 98.9 2.5E-09 5.4E-14 123.0 8.2 155 77-233 306-496 (520)
339 PRK15134 microcin C ABC transp 98.9 1.8E-09 3.9E-14 124.4 7.0 156 77-233 308-494 (529)
340 PRK14265 phosphate ABC transpo 98.9 4E-09 8.6E-14 111.1 9.0 151 77-233 42-228 (274)
341 COG4598 HisP ABC-type histidin 98.9 1.1E-09 2.5E-14 103.2 4.2 142 78-227 29-213 (256)
342 CHL00131 ycf16 sulfate ABC tra 98.9 3.5E-09 7.6E-14 110.1 8.4 65 162-228 146-213 (252)
343 PRK10418 nikD nickel transport 98.9 3.9E-09 8.5E-14 109.9 8.7 152 77-233 25-209 (254)
344 TIGR00972 3a0107s01c2 phosphat 98.9 3.7E-09 8E-14 109.6 8.4 150 78-233 24-211 (247)
345 cd03251 ABCC_MsbA MsbA is an e 98.9 1.4E-09 3.1E-14 111.7 5.1 147 78-228 25-199 (234)
346 TIGR03269 met_CoM_red_A2 methy 98.9 5.4E-09 1.2E-13 120.3 10.4 72 161-233 163-237 (520)
347 COG2274 SunT ABC-type bacterio 98.9 2.2E-09 4.7E-14 125.4 7.1 152 77-232 495-674 (709)
348 COG1101 PhnK ABC-type uncharac 98.9 1.7E-09 3.6E-14 105.3 5.0 163 65-228 12-211 (263)
349 TIGR02770 nickel_nikD nickel i 98.9 2.9E-09 6.4E-14 109.1 7.2 145 78-227 9-187 (230)
350 PRK14268 phosphate ABC transpo 98.9 4.3E-09 9.3E-14 109.8 8.4 150 78-233 35-221 (258)
351 PRK14273 phosphate ABC transpo 98.9 4.1E-09 8.8E-14 109.8 8.1 151 77-233 29-217 (254)
352 PRK13547 hmuV hemin importer A 98.9 5.1E-09 1.1E-13 110.0 8.8 149 78-227 24-216 (272)
353 COG4172 ABC-type uncharacteriz 98.9 4.1E-09 8.8E-14 111.1 8.0 155 77-235 32-228 (534)
354 PRK10938 putative molybdenum t 98.9 2.1E-09 4.6E-14 122.7 6.4 70 161-232 130-202 (490)
355 PRK14258 phosphate ABC transpo 98.9 3.4E-09 7.3E-14 110.8 7.4 152 78-233 30-219 (261)
356 PRK14262 phosphate ABC transpo 98.9 5.4E-09 1.2E-13 108.6 8.7 151 77-233 25-213 (250)
357 cd03253 ABCC_ATM1_transporter 98.9 2.8E-09 6E-14 109.7 6.5 147 78-228 24-198 (236)
358 COG4152 ABC-type uncharacteriz 98.9 4.3E-09 9.3E-14 104.3 7.3 155 78-235 25-200 (300)
359 PRK14267 phosphate ABC transpo 98.9 5E-09 1.1E-13 109.0 8.4 152 77-233 26-216 (253)
360 PRK14269 phosphate ABC transpo 98.9 2.6E-09 5.7E-14 110.7 6.0 150 78-233 25-209 (246)
361 TIGR02633 xylG D-xylose ABC tr 98.9 3.1E-09 6.8E-14 121.6 7.2 155 77-233 23-209 (500)
362 PRK14241 phosphate transporter 98.9 5.1E-09 1.1E-13 109.3 8.0 151 78-233 27-215 (258)
363 PRK14239 phosphate transporter 98.9 6.1E-09 1.3E-13 108.3 8.5 150 78-233 28-215 (252)
364 PRK14245 phosphate ABC transpo 98.8 5.5E-09 1.2E-13 108.5 8.0 149 78-232 26-212 (250)
365 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.8 1E-08 2.3E-13 97.1 9.0 105 77-227 22-128 (144)
366 PRK15439 autoinducer 2 ABC tra 98.8 4.2E-09 9.2E-14 120.7 7.4 155 77-233 285-471 (510)
367 PRK14251 phosphate ABC transpo 98.8 6.4E-09 1.4E-13 108.1 8.1 150 78-233 27-214 (251)
368 cd00046 DEXDc DEAD-like helica 98.8 1.7E-08 3.6E-13 93.4 10.1 136 83-226 2-144 (144)
369 PRK10744 pstB phosphate transp 98.8 8E-09 1.7E-13 108.0 8.6 150 78-233 36-223 (260)
370 PRK11174 cysteine/glutathione 98.8 2.8E-09 6.2E-14 124.5 5.8 148 77-228 372-546 (588)
371 PRK14240 phosphate transporter 98.8 6.6E-09 1.4E-13 107.9 7.9 149 78-232 26-212 (250)
372 COG4988 CydD ABC-type transpor 98.8 4E-09 8.6E-14 117.0 6.5 149 76-228 342-517 (559)
373 TIGR01257 rim_protein retinal- 98.8 4.3E-09 9.3E-14 134.0 7.6 150 77-234 1961-2139(2272)
374 PRK14243 phosphate transporter 98.8 9E-09 1.9E-13 107.8 8.9 151 77-233 32-218 (264)
375 TIGR02633 xylG D-xylose ABC tr 98.8 4.7E-09 1E-13 120.2 7.3 156 77-234 282-472 (500)
376 PRK15134 microcin C ABC transp 98.8 4.1E-09 8.8E-14 121.5 6.8 152 77-233 31-225 (529)
377 PRK13549 xylose transporter AT 98.8 5.4E-09 1.2E-13 119.8 7.8 155 77-233 284-473 (506)
378 TIGR02868 CydC thiol reductant 98.8 3.2E-09 7E-14 122.5 5.8 145 77-225 357-528 (529)
379 KOG0058 Peptide exporter, ABC 98.8 4.1E-09 8.9E-14 119.1 6.3 154 72-229 485-666 (716)
380 PRK14248 phosphate ABC transpo 98.8 7.8E-09 1.7E-13 108.5 7.9 150 77-232 43-230 (268)
381 PRK13546 teichoic acids export 98.8 1.9E-08 4.1E-13 105.2 10.7 153 77-233 46-211 (264)
382 PRK14255 phosphate ABC transpo 98.8 1.5E-08 3.3E-13 105.3 10.0 144 78-227 28-208 (252)
383 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.8 1.5E-08 3.3E-13 103.4 9.7 148 77-233 44-210 (224)
384 cd03250 ABCC_MRP_domain1 Domai 98.8 1.3E-08 2.8E-13 102.3 9.0 148 77-228 27-190 (204)
385 COG4172 ABC-type uncharacteriz 98.8 5.8E-09 1.3E-13 110.0 6.5 152 77-234 309-496 (534)
386 PRK14260 phosphate ABC transpo 98.8 1.5E-08 3.1E-13 105.9 9.7 150 78-233 30-217 (259)
387 PRK14275 phosphate ABC transpo 98.8 7.3E-09 1.6E-13 109.7 7.5 151 77-233 61-249 (286)
388 COG4161 ArtP ABC-type arginine 98.8 5.8E-09 1.3E-13 96.7 5.8 149 78-228 25-203 (242)
389 PRK14254 phosphate ABC transpo 98.8 1.3E-08 2.9E-13 107.7 9.3 151 77-233 61-247 (285)
390 PRK11819 putative ABC transpor 98.8 1.2E-08 2.5E-13 118.3 9.5 150 77-232 29-227 (556)
391 cd03244 ABCC_MRP_domain2 Domai 98.8 3.1E-09 6.8E-14 108.2 4.3 147 78-228 27-200 (221)
392 COG4604 CeuD ABC-type enteroch 98.8 1.8E-09 3.9E-14 103.6 2.1 74 161-235 130-206 (252)
393 PRK13409 putative ATPase RIL; 98.8 6.3E-09 1.4E-13 120.5 7.1 71 160-233 206-279 (590)
394 PRK10790 putative multidrug tr 98.8 5.2E-09 1.1E-13 122.4 6.4 148 77-228 363-537 (592)
395 PRK14249 phosphate ABC transpo 98.8 6.9E-09 1.5E-13 107.9 6.6 150 78-233 27-214 (251)
396 TIGR01257 rim_protein retinal- 98.8 7.2E-09 1.6E-13 132.0 8.0 148 78-234 953-1129(2272)
397 PRK14253 phosphate ABC transpo 98.8 1E-08 2.2E-13 106.5 7.8 151 77-233 25-212 (249)
398 PRK14235 phosphate transporter 98.8 1.2E-08 2.5E-13 107.2 8.3 144 78-227 42-223 (267)
399 COG4136 ABC-type uncharacteriz 98.8 2.8E-09 6E-14 97.8 2.9 139 77-226 24-195 (213)
400 PRK14263 phosphate ABC transpo 98.8 1.6E-08 3.4E-13 105.8 9.0 150 78-233 31-216 (261)
401 PRK14256 phosphate ABC transpo 98.8 2.3E-08 5E-13 104.0 9.9 151 78-233 27-215 (252)
402 TIGR03797 NHPM_micro_ABC2 NHPM 98.8 6.4E-09 1.4E-13 123.7 6.1 146 77-228 475-647 (686)
403 PRK14257 phosphate ABC transpo 98.8 2.2E-08 4.7E-13 108.0 9.6 151 77-233 104-292 (329)
404 PRK15064 ABC transporter ATP-b 98.8 1.9E-08 4.2E-13 115.9 9.9 67 162-233 151-220 (530)
405 TIGR01842 type_I_sec_PrtD type 98.8 8.1E-09 1.8E-13 119.5 6.7 149 77-228 340-516 (544)
406 cd03289 ABCC_CFTR2 The CFTR su 98.8 6.6E-09 1.4E-13 109.1 5.3 148 77-228 26-199 (275)
407 PRK10982 galactose/methyl gala 98.8 9.8E-09 2.1E-13 117.3 7.1 72 160-233 385-459 (491)
408 TIGR03719 ABC_ABC_ChvD ATP-bin 98.8 1.8E-08 3.9E-13 116.7 9.2 145 77-227 27-219 (552)
409 cd00267 ABC_ATPase ABC (ATP-bi 98.8 1.6E-08 3.4E-13 97.3 7.1 119 78-228 22-142 (157)
410 PRK14237 phosphate transporter 98.8 2.3E-08 4.9E-13 105.0 8.9 151 77-233 42-230 (267)
411 PRK14244 phosphate ABC transpo 98.8 1.6E-08 3.6E-13 105.0 7.8 144 78-227 28-209 (251)
412 PRK14272 phosphate ABC transpo 98.7 3E-08 6.6E-13 103.1 9.8 145 78-227 27-208 (252)
413 PRK11176 lipid transporter ATP 98.7 6.1E-09 1.3E-13 121.6 5.0 148 77-228 365-541 (582)
414 PF00005 ABC_tran: ABC transpo 98.7 4.5E-09 9.8E-14 98.4 3.1 114 78-193 8-135 (137)
415 PF07652 Flavi_DEAD: Flaviviru 98.7 3.5E-08 7.5E-13 91.2 8.7 134 79-227 2-137 (148)
416 PRK10535 macrolide transporter 98.7 1.8E-08 3.9E-13 118.6 8.7 147 78-232 31-210 (648)
417 PRK14274 phosphate ABC transpo 98.7 1.7E-08 3.7E-13 105.4 7.7 150 78-233 35-222 (259)
418 PRK11160 cysteine/glutathione 98.7 1E-08 2.2E-13 119.4 6.5 148 77-228 362-536 (574)
419 PRK14238 phosphate transporter 98.7 2.5E-08 5.5E-13 104.8 8.9 153 77-233 46-234 (271)
420 PRK14270 phosphate ABC transpo 98.7 2.9E-08 6.3E-13 103.2 9.3 150 78-233 27-214 (251)
421 PRK13657 cyclic beta-1,2-gluca 98.7 7.1E-09 1.5E-13 121.1 5.1 149 77-229 357-533 (588)
422 PRK14236 phosphate transporter 98.7 3.5E-08 7.6E-13 103.8 9.8 152 78-233 48-235 (272)
423 cd03278 ABC_SMC_barmotin Barmo 98.7 4.2E-08 9E-13 98.0 9.8 134 78-229 20-179 (197)
424 PLN03211 ABC transporter G-25; 98.7 1.6E-08 3.5E-13 118.7 7.9 147 78-228 91-268 (659)
425 PRK09580 sufC cysteine desulfu 98.7 2.7E-08 5.9E-13 103.1 8.8 60 166-227 145-206 (248)
426 COG1132 MdlB ABC-type multidru 98.7 7.6E-09 1.6E-13 120.4 5.1 149 78-230 352-528 (567)
427 PRK13545 tagH teichoic acids e 98.7 3.5E-08 7.7E-13 110.3 10.0 146 77-233 46-211 (549)
428 TIGR03796 NHPM_micro_ABC1 NHPM 98.7 6.9E-09 1.5E-13 124.0 4.8 147 77-229 501-675 (710)
429 TIGR03375 type_I_sec_LssB type 98.7 1E-08 2.2E-13 122.2 6.2 149 77-229 487-663 (694)
430 PRK14271 phosphate ABC transpo 98.7 2.4E-08 5.2E-13 105.2 8.3 150 78-233 44-230 (276)
431 cd03291 ABCC_CFTR1 The CFTR su 98.7 4.4E-08 9.5E-13 103.3 10.2 145 78-228 60-221 (282)
432 TIGR00348 hsdR type I site-spe 98.7 2.2E-07 4.8E-12 109.4 17.2 102 279-410 514-638 (667)
433 PRK15177 Vi polysaccharide exp 98.7 3E-08 6.5E-13 100.4 8.6 152 78-233 10-171 (213)
434 TIGR00958 3a01208 Conjugate Tr 98.7 6.9E-09 1.5E-13 123.6 4.6 146 77-228 503-676 (711)
435 PRK14264 phosphate ABC transpo 98.7 3E-08 6.6E-13 106.0 9.0 150 78-233 68-267 (305)
436 PRK14246 phosphate ABC transpo 98.7 1.7E-08 3.6E-13 105.3 6.7 145 78-227 33-213 (257)
437 TIGR02857 CydD thiol reductant 98.7 1.1E-08 2.4E-13 118.0 5.9 148 77-228 344-519 (529)
438 cd03236 ABC_RNaseL_inhibitor_d 98.7 2.5E-08 5.4E-13 103.7 7.9 66 161-228 134-201 (255)
439 TIGR01193 bacteriocin_ABC ABC- 98.7 8.7E-09 1.9E-13 123.0 5.0 148 77-229 496-672 (708)
440 PRK14261 phosphate ABC transpo 98.7 2.8E-08 6.1E-13 103.4 8.2 150 78-233 29-216 (253)
441 TIGR00955 3a01204 The Eye Pigm 98.7 1.7E-08 3.6E-13 118.2 7.1 144 77-228 47-228 (617)
442 PRK14266 phosphate ABC transpo 98.7 2.7E-08 5.8E-13 103.4 7.7 144 78-227 26-206 (250)
443 TIGR01194 cyc_pep_trnsptr cycl 98.7 1.6E-08 3.5E-13 117.1 6.8 148 77-228 364-533 (555)
444 PRK14252 phosphate ABC transpo 98.7 4.2E-08 9E-13 102.9 9.1 150 78-233 39-228 (265)
445 PRK15064 ABC transporter ATP-b 98.7 3.5E-08 7.5E-13 113.9 9.2 145 77-233 341-503 (530)
446 TIGR02203 MsbA_lipidA lipid A 98.7 1.1E-08 2.3E-13 119.4 4.9 148 77-228 354-530 (571)
447 PRK10522 multidrug transporter 98.7 1.9E-08 4.2E-13 116.4 7.1 147 77-228 345-512 (547)
448 COG0396 sufC Cysteine desulfur 98.7 3E-08 6.5E-13 97.8 7.0 144 77-226 26-204 (251)
449 cd03288 ABCC_SUR2 The SUR doma 98.7 1.2E-08 2.6E-13 106.4 4.4 148 78-229 44-218 (257)
450 PRK10789 putative multidrug tr 98.7 1.4E-08 3.1E-13 118.0 5.6 148 77-228 337-512 (569)
451 PRK07246 bifunctional ATP-depe 98.7 9E-07 1.9E-11 106.2 20.9 135 260-415 630-780 (820)
452 TIGR00954 3a01203 Peroxysomal 98.7 5E-08 1.1E-12 115.0 10.0 149 77-232 474-645 (659)
453 PRK10938 putative molybdenum t 98.7 4.1E-08 8.8E-13 112.2 8.9 66 161-227 396-463 (490)
454 KOG0055 Multidrug/pheromone ex 98.7 1.8E-08 3.9E-13 120.4 6.1 142 77-228 375-550 (1228)
455 COG4586 ABC-type uncharacteriz 98.7 4.6E-08 1E-12 98.6 8.0 73 161-234 151-226 (325)
456 COG0488 Uup ATPase components 98.7 6.7E-08 1.4E-12 109.5 10.4 144 77-226 25-210 (530)
457 TIGR02204 MsbA_rel ABC transpo 98.7 1.4E-08 3.1E-13 118.3 4.8 148 77-228 362-537 (576)
458 KOG0949 Predicted helicase, DE 98.7 4.7E-07 1E-11 104.1 16.1 163 65-236 510-682 (1330)
459 cd03270 ABC_UvrA_I The excisio 98.7 9.1E-08 2E-12 97.8 9.7 67 160-228 131-201 (226)
460 TIGR03719 ABC_ABC_ChvD ATP-bin 98.7 6.5E-08 1.4E-12 112.0 9.6 144 77-232 344-507 (552)
461 COG4618 ArpD ABC-type protease 98.7 3.9E-08 8.5E-13 106.7 7.1 146 76-230 357-536 (580)
462 TIGR01192 chvA glucan exporter 98.7 2.3E-08 5E-13 116.5 5.9 148 77-228 357-532 (585)
463 PRK11819 putative ABC transpor 98.6 6.7E-08 1.4E-12 112.0 9.5 151 77-233 346-510 (556)
464 PLN03130 ABC transporter C fam 98.6 2.5E-08 5.4E-13 127.5 6.5 148 77-228 1261-1435(1622)
465 TIGR00957 MRP_assoc_pro multi 98.6 2.4E-08 5.3E-13 127.5 6.2 148 77-228 1308-1482(1522)
466 PRK10636 putative ABC transpor 98.6 5.4E-08 1.2E-12 114.3 8.4 140 77-227 334-488 (638)
467 KOG0057 Mitochondrial Fe/S clu 98.6 2.6E-08 5.7E-13 109.1 5.2 152 76-228 373-548 (591)
468 PLN03232 ABC transporter C fam 98.6 2.4E-08 5.2E-13 127.4 5.8 148 77-228 1258-1432(1495)
469 PTZ00243 ABC transporter; Prov 98.6 3.1E-08 6.7E-13 126.4 6.4 148 77-228 1332-1507(1560)
470 PRK11147 ABC transporter ATPas 98.6 6.8E-08 1.5E-12 113.6 8.7 145 77-227 341-498 (635)
471 COG0556 UvrB Helicase subunit 98.6 4E-07 8.6E-12 99.1 13.7 165 217-417 387-555 (663)
472 COG4178 ABC-type uncharacteriz 98.6 6.4E-08 1.4E-12 109.2 8.1 154 78-234 416-582 (604)
473 PTZ00265 multidrug resistance 98.6 3.1E-08 6.8E-13 125.4 6.1 65 163-228 576-642 (1466)
474 TIGR01846 type_I_sec_HlyB type 98.6 2.9E-08 6.4E-13 118.2 5.2 148 77-228 479-654 (694)
475 PLN03140 ABC transporter G fam 98.6 8.9E-08 1.9E-12 120.9 9.4 145 77-229 902-1082(1470)
476 PRK11147 ABC transporter ATPas 98.6 1.2E-07 2.7E-12 111.4 9.9 62 161-227 151-214 (635)
477 TIGR01271 CFTR_protein cystic 98.6 5E-08 1.1E-12 124.4 6.8 148 77-228 1241-1414(1490)
478 KOG0055 Multidrug/pheromone ex 98.6 7.7E-08 1.7E-12 115.1 6.9 141 77-228 1012-1187(1228)
479 TIGR00956 3a01205 Pleiotropic 98.6 1E-07 2.2E-12 120.6 8.3 145 77-230 785-966 (1394)
480 PTZ00265 multidrug resistance 98.5 5.2E-08 1.1E-12 123.5 5.3 64 165-229 1357-1422(1466)
481 PRK10636 putative ABC transpor 98.5 2.4E-07 5.2E-12 108.9 10.2 62 161-227 144-207 (638)
482 COG4107 PhnK ABC-type phosphon 98.5 1.2E-06 2.7E-11 82.5 12.7 105 161-270 146-255 (258)
483 COG4674 Uncharacterized ABC-ty 98.5 9.1E-08 2E-12 91.9 4.9 155 77-234 27-215 (249)
484 COG4167 SapF ABC-type antimicr 98.5 2.3E-07 5E-12 88.0 7.1 145 77-227 35-211 (267)
485 COG1134 TagH ABC-type polysacc 98.5 2E-07 4.4E-12 93.2 7.0 72 161-234 142-216 (249)
486 PLN03073 ABC transporter F fam 98.5 3.4E-07 7.3E-12 108.3 9.8 138 77-227 531-685 (718)
487 cd03240 ABC_Rad50 The catalyti 98.5 2.1E-07 4.6E-12 93.5 6.9 67 161-228 110-185 (204)
488 COG4619 ABC-type uncharacteriz 98.5 3.8E-08 8.1E-13 92.2 0.8 67 161-228 128-196 (223)
489 COG4987 CydC ABC-type transpor 98.5 1.6E-07 3.4E-12 103.1 5.2 147 77-227 360-534 (573)
490 PLN03232 ABC transporter C fam 98.4 4.2E-07 9E-12 116.2 9.6 148 77-228 639-802 (1495)
491 PLN03140 ABC transporter G fam 98.4 2.4E-07 5.3E-12 117.0 7.3 64 162-226 332-397 (1470)
492 COG0488 Uup ATPase components 98.4 5.1E-07 1.1E-11 102.4 9.1 143 77-226 344-496 (530)
493 PLN03130 ABC transporter C fam 98.4 4.8E-07 1E-11 115.9 9.7 148 77-228 639-802 (1622)
494 CHL00122 secA preprotein trans 98.4 1.1E-05 2.5E-10 94.3 19.6 81 262-362 409-491 (870)
495 KOG0061 Transporter, ABC super 98.4 4.1E-07 9E-12 105.8 7.6 147 77-231 52-235 (613)
496 PF04851 ResIII: Type III rest 98.4 1.1E-06 2.3E-11 86.1 9.4 145 66-226 3-182 (184)
497 COG4559 ABC-type hemin transpo 98.4 4.1E-07 8.9E-12 88.7 6.2 155 78-234 24-210 (259)
498 TIGR00957 MRP_assoc_pro multi 98.4 7.1E-07 1.5E-11 114.3 10.1 149 78-228 661-824 (1522)
499 PLN03073 ABC transporter F fam 98.4 6.4E-07 1.4E-11 106.0 8.4 62 161-227 339-402 (718)
500 TIGR00956 3a01205 Pleiotropic 98.4 4.2E-07 9.1E-12 115.1 7.3 148 77-226 83-270 (1394)
No 1
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-150 Score=1167.68 Aligned_cols=661 Identities=81% Similarity=1.287 Sum_probs=640.3
Q ss_pred cCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEc
Q 004850 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (727)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t 122 (727)
+|+|++++++++|.+++++|..||+|.++.+++..+.+++.++++|+||||||||+||+.++.. ... ...+.||
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~-~~~-----~~~v~CT 97 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYE-LSH-----LTGVACT 97 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHH-Hhh-----ccceeec
Confidence 8999999999999999999999999999999999999999999999999999999999998765 222 1358999
Q ss_pred ccchhhhccHHHHHHHhccccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHH
Q 004850 123 QPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDV 202 (727)
Q Consensus 123 ~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ 202 (727)
||+++++++|+.|+++++...+|..|||.++|+++.+.+|.+.|||+|+++|.++.++++..+++|||||||||++.+|.
T Consensus 98 Qprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDi 177 (699)
T KOG0925|consen 98 QPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDI 177 (699)
T ss_pred CchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCcccHHHHHhhhcCCCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCE
Q 004850 203 LFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDI 282 (727)
Q Consensus 203 ll~ll~~l~~~~~~~~vil~SATl~~~~~~~~f~~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~i 282 (727)
+++++|++...+|++++|+||||+++.+|..||+++|++.||| .|||+++|.+.+.+||+++++.++++||..+.+|+|
T Consensus 178 LmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDi 256 (699)
T KOG0925|consen 178 LMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDI 256 (699)
T ss_pred HHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCE
Confidence 9999999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccC
Q 004850 283 LVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID 362 (727)
Q Consensus 283 LVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp 362 (727)
||||+|.+||+.+|+.+......++.+.+.++++||| +.+|+++|++.+ .+.++...|||+|+||+||+|+||+
T Consensus 257 lvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p--~~~~~~~~RkvVvstniaetsltid 330 (699)
T KOG0925|consen 257 LVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAP--EKRNGAYGRKVVVSTNIAETSLTID 330 (699)
T ss_pred EEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCC--cccCCCccceEEEEecchheeeeec
Confidence 9999999999999999998888888888899999999 788899999988 3455667899999999999999999
Q ss_pred CeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCCCceEEEecchhhhcccCCCCCCCcccccCchhhH
Q 004850 363 GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTV 442 (727)
Q Consensus 363 ~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~~~~~~~l~~~~~pei~r~~l~~~~ 442 (727)
+|.||||.|+.|+++|||+.+.++|...|||++++.||+|||||++||+||||||++.|..+|.+.+.|||+|++|.+++
T Consensus 331 giv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~V 410 (699)
T KOG0925|consen 331 GIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTV 410 (699)
T ss_pred cEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCcccccCCCCCcHHHHHHHHHHHHHcCCcCCCCCcchhhhhhccCCCChhhhhHHhhcCCCCChHHHHHHH
Q 004850 443 LTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSIS 522 (727)
Q Consensus 443 L~lk~~~~~~~~~~~~~~~P~~~~i~~a~~~L~~lgald~~~~lT~lG~~l~~lPl~p~~~k~ll~~~~~~c~~~~l~i~ 522 (727)
|+||.+||+++.+|+|+|||.|+++.+|++.|..++|+|+||+||++|..|++||+||+++|||+.++.|.|.+|+++|+
T Consensus 411 L~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsis 490 (699)
T KOG0925|consen 411 LQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSIS 490 (699)
T ss_pred HHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCch-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCchhhHHhhcCChHHHHHHHHHHHHHHHHHHH
Q 004850 523 AMLSVPNCFVRPR-EAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMAR 601 (727)
Q Consensus 523 a~ls~~~~f~~~~-~~~~~~~~~~~~~~~~~sD~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~ql~~~l~~ 601 (727)
||||+++.|.+|. +.++.++.++..|+|.+|||+|++|+|.+|+++....+||+.||||+++|..|.++|.||.++|.+
T Consensus 491 AMLsvPncFvRp~~~a~kaAdeak~~faH~dGDHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R 570 (699)
T KOG0925|consen 491 AMLSVPNCFVRPTSSASKAADEAKETFAHIDGDHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDR 570 (699)
T ss_pred hcccCCccccCCChhHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999998 788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCCCCcchHHHHHHHHHHhcccceEEEcCCCcEEEeecCceEEECCCCCCCCCCcEEEEeeeccchhhhcccc
Q 004850 602 FNLKLCSNDFNSRDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTV 681 (727)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~i~~~l~~g~~~nva~~~~~~~y~~~~~~~~~~ihpsS~l~~~~~~vvy~e~~~t~~~~~~~~ 681 (727)
++++..+.++.+.++..+|+|||++|||++||+...+|.|.|+.+++.|++|||+++..+|+||+|+|.+.|+++|+|.|
T Consensus 571 ~~L~~~st~F~S~~y~~nirKALvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhps~~l~~~PeWVlyneFvlt~~N~ir~v 650 (699)
T KOG0925|consen 571 FNLPLCSTDFGSRDYYVNIRKALVSGYFMQVAHLERGGHYLTVKDNQVVQLHPSTCLDHKPEWVLYNEFVLTTKNFIRTV 650 (699)
T ss_pred hcCcccCCCCCChhHHHHHHHHHHHHHHHHHHhhccCCceEEEecCceEEeccccccCCCCCeEEEeeEEeeccceeeee
Confidence 99999999998888899999999999999999998888999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHhhcCcccccccCCcchHHHHHHHHHH
Q 004850 682 TDVRGEWLIDIAPHYYDLSNFPQCEAKRVLERLYR 716 (727)
Q Consensus 682 t~i~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (727)
|.|.|+||.+++|+||++++|+++|+|++|+++.-
T Consensus 651 t~I~pewlv~laP~YydlsNfp~~e~k~~L~~~~~ 685 (699)
T KOG0925|consen 651 TDIRPEWLVELAPQYYDLSNFPPSEAKRALEQLYK 685 (699)
T ss_pred cccCHHHHHHhchhhcccccCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999997543
No 2
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-146 Score=1192.77 Aligned_cols=626 Identities=54% Similarity=0.953 Sum_probs=598.8
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHH
Q 004850 55 YYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSR 134 (727)
Q Consensus 55 ~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~ 134 (727)
..++.+.|..||+++.+.+|+.++.++++++|+|+||||||||+||++++.+ +.. .+. |.||||||++++++|+
T Consensus 40 ~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG-~~~----~g~-I~~TQPRRVAavslA~ 113 (674)
T KOG0922|consen 40 NLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAG-FAS----SGK-IACTQPRRVAAVSLAK 113 (674)
T ss_pred ccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcc-ccc----CCc-EEeecCchHHHHHHHH
Confidence 3456677899999999999999999999999999999999999999999887 543 244 9999999999999999
Q ss_pred HHHHhccccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhC
Q 004850 135 RVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR 214 (727)
Q Consensus 135 ~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~ 214 (727)
||+++++..+|+.|||.+||++..+.+|+|+|+|+|+|+|+++.+++|++|++|||||||||++.+|.++++||++++++
T Consensus 114 RVAeE~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R 193 (674)
T KOG0922|consen 114 RVAEEMGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKR 193 (674)
T ss_pred HHHHHhCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEcCcccHHHHHhhhcCCCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHH
Q 004850 215 PDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIED 294 (727)
Q Consensus 215 ~~~~vil~SATl~~~~~~~~f~~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~ 294 (727)
+++++|+||||+|+++|++||.++|++.++||.|||+++|...+..||+++++.++.+||.++++|+|||||+|++||+.
T Consensus 194 ~~LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~ 273 (674)
T KOG0922|consen 194 PDLKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEA 273 (674)
T ss_pred CCceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCcc
Q 004850 295 ACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAK 374 (727)
Q Consensus 295 l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k 374 (727)
+++.|.+....+..+.+. .++|+||+|+.++|.++|.+.+.| .||||+||||||||||||||.||||+|++|
T Consensus 274 ~~~~l~e~~~~~~~~~~~-~~lply~aL~~e~Q~rvF~p~p~g-------~RKvIlsTNIAETSlTI~GI~YVVDsG~vK 345 (674)
T KOG0922|consen 274 ACELLRERAKSLPEDCPE-LILPLYGALPSEEQSRVFDPAPPG-------KRKVILSTNIAETSLTIDGIRYVVDSGFVK 345 (674)
T ss_pred HHHHHHHHhhhccccCcc-eeeeecccCCHHHhhccccCCCCC-------cceEEEEcceeeeeEEecceEEEEcCCceE
Confidence 999999987766665554 799999999999999999999999 999999999999999999999999999999
Q ss_pred ceeeccccCccccccccccHhhHHhhhcccCCCCCceEEEecchhhhcccCCCCCCCcccccCchhhHHHHHHcCCCCcc
Q 004850 375 QKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLV 454 (727)
Q Consensus 375 ~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~~~~~~~l~~~~~pei~r~~l~~~~L~lk~~~~~~~~ 454 (727)
++.|||.+|++.|.++|+|++++.||+|||||++||+|||||++++|+. |++.++|||+|++|+.++|+||++|++|+.
T Consensus 346 ~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~-~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l 424 (674)
T KOG0922|consen 346 QKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDK-MPLQTVPEIQRVNLSSAVLQLKALGINDPL 424 (674)
T ss_pred EEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhh-cccCCCCceeeechHHHHHHHHhcCCCCcc
Confidence 9999999999999999999999999999999999999999999999965 999999999999999999999999999999
Q ss_pred cccCCCCCcHHHHHHHHHHHHHcCCcCCCCCcch-hhhhhccCCCChhhhhHHhhcCCCCChHHHHHHHHHhcCCCCCCC
Q 004850 455 HFDFMDPPAPETLMRALEVLNYLGALDDDGNLTE-MGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVR 533 (727)
Q Consensus 455 ~~~~~~~P~~~~i~~a~~~L~~lgald~~~~lT~-lG~~l~~lPl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~ 533 (727)
.|+|+|||+++++..|++.|+.+||||++|.||. +|+.|+.||++|.++|||+.|..+||++|+++|+||||+.++|.+
T Consensus 425 ~F~f~d~P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~ 504 (674)
T KOG0922|consen 425 RFPFIDPPPPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSR 504 (674)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceecC
Confidence 9999999999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred chHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCchhhHHhhcCChHHHHHHHHHHHHHHHHHHHcCCcccCCCCC
Q 004850 534 PREAQKA-ADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFN 612 (727)
Q Consensus 534 ~~~~~~~-~~~~~~~~~~~~sD~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~ql~~~l~~~~~~~~~~~~~ 612 (727)
|.+.+.+ ++..+.+|.+.+|||+|+|++|+.|..++...+||++||||++.|+.+.++|+||.+++.+.+++..++..
T Consensus 505 p~~~~~~~a~~~~~kf~~~eGDh~tlL~vy~~~~~~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s~~~- 583 (674)
T KOG0922|consen 505 PKDKKAEDADRKRAKFANPEGDHLTLLNVYESWKENGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSSCGG- 583 (674)
T ss_pred ccchhhhhhhHHHHhhcCcccCHHHHHHHHHHHHhcCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccCCCC-
Confidence 9887776 88999999999999999999999999999999999999999999999999999999999999988865543
Q ss_pred CcchHHHHHHHHHHhcccceEEEc-CCCcEEEeecCceEEECCCCCC-CCCCcEEEEeeeccchhhhcccccccCHHHHH
Q 004850 613 SRDYYVNIRKAMLAGYFMQVAHLE-RTGQYLTVKDNQVVHLHPSNCL-DHKPEWVIYNEYVLTSRNFIRTVTDVRGEWLI 690 (727)
Q Consensus 613 ~~~~~~~i~~~l~~g~~~nva~~~-~~~~y~~~~~~~~~~ihpsS~l-~~~~~~vvy~e~~~t~~~~~~~~t~i~~~wl~ 690 (727)
+.+.|++|||+|||.|+|+++ ++| |+|+.+|+.|+|||||++ ..+|+||||+|++.|+|.|||+||.|+++||.
T Consensus 584 ---d~~~i~k~l~aGff~N~A~~~~~~~-Yrti~~~~~v~IHPSS~l~~~~p~~viy~el~~Ttk~Y~r~Vt~i~~~wL~ 659 (674)
T KOG0922|consen 584 ---DMEKIRKCLCAGFFRNVAERDYQDG-YRTIRGGQPVYIHPSSVLFRRKPEWVIYHELLQTTKEYMRNVTAIDPEWLL 659 (674)
T ss_pred ---CHHHHHHHHHHHHHHHHHHhhcCCC-eEEccCCcEEEEechHHhhcCCCCEEEEEEEeecchHhHhheeecCHHHHH
Confidence 468899999999999999997 556 999999999999999999 45689999999999999999999999999999
Q ss_pred hhcCcccccc
Q 004850 691 DIAPHYYDLS 700 (727)
Q Consensus 691 ~~~~~~~~~~ 700 (727)
+++|++|+..
T Consensus 660 e~ap~~~~~~ 669 (674)
T KOG0922|consen 660 ELAPHFFKQS 669 (674)
T ss_pred HhCchHhhcc
Confidence 9999997554
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-144 Score=1154.19 Aligned_cols=626 Identities=50% Similarity=0.892 Sum_probs=603.2
Q ss_pred HHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHH
Q 004850 58 ILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVA 137 (727)
Q Consensus 58 ~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (727)
+.+++.+||++..+.+++..|.++++|+|+|+||||||||++|++++.+ +.. .-.|.||||||++|++||++|+
T Consensus 348 i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edG-Y~~-----~GmIGcTQPRRvAAiSVAkrVa 421 (1042)
T KOG0924|consen 348 IREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDG-YAD-----NGMIGCTQPRRVAAISVAKRVA 421 (1042)
T ss_pred HHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcc-ccc-----CCeeeecCchHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999877 544 2369999999999999999999
Q ss_pred HhccccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCC
Q 004850 138 EEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDL 217 (727)
Q Consensus 138 ~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~ 217 (727)
++++..+|..|||.+||++..+.++.|.|+|+|.|+|..+.+..|.+|++||+||||||++++|.++++++.++++|.++
T Consensus 422 ~EM~~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdl 501 (1042)
T KOG0924|consen 422 EEMGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDL 501 (1042)
T ss_pred HHhCCccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCcccHHHHHhhhcCCCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHH
Q 004850 218 KLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACR 297 (727)
Q Consensus 218 ~vil~SATl~~~~~~~~f~~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~ 297 (727)
++|++||||++++|++||++||.+.+|||+|||++.|...|..||+++++...++||...++|+||||++|+++|+..+.
T Consensus 502 KliVtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~ 581 (1042)
T KOG0924|consen 502 KLIVTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCD 581 (1042)
T ss_pred eEEEeeccccHHHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCC-CCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccce
Q 004850 298 KITKEITNMGDQ-VGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQK 376 (727)
Q Consensus 298 ~L~~~~~~~~~~-~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~ 376 (727)
.+...+.++... ..++.|+|+|+.||++.|.++|++.+.| .|||||||||||||||||||.||||+|++|.+
T Consensus 582 ~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~-------vRK~IvATNIAETSLTi~gI~yVID~Gy~K~k 654 (1042)
T KOG0924|consen 582 IIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGG-------VRKCIVATNIAETSLTIPGIRYVIDTGYCKLK 654 (1042)
T ss_pred HHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCC-------ceeEEEeccchhhceeecceEEEEecCceeee
Confidence 998877655322 2379999999999999999999999999 99999999999999999999999999999999
Q ss_pred eeccccCccccccccccHhhHHhhhcccCCCCCceEEEecchhhhcccCCCCCCCcccccCchhhHHHHHHcCCCCcccc
Q 004850 377 VYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF 456 (727)
Q Consensus 377 ~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~~~~~~~l~~~~~pei~r~~l~~~~L~lk~~~~~~~~~~ 456 (727)
+|+|..|++.|.++|||++++.||+|||||++||.||||||+..|.++|-+.++|||+|++|.+++|.||++|++++..|
T Consensus 655 vyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~F 734 (1042)
T KOG0924|consen 655 VYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKF 734 (1042)
T ss_pred ecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCcCCCCCcchhhhhhccCCCChhhhhHHhhcCCCCChHHHHHHHHHhcCCCCCCCchH
Q 004850 457 DFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPRE 536 (727)
Q Consensus 457 ~~~~~P~~~~i~~a~~~L~~lgald~~~~lT~lG~~l~~lPl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~~~~ 536 (727)
+|+|||+.+.+.+|+-.|+.|||||..|.||++|+.|++|||||.++||||.|+.+||.+|+++|++|||+..+|++|.+
T Consensus 735 dFmD~Pped~~~~sly~Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpke 814 (1042)
T KOG0924|consen 735 DFMDPPPEDNLLNSLYQLWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKE 814 (1042)
T ss_pred CcCCCCHHHHHHHHHHHHHHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCchhhHHhhcCChHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCcch
Q 004850 537 AQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNSRDY 616 (727)
Q Consensus 537 ~~~~~~~~~~~~~~~~sD~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~ql~~~l~~~~~~~~~~~~~~~~~ 616 (727)
..++++.++.+|..++|||||+||+|++|++++....||.+|+|+.++|+.|+++|.||+.+|+.+++++.|+ .+
T Consensus 815 r~eead~ar~Kf~~~~sDhLTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~-----~d 889 (1042)
T KOG0924|consen 815 REEEADAAREKFQVPESDHLTLLNVFNQWRKNKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISS-----DD 889 (1042)
T ss_pred chhhhhhHHhhhcCCCCchhhHHHHHHHHHhcCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccC-----ch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998765 37
Q ss_pred HHHHHHHHHHhcccceEEEcCCCcEEEeecCceEEECCCCCCC--CCCcEEEEeeeccchhhhcccccccCHHHHHhhcC
Q 004850 617 YVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLD--HKPEWVIYNEYVLTSRNFIRTVTDVRGEWLIDIAP 694 (727)
Q Consensus 617 ~~~i~~~l~~g~~~nva~~~~~~~y~~~~~~~~~~ihpsS~l~--~~~~~vvy~e~~~t~~~~~~~~t~i~~~wl~~~~~ 694 (727)
|+.|++|||+|||.|+|++.+.|.|.++++|..+++||+|+|. ..|+||||||++.|++.||++||.|+|+||.+++|
T Consensus 890 wdivrKCIcs~~fhn~Arlkg~g~YV~~~tg~~c~lHPsS~L~g~y~p~Yivyhel~~T~keym~cvT~v~~~wl~E~gp 969 (1042)
T KOG0924|consen 890 WDIVRKCICSAYFHNAARLKGIGEYVNLSTGIPCHLHPSSVLHGLYTPDYIVYHELLMTTKEYMQCVTSVSPEWLAELGP 969 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHhccCceEEEccCCcceeecchHhhhcCCCCCeeeehHHHHhHHHHHHHHhhCCHHHHHHhCc
Confidence 9999999999999999999999999999999999999999993 36999999999999999999999999999999999
Q ss_pred ccccccc
Q 004850 695 HYYDLSN 701 (727)
Q Consensus 695 ~~~~~~~ 701 (727)
-||+..+
T Consensus 970 ~~y~ik~ 976 (1042)
T KOG0924|consen 970 MFYSIKE 976 (1042)
T ss_pred eeEeccc
Confidence 9996654
No 4
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-143 Score=1147.80 Aligned_cols=635 Identities=56% Similarity=0.961 Sum_probs=610.4
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHH
Q 004850 55 YYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSR 134 (727)
Q Consensus 55 ~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~ 134 (727)
...+-+.|+.||++..+.+++.+|.++++++|.|+||||||||+||++++++ +.+ .+..|.||||||++|++||.
T Consensus 254 ~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaG-ytk----~gk~IgcTQPRRVAAmSVAa 328 (902)
T KOG0923|consen 254 RESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAG-YTK----GGKKIGCTQPRRVAAMSVAA 328 (902)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcc-ccc----CCceEeecCcchHHHHHHHH
Confidence 4456677899999999999999999999999999999999999999999988 655 24459999999999999999
Q ss_pred HHHHhccccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhC
Q 004850 135 RVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR 214 (727)
Q Consensus 135 ~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~ 214 (727)
||++++++.+|..|||.+||+++.+.+|.++|||+|+|+|.++..+.|..|+++|+||||||++.+|.|+++++++.+.|
T Consensus 329 RVA~EMgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~R 408 (902)
T KOG0923|consen 329 RVAEEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFR 408 (902)
T ss_pred HHHHHhCcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEcCcccHHHHHhhhcCCCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHH
Q 004850 215 PDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIED 294 (727)
Q Consensus 215 ~~~~vil~SATl~~~~~~~~f~~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~ 294 (727)
|+++++++|||+|+++|+.||.++|++.+|||.|||+++|...|..||+++++.++++||...+.|+||||++|+++|+.
T Consensus 409 pdLKllIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt 488 (902)
T KOG0923|consen 409 PDLKLLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIET 488 (902)
T ss_pred CcceEEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCcc
Q 004850 295 ACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAK 374 (727)
Q Consensus 295 l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k 374 (727)
+.+.|.+....++.....+.++|+|++||.+.|.++|++.|+| .||||+|||||||||||+||.||||+|++|
T Consensus 489 ~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~g-------aRKVVLATNIAETSlTIdgI~yViDpGf~K 561 (902)
T KOG0923|consen 489 VKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPG-------ARKVVLATNIAETSLTIDGIKYVIDPGFVK 561 (902)
T ss_pred HHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCC-------ceeEEEeecchhhceeecCeEEEecCcccc
Confidence 9999999988888888889999999999999999999999999 899999999999999999999999999999
Q ss_pred ceeeccccCccccccccccHhhHHhhhcccCCCCCceEEEecchhhhcccCCCCCCCcccccCchhhHHHHHHcCCCCcc
Q 004850 375 QKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLV 454 (727)
Q Consensus 375 ~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~~~~~~~l~~~~~pei~r~~l~~~~L~lk~~~~~~~~ 454 (727)
++.|+|++||++|.++|||++++.||+|||||++||+||||||...|.+.+...++|||+|++|.+++|.||+|||.|+.
T Consensus 562 ~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~ 641 (902)
T KOG0923|consen 562 QNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLI 641 (902)
T ss_pred ccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcHHHHHHHHHHHHHcCCcCCCCCcchhhhhhccCCCChhhhhHHhhcCCCCChHHHHHHHHHhcCC-CCCCC
Q 004850 455 HFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVP-NCFVR 533 (727)
Q Consensus 455 ~~~~~~~P~~~~i~~a~~~L~~lgald~~~~lT~lG~~l~~lPl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~-~~f~~ 533 (727)
+|+|+|||+.+++..|++.|+.|||||..|.||.+|+.|++||+||.++|||+.+..+.|.+++++||||||+. ++|.+
T Consensus 642 ~FdFmDpPp~etL~~aLE~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyr 721 (902)
T KOG0923|consen 642 HFDFLDPPPTETLLKALEQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYR 721 (902)
T ss_pred ccccCCCCChHHHHHHHHHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995 59999
Q ss_pred chHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCchhhHHhhcCChHHHHHHHHHHHHHHHHHHHcCCcccCCCCCC
Q 004850 534 PREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNS 613 (727)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~sD~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~ql~~~l~~~~~~~~~~~~~~ 613 (727)
|.+....++.+++.|....|||+++|++|++|...+.+.+||.+||+.+++|.++.++|.||..++.+.++...++.
T Consensus 722 pk~~~v~ad~a~~~f~~~~gDhi~~L~vyn~w~es~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~~--- 798 (902)
T KOG0923|consen 722 PKDKQVHADNARKNFEEPVGDHIVLLNVYNQWKESKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSNQ--- 798 (902)
T ss_pred chhhhhhhhhhhhccCCCCcchhhhhHHHHHHhhcchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCCh---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888776543
Q ss_pred cchHHHHHHHHHHhcccceEEEcCCCcEEEeecCceEEECCCCCC-CCCCcEEEEeeeccchhhhcccccccCHHHHHhh
Q 004850 614 RDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCL-DHKPEWVIYNEYVLTSRNFIRTVTDVRGEWLIDI 692 (727)
Q Consensus 614 ~~~~~~i~~~l~~g~~~nva~~~~~~~y~~~~~~~~~~ihpsS~l-~~~~~~vvy~e~~~t~~~~~~~~t~i~~~wl~~~ 692 (727)
.+...|++|+.+|||+|+|+...+|.|.|+...+.|++||.|++ ...|.||||++++.|+|.|||.++.+.++||.++
T Consensus 799 -~~~~~irk~i~aGff~h~a~l~~~g~y~tvk~~~tv~~hp~S~l~~~~P~wvvy~eLv~tske~mr~~~e~e~~Wlie~ 877 (902)
T KOG0923|consen 799 -NDLDKIRKAITAGFFYHTAKLSKGGHYRTVKHPQTVSIHPNSGLFEQLPRWVVYHELVLTSKEFMRQVIEIEEEWLIEV 877 (902)
T ss_pred -HHHHHHHHHHhccccccceeccCCCcceeeccCcceeecCcccccccCCceEEEeehhcChHHHHHHHHhhhhhHHHHh
Confidence 25678999999999999999999999999999999999999999 4578999999999999999999999999999999
Q ss_pred cCcccccccCCcc
Q 004850 693 APHYYDLSNFPQC 705 (727)
Q Consensus 693 ~~~~~~~~~~~~~ 705 (727)
+||||+..++...
T Consensus 878 aphyyk~kdled~ 890 (902)
T KOG0923|consen 878 APHYYKLKDLEDA 890 (902)
T ss_pred chhhhhhhhcccc
Confidence 9999987776543
No 5
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=4.7e-119 Score=1065.95 Aligned_cols=614 Identities=38% Similarity=0.663 Sum_probs=560.8
Q ss_pred HhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 61 KRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 61 ~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
.+..||++.++.+|++++.++++++|+|+|||||||++|+++++.. ... ...|+||||+++++.++|+++++++
T Consensus 69 ~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g-~g~-----~g~I~~TQPRRlAArsLA~RVA~El 142 (1294)
T PRK11131 69 YPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELG-RGV-----KGLIGHTQPRRLAARTVANRIAEEL 142 (1294)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcC-CCC-----CCceeeCCCcHHHHHHHHHHHHHHH
Confidence 3467999999999999999999999999999999999999988643 111 2258999999999999999999999
Q ss_pred cccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEE
Q 004850 141 DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLV 220 (727)
Q Consensus 141 ~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vi 220 (727)
+..+|..|||.+++++..+.++.|+++|+|++++++..++.++++++|||||||||++++|+++++++.++..+|++|+|
T Consensus 143 ~~~lG~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvI 222 (1294)
T PRK11131 143 ETELGGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVI 222 (1294)
T ss_pred hhhhcceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEE
Confidence 99999999999999998888999999999999999999999999999999999999999999999999998888899999
Q ss_pred EEcCcccHHHHHhhhcCCCeeeeCCCccceeeeeccCCc------ccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHH
Q 004850 221 VMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPE------RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIED 294 (727)
Q Consensus 221 l~SATl~~~~~~~~f~~~p~i~v~g~~~~v~~~y~~~~~------~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~ 294 (727)
+||||++.+.|++||.++|++.++|+.|||+++|.+... .+++..++..+..++ .+++|+|||||||+++|+.
T Consensus 223 LmSATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~ 301 (1294)
T PRK11131 223 ITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSGEREIRD 301 (1294)
T ss_pred EeeCCCCHHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHH
Confidence 999999999999999999999999999999999987643 345555555555554 3568999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCcc
Q 004850 295 ACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAK 374 (727)
Q Consensus 295 l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k 374 (727)
+++.|.... .+.+.+++|||+|++++|.++|++. | .++|||||||||||||||||+||||+|++|
T Consensus 302 lae~L~~~~------~~~~~VlpLhg~Ls~~eQ~~Vf~~~--g-------~rkIIVATNIAEtSITIpgI~yVID~Gl~k 366 (1294)
T PRK11131 302 TADALNKLN------LRHTEILPLYARLSNSEQNRVFQSH--S-------GRRIVLATNVAETSLTVPGIKYVIDPGTAR 366 (1294)
T ss_pred HHHHHHhcC------CCcceEeecccCCCHHHHHHHhccc--C-------CeeEEEeccHHhhccccCcceEEEECCCcc
Confidence 999998641 2346799999999999999999873 5 789999999999999999999999999999
Q ss_pred ceeeccccCccccccccccHhhHHhhhcccCCCCCceEEEecchhhhcccCCCCCCCcccccCchhhHHHHHHcCCCCcc
Q 004850 375 QKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLV 454 (727)
Q Consensus 375 ~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~~~~~~~l~~~~~pei~r~~l~~~~L~lk~~~~~~~~ 454 (727)
.++||+.++++.|...|+|+++|.||+|||||+++|.||+||++++|.. +++++.|||+|++|.+++|+++++|+.++.
T Consensus 367 ~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~-~~~~~~PEIlR~~L~~viL~lk~lgl~di~ 445 (1294)
T PRK11131 367 ISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLS-RPEFTDPEILRTNLASVILQMTALGLGDIA 445 (1294)
T ss_pred ccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHh-hhcccCCccccCCHHHHHHHHHHcCCCCcc
Confidence 9999999999999999999999999999999999999999999999987 999999999999999999999999999999
Q ss_pred cccCCCCCcHHHHHHHHHHHHHcCCcCCC-----CCcchhhhhhccCCCChhhhhHHhhcCCCCChHHHHHHHHHhcCCC
Q 004850 455 HFDFMDPPAPETLMRALEVLNYLGALDDD-----GNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPN 529 (727)
Q Consensus 455 ~~~~~~~P~~~~i~~a~~~L~~lgald~~-----~~lT~lG~~l~~lPl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~ 529 (727)
.|+|++||+.++|..|++.|..+||||.+ ++||++|+.|++||+||++||||+.|..++|++++++|||+||+++
T Consensus 446 ~F~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~d 525 (1294)
T PRK11131 446 AFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQD 525 (1294)
T ss_pred eeeCCCCCCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999864 5799999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc------CCchhhHHhhcCChHHHHHHHHHHHHHHHHHHHcC
Q 004850 530 CFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQN------NEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFN 603 (727)
Q Consensus 530 ~f~~~~~~~~~~~~~~~~~~~~~sD~l~~l~~~~~~~~~------~~~~~~c~~~~l~~~~l~~~~~i~~ql~~~l~~~~ 603 (727)
||..|.+.+++++.++..|.+..|||++++|+|+.|... +..++||++||||+..|+++.+++.||.++++++|
T Consensus 526 pf~~p~~~~~~a~~~~~~f~~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g 605 (1294)
T PRK11131 526 PRERPMDKQQASDEKHRRFADKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELG 605 (1294)
T ss_pred cccCCchhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999988899999999999999999999999999753 12357999999999999999999999999999999
Q ss_pred CcccCCCCCCcchHHHHHHHHHHhcccceEEEcCCC-cEEEeecCceEEECCCCCC-CCCCcEEEEeeeccchhhhcccc
Q 004850 604 LKLCSNDFNSRDYYVNIRKAMLAGYFMQVAHLERTG-QYLTVKDNQVVHLHPSNCL-DHKPEWVIYNEYVLTSRNFIRTV 681 (727)
Q Consensus 604 ~~~~~~~~~~~~~~~~i~~~l~~g~~~nva~~~~~~-~y~~~~~~~~~~ihpsS~l-~~~~~~vvy~e~~~t~~~~~~~~ 681 (727)
+...+.. .+++.|++||++|||+|||++..++ .|.+.. +..++|||+|++ +.+|+||||+|++.|++.|||+|
T Consensus 606 ~~~~~~~----~~~~~i~~all~G~~~nva~~~~~~~~y~~~~-~~~~~ihP~S~L~~~~p~wvv~~Elv~Tsr~y~r~v 680 (1294)
T PRK11131 606 IPVNSEP----AEYREIHTALLTGLLSHIGMKDAEKQEYTGAR-NARFSIFPGSGLFKKPPKWVMVAELVETSRLWGRIA 680 (1294)
T ss_pred CCCCCCc----ccHHHHHHHHHhhcHHHHeeccCCCCeEEccC-CcEEEEcCCccccCCCCCEEEEEeeeccChhhhhhh
Confidence 8765432 3578999999999999999987765 476554 778999999999 45799999999999999999999
Q ss_pred cccCHHHHHhhcCcccccccC
Q 004850 682 TDVRGEWLIDIAPHYYDLSNF 702 (727)
Q Consensus 682 t~i~~~wl~~~~~~~~~~~~~ 702 (727)
+.|+|+||.+++|++++....
T Consensus 681 a~I~p~Wl~~~a~~l~~~~y~ 701 (1294)
T PRK11131 681 ARIEPEWIEPLAQHLIKRSYS 701 (1294)
T ss_pred cccCHHHHHHHHHHhccccCC
Confidence 999999999999999866543
No 6
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1e-114 Score=1033.04 Aligned_cols=612 Identities=40% Similarity=0.689 Sum_probs=560.6
Q ss_pred HhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 61 KRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 61 ~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
....||++.++.+|+.+|..+++++|.|+|||||||++|+++++.. ... ...|+|||||++++.++++++++++
T Consensus 62 ~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~-~~~-----~~~I~~tQPRRlAA~svA~RvA~el 135 (1283)
T TIGR01967 62 YPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELG-RGS-----HGLIGHTQPRRLAARTVAQRIAEEL 135 (1283)
T ss_pred CCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcC-CCC-----CceEecCCccHHHHHHHHHHHHHHh
Confidence 3457999999999999999999999999999999999999998754 111 2358899999999999999999999
Q ss_pred cccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEE
Q 004850 141 DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLV 220 (727)
Q Consensus 141 ~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vi 220 (727)
+..+|..|||.+++++..+.++.|.++|+|++++.+..++.+.++++|||||||||++++|++++++++++..++++|+|
T Consensus 136 g~~lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlI 215 (1283)
T TIGR01967 136 GTPLGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKII 215 (1283)
T ss_pred CCCcceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EEcCcccHHHHHhhhcCCCeeeeCCCccceeeeeccCCc------ccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHH
Q 004850 221 VMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPE------RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIED 294 (727)
Q Consensus 221 l~SATl~~~~~~~~f~~~p~i~v~g~~~~v~~~y~~~~~------~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~ 294 (727)
+||||++.+.|++||.++|++.++|+.|||+++|.+... .++.+.++..+..++. +.+|+|||||||+.+|+.
T Consensus 216 lmSATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~ 294 (1283)
T TIGR01967 216 ITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPGDILIFLPGEREIRD 294 (1283)
T ss_pred EEeCCcCHHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHH
Confidence 999999999999999999999999999999999986532 2455555666655554 467999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCcc
Q 004850 295 ACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAK 374 (727)
Q Consensus 295 l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k 374 (727)
+++.|++.. .+++.+++|||+|++++|.++|+++. .+||||||||||||||||||+||||+|++|
T Consensus 295 l~~~L~~~~------~~~~~VlpLhg~Ls~~eQ~~vf~~~~---------~rkIVLATNIAEtSLTIpgV~yVIDsGl~r 359 (1283)
T TIGR01967 295 AAEILRKRN------LRHTEILPLYARLSNKEQQRVFQPHS---------GRRIVLATNVAETSLTVPGIHYVIDTGTAR 359 (1283)
T ss_pred HHHHHHhcC------CCCcEEEeccCCCCHHHHHHHhCCCC---------CceEEEeccHHHhccccCCeeEEEeCCCcc
Confidence 999998641 23578999999999999999998752 579999999999999999999999999999
Q ss_pred ceeeccccCccccccccccHhhHHhhhcccCCCCCceEEEecchhhhcccCCCCCCCcccccCchhhHHHHHHcCCCCcc
Q 004850 375 QKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLV 454 (727)
Q Consensus 375 ~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~~~~~~~l~~~~~pei~r~~l~~~~L~lk~~~~~~~~ 454 (727)
.++|||.++++.|.+.|+|+++|.||+|||||+++|+||+||++++|.. +++++.|||+|++|.+++|+++++|+.++.
T Consensus 360 ~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~-~~~~~~PEIlR~~L~~viL~l~~lg~~di~ 438 (1283)
T TIGR01967 360 ISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNS-RPEFTDPEILRTNLASVILQMLALRLGDIA 438 (1283)
T ss_pred ccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHh-hhhccCcccccccHHHHHHHHHhcCCCCcc
Confidence 9999999999999999999999999999999999999999999999987 999999999999999999999999999999
Q ss_pred cccCCCCCcHHHHHHHHHHHHHcCCcCCCC---CcchhhhhhccCCCChhhhhHHhhcCCCCChHHHHHHHHHhcCCCCC
Q 004850 455 HFDFMDPPAPETLMRALEVLNYLGALDDDG---NLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCF 531 (727)
Q Consensus 455 ~~~~~~~P~~~~i~~a~~~L~~lgald~~~---~lT~lG~~l~~lPl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f 531 (727)
.|+|++||+.+++..|++.|..+||||.+| +||++|+.|+.||+||++||||+.|..++|++++++|||+||+++||
T Consensus 439 ~f~fldpP~~~~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~ 518 (1283)
T TIGR01967 439 AFPFIEAPDPRAIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPR 518 (1283)
T ss_pred cccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcC
Confidence 999999999999999999999999999998 79999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC------CchhhHHhhcCChHHHHHHHHHHHHHHHHHHHcCCc
Q 004850 532 VRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNN------EDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLK 605 (727)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~sD~l~~l~~~~~~~~~~------~~~~~c~~~~l~~~~l~~~~~i~~ql~~~l~~~~~~ 605 (727)
..|.+.++.++.++..|.+..|||++++|+|+.|.... ..+.||++||||+..|+++.+++.||.++++++|+.
T Consensus 519 ~~p~~~~~~a~~~~~~f~~~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~ 598 (1283)
T TIGR01967 519 ERPMEKQQAADQAHARFKDPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLK 598 (1283)
T ss_pred CCcchhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99998888999999999999999999999999997531 236899999999999999999999999999998876
Q ss_pred ccCCCCCCcchHHHHHHHHHHhcccceEEEcCCCcEEEeecCceEEECCCCCCC-CCCcEEEEeeeccchhhhccccccc
Q 004850 606 LCSNDFNSRDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLD-HKPEWVIYNEYVLTSRNFIRTVTDV 684 (727)
Q Consensus 606 ~~~~~~~~~~~~~~i~~~l~~g~~~nva~~~~~~~y~~~~~~~~~~ihpsS~l~-~~~~~vvy~e~~~t~~~~~~~~t~i 684 (727)
..+. ..+.+.+.+||++||++|||++...+.|.+.. |..+.|||+|++. .+|+||||+|++.|++.||+.|++|
T Consensus 599 ~~~~----~~~~~~i~~~l~~g~~~~iA~~~~~~~y~~~~-g~~~~ihP~S~L~~~~p~wvv~~elv~t~~~~ir~~a~I 673 (1283)
T TIGR01967 599 LNEE----PADYDAIHKALLSGLLSQIGMKDEKHEYDGAR-GRKFHIFPGSPLFKKPPKWVMAAELVETSKLYARLVAKI 673 (1283)
T ss_pred cCCC----CccHHHHHHHHHHhhHHHHheeCCCCcEEecC-CcEEEECCCccccCCCCCEEEEeeecccchheEeeeccC
Confidence 5432 12456799999999999999988777897754 6789999999994 4589999999999999999999999
Q ss_pred CHHHHHhhcCcccccc
Q 004850 685 RGEWLIDIAPHYYDLS 700 (727)
Q Consensus 685 ~~~wl~~~~~~~~~~~ 700 (727)
+|+||.+++|++++..
T Consensus 674 ~p~wl~~~~~~~~~~~ 689 (1283)
T TIGR01967 674 EPEWVEPVAGHLIKKN 689 (1283)
T ss_pred CHHHHHHHhHHHhEec
Confidence 9999999999988655
No 7
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.4e-114 Score=994.61 Aligned_cols=630 Identities=46% Similarity=0.733 Sum_probs=573.3
Q ss_pred CCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccc
Q 004850 46 WNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPR 125 (727)
Q Consensus 46 f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~ 125 (727)
+.....++....+++.+..||++..+.+|+.++.++++++|.|+|||||||++|+++++.. +.. +..|++||||
T Consensus 30 ~~~~~~~~~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g-~~~-----~g~I~~tQPR 103 (845)
T COG1643 30 MDARSRSANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEG-LGI-----AGKIGCTQPR 103 (845)
T ss_pred hhhhhcccccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhh-ccc-----CCeEEecCch
Confidence 4444455566677888899999999999999999999999999999999999999999876 322 3359999999
Q ss_pred hhhhccHHHHHHHhccccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHH
Q 004850 126 RVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFG 205 (727)
Q Consensus 126 ~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ 205 (727)
|++|.++|++++++++.++|+.|||.+||++..+.+|+|+++|+|+|+++++.++.|++|++||+||||||++++|++++
T Consensus 104 RlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLg 183 (845)
T COG1643 104 RLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLG 183 (845)
T ss_pred HHHHHHHHHHHHHHhCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCC-CCEEEEEcCcccHHHHHhhhcCCCeeeeCCCccceeeeeccCCcccH-HHHHHHHHHHHhhcCCCCCEE
Q 004850 206 LLKEVLKNRP-DLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDY-LEAAIRTVVQIHMCEPSGDIL 283 (727)
Q Consensus 206 ll~~l~~~~~-~~~vil~SATl~~~~~~~~f~~~p~i~v~g~~~~v~~~y~~~~~~~~-~~~~~~~l~~i~~~~~~g~iL 283 (727)
++++++..++ ++++|+||||+|.+.|+.||+++|++.++|+.|||+++|.+....++ ++..+...++++..+++|+||
T Consensus 184 llk~~~~~rr~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdIL 263 (845)
T COG1643 184 LLKDLLARRRDDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSIL 263 (845)
T ss_pred HHHHHHhhcCCCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEE
Confidence 9999877666 79999999999999999999999999999999999999998888888 999999999999999999999
Q ss_pred EecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCC
Q 004850 284 VFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDG 363 (727)
Q Consensus 284 VFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~ 363 (727)
|||||.+||+.+++.|.+. .++ +.+.++||||.|+.++|.++|++.+.| +||||+|||||||||||||
T Consensus 264 vFLpG~~EI~~~~~~L~~~--~l~---~~~~i~PLy~~L~~~eQ~rvF~p~~~~-------~RKVVlATNIAETSLTI~g 331 (845)
T COG1643 264 VFLPGQREIERTAEWLEKA--ELG---DDLEILPLYGALSAEEQVRVFEPAPGG-------KRKVVLATNIAETSLTIPG 331 (845)
T ss_pred EECCcHHHHHHHHHHHHhc--ccc---CCcEEeeccccCCHHHHHhhcCCCCCC-------cceEEEEccccccceeeCC
Confidence 9999999999999999871 122 469999999999999999999999998 8999999999999999999
Q ss_pred eEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCCCceEEEecchhhhcccCCCCCCCcccccCchhhHH
Q 004850 364 IVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVL 443 (727)
Q Consensus 364 V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~~~~~~~l~~~~~pei~r~~l~~~~L 443 (727)
|+||||+|+.|+++||+.+|++.|.++|||++++.||+|||||++||+|||||++++|.. |+.++.|||+|+||+.++|
T Consensus 332 Ir~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~-~~~~t~PEIlrtdLs~~vL 410 (845)
T COG1643 332 IRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLA-FPEFTLPEILRTDLSGLVL 410 (845)
T ss_pred eEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHh-cccCCChhhhhcchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999995 9999999999999999999
Q ss_pred HHHHcCCC-CcccccCCCCCcHHHHHHHHHHHHHcCCcCCCCCcchhhhhhccCCCChhhhhHHhhcCCCCChHHHHHHH
Q 004850 444 TLKKLGID-DLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSIS 522 (727)
Q Consensus 444 ~lk~~~~~-~~~~~~~~~~P~~~~i~~a~~~L~~lgald~~~~lT~lG~~l~~lPl~p~~~k~ll~~~~~~c~~~~l~i~ 522 (727)
++++||++ ++..|+|+|||+..++..|++.|+.+||||.+|.||++|+.|+.||+||++|+||+.|..++|++++++||
T Consensus 411 ~l~~~G~~~d~~~f~fld~P~~~~i~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ia 490 (845)
T COG1643 411 QLKSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIA 490 (845)
T ss_pred HHHhcCCCCCcccCccCCCCChHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHH
Confidence 99999996 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCC---CCCCchHHHH---HHHHHH-HHhCC---CCCCHHHHHHHHHHHhhcC------CchhhHHhhcCChHHHH
Q 004850 523 AMLSVPN---CFVRPREAQK---AADEAK-ARFGH---IDGDHLTLLNVYHAYKQNN------EDPSWCYDNFVNHRALK 586 (727)
Q Consensus 523 a~ls~~~---~f~~~~~~~~---~~~~~~-~~~~~---~~sD~l~~l~~~~~~~~~~------~~~~~c~~~~l~~~~l~ 586 (727)
|+||+++ .|..+.+.++ ....++ ..+.+ +.+||++++++|..|.... ....||+.++++++.|.
T Consensus 491 s~Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~ 570 (845)
T COG1643 491 SMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALS 570 (845)
T ss_pred HhhccCCCcchhccccchhhHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHH
Confidence 9999988 6777766555 333333 33444 6899999999999998765 56789999999999999
Q ss_pred HHHHHHHHHHHHHHH-cCCcccCCCCCC--------------cchHHHHHHHHHHhcccceEEEcCCCc-EEEeecCceE
Q 004850 587 SADNVRQQLVRIMAR-FNLKLCSNDFNS--------------RDYYVNIRKAMLAGYFMQVAHLERTGQ-YLTVKDNQVV 650 (727)
Q Consensus 587 ~~~~i~~ql~~~l~~-~~~~~~~~~~~~--------------~~~~~~i~~~l~~g~~~nva~~~~~~~-y~~~~~~~~~ 650 (727)
++..++.++...+.+ .+........+. ...|+.+.+++++|++.|++.+...+. |.++.++..+
T Consensus 571 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~v 650 (845)
T COG1643 571 RAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEPIWDDIRGALAAGRKLNIAQLQLDGRPYVTLSDNTPV 650 (845)
T ss_pred hhHHHHHHHHHhhhccccchhhhcccCcchhhhhhhhhhhccchhHHHHhhhhhhheecceeeeeccccccccCCCCcee
Confidence 999999998888766 444332211110 114788999999999999999887764 9999999999
Q ss_pred EECCCCC-C-CCCCcEEEEeeeccchhhhcc-----------cccccCHHHHHhhcC
Q 004850 651 HLHPSNC-L-DHKPEWVIYNEYVLTSRNFIR-----------TVTDVRGEWLIDIAP 694 (727)
Q Consensus 651 ~ihpsS~-l-~~~~~~vvy~e~~~t~~~~~~-----------~~t~i~~~wl~~~~~ 694 (727)
.+||+|+ . ...++|++|++.+.+++.|++ .++.+.++||.+.++
T Consensus 651 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~wL~~~~~ 707 (845)
T COG1643 651 FAHPSSVRLGLVLLEWIKYAEFLRTRKGYLREGRGERWPDVQTLIELLKLWLKEQVK 707 (845)
T ss_pred EecchhHhhcccCcchHHHHHHHHHHHHHHhhcccccCcccchHhhhHHHhhhhhcc
Confidence 9999994 3 456899999999999999999 599999999999988
No 8
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=1.9e-112 Score=972.86 Aligned_cols=639 Identities=36% Similarity=0.613 Sum_probs=572.0
Q ss_pred CCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEccc
Q 004850 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQP 124 (727)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p 124 (727)
.+.....++.+.+++..|..||+++.+++|+++|.++++++|.|+||||||||+||++++.. +... ..+.|+||||
T Consensus 152 ~~~~~~~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~-~~~~---~~~~IicTQP 227 (924)
T KOG0920|consen 152 RQSEPKKSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEA-IESG---AACNIICTQP 227 (924)
T ss_pred hhchhhhhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHH-HhcC---CCCeEEecCC
Confidence 45555677889999999999999999999999999999999999999999999999999875 3322 3566999999
Q ss_pred chhhhccHHHHHHHhccccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHH
Q 004850 125 RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLF 204 (727)
Q Consensus 125 ~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll 204 (727)
||++|+++|++|+++++...|..|||++|.+......+.+.|+|.|.++|.++.++.+.++++||+||+|||++++|+++
T Consensus 228 RRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflL 307 (924)
T KOG0920|consen 228 RRISAISVAERVAKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLL 307 (924)
T ss_pred chHHHHHHHHHHHHHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHH
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEcCcccHHHHHhhhcCCCeeeeCCCccceeeeeccC-----------------Cccc------
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQE-----------------PERD------ 261 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~~~~~~~~f~~~p~i~v~g~~~~v~~~y~~~-----------------~~~~------ 261 (727)
-+++.++.++|++++|+||||++++.|++||+++|++.++|++|||..+|++. +...
T Consensus 308 i~lk~lL~~~p~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (924)
T KOG0920|consen 308 ILLKDLLPRNPDLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLAR 387 (924)
T ss_pred HHHHHHhhhCCCceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCcccccc
Confidence 99999999999999999999999999999999999999999999999998752 0111
Q ss_pred --------HHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCC
Q 004850 262 --------YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEP 333 (727)
Q Consensus 262 --------~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~ 333 (727)
..+.....+..|+..+..|.|||||||+++|..+.+.|..... ..+..++.+.++||.|+..+|+.+|+.
T Consensus 388 ~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~--f~~~~~~~ilplHs~~~s~eQ~~VF~~ 465 (924)
T KOG0920|consen 388 LKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLP--FADSLKFAILPLHSSIPSEEQQAVFKR 465 (924)
T ss_pred chhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccc--cccccceEEEeccccCChHHHHHhcCC
Confidence 1223344556677777799999999999999999999975421 111246899999999999999999999
Q ss_pred CCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCCCceEE
Q 004850 334 APPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCF 413 (727)
Q Consensus 334 ~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~ 413 (727)
.+.| .||||+||||||+|||||||.||||+|++|++.|||..+++.|...|+|++++.||+|||||+++|.||
T Consensus 466 pp~g-------~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy 538 (924)
T KOG0920|consen 466 PPKG-------TRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICY 538 (924)
T ss_pred CCCC-------cchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeE
Confidence 9999 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecchhhhcccCCCCCCCcccccCchhhHHHHHHcCCCCcccc--cCCCCCcHHHHHHHHHHHHHcCCcCCCCCcchhhh
Q 004850 414 RLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF--DFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGE 491 (727)
Q Consensus 414 ~L~t~~~~~~~l~~~~~pei~r~~l~~~~L~lk~~~~~~~~~~--~~~~~P~~~~i~~a~~~L~~lgald~~~~lT~lG~ 491 (727)
+||++..|+..+..+++|||+|.+|.++||++|.+++.++..| ..++||+.+++..|+..|..+||+|.+++||+||+
T Consensus 539 ~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~ 618 (924)
T KOG0920|consen 539 HLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGL 618 (924)
T ss_pred EeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHH
Confidence 9999999999666699999999999999999999999887766 77999999999999999999999999999999999
Q ss_pred hhccCCCChhhhhHHhhcCCCCChHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhhc--
Q 004850 492 KMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGH-IDGDHLTLLNVYHAYKQN-- 568 (727)
Q Consensus 492 ~l~~lPl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~~~~-~~sD~l~~l~~~~~~~~~-- 568 (727)
+|+.||+||++|||+++|..|+|++++++|||+|+.++||..|.+.++.++++++.|.. ..||||+++++|+.|+..
T Consensus 619 ~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~~ 698 (924)
T KOG0920|consen 619 HLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGWREILR 698 (924)
T ss_pred HHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998876 459999999999999875
Q ss_pred ---CCchhhHHhhcCChHHHHHHHHHHHHHHHHHHHcCCcccCC-----C---CCCcchHHHHHHHHHHhcccceEEEcC
Q 004850 569 ---NEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSN-----D---FNSRDYYVNIRKAMLAGYFMQVAHLER 637 (727)
Q Consensus 569 ---~~~~~~c~~~~l~~~~l~~~~~i~~ql~~~l~~~~~~~~~~-----~---~~~~~~~~~i~~~l~~g~~~nva~~~~ 637 (727)
....+||++|||+..+|+++..++.|+.+.+.+.|+...+. + .....+.+.++++||+|||||+|+...
T Consensus 699 ~~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i~~~~~ 778 (924)
T KOG0920|consen 699 SGPSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNIAFVRR 778 (924)
T ss_pred ccchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCceeeeec
Confidence 24578999999999999999999999999999999865431 1 112356788999999999999999764
Q ss_pred ---CC---cEEEeecCceEEECCCCCCC----CCCcEEEEeeeccchh-hhcccccccCHHHHHhhcCccc
Q 004850 638 ---TG---QYLTVKDNQVVHLHPSNCLD----HKPEWVIYNEYVLTSR-NFIRTVTDVRGEWLIDIAPHYY 697 (727)
Q Consensus 638 ---~~---~y~~~~~~~~~~ihpsS~l~----~~~~~vvy~e~~~t~~-~~~~~~t~i~~~wl~~~~~~~~ 697 (727)
.. .|.+-.+ ..+.|||+|++. ...+|++|++.+.+++ .|+|++|.+++..+..+++..+
T Consensus 779 ~~~~~~~~~~~~~~~-~~v~i~~~sv~~~~~~~~~p~l~~~~k~~t~~~~~~rd~T~v~~~~~llfgg~~~ 848 (924)
T KOG0920|consen 779 MEPKSKSVTFVTKAD-GRVIIHPSSVNEQSTGFQSPFLVFPEKVKSTRLVSLRDTTSVSSSALLLFGGGIS 848 (924)
T ss_pred ccCCcCcceeecCCc-eeEEEecchhhccccccCCcceEEeeecccCCcceeeecCCCCcHHheeecCCce
Confidence 22 2333222 379999999982 2345999999999999 9999999999999999887544
No 9
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-111 Score=918.21 Aligned_cols=637 Identities=40% Similarity=0.647 Sum_probs=566.1
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHH
Q 004850 55 YYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSR 134 (727)
Q Consensus 55 ~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~ 134 (727)
-.++.+.|..||+..-.++|+++|..+.+|+|+|+||||||||+||++++.+ +........-.|.+|||||++++..|+
T Consensus 245 ~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAG-f~s~~~~~~gmIGITqPRRVAaiamAk 323 (1172)
T KOG0926|consen 245 PAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAG-FASEQSSSPGMIGITQPRRVAAIAMAK 323 (1172)
T ss_pred cHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcc-cCCccCCCCCeeeecCchHHHHHHHHH
Confidence 3467788999999999999999999999999999999999999999999987 655333334458999999999999999
Q ss_pred HHHHhccccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhC
Q 004850 135 RVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR 214 (727)
Q Consensus 135 ~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~ 214 (727)
||+.+++. .+..|||++||++....++.|++||+|.|++.+..+-+|..|++|||||||||++++|.|+++|.++...|
T Consensus 324 RVa~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR 402 (1172)
T KOG0926|consen 324 RVAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLR 402 (1172)
T ss_pred HHHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHH
Confidence 99999998 89999999999999999999999999999999999999999999999999999999999999999886533
Q ss_pred ----------CCCEEEEEcCcccHHHHH---hhhc-CCCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCC
Q 004850 215 ----------PDLKLVVMSATLEAEKFQ---GYFY-GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSG 280 (727)
Q Consensus 215 ----------~~~~vil~SATl~~~~~~---~~f~-~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g 280 (727)
..+++|+||||+.+..|. ..|. .+|+|.|+.|+|||.+||......||+..+....+.||.+-++|
T Consensus 403 ~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G 482 (1172)
T KOG0926|consen 403 QKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPG 482 (1172)
T ss_pred HHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCC
Confidence 268999999999988887 3454 47899999999999999999988999999999999999999999
Q ss_pred CEEEecCCHHHHHHHHHHHHHHHhh---------------------------------------------------c---
Q 004850 281 DILVFLTGEEEIEDACRKITKEITN---------------------------------------------------M--- 306 (727)
Q Consensus 281 ~iLVFl~~~~ei~~l~~~L~~~~~~---------------------------------------------------~--- 306 (727)
.||||++|+.||+.+|+.|++.... .
T Consensus 483 ~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~ 562 (1172)
T KOG0926|consen 483 GILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFA 562 (1172)
T ss_pred cEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccch
Confidence 9999999999999999999877210 0
Q ss_pred -----------------C-------------------CCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEE
Q 004850 307 -----------------G-------------------DQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVV 350 (727)
Q Consensus 307 -----------------~-------------------~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlv 350 (727)
+ ....++.|+||||-|+.+.|.++|++.+.| .|-|||
T Consensus 563 ~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g-------~RLcVV 635 (1172)
T KOG0926|consen 563 SLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKG-------ERLCVV 635 (1172)
T ss_pred hhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCC-------ceEEEE
Confidence 0 012368999999999999999999999999 899999
Q ss_pred ecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCCCceEEEecchhhhcccCCCCCC
Q 004850 351 STNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTY 430 (727)
Q Consensus 351 aTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~~~~~~~l~~~~~ 430 (727)
||||||||||||||+||||||.+|.+.||..+|++++.+.|||++++.||+|||||++||+|||||+..-|.++++.+..
T Consensus 636 aTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~ 715 (1172)
T KOG0926|consen 636 ATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSL 715 (1172)
T ss_pred eccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred CcccccCchhhHHHHHHcCCCCcccccCCCCCcHHHHHHHHHHHHHcCCcCCCCCcchhhhhhccCCCChhhhhHHhhcC
Q 004850 431 PEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESP 510 (727)
Q Consensus 431 pei~r~~l~~~~L~lk~~~~~~~~~~~~~~~P~~~~i~~a~~~L~~lgald~~~~lT~lG~~l~~lPl~p~~~k~ll~~~ 510 (727)
|||++.+.++++|++|+|+|+.+.+|+|++||.+.+++.|.+.|..|||||.+|.||++|+.||.||+.|++||||+.+.
T Consensus 716 PEIlk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~ 795 (1172)
T KOG0926|consen 716 PEILKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSD 795 (1172)
T ss_pred HHHhhCcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHhcCCCCCCCch-------------HH-------------------HHHHHHHHHHhCCCCCCHHHH
Q 004850 511 KYNCSNEILSISAMLSVPNCFVRPR-------------EA-------------------QKAADEAKARFGHIDGDHLTL 558 (727)
Q Consensus 511 ~~~c~~~~l~i~a~ls~~~~f~~~~-------------~~-------------------~~~~~~~~~~~~~~~sD~l~~ 558 (727)
+.+|+.-++.++++||+.++|+.-. ++ +.....++.+|+...||.|++
T Consensus 796 Q~~~lpy~i~lvsaLsv~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~sd~l~L 875 (1172)
T KOG0926|consen 796 QHNLLPYNIALVSALSVYEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLDSDALVL 875 (1172)
T ss_pred hhcchhHHHHHHHHHhccchhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccCCccHHHH
Confidence 9999999999999999998876321 00 111223556777788999999
Q ss_pred HHHHHHHhhcCCchhhHHhhcCChHHHHHHHHHHHHHHHHHHHcCCcccCC------CCCCcchHHHHHHHHHHhcccce
Q 004850 559 LNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSN------DFNSRDYYVNIRKAMLAGYFMQV 632 (727)
Q Consensus 559 l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~ql~~~l~~~~~~~~~~------~~~~~~~~~~i~~~l~~g~~~nv 632 (727)
+.+..++..+.+...||..|||..++|.++.++|.||..++...++..... ..........++..|||||.++|
T Consensus 876 l~Av~a~ey~~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~Ag~~DrV 955 (1172)
T KOG0926|consen 876 LSAVSAAEYAENGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICAGFADRV 955 (1172)
T ss_pred HHHHHHHHhhhhcchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 999999888777778999999999999999999999999988655432211 11112234567889999999999
Q ss_pred EEEcCCCcEEEeecCceEEECCCCCC-CCCCcEEEEeeeccchhhhccc-ccccCHHHHHhhcCcccccc
Q 004850 633 AHLERTGQYLTVKDNQVVHLHPSNCL-DHKPEWVIYNEYVLTSRNFIRT-VTDVRGEWLIDIAPHYYDLS 700 (727)
Q Consensus 633 a~~~~~~~y~~~~~~~~~~ihpsS~l-~~~~~~vvy~e~~~t~~~~~~~-~t~i~~~wl~~~~~~~~~~~ 700 (727)
|++..-..|-+..-+.+++|||.|++ +..|+||+|.+++.+...||.+ ++.|+|+||..+++.++...
T Consensus 956 Ark~~~~~y~~~~i~~~~fl~~~svl~~~ape~viY~el~~~~~~~~~~~v~~v~pewl~~~~~slcn~~ 1025 (1172)
T KOG0926|consen 956 ARKVDATEYDAAKIQEPVFLHRWSVLINSAPELVIYQELLLTNRPYMHGGVTAVRPEWLLNHAKSLCNFS 1025 (1172)
T ss_pred HHhccccccchhhhcCceeeeehhhhhccCccceehhhhhhcCCcccccceEEEchHHHHhhhhhhcccc
Confidence 99765544655555668999999999 6789999999999998876555 99999999999999776544
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.2e-92 Score=828.62 Aligned_cols=571 Identities=30% Similarity=0.478 Sum_probs=491.1
Q ss_pred CCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccc
Q 004850 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (727)
Q Consensus 65 lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (727)
||++.+..+|+.++..++++++.|+|||||||++++++++.. .. ...+++++|+++++.+++++++++++..+
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~-~~------~~~ilvlqPrR~aA~qiA~rva~~~~~~~ 73 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAP-GI------GGKIIMLEPRRLAARSAAQRLASQLGEAV 73 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhh-cc------CCeEEEEeCcHHHHHHHHHHHHHHhCCCc
Confidence 799999999999999999999999999999999999999764 11 23589999999999999999999999999
Q ss_pred cceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHH-hCCCCEEEEEc
Q 004850 145 GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMS 223 (727)
Q Consensus 145 ~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~-~~~~~~vil~S 223 (727)
+..|||.++++.....+++|.++|+|++++++..++.+.++++|||||+|||++++|+.+.+++++.. .++++|+|+||
T Consensus 74 g~~VGy~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmS 153 (819)
T TIGR01970 74 GQTVGYRVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMS 153 (819)
T ss_pred CcEEEEEEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEe
Confidence 99999999999888788999999999999999988889999999999999999999999888888765 35689999999
Q ss_pred CcccHHHHHhhhcCCCeeeeCCCccceeeeeccCCcccHHHHHH-HHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHH
Q 004850 224 ATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAI-RTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKE 302 (727)
Q Consensus 224 ATl~~~~~~~~f~~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~-~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~ 302 (727)
||++.+.+++||.++|++.++|+.|||+++|...+..+++...+ ..+.++. .+..|+|||||||+++|+.+++.|.+.
T Consensus 154 ATl~~~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l-~~~~g~iLVFlpg~~eI~~l~~~L~~~ 232 (819)
T TIGR01970 154 ATLDGERLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHAL-ASETGSILVFLPGQAEIRRVQEQLAER 232 (819)
T ss_pred CCCCHHHHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHH-HhcCCcEEEEECCHHHHHHHHHHHHhh
Confidence 99999889999999999999999999999999876666554433 2333333 345789999999999999999999864
Q ss_pred HhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeecccc
Q 004850 303 ITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRV 382 (727)
Q Consensus 303 ~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~ 382 (727)
. + +++.+++|||+|++++|.++|++|++| .+||||||||||||||||||+||||+|++|.+.|||.+
T Consensus 233 ~---~---~~~~v~pLHg~L~~~eq~~~~~~~~~G-------~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~ 299 (819)
T TIGR01970 233 L---D---SDVLICPLYGELSLAAQDRAIKPDPQG-------RRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKT 299 (819)
T ss_pred c---C---CCcEEEEecCCCCHHHHHHHHhhcccC-------CeEEEEecchHhhcccccCceEEEEcCccccccccccc
Confidence 2 1 368999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred CccccccccccHhhHHhhhcccCCCCCceEEEecchhhhcccCCCCCCCcccccCchhhHHHHHHcCCCCcccccCCCCC
Q 004850 383 RVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPP 462 (727)
Q Consensus 383 ~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~~~~~~~l~~~~~pei~r~~l~~~~L~lk~~~~~~~~~~~~~~~P 462 (727)
|++.|.++|||+++|.||+|||||+++|.||+||+++++.. |.+++.|||+|+||++++|+++++|+.++..|+|++||
T Consensus 300 g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~-l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~~P 378 (819)
T TIGR01970 300 GITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQR-LPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAP 378 (819)
T ss_pred CCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHh-hhcCCCcceeccCcHHHHHHHHHcCCCChhhCCCCCCc
Confidence 99999999999999999999999999999999999999977 99999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCcCCCCCcchhhhhhccCCCChhhhhHHhhcCCCCChHHHHHHHHHhcCCCCCCCchHHHHHHH
Q 004850 463 APETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAAD 542 (727)
Q Consensus 463 ~~~~i~~a~~~L~~lgald~~~~lT~lG~~l~~lPl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~ 542 (727)
+.+++..|++.|+.+||||++|+||++|+.|+.||+||++||||+.|..++|.+++++|||+|++++++..
T Consensus 379 ~~~~i~~a~~~L~~lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~~~--------- 449 (819)
T TIGR01970 379 PSVALAAARQLLQRLGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPRQ--------- 449 (819)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCCCC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999987532
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCCchhhHHhhcCChHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCcchHHHHHH
Q 004850 543 EAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNSRDYYVNIRK 622 (727)
Q Consensus 543 ~~~~~~~~~~sD~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~ql~~~l~~~~~~~~~~~~~~~~~~~~i~~ 622 (727)
..+|....+..+.... ...| ..+..+.+|+.+.+ +......... . + ..+-.
T Consensus 450 --------~~~d~~~~~~~~~~~~-----~~~~----------~~~~~~~~~~~~~~---~~~~~~~~~~-~-~-~~~g~ 500 (819)
T TIGR01970 450 --------GGADLMNRLHRLQQGR-----QGRG----------QRAQQLAKKLRRRL---RFSQADSGAI-A-S-HALGL 500 (819)
T ss_pred --------CcccHHHHHHHHhhcc-----hhhH----------HHHHHHHHHHHHHh---CcCcCCCccc-c-c-chHhH
Confidence 1368777666554210 1112 12334444544332 2210100000 0 0 11556
Q ss_pred HHHHhcccceEEEcCC-CcEEEeecCceEEECCCCCCCCCCcEEEEeeeccc---hhhhcccccccCHHHHHhhcCccc
Q 004850 623 AMLAGYFMQVAHLERT-GQYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLT---SRNFIRTVTDVRGEWLIDIAPHYY 697 (727)
Q Consensus 623 ~l~~g~~~nva~~~~~-~~y~~~~~~~~~~ihpsS~l~~~~~~vvy~e~~~t---~~~~~~~~t~i~~~wl~~~~~~~~ 697 (727)
+++.||.++||+++++ +.| .+.+|+.+.++|.|.+.. .+|+|..++..+ ....++.+++|+++||.+.+++.+
T Consensus 501 lla~a~pdria~~r~~~~~y-~l~~G~~~~l~~~~~l~~-~~~l~~a~~~~~~~~~~~~i~~a~~i~~~~~~~~~~~~~ 577 (819)
T TIGR01970 501 LLALAFPDRIAKRRGQPGRY-QLANGRGAVLSAEDALAR-EPWLVAADLGEGQGKTAARILLAAPVDEALLRQVLPDLV 577 (819)
T ss_pred HHhhhChHhheeccCCCCeE-ECCCCCeeEeCCCCcccC-CCeEEEEEeeccCCccccceeeeccCCHHHHHHHhHHHc
Confidence 7889999999997754 457 678889999999999853 699999999744 235788999999999999988764
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.9e-92 Score=827.42 Aligned_cols=563 Identities=32% Similarity=0.486 Sum_probs=486.4
Q ss_pred cCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccc
Q 004850 63 KSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (727)
Q Consensus 63 ~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (727)
..||++.+..+|+.++.+++++++.|+|||||||++++++++.. ... + .+++++|+++++.+++++++++++.
T Consensus 2 ~~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~-~~~-----~-~ilvlqPrR~aA~qia~rva~~l~~ 74 (812)
T PRK11664 2 SSLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHG-GIN-----G-KIIMLEPRRLAARNVAQRLAEQLGE 74 (812)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcC-CcC-----C-eEEEECChHHHHHHHHHHHHHHhCc
Confidence 35999999999999999999999999999999999999999764 111 2 4889999999999999999999999
Q ss_pred cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHh-CCCCEEEE
Q 004850 143 TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKN-RPDLKLVV 221 (727)
Q Consensus 143 ~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~-~~~~~vil 221 (727)
.++..|||.++++.....+++|.++|+|++++++..++.+.++++|||||+|||++++|+++.+++++.+. ++++++|+
T Consensus 75 ~~g~~VGy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlil 154 (812)
T PRK11664 75 KPGETVGYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLI 154 (812)
T ss_pred ccCceEEEEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEE
Confidence 99999999999998877888999999999999999888899999999999999999999999998887653 56899999
Q ss_pred EcCcccHHHHHhhhcCCCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHH
Q 004850 222 MSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITK 301 (727)
Q Consensus 222 ~SATl~~~~~~~~f~~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~ 301 (727)
||||++.+.+++||.+++++.++|+.|||+++|...+..++++..+..++.....+..|+|||||||+++|+.+++.|.+
T Consensus 155 mSATl~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~ 234 (812)
T PRK11664 155 MSATLDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLAS 234 (812)
T ss_pred EecCCCHHHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHH
Confidence 99999998999999999999999999999999998877777654443333333334579999999999999999999986
Q ss_pred HHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccc
Q 004850 302 EITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPR 381 (727)
Q Consensus 302 ~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~ 381 (727)
.. ..++.+++|||+|++++|.++|++|++| ++||||||||||||||||||+||||+|++|...|||.
T Consensus 235 ~~------~~~~~v~~Lhg~l~~~eq~~~~~~~~~G-------~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~ 301 (812)
T PRK11664 235 RV------ASDVLLCPLYGALSLAEQQKAILPAPAG-------RRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPK 301 (812)
T ss_pred hc------cCCceEEEeeCCCCHHHHHHHhccccCC-------CeEEEEecchHHhcccccCceEEEECCCccccccccc
Confidence 32 1368899999999999999999999999 8999999999999999999999999999999999999
Q ss_pred cCccccccccccHhhHHhhhcccCCCCCceEEEecchhhhcccCCCCCCCcccccCchhhHHHHHHcCCCCcccccCCCC
Q 004850 382 VRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDP 461 (727)
Q Consensus 382 ~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~~~~~~~l~~~~~pei~r~~l~~~~L~lk~~~~~~~~~~~~~~~ 461 (727)
+|++.|.++|||+++|.||+|||||+++|.|||||+++++.. |.+++.|||+|+||++++|.++++|+.++..|+|+||
T Consensus 302 ~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~-l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~ 380 (812)
T PRK11664 302 TGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAER-AAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQ 380 (812)
T ss_pred CCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhh-CccCCCCceeccchHHHHHHHHHcCCCCHHhCCCCCC
Confidence 999999999999999999999999999999999999999987 9999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCcCCCCCcchhhhhhccCCCChhhhhHHhhcCCCCChH--HHHHHHHHhcCCCCCCCchHHHH
Q 004850 462 PAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSN--EILSISAMLSVPNCFVRPREAQK 539 (727)
Q Consensus 462 P~~~~i~~a~~~L~~lgald~~~~lT~lG~~l~~lPl~p~~~k~ll~~~~~~c~~--~~l~i~a~ls~~~~f~~~~~~~~ 539 (727)
|+..++.+|++.|+.+||||++|+||++|+.|++||++|++||||+.|..++|.. .++.+||+|+.++. ..
T Consensus 381 P~~~~~~~A~~~L~~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~~~--~~----- 453 (812)
T PRK11664 381 PPAAALAAAKRLLQQLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEPPR--SG----- 453 (812)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccCCC--CC-----
Confidence 9999999999999999999999999999999999999999999999999998764 67778888876532 00
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCchhhHHhhcCChHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCcchHHH
Q 004850 540 AADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNSRDYYVN 619 (727)
Q Consensus 540 ~~~~~~~~~~~~~sD~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~ql~~~l~~~~~~~~~~~~~~~~~~~~ 619 (727)
.+|....+..+. ..|+ +.+..+.+|+.+. .+ .. +.+.
T Consensus 454 ------------~~d~~~~l~~~~--------~~~~----------~~~~~~~~~~~~~---~~----~~------~~~~ 490 (812)
T PRK11664 454 ------------SSDLGVALSRKQ--------PHWQ----------QRAQQLLKRLNVR---GG----EA------DSSL 490 (812)
T ss_pred ------------cccHHHHHHHHH--------HHHH----------HHHHHHHHHHHhh---cc----cC------ChHH
Confidence 245444443222 1332 2334444444321 11 10 1234
Q ss_pred HHHHHHHhcccceEEEcCCCcEEEeecCceEEECCCCCCCCCCcEEEEeeeccch-h--hhcccccccCHHHHHhhcCcc
Q 004850 620 IRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTS-R--NFIRTVTDVRGEWLIDIAPHY 696 (727)
Q Consensus 620 i~~~l~~g~~~nva~~~~~~~y~~~~~~~~~~ihpsS~l~~~~~~vvy~e~~~t~-~--~~~~~~t~i~~~wl~~~~~~~ 696 (727)
+..||++||+++||++++.+.++.+.+|+.+.+||+|.+.. .+|+|+.+++.++ + ..++.+++|+++||.+.+|+.
T Consensus 491 ~~~~la~aypdriA~~r~~~~~~~l~~G~~a~l~~~~~l~~-~~~lv~a~~~~~~~~~~~ri~~a~~l~~~~l~~~~~~~ 569 (812)
T PRK11664 491 IAPLLALAFPDRIARRRGQDGRYQLANGMGAMLDADDALSR-HEWLIAPLLLQGSASPDARILLALPLDIDELVQRCPQL 569 (812)
T ss_pred HHHHHHHHCHHHHhhhcCCCCeEEeeCCCeEEECCCCcccC-CCeEEEEEhhccCccccceeeEeeccCHHHHHHHHHHh
Confidence 78899999999999977554455788999999999999953 6999999997653 3 468899999999999999877
Q ss_pred c
Q 004850 697 Y 697 (727)
Q Consensus 697 ~ 697 (727)
+
T Consensus 570 ~ 570 (812)
T PRK11664 570 V 570 (812)
T ss_pred c
Confidence 5
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=1.7e-65 Score=563.65 Aligned_cols=628 Identities=29% Similarity=0.469 Sum_probs=526.5
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccH
Q 004850 53 QRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSV 132 (727)
Q Consensus 53 ~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v 132 (727)
+.+.+++..+..+|+.....+|+.++.++++++|.|+|||||||++-+++++.. +.+.... ...++.+||+++.++++
T Consensus 365 ~e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~-~~ns~g~-~~na~v~qprrisaisi 442 (1282)
T KOG0921|consen 365 EALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESF-LENSNGA-SFNAVVSQPRRISAISL 442 (1282)
T ss_pred cchhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHH-hhccccc-cccceeccccccchHHH
Confidence 456678889999999999999999999999999999999999999999999886 3332211 22477899999999999
Q ss_pred HHHHHHhccccccceeceeeeecccccc-CccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHH
Q 004850 133 SRRVAEEMDVTIGEEVGYSIRFEDCSSA-RTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVL 211 (727)
Q Consensus 133 ~~~v~~~~~~~~~~~vg~~~~~~~~~~~-~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~ 211 (727)
+++++.+.+..+++.|||.+|++..... ...|.++|-|.+++.+-+. +...+++|+||.|+|..++|+++-+++.+.
T Consensus 443 aerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g--lrg~sh~i~deiherdv~~dfll~~lr~m~ 520 (1282)
T KOG0921|consen 443 AERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG--LRGISHVIIDEIHERDVDTDFVLIVLREMI 520 (1282)
T ss_pred HHHHHHhhHHhhcccccccccccccccccccceeeeccchhhhhhhhc--ccccccccchhhhhhccchHHHHHHHHhhh
Confidence 9999999999999999999999988764 5678899999999987764 789999999999999999999999999999
Q ss_pred HhCCCCEEEEEcCcccHHHHHhhhcCCCeeeeCCCccceeeeeccC--------------------------CcccH---
Q 004850 212 KNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQE--------------------------PERDY--- 262 (727)
Q Consensus 212 ~~~~~~~vil~SATl~~~~~~~~f~~~p~i~v~g~~~~v~~~y~~~--------------------------~~~~~--- 262 (727)
...+++.+++||||+|...|..||..+|.+.+.|+++|+..+|+.. +..++
T Consensus 521 ~ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n 600 (1282)
T KOG0921|consen 521 STYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRN 600 (1282)
T ss_pred ccchhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccc
Confidence 9889999999999999999999999999999999999998877531 00000
Q ss_pred -------------------------HHHHHHHH-HHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEE
Q 004850 263 -------------------------LEAAIRTV-VQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVV 316 (727)
Q Consensus 263 -------------------------~~~~~~~l-~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~ 316 (727)
.-.+++.+ ..|....-+|-||||+|++++|..++.+|.... ...+...+.++
T Consensus 601 ~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~--~fg~~~~y~il 678 (1282)
T KOG0921|consen 601 MNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQ--EFGQANKYEIL 678 (1282)
T ss_pred cccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhh--hhccchhcccc
Confidence 00111222 223333347899999999999999999997642 22234568899
Q ss_pred EecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhh
Q 004850 317 PLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKAS 396 (727)
Q Consensus 317 ~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~ 396 (727)
++|+.+...+|.++|++.+.| ..|+|++||+||++|||++++||||.+..+.+.|-....+....++|.|+-+
T Consensus 679 p~Hsq~~~~eqrkvf~~~p~g-------v~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn 751 (1282)
T KOG0921|consen 679 PLHSQLTSQEQRKVFEPVPEG-------VTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTN 751 (1282)
T ss_pred cchhhcccHhhhhccCccccc-------ccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccc
Confidence 999999999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCCceEEEecchhhhcccCCCCCCCcccccCchhhHHHHHHcCCCCcccc--cCCCCCcHHHHHHHHHHH
Q 004850 397 AHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF--DFMDPPAPETLMRALEVL 474 (727)
Q Consensus 397 ~~qR~GRaGR~~~G~~~~L~t~~~~~~~l~~~~~pei~r~~l~~~~L~lk~~~~~~~~~~--~~~~~P~~~~i~~a~~~L 474 (727)
-+||.||+||+++|.||++.+...|+. +.+...||+.|.++.+..|.+|.+.+..+..| ..+.||+.+++..+-..|
T Consensus 752 ~eqr~gr~grvR~G~~f~lcs~arF~~-l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l 830 (1282)
T KOG0921|consen 752 LEQRKGRAGRVRPGFCFHLCSRARFEA-LEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVL 830 (1282)
T ss_pred hHhhcccCceecccccccccHHHHHHH-HHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHH
Confidence 999999999999999999999999987 99999999999999999999998877666655 678999999999999999
Q ss_pred HHcCCcCCCCCcchhhhhhccCCCChhhhhHHhhcCCCCChHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHhCC----
Q 004850 475 NYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGH---- 550 (727)
Q Consensus 475 ~~lgald~~~~lT~lG~~l~~lPl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~~~~---- 550 (727)
..++++|.++.+|++|+.++.+|+.|+++||++.+..++|.+-|+.+|+.++...+|..-..........++.|++
T Consensus 831 ~~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~g~kfs 910 (1282)
T KOG0921|consen 831 REMGALDANDELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAGNKFS 910 (1282)
T ss_pred HHhhhhhccCcccchhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchhhccccccc
Confidence 9999999999999999999999999999999999999999999999999999888776433222222233344443
Q ss_pred --CCCCHHHHHHHHHHHhhcCCchhhHHhhcCChHHHHHHHHHHHHHHHHHHHcCCccc-----CCCCCC-cchHHHHHH
Q 004850 551 --IDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLC-----SNDFNS-RDYYVNIRK 622 (727)
Q Consensus 551 --~~sD~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~ql~~~l~~~~~~~~-----~~~~~~-~~~~~~i~~ 622 (727)
..+||.+.+..++.|..+...++||..++++...|......+.|+...|+.++++-- +.+.+. +.....++.
T Consensus 911 dhva~~~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~fpe~~~~~~~v~~ng~d~~l~~~~~ 990 (1282)
T KOG0921|consen 911 DHVAIVSVIQGYREAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLRQCSFPEDILFDISVNVNGPDRELNLMRS 990 (1282)
T ss_pred cchhhhhhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHHhccCccccccceeeccCCCCchhHHHHH
Confidence 345666666666777666667899999999999999999999999999997765431 111111 223445667
Q ss_pred HHHHhcccceEEEcCCCcEEEeecCceEEECCCCCCC--------CCCcEEEEeeeccchhhhcccccccCHHHHHhhcC
Q 004850 623 AMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLD--------HKPEWVIYNEYVLTSRNFIRTVTDVRGEWLIDIAP 694 (727)
Q Consensus 623 ~l~~g~~~nva~~~~~~~y~~~~~~~~~~ihpsS~l~--------~~~~~vvy~e~~~t~~~~~~~~t~i~~~wl~~~~~ 694 (727)
.||+++|||+|.+....+-+|...+ ...||-.|++. .+.+|+||.|.++|...-.+..|.|+|..|+.++-
T Consensus 991 lL~~~lypn~~~y~ekrkvLtTe~~-~alihk~Svncp~S~qdM~fPsPFFVFGEKIRTRAIS~K~MslVsPLQLLLF~S 1069 (1282)
T KOG0921|consen 991 LLVMALYPNVAYYVEKRKVLTTEQS-SALIHKYSVNCPNSRQEMDFPSPFFVFGEKIRTRAISCKQMSLVSPLQLLLFGS 1069 (1282)
T ss_pred HHHhhcCCccceeccceeEEeecch-hhhhhhhcccCCCcccccCCCCceeeechhhhhheecccCccccChHHHhhhhh
Confidence 7899999999998877666565544 46677777662 35689999999999988899999999999998875
Q ss_pred c
Q 004850 695 H 695 (727)
Q Consensus 695 ~ 695 (727)
.
T Consensus 1070 r 1070 (1282)
T KOG0921|consen 1070 R 1070 (1282)
T ss_pred h
Confidence 4
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1e-59 Score=539.33 Aligned_cols=397 Identities=22% Similarity=0.297 Sum_probs=307.1
Q ss_pred HHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcC------ccCCC-cc-ccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 69 QQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEG------VDIET-PD-RRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 69 ~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~------~~~~~-~~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
.+|+++++.+.+|++++++|+|||||||++||++++. ..... .. ......+++++|++..+.+++.++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999988652 11100 00 1123458889999998888888887765
Q ss_pred cccccceeceeeeecccccc-------CccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHh
Q 004850 141 DVTIGEEVGYSIRFEDCSSA-------RTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKN 213 (727)
Q Consensus 141 ~~~~~~~vg~~~~~~~~~~~-------~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~ 213 (727)
+......+...+++++.... ...+.+.|++. ....+.++++|||||||||+...|.++.+++++...
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L------~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~ 320 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL------TLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK 320 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc------cccccccCCEEEccccccCccchhHHHHHHHHhhhh
Confidence 44221122234444443321 23455667653 234589999999999999999999999999877544
Q ss_pred CCCCEEEEEcCccc--HHHHHhhhcCCCeeeeCCCc-cceeeeeccCCc-----ccHHHHHHHHHHHHhhc---CCCCCE
Q 004850 214 RPDLKLVVMSATLE--AEKFQGYFYGAPLMKVPGRL-HPVEIFYTQEPE-----RDYLEAAIRTVVQIHMC---EPSGDI 282 (727)
Q Consensus 214 ~~~~~vil~SATl~--~~~~~~~f~~~p~i~v~g~~-~~v~~~y~~~~~-----~~~~~~~~~~l~~i~~~---~~~g~i 282 (727)
..|+++||||++ .+.+++||.+++++.++|+. +||+++|..... .++.+.....+...+.. ...|++
T Consensus 321 --~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~i 398 (675)
T PHA02653 321 --IRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSG 398 (675)
T ss_pred --cCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcE
Confidence 348999999995 56788999999999999985 999999986542 12222222222232221 245799
Q ss_pred EEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCC-CCCCCCCCCCCcEEEEecCccccCccc
Q 004850 283 LVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPA-PPPSKEGGPPGRKIVVSTNIAETSLTI 361 (727)
Q Consensus 283 LVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~-~~g~~~~~~~~~kvlvaTniAe~gitI 361 (727)
|||+||+++|+.+++.|.+.. +++.+.+|||+|++.++ +++.| ++| +++||||||||||||||
T Consensus 399 LVFlpg~~ei~~l~~~L~~~~-------~~~~v~~LHG~Lsq~eq--~l~~ff~~g-------k~kILVATdIAERGIDI 462 (675)
T PHA02653 399 IVFVASVSQCEEYKKYLEKRL-------PIYDFYIIHGKVPNIDE--ILEKVYSSK-------NPSIIISTPYLESSVTI 462 (675)
T ss_pred EEEECcHHHHHHHHHHHHhhc-------CCceEEeccCCcCHHHH--HHHHHhccC-------ceeEEeccChhhccccc
Confidence 999999999999999998642 36889999999998643 33444 566 89999999999999999
Q ss_pred CCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCCCceEEEecchhhhcccCCCCCCCcccccC---c
Q 004850 362 DGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSN---L 438 (727)
Q Consensus 362 p~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~~~~~~~l~~~~~pei~r~~---l 438 (727)
|||++|||+|++|.+. |..++ ..|+|+++|+||+|||||+++|.||+||+++++ .| |.|.+ |
T Consensus 463 p~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~--------~p-I~ri~~~~L 527 (675)
T PHA02653 463 RNATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLL--------KP-IKRIDSEFL 527 (675)
T ss_pred cCeeEEEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHHh--------HH-HHHHhHHHH
Confidence 9999999999987663 44444 459999999999999999999999999999874 23 55555 8
Q ss_pred hhhHHHHHHcCCCCcccccCCCCCcHHHHHHHHHHHHHcCCcCCCCCcchh--hhhhccCCCChhhhhHHhhcCC
Q 004850 439 ANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEM--GEKMSEFPLDPQMSKMLVESPK 511 (727)
Q Consensus 439 ~~~~L~lk~~~~~~~~~~~~~~~P~~~~i~~a~~~L~~lgald~~~~lT~l--G~~l~~lPl~p~~~k~ll~~~~ 511 (727)
..++|++|+||++.. .+.|++||+++++.+|++.|..+||+|+ +||.+ |+.|+.+ ++||++++|..
T Consensus 528 ~~~vL~lk~~g~~~~-~~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~ 595 (675)
T PHA02653 528 HNYILYAKYFNLTLP-EDLFVIPSNLDRLRKTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGI 595 (675)
T ss_pred HHHHHHHHHcCCCCc-ccccCCCCCHHHHHHHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccH
Confidence 999999999999654 4559999999999999999999998865 79999 9999999 99999997743
No 14
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-50 Score=409.04 Aligned_cols=342 Identities=18% Similarity=0.196 Sum_probs=285.7
Q ss_pred CcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEE
Q 004850 40 NSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMI 119 (727)
Q Consensus 40 ~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i 119 (727)
++...+|.++++.+.+.+.+++.++..|+++|.+.||.+..|++|++.++||||||.+|..|+++.. +..+.....+++
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~L-L~~p~~~~~lVL 135 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRL-LQEPKLFFALVL 135 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHH-HcCCCCceEEEe
Confidence 5567789999999999999999999999999999999999999999999999999999999999887 666555678889
Q ss_pred EEcccchhhhccHHHHHHHhccccccceeceeeeecccc--ccCccccccChHHHHHHHhccc--cccCCeeEEeeccCc
Q 004850 120 ACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDP--LLERYKVIVLDEAHE 195 (727)
Q Consensus 120 ~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~--~~~~~i~~lT~G~l~r~~~~~~--ll~~~~~lIlDEahe 195 (727)
.||++++.|+..+++.+....+..+...||......... ..+..|.++|||++.+++.... .+.+.+++|+||||
T Consensus 136 tPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD- 214 (476)
T KOG0330|consen 136 TPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD- 214 (476)
T ss_pred cCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-
Confidence 999999999999999999999988888888654333222 3467788999999999998444 38999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc--HHHHHhhhcCCCe-eeeCCCc---cceeeeeccCCcccHHHHHHHH
Q 004850 196 RTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYFYGAPL-MKVPGRL---HPVEIFYTQEPERDYLEAAIRT 269 (727)
Q Consensus 196 r~~~~d~ll~ll~~l~~~~~~~~vil~SATl~--~~~~~~~f~~~p~-i~v~g~~---~~v~~~y~~~~~~~~~~~~~~~ 269 (727)
|.+++||.-.+=+.+...++++|++++||||. +.++..--.+.|+ +.++.+- ..++++|+..+..++...++..
T Consensus 215 rlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~l 294 (476)
T KOG0330|consen 215 RLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYL 294 (476)
T ss_pred hhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHH
Confidence 78888875544444333445899999999995 4555544344554 3333321 2478889988877765554443
Q ss_pred HHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEE
Q 004850 270 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 349 (727)
Q Consensus 270 l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvl 349 (727)
+ +....++++||++++...+.++-.|+.. ++..++|||.|++..|..+|+.|++| .+.|+
T Consensus 295 l----~e~~g~s~iVF~~t~~tt~~la~~L~~l---------g~~a~~LhGqmsq~~Rlg~l~~Fk~~-------~r~iL 354 (476)
T KOG0330|consen 295 L----NELAGNSVIVFCNTCNTTRFLALLLRNL---------GFQAIPLHGQMSQSKRLGALNKFKAG-------ARSIL 354 (476)
T ss_pred H----HhhcCCcEEEEEeccchHHHHHHHHHhc---------CcceecccchhhHHHHHHHHHHHhcc-------CCcEE
Confidence 3 2344579999999999999999999875 79999999999999999999999999 89999
Q ss_pred EecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhh
Q 004850 350 VSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (727)
Q Consensus 350 vaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~ 421 (727)
+|||||+||+|||.|++|||||+ |.+..+|+||+|||||+ ++|+++.|+|..+.
T Consensus 355 v~TDVaSRGLDip~Vd~VVNyDi------------------P~~skDYIHRvGRtaRaGrsG~~ItlVtqyDv 409 (476)
T KOG0330|consen 355 VCTDVASRGLDIPHVDVVVNYDI------------------PTHSKDYIHRVGRTARAGRSGKAITLVTQYDV 409 (476)
T ss_pred EecchhcccCCCCCceEEEecCC------------------CCcHHHHHHHcccccccCCCcceEEEEehhhh
Confidence 99999999999999999999999 99999999999999999 99999999998443
No 15
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-46 Score=410.50 Aligned_cols=343 Identities=17% Similarity=0.222 Sum_probs=273.9
Q ss_pred CCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCcc-----CCCccccCceEE
Q 004850 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVD-----IETPDRRRKMMI 119 (727)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~-----~~~~~~~~~~~i 119 (727)
.|+.+++++....+++..++..|+++|.+.+|.++.|++++.++.||||||..|..|.+.... ......+..+++
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 699999999999999999999999999999999999999999999999999999877664432 112334456778
Q ss_pred EEcccchhhhccHHHHHHHhccccccceeceeeeeccccc--cCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcC
Q 004850 120 ACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSS--ARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHER 196 (727)
Q Consensus 120 ~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~--~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher 196 (727)
+||++++.|+..++..+............|......+... ..-.|.+.|||++..++....+ |++++++|||||| |
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD-r 250 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD-R 250 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-h
Confidence 8999998888888888877766555556665433332222 2456789999999999988776 9999999999999 8
Q ss_pred hhhHHHHHHHHHHHHHh-CCCCEEEEEcCccc--HHHHHhhhcCCCeeeeCC-C-----ccceeeeeccCCcccHHHHHH
Q 004850 197 TLATDVLFGLLKEVLKN-RPDLKLVVMSATLE--AEKFQGYFYGAPLMKVPG-R-----LHPVEIFYTQEPERDYLEAAI 267 (727)
Q Consensus 197 ~~~~d~ll~ll~~l~~~-~~~~~vil~SATl~--~~~~~~~f~~~p~i~v~g-~-----~~~v~~~y~~~~~~~~~~~~~ 267 (727)
|++++|--++-+.+.+. ++..|++++|||++ +..++.-|.+.|+-..-| . .+.+.+....+....+...+.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999655555555555 45678999999997 456665554455433322 2 234555555555444444444
Q ss_pred HHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcE
Q 004850 268 RTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRK 347 (727)
Q Consensus 268 ~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~k 347 (727)
..+..+. ....|++||||.++..|+.+...++.. ++.+.+|||+.+|.+|..+++.|++| ...
T Consensus 331 ~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~---------~~~a~~iHGd~sQ~eR~~~L~~FreG-------~~~ 393 (519)
T KOG0331|consen 331 KLLEDIS-SDSEGKVIIFCETKRTCDELARNLRRK---------GWPAVAIHGDKSQSERDWVLKGFREG-------KSP 393 (519)
T ss_pred HHHHHHh-ccCCCcEEEEecchhhHHHHHHHHHhc---------CcceeeecccccHHHHHHHHHhcccC-------Ccc
Confidence 4333333 567889999999999999999999874 58899999999999999999999999 899
Q ss_pred EEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhcc
Q 004850 348 IVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (727)
Q Consensus 348 vlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~~ 423 (727)
||||||||+||||||||++||||++ |-+.++|+||+|||||+ +.|.+|.||+..++..
T Consensus 394 vLVATdVAaRGLDi~dV~lVInydf------------------P~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 394 VLVATDVAARGLDVPDVDLVINYDF------------------PNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKL 452 (519)
T ss_pred eEEEcccccccCCCccccEEEeCCC------------------CCCHHHHHhhcCccccCCCCceEEEEEeHHHHHH
Confidence 9999999999999999999999999 99999999999999998 8899999999887754
No 16
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.3e-45 Score=411.03 Aligned_cols=338 Identities=20% Similarity=0.277 Sum_probs=275.7
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccC-ceEEEEc
Q 004850 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRR-KMMIACT 122 (727)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~-~~~i~~t 122 (727)
.+|+++++++.+.+.+.+.++..++++|...||.+..|+++++.++||||||.+|..++++........... .++++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 569999999999999999999999999999999999999999999999999999999999875321111111 6888999
Q ss_pred ccchhhhccHHHHHHHhc-cccccceeceeeeeccccc--cCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcChh
Q 004850 123 QPRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFEDCSS--ARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTL 198 (727)
Q Consensus 123 ~p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~~~~~~~--~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~~ 198 (727)
++++.|+..++..++... +..+...+|......+... ....|.+.|||++++++....+ +.+++++|||||| +++
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-rmL 187 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-RML 187 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-hhh
Confidence 999999999999999987 5666666664321111111 1478999999999999988765 9999999999999 689
Q ss_pred hHHHHHHHHHHHHHhCCCCEEEEEcCcccH--HHHHhhhcCCC-eeeeC--C---CccceeeeeccCCcccHHHHHHHHH
Q 004850 199 ATDVLFGLLKEVLKNRPDLKLVVMSATLEA--EKFQGYFYGAP-LMKVP--G---RLHPVEIFYTQEPERDYLEAAIRTV 270 (727)
Q Consensus 199 ~~d~ll~ll~~l~~~~~~~~vil~SATl~~--~~~~~~f~~~p-~i~v~--g---~~~~v~~~y~~~~~~~~~~~~~~~l 270 (727)
+++|.-++-+.+....++.|+++||||++. ..++..+...| .+.+. . ....++++|......+ .....+
T Consensus 188 d~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~---~k~~~L 264 (513)
T COG0513 188 DMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE---EKLELL 264 (513)
T ss_pred cCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH---HHHHHH
Confidence 997665555554444448999999999964 44554444444 44444 1 2346888888877654 223444
Q ss_pred HHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEE
Q 004850 271 VQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVV 350 (727)
Q Consensus 271 ~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlv 350 (727)
..+......+.+|||++++..++.++..|... ++.+..|||+|+|++|.++++.|++| ..+|+|
T Consensus 265 ~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~---------g~~~~~lhG~l~q~~R~~~l~~F~~g-------~~~vLV 328 (513)
T COG0513 265 LKLLKDEDEGRVIVFVRTKRLVEELAESLRKR---------GFKVAALHGDLPQEERDRALEKFKDG-------ELRVLV 328 (513)
T ss_pred HHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC---------CCeEEEecCCCCHHHHHHHHHHHHcC-------CCCEEE
Confidence 55555556668999999999999999999874 69999999999999999999999999 899999
Q ss_pred ecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchh
Q 004850 351 STNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEK 419 (727)
Q Consensus 351 aTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~ 419 (727)
|||||+||||||+|.+|||||+ |.+.++|+||+|||||+ +.|.++.|+++.
T Consensus 329 aTDvaaRGiDi~~v~~VinyD~------------------p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 329 ATDVAARGLDIPDVSHVINYDL------------------PLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred EechhhccCCccccceeEEccC------------------CCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 9999999999999999999999 99999999999999999 899999999974
No 17
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.2e-44 Score=378.67 Aligned_cols=365 Identities=17% Similarity=0.187 Sum_probs=291.7
Q ss_pred cchhhhhhhcccCCCCCCCCcCCCCcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhh
Q 004850 16 DETSVSAKLVKTNGVGPGAMMNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKT 95 (727)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKT 95 (727)
.+++.+|....++-...-... .-+.++.+|++.+|+..+.+++..-++..++++|...||...++.+++.+++||||||
T Consensus 218 Em~~rdwri~redynis~kg~-~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGkt 296 (673)
T KOG0333|consen 218 EMTERDWRIFREDYNISIKGG-RLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKT 296 (673)
T ss_pred hcCCccceeeecceeeeecCC-CCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCcc
Confidence 455667777777655433332 3356788899999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHhcCccC--------CCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeecc--ccccCcccc
Q 004850 96 TQIPQFVLEGVDI--------ETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED--CSSARTVLK 165 (727)
Q Consensus 96 t~~~~~ll~~~~~--------~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~--~~~~~~~i~ 165 (727)
.+|+.+++.-..- ....++.++++.||++++.++......+++.+++.+...||+...-+. ..+..+.|.
T Consensus 297 aaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiv 376 (673)
T KOG0333|consen 297 AAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIV 376 (673)
T ss_pred ccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceee
Confidence 9998766543211 112235577889999999999888889999999888888887654444 334578899
Q ss_pred ccChHHHHHHHhcccc-ccCCeeEEeeccCcChhhHHHHHHHHHHHHHhC-------------------------CCCEE
Q 004850 166 YLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-------------------------PDLKL 219 (727)
Q Consensus 166 ~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~-------------------------~~~~v 219 (727)
+.|||+++..+-.+-+ ++++.++|+|||| ++++++|--+..+.+.... .-+|+
T Consensus 377 iatPgrLid~Lenr~lvl~qctyvvldead-rmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT 455 (673)
T KOG0333|consen 377 IATPGRLIDSLENRYLVLNQCTYVVLDEAD-RMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQT 455 (673)
T ss_pred ecCchHHHHHHHHHHHHhccCceEeccchh-hhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEE
Confidence 9999999999887765 8999999999999 7999988555555443211 01689
Q ss_pred EEEcCcccH--HHHH-hhhcCCCeeeeC--CCccc-eeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHH
Q 004850 220 VVMSATLEA--EKFQ-GYFYGAPLMKVP--GRLHP-VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIE 293 (727)
Q Consensus 220 il~SATl~~--~~~~-~~f~~~p~i~v~--g~~~~-v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~ 293 (727)
++|||||++ +.++ .||.++.++.+. |+..| +++........++... +..+..+....+|+||+|+++.|+
T Consensus 456 ~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kk----L~eil~~~~~ppiIIFvN~kk~~d 531 (673)
T KOG0333|consen 456 VMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKK----LIEILESNFDPPIIIFVNTKKGAD 531 (673)
T ss_pred EEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHH----HHHHHHhCCCCCEEEEEechhhHH
Confidence 999999964 5565 566554444443 34443 5666555555555443 444444445668999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCc
Q 004850 294 DACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFA 373 (727)
Q Consensus 294 ~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~ 373 (727)
.+++.|.+. ++.++.|||+-++++|..++..|+.| ...|+||||||+||||||||.+||||++
T Consensus 532 ~lAk~LeK~---------g~~~~tlHg~k~qeQRe~aL~~fr~~-------t~dIlVaTDvAgRGIDIpnVSlVinydm- 594 (673)
T KOG0333|consen 532 ALAKILEKA---------GYKVTTLHGGKSQEQRENALADFREG-------TGDILVATDVAGRGIDIPNVSLVINYDM- 594 (673)
T ss_pred HHHHHHhhc---------cceEEEeeCCccHHHHHHHHHHHHhc-------CCCEEEEecccccCCCCCccceeeecch-
Confidence 999999874 69999999999999999999999998 7899999999999999999999999999
Q ss_pred cceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhh
Q 004850 374 KQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (727)
Q Consensus 374 k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~ 420 (727)
+.|.++|.||+|||||+ ..|++++|+|+++
T Consensus 595 -----------------aksieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 595 -----------------AKSIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred -----------------hhhHHHHHHHhccccccccCceeEEEeccch
Confidence 89999999999999999 7899999999877
No 18
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-43 Score=368.15 Aligned_cols=358 Identities=18% Similarity=0.196 Sum_probs=278.3
Q ss_pred CCCCC--CCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCcc---C-CCccccCceE
Q 004850 45 RWNGK--PYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVD---I-ETPDRRRKMM 118 (727)
Q Consensus 45 ~f~~~--~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~---~-~~~~~~~~~~ 118 (727)
.|+++ +|++++.+.+...|+-..|++|...||.+..+++|++-++||||||.+|..|+++-.- - ..+....+++
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 46665 4669999999999999999999999999999999999999999999999988876430 0 1111123678
Q ss_pred EEEcccchhhhccHHHHHHHh-ccccccceeceeeeeccc---cccCccccccChHHHHHHHhccc-c--ccCCeeEEee
Q 004850 119 IACTQPRRVAAMSVSRRVAEE-MDVTIGEEVGYSIRFEDC---SSARTVLKYLTDGMLLREAMTDP-L--LERYKVIVLD 191 (727)
Q Consensus 119 i~~t~p~~~~~~~v~~~v~~~-~~~~~~~~vg~~~~~~~~---~~~~~~i~~lT~G~l~r~~~~~~-l--l~~~~~lIlD 191 (727)
|.||+++..|+.+|+..+... ........||...-.++. ...+..|.++|||++..++.... . +.+.++||||
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 899999999999999888765 344444556653222222 23467799999999999887633 3 4489999999
Q ss_pred ccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc--HHHHHhhhcCCCee-eeCCCc---cc--eeeeeccCCcccHH
Q 004850 192 EAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYFYGAPLM-KVPGRL---HP--VEIFYTQEPERDYL 263 (727)
Q Consensus 192 Eaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~--~~~~~~~f~~~p~i-~v~g~~---~~--v~~~y~~~~~~~~~ 263 (727)
||| |.++++|.-.+-..+.....++++-|||||+. ++.+.......|+- .+.... .| +..+|..++...++
T Consensus 165 EAD-rLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~ 243 (567)
T KOG0345|consen 165 EAD-RLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKL 243 (567)
T ss_pred chH-hHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHH
Confidence 999 78888875544444333334789999999995 56677666666653 333222 34 78899988877766
Q ss_pred HHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCC
Q 004850 264 EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGP 343 (727)
Q Consensus 264 ~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~ 343 (727)
..+++.+ .+...+++|||+||++.++.....+.... +...++++||.|++..|.++++.|.+.
T Consensus 244 ~~lv~~L----~~~~~kK~iVFF~TCasVeYf~~~~~~~l-------~~~~i~~iHGK~~q~~R~k~~~~F~~~------ 306 (567)
T KOG0345|consen 244 SQLVHLL----NNNKDKKCIVFFPTCASVEYFGKLFSRLL-------KKREIFSIHGKMSQKARAKVLEAFRKL------ 306 (567)
T ss_pred HHHHHHH----hccccccEEEEecCcchHHHHHHHHHHHh-------CCCcEEEecchhcchhHHHHHHHHHhc------
Confidence 5555444 33567789999999999999999988753 478999999999999999999999886
Q ss_pred CCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecch--hh
Q 004850 344 PGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTE--KS 420 (727)
Q Consensus 344 ~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~--~~ 420 (727)
...|++|||||+||||||||+|||++|. |.+.++++||+|||||. +.|.++.|..+ .+
T Consensus 307 -~~~vl~~TDVaARGlDip~iD~VvQ~Dp------------------P~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~a 367 (567)
T KOG0345|consen 307 -SNGVLFCTDVAARGLDIPGIDLVVQFDP------------------PKDPSSFVHRCGRTARAGREGNAIVFLNPREEA 367 (567)
T ss_pred -cCceEEeehhhhccCCCCCceEEEecCC------------------CCChhHHHhhcchhhhccCccceEEEecccHHH
Confidence 6789999999999999999999999998 99999999999999999 88988877654 45
Q ss_pred hcccCCCCCCCcccccCch
Q 004850 421 FNNDLQPQTYPEILRSNLA 439 (727)
Q Consensus 421 ~~~~l~~~~~pei~r~~l~ 439 (727)
|-..|.-...|++.+.+.+
T Consensus 368 YveFl~i~~~v~le~~~~e 386 (567)
T KOG0345|consen 368 YVEFLRIKGKVELERIDTE 386 (567)
T ss_pred HHHHHHhcCccchhhhccc
Confidence 5555666667777665544
No 19
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.3e-44 Score=374.94 Aligned_cols=338 Identities=20% Similarity=0.261 Sum_probs=270.7
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCc--cccCceEEEE
Q 004850 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETP--DRRRKMMIAC 121 (727)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~--~~~~~~~i~~ 121 (727)
.+|.+++||..+.+.+...|+..|+++|...||..+-|++++.++.||||||.+|..|+++...+... ...+.++++|
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~P 260 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVP 260 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEec
Confidence 37999999999999999999999999999999999999999999999999999999999988744431 2345678899
Q ss_pred cccchhhhccHHHHHHHhccccccceecee-eeeccc-cccCccccccChHHHHHHHhcccc--ccCCeeEEeeccCcCh
Q 004850 122 TQPRRVAAMSVSRRVAEEMDVTIGEEVGYS-IRFEDC-SSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAHERT 197 (727)
Q Consensus 122 t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~-~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~l--l~~~~~lIlDEaher~ 197 (727)
|+++.+|+.+|.+.+++...+.++-.||+- ++.... ......|++.|||++.+++...+. +.++.++|||||| |+
T Consensus 261 TRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-RM 339 (691)
T KOG0338|consen 261 TRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-RM 339 (691)
T ss_pred cHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-HH
Confidence 999999999999999999999988888753 222222 224678999999999999988774 8999999999999 77
Q ss_pred hhHHHHHHHHHHHHHhCC-CCEEEEEcCccc--HHHHHhhhcCCCe-eeeCCC---ccceeeeeccC-CcccHH-HHH-H
Q 004850 198 LATDVLFGLLKEVLKNRP-DLKLVVMSATLE--AEKFQGYFYGAPL-MKVPGR---LHPVEIFYTQE-PERDYL-EAA-I 267 (727)
Q Consensus 198 ~~~d~ll~ll~~l~~~~~-~~~vil~SATl~--~~~~~~~f~~~p~-i~v~g~---~~~v~~~y~~~-~~~~~~-~~~-~ 267 (727)
++.+| -+.++++++..| ++|++||||||. +..++..-.+.|+ |.+... ...+.+-|+.. |.++-. ++. .
T Consensus 340 LeegF-ademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~ 418 (691)
T KOG0338|consen 340 LEEGF-ADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLA 418 (691)
T ss_pred HHHHH-HHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHH
Confidence 77664 455666666554 789999999995 4566666555554 333321 12233444322 222211 111 2
Q ss_pred HHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcE
Q 004850 268 RTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRK 347 (727)
Q Consensus 268 ~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~k 347 (727)
.++.. .-...++||+.+++.++.+.-+|--. ++.+.-|||+|+|.+|...++.|+++ ...
T Consensus 419 ~l~~r----tf~~~~ivFv~tKk~AHRl~IllGLl---------gl~agElHGsLtQ~QRlesL~kFk~~-------eid 478 (691)
T KOG0338|consen 419 SLITR----TFQDRTIVFVRTKKQAHRLRILLGLL---------GLKAGELHGSLTQEQRLESLEKFKKE-------EID 478 (691)
T ss_pred HHHHH----hcccceEEEEehHHHHHHHHHHHHHh---------hchhhhhcccccHHHHHHHHHHHHhc-------cCC
Confidence 22222 22457999999999999887766542 68899999999999999999999998 899
Q ss_pred EEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhh
Q 004850 348 IVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (727)
Q Consensus 348 vlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~ 421 (727)
|+||||||+|||||+||..||||.+ |.+.+.|+||+|||+|+ +.|..++|..+.+-
T Consensus 479 vLiaTDvAsRGLDI~gV~tVINy~m------------------P~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dR 535 (691)
T KOG0338|consen 479 VLIATDVASRGLDIEGVQTVINYAM------------------PKTIEHYLHRVGRTARAGRAGRSVTLVGESDR 535 (691)
T ss_pred EEEEechhhccCCccceeEEEeccC------------------chhHHHHHHHhhhhhhcccCcceEEEeccccH
Confidence 9999999999999999999999999 99999999999999999 89999999998754
No 20
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.6e-43 Score=342.74 Aligned_cols=343 Identities=17% Similarity=0.243 Sum_probs=281.2
Q ss_pred cccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEE
Q 004850 41 SLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA 120 (727)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~ 120 (727)
..+.+|+++++++++.+.+-.-|+-.|..+|+..++.|..|++|+..+.+|+|||..|..-+++..++.... .+.+++.
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~-tQ~lils 102 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRE-TQALILS 102 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccce-eeEEEec
Confidence 345689999999999999999999999999999999999999999999999999999887777666554422 3467788
Q ss_pred EcccchhhhccHHHHHHHhccccccceeceeeeeccccc--cCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcCh
Q 004850 121 CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSS--ARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERT 197 (727)
Q Consensus 121 ~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~--~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~ 197 (727)
||++++.|+..+...++..++..+...+|...-.++... ....++..|||+..+++..+.+ -..+++|||||||+ +
T Consensus 103 PTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe-m 181 (400)
T KOG0328|consen 103 PTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE-M 181 (400)
T ss_pred ChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHH-H
Confidence 999999999999999999998888777776543333322 3566778999999999888776 78899999999997 5
Q ss_pred hhHHHHHHHHHHHHH-hCCCCEEEEEcCcccHH--HHHhhhcCCCeeeeCCC----ccceeeeeccCCcccHHHHHHHHH
Q 004850 198 LATDVLFGLLKEVLK-NRPDLKLVVMSATLEAE--KFQGYFYGAPLMKVPGR----LHPVEIFYTQEPERDYLEAAIRTV 270 (727)
Q Consensus 198 ~~~d~ll~ll~~l~~-~~~~~~vil~SATl~~~--~~~~~f~~~p~i~v~g~----~~~v~~~y~~~~~~~~~~~~~~~l 270 (727)
++.++ -+.+-++.+ ..|+.|++++|||++.+ ...++|...|+-....+ ...+++||......++ ..+++
T Consensus 182 L~kgf-k~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Eew---KfdtL 257 (400)
T KOG0328|consen 182 LNKGF-KEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEW---KFDTL 257 (400)
T ss_pred HHhhH-HHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhh---hHhHH
Confidence 66644 333333333 45599999999999754 34466666666443332 3458899988766553 34556
Q ss_pred HHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEE
Q 004850 271 VQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVV 350 (727)
Q Consensus 271 ~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlv 350 (727)
+.++..-.-...+|||+|+..++++.+.++.. ++.+.++||+|++++|.++++.|+.| ..+|++
T Consensus 258 cdLYd~LtItQavIFcnTk~kVdwLtekm~~~---------nftVssmHGDm~qkERd~im~dFRsg-------~SrvLi 321 (400)
T KOG0328|consen 258 CDLYDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMEQKERDKIMNDFRSG-------KSRVLI 321 (400)
T ss_pred HHHhhhhehheEEEEecccchhhHHHHHHHhh---------CceeeeccCCcchhHHHHHHHHhhcC-------CceEEE
Confidence 66655555667999999999999999999874 68999999999999999999999999 899999
Q ss_pred ecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhcc
Q 004850 351 STNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (727)
Q Consensus 351 aTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~~ 423 (727)
+|||-+||||+|.|.+|||||+ |...+.|+||+||.||. +.|.++.|+..++...
T Consensus 322 tTDVwaRGiDv~qVslviNYDL------------------P~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~ 377 (400)
T KOG0328|consen 322 TTDVWARGIDVQQVSLVINYDL------------------PNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRI 377 (400)
T ss_pred EechhhccCCcceeEEEEecCC------------------CccHHHHhhhhccccccCCcceEEEEecHHHHHH
Confidence 9999999999999999999999 99999999999999999 9999999999887654
No 21
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-43 Score=371.56 Aligned_cols=342 Identities=18% Similarity=0.255 Sum_probs=284.1
Q ss_pred cCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCc---cCCCccccCceEE
Q 004850 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGV---DIETPDRRRKMMI 119 (727)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~---~~~~~~~~~~~~i 119 (727)
+..|.++|++....+.|.+.++..++.+|.+.|+..+.|.+|+..+.||||||++|..|+++.. .+....+...++|
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 4579999999999999999999999999999999999999999999999999999998887654 2334444446778
Q ss_pred EEcccchhhhccHHHHHHHhccccccceecee-eeeccccccCccccccChHHHHHHHhcccc--ccCCeeEEeeccCcC
Q 004850 120 ACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYS-IRFEDCSSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAHER 196 (727)
Q Consensus 120 ~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~-~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l--l~~~~~lIlDEaher 196 (727)
.||+++++|+..+...+++....+.|-.+|.. +.++........|.+||||+++.++-..+. -.+..+||||||| |
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R 226 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-R 226 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-H
Confidence 89999999999999999999998888888854 344443445678899999999999998886 5678899999999 8
Q ss_pred hhhHHHHHHHHHHHHH-hCCCCEEEEEcCcc--cHHHHHhhhcCCCe-eeeC-----CCccceeeeeccCCcccHHHHHH
Q 004850 197 TLATDVLFGLLKEVLK-NRPDLKLVVMSATL--EAEKFQGYFYGAPL-MKVP-----GRLHPVEIFYTQEPERDYLEAAI 267 (727)
Q Consensus 197 ~~~~d~ll~ll~~l~~-~~~~~~vil~SATl--~~~~~~~~f~~~p~-i~v~-----g~~~~v~~~y~~~~~~~~~~~~~ 267 (727)
+++++|--. |..++. ..+.+|++|||||. .+..+++.-...|. +.+- +....+.++|...+..+++..++
T Consensus 227 ~LDMGFk~t-L~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~ 305 (758)
T KOG0343|consen 227 MLDMGFKKT-LNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLW 305 (758)
T ss_pred HHHHhHHHH-HHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHH
Confidence 999987433 333333 34478999999998 46777776444444 4433 23345789999998888876655
Q ss_pred HHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcE
Q 004850 268 RTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRK 347 (727)
Q Consensus 268 ~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~k 347 (727)
..+ .+....++|||+++++++..+++.+... .|++.+++|||.|+|..|..+|..|-.. ..-
T Consensus 306 sFI----~shlk~K~iVF~SscKqvkf~~e~F~rl-------rpg~~l~~L~G~~~Q~~R~ev~~~F~~~-------~~~ 367 (758)
T KOG0343|consen 306 SFI----KSHLKKKSIVFLSSCKQVKFLYEAFCRL-------RPGIPLLALHGTMSQKKRIEVYKKFVRK-------RAV 367 (758)
T ss_pred HHH----HhccccceEEEEehhhHHHHHHHHHHhc-------CCCCceeeeccchhHHHHHHHHHHHHHh-------cce
Confidence 443 3345668999999999999999999875 3789999999999999999999999876 668
Q ss_pred EEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhc
Q 004850 348 IVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (727)
Q Consensus 348 vlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~ 422 (727)
|++|||||+||||+|.|+|||++|. |.+.++|+||+||++|. ..|.|+.+.++.+.+
T Consensus 368 vLF~TDv~aRGLDFpaVdwViQ~DC------------------Pedv~tYIHRvGRtAR~~~~G~sll~L~psEeE 425 (758)
T KOG0343|consen 368 VLFCTDVAARGLDFPAVDWVIQVDC------------------PEDVDTYIHRVGRTARYKERGESLLMLTPSEEE 425 (758)
T ss_pred EEEeehhhhccCCCcccceEEEecC------------------chhHHHHHHHhhhhhcccCCCceEEEEcchhHH
Confidence 9999999999999999999999998 99999999999999999 889999999887643
No 22
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3.3e-42 Score=393.40 Aligned_cols=349 Identities=16% Similarity=0.171 Sum_probs=261.2
Q ss_pred CCCCcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCcc----CCCcc
Q 004850 37 NNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVD----IETPD 112 (727)
Q Consensus 37 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~----~~~~~ 112 (727)
...+.++.+|+++++++.+.+.+...++..++++|.+++|.+..|+++++++|||||||+++..+++.... .....
T Consensus 123 ~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~ 202 (545)
T PTZ00110 123 ENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGD 202 (545)
T ss_pred CCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCC
Confidence 34566788999999999999999999999999999999999999999999999999999998776654321 11111
Q ss_pred ccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeeccc--cccCccccccChHHHHHHHhcccc-ccCCeeEE
Q 004850 113 RRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERYKVIV 189 (727)
Q Consensus 113 ~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lI 189 (727)
....++++||++++.|+...++.+....+......+|........ ......|.++|||++.+.+..... +.++++||
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lV 282 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLV 282 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEE
Confidence 233566778888877777777666655444443344432111111 112457889999999998876654 89999999
Q ss_pred eeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH--HHHHhhh-cCCCeeeeCCC-----ccceeeeeccCCccc
Q 004850 190 LDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA--EKFQGYF-YGAPLMKVPGR-----LHPVEIFYTQEPERD 261 (727)
Q Consensus 190 lDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~--~~~~~~f-~~~p~i~v~g~-----~~~v~~~y~~~~~~~ 261 (727)
+|||| ++++.++...+.+.+...+++.|++++|||++. +.+++.+ ...|+....+. ...+++.+......+
T Consensus 283 iDEAd-~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~ 361 (545)
T PTZ00110 283 LDEAD-RMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHE 361 (545)
T ss_pred eehHH-hhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechh
Confidence 99999 577777655444444445578999999999964 4455444 33444322221 123444443333334
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCC
Q 004850 262 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEG 341 (727)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~ 341 (727)
+...+...+..+. ...+++||||++++.++.+++.|... ++.+..+||++++.+|..+++.|+.|
T Consensus 362 k~~~L~~ll~~~~--~~~~k~LIF~~t~~~a~~l~~~L~~~---------g~~~~~ihg~~~~~eR~~il~~F~~G---- 426 (545)
T PTZ00110 362 KRGKLKMLLQRIM--RDGDKILIFVETKKGADFLTKELRLD---------GWPALCIHGDKKQEERTWVLNEFKTG---- 426 (545)
T ss_pred HHHHHHHHHHHhc--ccCCeEEEEecChHHHHHHHHHHHHc---------CCcEEEEECCCcHHHHHHHHHHHhcC----
Confidence 4443333332222 14678999999999999999999753 67889999999999999999999999
Q ss_pred CCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhh
Q 004850 342 GPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (727)
Q Consensus 342 ~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~ 420 (727)
..+||||||+++||||||+|++|||+|+ |.+.++|+||+|||||. ++|.||.|+++++
T Consensus 427 ---~~~ILVaTdv~~rGIDi~~v~~VI~~d~------------------P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~ 485 (545)
T PTZ00110 427 ---KSPIMIATDVASRGLDVKDVKYVINFDF------------------PNQIEDYVHRIGRTGRAGAKGASYTFLTPDK 485 (545)
T ss_pred ---CCcEEEEcchhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhcccccCCCCceEEEEECcch
Confidence 8899999999999999999999999999 99999999999999999 8899999999876
Q ss_pred hc
Q 004850 421 FN 422 (727)
Q Consensus 421 ~~ 422 (727)
..
T Consensus 486 ~~ 487 (545)
T PTZ00110 486 YR 487 (545)
T ss_pred HH
Confidence 53
No 23
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.5e-42 Score=386.67 Aligned_cols=338 Identities=18% Similarity=0.235 Sum_probs=260.3
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcc
Q 004850 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (727)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (727)
.+|+++++++.+.+.+...++..++++|.++++.+.+|++++++||||||||+++..++++..... ....+.++++||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-~~~~~~lil~Ptr 82 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-RFRVQALVLCPTR 82 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc-cCCceEEEEeCCH
Confidence 479999999999999999999999999999999999999999999999999999998888765221 1123456777887
Q ss_pred cchhhhccHHHHHHHhc-cccccceeceeeeeccc--cccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcChhh
Q 004850 124 PRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA 199 (727)
Q Consensus 124 p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~~~ 199 (727)
++..|.....+.++... +..+....|......+. ...+..|.++|||++.+++....+ +.++++||+|||| ++++
T Consensus 83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l~ 161 (460)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-RMLD 161 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH-HHhC
Confidence 77777666666665433 34444444432111111 113567889999999998876554 8999999999999 4666
Q ss_pred HHHHHHHHHHHHHh-CCCCEEEEEcCcccH--HHHHhhhcCCCe-eeeCC--CccceeeeeccCCcccHHHHHHHHHHHH
Q 004850 200 TDVLFGLLKEVLKN-RPDLKLVVMSATLEA--EKFQGYFYGAPL-MKVPG--RLHPVEIFYTQEPERDYLEAAIRTVVQI 273 (727)
Q Consensus 200 ~d~ll~ll~~l~~~-~~~~~vil~SATl~~--~~~~~~f~~~p~-i~v~g--~~~~v~~~y~~~~~~~~~~~~~~~l~~i 273 (727)
.++... +..+... .++.+++++|||++. ..++..+...|. +.+.. ....++++|...+..++.+.+ ..+
T Consensus 162 ~g~~~~-l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l----~~l 236 (460)
T PRK11776 162 MGFQDA-IDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPAL----QRL 236 (460)
T ss_pred cCcHHH-HHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHH----HHH
Confidence 655433 3344443 347899999999964 556666555454 43432 223466777666555554433 333
Q ss_pred hhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecC
Q 004850 274 HMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 353 (727)
Q Consensus 274 ~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTn 353 (727)
.....++++||||+++++++.+++.|... ++.+..+||+|++.+|..+++.|++| ..+||||||
T Consensus 237 l~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------~~~v~~~hg~~~~~eR~~~l~~F~~g-------~~~vLVaTd 300 (460)
T PRK11776 237 LLHHQPESCVVFCNTKKECQEVADALNAQ---------GFSALALHGDLEQRDRDQVLVRFANR-------SCSVLVATD 300 (460)
T ss_pred HHhcCCCceEEEECCHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHHcC-------CCcEEEEec
Confidence 33345678999999999999999999874 68899999999999999999999999 899999999
Q ss_pred ccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhc
Q 004850 354 IAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (727)
Q Consensus 354 iAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~ 422 (727)
++++|||||+|++|||+|+ |.+.++|+||+|||||. +.|.||.|+++.+..
T Consensus 301 v~~rGiDi~~v~~VI~~d~------------------p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~ 352 (460)
T PRK11776 301 VAARGLDIKALEAVINYEL------------------ARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQ 352 (460)
T ss_pred ccccccchhcCCeEEEecC------------------CCCHhHhhhhcccccCCCCcceEEEEEchhHHH
Confidence 9999999999999999999 99999999999999999 789999999987653
No 24
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-42 Score=349.68 Aligned_cols=340 Identities=19% Similarity=0.239 Sum_probs=259.2
Q ss_pred ccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEE
Q 004850 42 LINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIAC 121 (727)
Q Consensus 42 ~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~ 121 (727)
..++|+.+++++|+.+-++..+...++++|..+||.|++|++++.++.||||||++|..++++... ..+.+...+++.|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLs-edP~giFalvlTP 83 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLS-EDPYGIFALVLTP 83 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhc-cCCCcceEEEecc
Confidence 356899999999999999999999999999999999999999999999999999999999999863 2333333344445
Q ss_pred cccchhhhccHHHHHHHhccccccceeceeeeeccc--cccCccccccChHHHHHHHhccc-----cccCCeeEEeeccC
Q 004850 122 TQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDP-----LLERYKVIVLDEAH 194 (727)
Q Consensus 122 t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~-----ll~~~~~lIlDEah 194 (727)
|++++++.-..+..+.+.++.++.-.||+....... ...+.+++++|||++-.++..+. .+.+.+++|+||||
T Consensus 84 TrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD 163 (442)
T KOG0340|consen 84 TRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD 163 (442)
T ss_pred hHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh
Confidence 555544443333334566677776777765433322 23467888999999999888762 38899999999998
Q ss_pred cChhhHHHHHHHHHHHHHhCC-CCEEEEEcCcccHHHHHhhhcCCCe-------ee-eCCC--ccceeeeeccCCcccHH
Q 004850 195 ERTLATDVLFGLLKEVLKNRP-DLKLVVMSATLEAEKFQGYFYGAPL-------MK-VPGR--LHPVEIFYTQEPERDYL 263 (727)
Q Consensus 195 er~~~~d~ll~ll~~l~~~~~-~~~vil~SATl~~~~~~~~f~~~p~-------i~-v~g~--~~~v~~~y~~~~~~~~~ 263 (727)
|.++.++ -+.|..+..-.| .+|.++||||+.... ...| ++|+ .. ++|. ...+.+.|+.++...+-
T Consensus 164 -rvL~~~f-~d~L~~i~e~lP~~RQtLlfSATitd~i-~ql~-~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkd 239 (442)
T KOG0340|consen 164 -RVLAGCF-PDILEGIEECLPKPRQTLLFSATITDTI-KQLF-GCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKD 239 (442)
T ss_pred -hhhccch-hhHHhhhhccCCCccceEEEEeehhhHH-HHhh-cCCcccccceEEeccCCCCchhhhhhheeecchhhhH
Confidence 6666653 344444444334 569999999995321 1222 2221 11 1222 12345667766654443
Q ss_pred HHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCC
Q 004850 264 EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGP 343 (727)
Q Consensus 264 ~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~ 343 (727)
..++. ++.....++.++++||+++..+++.++..|... ++.+..|||.|+|.+|..++..|+.+
T Consensus 240 aYLv~-~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l---------e~r~~~lHs~m~Q~eR~~aLsrFrs~------ 303 (442)
T KOG0340|consen 240 AYLVH-LLRDFENKENGSIMIFVNTTRECQLLSMTLKNL---------EVRVVSLHSQMPQKERLAALSRFRSN------ 303 (442)
T ss_pred HHHHH-HHhhhhhccCceEEEEeehhHHHHHHHHHHhhh---------ceeeeehhhcchHHHHHHHHHHHhhc------
Confidence 33333 333344447899999999999999999998875 79999999999999999999999999
Q ss_pred CCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhh
Q 004850 344 PGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (727)
Q Consensus 344 ~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~ 421 (727)
..+|++|||||+||+|||.|..|||+++ |-+..+|+||+|||+|+ +.|.+++++++.+.
T Consensus 304 -~~~iliaTDVAsRGLDIP~V~LVvN~di------------------Pr~P~~yiHRvGRtARAGR~G~aiSivt~rDv 363 (442)
T KOG0340|consen 304 -AARILIATDVASRGLDIPTVELVVNHDI------------------PRDPKDYIHRVGRTARAGRKGMAISIVTQRDV 363 (442)
T ss_pred -CccEEEEechhhcCCCCCceeEEEecCC------------------CCCHHHHHHhhcchhcccCCcceEEEechhhH
Confidence 8999999999999999999999999999 99999999999999999 88999999997654
No 25
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=4.6e-41 Score=353.96 Aligned_cols=340 Identities=16% Similarity=0.175 Sum_probs=270.0
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCcc---CCCccccCceEEE
Q 004850 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVD---IETPDRRRKMMIA 120 (727)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~---~~~~~~~~~~~i~ 120 (727)
..|+...+|+...+.++.+++..++++|+..|+-+..|+++++.+.||||||.+|..+.++... +...+....++++
T Consensus 82 ~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~ 161 (543)
T KOG0342|consen 82 FRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIIC 161 (543)
T ss_pred hHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEec
Confidence 3588899999999999999999999999999999999999999999999999999977765431 2222333356678
Q ss_pred EcccchhhhccHHHHHHHhc-cccccceeceeeeecccc--ccCccccccChHHHHHHHhccc--cccCCeeEEeeccCc
Q 004850 121 CTQPRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDP--LLERYKVIVLDEAHE 195 (727)
Q Consensus 121 ~t~p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~~~~~~--~~~~~i~~lT~G~l~r~~~~~~--ll~~~~~lIlDEahe 195 (727)
||++++.|+..+++.+.+.. +..++..+|...+.-... .....|.+.|||+|++++.... +..+.+++|+||||
T Consensus 162 PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD- 240 (543)
T KOG0342|consen 162 PTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD- 240 (543)
T ss_pred ccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch-
Confidence 89999999999999888877 666777777654322211 1267788999999999998765 36777999999999
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc--HHHHHhhhcC-CCe-eeeC-CC----ccceeeeeccCCcccHHHHH
Q 004850 196 RTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYFYG-APL-MKVP-GR----LHPVEIFYTQEPERDYLEAA 266 (727)
Q Consensus 196 r~~~~d~ll~ll~~l~~~~~~~~vil~SATl~--~~~~~~~f~~-~p~-i~v~-g~----~~~v~~~y~~~~~~~~~~~~ 266 (727)
|.++++|-.++.+.+......+|.++||||++ ++.++..... .|+ +.+. +. ...+++-|.-.+....+-.+
T Consensus 241 rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll 320 (543)
T KOG0342|consen 241 RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLL 320 (543)
T ss_pred hhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHH
Confidence 78888876555555444344789999999996 4556554332 233 2222 21 12477888887776665444
Q ss_pred HHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCc
Q 004850 267 IRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGR 346 (727)
Q Consensus 267 ~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~ 346 (727)
...+.+. ...-+|+||++|...+..+++.|+.. .+.|..+||+++|..|..+|..|.+. ..
T Consensus 321 ~~~LKk~---~~~~KiiVF~sT~~~vk~~~~lL~~~---------dlpv~eiHgk~~Q~kRT~~~~~F~ka-------es 381 (543)
T KOG0342|consen 321 YTFLKKN---IKRYKIIVFFSTCMSVKFHAELLNYI---------DLPVLEIHGKQKQNKRTSTFFEFCKA-------ES 381 (543)
T ss_pred HHHHHHh---cCCceEEEEechhhHHHHHHHHHhhc---------CCchhhhhcCCcccccchHHHHHhhc-------cc
Confidence 4443332 12268999999999999999999853 68899999999999999999999987 78
Q ss_pred EEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhh
Q 004850 347 KIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (727)
Q Consensus 347 kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~ 421 (727)
-|+||||||+||+|+|+|++||++|. |.+.++|+||+|||||. ..|.++.+..+.+.
T Consensus 382 gIL~cTDVaARGlD~P~V~~VvQ~~~------------------P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El 439 (543)
T KOG0342|consen 382 GILVCTDVAARGLDIPDVDWVVQYDP------------------PSDPEQYIHRVGRTAREGKEGKALLLLAPWEL 439 (543)
T ss_pred ceEEecchhhccCCCCCceEEEEeCC------------------CCCHHHHHHHhccccccCCCceEEEEeChhHH
Confidence 89999999999999999999999999 99999999999999999 78999999988765
No 26
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.3e-40 Score=383.67 Aligned_cols=338 Identities=17% Similarity=0.206 Sum_probs=256.0
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcc
Q 004850 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (727)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (727)
.+|+++++++.+.+.+++.++..++++|.++++.+.+|+++++.||||||||+++..++++.... .....+.++++||+
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~-~~~~~~~LIL~PTr 84 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP-ELKAPQILVLAPTR 84 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh-ccCCCeEEEEeCcH
Confidence 36999999999999999999999999999999999999999999999999999999888765421 11122345666776
Q ss_pred cchhhhccHHHHHHHhc-cccccceeceeeeecc--ccccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcChhh
Q 004850 124 PRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA 199 (727)
Q Consensus 124 p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~~~ 199 (727)
++..|.......+.... +..+...+|....... .......|.++|+|++++++....+ +.++++|||||||+ +++
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~-ml~ 163 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE-MLR 163 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH-Hhh
Confidence 66666555555554433 3444444443211111 1123567899999999998877665 89999999999995 566
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCcccH--HHHH-hhhcCCCeeeeCCCc---cceeeeeccCCcccHHHHHHHHHHHH
Q 004850 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEA--EKFQ-GYFYGAPLMKVPGRL---HPVEIFYTQEPERDYLEAAIRTVVQI 273 (727)
Q Consensus 200 ~d~ll~ll~~l~~~~~~~~vil~SATl~~--~~~~-~~f~~~p~i~v~g~~---~~v~~~y~~~~~~~~~~~~~~~l~~i 273 (727)
..+...+...+....+..++++||||++. ..+. .|+.++..+.+.... ..+.+.|......++.+.+.. +
T Consensus 164 ~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~----~ 239 (629)
T PRK11634 164 MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR----F 239 (629)
T ss_pred cccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHH----H
Confidence 65544433333333347899999999964 3344 455555455554332 245566655554455444333 3
Q ss_pred hhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecC
Q 004850 274 HMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 353 (727)
Q Consensus 274 ~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTn 353 (727)
........+||||+++..++.+++.|... ++.+..+||+|++.+|.++++.|+.| +.+||||||
T Consensus 240 L~~~~~~~~IVF~~tk~~a~~l~~~L~~~---------g~~~~~lhgd~~q~~R~~il~~Fr~G-------~~~ILVATd 303 (629)
T PRK11634 240 LEAEDFDAAIIFVRTKNATLEVAEALERN---------GYNSAALNGDMNQALREQTLERLKDG-------RLDILIATD 303 (629)
T ss_pred HHhcCCCCEEEEeccHHHHHHHHHHHHhC---------CCCEEEeeCCCCHHHHHHHHHHHhCC-------CCCEEEEcc
Confidence 33345678999999999999999999864 68899999999999999999999999 899999999
Q ss_pred ccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhh
Q 004850 354 IAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (727)
Q Consensus 354 iAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~ 421 (727)
++++|||||+|++|||+++ |.+.++|+||+|||||. +.|.|+.|++..+.
T Consensus 304 v~arGIDip~V~~VI~~d~------------------P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 304 VAARGLDVERISLVVNYDI------------------PMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred hHhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 9999999999999999999 99999999999999999 78999999987654
No 27
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.1e-41 Score=374.22 Aligned_cols=339 Identities=17% Similarity=0.188 Sum_probs=254.8
Q ss_pred cCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCC------ccccCc
Q 004850 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET------PDRRRK 116 (727)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~------~~~~~~ 116 (727)
..+|+++++++.+.+.+...++..++++|.++++.+..|++++++||||||||+++..++++...... ....+.
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 35799999999999999999999999999999999999999999999999999999887765431100 112345
Q ss_pred eEEEEcccchhhhccHHHHHHHhccccccceeceeeeecc--ccccCccccccChHHHHHHHhcccc-ccCCeeEEeecc
Q 004850 117 MMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEA 193 (727)
Q Consensus 117 ~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEa 193 (727)
++++||+++..|....++.++...+..++..+|....... .......|.++|||++.+.+....+ +.++++||+|||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 6777888888887777777777776665555543211111 1112457889999999988865544 899999999999
Q ss_pred CcChhhHHHHHHHHHHHHHhCC---CCEEEEEcCcccH--HHHH-hhhcCCCeeeeCCC---ccceeeeeccCCcccHHH
Q 004850 194 HERTLATDVLFGLLKEVLKNRP---DLKLVVMSATLEA--EKFQ-GYFYGAPLMKVPGR---LHPVEIFYTQEPERDYLE 264 (727)
Q Consensus 194 her~~~~d~ll~ll~~l~~~~~---~~~vil~SATl~~--~~~~-~~f~~~p~i~v~g~---~~~v~~~y~~~~~~~~~~ 264 (727)
|. .++.++... ++.+....+ ..+.+++|||++. ..+. .++.++..+.+... ...+.+.+......++..
T Consensus 167 d~-l~~~~f~~~-i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~ 244 (423)
T PRK04837 167 DR-MFDLGFIKD-IRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMR 244 (423)
T ss_pred HH-HhhcccHHH-HHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHH
Confidence 94 555554333 344444333 4568999999964 3333 34444334444322 123333333333333332
Q ss_pred HHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCC
Q 004850 265 AAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPP 344 (727)
Q Consensus 265 ~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~ 344 (727)
.+..+......+++|||++++..++.+++.|... ++.+..+||+|++.+|.++++.|+.|
T Consensus 245 ----~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~v~~lhg~~~~~~R~~~l~~F~~g------- 304 (423)
T PRK04837 245 ----LLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD---------GHRVGLLTGDVAQKKRLRILEEFTRG------- 304 (423)
T ss_pred ----HHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC---------CCcEEEecCCCChhHHHHHHHHHHcC-------
Confidence 3333333345678999999999999999999763 68899999999999999999999999
Q ss_pred CcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhh
Q 004850 345 GRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (727)
Q Consensus 345 ~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~ 421 (727)
..+||||||+++||||||+|++|||+|+ |.+.++|+||+|||||. +.|.|+.|+++++.
T Consensus 305 ~~~vLVaTdv~~rGiDip~v~~VI~~d~------------------P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 305 DLDILVATDVAARGLHIPAVTHVFNYDL------------------PDDCEDYVHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred CCcEEEEechhhcCCCccccCEEEEeCC------------------CCchhheEeccccccCCCCCeeEEEEeCHHHH
Confidence 8999999999999999999999999999 99999999999999999 88999999998754
No 28
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.2e-40 Score=379.43 Aligned_cols=350 Identities=14% Similarity=0.113 Sum_probs=262.7
Q ss_pred cCCCCcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCcc------CC
Q 004850 36 MNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVD------IE 109 (727)
Q Consensus 36 ~~~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~------~~ 109 (727)
....+.++.+|+++++++.+.+.+...++..++++|.++++.+..|+++++++|||||||.++..+++.... ..
T Consensus 113 g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~ 192 (518)
T PLN00206 113 GEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPS 192 (518)
T ss_pred CCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccccc
Confidence 345567888999999999999999999999999999999999999999999999999999999888775421 01
Q ss_pred CccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeeccc--cccCccccccChHHHHHHHhccc-cccCCe
Q 004850 110 TPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDP-LLERYK 186 (727)
Q Consensus 110 ~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~-ll~~~~ 186 (727)
.......++++||+++..|....++.+.+..+......+|.....+.. ......|.++|||++...+.... .+.+++
T Consensus 193 ~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~ 272 (518)
T PLN00206 193 EQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVS 272 (518)
T ss_pred ccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchhee
Confidence 112234667778888877776666666665544443444433211111 12245788999999998887654 389999
Q ss_pred eEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc--HHHHHhhhcCCCeeeeCCC----ccceeeeeccCCcc
Q 004850 187 VIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYFYGAPLMKVPGR----LHPVEIFYTQEPER 260 (727)
Q Consensus 187 ~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~--~~~~~~~f~~~p~i~v~g~----~~~v~~~y~~~~~~ 260 (727)
+||+|||| ++++.++. ..+..+....++.|++++|||++ .+.++..+...++....+. ...+.+.+......
T Consensus 273 ~lViDEad-~ml~~gf~-~~i~~i~~~l~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~ 350 (518)
T PLN00206 273 VLVLDEVD-CMLERGFR-DQVMQIFQALSQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETK 350 (518)
T ss_pred EEEeecHH-HHhhcchH-HHHHHHHHhCCCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccch
Confidence 99999999 45665543 33444555556789999999995 4567776665555433332 12244444444433
Q ss_pred cHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCC
Q 004850 261 DYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKE 340 (727)
Q Consensus 261 ~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~ 340 (727)
++...+...+... ....+++|||++++..++.+++.|... .++.+..+||++++.+|..+++.|+.|
T Consensus 351 ~k~~~l~~~l~~~--~~~~~~~iVFv~s~~~a~~l~~~L~~~--------~g~~~~~~Hg~~~~~eR~~il~~Fr~G--- 417 (518)
T PLN00206 351 QKKQKLFDILKSK--QHFKPPAVVFVSSRLGADLLANAITVV--------TGLKALSIHGEKSMKERREVMKSFLVG--- 417 (518)
T ss_pred hHHHHHHHHHHhh--cccCCCEEEEcCCchhHHHHHHHHhhc--------cCcceEEeeCCCCHHHHHHHHHHHHCC---
Confidence 3333333322211 122468999999999999999888753 268899999999999999999999999
Q ss_pred CCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchh
Q 004850 341 GGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEK 419 (727)
Q Consensus 341 ~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~ 419 (727)
..+||||||+++||||||+|++||++|+ |.|.++|+||+|||||. ..|.|+.|++.+
T Consensus 418 ----~~~ILVaTdvl~rGiDip~v~~VI~~d~------------------P~s~~~yihRiGRaGR~g~~G~ai~f~~~~ 475 (518)
T PLN00206 418 ----EVPVIVATGVLGRGVDLLRVRQVIIFDM------------------PNTIKEYIHQIGRASRMGEKGTAIVFVNEE 475 (518)
T ss_pred ----CCCEEEEecHhhccCCcccCCEEEEeCC------------------CCCHHHHHHhccccccCCCCeEEEEEEchh
Confidence 8899999999999999999999999999 99999999999999999 789999999987
Q ss_pred hhc
Q 004850 420 SFN 422 (727)
Q Consensus 420 ~~~ 422 (727)
+..
T Consensus 476 ~~~ 478 (518)
T PLN00206 476 DRN 478 (518)
T ss_pred HHH
Confidence 653
No 29
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.3e-39 Score=379.73 Aligned_cols=518 Identities=18% Similarity=0.201 Sum_probs=327.7
Q ss_pred CCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEccc
Q 004850 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQP 124 (727)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p 124 (727)
.|+++++++.+.+.+..+++. ++++|.++++.+.+|+++++++|||||||+++..++++.. ... .+.+.++ |
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l-~~~---~k~v~i~---P 73 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETF-LAG---LKSIYIV---P 73 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHH-HhC---CcEEEEe---c
Confidence 477889999999999888765 8999999999999999999999999999999887776543 111 2234444 4
Q ss_pred chhhhccHHHHHHH--hccccccceeceeeeeccccccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcChh-hH
Q 004850 125 RRVAAMSVSRRVAE--EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTL-AT 200 (727)
Q Consensus 125 ~~~~~~~v~~~v~~--~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~~-~~ 200 (727)
.+..+.+.++.+.+ ..+..++..+|..... ........+.++|++++..++...+. +.++++||+||+|+..- ..
T Consensus 74 ~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~-~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~r 152 (674)
T PRK01172 74 LRSLAMEKYEELSRLRSLGMRVKISIGDYDDP-PDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDR 152 (674)
T ss_pred hHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-hhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCc
Confidence 44444444444433 2233333333321110 01113457889999998777665543 89999999999996321 11
Q ss_pred H-HHHHHHHHHHHhCCCCEEEEEcCcc-cHHHHHhhhcCCCeeeeCCCccceeeeec--cC-----CcccHHHHHHHHHH
Q 004850 201 D-VLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRLHPVEIFYT--QE-----PERDYLEAAIRTVV 271 (727)
Q Consensus 201 d-~ll~ll~~l~~~~~~~~vil~SATl-~~~~~~~~f~~~p~i~v~g~~~~v~~~y~--~~-----~~~~~~~~~~~~l~ 271 (727)
+ .+..++..+....++.++|++|||+ +...+++|++ ++.+....+..|++.... .. ...... .....+.
T Consensus 153 g~~le~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~-~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~-~~~~~i~ 230 (674)
T PRK01172 153 GPTLETVLSSARYVNPDARILALSATVSNANELAQWLN-ASLIKSNFRPVPLKLGILYRKRLILDGYERSQV-DINSLIK 230 (674)
T ss_pred cHHHHHHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhC-CCccCCCCCCCCeEEEEEecCeeeecccccccc-cHHHHHH
Confidence 2 2333344443445689999999999 6788898875 445555556666553221 11 111110 1111222
Q ss_pred HHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCC----------------CCCeEEEEecCCCCHHHHhhhcCCCC
Q 004850 272 QIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQ----------------VGPVKVVPLYSTLPPAMQQKIFEPAP 335 (727)
Q Consensus 272 ~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~----------------~~~~~v~~lh~~l~~~~r~~~~~~~~ 335 (727)
+.. ...+++|||++++++++.++..|.+........ .-...+..+||+|++++|..+++.|+
T Consensus 231 ~~~--~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~ 308 (674)
T PRK01172 231 ETV--NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFR 308 (674)
T ss_pred HHH--hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHH
Confidence 222 346799999999999999999997653211100 00124778999999999999999999
Q ss_pred CCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCC---CceE
Q 004850 336 PPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKC 412 (727)
Q Consensus 336 ~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~---~G~~ 412 (727)
+| ..+|||||+++++|+|+|+..+||+ |. ..|+.. ...|+|..+|.||+|||||.+ .|.+
T Consensus 309 ~g-------~i~VLvaT~~la~Gvnipa~~VII~-~~---~~~~~~------~~~~~s~~~~~Qm~GRAGR~g~d~~g~~ 371 (674)
T PRK01172 309 NR-------YIKVIVATPTLAAGVNLPARLVIVR-DI---TRYGNG------GIRYLSNMEIKQMIGRAGRPGYDQYGIG 371 (674)
T ss_pred cC-------CCeEEEecchhhccCCCcceEEEEc-Cc---eEeCCC------CceeCCHHHHHHHhhcCCCCCCCCcceE
Confidence 99 8999999999999999999877775 33 233321 123899999999999999984 6777
Q ss_pred EEecc-hhhhc---ccCCCCCCCcccccCch------hhHHHHHHcCC----CCcccc---cCC--CCCc---HHHHHHH
Q 004850 413 FRLYT-EKSFN---NDLQPQTYPEILRSNLA------NTVLTLKKLGI----DDLVHF---DFM--DPPA---PETLMRA 470 (727)
Q Consensus 413 ~~L~t-~~~~~---~~l~~~~~pei~r~~l~------~~~L~lk~~~~----~~~~~~---~~~--~~P~---~~~i~~a 470 (727)
+.+.. .++++ ..+... |+-..+.|. ..+|...+.|. .++.+| .|+ .+++ .+.++.|
T Consensus 372 ~i~~~~~~~~~~~~~~l~~~--~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~ 449 (674)
T PRK01172 372 YIYAASPASYDAAKKYLSGE--PEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESS 449 (674)
T ss_pred EEEecCcccHHHHHHHHcCC--CCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHH
Confidence 66643 22222 223222 222222222 12344444443 333333 333 4332 4678999
Q ss_pred HHHHHHcCCcCCCC--CcchhhhhhccCCCChhhhhHHhhcCCCC-ChHHHHHHHHHhcCCCCCCCchHHH--HHHHHHH
Q 004850 471 LEVLNYLGALDDDG--NLTEMGEKMSEFPLDPQMSKMLVESPKYN-CSNEILSISAMLSVPNCFVRPREAQ--KAADEAK 545 (727)
Q Consensus 471 ~~~L~~lgald~~~--~lT~lG~~l~~lPl~p~~~k~ll~~~~~~-c~~~~l~i~a~ls~~~~f~~~~~~~--~~~~~~~ 545 (727)
++.|...|+|+.++ .+|++|+.++.+|++|..++.+..+..-. -...++.+.|.. .+ | .|...+ +......
T Consensus 450 l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~~~~~~--~e-~-~~~~~~~~~~~~~~~ 525 (674)
T PRK01172 450 LKFLKENGFIKGDVTLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALYYISLC--RE-I-IPANTRDDYYAMEFL 525 (674)
T ss_pred HHHHHHCCCcccCCcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHHHhhcC--cc-c-cccccchHHHHHHHH
Confidence 99999999998665 57999999999999999999998876543 233444444322 22 2 121111 1111111
Q ss_pred HHhCC--CCCCHHHHHHHHHHHhhcCCchhhHHhhcCChHHHHHHHHHHHHHHHH
Q 004850 546 ARFGH--IDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRI 598 (727)
Q Consensus 546 ~~~~~--~~sD~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~ql~~~ 598 (727)
..... ....++-..-+.++|.+.......+..+++....++.+.+...++...
T Consensus 526 ~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~~a 580 (674)
T PRK01172 526 EDIGVIDGDISAAKTAMVLRGWISEASMQKITDTYGIAPGDVQARASSADWISYS 580 (674)
T ss_pred HHhccccchhHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 11111 112334444566888876555567777888888887776655565433
No 30
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=5.8e-40 Score=369.08 Aligned_cols=339 Identities=15% Similarity=0.184 Sum_probs=253.3
Q ss_pred CCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCC-----ccccCceEE
Q 004850 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-----PDRRRKMMI 119 (727)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-----~~~~~~~~i 119 (727)
+|+++++++++.+.+.+.++..++++|.++++.+.+|+++++.+|||||||.++..++++...... ....+.+++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 589999999999999999999999999999999999999999999999999999888776542111 011235677
Q ss_pred EEcccchhhhccHHHHHHHhccccccceeceeeeecc--ccccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcC
Q 004850 120 ACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHER 196 (727)
Q Consensus 120 ~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher 196 (727)
+||+++..|.......+....+......+|......+ .......|.++|||+++..+....+ +.++++||+|||| +
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah-~ 160 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD-R 160 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-H
Confidence 7888877777666666665555444444443211111 1123467889999999988776654 8999999999999 4
Q ss_pred hhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH--HHHHhhhcCCC-eeeeCCC---ccceeeeeccCCcccHHHHHHHHH
Q 004850 197 TLATDVLFGLLKEVLKNRPDLKLVVMSATLEA--EKFQGYFYGAP-LMKVPGR---LHPVEIFYTQEPERDYLEAAIRTV 270 (727)
Q Consensus 197 ~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~--~~~~~~f~~~p-~i~v~g~---~~~v~~~y~~~~~~~~~~~~~~~l 270 (727)
.++.++...+...+....+..+++++|||++. ..+...+...| .+.+..+ ...+.+++.......+. ..+
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~----~~l 236 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKR----ELL 236 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHH----HHH
Confidence 66655543333333233346799999999964 44554443333 3444322 12344555443333322 222
Q ss_pred HHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEE
Q 004850 271 VQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVV 350 (727)
Q Consensus 271 ~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlv 350 (727)
..+.......++|||++++.+++.+++.|... ++.+..+||++++.+|.++++.|++| ..+|||
T Consensus 237 ~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~R~~~l~~F~~g-------~~~iLV 300 (456)
T PRK10590 237 SQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD---------GIRSAAIHGNKSQGARTRALADFKSG-------DIRVLV 300 (456)
T ss_pred HHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC---------CCCEEEEECCCCHHHHHHHHHHHHcC-------CCcEEE
Confidence 33333344568999999999999999999763 68899999999999999999999999 889999
Q ss_pred ecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhc
Q 004850 351 STNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (727)
Q Consensus 351 aTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~ 422 (727)
|||++++|||||+|++||||++ |.+.++|+||+|||||. ..|.|+.|++..+..
T Consensus 301 aTdv~~rGiDip~v~~VI~~~~------------------P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~ 355 (456)
T PRK10590 301 ATDIAARGLDIEELPHVVNYEL------------------PNVPEDYVHRIGRTGRAAATGEALSLVCVDEHK 355 (456)
T ss_pred EccHHhcCCCcccCCEEEEeCC------------------CCCHHHhhhhccccccCCCCeeEEEEecHHHHH
Confidence 9999999999999999999999 99999999999999999 789999999987653
No 31
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9e-40 Score=374.61 Aligned_cols=337 Identities=17% Similarity=0.187 Sum_probs=254.5
Q ss_pred CCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccC----C--CccccCceE
Q 004850 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDI----E--TPDRRRKMM 118 (727)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~----~--~~~~~~~~~ 118 (727)
+|+++++++.+.+.|.+.++..++++|.+.|+.+.+|+++++++|||||||++|..++++.... . .....+.++
T Consensus 10 ~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLI 89 (572)
T PRK04537 10 TFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALI 89 (572)
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEE
Confidence 5999999999999999999999999999999999999999999999999999998887764310 0 111234677
Q ss_pred EEEcccchhhhccHHHHHHHhccccccceeceeeeecc--ccccCccccccChHHHHHHHhccc--cccCCeeEEeeccC
Q 004850 119 IACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDP--LLERYKVIVLDEAH 194 (727)
Q Consensus 119 i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~--ll~~~~~lIlDEah 194 (727)
++||+++..|....+..+....+..+...+|....... ....+..|.++|+|++++.+.... .+.++++|||||||
T Consensus 90 l~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh 169 (572)
T PRK04537 90 LAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD 169 (572)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH
Confidence 88888888888777777776666655555553211111 111245789999999999876543 37889999999999
Q ss_pred cChhhHHHHHHHHHHHHHhCC---CCEEEEEcCcccH--HHHH-hhhcCCCeeeeCCCc---cceeeeeccCCcccHHHH
Q 004850 195 ERTLATDVLFGLLKEVLKNRP---DLKLVVMSATLEA--EKFQ-GYFYGAPLMKVPGRL---HPVEIFYTQEPERDYLEA 265 (727)
Q Consensus 195 er~~~~d~ll~ll~~l~~~~~---~~~vil~SATl~~--~~~~-~~f~~~p~i~v~g~~---~~v~~~y~~~~~~~~~~~ 265 (727)
. +++.++.. .+..++...+ +.++++||||++. ..+. .++.....+.+.... ..+.+.+......+++.
T Consensus 170 ~-lld~gf~~-~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~- 246 (572)
T PRK04537 170 R-MFDLGFIK-DIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQT- 246 (572)
T ss_pred H-HhhcchHH-HHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHH-
Confidence 4 55554433 2333333333 6799999999964 2333 444433333333221 22444444433333333
Q ss_pred HHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCC
Q 004850 266 AIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPG 345 (727)
Q Consensus 266 ~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~ 345 (727)
.+..+.......++|||+++++.++.+++.|... ++.+..+||+|++.+|.++++.|++| .
T Consensus 247 ---~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~---------g~~v~~lhg~l~~~eR~~il~~Fr~G-------~ 307 (572)
T PRK04537 247 ---LLLGLLSRSEGARTMVFVNTKAFVERVARTLERH---------GYRVGVLSGDVPQKKRESLLNRFQKG-------Q 307 (572)
T ss_pred ---HHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHHHHHHHHHHcC-------C
Confidence 3344444445678999999999999999999764 67899999999999999999999999 8
Q ss_pred cEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhh
Q 004850 346 RKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (727)
Q Consensus 346 ~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~ 421 (727)
.+||||||++++|||||+|++|||||+ |.+.++|+||+|||||. ..|.|+.|+++.+.
T Consensus 308 ~~VLVaTdv~arGIDip~V~~VInyd~------------------P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~ 366 (572)
T PRK04537 308 LEILVATDVAARGLHIDGVKYVYNYDL------------------PFDAEDYVHRIGRTARLGEEGDAISFACERYA 366 (572)
T ss_pred CeEEEEehhhhcCCCccCCCEEEEcCC------------------CCCHHHHhhhhcccccCCCCceEEEEecHHHH
Confidence 999999999999999999999999999 99999999999999999 88999999987654
No 32
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.4e-39 Score=362.77 Aligned_cols=340 Identities=17% Similarity=0.222 Sum_probs=256.7
Q ss_pred CCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCcc---CCCccccCceEEEE
Q 004850 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVD---IETPDRRRKMMIAC 121 (727)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~---~~~~~~~~~~~i~~ 121 (727)
+|+++++++.+.+.+...++..++++|.++++.+.+|+++++++|||||||+++..++++... .......+.++++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 599999999999999999999999999999999999999999999999999998877665431 11111123556667
Q ss_pred cccchhhhccHHHHHHHhccccccceeceeeeecc--ccccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcChh
Q 004850 122 TQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTL 198 (727)
Q Consensus 122 t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~~ 198 (727)
|+++..|+...+..++...+..++...|....... ....+..|.++|+|+++..+....+ +.++++||+|||| +++
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~~l 160 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-RML 160 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-HHh
Confidence 77777777777777777766666665553321111 1123567899999999998877665 8899999999999 566
Q ss_pred hHHHHHHHHHHHHH-hCCCCEEEEEcCcccH---HHHHhhhcCCCe-eeeCCC---ccceeeeeccCCcccHHHHHHHHH
Q 004850 199 ATDVLFGLLKEVLK-NRPDLKLVVMSATLEA---EKFQGYFYGAPL-MKVPGR---LHPVEIFYTQEPERDYLEAAIRTV 270 (727)
Q Consensus 199 ~~d~ll~ll~~l~~-~~~~~~vil~SATl~~---~~~~~~f~~~p~-i~v~g~---~~~v~~~y~~~~~~~~~~~~~~~l 270 (727)
+..+. ..+..+.. .+...++++||||++. ..+...+...|+ +.+... ...+.++|...... ......+
T Consensus 161 ~~~~~-~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~---~~k~~~l 236 (434)
T PRK11192 161 DMGFA-QDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDL---EHKTALL 236 (434)
T ss_pred CCCcH-HHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCH---HHHHHHH
Confidence 65543 33333333 2336799999999963 455555554443 222221 12244444433321 2223344
Q ss_pred HHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEE
Q 004850 271 VQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVV 350 (727)
Q Consensus 271 ~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlv 350 (727)
..+......+++|||++++++++.+++.|... ++.+..+||+|++.+|..+++.|++| ..+|||
T Consensus 237 ~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------~~~~~~l~g~~~~~~R~~~l~~f~~G-------~~~vLV 300 (434)
T PRK11192 237 CHLLKQPEVTRSIVFVRTRERVHELAGWLRKA---------GINCCYLEGEMVQAKRNEAIKRLTDG-------RVNVLV 300 (434)
T ss_pred HHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC---------CCCEEEecCCCCHHHHHHHHHHHhCC-------CCcEEE
Confidence 44444446789999999999999999999863 68899999999999999999999999 899999
Q ss_pred ecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhcc
Q 004850 351 STNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (727)
Q Consensus 351 aTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~~ 423 (727)
|||++++|||||+|++|||+|+ |.|.+.|+||+|||||. ..|.|+.|++..++..
T Consensus 301 aTd~~~~GiDip~v~~VI~~d~------------------p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~ 356 (434)
T PRK11192 301 ATDVAARGIDIDDVSHVINFDM------------------PRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLL 356 (434)
T ss_pred EccccccCccCCCCCEEEEECC------------------CCCHHHHhhcccccccCCCCceEEEEecHHHHHH
Confidence 9999999999999999999999 99999999999999999 7899999999877643
No 33
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=4.1e-41 Score=342.95 Aligned_cols=360 Identities=17% Similarity=0.155 Sum_probs=271.4
Q ss_pred cCCCCCCCCcCCCCcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHh---
Q 004850 27 TNGVGPGAMMNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVL--- 103 (727)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll--- 103 (727)
+.+..+-.....-++++.+|.++.|+..+.+.++.+++..++++|-+-+|.++.|++.+.++-||||||..|.++++
T Consensus 153 Rk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~ 232 (610)
T KOG0341|consen 153 RKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFA 232 (610)
T ss_pred HHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHH
Confidence 34455555666667889999999999999999999999999999999999999999999999999999998775543
Q ss_pred -cC---ccCCCccccCceEEEEcccchhhhccHHHHHHHhccc------cccceeceeeeecccc--ccCccccccChHH
Q 004850 104 -EG---VDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV------TIGEEVGYSIRFEDCS--SARTVLKYLTDGM 171 (727)
Q Consensus 104 -~~---~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~------~~~~~vg~~~~~~~~~--~~~~~i~~lT~G~ 171 (727)
+. .++....++.+++|+|+++++-|...+.+.+...+.. ..+-.+|...-.++.. ...-.|++.|||+
T Consensus 233 LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGR 312 (610)
T KOG0341|consen 233 LEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGR 312 (610)
T ss_pred HHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcch
Confidence 21 1233344556888999999999988888877654422 1222333322112221 2356788999999
Q ss_pred HHHHHhcccc-ccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH--HHHHhhhcCCCeeeeCCCcc
Q 004850 172 LLREAMTDPL-LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA--EKFQGYFYGAPLMKVPGRLH 248 (727)
Q Consensus 172 l~r~~~~~~l-l~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~--~~~~~~f~~~p~i~v~g~~~ 248 (727)
+.+++....+ |.-..+|.||||| |+++++|--++-..+---...+|+++|||||+. ..|++-..--|+....||.-
T Consensus 313 L~DmL~KK~~sLd~CRyL~lDEAD-RmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAG 391 (610)
T KOG0341|consen 313 LMDMLAKKIMSLDACRYLTLDEAD-RMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAG 391 (610)
T ss_pred HHHHHHHhhccHHHHHHhhhhhHH-HHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEeccccc
Confidence 9999887765 8888999999999 899988743322222222236799999999974 55665544456666666643
Q ss_pred ceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHh
Q 004850 249 PVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQ 328 (727)
Q Consensus 249 ~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 328 (727)
.......+.-..-+.++.+..++...+ ....++|||+-.+.+++.+.++|--. ++.++.+||+-+|++|.
T Consensus 392 AAsldViQevEyVkqEaKiVylLeCLQ-KT~PpVLIFaEkK~DVD~IhEYLLlK---------GVEavaIHGGKDQedR~ 461 (610)
T KOG0341|consen 392 AASLDVIQEVEYVKQEAKIVYLLECLQ-KTSPPVLIFAEKKADVDDIHEYLLLK---------GVEAVAIHGGKDQEDRH 461 (610)
T ss_pred ccchhHHHHHHHHHhhhhhhhHHHHhc-cCCCceEEEeccccChHHHHHHHHHc---------cceeEEeecCcchhHHH
Confidence 222222221111122233334444433 34568999999999999999999653 79999999999999999
Q ss_pred hhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-
Q 004850 329 KIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT- 407 (727)
Q Consensus 329 ~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~- 407 (727)
..++.|+.| +..|+||||||+.|+|+|+|.||||||+ |-..++|+||+|||||.
T Consensus 462 ~ai~afr~g-------kKDVLVATDVASKGLDFp~iqHVINyDM------------------P~eIENYVHRIGRTGRsg 516 (610)
T KOG0341|consen 462 YAIEAFRAG-------KKDVLVATDVASKGLDFPDIQHVINYDM------------------PEEIENYVHRIGRTGRSG 516 (610)
T ss_pred HHHHHHhcC-------CCceEEEecchhccCCCccchhhccCCC------------------hHHHHHHHHHhcccCCCC
Confidence 999999999 8999999999999999999999999999 99999999999999999
Q ss_pred CCceEEEecchhhhc
Q 004850 408 QPGKCFRLYTEKSFN 422 (727)
Q Consensus 408 ~~G~~~~L~t~~~~~ 422 (727)
+.|.+.+|.++...+
T Consensus 517 ~~GiATTfINK~~~e 531 (610)
T KOG0341|consen 517 KTGIATTFINKNQEE 531 (610)
T ss_pred CcceeeeeecccchH
Confidence 889999999986543
No 34
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-39 Score=342.35 Aligned_cols=347 Identities=18% Similarity=0.247 Sum_probs=282.7
Q ss_pred CCCcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcC----ccCCCccc
Q 004850 38 NNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEG----VDIETPDR 113 (727)
Q Consensus 38 ~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~----~~~~~~~~ 113 (727)
..+.++.+|+..++++.+...+....+..+|++|.+++|....|++|+.++.||||||.+|..+.+.. .++.....
T Consensus 217 s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~g 296 (731)
T KOG0339|consen 217 SPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEG 296 (731)
T ss_pred CCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCC
Confidence 34556788999999999999999889999999999999999999999999999999999998665533 22333344
Q ss_pred cCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeeccccc--cCccccccChHHHHHHHhcccc-ccCCeeEEe
Q 004850 114 RRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSS--ARTVLKYLTDGMLLREAMTDPL-LERYKVIVL 190 (727)
Q Consensus 114 ~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~--~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIl 190 (727)
+-+++++||++++.|+.++++.+++..+..+....|.....++... ....|+++|||+++.+..-.+. +.++++|||
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~ 376 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVL 376 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEE
Confidence 5567889999999999999999999998888788877665555433 3677899999999998876665 999999999
Q ss_pred eccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc--HHHHHhhhcCCCeeeeCCC----ccceeeeeccCC-cccHH
Q 004850 191 DEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYFYGAPLMKVPGR----LHPVEIFYTQEP-ERDYL 263 (727)
Q Consensus 191 DEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~--~~~~~~~f~~~p~i~v~g~----~~~v~~~y~~~~-~~~~~ 263 (727)
||+| |+.+++|.-.+-....+-+|++|+++||||+. ++.+++-+...|+-.+.|. ...|++.....+ ...++
T Consensus 377 DEad-rmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl 455 (731)
T KOG0339|consen 377 DEAD-RMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKL 455 (731)
T ss_pred echh-hhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHH
Confidence 9999 88888876655444455689999999999995 5777777777777666552 223333322222 22333
Q ss_pred HHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCC
Q 004850 264 EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGP 343 (727)
Q Consensus 264 ~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~ 343 (727)
..++ .++......|++|+|++.+.+.+.+...|... ++.+..|||++.|.+|++++..|+.+
T Consensus 456 ~wl~---~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk---------~~~v~llhgdkdqa~rn~~ls~fKkk------ 517 (731)
T KOG0339|consen 456 NWLL---RHLVEFSSEGKVLIFVTKKADAEEIAANLKLK---------GFNVSLLHGDKDQAERNEVLSKFKKK------ 517 (731)
T ss_pred HHHH---HHhhhhccCCcEEEEEeccCCHHHHHHHhccc---------cceeeeecCchhhHHHHHHHHHHhhc------
Confidence 3333 33333456799999999999999999988753 79999999999999999999999988
Q ss_pred CCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhc
Q 004850 344 PGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (727)
Q Consensus 344 ~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~ 422 (727)
...|++|||+|+||+||++++.|||||+ .-+.+.|.||+|||||+ ..|.+|+|+|+.+.+
T Consensus 518 -~~~VlvatDvaargldI~~ikTVvnyD~------------------ardIdththrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 518 -RKPVLVATDVAARGLDIPSIKTVVNYDF------------------ARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred -CCceEEEeeHhhcCCCccccceeecccc------------------cchhHHHHHHhhhcccccccceeeEEechhhHH
Confidence 7899999999999999999999999999 78999999999999999 779999999998764
No 35
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.5e-40 Score=326.10 Aligned_cols=359 Identities=17% Similarity=0.185 Sum_probs=288.7
Q ss_pred hhcccCCCCCCCCcCCCCcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHH
Q 004850 23 KLVKTNGVGPGAMMNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.....+.+.........+..-+.|+++.+...+...+-+.|+-.|.++|++.||....|+++..-+.||+|||.++..|.
T Consensus 64 ~l~lpp~d~R~~t~DVt~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~ 143 (459)
T KOG0326|consen 64 TLKLPPKDTRYKTEDVTATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPV 143 (459)
T ss_pred hccCCCCCccccccccccccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechh
Confidence 33333444333444444555678999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeecccccc--CccccccChHHHHHHHhccc
Q 004850 103 LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSA--RTVLKYLTDGMLLREAMTDP 180 (727)
Q Consensus 103 l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~--~~~i~~lT~G~l~r~~~~~~ 180 (727)
++..+... ...++++++||++++++.-+++..+++.++..+...+|...-.++.... .-++.+.|||+.++++-.+.
T Consensus 144 Lekid~~~-~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgV 222 (459)
T KOG0326|consen 144 LEKIDPKK-NVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGV 222 (459)
T ss_pred hhhcCccc-cceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhccc
Confidence 98875433 3456888999999999999999999999999888888876554544433 34566899999999887665
Q ss_pred -cccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCC-CCEEEEEcCccc--HHHHHh-hhcCCCeeeeCCC--ccceeee
Q 004850 181 -LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-DLKLVVMSATLE--AEKFQG-YFYGAPLMKVPGR--LHPVEIF 253 (727)
Q Consensus 181 -ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~-~~~vil~SATl~--~~~~~~-~f~~~p~i~v~g~--~~~v~~~ 253 (727)
.+++..++|+||||. .++.+| -..+.+++...| +.|++++|||++ +..|.+ |+.++-.|..... ...|.+|
T Consensus 223 a~ls~c~~lV~DEADK-lLs~~F-~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQy 300 (459)
T KOG0326|consen 223 ADLSDCVILVMDEADK-LLSVDF-QPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQY 300 (459)
T ss_pred ccchhceEEEechhhh-hhchhh-hhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhh
Confidence 499999999999984 566654 344444444433 889999999997 455654 4444444444332 3568999
Q ss_pred eccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCC
Q 004850 254 YTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEP 333 (727)
Q Consensus 254 y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~ 333 (727)
|....++.++..+-....+ -.-...+|||++.+.+|.++..+.+. ++.++.+|+.|.|+.|+++|..
T Consensus 301 YafV~e~qKvhCLntLfsk----LqINQsIIFCNS~~rVELLAkKITel---------GyscyyiHakM~Q~hRNrVFHd 367 (459)
T KOG0326|consen 301 YAFVEERQKVHCLNTLFSK----LQINQSIIFCNSTNRVELLAKKITEL---------GYSCYYIHAKMAQEHRNRVFHD 367 (459)
T ss_pred eeeechhhhhhhHHHHHHH----hcccceEEEeccchHhHHHHHHHHhc---------cchhhHHHHHHHHhhhhhhhhh
Confidence 9998888776544332222 22346799999999999999998875 6889999999999999999999
Q ss_pred CCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceE
Q 004850 334 APPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKC 412 (727)
Q Consensus 334 ~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~ 412 (727)
|++| .-+.+||||+.-|||||+.|.+|||+|+ |-+.++|.||+||+||. ..|.+
T Consensus 368 Fr~G-------~crnLVctDL~TRGIDiqavNvVINFDf------------------pk~aEtYLHRIGRsGRFGhlGlA 422 (459)
T KOG0326|consen 368 FRNG-------KCRNLVCTDLFTRGIDIQAVNVVINFDF------------------PKNAETYLHRIGRSGRFGHLGLA 422 (459)
T ss_pred hhcc-------ccceeeehhhhhcccccceeeEEEecCC------------------CCCHHHHHHHccCCccCCCcceE
Confidence 9999 8899999999999999999999999999 99999999999999999 88999
Q ss_pred EEecchhhhc
Q 004850 413 FRLYTEKSFN 422 (727)
Q Consensus 413 ~~L~t~~~~~ 422 (727)
+.|.|-++-.
T Consensus 423 InLityedrf 432 (459)
T KOG0326|consen 423 INLITYEDRF 432 (459)
T ss_pred EEEEehhhhh
Confidence 9999866543
No 36
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.4e-40 Score=335.09 Aligned_cols=345 Identities=18% Similarity=0.206 Sum_probs=266.7
Q ss_pred CcccCCCCCC-CCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCC-----ccc
Q 004850 40 NSLINRWNGK-PYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-----PDR 113 (727)
Q Consensus 40 ~~~~~~f~~~-~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-----~~~ 113 (727)
+.+..+|++- .--+++.+-+.+.++..|+++|.+.+|.+++|.+++.++.||+|||..++.+-+...+... ...
T Consensus 215 PnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~ 294 (629)
T KOG0336|consen 215 PNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNG 294 (629)
T ss_pred CCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCC
Confidence 3445566663 3346677778888999999999999999999999999999999999988755433322111 122
Q ss_pred cCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeeccccc--cCccccccChHHHHHHHhcccc-ccCCeeEEe
Q 004850 114 RRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSS--ARTVLKYLTDGMLLREAMTDPL-LERYKVIVL 190 (727)
Q Consensus 114 ~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~--~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIl 190 (727)
...+.+.||+++++++.......+ ..+....+..|...|-++... .+..|...|||++.++.+.+.. |..+.+|||
T Consensus 295 p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVl 373 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVL 373 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEe
Confidence 334556666666665433222221 123344455566656555443 3456778999999999998876 999999999
Q ss_pred eccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc--HHHHHhhhcCCCeeeeCCCc-----cceeeeeccCCcccHH
Q 004850 191 DEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYFYGAPLMKVPGRL-----HPVEIFYTQEPERDYL 263 (727)
Q Consensus 191 DEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~--~~~~~~~f~~~p~i~v~g~~-----~~v~~~y~~~~~~~~~ 263 (727)
|||| ++++++|--.+-+.++.-+|+++++|.|||++ +..+++-+...|++...|.+ +.|++++......+++
T Consensus 374 DEAD-rMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~ 452 (629)
T KOG0336|consen 374 DEAD-RMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKL 452 (629)
T ss_pred cchh-hhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHH
Confidence 9999 89999998888888889999999999999996 46666555567888877753 5677777665556665
Q ss_pred HHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCC
Q 004850 264 EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGP 343 (727)
Q Consensus 264 ~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~ 343 (727)
+ .+..+...+ .+..+++||+..+.-++.+..-+.- .++..-.|||+-.|.+|+.+++.|+.|
T Consensus 453 ~-~~~~f~~~m--s~ndKvIiFv~~K~~AD~LSSd~~l---------~gi~~q~lHG~r~Q~DrE~al~~~ksG------ 514 (629)
T KOG0336|consen 453 E-IVQFFVANM--SSNDKVIIFVSRKVMADHLSSDFCL---------KGISSQSLHGNREQSDREMALEDFKSG------ 514 (629)
T ss_pred H-HHHHHHHhc--CCCceEEEEEechhhhhhccchhhh---------cccchhhccCChhhhhHHHHHHhhhcC------
Confidence 3 333333333 3467899999999887777666543 478999999999999999999999999
Q ss_pred CCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhc
Q 004850 344 PGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (727)
Q Consensus 344 ~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~ 422 (727)
..+|+||||+|+||||+|||+||+|||| |-..+.|+||+|||||+ +.|..++|++..+..
T Consensus 515 -~vrILvaTDlaSRGlDv~DiTHV~NyDF------------------P~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~ 575 (629)
T KOG0336|consen 515 -EVRILVATDLASRGLDVPDITHVYNYDF------------------PRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWS 575 (629)
T ss_pred -ceEEEEEechhhcCCCchhcceeeccCC------------------CccHHHHHHHhcccccCCCCcceEEEEehhhHH
Confidence 8999999999999999999999999999 99999999999999999 899999999988764
Q ss_pred c
Q 004850 423 N 423 (727)
Q Consensus 423 ~ 423 (727)
.
T Consensus 576 ~ 576 (629)
T KOG0336|consen 576 M 576 (629)
T ss_pred H
Confidence 3
No 37
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.1e-39 Score=339.26 Aligned_cols=354 Identities=18% Similarity=0.221 Sum_probs=269.2
Q ss_pred cccCCCCCCCCChHHHHHHHHh-cCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCcc-----CCCcccc
Q 004850 41 SLINRWNGKPYSQRYYEILEKR-KSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVD-----IETPDRR 114 (727)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~-~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~-----~~~~~~~ 114 (727)
.....|.++++++.+.+-++.. ++-.+|.+|.+.||.+.+|+++.|-++||||||.++..|+++... +....+.
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~ 212 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGP 212 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCc
Confidence 3445799999999998887654 788999999999999999999999999999999999988876542 1223344
Q ss_pred CceEEEEcccchhhhccHHHHHHHhccccc-cceeceeeeeccccc--cCccccccChHHHHHHHhcccc--ccCCeeEE
Q 004850 115 RKMMIACTQPRRVAAMSVSRRVAEEMDVTI-GEEVGYSIRFEDCSS--ARTVLKYLTDGMLLREAMTDPL--LERYKVIV 189 (727)
Q Consensus 115 ~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~-~~~vg~~~~~~~~~~--~~~~i~~lT~G~l~r~~~~~~l--l~~~~~lI 189 (727)
.+++|+||+++..|++.+++.+.+....-+ |..+|+.-+-..... .+..|.+.|||++.+++..... +++..+||
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlV 292 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLV 292 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEE
Confidence 578899999999999998888877654322 344454433222221 2456778999999999987654 88899999
Q ss_pred eeccCcChhhHHH---HHHHHHHHHH----hC------CCCEEEEEcCccc--HHHHHhhhcCCCeeee-----------
Q 004850 190 LDEAHERTLATDV---LFGLLKEVLK----NR------PDLKLVVMSATLE--AEKFQGYFYGAPLMKV----------- 243 (727)
Q Consensus 190 lDEaher~~~~d~---ll~ll~~l~~----~~------~~~~vil~SATl~--~~~~~~~f~~~p~i~v----------- 243 (727)
|||+| |.++.++ +-.+++.+-. .. +.++-+|+|||+. +..+++.-...|+..-
T Consensus 293 lDEaD-rlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~ 371 (708)
T KOG0348|consen 293 LDEAD-RLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPK 371 (708)
T ss_pred ecchh-HHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcc
Confidence 99999 7888776 3333443311 11 1478899999995 5677765444443221
Q ss_pred --------CC----------CccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhh
Q 004850 244 --------PG----------RLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITN 305 (727)
Q Consensus 244 --------~g----------~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~ 305 (727)
+| -...+.++|..+|..-.+-++...+.+....+...+++||+++.+.|+.-++.+...+..
T Consensus 372 ~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~ 451 (708)
T KOG0348|consen 372 DKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLS 451 (708)
T ss_pred hhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhc
Confidence 01 011234566667777777777777878777777778999999999999999999875432
Q ss_pred ----cC---------CCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCC
Q 004850 306 ----MG---------DQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGF 372 (727)
Q Consensus 306 ----~~---------~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~ 372 (727)
-. ...-+.+++.|||+|.|++|..+|+.|... .+-|++|||||+||||+|+|++||.|+.
T Consensus 452 ~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~-------~~~VLLcTDVAaRGLDlP~V~~vVQYd~ 524 (708)
T KOG0348|consen 452 HLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHS-------RRAVLLCTDVAARGLDLPHVGLVVQYDP 524 (708)
T ss_pred ccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccc-------cceEEEehhhhhccCCCCCcCeEEEeCC
Confidence 00 002256899999999999999999999987 7889999999999999999999999888
Q ss_pred ccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhh
Q 004850 373 AKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (727)
Q Consensus 373 ~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~ 420 (727)
|.+.++|+||+|||+|. +.|.+..|..+.+
T Consensus 525 ------------------P~s~adylHRvGRTARaG~kG~alLfL~P~E 555 (708)
T KOG0348|consen 525 ------------------PFSTADYLHRVGRTARAGEKGEALLFLLPSE 555 (708)
T ss_pred ------------------CCCHHHHHHHhhhhhhccCCCceEEEecccH
Confidence 99999999999999999 7898887765443
No 38
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.4e-37 Score=368.50 Aligned_cols=528 Identities=17% Similarity=0.207 Sum_probs=338.0
Q ss_pred CCCCCCCChHHHHHHHHhcCCCchHHHHHHHHh-hhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcc
Q 004850 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV-LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (727)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~-i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (727)
.|+++++++.+.+.+..+++..++++|.++++. +..|+++++.+|||||||..+..+++.... . ..+.+.++|++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~-~---~~kal~i~P~r 77 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA-R---GGKALYIVPLR 77 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh-c---CCcEEEEeChH
Confidence 478899999999999999999999999999998 889999999999999999998887776541 1 12345556665
Q ss_pred cchhhhccHHHHHHHhccccccceeceeeeeccccccCccccccChHHHHHHHhcc-ccccCCeeEEeeccCcChhh--H
Q 004850 124 PRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTD-PLLERYKVIVLDEAHERTLA--T 200 (727)
Q Consensus 124 p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~-~ll~~~~~lIlDEaher~~~--~ 200 (727)
.+..+.....+++.. .+..++...|...... .......|.++|++++..++... ..+.+++++|+||+|. ..+ .
T Consensus 78 aLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~-~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~-l~d~~r 154 (737)
T PRK02362 78 ALASEKFEEFERFEE-LGVRVGISTGDYDSRD-EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHL-IDSANR 154 (737)
T ss_pred HHHHHHHHHHHHhhc-CCCEEEEEeCCcCccc-cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccc-cCCCcc
Confidence 555444433333221 2444444444321111 11234678899999987766543 3488999999999995 222 1
Q ss_pred H-HHHHHHHHHHHhCCCCEEEEEcCcc-cHHHHHhhhcCCCeeeeCCCccceeee--------eccC----CcccHHHHH
Q 004850 201 D-VLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRLHPVEIF--------YTQE----PERDYLEAA 266 (727)
Q Consensus 201 d-~ll~ll~~l~~~~~~~~vil~SATl-~~~~~~~~f~~~p~i~v~g~~~~v~~~--------y~~~----~~~~~~~~~ 266 (727)
+ .+..++..+....++.|+|.+|||+ +...+++|++.. .+....+..++... +... ..... ...
T Consensus 155 g~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~-~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~-~~~ 232 (737)
T PRK02362 155 GPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAE-LVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSK-DDT 232 (737)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCC-cccCCCCCCCCeeeEecCCeeccccccccCCCccc-hHH
Confidence 2 2333445554445689999999999 577888887532 22211222222111 1110 00011 122
Q ss_pred HHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhh----------------cCCCC-----------CCeEEEEec
Q 004850 267 IRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITN----------------MGDQV-----------GPVKVVPLY 319 (727)
Q Consensus 267 ~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~----------------~~~~~-----------~~~~v~~lh 319 (727)
...+..... ..+++|||++++.+++.++..|...... +.... -...+..+|
T Consensus 233 ~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hH 310 (737)
T PRK02362 233 LNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHH 310 (737)
T ss_pred HHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeec
Confidence 333333332 4679999999999999999988764320 00000 013588899
Q ss_pred CCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHh
Q 004850 320 STLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQ 399 (727)
Q Consensus 320 ~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~q 399 (727)
|+|++.+|..+++.|++| ..+||+||+.+++|||+|++++||+. ...||+..|. .|.+..+|.|
T Consensus 311 agl~~~eR~~ve~~Fr~G-------~i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Q 374 (737)
T PRK02362 311 AGLSREHRELVEDAFRDR-------LIKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQ 374 (737)
T ss_pred CCCCHHHHHHHHHHHHcC-------CCeEEEechhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHH
Confidence 999999999999999999 89999999999999999999999974 3467776544 3999999999
Q ss_pred hhcccCCCC---CceEEEecchhh-----hcccCCCCCCCccccc------CchhhHHHHHHcCC-C---Ccccc---cC
Q 004850 400 RSGRAGRTQ---PGKCFRLYTEKS-----FNNDLQPQTYPEILRS------NLANTVLTLKKLGI-D---DLVHF---DF 458 (727)
Q Consensus 400 R~GRaGR~~---~G~~~~L~t~~~-----~~~~l~~~~~pei~r~------~l~~~~L~lk~~~~-~---~~~~~---~~ 458 (727)
|+|||||.+ .|.||.+....+ |...+. ..|+-..+ .|...++...+.|. . ++.+| .|
T Consensus 375 m~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~--~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf 452 (737)
T PRK02362 375 MAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIW--ADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATF 452 (737)
T ss_pred HhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHh--CCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhCh
Confidence 999999983 499999986531 222121 12332222 24455565555553 2 22222 33
Q ss_pred CCCC------cHHHHHHHHHHHHHcCCcCCCCC---cchhhhhhccCCCChhhhhHHhhcCCCC---ChHHHHHHHHHhc
Q 004850 459 MDPP------APETLMRALEVLNYLGALDDDGN---LTEMGEKMSEFPLDPQMSKMLVESPKYN---CSNEILSISAMLS 526 (727)
Q Consensus 459 ~~~P------~~~~i~~a~~~L~~lgald~~~~---lT~lG~~l~~lPl~p~~~k~ll~~~~~~---c~~~~l~i~a~ls 526 (727)
+-.+ -.+.++.+++.|...|+|+.++. .|++|+.++.++++|..+..+..+..-. ....++.++|...
T Consensus 453 ~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~ 532 (737)
T PRK02362 453 YATQTDDTGRLERVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTP 532 (737)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCc
Confidence 3222 23458899999999999988764 8999999999999999999998775432 2334555555332
Q ss_pred CCCCCCCchHHHHHHHHHH----HHh-CC-----CCCCH------HHHHHHHHHHhhcCCchhhHHhhcCChHHHHHHHH
Q 004850 527 VPNCFVRPREAQKAADEAK----ARF-GH-----IDGDH------LTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADN 590 (727)
Q Consensus 527 ~~~~f~~~~~~~~~~~~~~----~~~-~~-----~~sD~------l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~ 590 (727)
.-+.+.....+.+...... ..+ .. ...|+ +-..-++++|.+.......+.++++....++.+..
T Consensus 533 e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~~gdl~~~~~ 612 (737)
T PRK02362 533 DMYELYLRSGDYEWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEERITERYGVGPGDIRGKVE 612 (737)
T ss_pred cccccccChhHHHHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCchHHHHHHH
Confidence 2222222222222222110 001 00 11121 22234567887666666788888898888877766
Q ss_pred HHHHHHHHHHH
Q 004850 591 VRQQLVRIMAR 601 (727)
Q Consensus 591 i~~ql~~~l~~ 601 (727)
...+|...+.+
T Consensus 613 ~~~~l~~a~~~ 623 (737)
T PRK02362 613 TAEWLLHAAER 623 (737)
T ss_pred HHHHHHHHHHH
Confidence 66666655544
No 39
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.7e-38 Score=359.31 Aligned_cols=341 Identities=18% Similarity=0.207 Sum_probs=255.6
Q ss_pred cccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCC------cccc
Q 004850 41 SLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET------PDRR 114 (727)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~------~~~~ 114 (727)
.....|.++++++.+.+.+.+.++..++++|.++++.+.+|+++++.++||||||+.+..++++...-.. ....
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 3355799999999999999999999999999999999999999999999999999999888776531110 0123
Q ss_pred CceEEEEcccchhhhccHHHHHHHhccccccceeceeee---eccccccCccccccChHHHHHHHhccc-cccCCeeEEe
Q 004850 115 RKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIR---FEDCSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVL 190 (727)
Q Consensus 115 ~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~---~~~~~~~~~~i~~lT~G~l~r~~~~~~-ll~~~~~lIl 190 (727)
+.++++||+++..+....++.+.+..+..+...+|.... ..........|.++|+|+++....... .+.++++||+
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 467788888888887777777766666655555553211 111122346789999999988766544 4899999999
Q ss_pred eccCcChhhHHHHHHHHHHHHHhC---CCCEEEEEcCcccH--HHHHhhhcCCCe-eeeCCCc---cceeeeeccCCccc
Q 004850 191 DEAHERTLATDVLFGLLKEVLKNR---PDLKLVVMSATLEA--EKFQGYFYGAPL-MKVPGRL---HPVEIFYTQEPERD 261 (727)
Q Consensus 191 DEaher~~~~d~ll~ll~~l~~~~---~~~~vil~SATl~~--~~~~~~f~~~p~-i~v~g~~---~~v~~~y~~~~~~~ 261 (727)
||+|. .++.++ ...++.+.... .+.+++++|||+.. ..+++.+...|. +.+.... ..+.+++......+
T Consensus 244 DEah~-l~~~~~-~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 321 (475)
T PRK01297 244 DEADR-MLDMGF-IPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSD 321 (475)
T ss_pred chHHH-HHhccc-HHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchh
Confidence 99994 444443 33344444433 25799999999853 445544444443 3332221 22444444333334
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCC
Q 004850 262 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEG 341 (727)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~ 341 (727)
+.. .+..+......+++|||++++++++.+++.|... ++.+..+||++++++|.++++.|+.|
T Consensus 322 k~~----~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~R~~~~~~Fr~G---- 384 (475)
T PRK01297 322 KYK----LLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD---------GINAAQLSGDVPQHKRIKTLEGFREG---- 384 (475)
T ss_pred HHH----HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHhCC----
Confidence 332 2333333345568999999999999999999763 57899999999999999999999999
Q ss_pred CCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhh
Q 004850 342 GPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (727)
Q Consensus 342 ~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~ 420 (727)
..+||||||++++|||||+|++||++|+ |.|.++|+||+|||||. +.|.++.|+++++
T Consensus 385 ---~~~vLvaT~~l~~GIDi~~v~~VI~~~~------------------P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d 443 (475)
T PRK01297 385 ---KIRVLVATDVAGRGIHIDGISHVINFTL------------------PEDPDDYVHRIGRTGRAGASGVSISFAGEDD 443 (475)
T ss_pred ---CCcEEEEccccccCCcccCCCEEEEeCC------------------CCCHHHHHHhhCccCCCCCCceEEEEecHHH
Confidence 8999999999999999999999999999 99999999999999999 7899999999765
Q ss_pred h
Q 004850 421 F 421 (727)
Q Consensus 421 ~ 421 (727)
.
T Consensus 444 ~ 444 (475)
T PRK01297 444 A 444 (475)
T ss_pred H
Confidence 4
No 40
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.6e-38 Score=352.91 Aligned_cols=342 Identities=16% Similarity=0.241 Sum_probs=252.1
Q ss_pred ccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEE
Q 004850 42 LINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIAC 121 (727)
Q Consensus 42 ~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~ 121 (727)
..++|+++++++.+.+.+...++..++++|.++++.+.+|+++++.||||||||+++..++++..... ....+.++++|
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-~~~~~~lil~P 104 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-LNACQALILAP 104 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-CCCceEEEECC
Confidence 35689999999999999999999999999999999999999999999999999999887777654221 11233566677
Q ss_pred cccchhhhccHHHHHHHhccccccceeceeeeeccc--cccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcChh
Q 004850 122 TQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTL 198 (727)
Q Consensus 122 t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~~ 198 (727)
++++..|.......+.......+...+|.....++. ......|.+.|+|.+...+..+.. +.++++||+||+|. ..
T Consensus 105 t~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~-~~ 183 (401)
T PTZ00424 105 TRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE-ML 183 (401)
T ss_pred CHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH-HH
Confidence 777766665555555554444444444433211111 112357889999999988876554 89999999999994 33
Q ss_pred hHHHHHHHHHHHHH-hCCCCEEEEEcCcccH--HHHHhhhcCCC-eeeeCCC---ccceeeeeccCCcccHHHHHHHHHH
Q 004850 199 ATDVLFGLLKEVLK-NRPDLKLVVMSATLEA--EKFQGYFYGAP-LMKVPGR---LHPVEIFYTQEPERDYLEAAIRTVV 271 (727)
Q Consensus 199 ~~d~ll~ll~~l~~-~~~~~~vil~SATl~~--~~~~~~f~~~p-~i~v~g~---~~~v~~~y~~~~~~~~~~~~~~~l~ 271 (727)
+.++. ..+.++.. ..++.+++++|||++. ..+...+...| .+.+... ...+..+|......++. ...+.
T Consensus 184 ~~~~~-~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ 259 (401)
T PTZ00424 184 SRGFK-GQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWK---FDTLC 259 (401)
T ss_pred hcchH-HHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHH---HHHHH
Confidence 33332 22333333 3457899999999964 33333333333 2333322 22345555544433322 23333
Q ss_pred HHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEe
Q 004850 272 QIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVS 351 (727)
Q Consensus 272 ~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlva 351 (727)
.+.......++|||+++++.++.+++.|... ++.+..+||++++.+|..+++.|++| ..+||||
T Consensus 260 ~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~---------~~~~~~~h~~~~~~~R~~i~~~f~~g-------~~~vLva 323 (401)
T PTZ00424 260 DLYETLTITQAIIYCNTRRKVDYLTKKMHER---------DFTVSCMHGDMDQKDRDLIMREFRSG-------STRVLIT 323 (401)
T ss_pred HHHHhcCCCeEEEEecCcHHHHHHHHHHHHC---------CCcEEEEeCCCCHHHHHHHHHHHHcC-------CCCEEEE
Confidence 4444445678999999999999999998763 57899999999999999999999999 8999999
Q ss_pred cCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhcc
Q 004850 352 TNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (727)
Q Consensus 352 TniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~~ 423 (727)
|+++++|||||+|++||++|+ |.|.++|.||+|||||. +.|.||.|+++++...
T Consensus 324 T~~l~~GiDip~v~~VI~~~~------------------p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~ 378 (401)
T PTZ00424 324 TDLLARGIDVQQVSLVINYDL------------------PASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQ 378 (401)
T ss_pred cccccCCcCcccCCEEEEECC------------------CCCHHHEeecccccccCCCCceEEEEEcHHHHHH
Confidence 999999999999999999998 99999999999999999 7899999999876543
No 41
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.2e-39 Score=342.52 Aligned_cols=364 Identities=15% Similarity=0.140 Sum_probs=280.7
Q ss_pred hhhhhhcccCCCCCCCCcCCCCcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchh
Q 004850 19 SVSAKLVKTNGVGPGAMMNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQI 98 (727)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~ 98 (727)
+....+.+++.+.........+..+..|++..+.+.+...++..++.-++++|+-.|+.|..|.+++++|+||||||.+|
T Consensus 49 ~~~~nfd~~~~i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aF 128 (482)
T KOG0335|consen 49 STGINFDKYNDIPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAF 128 (482)
T ss_pred chhhccCCccceeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHH
Confidence 44446677777777777778888888999888899998889999999999999999999999999999999999999999
Q ss_pred hHHHhcCccCC----C-----ccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeeccc--cccCcccccc
Q 004850 99 PQFVLEGVDIE----T-----PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC--SSARTVLKYL 167 (727)
Q Consensus 99 ~~~ll~~~~~~----~-----~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~l 167 (727)
+.+++...--. . ...++.+++.||+++..|...-++.+.-.........+|...-..+. ......|.++
T Consensus 129 LiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlva 208 (482)
T KOG0335|consen 129 LIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVA 208 (482)
T ss_pred HHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEe
Confidence 98776543100 0 11245678889999999998888888766555544444431111111 2236788899
Q ss_pred ChHHHHHHHhcccc-ccCCeeEEeeccCcChhh-HHHHHHHHHHHHHhC-----CCCEEEEEcCcccH--HHHHhhhcCC
Q 004850 168 TDGMLLREAMTDPL-LERYKVIVLDEAHERTLA-TDVLFGLLKEVLKNR-----PDLKLVVMSATLEA--EKFQGYFYGA 238 (727)
Q Consensus 168 T~G~l~r~~~~~~l-l~~~~~lIlDEaher~~~-~d~ll~ll~~l~~~~-----~~~~vil~SATl~~--~~~~~~f~~~ 238 (727)
|+|++...+-.... |.+.+++|||||| |+++ ++|.-. ++.+.... ..+|.+|||||.+. ...+.+|...
T Consensus 209 TpGrL~d~~e~g~i~l~~~k~~vLDEAD-rMlD~mgF~p~-Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~ 286 (482)
T KOG0335|consen 209 TPGRLKDLIERGKISLDNCKFLVLDEAD-RMLDEMGFEPQ-IRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKD 286 (482)
T ss_pred cCchhhhhhhcceeehhhCcEEEecchH-Hhhhhcccccc-HHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhc
Confidence 99999998877665 9999999999999 7888 665433 33333221 27899999999964 4455555332
Q ss_pred -C-eee---eCCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCC-----CEEEecCCHHHHHHHHHHHHHHHhhcCC
Q 004850 239 -P-LMK---VPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSG-----DILVFLTGEEEIEDACRKITKEITNMGD 308 (727)
Q Consensus 239 -p-~i~---v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g-----~iLVFl~~~~ei~~l~~~L~~~~~~~~~ 308 (727)
- .+. +.+....+.+........++...+++.+.........+ .+|||+.+++.+..+...|...
T Consensus 287 ~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~------ 360 (482)
T KOG0335|consen 287 NYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN------ 360 (482)
T ss_pred cceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC------
Confidence 2 222 22334556666666666666665555544333221244 7999999999999999999863
Q ss_pred CCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccc
Q 004850 309 QVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLL 388 (727)
Q Consensus 309 ~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~ 388 (727)
++...++||..++.+|.+.++.|+.| ...|+||||||+||||||+|+|||||++
T Consensus 361 ---~~~~~sIhg~~tq~er~~al~~Fr~g-------~~pvlVaT~VaaRGlDi~~V~hVInyDm---------------- 414 (482)
T KOG0335|consen 361 ---GYPAKSIHGDRTQIEREQALNDFRNG-------KAPVLVATNVAARGLDIPNVKHVINYDM---------------- 414 (482)
T ss_pred ---CCCceeecchhhhhHHHHHHHHhhcC-------CcceEEEehhhhcCCCCCCCceeEEeec----------------
Confidence 78999999999999999999999999 8899999999999999999999999999
Q ss_pred cccccHhhHHhhhcccCCC-CCceEEEecch
Q 004850 389 VSPISKASAHQRSGRAGRT-QPGKCFRLYTE 418 (727)
Q Consensus 389 ~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~ 418 (727)
|.+..+|+||+|||||+ ..|.++.|++.
T Consensus 415 --P~d~d~YvHRIGRTGR~Gn~G~atsf~n~ 443 (482)
T KOG0335|consen 415 --PADIDDYVHRIGRTGRVGNGGRATSFFNE 443 (482)
T ss_pred --CcchhhHHHhccccccCCCCceeEEEecc
Confidence 99999999999999999 78999999994
No 42
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-38 Score=337.61 Aligned_cols=342 Identities=20% Similarity=0.225 Sum_probs=250.7
Q ss_pred cCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcC-CEEEEEcCCCChhhchhhHHHhcCccC--------CC--c
Q 004850 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKAN-QVIILVGETGSGKTTQIPQFVLEGVDI--------ET--P 111 (727)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g-~~vii~g~TGSGKTt~~~~~ll~~~~~--------~~--~ 111 (727)
+..|.+++++..+...|++.||..|+++|...||++..| .+++..|+||||||++|..|+++...- .+ .
T Consensus 180 vsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~ 259 (731)
T KOG0347|consen 180 VSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSA 259 (731)
T ss_pred hHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHh
Confidence 457999999999999999999999999999999998888 789999999999999999999873311 11 1
Q ss_pred cccC--ceEEEEcccchhhhccHHHHHHHhccccccceeceee--eeccccccCccccccChHHHHHHHhcccc----cc
Q 004850 112 DRRR--KMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSI--RFEDCSSARTVLKYLTDGMLLREAMTDPL----LE 183 (727)
Q Consensus 112 ~~~~--~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~--~~~~~~~~~~~i~~lT~G~l~r~~~~~~l----l~ 183 (727)
...+ ++++.||++++.|+.+-...++...+..+...+|+-. ..+........|++.|||++..++..+.. +.
T Consensus 260 k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k 339 (731)
T KOG0347|consen 260 KYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFK 339 (731)
T ss_pred ccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhh
Confidence 1122 6677788888888888888888888888888887532 12222334678999999999888765543 78
Q ss_pred CCeeEEeeccCcChhhHHH---HHHHHHHHHH--hCCCCEEEEEcCcccHHHHHhhh----c-------CCCe---eeeC
Q 004850 184 RYKVIVLDEAHERTLATDV---LFGLLKEVLK--NRPDLKLVVMSATLEAEKFQGYF----Y-------GAPL---MKVP 244 (727)
Q Consensus 184 ~~~~lIlDEaher~~~~d~---ll~ll~~l~~--~~~~~~vil~SATl~~~~~~~~f----~-------~~p~---i~v~ 244 (727)
++++||+||+| |++..+. +-.+|+.+.. ..+.+|+++||||+........- . +.++ +.--
T Consensus 340 ~vkcLVlDEaD-RmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~i 418 (731)
T KOG0347|consen 340 KVKCLVLDEAD-RMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKI 418 (731)
T ss_pred hceEEEEccHH-HHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHh
Confidence 89999999999 7776554 3334444431 23478999999999642211100 0 0000 0000
Q ss_pred C-CccceeeeeccCCcccHHHHHHHHHHHH-----------hhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCC
Q 004850 245 G-RLHPVEIFYTQEPERDYLEAAIRTVVQI-----------HMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGP 312 (727)
Q Consensus 245 g-~~~~v~~~y~~~~~~~~~~~~~~~l~~i-----------~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~ 312 (727)
| +..| ++.-+ .+...-...+.+.++.. ....-+|..|||||+.+.|.+++-+|... +
T Consensus 419 g~~~kp-kiiD~-t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L---------~ 487 (731)
T KOG0347|consen 419 GFRGKP-KIIDL-TPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNL---------D 487 (731)
T ss_pred CccCCC-eeEec-CcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhc---------C
Confidence 0 0011 00000 01111111111111111 01234799999999999999999999764 6
Q ss_pred eEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccc
Q 004850 313 VKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI 392 (727)
Q Consensus 313 ~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pi 392 (727)
+..++||+.|.|.+|.+.+++|+.. ..-|+||||||+||||||+|.|||+|.. |-
T Consensus 488 i~p~~LHA~M~QKqRLknLEkF~~~-------~~~VLiaTDVAARGLDIp~V~HVIHYqV------------------Pr 542 (731)
T KOG0347|consen 488 IPPLPLHASMIQKQRLKNLEKFKQS-------PSGVLIATDVAARGLDIPGVQHVIHYQV------------------PR 542 (731)
T ss_pred CCCchhhHHHHHHHHHHhHHHHhcC-------CCeEEEeehhhhccCCCCCcceEEEeec------------------CC
Confidence 8899999999999999999999987 6789999999999999999999999999 99
Q ss_pred cHhhHHhhhcccCCC-CCceEEEecchhhh
Q 004850 393 SKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (727)
Q Consensus 393 s~~~~~qR~GRaGR~-~~G~~~~L~t~~~~ 421 (727)
+.+.|+||+|||+|+ ..|....|..+.+.
T Consensus 543 tseiYVHRSGRTARA~~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 543 TSEIYVHRSGRTARANSEGVSVMLCGPQEV 572 (731)
T ss_pred ccceeEecccccccccCCCeEEEEeChHHh
Confidence 999999999999999 88999999988764
No 43
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-37 Score=314.51 Aligned_cols=341 Identities=19% Similarity=0.217 Sum_probs=267.9
Q ss_pred cCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcC--CEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEE
Q 004850 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKAN--QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA 120 (727)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g--~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~ 120 (727)
..+|++++|.+++.+.+-.+++..|+.+|+..+|.++.+ ++++..+.+|+|||++|.+-++...+.... .++.+.++
T Consensus 89 ~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~-~PQ~iCLa 167 (477)
T KOG0332|consen 89 AKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVV-VPQCICLA 167 (477)
T ss_pred cccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcccc-CCCceeeC
Confidence 568999999999999999999999999999999998754 588999999999999999888876643322 23456678
Q ss_pred EcccchhhhccHHHHHHHhccccccceeceeeeecc---ccccCccccccChHHHHHHHhccc--cccCCeeEEeeccCc
Q 004850 121 CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED---CSSARTVLKYLTDGMLLREAMTDP--LLERYKVIVLDEAHE 195 (727)
Q Consensus 121 ~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~---~~~~~~~i~~lT~G~l~r~~~~~~--ll~~~~~lIlDEahe 195 (727)
|+++++.+...|.+...+..+ -...|.++... ......+|...|||..++++..-. .+...+++|+||||
T Consensus 168 PtrELA~Q~~eVv~eMGKf~~----ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD- 242 (477)
T KOG0332|consen 168 PTRELAPQTGEVVEEMGKFTE----LTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEAD- 242 (477)
T ss_pred chHHHHHHHHHHHHHhcCcee----eeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchh-
Confidence 899888888887776666543 23345544332 222356788999999999988733 48999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhCC-CCEEEEEcCccc--HHHHHhhh-cCCCeeeeCC---CccceeeeeccCCcccHHHHHHH
Q 004850 196 RTLATDVLFGLLKEVLKNRP-DLKLVVMSATLE--AEKFQGYF-YGAPLMKVPG---RLHPVEIFYTQEPERDYLEAAIR 268 (727)
Q Consensus 196 r~~~~d~ll~ll~~l~~~~~-~~~vil~SATl~--~~~~~~~f-~~~p~i~v~g---~~~~v~~~y~~~~~~~~~~~~~~ 268 (727)
-++++..+-+.--.+.+..| +.|++++|||.+ +..|+..+ .++.++.+.. ..++|+++|..++.++. ...
T Consensus 243 ~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~---K~~ 319 (477)
T KOG0332|consen 243 VMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDD---KYQ 319 (477)
T ss_pred hhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhh---HHH
Confidence 57887766555555555445 899999999995 46676554 4454555543 35789999999886543 233
Q ss_pred HHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEE
Q 004850 269 TVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKI 348 (727)
Q Consensus 269 ~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kv 348 (727)
.+..++..-.-|..+|||.|++.+.+++..+... +..|..|||+|.-++|..+.+.|+.| ..||
T Consensus 320 ~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~---------Gh~V~~l~G~l~~~~R~~ii~~Fr~g-------~~kV 383 (477)
T KOG0332|consen 320 ALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE---------GHQVSLLHGDLTVEQRAAIIDRFREG-------KEKV 383 (477)
T ss_pred HHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc---------CceeEEeeccchhHHHHHHHHHHhcC-------cceE
Confidence 3444544456789999999999999999999874 78899999999999999999999999 8999
Q ss_pred EEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhh
Q 004850 349 VVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (727)
Q Consensus 349 lvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~ 420 (727)
+|+|||.+||||++.|..||||+++-. |+ .--+.++|.||+|||||. +.|.+|.|...+.
T Consensus 384 LitTnV~ARGiDv~qVs~VvNydlP~~--~~----------~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 384 LITTNVCARGIDVAQVSVVVNYDLPVK--YT----------GEPDYETYLHRIGRTGRFGKKGLAINLVDDKD 444 (477)
T ss_pred EEEechhhcccccceEEEEEecCCccc--cC----------CCCCHHHHHHHhcccccccccceEEEeecccC
Confidence 999999999999999999999999311 11 124678999999999999 8899999987644
No 44
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-37 Score=317.07 Aligned_cols=339 Identities=17% Similarity=0.173 Sum_probs=268.5
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCcc----C-CCccccCceE
Q 004850 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVD----I-ETPDRRRKMM 118 (727)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~----~-~~~~~~~~~~ 118 (727)
.+|++++|.+++.+++.+.||-.++.+|+..||.+++|++++..|.||||||.++..|+++..- . .......+++
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 6899999999999999999999999999999999999999999999999999999988775431 1 1223455788
Q ss_pred EEEcccchhhhccHHHHHHHhccccc-----cceeceeeeeccccccCccccccChHHHHHHHhcccc--ccCCeeEEee
Q 004850 119 IACTQPRRVAAMSVSRRVAEEMDVTI-----GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLD 191 (727)
Q Consensus 119 i~~t~p~~~~~~~v~~~v~~~~~~~~-----~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l--l~~~~~lIlD 191 (727)
++||.++..|+.++.+.+...+...+ .......+.. ........|++.|||.+++++.++.+ +...++||+|
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~-~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS-VALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH-HHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 99999999999999988876654221 1111111000 11223578899999999999999884 8899999999
Q ss_pred ccCcChhhHHHHHHHHHHHHHhCC-CCEEEEEcCcc--cHHHHHhhhcCCCeee-eCCC----ccceeeeeccCCcccHH
Q 004850 192 EAHERTLATDVLFGLLKEVLKNRP-DLKLVVMSATL--EAEKFQGYFYGAPLMK-VPGR----LHPVEIFYTQEPERDYL 263 (727)
Q Consensus 192 Eaher~~~~d~ll~ll~~l~~~~~-~~~vil~SATl--~~~~~~~~f~~~p~i~-v~g~----~~~v~~~y~~~~~~~~~ 263 (727)
|||+ +..-...+-++.+....| ..|.+|||||+ |+..+...|...|++. +... ...+.+|+..+...|++
T Consensus 178 EADL--llsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKf 255 (569)
T KOG0346|consen 178 EADL--LLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKF 255 (569)
T ss_pred hhhh--hhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhH
Confidence 9985 444445555666655444 78999999999 4677888888888753 3222 23478889888888876
Q ss_pred HHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCC
Q 004850 264 EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGP 343 (727)
Q Consensus 264 ~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~ 343 (727)
-.+.. ++++ .--.|++|||+++.+.+-++.-.|++. +++.+.|.|.||...|..++++|..|
T Consensus 256 lllya-llKL--~LI~gKsliFVNtIdr~YrLkLfLeqF---------GiksciLNseLP~NSR~Hii~QFNkG------ 317 (569)
T KOG0346|consen 256 LLLYA-LLKL--RLIRGKSLIFVNTIDRCYRLKLFLEQF---------GIKSCILNSELPANSRCHIIEQFNKG------ 317 (569)
T ss_pred HHHHH-HHHH--HHhcCceEEEEechhhhHHHHHHHHHh---------CcHhhhhcccccccchhhHHHHhhCc------
Confidence 54332 2222 234789999999999999888888774 68899999999999999999999999
Q ss_pred CCcEEEEecCc-----------------------------------cccCcccCCeEEEEcCCCccceeeccccCccccc
Q 004850 344 PGRKIVVSTNI-----------------------------------AETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLL 388 (727)
Q Consensus 344 ~~~kvlvaTni-----------------------------------Ae~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~ 388 (727)
...||||||. ++||||+..|..|||+|+
T Consensus 318 -~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~---------------- 380 (569)
T KOG0346|consen 318 -LYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDF---------------- 380 (569)
T ss_pred -ceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCC----------------
Confidence 8999999992 238999999999999999
Q ss_pred cccccHhhHHhhhcccCCC-CCceEEEecchhhhc
Q 004850 389 VSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (727)
Q Consensus 389 ~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~ 422 (727)
|.+..+|+||+|||||. .+|.+.+|+.+.+..
T Consensus 381 --P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 381 --PETVTSYIHRVGRTARGNNKGTALSFVSPKEEF 413 (569)
T ss_pred --CCchHHHHHhccccccCCCCCceEEEecchHHh
Confidence 99999999999999999 899999999886653
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=8e-35 Score=344.20 Aligned_cols=525 Identities=15% Similarity=0.122 Sum_probs=323.0
Q ss_pred CCCCCCCChHHHHHHHHhcCCCchHHHHHHHHh-hhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcc
Q 004850 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV-LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (727)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~-i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (727)
.|+++++++.+.+.++++++..++++|.++++. +..|+++++++|||||||+.+..+++... ... ..+.+.++|++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l-~~~--~~~~l~l~P~~ 78 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKL-LRE--GGKAVYLVPLK 78 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHH-Hhc--CCeEEEEeChH
Confidence 477889999999999999999999999999986 89999999999999999999887776543 111 12344455554
Q ss_pred cchhhhccHHHHHHH--hccccccceeceeeeeccccccCccccccChHHHHHHHhcc-ccccCCeeEEeeccCcChhh-
Q 004850 124 PRRVAAMSVSRRVAE--EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTD-PLLERYKVIVLDEAHERTLA- 199 (727)
Q Consensus 124 p~~~~~~~v~~~v~~--~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~-~ll~~~~~lIlDEaher~~~- 199 (727)
.+ +.+..+.+.. ..+..++...|.... ......+..|.++|++++..++... ..+.++++||+||+|. ..+
T Consensus 79 aL---a~q~~~~~~~~~~~g~~v~~~~Gd~~~-~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~-l~~~ 153 (720)
T PRK00254 79 AL---AEEKYREFKDWEKLGLRVAMTTGDYDS-TDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHL-IGSY 153 (720)
T ss_pred HH---HHHHHHHHHHHhhcCCEEEEEeCCCCC-chhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCc-cCCc
Confidence 44 4444444432 233444333332211 1111234678899999987766543 3588999999999995 222
Q ss_pred -HHHHHHHHHHHHHhCCCCEEEEEcCcc-cHHHHHhhhcCCCeeeeCCCccceee--eec-----cCCcccH-HHHHHHH
Q 004850 200 -TDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRLHPVEI--FYT-----QEPERDY-LEAAIRT 269 (727)
Q Consensus 200 -~d~ll~ll~~l~~~~~~~~vil~SATl-~~~~~~~~f~~~p~i~v~g~~~~v~~--~y~-----~~~~~~~-~~~~~~~ 269 (727)
.+..++.+-. +...+.|+|++|||+ +...+++|++. +.+....+..|+.. ++. .....+. .......
T Consensus 154 ~rg~~le~il~--~l~~~~qiI~lSATl~n~~~la~wl~~-~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (720)
T PRK00254 154 DRGATLEMILT--HMLGRAQILGLSATVGNAEELAEWLNA-ELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESL 230 (720)
T ss_pred cchHHHHHHHH--hcCcCCcEEEEEccCCCHHHHHHHhCC-ccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHH
Confidence 2222222211 123468999999999 68888888754 33333333333321 111 1111111 1222222
Q ss_pred HHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcC----------------CCC--------CCeEEEEecCCCCHH
Q 004850 270 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMG----------------DQV--------GPVKVVPLYSTLPPA 325 (727)
Q Consensus 270 l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~----------------~~~--------~~~~v~~lh~~l~~~ 325 (727)
+.+... ..+++|||++++..++.++..|...+..+. ... -...+..+||+|+++
T Consensus 231 ~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~ 308 (720)
T PRK00254 231 VYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRT 308 (720)
T ss_pred HHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHH
Confidence 333322 356899999999999988877754321100 000 012488999999999
Q ss_pred HHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccC
Q 004850 326 MQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAG 405 (727)
Q Consensus 326 ~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaG 405 (727)
+|..+.+.|++| ..+|||||+.+++|+|+|++++||... ..|+ ..+.. +.+..+|.||+||||
T Consensus 309 eR~~ve~~F~~G-------~i~VLvaT~tLa~Gvnipa~~vVI~~~----~~~~-~~~~~-----~~~~~~~~Qm~GRAG 371 (720)
T PRK00254 309 ERVLIEDAFREG-------LIKVITATPTLSAGINLPAFRVIIRDT----KRYS-NFGWE-----DIPVLEIQQMMGRAG 371 (720)
T ss_pred HHHHHHHHHHCC-------CCeEEEeCcHHhhhcCCCceEEEECCc----eEcC-CCCce-----eCCHHHHHHhhhccC
Confidence 999999999999 899999999999999999999999633 2343 12221 556789999999999
Q ss_pred CC---CCceEEEecchhh----hcccCCCCCCCccccc------CchhhHHHHHHcC-CCCcc--------cccCCCCCc
Q 004850 406 RT---QPGKCFRLYTEKS----FNNDLQPQTYPEILRS------NLANTVLTLKKLG-IDDLV--------HFDFMDPPA 463 (727)
Q Consensus 406 R~---~~G~~~~L~t~~~----~~~~l~~~~~pei~r~------~l~~~~L~lk~~~-~~~~~--------~~~~~~~P~ 463 (727)
|. ..|.|+.+.+..+ ++..+. ..||-+.. .|...++.....+ +.+.. .|-+...|+
T Consensus 372 R~~~d~~G~~ii~~~~~~~~~~~~~~~~--~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~ 449 (720)
T PRK00254 372 RPKYDEVGEAIIVATTEEPSKLMERYIF--GKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKD 449 (720)
T ss_pred CCCcCCCceEEEEecCcchHHHHHHHHh--CCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcC
Confidence 96 4699999986533 222111 11222111 2223344444443 33221 122222344
Q ss_pred ----HHHHHHHHHHHHHcCCcCCC--C--CcchhhhhhccCCCChhhhhHHhhcCC----CCChHHHHHHHHHhcCCC-C
Q 004850 464 ----PETLMRALEVLNYLGALDDD--G--NLTEMGEKMSEFPLDPQMSKMLVESPK----YNCSNEILSISAMLSVPN-C 530 (727)
Q Consensus 464 ----~~~i~~a~~~L~~lgald~~--~--~lT~lG~~l~~lPl~p~~~k~ll~~~~----~~c~~~~l~i~a~ls~~~-~ 530 (727)
.+.++.++..|...|.|+.+ + ..|++|+.++.++++|..++++..+.. ......++.+++..+.-. +
T Consensus 450 ~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~ 529 (720)
T PRK00254 450 LYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPDMTPL 529 (720)
T ss_pred hHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCcccccc
Confidence 34577889999999998643 3 469999999999999999999876543 234556666665443322 2
Q ss_pred CCCchHHHHHHH----HHHHHhCC--C--C-CCH------HHHHHHHHHHhhcCCchhhHHhhcCChHHHHHHHHHHHHH
Q 004850 531 FVRPREAQKAAD----EAKARFGH--I--D-GDH------LTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQL 595 (727)
Q Consensus 531 f~~~~~~~~~~~----~~~~~~~~--~--~-sD~------l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~ql 595 (727)
..+. ++..... .....+.. + . .|+ +-..-+.++|.+......-+.++++....++.+.+...+|
T Consensus 530 ~~r~-~e~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~l 608 (720)
T PRK00254 530 NYSR-KEMEDLLDEAYEMEDRLYFNIPYWEDYKFQKFLRAFKTAKVLLDWINEVPEGEIVETYNIDPGDLYRILELADWL 608 (720)
T ss_pred Ccch-hhHHHHHHHHHhhcccccccCCcchhhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 2221 1111111 00001110 1 0 122 2223455778765545566777888888888887777777
Q ss_pred HHHHHHc
Q 004850 596 VRIMARF 602 (727)
Q Consensus 596 ~~~l~~~ 602 (727)
...+.++
T Consensus 609 ~~a~~~i 615 (720)
T PRK00254 609 MYSLIEL 615 (720)
T ss_pred HHHHHHH
Confidence 7666543
No 46
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.2e-35 Score=346.71 Aligned_cols=337 Identities=19% Similarity=0.210 Sum_probs=237.5
Q ss_pred CCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhh
Q 004850 50 PYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAA 129 (727)
Q Consensus 50 ~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~ 129 (727)
.+++.+.+.++++++..+|++|.+.++.+.+|+++++.+|||||||.++..++++.. ... ...+.+.++||+++..+.
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l-~~~-~~~~aL~l~PtraLa~q~ 97 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSAL-ADD-PRATALYLAPTKALAADQ 97 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHH-hhC-CCcEEEEEcChHHHHHHH
Confidence 378999999999999999999999999999999999999999999999999888765 221 123456677777766665
Q ss_pred ccHHHHHHHhccccccceeceeeeecc-ccccCccccccChHHHHHHHhc-----cccccCCeeEEeeccCcChhh----
Q 004850 130 MSVSRRVAEEMDVTIGEEVGYSIRFED-CSSARTVLKYLTDGMLLREAMT-----DPLLERYKVIVLDEAHERTLA---- 199 (727)
Q Consensus 130 ~~v~~~v~~~~~~~~~~~vg~~~~~~~-~~~~~~~i~~lT~G~l~r~~~~-----~~ll~~~~~lIlDEaher~~~---- 199 (727)
....+.+. ..+..+....|.....+. ....+..|.+.||+++...++. ..+++++++||+||||. +.+
T Consensus 98 ~~~l~~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~-~~g~fg~ 175 (742)
T TIGR03817 98 LRAVRELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS-YRGVFGS 175 (742)
T ss_pred HHHHHHhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh-ccCccHH
Confidence 55555554 122333222232211111 1123467889999998754443 23488999999999995 322
Q ss_pred -HHHHHHHHHHHHHhC-CCCEEEEEcCcc-cHHHHHhhhcCCCeeeeCCC--ccc-eeeeeccCCc------------cc
Q 004850 200 -TDVLFGLLKEVLKNR-PDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGR--LHP-VEIFYTQEPE------------RD 261 (727)
Q Consensus 200 -~d~ll~ll~~l~~~~-~~~~vil~SATl-~~~~~~~~f~~~p~i~v~g~--~~~-v~~~y~~~~~------------~~ 261 (727)
...++..++.+.... .+.|++++|||+ +...+++.+.+.|+..+... ... ..+.+...+. ..
T Consensus 176 ~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~ 255 (742)
T TIGR03817 176 HVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRS 255 (742)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccc
Confidence 122344444444332 367999999999 45556666655666555332 111 2222211110 11
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCC
Q 004850 262 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEG 341 (727)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~ 341 (727)
........+..+.. ...++|||+++++.++.++..|...+...... .+..+..+||++++++|.++.+.|++|
T Consensus 256 ~~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~-l~~~v~~~hgg~~~~eR~~ie~~f~~G---- 328 (742)
T TIGR03817 256 ASAEAADLLADLVA--EGARTLTFVRSRRGAELVAAIARRLLGEVDPD-LAERVAAYRAGYLPEDRRELERALRDG---- 328 (742)
T ss_pred hHHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccc-cccchhheecCCCHHHHHHHHHHHHcC----
Confidence 11122333333332 25689999999999999999988754322111 135788999999999999999999999
Q ss_pred CCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecch
Q 004850 342 GPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTE 418 (727)
Q Consensus 342 ~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~ 418 (727)
..++|||||++|+|||||+|++||++|+ |-+.++|.||+|||||. +.|.++.+.+.
T Consensus 329 ---~i~vLVaTd~lerGIDI~~vd~VI~~~~------------------P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 329 ---ELLGVATTNALELGVDISGLDAVVIAGF------------------PGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred ---CceEEEECchHhccCCcccccEEEEeCC------------------CCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 8999999999999999999999999999 99999999999999999 78999998863
No 47
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-35 Score=332.25 Aligned_cols=352 Identities=18% Similarity=0.207 Sum_probs=279.2
Q ss_pred CCCCcCCCCcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCC--
Q 004850 32 PGAMMNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIE-- 109 (727)
Q Consensus 32 ~~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~-- 109 (727)
...-....+.++.+|...+++..+...+++.++-+++++|.++||+|..|++|+.+|.||||||..|.+|++-.....
T Consensus 353 i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~ 432 (997)
T KOG0334|consen 353 IKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP 432 (997)
T ss_pred eeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC
Confidence 334444557788999999999999999999999999999999999999999999999999999999988777443211
Q ss_pred --CccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeeccccc--cCccccccChHHHHHHHhcccc----
Q 004850 110 --TPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSS--ARTVLKYLTDGMLLREAMTDPL---- 181 (727)
Q Consensus 110 --~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~--~~~~i~~lT~G~l~r~~~~~~l---- 181 (727)
...++-+++++||+++..|+....+.+.+.++..+...+|..-.-++... ..+.|.+||+|+.++.+.+..-
T Consensus 433 ~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtn 512 (997)
T KOG0334|consen 433 LEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTN 512 (997)
T ss_pred hhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcccc
Confidence 12334467788999999998888888888888777777775433333222 2478899999999998876542
Q ss_pred ccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH--HHHHhhhcCCCeee-eCCCc---cceeeeec
Q 004850 182 LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA--EKFQGYFYGAPLMK-VPGRL---HPVEIFYT 255 (727)
Q Consensus 182 l~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~--~~~~~~f~~~p~i~-v~g~~---~~v~~~y~ 255 (727)
+.++.++|+|||| |+.++.+.=...+.+...+|++|++++|||++. +.++.-....|+-. +.|+. ..|++.+.
T Consensus 513 lrR~t~lv~deaD-rmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~ 591 (997)
T KOG0334|consen 513 LRRVTYLVLDEAD-RMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVR 591 (997)
T ss_pred ccccceeeechhh-hhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEE
Confidence 6677799999999 788887743333333344789999999999974 55665555566643 34432 34666665
Q ss_pred cCC-cccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCC
Q 004850 256 QEP-ERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPA 334 (727)
Q Consensus 256 ~~~-~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~ 334 (727)
.++ ..+++..+..+|-.. ...++++||+..++.++.|.+.|.. .++.+..|||+.++.+|..+.+.|
T Consensus 592 V~~~e~eKf~kL~eLl~e~---~e~~~tiiFv~~qe~~d~l~~~L~~---------ag~~~~slHGgv~q~dR~sti~df 659 (997)
T KOG0334|consen 592 VCAIENEKFLKLLELLGER---YEDGKTIIFVDKQEKADALLRDLQK---------AGYNCDSLHGGVDQHDRSSTIEDF 659 (997)
T ss_pred EecCchHHHHHHHHHHHHH---hhcCCEEEEEcCchHHHHHHHHHHh---------cCcchhhhcCCCchHHHHhHHHHH
Confidence 555 556665555544332 3388999999999999999999985 368888899999999999999999
Q ss_pred CCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEE
Q 004850 335 PPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCF 413 (727)
Q Consensus 335 ~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~ 413 (727)
+++ ..+++|||++++||||+.++..||||++ |--.+.|+||+|||||+ +.|.||
T Consensus 660 K~~-------~~~LLvaTsvvarGLdv~~l~Lvvnyd~------------------pnh~edyvhR~gRTgragrkg~Av 714 (997)
T KOG0334|consen 660 KNG-------VVNLLVATSVVARGLDVKELILVVNYDF------------------PNHYEDYVHRVGRTGRAGRKGAAV 714 (997)
T ss_pred hcc-------CceEEEehhhhhcccccccceEEEEccc------------------chhHHHHHHHhcccccCCccceeE
Confidence 999 8999999999999999999999999999 88888999999999999 889999
Q ss_pred Eecchhhh
Q 004850 414 RLYTEKSF 421 (727)
Q Consensus 414 ~L~t~~~~ 421 (727)
+|.++++.
T Consensus 715 tFi~p~q~ 722 (997)
T KOG0334|consen 715 TFITPDQL 722 (997)
T ss_pred EEeChHHh
Confidence 99998544
No 48
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-34 Score=295.15 Aligned_cols=345 Identities=17% Similarity=0.278 Sum_probs=281.7
Q ss_pred cCCCCcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccC
Q 004850 36 MNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRR 115 (727)
Q Consensus 36 ~~~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~ 115 (727)
.++-+.-.++|++++|.+.+...+-.-|+-.|+.+|+..|..+-.|.++.+.+++|+|||.++..++++..+... ...+
T Consensus 18 esn~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~-ke~q 96 (397)
T KOG0327|consen 18 ESNWNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSV-KETQ 96 (397)
T ss_pred cccHHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcch-HHHH
Confidence 334445567999999999999999999999999999999999999999999999999999999999888875443 2344
Q ss_pred ceEEEEcccchhhhccHHHHHHHhccccccceeceeeee-cc--ccccCccccccChHHHHHHHhcccc-ccCCeeEEee
Q 004850 116 KMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRF-ED--CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLD 191 (727)
Q Consensus 116 ~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~-~~--~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlD 191 (727)
.+.++|+++++.|+..+.+.+...++..+...+|..... +. .......|.+.|||+....+-...+ ....+++++|
T Consensus 97 alilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlD 176 (397)
T KOG0327|consen 97 ALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLD 176 (397)
T ss_pred HHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeec
Confidence 677899999999998888888888888888888865433 22 1223468889999999999888776 5569999999
Q ss_pred ccCcChhhHHHHHHHHHHHHHh-CCCCEEEEEcCcccH--HHHHhhhcCCCeeeeCCC----ccceeeeeccCCcccHHH
Q 004850 192 EAHERTLATDVLFGLLKEVLKN-RPDLKLVVMSATLEA--EKFQGYFYGAPLMKVPGR----LHPVEIFYTQEPERDYLE 264 (727)
Q Consensus 192 Eaher~~~~d~ll~ll~~l~~~-~~~~~vil~SATl~~--~~~~~~f~~~p~i~v~g~----~~~v~~~y~~~~~~~~~~ 264 (727)
|||| ++..+ +.+.+..+.+. .++.|++++|||++. ...++-|...|+.....+ ...++++|.......+
T Consensus 177 EaDE-mLs~g-fkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k-- 252 (397)
T KOG0327|consen 177 EADE-MLSRG-FKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEK-- 252 (397)
T ss_pred chHh-hhccc-hHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeecccccc--
Confidence 9997 44444 44455555443 448899999999964 556677777776544332 3457788877665554
Q ss_pred HHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCC
Q 004850 265 AAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPP 344 (727)
Q Consensus 265 ~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~ 344 (727)
+.++..++. .....+||++|++.+..+...|... ++.+..+||.|.+.+|..++..|+.|
T Consensus 253 --~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~---------~~~~s~~~~d~~q~~R~~~~~ef~~g------- 312 (397)
T KOG0327|consen 253 --LDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAH---------GFTVSAIHGDMEQNERDTLMREFRSG------- 312 (397)
T ss_pred --ccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhC---------CceEEEeecccchhhhhHHHHHhhcC-------
Confidence 445555555 4557899999999999999999543 79999999999999999999999999
Q ss_pred CcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhcc
Q 004850 345 GRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (727)
Q Consensus 345 ~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~~ 423 (727)
..+|+|+|++++|||||.++..||||++ |..+++|+||+||+||. ++|.++.++++.+...
T Consensus 313 ssrvlIttdl~argidv~~~slvinydl------------------P~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~ 374 (397)
T KOG0327|consen 313 SSRVLITTDLLARGIDVQQVSLVVNYDL------------------PARKENYIHRIGRAGRFGRKGVAINFVTEEDVRD 374 (397)
T ss_pred CceEEeeccccccccchhhcceeeeecc------------------ccchhhhhhhcccccccCCCceeeeeehHhhHHH
Confidence 8899999999999999999999999999 99999999999999999 9999999999877654
No 49
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-34 Score=301.90 Aligned_cols=353 Identities=18% Similarity=0.201 Sum_probs=253.0
Q ss_pred cCCCCcccCCCCCCCCChHH----------HHHHHHhcCCCchHHHHHHHHhhh---------cCCEEEEEcCCCChhhc
Q 004850 36 MNNNNSLINRWNGKPYSQRY----------YEILEKRKSLPVWQQKEEFLQVLK---------ANQVIILVGETGSGKTT 96 (727)
Q Consensus 36 ~~~~~~~~~~f~~~~l~~~~----------~~~l~~~~~lp~~~~q~~ii~~i~---------~g~~vii~g~TGSGKTt 96 (727)
+..++.+...|+.++.+... .+++..+++...+++|..+++.+. .+.+++|.+|||||||.
T Consensus 119 ~t~~~nslq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTL 198 (620)
T KOG0350|consen 119 ETAQNNSLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTL 198 (620)
T ss_pred eecCCCceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCcee
Confidence 33444445577878777543 344778899999999999999882 25789999999999999
Q ss_pred hhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceee-eecc--ccc----cCccccccCh
Q 004850 97 QIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSI-RFED--CSS----ARTVLKYLTD 169 (727)
Q Consensus 97 ~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~-~~~~--~~~----~~~~i~~lT~ 169 (727)
.+..|+++-..-......+.++|+||+.+..|+..+.+++....+..++...|-.. ..+. ... ..-.|.+.||
T Consensus 199 aY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTP 278 (620)
T KOG0350|consen 199 AYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATP 278 (620)
T ss_pred eehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCc
Confidence 99998887652222334567889999999999999999998888877766666321 1111 111 1236778999
Q ss_pred HHHHHHHhccc--cccCCeeEEeeccCcChhhHHH------HHHHHHH---------HHHh-------------------
Q 004850 170 GMLLREAMTDP--LLERYKVIVLDEAHERTLATDV------LFGLLKE---------VLKN------------------- 213 (727)
Q Consensus 170 G~l~r~~~~~~--ll~~~~~lIlDEaher~~~~d~------ll~ll~~---------l~~~------------------- 213 (727)
|+|.+++.+.. .|.+.+++|+|||| |.++..+ ++.+++. ++..
T Consensus 279 GRLVDHl~~~k~f~Lk~LrfLVIDEAD-Rll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~ 357 (620)
T KOG0350|consen 279 GRLVDHLNNTKSFDLKHLRFLVIDEAD-RLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKL 357 (620)
T ss_pred hHHHHhccCCCCcchhhceEEEechHH-HHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCc
Confidence 99999998654 39999999999999 6766544 2222211 1110
Q ss_pred CCCCEEEEEcCcc--cHHHHHhhhcCCC-eeeeCCC---ccc----eeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEE
Q 004850 214 RPDLKLVVMSATL--EAEKFQGYFYGAP-LMKVPGR---LHP----VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDIL 283 (727)
Q Consensus 214 ~~~~~vil~SATl--~~~~~~~~f~~~p-~i~v~g~---~~~----v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iL 283 (727)
.+.+.-+++|||+ ++.++.++-.+.| ++.+.+. .|. +.+++......-+.- .+........-.++|
T Consensus 358 ~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl----~~~~lI~~~k~~r~l 433 (620)
T KOG0350|consen 358 YPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPL----AVYALITSNKLNRTL 433 (620)
T ss_pred CchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchH----hHHHHHHHhhcceEE
Confidence 1344567888888 5677776655555 4444421 111 222222222111111 122222223445799
Q ss_pred EecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCC
Q 004850 284 VFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDG 363 (727)
Q Consensus 284 VFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~ 363 (727)
+|+++.+.+.+++..|.-.+. ..+..+-.+.|+++...|.+.++.|..| ...|+||||+.+||||+.|
T Consensus 434 cf~~S~~sa~Rl~~~L~v~~~-----~~~~~~s~~t~~l~~k~r~k~l~~f~~g-------~i~vLIcSD~laRGiDv~~ 501 (620)
T KOG0350|consen 434 CFVNSVSSANRLAHVLKVEFC-----SDNFKVSEFTGQLNGKRRYKMLEKFAKG-------DINVLICSDALARGIDVND 501 (620)
T ss_pred EEecchHHHHHHHHHHHHHhc-----cccchhhhhhhhhhHHHHHHHHHHHhcC-------CceEEEehhhhhcCCcccc
Confidence 999999999999998873332 1356677799999999999999999999 8999999999999999999
Q ss_pred eEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhcc
Q 004850 364 IVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (727)
Q Consensus 364 V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~~ 423 (727)
|+.||||++ |.+..+|+||+|||||+ +.|.||+|.+..+...
T Consensus 502 v~~VINYd~------------------P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~ 544 (620)
T KOG0350|consen 502 VDNVINYDP------------------PASDKTYVHRAGRTARAGQDGYAITLLDKHEKRL 544 (620)
T ss_pred cceEeecCC------------------CchhhHHHHhhcccccccCCceEEEeeccccchH
Confidence 999999999 99999999999999999 8899999999866543
No 50
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.1e-32 Score=321.86 Aligned_cols=329 Identities=15% Similarity=0.161 Sum_probs=220.1
Q ss_pred CCCC--CCCChHHHHHHHH-hcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEE
Q 004850 45 RWNG--KPYSQRYYEILEK-RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIAC 121 (727)
Q Consensus 45 ~f~~--~~l~~~~~~~l~~-~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~ 121 (727)
.|.. ++.+..+...++. .|+....+.|.++|+++..|+++++++|||+|||..|..+.+... ...++|.|
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~-------GiTLVISP 508 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICP-------GITLVISP 508 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcC-------CcEEEEeC
Confidence 3554 4444555554443 477889999999999999999999999999999999888776432 12455555
Q ss_pred cccchhhhccHHHHHHHhccccccceeceeeeec------ccc--ccCccccccChHHHHH--HHhc----cccccCCee
Q 004850 122 TQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFE------DCS--SARTVLKYLTDGMLLR--EAMT----DPLLERYKV 187 (727)
Q Consensus 122 t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~------~~~--~~~~~i~~lT~G~l~r--~~~~----~~ll~~~~~ 187 (727)
+..+. ......+.. .+.......|.....+ ... .....|.|+||+++.. .++. ......+++
T Consensus 509 LiSLm---qDQV~~L~~-~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~Lsl 584 (1195)
T PLN03137 509 LVSLI---QDQIMNLLQ-ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLAR 584 (1195)
T ss_pred HHHHH---HHHHHHHHh-CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccce
Confidence 54442 222222221 2322222222111000 011 1345788999999752 1111 112345889
Q ss_pred EEeeccCcChhhH-HH--HHHHHHHHHHhCCCCEEEEEcCcccHH---HHHhhhcC-CCeeeeCCCccceeeeeccCCcc
Q 004850 188 IVLDEAHERTLAT-DV--LFGLLKEVLKNRPDLKLVVMSATLEAE---KFQGYFYG-APLMKVPGRLHPVEIFYTQEPER 260 (727)
Q Consensus 188 lIlDEaher~~~~-d~--ll~ll~~l~~~~~~~~vil~SATl~~~---~~~~~f~~-~p~i~v~g~~~~v~~~y~~~~~~ 260 (727)
|||||||.-+... +| -...+..+....|+.+++++|||++.. .+.+.+.- .+++...+...| ..+|...+..
T Consensus 585 IVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~Rp-NL~y~Vv~k~ 663 (1195)
T PLN03137 585 FVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRP-NLWYSVVPKT 663 (1195)
T ss_pred eccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCcc-ceEEEEeccc
Confidence 9999999633222 22 122233445556788999999999753 34444432 233333332222 3344333332
Q ss_pred cHHHHHHHHHHHHh-hcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCC
Q 004850 261 DYLEAAIRTVVQIH-MCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSK 339 (727)
Q Consensus 261 ~~~~~~~~~l~~i~-~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~ 339 (727)
... ...+.... .....+..||||.++++++.+++.|... ++.+.++||+|++++|..+++.|..|
T Consensus 664 kk~---le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~---------Gika~~YHAGLs~eeR~~vqe~F~~G-- 729 (1195)
T PLN03137 664 KKC---LEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEF---------GHKAAFYHGSMDPAQRAFVQKQWSKD-- 729 (1195)
T ss_pred hhH---HHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHC---------CCCeeeeeCCCCHHHHHHHHHHHhcC--
Confidence 221 11222222 1223457899999999999999999864 68899999999999999999999999
Q ss_pred CCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecch
Q 004850 340 EGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTE 418 (727)
Q Consensus 340 ~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~ 418 (727)
..+|||||+++++|||+|+|++||++|+ |.|.++|.||+|||||. .+|.|+.||+.
T Consensus 730 -----ei~VLVATdAFGMGIDkPDVR~VIHydl------------------PkSiEsYyQriGRAGRDG~~g~cILlys~ 786 (1195)
T PLN03137 730 -----EINIICATVAFGMGINKPDVRFVIHHSL------------------PKSIEGYHQECGRAGRDGQRSSCVLYYSY 786 (1195)
T ss_pred -----CCcEEEEechhhcCCCccCCcEEEEcCC------------------CCCHHHHHhhhcccCCCCCCceEEEEecH
Confidence 8899999999999999999999999999 99999999999999999 79999999998
Q ss_pred hhhc
Q 004850 419 KSFN 422 (727)
Q Consensus 419 ~~~~ 422 (727)
.++.
T Consensus 787 ~D~~ 790 (1195)
T PLN03137 787 SDYI 790 (1195)
T ss_pred HHHH
Confidence 7764
No 51
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.4e-32 Score=310.33 Aligned_cols=315 Identities=16% Similarity=0.156 Sum_probs=214.6
Q ss_pred HHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHh
Q 004850 60 EKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 60 ~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
+..++..++++|.++++++.+|+++++++|||||||+.+..+.+... ...++++|+.++.. +..+.+..
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~-------~~~lVi~P~~~L~~---dq~~~l~~- 73 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSD-------GITLVISPLISLME---DQVLQLKA- 73 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcC-------CcEEEEecHHHHHH---HHHHHHHH-
Confidence 34577888999999999999999999999999999998877765422 22455666655433 33333332
Q ss_pred ccccccceeceeeee------ccccccCccccccChHHHHHHH--hccc-cccCCeeEEeeccCcChhhH-HH--HHHHH
Q 004850 140 MDVTIGEEVGYSIRF------EDCSSARTVLKYLTDGMLLREA--MTDP-LLERYKVIVLDEAHERTLAT-DV--LFGLL 207 (727)
Q Consensus 140 ~~~~~~~~vg~~~~~------~~~~~~~~~i~~lT~G~l~r~~--~~~~-ll~~~~~lIlDEaher~~~~-d~--ll~ll 207 (727)
.+.......|..... .........+.++||+.+.... ...- ...++++||+||||.-.... ++ .+..+
T Consensus 74 ~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l 153 (470)
T TIGR00614 74 SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKAL 153 (470)
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHH
Confidence 233221111111000 0111224567899999875322 1111 36789999999999633221 11 22333
Q ss_pred HHHHHhCCCCEEEEEcCcccHHH---HHhhhc-CCCeeeeCCCccceeeeeccCCc-ccHHHHHHHHHHHHhhcCCCCCE
Q 004850 208 KEVLKNRPDLKLVVMSATLEAEK---FQGYFY-GAPLMKVPGRLHPVEIFYTQEPE-RDYLEAAIRTVVQIHMCEPSGDI 282 (727)
Q Consensus 208 ~~l~~~~~~~~vil~SATl~~~~---~~~~f~-~~p~i~v~g~~~~v~~~y~~~~~-~~~~~~~~~~l~~i~~~~~~g~i 282 (727)
..+....|+.+++++|||++... +.+.+. ..|.+...+...|. .+|...+. .+.+..+...+.. ..+...+
T Consensus 154 ~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~n-l~~~v~~~~~~~~~~l~~~l~~---~~~~~~~ 229 (470)
T TIGR00614 154 GSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPN-LYYEVRRKTPKILEDLLRFIRK---EFKGKSG 229 (470)
T ss_pred HHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCC-cEEEEEeCCccHHHHHHHHHHH---hcCCCce
Confidence 44555567899999999997543 333332 33444333322221 12221111 1333333333222 2234456
Q ss_pred EEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccC
Q 004850 283 LVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID 362 (727)
Q Consensus 283 LVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp 362 (727)
|||++++++++.+++.|... ++.+..+||+|++++|..+++.|..| ..+|||||+++++|||+|
T Consensus 230 IIF~~s~~~~e~la~~L~~~---------g~~~~~~H~~l~~~eR~~i~~~F~~g-------~~~vLVaT~~~~~GID~p 293 (470)
T TIGR00614 230 IIYCPSRKKSEQVTASLQNL---------GIAAGAYHAGLEISARDDVHHKFQRD-------EIQVVVATVAFGMGINKP 293 (470)
T ss_pred EEEECcHHHHHHHHHHHHhc---------CCCeeEeeCCCCHHHHHHHHHHHHcC-------CCcEEEEechhhccCCcc
Confidence 99999999999999999864 68899999999999999999999999 889999999999999999
Q ss_pred CeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhcc
Q 004850 363 GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (727)
Q Consensus 363 ~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~~ 423 (727)
+|++||++|+ |.|.++|.||+|||||. .+|.|+.+|+..+...
T Consensus 294 ~V~~VI~~~~------------------P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~ 337 (470)
T TIGR00614 294 DVRFVIHYSL------------------PKSMESYYQESGRAGRDGLPSECHLFYAPADINR 337 (470)
T ss_pred cceEEEEeCC------------------CCCHHHHHhhhcCcCCCCCCceEEEEechhHHHH
Confidence 9999999999 99999999999999999 7999999999877643
No 52
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.7e-32 Score=317.75 Aligned_cols=323 Identities=15% Similarity=0.207 Sum_probs=221.0
Q ss_pred CCChHHHHHHHH-hcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhh
Q 004850 50 PYSQRYYEILEK-RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVA 128 (727)
Q Consensus 50 ~l~~~~~~~l~~-~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~ 128 (727)
++++...+++++ .++..++++|.++++++.+|+++++++|||||||+.+..+.+... ...++++|+..+
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~-------g~tlVisPl~sL--- 77 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLD-------GLTLVVSPLISL--- 77 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcC-------CCEEEEecHHHH---
Confidence 344445556655 478889999999999999999999999999999997776655321 124445554443
Q ss_pred hccHHHHHHHhccccccceeceeee------eccccccCccccccChHHHHHHHhccc-cccCCeeEEeeccCcChhhH-
Q 004850 129 AMSVSRRVAEEMDVTIGEEVGYSIR------FEDCSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLAT- 200 (727)
Q Consensus 129 ~~~v~~~v~~~~~~~~~~~vg~~~~------~~~~~~~~~~i~~lT~G~l~r~~~~~~-ll~~~~~lIlDEaher~~~~- 200 (727)
+.+..+.+.. .+.......+.... +.........+.++||+.+........ ...++++||+||||.-+...
T Consensus 78 ~~dqv~~l~~-~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~ 156 (607)
T PRK11057 78 MKDQVDQLLA-NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGH 156 (607)
T ss_pred HHHHHHHHHH-cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccC
Confidence 3333333322 22222111111000 011122345677899998864322222 24578999999999643222
Q ss_pred HH--HHHHHHHHHHhCCCCEEEEEcCcccHHH---HHhhh-cCCCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHHh
Q 004850 201 DV--LFGLLKEVLKNRPDLKLVVMSATLEAEK---FQGYF-YGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIH 274 (727)
Q Consensus 201 d~--ll~ll~~l~~~~~~~~vil~SATl~~~~---~~~~f-~~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~ 274 (727)
++ .+..+..+....|+.+++++|||.+... +...+ ...|.+.+.+...|- ..|...........+ ....
T Consensus 157 ~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~n-l~~~v~~~~~~~~~l----~~~l 231 (607)
T PRK11057 157 DFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPN-IRYTLVEKFKPLDQL----MRYV 231 (607)
T ss_pred cccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCc-ceeeeeeccchHHHH----HHHH
Confidence 11 2334555555667899999999997533 33332 234555554432221 222222222222222 2222
Q ss_pred hcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCc
Q 004850 275 MCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNI 354 (727)
Q Consensus 275 ~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTni 354 (727)
.....+++|||++++++++.+++.|... ++.+.++||+|++++|.++++.|..| ..+|||||++
T Consensus 232 ~~~~~~~~IIFc~tr~~~e~la~~L~~~---------g~~v~~~Ha~l~~~~R~~i~~~F~~g-------~~~VLVaT~a 295 (607)
T PRK11057 232 QEQRGKSGIIYCNSRAKVEDTAARLQSR---------GISAAAYHAGLDNDVRADVQEAFQRD-------DLQIVVATVA 295 (607)
T ss_pred HhcCCCCEEEEECcHHHHHHHHHHHHhC---------CCCEEEecCCCCHHHHHHHHHHHHCC-------CCCEEEEech
Confidence 3345678999999999999999999874 68899999999999999999999998 8899999999
Q ss_pred cccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhc
Q 004850 355 AETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (727)
Q Consensus 355 Ae~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~ 422 (727)
+++|||+|+|++||++|+ |.|.++|.||+|||||. .+|.|+.||+..++.
T Consensus 296 ~~~GIDip~V~~VI~~d~------------------P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~ 346 (607)
T PRK11057 296 FGMGINKPNVRFVVHFDI------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (607)
T ss_pred hhccCCCCCcCEEEEeCC------------------CCCHHHHHHHhhhccCCCCCceEEEEeCHHHHH
Confidence 999999999999999999 99999999999999999 789999999988754
No 53
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=5.3e-33 Score=299.01 Aligned_cols=342 Identities=15% Similarity=0.211 Sum_probs=281.9
Q ss_pred cCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEc
Q 004850 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (727)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t 122 (727)
...|+.+-+...+...|...++-.++++|.++||++..+=+++|.+.+|+|||..|....++..+... ...+.++++||
T Consensus 24 ~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~-~~~q~~Iv~PT 102 (980)
T KOG4284|consen 24 TPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS-SHIQKVIVTPT 102 (980)
T ss_pred CCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCccc-CcceeEEEecc
Confidence 34689998999999999999999999999999999999999999999999999998877777664332 23456788999
Q ss_pred ccchhhhccHHHHHHHh-ccccccceeceeeeecc-ccccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcChhh
Q 004850 123 QPRRVAAMSVSRRVAEE-MDVTIGEEVGYSIRFED-CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA 199 (727)
Q Consensus 123 ~p~~~~~~~v~~~v~~~-~~~~~~~~vg~~~~~~~-~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~~~ 199 (727)
++.++|+.++...++.. .+.++...+|+...-.+ .....++|.+.|||++..+.-.+.+ +++++++||||||. .++
T Consensus 103 REiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADk-L~~ 181 (980)
T KOG4284|consen 103 REIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADK-LMD 181 (980)
T ss_pred hhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHh-hhc
Confidence 99999999888888753 46666667776543322 3335788999999999998888876 99999999999994 677
Q ss_pred HHHHHHHHHHHHHhCC-CCEEEEEcCccc---HHHHHhhhcCCCeeeeCCC---ccceeeeeccCCccc----HHHHHHH
Q 004850 200 TDVLFGLLKEVLKNRP-DLKLVVMSATLE---AEKFQGYFYGAPLMKVPGR---LHPVEIFYTQEPERD----YLEAAIR 268 (727)
Q Consensus 200 ~d~ll~ll~~l~~~~~-~~~vil~SATl~---~~~~~~~f~~~p~i~v~g~---~~~v~~~y~~~~~~~----~~~~~~~ 268 (727)
+..+-+.+..+....| .+|++.+|||.+ .+.++.|+.++.++....+ ++.+++||...+..+ -++..+.
T Consensus 182 t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq 261 (980)
T KOG4284|consen 182 TESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQ 261 (980)
T ss_pred hhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHH
Confidence 7888888888877666 789999999996 3678888887777766543 567888887655432 2333445
Q ss_pred HHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEE
Q 004850 269 TVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKI 348 (727)
Q Consensus 269 ~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kv 348 (727)
.+-++...-+-...|||++....++.++.+|.. .++.+..+.|.|+|.+|..+|...+.- ..+|
T Consensus 262 ~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~s---------sG~d~~~ISgaM~Q~~Rl~a~~~lr~f-------~~rI 325 (980)
T KOG4284|consen 262 KLTHVFKSIPYVQALVFCDQISRAEPIATHLKS---------SGLDVTFISGAMSQKDRLLAVDQLRAF-------RVRI 325 (980)
T ss_pred HHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhc---------cCCCeEEeccccchhHHHHHHHHhhhc-------eEEE
Confidence 555666666667899999999999999999875 379999999999999999999999876 7899
Q ss_pred EEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhh
Q 004850 349 VVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (727)
Q Consensus 349 lvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~ 420 (727)
|||||+.+||||-|+|..|||-|. |.+.++|.||+|||||. ..|.+++|...+.
T Consensus 326 LVsTDLtaRGIDa~~vNLVVNiD~------------------p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 326 LVSTDLTARGIDADNVNLVVNIDA------------------PADEETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred EEecchhhccCCccccceEEecCC------------------CcchHHHHHHhhhcccccccceeEEEeccch
Confidence 999999999999999999999998 99999999999999999 7799999986544
No 54
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=9.5e-32 Score=310.40 Aligned_cols=358 Identities=18% Similarity=0.188 Sum_probs=217.9
Q ss_pred cCCCchHHHHHHHHhhhcCC-EEEEEcCCCChhhchhhHHHhcCccCCCccccCceE-EEEcccchhhhccHHHHHHHhc
Q 004850 63 KSLPVWQQKEEFLQVLKANQ-VIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMM-IACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 63 ~~lp~~~~q~~ii~~i~~g~-~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~-i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
|+. |+++|.++++.+..|+ ++++.+|||||||.++..+++... . .....+.++ +++++++..|+...++.+++.+
T Consensus 13 G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~-~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l 89 (844)
T TIGR02621 13 GYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-I-GAKVPRRLVYVVNRRTVVDQVTEEAEKIGERL 89 (844)
T ss_pred CCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-c-cccccceEEEeCchHHHHHHHHHHHHHHHHHh
Confidence 554 8999999999999998 677789999999997664444211 1 112233444 3478888888888888887654
Q ss_pred c-----------------------ccccceeceeeeecccc--ccCccccccChHHHHHHHhc-------------cccc
Q 004850 141 D-----------------------VTIGEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMT-------------DPLL 182 (727)
Q Consensus 141 ~-----------------------~~~~~~vg~~~~~~~~~--~~~~~i~~lT~G~l~r~~~~-------------~~ll 182 (727)
. +++...+|......+.. .....|.+.|..++..-.+. -.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L 169 (844)
T TIGR02621 90 PDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFL 169 (844)
T ss_pred cccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhh
Confidence 1 33334445432212221 12456788884433322221 0026
Q ss_pred cCCeeEEeeccCcChhhHHHHHHHHHHHHHhCC---CCEEEEEcCcccH--HHHHhhhcCCC-eeeeCCCc---cceeee
Q 004850 183 ERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP---DLKLVVMSATLEA--EKFQGYFYGAP-LMKVPGRL---HPVEIF 253 (727)
Q Consensus 183 ~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~---~~~vil~SATl~~--~~~~~~f~~~p-~i~v~g~~---~~v~~~ 253 (727)
.+.++|||||||+++-..+.+..+++.+. ..+ ++|+++||||++. ..+...+...+ .+.+.... ..+.+
T Consensus 170 ~~v~~LVLDEADLd~gF~~~l~~Il~~l~-rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q- 247 (844)
T TIGR02621 170 GQDALIVHDEAHLEPAFQELLKQIMNEQQ-RPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVK- 247 (844)
T ss_pred ccceEEEEehhhhccccHHHHHHHHHhcc-cCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEE-
Confidence 88999999999965544444444444321 111 3699999999964 33444443333 23332211 12233
Q ss_pred eccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHh-----
Q 004850 254 YTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQ----- 328 (727)
Q Consensus 254 y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~----- 328 (727)
|...+...++...+..+..+.. ...+++||||+|+++++.+++.|.+. ++ ..|||.|++.+|.
T Consensus 248 ~v~v~~e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~---------g~--~lLHG~m~q~dR~~~~~~ 315 (844)
T TIGR02621 248 LVPPSDEKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKE---------KF--ELLTGTLRGAERDDLVKK 315 (844)
T ss_pred EEecChHHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhc---------CC--eEeeCCCCHHHHhhHHHH
Confidence 3333333344444444433332 45678999999999999999999763 33 8999999999999
Q ss_pred hhcCCCCC----CCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhccc
Q 004850 329 KIFEPAPP----PSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRA 404 (727)
Q Consensus 329 ~~~~~~~~----g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRa 404 (727)
++++.|++ +.........+||||||++|+||||+. ++||+... | .++|+||+||+
T Consensus 316 ~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~a------------------P--~esyIQRiGRt 374 (844)
T TIGR02621 316 EIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLA------------------P--FESMQQRFGRV 374 (844)
T ss_pred HHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCC------------------C--HHHHHHHhccc
Confidence 77888876 310001123689999999999999997 67776433 5 48999999999
Q ss_pred CCC-CC-ceEEEecchhhhcccCC-CCCCCcccccCchhhHHHHHHcCCCCcccccCC
Q 004850 405 GRT-QP-GKCFRLYTEKSFNNDLQ-PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFM 459 (727)
Q Consensus 405 GR~-~~-G~~~~L~t~~~~~~~l~-~~~~pei~r~~l~~~~L~lk~~~~~~~~~~~~~ 459 (727)
||. +. |..+.+++.+ +...-. ..--|++++..+..+.+..+-.|..+...|.++
T Consensus 375 gR~G~~~~~~i~vv~~~-~~~~~~~~vY~~~~l~~t~~~L~~~~~~~~~~~~~al~~l 431 (844)
T TIGR02621 375 NRFGELQACQIAVVHLD-LGKDQDFDVYGKKIDKSTWSTLKKLQQLKGKNKRAALGVL 431 (844)
T ss_pred CCCCCCCCceEEEEeec-cCCCcccCCCCHHHHHHHHHHHHHHHhccccCCHHHHhhc
Confidence 999 43 4445555432 211011 111357777666655555544444333334333
No 55
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=7.5e-33 Score=286.23 Aligned_cols=339 Identities=17% Similarity=0.204 Sum_probs=266.4
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcc
Q 004850 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (727)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (727)
..|..++|+....+++.+.++..++++|.+.+|.|+++++++..|-||||||.++..+.++...-......+++++.|++
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilsptr 100 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTR 100 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcH
Confidence 47999999999999999999999999999999999999999999999999999999998876532223335678889999
Q ss_pred cchhhhccHHHHHHHhccccccceeceeeeeccccc--cCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcChhhH
Q 004850 124 PRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSS--ARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLAT 200 (727)
Q Consensus 124 p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~--~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~~~~ 200 (727)
++.+|+..+.+.+++..+......+|+....++... .+..++..|||+++.+.....+ |+.+.++|+||+| |...+
T Consensus 101 eLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfem 179 (529)
T KOG0337|consen 101 ELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFEM 179 (529)
T ss_pred HHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHhh
Confidence 999999999999998887776667776533333322 3577788999999876655444 8999999999998 66666
Q ss_pred HHHHHHHHHHHHhCC-CCEEEEEcCcccHH--HHHhhhcCCCeee---eCCCc-cceeeeeccCCcccHHHHHHHHHHHH
Q 004850 201 DVLFGLLKEVLKNRP-DLKLVVMSATLEAE--KFQGYFYGAPLMK---VPGRL-HPVEIFYTQEPERDYLEAAIRTVVQI 273 (727)
Q Consensus 201 d~ll~ll~~l~~~~~-~~~vil~SATl~~~--~~~~~f~~~p~i~---v~g~~-~~v~~~y~~~~~~~~~~~~~~~l~~i 273 (727)
+|- +.+.+++.+.| ++|+++||||++-. .|++--...|+.. ++.+. ..+++.|......++..+++..+-.+
T Consensus 180 gfq-eql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~ 258 (529)
T KOG0337|consen 180 GFQ-EQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGR 258 (529)
T ss_pred hhH-HHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhcc
Confidence 554 34444444444 78999999999743 5554433444432 23332 23455666555555554444332222
Q ss_pred hhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecC
Q 004850 274 HMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 353 (727)
Q Consensus 274 ~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTn 353 (727)
. .+...+||++++..++.+...|+.. ++..-.+||+|++.-|..-+..|..+ +-.+++.||
T Consensus 259 ~---~~~~t~vf~~tk~hve~~~~ll~~~---------g~~~s~iysslD~~aRk~~~~~F~~~-------k~~~lvvTd 319 (529)
T KOG0337|consen 259 I---KDKQTIVFVATKHHVEYVRGLLRDF---------GGEGSDIYSSLDQEARKINGRDFRGR-------KTSILVVTD 319 (529)
T ss_pred c---cccceeEEecccchHHHHHHHHHhc---------CCCccccccccChHhhhhccccccCC-------ccceEEEeh
Confidence 1 2457999999999999999998874 57778899999999999999999988 788999999
Q ss_pred ccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhh
Q 004850 354 IAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (727)
Q Consensus 354 iAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~ 421 (727)
+|+||+|||...-|||+++ |.+..-++||+||+.|+ +.|.+|.++...+.
T Consensus 320 vaaRG~diplldnvinyd~------------------p~~~klFvhRVgr~aragrtg~aYs~V~~~~~ 370 (529)
T KOG0337|consen 320 VAARGLDIPLLDNVINYDF------------------PPDDKLFVHRVGRVARAGRTGRAYSLVASTDD 370 (529)
T ss_pred hhhccCCCccccccccccC------------------CCCCceEEEEecchhhccccceEEEEEecccc
Confidence 9999999999999999999 88889999999999999 79999999987654
No 56
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=2.9e-32 Score=293.98 Aligned_cols=354 Identities=15% Similarity=0.171 Sum_probs=259.1
Q ss_pred CCCCcCCCCcccCCCCCC----CCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCcc
Q 004850 32 PGAMMNNNNSLINRWNGK----PYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVD 107 (727)
Q Consensus 32 ~~~~~~~~~~~~~~f~~~----~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~ 107 (727)
...-....+.++.+|.++ ..++++.+.+...++.-++++|.+++|.+..+++++.++|||||||.++..+++....
T Consensus 120 ~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~ 199 (593)
T KOG0344|consen 120 INVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLK 199 (593)
T ss_pred eeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHH
Confidence 344444556777888874 4567888888899999999999999999999999999999999999999998887653
Q ss_pred CCC----ccccCceEEEEcccchhhhccHHHHHH--Hhccccccceeceee----eeccccccCccccccChHHHHHHHh
Q 004850 108 IET----PDRRRKMMIACTQPRRVAAMSVSRRVA--EEMDVTIGEEVGYSI----RFEDCSSARTVLKYLTDGMLLREAM 177 (727)
Q Consensus 108 ~~~----~~~~~~~~i~~t~p~~~~~~~v~~~v~--~~~~~~~~~~vg~~~----~~~~~~~~~~~i~~lT~G~l~r~~~ 177 (727)
... ..+.+++++.|+++++.+.......+. .+++...... .|.. ...........+...||-++..++-
T Consensus 200 ~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~-~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~ 278 (593)
T KOG0344|consen 200 DLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQF-SKPAYPSQKPAFLSDEKYDILISTPMRIVGLLG 278 (593)
T ss_pred HhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhc-ccccchhhccchhHHHHHHHHhcCHHHHHHHhc
Confidence 222 233456677788887777666655555 2222211110 1110 0001111244566789999888777
Q ss_pred ccc---cccCCeeEEeeccCcChhhHHHHHHHHHHHHH--hCCCCEEEEEcCccc--HHHHHhhhcCCCeeeeCCCc---
Q 004850 178 TDP---LLERYKVIVLDEAHERTLATDVLFGLLKEVLK--NRPDLKLVVMSATLE--AEKFQGYFYGAPLMKVPGRL--- 247 (727)
Q Consensus 178 ~~~---ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~--~~~~~~vil~SATl~--~~~~~~~f~~~p~i~v~g~~--- 247 (727)
..+ .+.++.++|+||||. ..+...+...+..+.. ..|+.++-+||||++ ++.++......++..+-|..
T Consensus 279 ~~~~~idl~~V~~lV~dEaD~-lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa 357 (593)
T KOG0344|consen 279 LGKLNIDLSKVEWLVVDEADL-LFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSA 357 (593)
T ss_pred CCCccchhheeeeEeechHHh-hhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhH
Confidence 665 489999999999983 4444356566655554 236889999999995 57888776655555555532
Q ss_pred -cceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHH
Q 004850 248 -HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAM 326 (727)
Q Consensus 248 -~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 326 (727)
..|++....+....- .+-.+.++....-+.++|||+-+.+.+..+...|.. ..++.+-.+||..++.+
T Consensus 358 ~~~V~QelvF~gse~~---K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~--------~~~i~v~vIh~e~~~~q 426 (593)
T KOG0344|consen 358 NETVDQELVFCGSEKG---KLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEI--------YDNINVDVIHGERSQKQ 426 (593)
T ss_pred hhhhhhhheeeecchh---HHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhh--------ccCcceeeEecccchhH
Confidence 234444444332211 122333343334466899999999998888888852 24788999999999999
Q ss_pred HhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCC
Q 004850 327 QQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGR 406 (727)
Q Consensus 327 r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR 406 (727)
|..+++.|+.| +.+|++|||+.+||||+.||..|||||+ |.|.-+|+||+||+||
T Consensus 427 rde~~~~FR~g-------~IwvLicTdll~RGiDf~gvn~VInyD~------------------p~s~~syihrIGRtgR 481 (593)
T KOG0344|consen 427 RDETMERFRIG-------KIWVLICTDLLARGIDFKGVNLVINYDF------------------PQSDLSYIHRIGRTGR 481 (593)
T ss_pred HHHHHHHHhcc-------CeeEEEehhhhhccccccCcceEEecCC------------------CchhHHHHHHhhccCC
Confidence 99999999999 9999999999999999999999999999 9999999999999999
Q ss_pred C-CCceEEEecchhhhcc
Q 004850 407 T-QPGKCFRLYTEKSFNN 423 (727)
Q Consensus 407 ~-~~G~~~~L~t~~~~~~ 423 (727)
+ ++|.+|+|||+++...
T Consensus 482 ag~~g~Aitfytd~d~~~ 499 (593)
T KOG0344|consen 482 AGRSGKAITFYTDQDMPR 499 (593)
T ss_pred CCCCcceEEEeccccchh
Confidence 9 8899999999966543
No 57
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.97 E-value=6.6e-30 Score=296.60 Aligned_cols=311 Identities=14% Similarity=0.160 Sum_probs=212.4
Q ss_pred HhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 61 KRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 61 ~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
..|+....+.|.++++++..|+++++++|||+|||+.+..+.+... ...++++ |+.....+..+.+.. .
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~-------g~~lVis---Pl~sL~~dq~~~l~~-~ 76 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLK-------GLTVVIS---PLISLMKDQVDQLRA-A 76 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcC-------CcEEEEc---CCHHHHHHHHHHHHH-c
Confidence 3578888999999999999999999999999999998877665321 1133343 444333333444432 2
Q ss_pred cccccceeceeeeec-------cccccCccccccChHHHHHHHhccc-cccCCeeEEeeccCcChhhH-HH--HHHHHHH
Q 004850 141 DVTIGEEVGYSIRFE-------DCSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLAT-DV--LFGLLKE 209 (727)
Q Consensus 141 ~~~~~~~vg~~~~~~-------~~~~~~~~i~~lT~G~l~r~~~~~~-ll~~~~~lIlDEaher~~~~-d~--ll~ll~~ 209 (727)
+..+.. ++...... ........+.++||+.+......+. ...++++||+||||.-+... ++ .+..+..
T Consensus 77 gi~~~~-~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~ 155 (591)
T TIGR01389 77 GVAAAY-LNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGS 155 (591)
T ss_pred CCcEEE-EeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHH
Confidence 332211 11111000 0112234677899998864332222 25689999999999643221 12 2334444
Q ss_pred HHHhCCCCEEEEEcCcccHHH---HHhhhc-CCCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEe
Q 004850 210 VLKNRPDLKLVVMSATLEAEK---FQGYFY-GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVF 285 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~~~---~~~~f~-~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF 285 (727)
+....|+..++++|||.+... +..++. ..+.+.+.+... ...+|......+....+... ......++.|||
T Consensus 156 l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r-~nl~~~v~~~~~~~~~l~~~----l~~~~~~~~IIf 230 (591)
T TIGR01389 156 LAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDR-PNLRFSVVKKNNKQKFLLDY----LKKHRGQSGIIY 230 (591)
T ss_pred HHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCC-CCcEEEEEeCCCHHHHHHHH----HHhcCCCCEEEE
Confidence 555566777999999997543 344443 223333332211 22333322223333333322 222335689999
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeE
Q 004850 286 LTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIV 365 (727)
Q Consensus 286 l~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~ 365 (727)
++++++++.+++.|... ++.+.++||+|+.++|..+++.|..| ..+|||||+++++|||+|+|+
T Consensus 231 ~~sr~~~e~la~~L~~~---------g~~~~~~H~~l~~~~R~~i~~~F~~g-------~~~vlVaT~a~~~GID~p~v~ 294 (591)
T TIGR01389 231 ASSRKKVEELAERLESQ---------GISALAYHAGLSNKVRAENQEDFLYD-------DVKVMVATNAFGMGIDKPNVR 294 (591)
T ss_pred ECcHHHHHHHHHHHHhC---------CCCEEEEECCCCHHHHHHHHHHHHcC-------CCcEEEEechhhccCcCCCCC
Confidence 99999999999999763 67899999999999999999999998 789999999999999999999
Q ss_pred EEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhc
Q 004850 366 YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (727)
Q Consensus 366 ~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~ 422 (727)
+||++|+ |.|.++|.||+|||||. .+|.|+.+|+..+..
T Consensus 295 ~VI~~~~------------------p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 295 FVIHYDM------------------PGNLESYYQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred EEEEcCC------------------CCCHHHHhhhhccccCCCCCceEEEecCHHHHH
Confidence 9999999 99999999999999999 789999999987753
No 58
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.97 E-value=1.6e-29 Score=302.80 Aligned_cols=333 Identities=19% Similarity=0.187 Sum_probs=216.3
Q ss_pred CChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCC--ccccCceEEEEcccchhh
Q 004850 51 YSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET--PDRRRKMMIACTQPRRVA 128 (727)
Q Consensus 51 l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~--~~~~~~~~i~~t~p~~~~ 128 (727)
+++.+.+.+.+ ++-.++++|.++++.+.+|+++++++|||||||.++..++++...... .....++.++...|++..
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56777787766 566799999999999999999999999999999998887775431100 000112223333355555
Q ss_pred hccHHHHHHH----------hccccc-----cceeceeeeecc--ccccCccccccChHHHHHHHhccc---cccCCeeE
Q 004850 129 AMSVSRRVAE----------EMDVTI-----GEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDP---LLERYKVI 188 (727)
Q Consensus 129 ~~~v~~~v~~----------~~~~~~-----~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~---ll~~~~~l 188 (727)
+.++.+++.. ..+... +...|.....+. .......|.++||+.+..++.... .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 5554444321 112211 111121111110 011245788999999876654332 47899999
Q ss_pred EeeccCcChhhH--HH-HHHHHHHHHHhC-CCCEEEEEcCccc-HHHHHhhhcCC-------CeeeeCCC---ccceeee
Q 004850 189 VLDEAHERTLAT--DV-LFGLLKEVLKNR-PDLKLVVMSATLE-AEKFQGYFYGA-------PLMKVPGR---LHPVEIF 253 (727)
Q Consensus 189 IlDEaher~~~~--d~-ll~ll~~l~~~~-~~~~vil~SATl~-~~~~~~~f~~~-------p~i~v~g~---~~~v~~~ 253 (727)
|+||+|. ..+. +. +...+..+.... ++.++|++|||+. .+.+++++.+. ++..+.+. ..++.+.
T Consensus 177 VIDE~H~-l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~ 255 (876)
T PRK13767 177 IVDEIHS-LAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVI 255 (876)
T ss_pred EEechhh-hccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEe
Confidence 9999995 2221 11 222333333222 4789999999994 56777776532 22222221 1222221
Q ss_pred ecc-----CCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHh
Q 004850 254 YTQ-----EPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQ 328 (727)
Q Consensus 254 y~~-----~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 328 (727)
... .............+..... ..+++|||++|+..++.++..|....... ..+..+..+||+|++++|.
T Consensus 256 ~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~---~~~~~i~~hHg~ls~~~R~ 330 (876)
T PRK13767 256 SPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEE---YDEDNIGAHHSSLSREVRL 330 (876)
T ss_pred ccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhh---ccccceeeeeCCCCHHHHH
Confidence 110 1111111223333333332 35689999999999999999998743110 1235789999999999999
Q ss_pred hhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-
Q 004850 329 KIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT- 407 (727)
Q Consensus 329 ~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~- 407 (727)
.+++.|++| ..+|||||+++|+|||||+|++||++|. |.|.++|+||+|||||.
T Consensus 331 ~ve~~fk~G-------~i~vLVaTs~Le~GIDip~Vd~VI~~~~------------------P~sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 331 EVEEKLKRG-------ELKVVVSSTSLELGIDIGYIDLVVLLGS------------------PKSVSRLLQRIGRAGHRL 385 (876)
T ss_pred HHHHHHHcC-------CCeEEEECChHHhcCCCCCCcEEEEeCC------------------CCCHHHHHHhcccCCCCC
Confidence 999999999 8899999999999999999999999998 99999999999999986
Q ss_pred ---CCceEEEe
Q 004850 408 ---QPGKCFRL 415 (727)
Q Consensus 408 ---~~G~~~~L 415 (727)
..|.+|..
T Consensus 386 g~~~~g~ii~~ 396 (876)
T PRK13767 386 GEVSKGRIIVV 396 (876)
T ss_pred CCCCcEEEEEc
Confidence 24777765
No 59
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.96 E-value=4.2e-29 Score=296.45 Aligned_cols=315 Identities=15% Similarity=0.174 Sum_probs=212.0
Q ss_pred hHHHHHHHH-hcCCCchHHHHHHHHhhhcC------CEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccc
Q 004850 53 QRYYEILEK-RKSLPVWQQKEEFLQVLKAN------QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPR 125 (727)
Q Consensus 53 ~~~~~~l~~-~~~lp~~~~q~~ii~~i~~g------~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~ 125 (727)
..+.+.+.. .++ .+++.|.++++.+.++ .+.+++|+||||||..+..+++.... . ..+.++++||..+
T Consensus 438 ~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~-~---g~qvlvLvPT~~L 512 (926)
T TIGR00580 438 LEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL-D---GKQVAVLVPTTLL 512 (926)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH-h---CCeEEEEeCcHHH
Confidence 334343433 455 4699999999999875 68899999999999988776664431 1 1346667788777
Q ss_pred hhhhccHHHHHHHhccccccceeceeeeec------cccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhh
Q 004850 126 RVAAMSVSRRVAEEMDVTIGEEVGYSIRFE------DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLA 199 (727)
Q Consensus 126 ~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~------~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~ 199 (727)
+.|....+.......+..+....|.....+ .....+..|.+.|+.. +..+..+.++++||+||+|. ..
T Consensus 513 A~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~~~v~f~~L~llVIDEahr--fg 586 (926)
T TIGR00580 513 AQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQKDVKFKDLGLLIIDEEQR--FG 586 (926)
T ss_pred HHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hhCCCCcccCCEEEeecccc--cc
Confidence 777666555544434433333323211001 0111235677888842 22334588999999999995 22
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCcccHHHHHhhh---cCCCeeeeC-CCccceeeeeccCCcccHHHHHHHHHHHHhh
Q 004850 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYF---YGAPLMKVP-GRLHPVEIFYTQEPERDYLEAAIRTVVQIHM 275 (727)
Q Consensus 200 ~d~ll~ll~~l~~~~~~~~vil~SATl~~~~~~~~f---~~~p~i~v~-g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~ 275 (727)
.. ....++ ...++.++++||||.....+...+ .+.-++..+ ....|++.++..... .. ....+....
T Consensus 587 v~-~~~~L~---~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~-~~---i~~~i~~el- 657 (926)
T TIGR00580 587 VK-QKEKLK---ELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDP-EL---VREAIRREL- 657 (926)
T ss_pred hh-HHHHHH---hcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCH-HH---HHHHHHHHH-
Confidence 11 222222 234578999999998654443221 122233332 223467776654321 11 112222222
Q ss_pred cCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCcc
Q 004850 276 CEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIA 355 (727)
Q Consensus 276 ~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniA 355 (727)
...+.++||+|+.++++.+++.|++.. +++.+..+||+|++.+|.++++.|++| +.+|||||+++
T Consensus 658 -~~g~qv~if~n~i~~~e~l~~~L~~~~-------p~~~v~~lHG~m~~~eRe~im~~F~~G-------k~~ILVaT~ii 722 (926)
T TIGR00580 658 -LRGGQVFYVHNRIESIEKLATQLRELV-------PEARIAIAHGQMTENELEEVMLEFYKG-------EFQVLVCTTII 722 (926)
T ss_pred -HcCCeEEEEECCcHHHHHHHHHHHHhC-------CCCeEEEecCCCCHHHHHHHHHHHHcC-------CCCEEEECChh
Confidence 235789999999999999999998752 468899999999999999999999999 89999999999
Q ss_pred ccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchh
Q 004850 356 ETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEK 419 (727)
Q Consensus 356 e~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~ 419 (727)
|+|||||+|++||.++.. .-+.++|.||+||+||. +.|.||.|++..
T Consensus 723 e~GIDIp~v~~VIi~~a~-----------------~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 723 ETGIDIPNANTIIIERAD-----------------KFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred hcccccccCCEEEEecCC-----------------CCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 999999999999976651 12456789999999999 899999999754
No 60
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.96 E-value=9.3e-29 Score=299.41 Aligned_cols=309 Identities=15% Similarity=0.192 Sum_probs=205.4
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHhhhcC------CEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccch
Q 004850 53 QRYYEILEKRKSLPVWQQKEEFLQVLKAN------QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRR 126 (727)
Q Consensus 53 ~~~~~~l~~~~~lp~~~~q~~ii~~i~~g------~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~ 126 (727)
.++.+......+ .+++.|.++++.+..+ .+++++|+||||||..+....+... . ...+.++++||+.++
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~--~--~g~qvlvLvPT~eLA 662 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV--E--NHKQVAVLVPTTLLA 662 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH--H--cCCeEEEEeCcHHHH
Confidence 344555555555 6899999999999887 7899999999999986654443221 1 113355667776666
Q ss_pred hhhccHHHHHHHhccccccceeceeeeeccc------cccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhH
Q 004850 127 VAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC------SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLAT 200 (727)
Q Consensus 127 ~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~------~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~ 200 (727)
.|............+..+....|.....+.. ......|.+.|++.+. ....+.++++||+||+|. . ..
T Consensus 663 ~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~----~~v~~~~L~lLVIDEahr-f-G~ 736 (1147)
T PRK10689 663 QQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ----SDVKWKDLGLLIVDEEHR-F-GV 736 (1147)
T ss_pred HHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh----CCCCHhhCCEEEEechhh-c-ch
Confidence 6655544433222233333333322111111 1124578889997432 233478999999999995 2 22
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCcccHHH--HHhh-hcCCCeeeeCC-CccceeeeeccCCcccHHHHHHHHHHHHhhc
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLEAEK--FQGY-FYGAPLMKVPG-RLHPVEIFYTQEPERDYLEAAIRTVVQIHMC 276 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~~~~--~~~~-f~~~p~i~v~g-~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~ 276 (727)
. ... .+....++.++++||||..... ++.. +.+..++..+. ...+++.++...... .. ...+..-.
T Consensus 737 ~-~~e---~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~-~~---k~~il~el-- 806 (1147)
T PRK10689 737 R-HKE---RIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSL-VV---REAILREI-- 806 (1147)
T ss_pred h-HHH---HHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcH-HH---HHHHHHHH--
Confidence 1 122 2223345889999999975433 3333 23333444332 224565555432111 11 11122111
Q ss_pred CCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccc
Q 004850 277 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAE 356 (727)
Q Consensus 277 ~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe 356 (727)
...|.++||+|+.+.++.+++.|.+.. +++.+..+||+|++.+|.+++..|++| +.+|||||||+|
T Consensus 807 ~r~gqv~vf~n~i~~ie~la~~L~~~~-------p~~~v~~lHG~m~q~eRe~im~~Fr~G-------k~~VLVaTdIie 872 (1147)
T PRK10689 807 LRGGQVYYLYNDVENIQKAAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQ-------RFNVLVCTTIIE 872 (1147)
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHHhC-------CCCcEEEEeCCCCHHHHHHHHHHHHhc-------CCCEEEECchhh
Confidence 135789999999999999999998753 467899999999999999999999999 899999999999
Q ss_pred cCcccCCeEEEE-----cCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecch
Q 004850 357 TSLTIDGIVYVI-----DPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTE 418 (727)
Q Consensus 357 ~gitIp~V~~VI-----d~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~ 418 (727)
+|||||+|++|| ++|+ ++|.||+|||||. +.|.||.++..
T Consensus 873 rGIDIP~v~~VIi~~ad~fgl----------------------aq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 873 TGIDIPTANTIIIERADHFGL----------------------AQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred cccccccCCEEEEecCCCCCH----------------------HHHHHHhhccCCCCCceEEEEEeCC
Confidence 999999999999 5554 4699999999999 88999998864
No 61
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.96 E-value=1e-27 Score=280.89 Aligned_cols=302 Identities=16% Similarity=0.222 Sum_probs=208.5
Q ss_pred CCchHHHHHHHHhhhcC------CEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHH
Q 004850 65 LPVWQQKEEFLQVLKAN------QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (727)
Q Consensus 65 lp~~~~q~~ii~~i~~g------~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (727)
..+++.|.++++.|..+ .+++++|+||||||..+..+++.... . +.+.++++||+.++.|.....+.+..
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-~---g~q~lilaPT~~LA~Q~~~~l~~l~~ 335 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-A---GYQAALMAPTEILAEQHYENLKKLLE 335 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-c---CCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 36899999999999887 37899999999999988877765431 1 13456677777777777666666666
Q ss_pred hccccccceeceeeee------ccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHH
Q 004850 139 EMDVTIGEEVGYSIRF------EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLK 212 (727)
Q Consensus 139 ~~~~~~~~~vg~~~~~------~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~ 212 (727)
..+.+++...|..... .........|.++|++.++. ...+.+++++|+||+|. ..... . ..+..
T Consensus 336 ~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hr--fg~~q-r---~~l~~ 405 (681)
T PRK10917 336 PLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQHR--FGVEQ-R---LALRE 405 (681)
T ss_pred hcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechhh--hhHHH-H---HHHHh
Confidence 6666665555543211 11122346788899987643 22478999999999995 22221 1 12222
Q ss_pred hCCCCEEEEEcCcccHHHHH-hhhcCCCeeee---CCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCC
Q 004850 213 NRPDLKLVVMSATLEAEKFQ-GYFYGAPLMKV---PGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTG 288 (727)
Q Consensus 213 ~~~~~~vil~SATl~~~~~~-~~f~~~p~i~v---~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~ 288 (727)
.....++++||||.....++ ..++...+..+ +....|+...+......+ .++..+.... ....+++||+|.
T Consensus 406 ~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~---~~~~~i~~~~--~~g~q~~v~~~~ 480 (681)
T PRK10917 406 KGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRRD---EVYERIREEI--AKGRQAYVVCPL 480 (681)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccHH---HHHHHHHHHH--HcCCcEEEEEcc
Confidence 23357899999998654443 22333222222 222346777666544332 2333333332 245689999996
Q ss_pred HH--------HHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcc
Q 004850 289 EE--------EIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLT 360 (727)
Q Consensus 289 ~~--------ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~git 360 (727)
.+ .++.+++.|...+ +++.+..+||+|++.+|.++++.|++| ..+|||||+++|+|||
T Consensus 481 ie~s~~l~~~~~~~~~~~L~~~~-------~~~~v~~lHG~m~~~eR~~i~~~F~~g-------~~~ILVaT~vie~GiD 546 (681)
T PRK10917 481 IEESEKLDLQSAEETYEELQEAF-------PELRVGLLHGRMKPAEKDAVMAAFKAG-------EIDILVATTVIEVGVD 546 (681)
T ss_pred cccccchhHHHHHHHHHHHHHHC-------CCCcEEEEeCCCCHHHHHHHHHHHHcC-------CCCEEEECcceeeCcc
Confidence 44 3455566665532 347899999999999999999999999 8899999999999999
Q ss_pred cCCeEEEEcCCCccceeeccccCccccccccc-cHhhHHhhhcccCCC-CCceEEEecc
Q 004850 361 IDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI-SKASAHQRSGRAGRT-QPGKCFRLYT 417 (727)
Q Consensus 361 Ip~V~~VId~g~~k~~~~~~~~~~~~l~~~pi-s~~~~~qR~GRaGR~-~~G~~~~L~t 417 (727)
||++++||+++. |- +.+++.||+|||||. .+|.||.+++
T Consensus 547 ip~v~~VIi~~~------------------~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 547 VPNATVMVIENA------------------ERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred cCCCcEEEEeCC------------------CCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 999999999876 32 357788999999999 7899999996
No 62
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.95 E-value=1.1e-27 Score=278.86 Aligned_cols=316 Identities=16% Similarity=0.199 Sum_probs=208.0
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhhhcC------CEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchh
Q 004850 54 RYYEILEKRKSLPVWQQKEEFLQVLKAN------QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRV 127 (727)
Q Consensus 54 ~~~~~l~~~~~lp~~~~q~~ii~~i~~g------~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~ 127 (727)
.+.+.++..++ .+++.|+++++.|..+ .+.+++|+||||||..+..+++.... ...+.++++||..++.
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~----~g~qvlilaPT~~LA~ 298 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE----AGYQVALMAPTEILAE 298 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH----cCCcEEEECCHHHHHH
Confidence 34455666666 6789999999999876 25789999999999988776665431 1123566677776666
Q ss_pred hhccHHHHHHHhccccccceeceeeee------ccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHH
Q 004850 128 AAMSVSRRVAEEMDVTIGEEVGYSIRF------EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATD 201 (727)
Q Consensus 128 ~~~~v~~~v~~~~~~~~~~~vg~~~~~------~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d 201 (727)
|....++.+....+.++....|..... .........|.+.|++.+.. ...+.+++++|+||+|. ....
T Consensus 299 Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~--fg~~ 372 (630)
T TIGR00643 299 QHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHR--FGVE 372 (630)
T ss_pred HHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechhh--ccHH
Confidence 665555555555455555444432111 11112345788899987653 23478999999999995 2222
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCcccHHHHHh-hhcCCC--ee-eeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcC
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLEAEKFQG-YFYGAP--LM-KVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCE 277 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~~~~~~~-~f~~~p--~i-~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~ 277 (727)
.. ..+..........++++||||.....++. .++... .+ ..+....|+..++...... ..++..+.... .
T Consensus 373 qr-~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~~l--~ 446 (630)
T TIGR00643 373 QR-KKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDEK---DIVYEFIEEEI--A 446 (630)
T ss_pred HH-HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcchH---HHHHHHHHHHH--H
Confidence 11 11111111111568999999975544332 122211 11 1232235677666554322 22333333222 2
Q ss_pred CCCCEEEecCCHH--------HHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEE
Q 004850 278 PSGDILVFLTGEE--------EIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 349 (727)
Q Consensus 278 ~~g~iLVFl~~~~--------ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvl 349 (727)
....++||+|..+ .++.+++.|.... +++.+..+||+|++++|..+++.|++| ..+||
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~-------~~~~v~~lHG~m~~~eR~~i~~~F~~g-------~~~IL 512 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF-------PKYNVGLLHGRMKSDEKEAVMEEFREG-------EVDIL 512 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhC-------CCCcEEEEeCCCCHHHHHHHHHHHHcC-------CCCEE
Confidence 3568999999764 3455566665432 468899999999999999999999999 89999
Q ss_pred EecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecc
Q 004850 350 VSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYT 417 (727)
Q Consensus 350 vaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t 417 (727)
|||+++|+|||+|++++||.++.. +.+.+++.||+|||||. .+|.||.++.
T Consensus 513 VaT~vie~GvDiP~v~~VIi~~~~-----------------r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 513 VATTVIEVGVDVPNATVMVIEDAE-----------------RFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred EECceeecCcccCCCcEEEEeCCC-----------------cCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 999999999999999999987762 12467889999999999 7999999983
No 63
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.95 E-value=3.7e-27 Score=251.84 Aligned_cols=439 Identities=18% Similarity=0.194 Sum_probs=297.8
Q ss_pred CCCCCCCChHHHHHHHHhcCCCchHHHHHHHHh-hhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcc
Q 004850 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV-LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (727)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~-i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (727)
+.+++.+++.++.+++.+|+..+.++|.-.+++ +.+|++..++.+|+||||..--..=+... +.. +..+++..
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~-l~~-----g~KmlfLv 268 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRL-LSG-----GKKMLFLV 268 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHH-HhC-----CCeEEEEe
Confidence 578899999999999999999999999998888 88999999999999999974321111111 110 12245555
Q ss_pred cchhhhccHHHHHHH---hccccccceeceeeeec------cccccCccccccChHHHHHHHhccccccCCeeEEeeccC
Q 004850 124 PRRVAAMSVSRRVAE---EMDVTIGEEVGYSIRFE------DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAH 194 (727)
Q Consensus 124 p~~~~~~~v~~~v~~---~~~~~~~~~vg~~~~~~------~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEah 194 (727)
|+...+-+-.+.+.+ .++..+.-.||....-. .....+..|.+.|..-.-.++.+...+.++..+|+||+|
T Consensus 269 PLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiH 348 (830)
T COG1202 269 PLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIH 348 (830)
T ss_pred hhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeee
Confidence 665544444444433 34455555566432111 123356778888876665566666779999999999998
Q ss_pred cChhhHH----HHHHHHHHHHHhCCCCEEEEEcCcc-cHHHHHhhhcCCCeeeeCCCccceeeeeccCC-cccHHHHHHH
Q 004850 195 ERTLATD----VLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEP-ERDYLEAAIR 268 (727)
Q Consensus 195 er~~~~d----~ll~ll~~l~~~~~~~~vil~SATl-~~~~~~~~f~~~p~i~v~g~~~~v~~~y~~~~-~~~~~~~~~~ 268 (727)
- ++.+ -+-+++.++....|+.|.|.+|||+ |++.++.+++ +..+..++|.-|++-|..... ..++......
T Consensus 349 t--L~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~-a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~ 425 (830)
T COG1202 349 T--LEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLG-AKLVLYDERPVPLERHLVFARNESEKWDIIAR 425 (830)
T ss_pred e--ccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhC-CeeEeecCCCCChhHeeeeecCchHHHHHHHH
Confidence 3 3332 2566666666668899999999999 8899999985 566667888888876665544 2333222111
Q ss_pred HHHH----HhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCC
Q 004850 269 TVVQ----IHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPP 344 (727)
Q Consensus 269 ~l~~----i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~ 344 (727)
.+.. .....-.|+.|||.+++..|+.++..|..+ ++++.|+|++|+..+|..+-..|..+
T Consensus 426 L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k---------G~~a~pYHaGL~y~eRk~vE~~F~~q------- 489 (830)
T COG1202 426 LVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK---------GLKAAPYHAGLPYKERKSVERAFAAQ------- 489 (830)
T ss_pred HHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC---------CcccccccCCCcHHHHHHHHHHHhcC-------
Confidence 1111 111223789999999999999999999764 79999999999999999999999998
Q ss_pred CcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC---CCceEEEecch-hh
Q 004850 345 GRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRLYTE-KS 420 (727)
Q Consensus 345 ~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~---~~G~~~~L~t~-~~ 420 (727)
...++|+|-..+.|+|+|.-..|.++=. .| ..|.|..++.|+.|||||. ..|++|.|... ..
T Consensus 490 ~l~~VVTTAAL~AGVDFPASQVIFEsLa---------MG-----~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~ 555 (830)
T COG1202 490 ELAAVVTTAALAAGVDFPASQVIFESLA---------MG-----IEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKK 555 (830)
T ss_pred CcceEeehhhhhcCCCCchHHHHHHHHH---------cc-----cccCCHHHHHHHhcccCCCCcccCceEEEEecCChh
Confidence 8899999999999999997655554321 12 2399999999999999999 46999999754 33
Q ss_pred hcccCCCCC----------CCcccc-----cCchhhHHHHHHcCCCCccc-ccCCCC-C--cHHHHHHHHHHHHHcCCcC
Q 004850 421 FNNDLQPQT----------YPEILR-----SNLANTVLTLKKLGIDDLVH-FDFMDP-P--APETLMRALEVLNYLGALD 481 (727)
Q Consensus 421 ~~~~l~~~~----------~pei~r-----~~l~~~~L~lk~~~~~~~~~-~~~~~~-P--~~~~i~~a~~~L~~lgald 481 (727)
|...|.+.. .||-.- .+-.+-+|. ..|+.+-.+ .+-+.+ + ..-..+.++..|..+|.++
T Consensus 556 Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~i~~v~~~~~g~~~~~~k~l~~Lee~g~i~ 633 (830)
T COG1202 556 YHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSVIERVNSLMLGAAFDPKKALSKLEEYGMIK 633 (830)
T ss_pred hcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHHHhhcChhhccccCCHHHHHHHHHhcCCee
Confidence 433333221 122111 111111222 223221110 000000 0 0112467899999999999
Q ss_pred CCC---CcchhhhhhccCCCChhhhhHHhhcCCCCChHHHHHHHHHhc
Q 004850 482 DDG---NLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLS 526 (727)
Q Consensus 482 ~~~---~lT~lG~~l~~lPl~p~~~k~ll~~~~~~c~~~~l~i~a~ls 526 (727)
.+| ++|+.|+.++.--+.|.-|..|..++ ..--+| +.|++.|.
T Consensus 634 ~~G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v-~~~~~p-l~i~~~l~ 679 (830)
T COG1202 634 KKGNIVRPTPYGRAVAMSFLGPSEAEFIREGV-LASMDP-LRIAAELE 679 (830)
T ss_pred ccCCEeeeccccceeEEeecCchHHHHHHHhh-hccCCh-HhHhhccc
Confidence 887 58999999999999999999998875 222334 44555544
No 64
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=266.25 Aligned_cols=388 Identities=17% Similarity=0.177 Sum_probs=272.0
Q ss_pred CChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCC-CccccCceEEEEcccchhhh
Q 004850 51 YSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIE-TPDRRRKMMIACTQPRRVAA 129 (727)
Q Consensus 51 l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~-~~~~~~~~~i~~t~p~~~~~ 129 (727)
+++.+.+.+..+ +..+++.|.++++.|.+|+++.|++|||||||.+.-.++++..--. ......++..+...|++..+
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 578999999888 8999999999999999999999999999999998888877664111 11222346666777888877
Q ss_pred ccHHHHH---HHhccccccceeceeeeeccccc--cCccccccChHHHHHHHhccc---cccCCeeEEeeccCcChhh-H
Q 004850 130 MSVSRRV---AEEMDVTIGEEVGYSIRFEDCSS--ARTVLKYLTDGMLLREAMTDP---LLERYKVIVLDEAHERTLA-T 200 (727)
Q Consensus 130 ~~v~~~v---~~~~~~~~~~~vg~~~~~~~~~~--~~~~i~~lT~G~l~r~~~~~~---ll~~~~~lIlDEaher~~~-~ 200 (727)
..+..++ ...+|..+.-.-|.....+.... .-..|...||+.+.-.+.... .+.++.++|+||.|+-..+ .
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 7777776 44566666444444433333222 235677899999998887643 4999999999999973222 1
Q ss_pred HH-HHHHHHHHHHhCCCCEEEEEcCcc-cHHHHHhhhcCC----CeeeeCC-CccceeeeeccCCcc---cHHHHHHHHH
Q 004850 201 DV-LFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGA----PLMKVPG-RLHPVEIFYTQEPER---DYLEAAIRTV 270 (727)
Q Consensus 201 d~-ll~ll~~l~~~~~~~~vil~SATl-~~~~~~~~f~~~----p~i~v~g-~~~~v~~~y~~~~~~---~~~~~~~~~l 270 (727)
+. +--.+.++...-++.|-|..|||. +.+..++|+.+. .++.+.+ +...+++........ .....+...+
T Consensus 167 G~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i 246 (814)
T COG1201 167 GVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERI 246 (814)
T ss_pred chhhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHH
Confidence 12 222333333333479999999999 678888888654 3455544 333455544333211 1123345555
Q ss_pred HHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEE
Q 004850 271 VQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVV 350 (727)
Q Consensus 271 ~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlv 350 (727)
.++.++ ...+|||+||+...+.++..|.+.. ...+...||+++.++|..+-+.+++| ..|++|
T Consensus 247 ~~~v~~--~~ttLIF~NTR~~aE~l~~~L~~~~--------~~~i~~HHgSlSre~R~~vE~~lk~G-------~lravV 309 (814)
T COG1201 247 AELVKK--HRTTLIFTNTRSGAERLAFRLKKLG--------PDIIEVHHGSLSRELRLEVEERLKEG-------ELKAVV 309 (814)
T ss_pred HHHHhh--cCcEEEEEeChHHHHHHHHHHHHhc--------CCceeeecccccHHHHHHHHHHHhcC-------CceEEE
Confidence 555543 3489999999999999999998862 36789999999999999999999999 899999
Q ss_pred ecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC----CCceEEEecchhhhccc--
Q 004850 351 STNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT----QPGKCFRLYTEKSFNND-- 424 (727)
Q Consensus 351 aTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~----~~G~~~~L~t~~~~~~~-- 424 (727)
||.-.|-||||.+|+.||+++= |-|.+...||+||+|+- ..|..|...- .+.-.+
T Consensus 310 ~TSSLELGIDiG~vdlVIq~~S------------------P~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r-~dllE~~v 370 (814)
T COG1201 310 ATSSLELGIDIGDIDLVIQLGS------------------PKSVNRFLQRIGRAGHRLGEVSKGIIIAEDR-DDLLECLV 370 (814)
T ss_pred EccchhhccccCCceEEEEeCC------------------cHHHHHHhHhccccccccCCcccEEEEecCH-HHHHHHHH
Confidence 9999999999999999999998 99999999999999976 3466666542 222111
Q ss_pred ------CCCCCCCcccccCchhhHHHHHHcCCCCcc-----------cccCCCCCcHHHHHHHHHHHHH
Q 004850 425 ------LQPQTYPEILRSNLANTVLTLKKLGIDDLV-----------HFDFMDPPAPETLMRALEVLNY 476 (727)
Q Consensus 425 ------l~~~~~pei~r~~l~~~~L~lk~~~~~~~~-----------~~~~~~~P~~~~i~~a~~~L~~ 476 (727)
-.....++|-..+|+-++=++-++-+.... .++|-+ -+.+.+.+.++.|..
T Consensus 371 i~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~~~~~~~~y~~vrraypy~~-L~~e~f~~v~~~l~~ 438 (814)
T COG1201 371 LADLALEGKLERIKIPKNPLDVLAQQIVGMALEKVWEVEEAYRVVRRAYPYAD-LSREDFRLVLRYLAG 438 (814)
T ss_pred HHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhCcCCHHHHHHHHHhcccccc-CCHHHHHHHHHHHhh
Confidence 123335667777777665555544332211 123333 245667888888877
No 65
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.95 E-value=9.2e-27 Score=254.68 Aligned_cols=292 Identities=17% Similarity=0.221 Sum_probs=181.3
Q ss_pred EEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceee------e---
Q 004850 83 VIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSI------R--- 153 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~------~--- 153 (727)
+++|.||||||||+++..+++.... ... ...+++..|.+..+.+.++++...++..++...|... .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~--~~~---~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~ 75 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIK--SQK---ADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDS 75 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHh--hCC---CCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCc
Confidence 4789999999999999988875431 111 1134555677777777777776654433221111000 0
Q ss_pred --eccc---------cccCccccccChHHHHHHHhccc-------cccCCeeEEeeccCcChhh-HHHHHHHHHHHHHhC
Q 004850 154 --FEDC---------SSARTVLKYLTDGMLLREAMTDP-------LLERYKVIVLDEAHERTLA-TDVLFGLLKEVLKNR 214 (727)
Q Consensus 154 --~~~~---------~~~~~~i~~lT~G~l~r~~~~~~-------ll~~~~~lIlDEaher~~~-~d~ll~ll~~l~~~~ 214 (727)
.+.. ......+.++|++++...+.... .....+++|+||+|.-... .+.+..+++.+. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~--~ 153 (358)
T TIGR01587 76 EEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK--D 153 (358)
T ss_pred hhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--H
Confidence 0000 01234678899999987766511 1223489999999963322 233555555443 2
Q ss_pred CCCEEEEEcCcccHHHHHhhhcCCCeeeeCCC--ccc---e-eeeec--cCCcccHHHHHHHHHHHHhhcCCCCCEEEec
Q 004850 215 PDLKLVVMSATLEAEKFQGYFYGAPLMKVPGR--LHP---V-EIFYT--QEPERDYLEAAIRTVVQIHMCEPSGDILVFL 286 (727)
Q Consensus 215 ~~~~vil~SATl~~~~~~~~f~~~p~i~v~g~--~~~---v-~~~y~--~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl 286 (727)
.+.++++||||++ +.+.+++........+.. ..+ . .+.+. .......... +..+.+.. ..++++|||+
T Consensus 154 ~~~~~i~~SATlp-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~~--~~~~~~lVf~ 229 (358)
T TIGR01587 154 NDVPILLMSATLP-KFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISS-LERLLEFI--KKGGKIAIIV 229 (358)
T ss_pred cCCCEEEEecCch-HHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHH-HHHHHHHh--hCCCeEEEEE
Confidence 3789999999997 334444432211111100 000 1 11111 1111112222 22222222 3467999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhh----hcCCCCCCCCCCCCCCcEEEEecCccccCcccC
Q 004850 287 TGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQK----IFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID 362 (727)
Q Consensus 287 ~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~----~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp 362 (727)
++.++++.+++.|.+.. ....+..+||++++.+|.+ +++.|+++ ..+||||||++|+||||+
T Consensus 230 ~t~~~~~~~~~~L~~~~-------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~-------~~~ilvaT~~~~~GiDi~ 295 (358)
T TIGR01587 230 NTVDRAQEFYQQLKENA-------PEEEIMLLHSRFTEKDRAKKEAELLEEMKKN-------EKFVIVATQVIEASLDIS 295 (358)
T ss_pred CCHHHHHHHHHHHHhhc-------CCCeEEEEECCCCHHHHHHHHHHHHHHhcCC-------CCeEEEECcchhceeccC
Confidence 99999999999998752 2357999999999999976 48889988 789999999999999996
Q ss_pred CeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCC--C---ceEEEecchhh
Q 004850 363 GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ--P---GKCFRLYTEKS 420 (727)
Q Consensus 363 ~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~--~---G~~~~L~t~~~ 420 (727)
+++||++.. | .++|+||+||+||.+ . |.+|-++...+
T Consensus 296 -~~~vi~~~~------------------~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 296 -ADVMITELA------------------P--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred -CCEEEEcCC------------------C--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 778887544 3 678999999999982 2 37777776544
No 66
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.94 E-value=1.3e-26 Score=282.14 Aligned_cols=298 Identities=18% Similarity=0.192 Sum_probs=188.6
Q ss_pred EEcCCCChhhchhhHHHhcCccCCCc-------cccCceEEEEcccchhhhccHHHHHHHh---------------cccc
Q 004850 86 LVGETGSGKTTQIPQFVLEGVDIETP-------DRRRKMMIACTQPRRVAAMSVSRRVAEE---------------MDVT 143 (727)
Q Consensus 86 i~g~TGSGKTt~~~~~ll~~~~~~~~-------~~~~~~~i~~t~p~~~~~~~v~~~v~~~---------------~~~~ 143 (727)
|++|||||||.++-.++++.. +... ....++.+++..|++..+.++.+++... .+..
T Consensus 1 V~APTGSGKTLAA~LpaL~~L-l~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~ 79 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRL-FREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLR 79 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHH-HhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceE
Confidence 579999999999988776654 2110 0011223333345554455555544221 1223
Q ss_pred ccceeceeeeeccc--cccCccccccChHHHHHHHhcc--ccccCCeeEEeeccCcChhhHH---HHHHHHHHHHHhC-C
Q 004850 144 IGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTD--PLLERYKVIVLDEAHERTLATD---VLFGLLKEVLKNR-P 215 (727)
Q Consensus 144 ~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~--~ll~~~~~lIlDEaher~~~~d---~ll~ll~~l~~~~-~ 215 (727)
++...|.....+.. ......|.+.||+.+..++..+ ..++++++||+||+|+ ..+.+ .+...+.++.... .
T Consensus 80 V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~-L~g~kRG~~Lel~LeRL~~l~~~ 158 (1490)
T PRK09751 80 VGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHA-VAGSKRGAHLALSLERLDALLHT 158 (1490)
T ss_pred EEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHH-hcccccccHHHHHHHHHHHhCCC
Confidence 33333322211111 1124578899999998776543 3599999999999995 33332 1233333433322 3
Q ss_pred CCEEEEEcCcc-cHHHHHhhhcCC-CeeeeC-C--CccceeeeeccCCcccH----------------HH----HHHHHH
Q 004850 216 DLKLVVMSATL-EAEKFQGYFYGA-PLMKVP-G--RLHPVEIFYTQEPERDY----------------LE----AAIRTV 270 (727)
Q Consensus 216 ~~~vil~SATl-~~~~~~~~f~~~-p~i~v~-g--~~~~v~~~y~~~~~~~~----------------~~----~~~~~l 270 (727)
+.|+|.+|||+ +.+.+++|+.+. |+..+. . +..++++++. ...... .. .....+
T Consensus 159 ~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp-~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 159 SAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVP-VANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred CCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEe-cCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 68999999999 568888988653 433222 1 2233433221 111000 00 011112
Q ss_pred HHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhc-----------------CC-------CCCCeEEEEecCCCCHHH
Q 004850 271 VQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNM-----------------GD-------QVGPVKVVPLYSTLPPAM 326 (727)
Q Consensus 271 ~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~-----------------~~-------~~~~~~v~~lh~~l~~~~ 326 (727)
+... ....++|||+||+..++.++..|++..... .. ....+.+..+||+|++++
T Consensus 238 l~~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkee 315 (1490)
T PRK09751 238 LDEV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQ 315 (1490)
T ss_pred HHHH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHH
Confidence 2221 235689999999999999999997643110 00 001234678999999999
Q ss_pred HhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCC
Q 004850 327 QQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGR 406 (727)
Q Consensus 327 r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR 406 (727)
|..+.+.|++| ..+|||||+.+|+||||++|++||++|. |.|.++|+||+|||||
T Consensus 316 R~~IE~~fK~G-------~LrvLVATssLELGIDIg~VDlVIq~gs------------------P~sVas~LQRiGRAGR 370 (1490)
T PRK09751 316 RAITEQALKSG-------ELRCVVATSSLELGIDMGAVDLVIQVAT------------------PLSVASGLQRIGRAGH 370 (1490)
T ss_pred HHHHHHHHHhC-------CceEEEeCcHHHccCCcccCCEEEEeCC------------------CCCHHHHHHHhCCCCC
Confidence 99999999999 8999999999999999999999999998 9999999999999999
Q ss_pred CCC--ceEE
Q 004850 407 TQP--GKCF 413 (727)
Q Consensus 407 ~~~--G~~~ 413 (727)
... +.++
T Consensus 371 ~~gg~s~gl 379 (1490)
T PRK09751 371 QVGGVSKGL 379 (1490)
T ss_pred CCCCccEEE
Confidence 833 3444
No 67
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.94 E-value=1.3e-25 Score=244.39 Aligned_cols=288 Identities=15% Similarity=0.190 Sum_probs=176.5
Q ss_pred HHHHHHHhhhcCC--EEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhc----ccc
Q 004850 70 QKEEFLQVLKANQ--VIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM----DVT 143 (727)
Q Consensus 70 ~q~~ii~~i~~g~--~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~----~~~ 143 (727)
+|.+.++++.+++ ++++.+|||||||.++..+++... ...+.++|++.+..+.....+.+...+ +..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~-------~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGE-------NDTIALYPTNALIEDQTEAIKEFVDVFKPERDVN 73 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcC-------CCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 5889999998887 478899999999999887777532 124556666555444333333333222 111
Q ss_pred ccceeceeee----ec----cc-------------cccCccccccChHHHHHHHhcc----c------cccCCeeEEeec
Q 004850 144 IGEEVGYSIR----FE----DC-------------SSARTVLKYLTDGMLLREAMTD----P------LLERYKVIVLDE 192 (727)
Q Consensus 144 ~~~~vg~~~~----~~----~~-------------~~~~~~i~~lT~G~l~r~~~~~----~------ll~~~~~lIlDE 192 (727)
+....|.... .. .. ....+....+|+...+..++.. . .+.++++||+||
T Consensus 74 v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE 153 (357)
T TIGR03158 74 LLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDE 153 (357)
T ss_pred EEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEec
Confidence 1111121000 00 00 0012334455554444443321 1 268999999999
Q ss_pred cCcChhhHH-HH---HHHHHHHHHhCCCCEEEEEcCcccHHH---HHhh-hcCCCeeeeCCC--cc--------------
Q 004850 193 AHERTLATD-VL---FGLLKEVLKNRPDLKLVVMSATLEAEK---FQGY-FYGAPLMKVPGR--LH-------------- 248 (727)
Q Consensus 193 aher~~~~d-~l---l~ll~~l~~~~~~~~vil~SATl~~~~---~~~~-f~~~p~i~v~g~--~~-------------- 248 (727)
+|....... .+ +.....+.....+.+++++|||++... +.+. +.+.|++.++|+ .+
T Consensus 154 ~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~ 233 (357)
T TIGR03158 154 FHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQS 233 (357)
T ss_pred ccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccc
Confidence 997543222 11 233332222223579999999997542 2232 235677777776 11
Q ss_pred ------ceeeeeccCCc--ccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecC
Q 004850 249 ------PVEIFYTQEPE--RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYS 320 (727)
Q Consensus 249 ------~v~~~y~~~~~--~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~ 320 (727)
++++.+...+. .+.+....+.+.+.....+.+++|||++++++++.+++.|++.. .++.+..+||
T Consensus 234 ~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~-------~~~~~~~l~g 306 (357)
T TIGR03158 234 FRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQG-------LGDDIGRITG 306 (357)
T ss_pred cceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhC-------CCceEEeeec
Confidence 35555544221 11222233334333333456789999999999999999998631 1467889999
Q ss_pred CCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhh
Q 004850 321 TLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQR 400 (727)
Q Consensus 321 ~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR 400 (727)
.+++.+|.++. ...|+||||++|||||||++..|++ |.+.++|+||
T Consensus 307 ~~~~~~R~~~~-------------~~~iLVaTdv~~rGiDi~~~~vi~~---------------------p~~~~~yiqR 352 (357)
T TIGR03158 307 FAPKKDRERAM-------------QFDILLGTSTVDVGVDFKRDWLIFS---------------------ARDAAAFWQR 352 (357)
T ss_pred CCCHHHHHHhc-------------cCCEEEEecHHhcccCCCCceEEEC---------------------CCCHHHHhhh
Confidence 99999987653 3479999999999999999844433 6788999999
Q ss_pred hcccC
Q 004850 401 SGRAG 405 (727)
Q Consensus 401 ~GRaG 405 (727)
+||||
T Consensus 353 ~GR~g 357 (357)
T TIGR03158 353 LGRLG 357 (357)
T ss_pred cccCC
Confidence 99998
No 68
>PRK09401 reverse gyrase; Reviewed
Probab=99.93 E-value=4.8e-26 Score=276.51 Aligned_cols=302 Identities=15% Similarity=0.107 Sum_probs=196.6
Q ss_pred HHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHH
Q 004850 58 ILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVA 137 (727)
Q Consensus 58 ~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (727)
.++...-..++++|...++.+..|++++++||||||||+.+. ++.... . ....+.++++||+++..|+....+.++
T Consensus 72 ~f~~~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l-~~~~~l--~-~~g~~alIL~PTreLa~Qi~~~l~~l~ 147 (1176)
T PRK09401 72 FFKKKTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGL-VMSLYL--A-KKGKKSYIIFPTRLLVEQVVEKLEKFG 147 (1176)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHH-HHHHHH--H-hcCCeEEEEeccHHHHHHHHHHHHHHh
Confidence 343442347899999999999999999999999999997433 222111 0 112346778899998888888887777
Q ss_pred Hhccccccceeceeee----ec----cccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhh----------
Q 004850 138 EEMDVTIGEEVGYSIR----FE----DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLA---------- 199 (727)
Q Consensus 138 ~~~~~~~~~~vg~~~~----~~----~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~---------- 199 (727)
...+..+...+|.... .+ ........|.++|+|++.+.+. .-...++++||+||||. ++.
T Consensus 148 ~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD~-~L~~~k~id~~l~ 225 (1176)
T PRK09401 148 EKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVDA-VLKSSKNIDKLLY 225 (1176)
T ss_pred hhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChHH-hhhcccchhhHHH
Confidence 7665544434433210 00 0112346889999999988764 22245699999999994 442
Q ss_pred -HHHHHHHHHHHHHh-------------------------CCCCEEEEEcCcccHHHHH-hhhcCCCeeeeCC---Cccc
Q 004850 200 -TDVLFGLLKEVLKN-------------------------RPDLKLVVMSATLEAEKFQ-GYFYGAPLMKVPG---RLHP 249 (727)
Q Consensus 200 -~d~ll~ll~~l~~~-------------------------~~~~~vil~SATl~~~~~~-~~f~~~p~i~v~g---~~~~ 249 (727)
.+|..+.+..+... ..+.+++++|||++..... ..|...-.+.+.. ....
T Consensus 226 ~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rn 305 (1176)
T PRK09401 226 LLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRN 305 (1176)
T ss_pred hCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCcccccCC
Confidence 11211111111110 1157899999999753221 2222211122222 1235
Q ss_pred eeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHH---HHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHH
Q 004850 250 VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEE---IEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAM 326 (727)
Q Consensus 250 v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~e---i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 326 (727)
+.+.|...+ ++.+.+...+ ... .+.+|||++++.. ++.+++.|+.. ++.+..+||+|
T Consensus 306 I~~~yi~~~--~k~~~L~~ll----~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~---------gi~v~~~hg~l---- 365 (1176)
T PRK09401 306 IVDSYIVDE--DSVEKLVELV----KRL-GDGGLIFVPSDKGKEYAEELAEYLEDL---------GINAELAISGF---- 365 (1176)
T ss_pred ceEEEEEcc--cHHHHHHHHH----Hhc-CCCEEEEEecccChHHHHHHHHHHHHC---------CCcEEEEeCcH----
Confidence 667776544 3433333222 222 2469999999777 99999999874 79999999999
Q ss_pred HhhhcCCCCCCCCCCCCCCcEEEEe----cCccccCcccCC-eEEEEcCCCccceeeccccCccccccccccHhhHHhhh
Q 004850 327 QQKIFEPAPPPSKEGGPPGRKIVVS----TNIAETSLTIDG-IVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRS 401 (727)
Q Consensus 327 r~~~~~~~~~g~~~~~~~~~kvlva----TniAe~gitIp~-V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~ 401 (727)
.+.++.|++| ..+|||| ||+|+||||||+ |+|||++|+++.+.- --....+.||.
T Consensus 366 -~~~l~~F~~G-------~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~------------~~~~~~~~~~~ 425 (1176)
T PRK09401 366 -ERKFEKFEEG-------EVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFS------------LEEELAPPFLL 425 (1176)
T ss_pred -HHHHHHHHCC-------CCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEe------------ccccccCHHHH
Confidence 2345999999 8899999 799999999999 899999999654431 11456788999
Q ss_pred cccC
Q 004850 402 GRAG 405 (727)
Q Consensus 402 GRaG 405 (727)
||+-
T Consensus 426 ~r~~ 429 (1176)
T PRK09401 426 LRLL 429 (1176)
T ss_pred HHHH
Confidence 9883
No 69
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.93 E-value=4.9e-24 Score=248.56 Aligned_cols=520 Identities=20% Similarity=0.235 Sum_probs=313.2
Q ss_pred CCCChHHHHHHHHhcCCCchHHHHHHHHh-hhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchh
Q 004850 49 KPYSQRYYEILEKRKSLPVWQQKEEFLQV-LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRV 127 (727)
Q Consensus 49 ~~l~~~~~~~l~~~~~lp~~~~q~~ii~~-i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~ 127 (727)
..+.+.+.++++..++-..++.|++.+.. +.+|++++|++|||||||......+++... .. +..++..-|++.
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~-~~-----~~k~vYivPlkA 87 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLL-EG-----GGKVVYIVPLKA 87 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHH-hc-----CCcEEEEeChHH
Confidence 44677788888877776666666666655 556699999999999999988877766541 11 112455567777
Q ss_pred hhccHHHHHH--HhccccccceeceeeeeccccccCccccccChHHHHHHHhccc-cccCCeeEEeeccCcChhh-HH-H
Q 004850 128 AAMSVSRRVA--EEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLA-TD-V 202 (727)
Q Consensus 128 ~~~~v~~~v~--~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~-ll~~~~~lIlDEaher~~~-~d-~ 202 (727)
.+.+.++.+. +..|.+++...|... .......++.|.++|+..+--.....+ .+.++++||+||+|.-.-. .+ .
T Consensus 88 La~Ek~~~~~~~~~~GirV~~~TgD~~-~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~ 166 (766)
T COG1204 88 LAEEKYEEFSRLEELGIRVGISTGDYD-LDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPV 166 (766)
T ss_pred HHHHHHHHhhhHHhcCCEEEEecCCcc-cchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCce
Confidence 7777777776 556666666555321 111123467788888876654444443 4889999999999962222 22 2
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCcc-cHHHHHhhhcCCCeeeeCCCc--------cceeeeeccCCc----ccHHHHHHHH
Q 004850 203 LFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRL--------HPVEIFYTQEPE----RDYLEAAIRT 269 (727)
Q Consensus 203 ll~ll~~l~~~~~~~~vil~SATl-~~~~~~~~f~~~p~i~v~g~~--------~~v~~~y~~~~~----~~~~~~~~~~ 269 (727)
+..++.+.....+..+++-+|||+ +...+++|++..++ ....+. +....++..... ...-..+...
T Consensus 167 lE~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~ 245 (766)
T COG1204 167 LESIVARMRRLNELIRIVGLSATLPNAEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALEL 245 (766)
T ss_pred ehhHHHHHHhhCcceEEEEEeeecCCHHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHHHHH
Confidence 555666666555568999999999 68999999876554 211111 111122211111 1122233333
Q ss_pred HHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhc---------CCCCC-------------------CeEEEEecCC
Q 004850 270 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNM---------GDQVG-------------------PVKVVPLYST 321 (727)
Q Consensus 270 l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~---------~~~~~-------------------~~~v~~lh~~ 321 (727)
+...+ ...|.+|||++++.+....++.+....... ..... ...+...|++
T Consensus 246 v~~~~--~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAG 323 (766)
T COG1204 246 VLESL--AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAG 323 (766)
T ss_pred HHHHH--hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccC
Confidence 43333 357899999999999999999998532110 00000 1236778999
Q ss_pred CCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhh
Q 004850 322 LPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRS 401 (727)
Q Consensus 322 l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~ 401 (727)
|+.++|..+-+.|+.| +.|||+||.-.+.|+..|.=+.|| .|. .+|||..|+. +++.-++.|..
T Consensus 324 L~~~~R~~vE~~Fr~g-------~ikVlv~TpTLA~GVNLPA~~VII-k~~---~~y~~~~g~~-----~i~~~dv~QM~ 387 (766)
T COG1204 324 LPREDRQLVEDAFRKG-------KIKVLVSTPTLAAGVNLPARTVII-KDT---RRYDPKGGIV-----DIPVLDVLQMA 387 (766)
T ss_pred CCHHHHHHHHHHHhcC-------CceEEEechHHhhhcCCcceEEEE-eee---EEEcCCCCeE-----ECchhhHhhcc
Confidence 9999999999999999 999999999999999999666666 333 5688844433 99999999999
Q ss_pred cccCCCC---CceEEEec-ch--hhhcccCCCCCCCcccccC------chhhHHHHHHcCCC----Ccccc---cCCCC-
Q 004850 402 GRAGRTQ---PGKCFRLY-TE--KSFNNDLQPQTYPEILRSN------LANTVLTLKKLGID----DLVHF---DFMDP- 461 (727)
Q Consensus 402 GRaGR~~---~G~~~~L~-t~--~~~~~~l~~~~~pei~r~~------l~~~~L~lk~~~~~----~~~~~---~~~~~- 461 (727)
|||||.+ -|..+.+- +. .++.........||...+. +...++.+.+.|-. ....| -|..|
T Consensus 388 GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~ 467 (766)
T COG1204 388 GRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQ 467 (766)
T ss_pred CcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhh
Confidence 9999993 45555554 22 1221123334445542111 11222222211100 00000 00001
Q ss_pred -----CcHHHHHHHHHHHHHcC-CcCCCC---CcchhhhhhccCCCChhhhhHHhhcCCCCCh-HHHHHHHHHhcCCCCC
Q 004850 462 -----PAPETLMRALEVLNYLG-ALDDDG---NLTEMGEKMSEFPLDPQMSKMLVESPKYNCS-NEILSISAMLSVPNCF 531 (727)
Q Consensus 462 -----P~~~~i~~a~~~L~~lg-ald~~~---~lT~lG~~l~~lPl~p~~~k~ll~~~~~~c~-~~~l~i~a~ls~~~~f 531 (727)
=....+.+++..|.+.+ .++... .-|++|+.++.+.++|..++.+......--. ...+.+...++..+-|
T Consensus 468 ~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~ 547 (766)
T COG1204 468 TYGEGMLREEILASLRYLEENGLILDADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDL 547 (766)
T ss_pred hccccchHHHHHHHHHHHHhccceeeccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccc
Confidence 13456888999999986 665543 5799999999999999999988765432111 1122222222221111
Q ss_pred C-CchHHHHHHHHHHHHhCCCCCCHH-------------HHH------HHHHHHhhcCCchhhHHhhcCChHHHHHHHHH
Q 004850 532 V-RPREAQKAADEAKARFGHIDGDHL-------------TLL------NVYHAYKQNNEDPSWCYDNFVNHRALKSADNV 591 (727)
Q Consensus 532 ~-~~~~~~~~~~~~~~~~~~~~sD~l-------------~~l------~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i 591 (727)
. .+...++........+. ..+|.+ .++ ..+..|.........+.+.++....+......
T Consensus 548 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~~~~~~ 626 (766)
T COG1204 548 MPIKLRERESSELVLDELE-EQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLLRIAET 626 (766)
T ss_pred hhhhhhhhhhhhhhHHHHH-hcchHHhhccccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHHhhcch
Confidence 1 11111111111011000 111211 112 33446776667777888888888888877777
Q ss_pred HHHH
Q 004850 592 RQQL 595 (727)
Q Consensus 592 ~~ql 595 (727)
+.++
T Consensus 627 a~w~ 630 (766)
T COG1204 627 AEWL 630 (766)
T ss_pred hhhh
Confidence 7776
No 70
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.4e-24 Score=241.56 Aligned_cols=309 Identities=16% Similarity=0.200 Sum_probs=205.9
Q ss_pred cCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHH--HhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 63 KSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQF--VLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 63 ~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~--ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
|+-..-+-|.++|+.+.+|++++++=|||.|||..+-.| +.+|. .++|. |+...-....+.+ ...
T Consensus 14 Gy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~---------TLVVS---PLiSLM~DQV~~l-~~~ 80 (590)
T COG0514 14 GYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGL---------TLVVS---PLISLMKDQVDQL-EAA 80 (590)
T ss_pred CccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCC---------EEEEC---chHHHHHHHHHHH-HHc
Confidence 444455668999999999999999999999999966544 43332 22222 3221111111111 111
Q ss_pred cccccceeceee-------eeccccccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcChhhHHH---HHHHHHH
Q 004850 141 DVTIGEEVGYSI-------RFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDV---LFGLLKE 209 (727)
Q Consensus 141 ~~~~~~~vg~~~-------~~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~~~~d~---ll~ll~~ 209 (727)
|.... .+.... .........-.+.|++|.++..-..-+.+ -..+..+++||||.-+...+. -+..+..
T Consensus 81 Gi~A~-~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~ 159 (590)
T COG0514 81 GIRAA-YLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGR 159 (590)
T ss_pred Cceee-hhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHH
Confidence 11100 000000 00011112346678888887654333222 557889999999986655433 3445555
Q ss_pred HHHhCCCCEEEEEcCcccHHH---HHhhh-cCCCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEe
Q 004850 210 VLKNRPDLKLVVMSATLEAEK---FQGYF-YGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVF 285 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~~~---~~~~f-~~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF 285 (727)
+....|+..++.+|||.+... +...+ .+.+.+.+.+...| .++|...+..+-..... .+.. ......++.+||
T Consensus 160 l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRp-Ni~~~v~~~~~~~~q~~-fi~~-~~~~~~~~GIIY 236 (590)
T COG0514 160 LRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRP-NLALKVVEKGEPSDQLA-FLAT-VLPQLSKSGIIY 236 (590)
T ss_pred HHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCc-hhhhhhhhcccHHHHHH-HHHh-hccccCCCeEEE
Confidence 666677899999999997533 33333 33444443332222 12222222111111111 2222 223456778999
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeE
Q 004850 286 LTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIV 365 (727)
Q Consensus 286 l~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~ 365 (727)
|.|+++++.++++|... ++.+..+||+|+.++|..+.+.|..+ ..+|+|||+....|||.|||+
T Consensus 237 c~sRk~~E~ia~~L~~~---------g~~a~~YHaGl~~~eR~~~q~~f~~~-------~~~iiVAT~AFGMGIdKpdVR 300 (590)
T COG0514 237 CLTRKKVEELAEWLRKN---------GISAGAYHAGLSNEERERVQQAFLND-------EIKVMVATNAFGMGIDKPDVR 300 (590)
T ss_pred EeeHHhHHHHHHHHHHC---------CCceEEecCCCCHHHHHHHHHHHhcC-------CCcEEEEeccccCccCCCCce
Confidence 99999999999999874 79999999999999999999999998 899999999999999999999
Q ss_pred EEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhc
Q 004850 366 YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (727)
Q Consensus 366 ~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~ 422 (727)
|||++++ |.|.++|.|-+|||||. .|-.|+.||++.+..
T Consensus 301 fViH~~l------------------P~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 301 FVIHYDL------------------PGSIESYYQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred EEEEecC------------------CCCHHHHHHHHhhccCCCCcceEEEeeccccHH
Confidence 9999999 99999999999999999 899999999988764
No 71
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=9.4e-24 Score=239.49 Aligned_cols=122 Identities=20% Similarity=0.187 Sum_probs=99.4
Q ss_pred cHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCC
Q 004850 261 DYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKE 340 (727)
Q Consensus 261 ~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~ 340 (727)
++..+++..+...+. ...++|||+++.++++.+++.|.+. ++.+..|||.+++.++..+...+..
T Consensus 457 ~K~~aL~~~i~~~~~--~~~pvLIft~t~~~se~L~~~L~~~---------gi~~~~Lhg~~~~rE~~ii~~ag~~---- 521 (656)
T PRK12898 457 AKWAAVAARVRELHA--QGRPVLVGTRSVAASERLSALLREA---------GLPHQVLNAKQDAEEAAIVARAGQR---- 521 (656)
T ss_pred HHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHC---------CCCEEEeeCCcHHHHHHHHHHcCCC----
Confidence 344444444444332 2457999999999999999999874 6899999999776666555554443
Q ss_pred CCCCCcEEEEecCccccCcccC---CeE-----EEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCce
Q 004850 341 GGPPGRKIVVSTNIAETSLTID---GIV-----YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGK 411 (727)
Q Consensus 341 ~~~~~~kvlvaTniAe~gitIp---~V~-----~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~ 411 (727)
..|+||||+|+||+||+ +|. |||++++ |.|...|.||+|||||. .+|.
T Consensus 522 -----g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~------------------P~s~r~y~hr~GRTGRqG~~G~ 578 (656)
T PRK12898 522 -----GRITVATNMAGRGTDIKLEPGVAARGGLHVILTER------------------HDSARIDRQLAGRCGRQGDPGS 578 (656)
T ss_pred -----CcEEEEccchhcccCcCCccchhhcCCCEEEEcCC------------------CCCHHHHHHhcccccCCCCCeE
Confidence 36999999999999999 777 9999999 99999999999999999 8999
Q ss_pred EEEecchhh
Q 004850 412 CFRLYTEKS 420 (727)
Q Consensus 412 ~~~L~t~~~ 420 (727)
|+.+++.++
T Consensus 579 s~~~is~eD 587 (656)
T PRK12898 579 YEAILSLED 587 (656)
T ss_pred EEEEechhH
Confidence 999999755
No 72
>PRK14701 reverse gyrase; Provisional
Probab=99.91 E-value=4.4e-24 Score=264.50 Aligned_cols=324 Identities=14% Similarity=0.102 Sum_probs=203.4
Q ss_pred HHHHHHH-hcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHH
Q 004850 55 YYEILEK-RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVS 133 (727)
Q Consensus 55 ~~~~l~~-~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~ 133 (727)
+.+.+++ .|+ .++++|.++++.+.+|++++++||||||||+.+..+.+... . ...+.++++||+++..|+....
T Consensus 68 ~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-~---~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 68 FEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-L---KGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred HHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-h---cCCeEEEEECHHHHHHHHHHHH
Confidence 3445554 677 69999999999999999999999999999993222221110 0 1134677888888888887777
Q ss_pred HHHHHhccccc--cceeceeeeecc------ccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhh------
Q 004850 134 RRVAEEMDVTI--GEEVGYSIRFED------CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLA------ 199 (727)
Q Consensus 134 ~~v~~~~~~~~--~~~vg~~~~~~~------~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~------ 199 (727)
+.++...+..+ ....|.....+. .......|.+.|||.+...+... ...+++++|+||||. ++.
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~~~~i~~iVVDEAD~-ml~~~knid 220 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-KHLKFDFIFVDDVDA-FLKASKNID 220 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-hhCCCCEEEEECcee-ccccccccc
Confidence 77766553222 122222111111 11224678899999887754432 236799999999995 332
Q ss_pred -----HHHHHHHHH-------------------------HHHHhCC-CCE-EEEEcCcccH-HHHHhhhcCCCeeeeCCC
Q 004850 200 -----TDVLFGLLK-------------------------EVLKNRP-DLK-LVVMSATLEA-EKFQGYFYGAPLMKVPGR 246 (727)
Q Consensus 200 -----~d~ll~ll~-------------------------~l~~~~~-~~~-vil~SATl~~-~~~~~~f~~~p~i~v~g~ 246 (727)
.+|.-++.. ......| ..+ ++++|||+.. .....+|...-.+.+...
T Consensus 221 ~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~ 300 (1638)
T PRK14701 221 RSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSG 300 (1638)
T ss_pred hhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCC
Confidence 223111111 1111112 334 6789999975 233444543323333322
Q ss_pred ---ccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHH---HHHHHHHHHHHhhcCCCCCCeEEEEecC
Q 004850 247 ---LHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEI---EDACRKITKEITNMGDQVGPVKVVPLYS 320 (727)
Q Consensus 247 ---~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei---~~l~~~L~~~~~~~~~~~~~~~v~~lh~ 320 (727)
...+.+.|......++ .. +..+.... ....||||++++.+ +.+++.|... ++.+..+||
T Consensus 301 ~~~lr~i~~~yi~~~~~~k-~~----L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~---------Gi~a~~~h~ 365 (1638)
T PRK14701 301 RSALRNIVDVYLNPEKIIK-EH----VRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED---------GFKIELVSA 365 (1638)
T ss_pred CCCCCCcEEEEEECCHHHH-HH----HHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC---------CCeEEEecc
Confidence 2346666664432222 22 22222222 34689999998865 7888888763 799999999
Q ss_pred CCCHHHHhhhcCCCCCCCCCCCCCCcEEEEec----CccccCcccCC-eEEEEcCCCcccee----eccccCcccccccc
Q 004850 321 TLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST----NIAETSLTIDG-IVYVIDPGFAKQKV----YNPRVRVESLLVSP 391 (727)
Q Consensus 321 ~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaT----niAe~gitIp~-V~~VId~g~~k~~~----~~~~~~~~~l~~~p 391 (727)
+ |.++++.|++| ..+|+||| |+|+||||+|+ |+|||++|++|.+. |.+.... + +
T Consensus 366 ~-----R~~~l~~F~~G-------~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~--~---~ 428 (1638)
T PRK14701 366 K-----NKKGFDLFEEG-------EIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR--I---L 428 (1638)
T ss_pred h-----HHHHHHHHHcC-------CCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh--h---h
Confidence 5 88899999999 89999999 69999999999 99999999977442 2222111 0 0
Q ss_pred ccHhhHHhhhcccCCC-CCceEEEecch
Q 004850 392 ISKASAHQRSGRAGRT-QPGKCFRLYTE 418 (727)
Q Consensus 392 is~~~~~qR~GRaGR~-~~G~~~~L~t~ 418 (727)
. .....++.|||||. .++.|+..+..
T Consensus 429 ~-~~~~~~~~~~a~~~g~~~~~~~~~~~ 455 (1638)
T PRK14701 429 G-LLSEILKIEEELKEGIPIEGVLDVFP 455 (1638)
T ss_pred c-chHHHHHhhhhcccCCcchhHHHhHH
Confidence 0 23345667999998 67777654443
No 73
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=6.7e-24 Score=206.80 Aligned_cols=303 Identities=16% Similarity=0.204 Sum_probs=220.0
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcc
Q 004850 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (727)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (727)
..|.++-+.+++..++-..|+-.|..+|.+.||..--|-+|+..+.+|-|||..|.+..++..+.... .-..++++-|+
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g-~vsvlvmchtr 120 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDG-QVSVLVMCHTR 120 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCC-eEEEEEEeccH
Confidence 46888888999999999999999999999999998889999999999999999998887776533221 12245667789
Q ss_pred cchhhhccHHHHHHHhcc-ccccceece-eeeecccc-ccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcChhh
Q 004850 124 PRRVAAMSVSRRVAEEMD-VTIGEEVGY-SIRFEDCS-SARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA 199 (727)
Q Consensus 124 p~~~~~~~v~~~v~~~~~-~~~~~~vg~-~~~~~~~~-~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~~~ 199 (727)
+++.|+....+++++.+. .++.--.|. .+..+... ..-..|++.|||+++.+...+.+ +.+++++||||+|. ++.
T Consensus 121 elafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdk-mle 199 (387)
T KOG0329|consen 121 ELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDK-MLE 199 (387)
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHH-HHH
Confidence 999999888999988763 333333332 22222111 12457889999999998887776 99999999999984 444
Q ss_pred HHHHHHHHHHHHHhCC-CCEEEEEcCcccH--HHHHhhhcCCCe-eeeCC----CccceeeeeccCCcccHHHHHHHHHH
Q 004850 200 TDVLFGLLKEVLKNRP-DLKLVVMSATLEA--EKFQGYFYGAPL-MKVPG----RLHPVEIFYTQEPERDYLEAAIRTVV 271 (727)
Q Consensus 200 ~d~ll~ll~~l~~~~~-~~~vil~SATl~~--~~~~~~f~~~p~-i~v~g----~~~~v~~~y~~~~~~~~~~~~~~~l~ 271 (727)
.-.+..-+.++.+..| +.|+++||||++. .-.+..|...|. +.+.. ..|.+.++|..-...++-..+.+. +
T Consensus 200 ~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dL-L 278 (387)
T KOG0329|consen 200 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDL-L 278 (387)
T ss_pred HHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhh-h
Confidence 4445555566655444 8899999999964 445666655543 33332 246677888765544443322222 1
Q ss_pred HHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEe
Q 004850 272 QIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVS 351 (727)
Q Consensus 272 ~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlva 351 (727)
.. -.-..++||+.+... | + | . +| +||
T Consensus 279 d~---LeFNQVvIFvKsv~R-------l-----------------------~----------f--~-------kr--~va 304 (387)
T KOG0329|consen 279 DV---LEFNQVVIFVKSVQR-------L-----------------------S----------F--Q-------KR--LVA 304 (387)
T ss_pred hh---hhhcceeEeeehhhh-------h-----------------------h----------h--h-------hh--hHH
Confidence 21 122368888866432 0 0 1 1 34 999
Q ss_pred cCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhh
Q 004850 352 TNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (727)
Q Consensus 352 TniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~ 421 (727)
||+..||+||..|..|+|||+ |-+..+|.||+|||||. ..|.++.+.+.+.-
T Consensus 305 t~lfgrgmdiervNi~~NYdm------------------p~~~DtYlHrv~rAgrfGtkglaitfvs~e~d 357 (387)
T KOG0329|consen 305 TDLFGRGMDIERVNIVFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAITFVSDEND 357 (387)
T ss_pred hhhhccccCcccceeeeccCC------------------CCCchHHHHHhhhhhccccccceeehhcchhh
Confidence 999999999999999999999 99999999999999999 77999999986544
No 74
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.90 E-value=3e-23 Score=252.55 Aligned_cols=289 Identities=18% Similarity=0.150 Sum_probs=186.1
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHH
Q 004850 55 YYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSR 134 (727)
Q Consensus 55 ~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~ 134 (727)
+.+.+.......++++|...++.+..|++++++||||||||+.+ .++...... ...+.++++||+++..|......
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~-l~~~~~l~~---~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFG-LAMSLFLAK---KGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHHHHHh---cCCeEEEEeCHHHHHHHHHHHHH
Confidence 33444444556899999999999999999999999999999843 333221111 12346778899888888887777
Q ss_pred HHHHhccccccc---eeceeeeec------cccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhh------
Q 004850 135 RVAEEMDVTIGE---EVGYSIRFE------DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLA------ 199 (727)
Q Consensus 135 ~v~~~~~~~~~~---~vg~~~~~~------~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~------ 199 (727)
.++...+..... ..|.....+ ........|.+.|+|++.+.+..- ..+++++|+||||. +++
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~~~~~iVvDEaD~-~L~~~k~vd 219 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GPKFDFIFVDDVDA-LLKASKNVD 219 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cCCCCEEEEeChHh-hhhccccHH
Confidence 777765533221 112111000 011224678899999998765431 12899999999994 444
Q ss_pred -----HHHHHHHHHHH----------------------HHh-CCCC--EEEEEcCcc-cHHHHHhhhcCCCeeeeCCC--
Q 004850 200 -----TDVLFGLLKEV----------------------LKN-RPDL--KLVVMSATL-EAEKFQGYFYGAPLMKVPGR-- 246 (727)
Q Consensus 200 -----~d~ll~ll~~l----------------------~~~-~~~~--~vil~SATl-~~~~~~~~f~~~p~i~v~g~-- 246 (727)
++|.-+.+..+ .+. .+.. +++++|||. +...-..+|...-.+.+...
T Consensus 220 ~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~ 299 (1171)
T TIGR01054 220 KLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSD 299 (1171)
T ss_pred HHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccc
Confidence 11111111111 111 1122 367799995 32211123322222333322
Q ss_pred -ccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCH---HHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCC
Q 004850 247 -LHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE---EEIEDACRKITKEITNMGDQVGPVKVVPLYSTL 322 (727)
Q Consensus 247 -~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~---~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l 322 (727)
...+.+.|..... ....+.. +.... .+.+|||++++ +.++.+++.|.+. ++.+..+||++
T Consensus 300 ~~r~I~~~~~~~~~--~~~~L~~----ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~---------g~~a~~lhg~~ 363 (1171)
T TIGR01054 300 TLRNVVDVYVEDED--LKETLLE----IVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENH---------GVKAVAYHATK 363 (1171)
T ss_pred cccceEEEEEeccc--HHHHHHH----HHHHc-CCCEEEEEeccccHHHHHHHHHHHHhC---------CceEEEEeCCC
Confidence 2356667764332 1222222 22222 34689999999 9999999999764 68999999999
Q ss_pred CHHHHhhhcCCCCCCCCCCCCCCcEEEEe----cCccccCcccCC-eEEEEcCCCcccee
Q 004850 323 PPAMQQKIFEPAPPPSKEGGPPGRKIVVS----TNIAETSLTIDG-IVYVIDPGFAKQKV 377 (727)
Q Consensus 323 ~~~~r~~~~~~~~~g~~~~~~~~~kvlva----TniAe~gitIp~-V~~VId~g~~k~~~ 377 (727)
++ .+++.|++| +.+|||| ||+|+||||||+ |+|||++|+++.+.
T Consensus 364 ~~----~~l~~Fr~G-------~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~~ 412 (1171)
T TIGR01054 364 PK----EDYEKFAEG-------EIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFKV 412 (1171)
T ss_pred CH----HHHHHHHcC-------CCCEEEEeccccCcccccCCCCccccEEEEECCCCEEE
Confidence 73 578999999 8999999 599999999999 89999999998864
No 75
>PRK13766 Hef nuclease; Provisional
Probab=99.90 E-value=5.8e-23 Score=246.35 Aligned_cols=316 Identities=19% Similarity=0.205 Sum_probs=198.3
Q ss_pred CCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccc-
Q 004850 64 SLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (727)
Q Consensus 64 ~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (727)
.+.+..+|.++...+..+ +++++.|||+|||.++..++.... .. ...+.++++|+.++..|.... +.+..+.
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l--~~-~~~~vLvl~Pt~~L~~Q~~~~---~~~~~~~~ 85 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERL--HK-KGGKVLILAPTKPLVEQHAEF---FRKFLNIP 85 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHH--Hh-CCCeEEEEeCcHHHHHHHHHH---HHHHhCCC
Confidence 456778899998888777 678899999999987665544322 11 112345566666655554433 3333322
Q ss_pred --cccceeceeeeecc-ccccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCE
Q 004850 143 --TIGEEVGYSIRFED-CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLK 218 (727)
Q Consensus 143 --~~~~~vg~~~~~~~-~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~ 218 (727)
.+....|.....+. ....+..+.++|++.+...++...+ +.++++||+||||. .........+++.+....+...
T Consensus 86 ~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~-~~~~~~~~~i~~~~~~~~~~~~ 164 (773)
T PRK13766 86 EEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHR-AVGNYAYVYIAERYHEDAKNPL 164 (773)
T ss_pred CceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcc-ccccccHHHHHHHHHhcCCCCE
Confidence 22211221110000 0112457889999998877766554 78999999999994 3333222233344444444667
Q ss_pred EEEEcCccc--HHHHHhhhcC--CCeeeeCCC--------ccceeeeecc------------------------------
Q 004850 219 LVVMSATLE--AEKFQGYFYG--APLMKVPGR--------LHPVEIFYTQ------------------------------ 256 (727)
Q Consensus 219 vil~SATl~--~~~~~~~f~~--~p~i~v~g~--------~~~v~~~y~~------------------------------ 256 (727)
++.+|||.. .+.+.....+ ...+.+... ..+.++.+..
T Consensus 165 il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~ 244 (773)
T PRK13766 165 VLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGV 244 (773)
T ss_pred EEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999972 2222111100 000000000 0000000000
Q ss_pred --------------------------C-----------------------------------------------------
Q 004850 257 --------------------------E----------------------------------------------------- 257 (727)
Q Consensus 257 --------------------------~----------------------------------------------------- 257 (727)
.
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~ 324 (773)
T PRK13766 245 IVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASK 324 (773)
T ss_pred cccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHH
Confidence 0
Q ss_pred -------------------CcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEe
Q 004850 258 -------------------PERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPL 318 (727)
Q Consensus 258 -------------------~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~l 318 (727)
....+...+.+.+..+....+.+++|||+++++.++.+++.|... ++.+..+
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~---------~~~~~~~ 395 (773)
T PRK13766 325 RLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE---------GIKAVRF 395 (773)
T ss_pred HHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC---------CCceEEE
Confidence 000011111111222222245789999999999999999999653 5667778
Q ss_pred cCC--------CCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccc
Q 004850 319 YST--------LPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVS 390 (727)
Q Consensus 319 h~~--------l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~ 390 (727)
||. |++.+|.++++.|+.| ..+|+|||+++++|+|+|++++||+|+.
T Consensus 396 ~g~~~~~~~~~~~~~~r~~~~~~F~~g-------~~~vLvaT~~~~eGldi~~~~~VI~yd~------------------ 450 (773)
T PRK13766 396 VGQASKDGDKGMSQKEQIEILDKFRAG-------EFNVLVSTSVAEEGLDIPSVDLVIFYEP------------------ 450 (773)
T ss_pred EccccccccCCCCHHHHHHHHHHHHcC-------CCCEEEECChhhcCCCcccCCEEEEeCC------------------
Confidence 776 9999999999999998 7899999999999999999999999888
Q ss_pred cccHhhHHhhhcccCCCCCceEEEecchhhh
Q 004850 391 PISKASAHQRSGRAGRTQPGKCFRLYTEKSF 421 (727)
Q Consensus 391 pis~~~~~qR~GRaGR~~~G~~~~L~t~~~~ 421 (727)
|.+...|+||+||+||.++|.+|.|+++...
T Consensus 451 ~~s~~r~iQR~GR~gR~~~~~v~~l~~~~t~ 481 (773)
T PRK13766 451 VPSEIRSIQRKGRTGRQEEGRVVVLIAKGTR 481 (773)
T ss_pred CCCHHHHHHHhcccCcCCCCEEEEEEeCCCh
Confidence 7889999999999999999999999986543
No 76
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.90 E-value=5.1e-24 Score=220.74 Aligned_cols=225 Identities=22% Similarity=0.272 Sum_probs=157.8
Q ss_pred CccccccChHHHHHHHhccc-cccCCeeEEeeccCcCh--hhHHHHHHHHHHHHHhC---CCCEEEEEcCccc---HHHH
Q 004850 161 RTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHERT--LATDVLFGLLKEVLKNR---PDLKLVVMSATLE---AEKF 231 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~-ll~~~~~lIlDEaher~--~~~d~ll~ll~~l~~~~---~~~~vil~SATl~---~~~~ 231 (727)
.+.|++.|+|++...+.... .+.+..++++||++.-. -..|++..+-..+.+.. ..++.++.|||+. +...
T Consensus 339 g~~ivvGtpgRl~~~is~g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~ 418 (725)
T KOG0349|consen 339 GTHIVVGTPGRLLQPISKGLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKV 418 (725)
T ss_pred CceeeecCchhhhhhhhccceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeeh
Confidence 67899999999988776654 48899999999997421 23455555544443321 2578999999983 4444
Q ss_pred HhhhcCCCe-eeeCCC------ccceeee--------e------c---cCCccc----------HHHHHHHH------HH
Q 004850 232 QGYFYGAPL-MKVPGR------LHPVEIF--------Y------T---QEPERD----------YLEAAIRT------VV 271 (727)
Q Consensus 232 ~~~f~~~p~-i~v~g~------~~~v~~~--------y------~---~~~~~~----------~~~~~~~~------l~ 271 (727)
++.....|. +...|. .|.|-.. + + ..+..+ ....++.. +.
T Consensus 419 ~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ 498 (725)
T KOG0349|consen 419 GERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVV 498 (725)
T ss_pred hhhhccCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhh
Confidence 443332221 111111 1100000 0 0 000000 11111111 11
Q ss_pred HHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEe
Q 004850 272 QIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVS 351 (727)
Q Consensus 272 ~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlva 351 (727)
.| ......+.++||.|+.+|+.+.+++.++- ...+.++++||+..++||..-++.|+.+ ..|.++|
T Consensus 499 ai-~~h~mdkaiifcrtk~dcDnLer~~~qkg------g~~~scvclhgDrkP~Erk~nle~Fkk~-------dvkflic 564 (725)
T KOG0349|consen 499 AI-RRHAMDKAIIFCRTKQDCDNLERMMNQKG------GKHYSCVCLHGDRKPDERKANLESFKKF-------DVKFLIC 564 (725)
T ss_pred hh-hhhccCceEEEEeccccchHHHHHHHHcC------CccceeEEEecCCChhHHHHHHHhhhhc-------CeEEEEE
Confidence 11 12335679999999999999999998752 1368999999999999999999999998 8999999
Q ss_pred cCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecc
Q 004850 352 TNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYT 417 (727)
Q Consensus 352 TniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t 417 (727)
||||+|||||-++-|+||--+ |-++.+|+||+||.||+ +-|.+++|+.
T Consensus 565 tdvaargldi~g~p~~invtl------------------pd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 565 TDVAARGLDITGLPFMINVTL------------------PDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred ehhhhccccccCCceEEEEec------------------CcccchhhhhhhccchhhhcceeEEEee
Confidence 999999999999999999888 99999999999999999 8899999975
No 77
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.90 E-value=1.1e-22 Score=231.17 Aligned_cols=296 Identities=14% Similarity=0.095 Sum_probs=186.0
Q ss_pred CCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhcccc
Q 004850 64 SLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (727)
Q Consensus 64 ~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (727)
...+.++|.++++.+..++..++.+|||+|||..+....... ... ...+.++++|+.++..|.....+.+.......
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~--~~~-~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~ 188 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYY--LEN-YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREA 188 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH--Hhc-CCCeEEEEECcHHHHHHHHHHHHHhccccccc
Confidence 357889999999998888889999999999998665322100 011 11135556666665555443333222111111
Q ss_pred ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEc
Q 004850 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMS 223 (727)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~S 223 (727)
+....|.. .......|.+.|++.+.+.. ...+.++++||+||+|. ... ..+..+++.+ .+..+++.+|
T Consensus 189 ~~~i~~g~-----~~~~~~~I~VaT~qsl~~~~--~~~~~~~~~iIvDEaH~-~~~-~~~~~il~~~---~~~~~~lGLT 256 (501)
T PHA02558 189 MHKIYSGT-----AKDTDAPIVVSTWQSAVKQP--KEWFDQFGMVIVDECHL-FTG-KSLTSIITKL---DNCKFKFGLT 256 (501)
T ss_pred eeEEecCc-----ccCCCCCEEEeeHHHHhhch--hhhccccCEEEEEchhc-ccc-hhHHHHHHhh---hccceEEEEe
Confidence 11111211 11134678899999886543 23578999999999995 332 2333333332 1245799999
Q ss_pred CcccHH---H--HHhhhcCCCeeee-------CCCccceeee--eccCC--------cccHH-------------HHHHH
Q 004850 224 ATLEAE---K--FQGYFYGAPLMKV-------PGRLHPVEIF--YTQEP--------ERDYL-------------EAAIR 268 (727)
Q Consensus 224 ATl~~~---~--~~~~f~~~p~i~v-------~g~~~~v~~~--y~~~~--------~~~~~-------------~~~~~ 268 (727)
||.... . +..+|+. ....+ .|...++++. +...+ ..+|. ..+..
T Consensus 257 ATp~~~~~~~~~~~~~fG~-i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~ 335 (501)
T PHA02558 257 GSLRDGKANILQYVGLFGD-IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIAN 335 (501)
T ss_pred ccCCCccccHHHHHHhhCC-ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHH
Confidence 998421 1 2234442 11111 1211111111 11000 00110 01111
Q ss_pred HHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEE
Q 004850 269 TVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKI 348 (727)
Q Consensus 269 ~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kv 348 (727)
.+..+. ...+++|||+...+.++.+++.|... +..+..+||++++++|..+++.|+.| ...|
T Consensus 336 ~~~~~~--~~~~~~lV~~~~~~h~~~L~~~L~~~---------g~~v~~i~G~~~~~eR~~i~~~~~~~-------~~~v 397 (501)
T PHA02558 336 LALKLA--KKGENTFVMFKYVEHGKPLYEMLKKV---------YDKVYYVSGEVDTEDRNEMKKIAEGG-------KGII 397 (501)
T ss_pred HHHHHH--hcCCCEEEEEEEHHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHHHHHHHHHhCC-------CCeE
Confidence 111221 34568999999999999999999874 57899999999999999999999887 7789
Q ss_pred EEec-CccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCCCce
Q 004850 349 VVST-NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGK 411 (727)
Q Consensus 349 lvaT-niAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~ 411 (727)
|||| +++++|+|+|++++||.+.. +.|...|+||+||+||..+|+
T Consensus 398 LvaT~~~l~eG~Dip~ld~vIl~~p------------------~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 398 IVASYGVFSTGISIKNLHHVIFAHP------------------SKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EEEEcceeccccccccccEEEEecC------------------CcchhhhhhhhhccccCCCCC
Confidence 9998 99999999999999998766 778899999999999996653
No 78
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=1.2e-22 Score=235.21 Aligned_cols=314 Identities=21% Similarity=0.201 Sum_probs=203.4
Q ss_pred CCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhcccc
Q 004850 64 SLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (727)
Q Consensus 64 ~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (727)
-+-++++|......+.+|. ++...||+|||..+..+++... +. +....++.|+..++.+.......+.+.++.+
T Consensus 76 g~~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~a-l~---G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~ 149 (790)
T PRK09200 76 GMRPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNA-LE---GKGVHLITVNDYLAKRDAEEMGQVYEFLGLT 149 (790)
T ss_pred CCCCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHH-Hc---CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCe
Confidence 4577899988888998887 7799999999998887776332 11 1235567777777777777777788888888
Q ss_pred ccceeceee-eeccccccCccccccChHHHH----HH-Hhc---cccccCCeeEEeeccCcChhhHH-------------
Q 004850 144 IGEEVGYSI-RFEDCSSARTVLKYLTDGMLL----RE-AMT---DPLLERYKVIVLDEAHERTLATD------------- 201 (727)
Q Consensus 144 ~~~~vg~~~-~~~~~~~~~~~i~~lT~G~l~----r~-~~~---~~ll~~~~~lIlDEaher~~~~d------------- 201 (727)
++..+|... ..+........|.|.|+|++. +- +.. ...+.+..++|+||||.-.++..
T Consensus 150 v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~ 229 (790)
T PRK09200 150 VGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQ 229 (790)
T ss_pred EEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCccc
Confidence 877776443 222222235789999999992 22 111 12467889999999874222110
Q ss_pred -HHHHHHHHHHHhC---------CCCEEEEEcC-ccc-HHH-----------------------HHhhhc--C-------
Q 004850 202 -VLFGLLKEVLKNR---------PDLKLVVMSA-TLE-AEK-----------------------FQGYFY--G------- 237 (727)
Q Consensus 202 -~ll~ll~~l~~~~---------~~~~vil~SA-Tl~-~~~-----------------------~~~~f~--~------- 237 (727)
.+......+.... ...+.+.++. -+. .+. -+.++. +
T Consensus 230 ~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~ 309 (790)
T PRK09200 230 SNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYD 309 (790)
T ss_pred cHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEEC
Confidence 1233333333211 0112222222 110 010 011110 0
Q ss_pred CCeeee--------CCCccc------------eee--------------------------------------------e
Q 004850 238 APLMKV--------PGRLHP------------VEI--------------------------------------------F 253 (727)
Q Consensus 238 ~p~i~v--------~g~~~~------------v~~--------------------------------------------~ 253 (727)
..++.| +|+.++ +++ .
T Consensus 310 ~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~ 389 (790)
T PRK09200 310 GEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVV 389 (790)
T ss_pred CEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcEE
Confidence 111111 121110 000 0
Q ss_pred eccC---------------CcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEe
Q 004850 254 YTQE---------------PERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPL 318 (727)
Q Consensus 254 y~~~---------------~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~l 318 (727)
..+. ...++..+++..+...+ ....++|||+++.+.++.++..|.+. ++.+..|
T Consensus 390 ~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~--~~~~pvLIf~~t~~~se~l~~~L~~~---------gi~~~~L 458 (790)
T PRK09200 390 QIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERH--ETGRPVLIGTGSIEQSETFSKLLDEA---------GIPHNLL 458 (790)
T ss_pred ECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC---------CCCEEEe
Confidence 0000 01223344444444433 24668999999999999999999874 6889999
Q ss_pred cCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCccc---CCeE-----EEEcCCCccceeeccccCccccccc
Q 004850 319 YSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTI---DGIV-----YVIDPGFAKQKVYNPRVRVESLLVS 390 (727)
Q Consensus 319 h~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitI---p~V~-----~VId~g~~k~~~~~~~~~~~~l~~~ 390 (727)
||.+.+.++..+...+.+| +|+||||+|+||+|| |+|. |||++++
T Consensus 459 ~~~~~~~e~~~i~~ag~~g---------~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~------------------ 511 (790)
T PRK09200 459 NAKNAAKEAQIIAEAGQKG---------AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTER------------------ 511 (790)
T ss_pred cCCccHHHHHHHHHcCCCC---------eEEEEccchhcCcCCCcccccccccCcEEEeccC------------------
Confidence 9999999888887777654 699999999999999 7999 9999999
Q ss_pred cccHhhHHhhhcccCCC-CCceEEEecchhhh
Q 004850 391 PISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (727)
Q Consensus 391 pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~ 421 (727)
|.|...|.||+|||||. .+|.|+.+++.++.
T Consensus 512 p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 512 MESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred CCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 99999999999999999 89999999997554
No 79
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.6e-22 Score=215.93 Aligned_cols=317 Identities=19% Similarity=0.200 Sum_probs=208.2
Q ss_pred CCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccc
Q 004850 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (727)
Q Consensus 65 lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (727)
+.+-.+|..+......+ ++.++-|||=|||+....++.+...... ...+.++||.|+..|-...+..+..-....+
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~---~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i 89 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG---GKVLFLAPTKPLVLQHAEFCRKVTGIPEDEI 89 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC---CeEEEecCCchHHHHHHHHHHHHhCCChhhe
Confidence 44556777777776665 6777899999999987766654432222 1256678888887775554444432222223
Q ss_pred cceeceeeeeccc-cccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEE
Q 004850 145 GEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVM 222 (727)
Q Consensus 145 ~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~ 222 (727)
....|-....+.. ...+.++.+.||-....-+.+..+ +.++.++|+|||| |.......-.+.+.+.+...+..++.+
T Consensus 90 ~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~ilgL 168 (542)
T COG1111 90 AALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLILGL 168 (542)
T ss_pred eeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEEEE
Confidence 3333322111111 124678889999999888877665 9999999999999 666666666777777776667889999
Q ss_pred cCcc--cHHHHHhhhcCCCe--eee--CC----C--ccceeeeeccCC--------------------------------
Q 004850 223 SATL--EAEKFQGYFYGAPL--MKV--PG----R--LHPVEIFYTQEP-------------------------------- 258 (727)
Q Consensus 223 SATl--~~~~~~~~f~~~p~--i~v--~g----~--~~~v~~~y~~~~-------------------------------- 258 (727)
|||. +.+.+.+...+-.+ +.+ +. + ...+++.+....
T Consensus 169 TASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~ 248 (542)
T COG1111 169 TASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESS 248 (542)
T ss_pred ecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceecc
Confidence 9998 44444433321110 110 00 0 011122111100
Q ss_pred ----ccc-------------------------------------------------H-----------------------
Q 004850 259 ----ERD-------------------------------------------------Y----------------------- 262 (727)
Q Consensus 259 ----~~~-------------------------------------------------~----------------------- 262 (727)
..+ |
T Consensus 249 ~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~ 328 (542)
T COG1111 249 SPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADP 328 (542)
T ss_pred CcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcCh
Confidence 000 0
Q ss_pred ---------------------HHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEe---
Q 004850 263 ---------------------LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPL--- 318 (727)
Q Consensus 263 ---------------------~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~l--- 318 (727)
++.+...+.......+..+++||..-++..+.+.+.|.... +... ..+
T Consensus 329 ~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~-------~~~~-~rFiGQ 400 (542)
T COG1111 329 YFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIG-------IKAR-VRFIGQ 400 (542)
T ss_pred hhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcC-------Ccce-eEEeec
Confidence 00001111111222345689999999999999999997742 1222 122
Q ss_pred -----cCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCcccccccccc
Q 004850 319 -----YSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPIS 393 (727)
Q Consensus 319 -----h~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis 393 (727)
-.+|+|.+|.++++.|+.| ..+|+|||.|+|-|||||+|++||=|+. -.|
T Consensus 401 a~r~~~~GMsQkeQ~eiI~~Fr~G-------e~nVLVaTSVgEEGLDIp~vDlVifYEp------------------vpS 455 (542)
T COG1111 401 ASREGDKGMSQKEQKEIIDQFRKG-------EYNVLVATSVGEEGLDIPEVDLVIFYEP------------------VPS 455 (542)
T ss_pred cccccccccCHHHHHHHHHHHhcC-------CceEEEEcccccccCCCCcccEEEEecC------------------CcH
Confidence 2469999999999999999 8999999999999999999999998765 456
Q ss_pred HhhHHhhhcccCCCCCceEEEecchh
Q 004850 394 KASAHQRSGRAGRTQPGKCFRLYTEK 419 (727)
Q Consensus 394 ~~~~~qR~GRaGR~~~G~~~~L~t~~ 419 (727)
.--++||.|||||.++|.+|-|+++.
T Consensus 456 eIR~IQR~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 456 EIRSIQRKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred HHHHHHhhCccccCCCCeEEEEEecC
Confidence 66799999999999999999999986
No 80
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.89 E-value=6.6e-22 Score=226.95 Aligned_cols=121 Identities=21% Similarity=0.207 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCC
Q 004850 262 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEG 341 (727)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~ 341 (727)
+..+++..+.+.+. ...++|||+++.+.++.++..|.+. ++.+..|||.+.+.++..+...+..|
T Consensus 409 K~~ai~~~i~~~~~--~~~pvLIft~s~~~se~ls~~L~~~---------gi~~~~L~a~~~~~E~~ii~~ag~~g---- 473 (762)
T TIGR03714 409 KLMATLEDVKEYHE--TGQPVLLITGSVEMSEIYSELLLRE---------GIPHNLLNAQNAAKEAQIIAEAGQKG---- 473 (762)
T ss_pred HHHHHHHHHHHHhh--CCCCEEEEECcHHHHHHHHHHHHHC---------CCCEEEecCCChHHHHHHHHHcCCCC----
Confidence 44555555555443 4568999999999999999999874 68889999999999998888877755
Q ss_pred CCCCcEEEEecCccccCcccC---------CeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCce
Q 004850 342 GPPGRKIVVSTNIAETSLTID---------GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGK 411 (727)
Q Consensus 342 ~~~~~kvlvaTniAe~gitIp---------~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~ 411 (727)
+|+||||+|+||+||+ |+.+||++.. |....+ .||+|||||. .||.
T Consensus 474 -----~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~------------------ps~rid-~qr~GRtGRqG~~G~ 529 (762)
T TIGR03714 474 -----AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERM------------------ENSRVD-LQLRGRSGRQGDPGS 529 (762)
T ss_pred -----eEEEEccccccccCCCCCccccccCCeEEEEecCC------------------CCcHHH-HHhhhcccCCCCcee
Confidence 7999999999999999 9999999988 777666 9999999999 8999
Q ss_pred EEEecchhhh
Q 004850 412 CFRLYTEKSF 421 (727)
Q Consensus 412 ~~~L~t~~~~ 421 (727)
|+.+++.++.
T Consensus 530 s~~~is~eD~ 539 (762)
T TIGR03714 530 SQFFVSLEDD 539 (762)
T ss_pred EEEEEccchh
Confidence 9999997554
No 81
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.88 E-value=5.8e-22 Score=234.33 Aligned_cols=331 Identities=22% Similarity=0.276 Sum_probs=220.3
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHH
Q 004850 55 YYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSR 134 (727)
Q Consensus 55 ~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~ 134 (727)
+...+..++...+|.||.+.+..+.+|++|+|+.+||||||..|..++++.. +..+. .+.+.+.||.-+. ....+
T Consensus 59 l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~-l~~~~-a~AL~lYPtnALa---~DQ~~ 133 (851)
T COG1205 59 LKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHL-LRDPS-ARALLLYPTNALA---NDQAE 133 (851)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHH-hhCcC-ccEEEEechhhhH---hhHHH
Confidence 4666778888889999999999999999999999999999999999999886 43322 2456677766554 34444
Q ss_pred HHHH---hccc--cccceeceeeeecc--ccccCccccccChHHHHHHHhccc-----cccCCeeEEeeccCcCh--h--
Q 004850 135 RVAE---EMDV--TIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDP-----LLERYKVIVLDEAHERT--L-- 198 (727)
Q Consensus 135 ~v~~---~~~~--~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~-----ll~~~~~lIlDEaher~--~-- 198 (727)
++.+ ..+. ..+..-|-....+. .......|.+.+|.|+-..++... ++.+.++||+||+|--. .
T Consensus 134 rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS 213 (851)
T COG1205 134 RLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGS 213 (851)
T ss_pred HHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchh
Confidence 4443 3332 11111111111111 112356777788888777665432 37889999999998311 1
Q ss_pred hHHHHHHHHHHHHHhCC-CCEEEEEcCcc-cHHHHHhhhcCCCeee-eC--CCccceeeeeccCC---------cccHHH
Q 004850 199 ATDVLFGLLKEVLKNRP-DLKLVVMSATL-EAEKFQGYFYGAPLMK-VP--GRLHPVEIFYTQEP---------ERDYLE 264 (727)
Q Consensus 199 ~~d~ll~ll~~l~~~~~-~~~vil~SATl-~~~~~~~~f~~~p~i~-v~--g~~~~v~~~y~~~~---------~~~~~~ 264 (727)
+...++.-|+++.+..+ +.|+|.+|||+ +...++.-+.+...-. +. |....-..++...| ..+...
T Consensus 214 ~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~ 293 (851)
T COG1205 214 EVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALA 293 (851)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHH
Confidence 11224444444444333 78999999999 5555554333333322 33 33333333333333 112221
Q ss_pred HHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCC
Q 004850 265 AAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPP 344 (727)
Q Consensus 265 ~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~ 344 (727)
. ...+....- ...-..|||+.++..++.+.......+...+ ......+..+||++...+|.++...|+.|
T Consensus 294 ~-~~~~~~~~~-~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~~l~~~v~~~~~~~~~~er~~ie~~~~~g------- 363 (851)
T COG1205 294 E-LATLAALLV-RNGIQTLVFFRSRKQVELLYLSPRRRLVREG-GKLLDAVSTYRAGLHREERRRIEAEFKEG------- 363 (851)
T ss_pred H-HHHHHHHHH-HcCceEEEEEehhhhhhhhhhchhHHHhhcc-hhhhhheeeccccCCHHHHHHHHHHHhcC-------
Confidence 1 111111111 2345799999999999998755555443333 12235689999999999999999999999
Q ss_pred CcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccc-cHhhHHhhhcccCCC-CCceEEEecch
Q 004850 345 GRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI-SKASAHQRSGRAGRT-QPGKCFRLYTE 418 (727)
Q Consensus 345 ~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pi-s~~~~~qR~GRaGR~-~~G~~~~L~t~ 418 (727)
..++++|||.+|-||||.++..||.+|+ |. |..++.||+|||||. +.+..+-.+..
T Consensus 364 ~~~~~~st~AlelgidiG~ldavi~~g~------------------P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~ 421 (851)
T COG1205 364 ELLGVIATNALELGIDIGSLDAVIAYGY------------------PGVSVLSFRQRAGRAGRRGQESLVLVVLRS 421 (851)
T ss_pred CccEEecchhhhhceeehhhhhHhhcCC------------------CCchHHHHHHhhhhccCCCCCceEEEEeCC
Confidence 8999999999999999999999999999 88 999999999999999 56666655543
No 82
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.87 E-value=3.6e-21 Score=219.56 Aligned_cols=314 Identities=15% Similarity=0.131 Sum_probs=202.6
Q ss_pred cCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHh-cCccCCCccccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 63 KSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVL-EGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 63 ~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll-~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
--+.++.+|......+.+|. +...+||+|||..+..+++ +.. .. ....++.|+..++.+.......+.+.++
T Consensus 53 lg~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL--~G---~~V~VvTpt~~LA~qdae~~~~l~~~LG 125 (745)
T TIGR00963 53 LGMRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNAL--TG---KGVHVVTVNDYLAQRDAEWMGQVYRFLG 125 (745)
T ss_pred hCCCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHH--hC---CCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 34677899998888888887 6789999999998877764 332 11 2245667777777777676777777777
Q ss_pred ccccceeceeeeeccccccCccccccChHHH-HHHHhcc-------ccccCCeeEEeeccCcChhhHH------------
Q 004850 142 VTIGEEVGYSIRFEDCSSARTVLKYLTDGML-LREAMTD-------PLLERYKVIVLDEAHERTLATD------------ 201 (727)
Q Consensus 142 ~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l-~r~~~~~-------~ll~~~~~lIlDEaher~~~~d------------ 201 (727)
.+++..+|.....+........|.|.|+|++ .+.+..+ ..+.+..++|+||+|.-.++..
T Consensus 126 Lsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~ 205 (745)
T TIGR00963 126 LSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEK 205 (745)
T ss_pred CeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCC
Confidence 7777666643222222233568999999999 4444332 2368899999999984222110
Q ss_pred --HHHHHHHHHHHhC---------CCCEEEEEcCcc--cHHHH-----------------------Hhhh-c--------
Q 004850 202 --VLFGLLKEVLKNR---------PDLKLVVMSATL--EAEKF-----------------------QGYF-Y-------- 236 (727)
Q Consensus 202 --~ll~ll~~l~~~~---------~~~~vil~SATl--~~~~~-----------------------~~~f-~-------- 236 (727)
.+......+.+.. ...+.+.++..- ..+.+ +.++ .
T Consensus 206 ~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~ 285 (745)
T TIGR00963 206 STELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVR 285 (745)
T ss_pred chHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 0111111111110 011222222210 01110 0111 0
Q ss_pred CCCeeee--------CCCcc--------------------------------------------------------ceee
Q 004850 237 GAPLMKV--------PGRLH--------------------------------------------------------PVEI 252 (727)
Q Consensus 237 ~~p~i~v--------~g~~~--------------------------------------------------------~v~~ 252 (727)
+..++.| +|+.+ .+.+
T Consensus 286 d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~v 365 (745)
T TIGR00963 286 DGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEV 365 (745)
T ss_pred CCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCE
Confidence 0111111 11111 0000
Q ss_pred eeccC---------------CcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEE
Q 004850 253 FYTQE---------------PERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVP 317 (727)
Q Consensus 253 ~y~~~---------------~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~ 317 (727)
...+. ...++..+++..+...|. ...++|||+++.+.++.+++.|.+. ++....
T Consensus 366 v~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~--~grpvLV~t~si~~se~ls~~L~~~---------gi~~~~ 434 (745)
T TIGR00963 366 VVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHA--KGQPVLVGTTSVEKSELLSNLLKER---------GIPHNV 434 (745)
T ss_pred EEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHc---------CCCeEE
Confidence 00110 112344455555555553 4668999999999999999999874 678889
Q ss_pred ecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCC-------eEEEEcCCCccceeeccccCccccccc
Q 004850 318 LYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDG-------IVYVIDPGFAKQKVYNPRVRVESLLVS 390 (727)
Q Consensus 318 lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~-------V~~VId~g~~k~~~~~~~~~~~~l~~~ 390 (727)
|||. +.+|+..+..|..+ .-.|+||||+|+||+||+. ..|||++++
T Consensus 435 Lna~--q~~rEa~ii~~ag~-------~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~------------------ 487 (745)
T TIGR00963 435 LNAK--NHEREAEIIAQAGR-------KGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTER------------------ 487 (745)
T ss_pred eeCC--hHHHHHHHHHhcCC-------CceEEEEeccccCCcCCCccchhhcCCcEEEecCC------------------
Confidence 9998 78888888888777 6799999999999999998 559999999
Q ss_pred cccHhhHHhhhcccCCC-CCceEEEecchhhh
Q 004850 391 PISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (727)
Q Consensus 391 pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~ 421 (727)
|.|...|.||.|||||. .||.+..+.+.++.
T Consensus 488 p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 488 HESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred CCcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 99999999999999999 89999999987654
No 83
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.87 E-value=2.7e-21 Score=217.74 Aligned_cols=323 Identities=20% Similarity=0.236 Sum_probs=201.5
Q ss_pred cCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccc
Q 004850 63 KSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (727)
Q Consensus 63 ~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (727)
..+++-.+|.++....+ |++++|+.|||+|||-...-++++...+.+. ...+.++|+.|+..|-.......... .
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~--~KiVF~aP~~pLv~QQ~a~~~~~~~~--~ 133 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK--GKVVFLAPTRPLVNQQIACFSIYLIP--Y 133 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc--ceEEEeeCCchHHHHHHHHHhhccCc--c
Confidence 56888999999999888 9999999999999999888777776544331 22344566777665544221111111 1
Q ss_pred cccceeceeeeec--cccccCccccccChHHHHHHHhcccc--ccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCC-CC
Q 004850 143 TIGEEVGYSIRFE--DCSSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-DL 217 (727)
Q Consensus 143 ~~~~~vg~~~~~~--~~~~~~~~i~~lT~G~l~r~~~~~~l--l~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~-~~ 217 (727)
++-...|....-. .......++.++||-.+..-+..... |+.++++|+|||| |.......-.+++.++...- +-
T Consensus 134 ~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~~ 212 (746)
T KOG0354|consen 134 SVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQGN 212 (746)
T ss_pred cceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhccc
Confidence 1111111111000 01123567889999998877664332 7889999999999 55544444455555544332 34
Q ss_pred EEEEEcCccc--HHHHHhhhcC------CCeeeeC--------C-Cccceee----------------------------
Q 004850 218 KLVVMSATLE--AEKFQGYFYG------APLMKVP--------G-RLHPVEI---------------------------- 252 (727)
Q Consensus 218 ~vil~SATl~--~~~~~~~f~~------~p~i~v~--------g-~~~~v~~---------------------------- 252 (727)
|||.+|||.- .+...++..+ .+.+... . ...|++.
T Consensus 213 qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~ 292 (746)
T KOG0354|consen 213 QILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLI 292 (746)
T ss_pred cEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcc
Confidence 9999999982 3333333211 0000000 0 0000000
Q ss_pred -------eecc------------CCc------------------------------------------------------
Q 004850 253 -------FYTQ------------EPE------------------------------------------------------ 259 (727)
Q Consensus 253 -------~y~~------------~~~------------------------------------------------------ 259 (727)
.|.. .+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~ 372 (746)
T KOG0354|consen 293 EISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARL 372 (746)
T ss_pred ccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchh
Confidence 0000 000
Q ss_pred ---------------------ccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEe
Q 004850 260 ---------------------RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPL 318 (727)
Q Consensus 260 ---------------------~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~l 318 (727)
..+++.+...+.+.....+...++||+.+++.++.+..+|.+. ...+- .+.+-+..-
T Consensus 373 ~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~-~~~~i-r~~~fiGq~ 450 (746)
T KOG0354|consen 373 IRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQL-HELGI-KAEIFIGQG 450 (746)
T ss_pred hHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhh-hhccc-ccceeeecc
Confidence 0011111222222223345668999999999999999999862 22210 111111111
Q ss_pred c----CCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccH
Q 004850 319 Y----STLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISK 394 (727)
Q Consensus 319 h----~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~ 394 (727)
+ .+|++.+|+++++.|++| ..+|||||.|||=||||+.++.||=||. -.+.
T Consensus 451 ~s~~~~gmtqk~Q~evl~~Fr~G-------~~NvLVATSV~EEGLDI~ec~lVIcYd~------------------~snp 505 (746)
T KOG0354|consen 451 KSTQSTGMTQKEQKEVLDKFRDG-------EINVLVATSVAEEGLDIGECNLVICYDY------------------SSNP 505 (746)
T ss_pred ccccccccCHHHHHHHHHHHhCC-------CccEEEEecchhccCCcccccEEEEecC------------------CccH
Confidence 1 479999999999999999 8999999999999999999999999998 6677
Q ss_pred hhHHhhhcccCCCCCceEEEecchh
Q 004850 395 ASAHQRSGRAGRTQPGKCFRLYTEK 419 (727)
Q Consensus 395 ~~~~qR~GRaGR~~~G~~~~L~t~~ 419 (727)
-..+||.|| ||.+.|.|+.|++..
T Consensus 506 IrmIQrrGR-gRa~ns~~vll~t~~ 529 (746)
T KOG0354|consen 506 IRMVQRRGR-GRARNSKCVLLTTGS 529 (746)
T ss_pred HHHHHHhcc-ccccCCeEEEEEcch
Confidence 789999999 999999999999943
No 84
>PRK09694 helicase Cas3; Provisional
Probab=99.86 E-value=2.2e-20 Score=220.16 Aligned_cols=303 Identities=16% Similarity=0.137 Sum_probs=177.3
Q ss_pred CCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHh---c-
Q 004850 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEE---M- 140 (727)
Q Consensus 65 lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~---~- 140 (727)
..+++.|..+......+..++|.+|||||||.+.......-. .. . . .-.+++.-|++..+...++++.+. .
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~--~~-~-~-~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLI--DQ-G-L-ADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHH--Hh-C-C-CCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 467899998866655677899999999999998664432111 00 0 0 113555556655555666666431 1
Q ss_pred c-ccccceeceee---eec--------------c------------ccccCccccccChHHHHHHHhccc------cccC
Q 004850 141 D-VTIGEEVGYSI---RFE--------------D------------CSSARTVLKYLTDGMLLREAMTDP------LLER 184 (727)
Q Consensus 141 ~-~~~~~~vg~~~---~~~--------------~------------~~~~~~~i~~lT~G~l~r~~~~~~------ll~~ 184 (727)
. ..+.-.-|... .+. . ....-..+.++|.-+++...+... +-..
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 1 11111111110 000 0 000124677889988886555421 1123
Q ss_pred CeeEEeeccCcChhhHHHH-HHHHHHHHHhCCCCEEEEEcCcccHHH---HHhhhcC---------CCeeeeCCC----c
Q 004850 185 YKVIVLDEAHERTLATDVL-FGLLKEVLKNRPDLKLVVMSATLEAEK---FQGYFYG---------APLMKVPGR----L 247 (727)
Q Consensus 185 ~~~lIlDEaher~~~~d~l-l~ll~~l~~~~~~~~vil~SATl~~~~---~~~~f~~---------~p~i~v~g~----~ 247 (727)
-++|||||+|.-...+..+ ..+++. +... +.++|+||||++... +.+-+.+ .|.+...+. .
T Consensus 440 ~svvIiDEVHAyD~ym~~lL~~~L~~-l~~~-g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~ 517 (878)
T PRK09694 440 RSVLIVDEVHAYDAYMYGLLEAVLKA-QAQA-GGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQR 517 (878)
T ss_pred cCeEEEechhhCCHHHHHHHHHHHHH-HHhc-CCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccccccee
Confidence 4699999999755444443 334443 3333 678999999997533 2222221 122211110 0
Q ss_pred c-------------ceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeE
Q 004850 248 H-------------PVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVK 314 (727)
Q Consensus 248 ~-------------~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~ 314 (727)
+ .|.+.............++..+.+.. ...+.+|||+||.+.+..+++.|++.. + ....
T Consensus 518 ~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~---~---~~~~ 589 (878)
T PRK09694 518 FDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELN---N---TQVD 589 (878)
T ss_pred eeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhC---C---CCce
Confidence 0 01111110000011123333433322 346789999999999999999998641 1 2367
Q ss_pred EEEecCCCCHHHH----hhhcCCC-CCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCcccccc
Q 004850 315 VVPLYSTLPPAMQ----QKIFEPA-PPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLV 389 (727)
Q Consensus 315 v~~lh~~l~~~~r----~~~~~~~-~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~ 389 (727)
+..+||.+++.+| .++++.| ++| ..+..+|||||+|+|+|||| +++++|....
T Consensus 590 v~llHsrf~~~dR~~~E~~vl~~fgk~g----~r~~~~ILVaTQViE~GLDI-d~DvlItdla----------------- 647 (878)
T PRK09694 590 IDLFHARFTLNDRREKEQRVIENFGKNG----KRNQGRILVATQVVEQSLDL-DFDWLITQLC----------------- 647 (878)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcC----CcCCCeEEEECcchhheeec-CCCeEEECCC-----------------
Confidence 9999999999998 4567777 444 11125899999999999999 4788886433
Q ss_pred ccccHhhHHhhhcccCCC
Q 004850 390 SPISKASAHQRSGRAGRT 407 (727)
Q Consensus 390 ~pis~~~~~qR~GRaGR~ 407 (727)
| .++++||+||+||.
T Consensus 648 -P--idsLiQRaGR~~R~ 662 (878)
T PRK09694 648 -P--VDLLFQRLGRLHRH 662 (878)
T ss_pred -C--HHHHHHHHhccCCC
Confidence 6 47999999999998
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.84 E-value=3.9e-20 Score=216.25 Aligned_cols=312 Identities=16% Similarity=0.192 Sum_probs=188.0
Q ss_pred CchHHHHHHHHhhhcC---CEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccc
Q 004850 66 PVWQQKEEFLQVLKAN---QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (727)
Q Consensus 66 p~~~~q~~ii~~i~~g---~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (727)
.+++.|+++++.+.++ +++++.|+||||||..+..++..... . ..+.++++|+..+. .++.+++.+.++.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~--~--g~~vLvLvPt~~L~---~Q~~~~l~~~fg~ 216 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA--Q--GKQALVLVPEIALT---PQMLARFRARFGA 216 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH--c--CCeEEEEeCcHHHH---HHHHHHHHHHhCC
Confidence 4788999999999874 78999999999999988766543321 1 12345556555554 4445566555554
Q ss_pred cccceeceeee---ec---cccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHH----HHHHHHHHHH
Q 004850 143 TIGEEVGYSIR---FE---DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDV----LFGLLKEVLK 212 (727)
Q Consensus 143 ~~~~~vg~~~~---~~---~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~----ll~ll~~l~~ 212 (727)
.+....|.... .+ ........|.+.|++.+. ..+.++++||+||+|..+...+. -...+..+..
T Consensus 217 ~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra 290 (679)
T PRK05580 217 PVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRA 290 (679)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHh
Confidence 43333332111 11 111224578888887653 23788999999999964432221 0111122223
Q ss_pred hCCCCEEEEEcCcccHHHHHhhhc-CCCeeeeCCCc----cc-eeeeeccCCc-----ccHHHHHHHHHHHHhhcCCCCC
Q 004850 213 NRPDLKLVVMSATLEAEKFQGYFY-GAPLMKVPGRL----HP-VEIFYTQEPE-----RDYLEAAIRTVVQIHMCEPSGD 281 (727)
Q Consensus 213 ~~~~~~vil~SATl~~~~~~~~f~-~~p~i~v~g~~----~~-v~~~y~~~~~-----~~~~~~~~~~l~~i~~~~~~g~ 281 (727)
...+.++|++|||...+.+..... ....+..+.+. .| +++.-..... ......+++.+.+.. +...+
T Consensus 291 ~~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l--~~g~q 368 (679)
T PRK05580 291 KLENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRL--ERGEQ 368 (679)
T ss_pred hccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHH--HcCCe
Confidence 345889999999998776654322 22333333332 12 1111111000 001122333333322 22447
Q ss_pred EEEecCCH------------------------------------------------------------HHHHHHHHHHHH
Q 004850 282 ILVFLTGE------------------------------------------------------------EEIEDACRKITK 301 (727)
Q Consensus 282 iLVFl~~~------------------------------------------------------------~ei~~l~~~L~~ 301 (727)
+|||+|.+ ..++.+.+.|.+
T Consensus 369 vll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~ 448 (679)
T PRK05580 369 VLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAE 448 (679)
T ss_pred EEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHH
Confidence 88888752 134455555554
Q ss_pred HHhhcCCCCCCeEEEEecCCCCH--HHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEE--EcCCCccc-e
Q 004850 302 EITNMGDQVGPVKVVPLYSTLPP--AMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYV--IDPGFAKQ-K 376 (727)
Q Consensus 302 ~~~~~~~~~~~~~v~~lh~~l~~--~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~V--Id~g~~k~-~ 376 (727)
. .++..+..+|+++.+ ++++++++.|++| +..|||+|+++++|+|+|+|++| +|.|..-. .
T Consensus 449 ~-------fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g-------~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~p 514 (679)
T PRK05580 449 L-------FPEARILRIDRDTTRRKGALEQLLAQFARG-------EADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSP 514 (679)
T ss_pred h-------CCCCcEEEEeccccccchhHHHHHHHHhcC-------CCCEEEEChhhccCCCCCCcCEEEEEcCchhccCC
Confidence 3 257889999999874 5688999999998 88999999999999999999988 57665110 0
Q ss_pred eeccccCccccccccccHhhHHhhhcccCCC-CCceEEEe
Q 004850 377 VYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRL 415 (727)
Q Consensus 377 ~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L 415 (727)
.|... --.-..+.|++|||||. .+|.|+-.
T Consensus 515 dfra~---------Er~~~~l~q~~GRagR~~~~g~viiq 545 (679)
T PRK05580 515 DFRAS---------ERTFQLLTQVAGRAGRAEKPGEVLIQ 545 (679)
T ss_pred ccchH---------HHHHHHHHHHHhhccCCCCCCEEEEE
Confidence 11110 11246789999999997 88999853
No 86
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.84 E-value=1.9e-19 Score=183.15 Aligned_cols=301 Identities=19% Similarity=0.268 Sum_probs=202.8
Q ss_pred hcCCCchH--HHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHh
Q 004850 62 RKSLPVWQ--QKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 62 ~~~lp~~~--~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
.|.|.+.+ +-..++..+.+.+.++|.|-||||||..+-+.+-... .++..|+...||.--+..++.|+.+.
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al-------~~G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQAL-------NQGGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred ccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHH-------hcCCeEEEecCcccchHHHHHHHHHh
Confidence 34454432 2356778889999999999999999998765443222 12345777788888888999999876
Q ss_pred cc-ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCE
Q 004850 140 MD-VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLK 218 (727)
Q Consensus 140 ~~-~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~ 218 (727)
.. +.+....|.+. ..-...++++|..+++|.-. .++++|+||+|--+...|..+..--+-. +.++-.
T Consensus 168 F~~~~I~~Lyg~S~-----~~fr~plvVaTtHQLlrFk~------aFD~liIDEVDAFP~~~d~~L~~Av~~a-rk~~g~ 235 (441)
T COG4098 168 FSNCDIDLLYGDSD-----SYFRAPLVVATTHQLLRFKQ------AFDLLIIDEVDAFPFSDDQSLQYAVKKA-RKKEGA 235 (441)
T ss_pred hccCCeeeEecCCc-----hhccccEEEEehHHHHHHHh------hccEEEEeccccccccCCHHHHHHHHHh-hcccCc
Confidence 64 55544444331 12246788999999998643 5799999999877766666554432222 233678
Q ss_pred EEEEcCcccHHHHHhhhcC-CCeeeeCCCcc----ceeeeeccCCcc-----cHHHHHHHHHHHHhhcCCCCCEEEecCC
Q 004850 219 LVVMSATLEAEKFQGYFYG-APLMKVPGRLH----PVEIFYTQEPER-----DYLEAAIRTVVQIHMCEPSGDILVFLTG 288 (727)
Q Consensus 219 vil~SATl~~~~~~~~f~~-~p~i~v~g~~~----~v~~~y~~~~~~-----~~~~~~~~~l~~i~~~~~~g~iLVFl~~ 288 (727)
+|++|||-..+...+-..+ -..+.+|.|.| |+.-+....+-. +++...+...++-+. ....++|||+|+
T Consensus 236 ~IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~-~~~~P~liF~p~ 314 (441)
T COG4098 236 TIYLTATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQR-KTGRPVLIFFPE 314 (441)
T ss_pred eEEEecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHH-hcCCcEEEEecc
Confidence 8999999865444433322 23456665533 343333222222 222223333333332 235689999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEE-E
Q 004850 289 EEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVY-V 367 (727)
Q Consensus 289 ~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~-V 367 (727)
.+-.+.+++.|+..+ +...+...||.- ..|.+-.+.|++| +.+++++|.|.|||+|+|+|+. |
T Consensus 315 I~~~eq~a~~lk~~~-------~~~~i~~Vhs~d--~~R~EkV~~fR~G-------~~~lLiTTTILERGVTfp~vdV~V 378 (441)
T COG4098 315 IETMEQVAAALKKKL-------PKETIASVHSED--QHRKEKVEAFRDG-------KITLLITTTILERGVTFPNVDVFV 378 (441)
T ss_pred hHHHHHHHHHHHhhC-------CccceeeeeccC--ccHHHHHHHHHcC-------ceEEEEEeehhhcccccccceEEE
Confidence 999999999997653 456778888863 4567778899999 8999999999999999999954 6
Q ss_pred EcCCCccceeeccccCccccccccccHhhHHhhhcccCCC--CC-ceEEEe
Q 004850 368 IDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT--QP-GKCFRL 415 (727)
Q Consensus 368 Id~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~--~~-G~~~~L 415 (727)
+++.= + --+.++.+|-+||+||. +| |..+-|
T Consensus 379 lgaeh---~--------------vfTesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 379 LGAEH---R--------------VFTESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred ecCCc---c--------------cccHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 66432 2 24788899999999999 44 765544
No 87
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=4.8e-19 Score=203.56 Aligned_cols=300 Identities=15% Similarity=0.180 Sum_probs=175.7
Q ss_pred CCchHHHHHHHHhhhc-C--CEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 65 LPVWQQKEEFLQVLKA-N--QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 65 lp~~~~q~~ii~~i~~-g--~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
..+.++|.+.+..+.. | ..-+|+.|||+|||.+....+..- . ...++++++..+..|.. +.+.+...
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l---~----k~tLILvps~~Lv~QW~---~ef~~~~~ 323 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV---K----KSCLVLCTSAVSVEQWK---QQFKMWST 323 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh---C----CCEEEEeCcHHHHHHHH---HHHHHhcC
Confidence 4467889999988763 3 245778999999999876544321 1 12444444444333433 33333222
Q ss_pred c---cccceeceeeeeccccccCccccccChHHHHHHHhc--------ccc-ccCCeeEEeeccCcChhhHHHHHHHHHH
Q 004850 142 V---TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMT--------DPL-LERYKVIVLDEAHERTLATDVLFGLLKE 209 (727)
Q Consensus 142 ~---~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~--------~~l-l~~~~~lIlDEaher~~~~d~ll~ll~~ 209 (727)
. .++...|.. .........|.+.|...+...... ..+ -..+.+||+||+|. +-...+..++..
T Consensus 324 l~~~~I~~~tg~~---k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~--lpA~~fr~il~~ 398 (732)
T TIGR00603 324 IDDSQICRFTSDA---KERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHV--VPAAMFRRVLTI 398 (732)
T ss_pred CCCceEEEEecCc---ccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccc--ccHHHHHHHHHh
Confidence 1 111111211 000011245666777655321110 111 24688999999995 233333333333
Q ss_pred HHHhCCCCEEEEEcCccc--HHHHH--hhhcCCCeeee-------CCCccceeee--eccCCcc---cHHH---------
Q 004850 210 VLKNRPDLKLVVMSATLE--AEKFQ--GYFYGAPLMKV-------PGRLHPVEIF--YTQEPER---DYLE--------- 264 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~--~~~~~--~~f~~~p~i~v-------~g~~~~v~~~--y~~~~~~---~~~~--------- 264 (727)
+ .....+.+|||.. ..... .++.++.+... .|..-+++.. +.+.... +|+.
T Consensus 399 l----~a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l 474 (732)
T TIGR00603 399 V----QAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLL 474 (732)
T ss_pred c----CcCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHH
Confidence 2 2345799999983 11222 22223333322 2433333321 1111110 1110
Q ss_pred --------HHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCC
Q 004850 265 --------AAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPP 336 (727)
Q Consensus 265 --------~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~ 336 (727)
.++..++..|. ....++|||+...+.++.++..|. +..+||++++.+|.++++.|+.
T Consensus 475 ~~~np~K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L~--------------~~~I~G~ts~~ER~~il~~Fr~ 539 (732)
T TIGR00603 475 YVMNPNKFRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKLG--------------KPFIYGPTSQQERMQILQNFQH 539 (732)
T ss_pred hhhChHHHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHcC--------------CceEECCCCHHHHHHHHHHHHh
Confidence 01112333332 245689999999887777666541 2348999999999999999986
Q ss_pred CCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCcccccccc-ccHhhHHhhhcccCCCC-CceE--
Q 004850 337 PSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP-ISKASAHQRSGRAGRTQ-PGKC-- 412 (727)
Q Consensus 337 g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~p-is~~~~~qR~GRaGR~~-~G~~-- 412 (727)
+. ..++||+|+|+.+|||+|++++||+.+. | -|...|+||.||++|.. .|.+
T Consensus 540 ~~------~i~vLv~SkVgdeGIDlP~a~vvI~~s~------------------~~gS~~q~iQRlGRilR~~~~~~~~~ 595 (732)
T TIGR00603 540 NP------KVNTIFLSKVGDTSIDLPEANVLIQISS------------------HYGSRRQEAQRLGRILRAKKGSDAEE 595 (732)
T ss_pred CC------CccEEEEecccccccCCCCCCEEEEeCC------------------CCCCHHHHHHHhcccccCCCCCcccc
Confidence 41 5689999999999999999999999766 5 59999999999999995 4555
Q ss_pred -----EEecchhhhc
Q 004850 413 -----FRLYTEKSFN 422 (727)
Q Consensus 413 -----~~L~t~~~~~ 422 (727)
|+|++++..+
T Consensus 596 ~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 596 YNAFFYSLVSKDTQE 610 (732)
T ss_pred ccceEEEEecCCchH
Confidence 8998876543
No 88
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.81 E-value=4.5e-20 Score=167.70 Aligned_cols=104 Identities=40% Similarity=0.738 Sum_probs=80.2
Q ss_pred HHHHHHHHHcCCcccCCCC---------CCcchHHHHHHHHHHhcccceEEEcCCCcEEEeecCceEEECCCCCC-CCCC
Q 004850 593 QQLVRIMARFNLKLCSNDF---------NSRDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCL-DHKP 662 (727)
Q Consensus 593 ~ql~~~l~~~~~~~~~~~~---------~~~~~~~~i~~~l~~g~~~nva~~~~~~~y~~~~~~~~~~ihpsS~l-~~~~ 662 (727)
+||.++|++.|+...+... ....++..|++|||+|||||+|++++++.|.++.++..++|||+|++ ...|
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~~~~p 80 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLFKKPP 80 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTTTTT-
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCCCCEEEecCCCEEEEecCcccccccc
Confidence 5899999999986643211 01145688999999999999999998889999988889999999998 6679
Q ss_pred cEEEEeeeccchhhhcccccccCHHHHHhhcCcc
Q 004850 663 EWVIYNEYVLTSRNFIRTVTDVRGEWLIDIAPHY 696 (727)
Q Consensus 663 ~~vvy~e~~~t~~~~~~~~t~i~~~wl~~~~~~~ 696 (727)
+||||+|++.|+|.||++||+|+|+||.+++|+|
T Consensus 81 ~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~~~~ 114 (114)
T PF07717_consen 81 KWVVYHELVRTSKPYMRDVTAISPEWLLLFAPHY 114 (114)
T ss_dssp SEEEEEEEEESSSEEEEEEEE--HHHHHHH-TTT
T ss_pred ccchhhhheecCCcEEEECcCCCHHHHHHHcccC
Confidence 9999999999999999999999999999999986
No 89
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.80 E-value=4.8e-19 Score=208.29 Aligned_cols=318 Identities=15% Similarity=0.143 Sum_probs=211.4
Q ss_pred HHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHH
Q 004850 59 LEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (727)
Q Consensus 59 l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (727)
....+..-..+-|.++|.+++.|.++.+.-|||.|||..+.+|.+-.. + +-++..|+..........+.
T Consensus 257 ~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~---------g-itvVISPL~SLm~DQv~~L~- 325 (941)
T KOG0351|consen 257 KEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLG---------G-VTVVISPLISLMQDQVTHLS- 325 (941)
T ss_pred HHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccC---------C-ceEEeccHHHHHHHHHHhhh-
Confidence 334466666778999999999999999999999999997654432111 1 12333455443333333331
Q ss_pred hccccccceeceeee------ecccccc--CccccccChHHHHHHHhc---cccccC---CeeEEeeccCcChhhHHHH-
Q 004850 139 EMDVTIGEEVGYSIR------FEDCSSA--RTVLKYLTDGMLLREAMT---DPLLER---YKVIVLDEAHERTLATDVL- 203 (727)
Q Consensus 139 ~~~~~~~~~vg~~~~------~~~~~~~--~~~i~~lT~G~l~r~~~~---~~ll~~---~~~lIlDEaher~~~~d~l- 203 (727)
..++.....-+.... +...... .-++.|+||......... ...+.. ...+|+||||.-+.....+
T Consensus 326 ~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFR 405 (941)
T KOG0351|consen 326 KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFR 405 (941)
T ss_pred hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhccccc
Confidence 111111111111100 0011112 345668888876543211 112444 7889999999866665554
Q ss_pred --HHHHHHHHHhCCCCEEEEEcCcccHH---HHHhhhc-CCCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcC
Q 004850 204 --FGLLKEVLKNRPDLKLVVMSATLEAE---KFQGYFY-GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCE 277 (727)
Q Consensus 204 --l~ll~~l~~~~~~~~vil~SATl~~~---~~~~~f~-~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~ 277 (727)
..-+..+..+.++.-+|.+|||.... .+.+-++ ..|.+.-.... +-..+|...+..+ ...+...+..+....
T Consensus 406 p~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfn-R~NL~yeV~~k~~-~~~~~~~~~~~~~~~ 483 (941)
T KOG0351|consen 406 PSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFN-RPNLKYEVSPKTD-KDALLDILEESKLRH 483 (941)
T ss_pred HHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCC-CCCceEEEEeccC-ccchHHHHHHhhhcC
Confidence 33334445566788999999999643 3333332 22332222221 1122222222221 122333444455556
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCcccc
Q 004850 278 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357 (727)
Q Consensus 278 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~ 357 (727)
+.+.+||+|.++.+|+.+...|+.. ++....+|++|+..+|..|-..|-.+ +.+||+||=....
T Consensus 484 ~~~s~IIYC~sr~~ce~vs~~L~~~---------~~~a~~YHAGl~~~~R~~Vq~~w~~~-------~~~VivATVAFGM 547 (941)
T KOG0351|consen 484 PDQSGIIYCLSRKECEQVSAVLRSL---------GKSAAFYHAGLPPKERETVQKAWMSD-------KIRVIVATVAFGM 547 (941)
T ss_pred CCCCeEEEeCCcchHHHHHHHHHHh---------chhhHhhhcCCCHHHHHHHHHHHhcC-------CCeEEEEEeeccC
Confidence 7889999999999999999999875 58899999999999999999999988 8999999999999
Q ss_pred CcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhcc
Q 004850 358 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (727)
Q Consensus 358 gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~~ 423 (727)
|||.|||++||+|++ |-|.+.|.|-+|||||- .+-.|..||+-.++..
T Consensus 548 GIdK~DVR~ViH~~l------------------Pks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~ 596 (941)
T KOG0351|consen 548 GIDKPDVRFVIHYSL------------------PKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISE 596 (941)
T ss_pred CCCCCceeEEEECCC------------------chhHHHHHHhccccCcCCCcceeEEecchhHHHH
Confidence 999999999999999 99999999999999999 7899999999887654
No 90
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.80 E-value=4.5e-21 Score=213.64 Aligned_cols=451 Identities=8% Similarity=-0.152 Sum_probs=345.0
Q ss_pred HhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 61 KRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 61 ~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
+++-.|.+++.+.|++++.++.+.++-+.+||||+++.++.+.+.. ... ......-++.+++|+..+..++...+.++
T Consensus 401 etgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerv-a~e-r~e~~g~tvgy~vRf~Sa~prpyg~i~fc 478 (1282)
T KOG0921|consen 401 ETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERV-ANE-RGEEVGETCGYNVRFDSATPRPYGSIMFC 478 (1282)
T ss_pred cccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHH-HHh-hHHhhcccccccccccccccccccceeee
Confidence 4567899999999999999999999999999999999999998875 222 11223457889999999999999998888
Q ss_pred cccccceeceeeeeccccc-cCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEE
Q 004850 141 DVTIGEEVGYSIRFEDCSS-ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKL 219 (727)
Q Consensus 141 ~~~~~~~vg~~~~~~~~~~-~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~v 219 (727)
++.++...++..+++.... .+..+...+.+.+++.++++ +......+.||.|++++++|++...+..+ .++
T Consensus 479 tvgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~------p~~ 550 (1282)
T KOG0921|consen 479 TVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI------PDV 550 (1282)
T ss_pred ccchhhhhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc------cce
Confidence 8888888888766654433 34455578999999988876 56677788999999999999999888774 356
Q ss_pred EEEcCcccHHHHHhhhcCCCeeeeCCCccceeeee------------------------cc------------CCcccHH
Q 004850 220 VVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFY------------------------TQ------------EPERDYL 263 (727)
Q Consensus 220 il~SATl~~~~~~~~f~~~p~i~v~g~~~~v~~~y------------------------~~------------~~~~~~~ 263 (727)
.++++|+++..|..++..++...++++.++++.++ .. .......
T Consensus 551 ~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~ 630 (1282)
T KOG0921|consen 551 TVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLI 630 (1282)
T ss_pred eeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHH
Confidence 99999999999988888888888888765543221 00 0123344
Q ss_pred HHHHHHHHH------HhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCC
Q 004850 264 EAAIRTVVQ------IHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPP 337 (727)
Q Consensus 264 ~~~~~~l~~------i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g 337 (727)
+++...+.. |.--.+++..|+||+++.-+......+.+. ..++ .....+.+.|..+...++..+++....+
T Consensus 631 Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y-~ilp--~Hsq~~~~eqrkvf~~~p~gv~kii~st 707 (1282)
T KOG0921|consen 631 EALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKY-EILP--LHSQLTSQEQRKVFEPVPEGVTKIILST 707 (1282)
T ss_pred HHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhc-cccc--chhhcccHhhhhccCccccccccccccc
Confidence 444333221 112246889999999999888887777653 2222 1346788999999999999999999988
Q ss_pred CCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCCCceEEEecc
Q 004850 338 SKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYT 417 (727)
Q Consensus 338 ~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t 417 (727)
.+++...|+.+++.+++..+.+|++++-.+.+.+.....++...+.|-+.-.-.||.||++|...|.||.+.+
T Consensus 708 -------niaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~ 780 (1282)
T KOG0921|consen 708 -------NIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALE 780 (1282)
T ss_pred -------ceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHH
Confidence 8999999999999999999999999999999999999889988888999999999999999999999999999
Q ss_pred hhhhcccCCCCCCCcccccCchhhHHHHHHcCCCCcccc--cCCCCCcHHHHHHHHHHHHHcCCcCCCCCcchhhhhhcc
Q 004850 418 EKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF--DFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSE 495 (727)
Q Consensus 418 ~~~~~~~l~~~~~pei~r~~l~~~~L~lk~~~~~~~~~~--~~~~~P~~~~i~~a~~~L~~lgald~~~~lT~lG~~l~~ 495 (727)
...+.. |..++.|||.++.+...++.++.+-...+..+ +.+.+|+......+.-.+-..-+.+.+-.+|++|+....
T Consensus 781 ~~~t~e-m~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~l~iep~~~ 859 (1282)
T KOG0921|consen 781 DHGTAE-MFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPLGRMLARLPIEPRIG 859 (1282)
T ss_pred hcCcHh-hhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccchhhhhhhccCccccc
Confidence 988877 99999999999988877777766544444333 455666555544433333333333334457999999999
Q ss_pred CCCChhhhhHHhhcCCCCChHHHHHHHHHhcCCCCCC
Q 004850 496 FPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFV 532 (727)
Q Consensus 496 lPl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~ 532 (727)
.|+.|..|++...++.+-..+-..+++++--...+|.
T Consensus 860 k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~r 896 (1282)
T KOG0921|consen 860 KMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSR 896 (1282)
T ss_pred ceeeechhhccchhhhhhhcccccccccccccccccc
Confidence 9999999998887766544444444544433344444
No 91
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.79 E-value=8e-18 Score=191.70 Aligned_cols=483 Identities=18% Similarity=0.237 Sum_probs=292.1
Q ss_pred cCCCchHHHHHHHHhh-hcCCEEEEEcCCCChhhchhhHHHhcCccC--CC-ccccCceEEEEcccchhhhccHHHHHHH
Q 004850 63 KSLPVWQQKEEFLQVL-KANQVIILVGETGSGKTTQIPQFVLEGVDI--ET-PDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (727)
Q Consensus 63 ~~lp~~~~q~~ii~~i-~~g~~vii~g~TGSGKTt~~~~~ll~~~~~--~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (727)
++.....+|.++.|.+ ..+++.+|+||||||||-++.+-++....- .. .-......|+..-|....+....+.+.+
T Consensus 107 ~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~k 186 (1230)
T KOG0952|consen 107 SFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSK 186 (1230)
T ss_pred cHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhh
Confidence 3445567788887775 578899999999999999887665543211 00 0001133455556766667777777776
Q ss_pred hc---cccccceeceeeeeccccccCccccccChHHHHHHHhc-----cccccCCeeEEeeccCcChhhHHH-HHHHHHH
Q 004850 139 EM---DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMT-----DPLLERYKVIVLDEAHERTLATDV-LFGLLKE 209 (727)
Q Consensus 139 ~~---~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~-----~~ll~~~~~lIlDEaher~~~~d~-ll~ll~~ 209 (727)
.+ |..+++..|..- .......+++|.+.||... ++... ..+.+.+.+||+||+|.-.-+.+- +..++.+
T Consensus 187 kl~~~gi~v~ELTGD~q-l~~tei~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaR 264 (1230)
T KOG0952|consen 187 KLAPLGISVRELTGDTQ-LTKTEIADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVAR 264 (1230)
T ss_pred hcccccceEEEecCcch-hhHHHHHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHH
Confidence 54 345555555321 1111234678888787643 22221 235888999999999963333333 3333333
Q ss_pred HH----HhCCCCEEEEEcCcc-cHHHHHhhhcCC---CeeeeCCCc--cceeeeeccCCcc-------cHHHHHHHHHHH
Q 004850 210 VL----KNRPDLKLVVMSATL-EAEKFQGYFYGA---PLMKVPGRL--HPVEIFYTQEPER-------DYLEAAIRTVVQ 272 (727)
Q Consensus 210 l~----~~~~~~~vil~SATl-~~~~~~~~f~~~---p~i~v~g~~--~~v~~~y~~~~~~-------~~~~~~~~~l~~ 272 (727)
.+ .....++++.+|||+ +-+..++|+.-. .++...++. -|++..+...+.. +.-+.+...+.+
T Consensus 265 tlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e 344 (1230)
T KOG0952|consen 265 TLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVE 344 (1230)
T ss_pred HHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHH
Confidence 33 223378999999999 578899998753 345555543 3455555443322 111222333444
Q ss_pred HhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCC-----CC--C-------eEEEEecCCCCHHHHhhhcCCCCCCC
Q 004850 273 IHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQ-----VG--P-------VKVVPLYSTLPPAMQQKIFEPAPPPS 338 (727)
Q Consensus 273 i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~-----~~--~-------~~v~~lh~~l~~~~r~~~~~~~~~g~ 338 (727)
.++ .+..++|||+++++.-..++.|.+.....+.. .+ + .-....|++|..++|..+-+.|..|
T Consensus 345 ~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G- 421 (1230)
T KOG0952|consen 345 FLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEG- 421 (1230)
T ss_pred HHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcC-
Confidence 443 35589999999999999999998775443211 01 1 3356689999999999999999999
Q ss_pred CCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC---CCceEEEe
Q 004850 339 KEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRL 415 (727)
Q Consensus 339 ~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~---~~G~~~~L 415 (727)
..+|++||.-.+-|+..|.=-.+| -| ...||+..|.-. -.+.-+-+|--|||||. ..|..+-+
T Consensus 422 ------~i~vL~cTaTLAwGVNLPA~aViI-KG---T~~ydsskg~f~----dlgilDVlQifGRAGRPqFd~~G~giIi 487 (1230)
T KOG0952|consen 422 ------HIKVLCCTATLAWGVNLPAYAVII-KG---TQVYDSSKGSFV----DLGILDVLQIFGRAGRPQFDSSGEGIII 487 (1230)
T ss_pred ------CceEEEecceeeeccCCcceEEEe-cC---CcccccccCcee----eehHHHHHHHHhccCCCCCCCCceEEEE
Confidence 899999999999999999765555 22 467888876422 34566788999999999 46888877
Q ss_pred cchhh---hcc--------------cCCCCCCCcccc---cCchhhHHHHHH------cCCCCc---ccccCCCC-CcHH
Q 004850 416 YTEKS---FNN--------------DLQPQTYPEILR---SNLANTVLTLKK------LGIDDL---VHFDFMDP-PAPE 465 (727)
Q Consensus 416 ~t~~~---~~~--------------~l~~~~~pei~r---~~l~~~~L~lk~------~~~~~~---~~~~~~~~-P~~~ 465 (727)
-+.+. |.+ .+.+.-..||.- +++++.+=.|+. |+.+.. .....+.+ |-.+
T Consensus 488 Tt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~ 567 (1230)
T KOG0952|consen 488 TTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLE 567 (1230)
T ss_pred ecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHH
Confidence 66532 222 122223334432 233333333332 111100 00122222 3222
Q ss_pred -----HHHHHHHHHHHcC--CcCCCC---CcchhhhhhccCCCChhhhhHHhhcCC-CCChHHHHHHHHHhcCCCCCCCc
Q 004850 466 -----TLMRALEVLNYLG--ALDDDG---NLTEMGEKMSEFPLDPQMSKMLVESPK-YNCSNEILSISAMLSVPNCFVRP 534 (727)
Q Consensus 466 -----~i~~a~~~L~~lg--ald~~~---~lT~lG~~l~~lPl~p~~~k~ll~~~~-~~c~~~~l~i~a~ls~~~~f~~~ 534 (727)
-+..|+..|.... ..|.++ ..|++||.++.+.+.-.-=+.++.... +--.++++.++|+-+.=+-.-..
T Consensus 568 s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R 647 (1230)
T KOG0952|consen 568 SHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVR 647 (1230)
T ss_pred HHHHHHHHHHHHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhh
Confidence 2345555555543 235443 589999999999999999999998887 66788888887765432211112
Q ss_pred hHHHHHHHHHHHHh------CCCCCCHHHHHHHHHH
Q 004850 535 REAQKAADEAKARF------GHIDGDHLTLLNVYHA 564 (727)
Q Consensus 535 ~~~~~~~~~~~~~~------~~~~sD~l~~l~~~~~ 564 (727)
.++.++.+...... ....++.-.++..|..
T Consensus 648 ~eE~k~l~el~~~~~~~~~~~~~~gk~nil~q~~Is 683 (1230)
T KOG0952|consen 648 EEEKKELKELNEDSCEKYPFGGEKGKVNILLQAYIS 683 (1230)
T ss_pred hhhHHHHHHHHhcccccccccccchhHHHHHHhhhh
Confidence 23333333333222 2224666666666643
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.79 E-value=6e-19 Score=199.40 Aligned_cols=292 Identities=16% Similarity=0.188 Sum_probs=169.3
Q ss_pred EEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceecee---eeec---cccc
Q 004850 86 LVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYS---IRFE---DCSS 159 (727)
Q Consensus 86 i~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~---~~~~---~~~~ 159 (727)
+.|+||||||..+...+..-. .. +.+.++++|+ ...+.+.++++.+.++..+...-|.. .+.+ ....
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l--~~--g~~vLvlvP~---i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVL--AL--GKSVLVLVPE---IALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHH--Hc--CCeEEEEeCc---HHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc
Confidence 679999999998765543221 11 1223444444 44444556666655443332211110 0100 1112
Q ss_pred cCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHH----HHHHHHHHHhCCCCEEEEEcCcccHHHHHhhh
Q 004850 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVL----FGLLKEVLKNRPDLKLVVMSATLEAEKFQGYF 235 (727)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~l----l~ll~~l~~~~~~~~vil~SATl~~~~~~~~f 235 (727)
....|++.|.+.+. .-+.+.++||+||.|..+...+.. ...+..+.....+.++|++|||...+.+....
T Consensus 75 g~~~IVVGTrsalf------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~ 148 (505)
T TIGR00595 75 GEILVVIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAK 148 (505)
T ss_pred CCCCEEECChHHHc------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHh
Confidence 24567788877542 137889999999999654333211 01112223334588999999998777766543
Q ss_pred cCC-CeeeeCC----Cccc-eeeeeccCCc--ccHHHHHHHHHHHHhhcCCCCCEEEecCCHHH----------------
Q 004850 236 YGA-PLMKVPG----RLHP-VEIFYTQEPE--RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEE---------------- 291 (727)
Q Consensus 236 ~~~-p~i~v~g----~~~~-v~~~y~~~~~--~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~e---------------- 291 (727)
.+. ..+..+. ...| +++.-..... .-.-..+++.+.+... .++++|||+|++.-
T Consensus 149 ~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~--~g~qvLvflnrrGya~~~~C~~Cg~~~~C~ 226 (505)
T TIGR00595 149 QKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLA--AGEQSILFLNRRGYSKNLLCRSCGYILCCP 226 (505)
T ss_pred cCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHH--cCCcEEEEEeCCcCCCeeEhhhCcCccCCC
Confidence 321 2223322 1222 2221111111 0111223344433332 34589999876532
Q ss_pred --------------------------------------------HHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHH
Q 004850 292 --------------------------------------------IEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQ 327 (727)
Q Consensus 292 --------------------------------------------i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 327 (727)
++.+.+.|.+. .++..+..+|++++...+
T Consensus 227 ~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~-------fp~~~v~~~d~d~~~~~~ 299 (505)
T TIGR00595 227 NCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKL-------FPGARIARIDSDTTSRKG 299 (505)
T ss_pred CCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhh-------CCCCcEEEEecccccCcc
Confidence 45666666654 257889999999987766
Q ss_pred --hhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEE--EcCCCccceeeccccCccccccccccHhhHHhhhcc
Q 004850 328 --QKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYV--IDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGR 403 (727)
Q Consensus 328 --~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~V--Id~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GR 403 (727)
.++++.|++| +.+|||+|+++++|+|+|+|++| +|.|.. .+-|.... .--.-..+.|++||
T Consensus 300 ~~~~~l~~f~~g-------~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~---l~~pd~ra-----~E~~~~ll~q~~GR 364 (505)
T TIGR00595 300 AHEALLNQFANG-------KADILIGTQMIAKGHHFPNVTLVGVLDADSG---LHSPDFRA-----AERGFQLLTQVAGR 364 (505)
T ss_pred HHHHHHHHHhcC-------CCCEEEeCcccccCCCCCcccEEEEEcCccc---ccCcccch-----HHHHHHHHHHHHhc
Confidence 7899999998 88999999999999999999987 577651 01111000 01234678999999
Q ss_pred cCCC-CCceEEE
Q 004850 404 AGRT-QPGKCFR 414 (727)
Q Consensus 404 aGR~-~~G~~~~ 414 (727)
|||. .+|.++-
T Consensus 365 agR~~~~g~vii 376 (505)
T TIGR00595 365 AGRAEDPGQVII 376 (505)
T ss_pred cCCCCCCCEEEE
Confidence 9998 7898883
No 93
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.78 E-value=1e-18 Score=181.65 Aligned_cols=310 Identities=16% Similarity=0.122 Sum_probs=195.3
Q ss_pred HHHHHHH-HhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHH------hcc
Q 004850 69 QQKEEFL-QVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE------EMD 141 (727)
Q Consensus 69 ~~q~~ii-~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~------~~~ 141 (727)
..|++.+ -.+..+++|-++-|||+|||+.+-++-+-.. ++-|++ .|+...+....+.+.. .++
T Consensus 23 ~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~---------gITIV~-SPLiALIkDQiDHL~~LKVp~~SLN 92 (641)
T KOG0352|consen 23 RLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHG---------GITIVI-SPLIALIKDQIDHLKRLKVPCESLN 92 (641)
T ss_pred hHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhC---------CeEEEe-hHHHHHHHHHHHHHHhcCCchhHhc
Confidence 3455554 4567888999999999999998876655332 333433 3443333333333321 111
Q ss_pred ccccceeceeeeeccc--cccCccccccChHHH-----HHHHhccccccCCeeEEeeccCcChhhHHHH---HHHHHHHH
Q 004850 142 VTIGEEVGYSIRFEDC--SSARTVLKYLTDGML-----LREAMTDPLLERYKVIVLDEAHERTLATDVL---FGLLKEVL 211 (727)
Q Consensus 142 ~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l-----~r~~~~~~ll~~~~~lIlDEaher~~~~d~l---l~ll~~l~ 211 (727)
.++. .+.-.--+.+. ......+.|+||.+- +..+..-..-....++++||||.-+.....+ .--|-.+.
T Consensus 93 SKlS-t~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LR 171 (641)
T KOG0352|consen 93 SKLS-TVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLR 171 (641)
T ss_pred chhh-HHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHH
Confidence 1110 00000000111 223456668888764 3333322223456899999999755443221 11234455
Q ss_pred HhCCCCEEEEEcCcccHHHHHhhh----cCCCeeeeCCCccceeeeeccC---CcccHHHHHHHHHHHHhh---------
Q 004850 212 KNRPDLKLVVMSATLEAEKFQGYF----YGAPLMKVPGRLHPVEIFYTQE---PERDYLEAAIRTVVQIHM--------- 275 (727)
Q Consensus 212 ~~~~~~~vil~SATl~~~~~~~~f----~~~p~i~v~g~~~~v~~~y~~~---~~~~~~~~~~~~l~~i~~--------- 275 (727)
...++.--+.++||.+.+.-.+.| ...|+-......|.-..+|-.. ...|-+..+.+.-.+...
T Consensus 172 S~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~ 251 (641)
T KOG0352|consen 172 SVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNK 251 (641)
T ss_pred hhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCC
Confidence 567788899999999764433322 2344433322223333333211 111111222221111111
Q ss_pred cCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCcc
Q 004850 276 CEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIA 355 (727)
Q Consensus 276 ~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniA 355 (727)
+.-.|--||+|.|+++|+.++-.|... ++.+..+|++|...||..+-+.+-++ ...||+||+-.
T Consensus 252 K~~~GCGIVYCRTR~~cEq~AI~l~~~---------Gi~A~AYHAGLK~~ERTeVQe~WM~~-------~~PvI~AT~SF 315 (641)
T KOG0352|consen 252 KTFTGCGIVYCRTRNECEQVAIMLEIA---------GIPAMAYHAGLKKKERTEVQEKWMNN-------EIPVIAATVSF 315 (641)
T ss_pred CCcCcceEEEeccHHHHHHHHHHhhhc---------CcchHHHhcccccchhHHHHHHHhcC-------CCCEEEEEecc
Confidence 112477899999999999999988764 79999999999999999999999888 88999999999
Q ss_pred ccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhcc
Q 004850 356 ETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (727)
Q Consensus 356 e~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~~ 423 (727)
..|+|-|+|++||+.+. |.+.+-|-|-.|||||. .+..|=..|++++-+.
T Consensus 316 GMGVDKp~VRFViHW~~------------------~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 316 GMGVDKPDVRFVIHWSP------------------SQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred ccccCCcceeEEEecCc------------------hhhhHHHHHhccccccCCCccceeeeecccchHH
Confidence 99999999999999887 99999999999999999 6677877788776644
No 94
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.76 E-value=6e-19 Score=156.61 Aligned_cols=91 Identities=48% Similarity=0.843 Sum_probs=67.2
Q ss_pred HHHHHHHHcCCcCCCCCcchhhhhhccCCCChhhhhHHhhcCCCCChHHHHHHHHHhcCCCCCCCchHHHHHHH--HHHH
Q 004850 469 RALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAAD--EAKA 546 (727)
Q Consensus 469 ~a~~~L~~lgald~~~~lT~lG~~l~~lPl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~--~~~~ 546 (727)
.|++.|+.+||||++|+||++|+.|+.||++|++||||++|..++|.+++++|||+||++++|..+.+.++..+ ..+.
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~ 80 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKK 80 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999998754332222 2333
Q ss_pred H---------hCCCCCCHHHHH
Q 004850 547 R---------FGHIDGDHLTLL 559 (727)
Q Consensus 547 ~---------~~~~~sD~l~~l 559 (727)
+ +.+..|||+|+|
T Consensus 81 ~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 81 KFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp TT----------BTTBHHHHHH
T ss_pred HhhhhhcccccCCCCCCHHhcC
Confidence 3 467889999986
No 95
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=7.1e-17 Score=186.22 Aligned_cols=121 Identities=19% Similarity=0.230 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCC
Q 004850 262 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEG 341 (727)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~ 341 (727)
+..+++..+...| ....++|||+++.+..+.+++.|.+. ++....||+++...++..+.+.+++|
T Consensus 425 K~~al~~~i~~~~--~~g~pvLI~t~si~~se~ls~~L~~~---------gi~~~~Lna~~~~~Ea~ii~~ag~~g---- 489 (796)
T PRK12906 425 KFNAVVKEIKERH--AKGQPVLVGTVAIESSERLSHLLDEA---------GIPHAVLNAKNHAKEAEIIMNAGQRG---- 489 (796)
T ss_pred HHHHHHHHHHHHH--hCCCCEEEEeCcHHHHHHHHHHHHHC---------CCCeeEecCCcHHHHHHHHHhcCCCc----
Confidence 3444455554444 34668999999999999999999874 67888999999998888888888877
Q ss_pred CCCCcEEEEecCccccCccc---CCeE-----EEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceE
Q 004850 342 GPPGRKIVVSTNIAETSLTI---DGIV-----YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKC 412 (727)
Q Consensus 342 ~~~~~kvlvaTniAe~gitI---p~V~-----~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~ 412 (727)
.|+||||+|+||+|| ++|. |||++.+ |.|...+.||.|||||. .||.+
T Consensus 490 -----~VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~------------------pes~ri~~Ql~GRtGRqG~~G~s 546 (796)
T PRK12906 490 -----AVTIATNMAGRGTDIKLGPGVKELGGLAVIGTER------------------HESRRIDNQLRGRSGRQGDPGSS 546 (796)
T ss_pred -----eEEEEeccccCCCCCCCCcchhhhCCcEEEeeec------------------CCcHHHHHHHhhhhccCCCCcce
Confidence 599999999999999 5999 9999999 99999999999999999 89999
Q ss_pred EEecchhh
Q 004850 413 FRLYTEKS 420 (727)
Q Consensus 413 ~~L~t~~~ 420 (727)
..+++-++
T Consensus 547 ~~~~sleD 554 (796)
T PRK12906 547 RFYLSLED 554 (796)
T ss_pred EEEEeccc
Confidence 99888764
No 96
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.73 E-value=8.6e-17 Score=191.11 Aligned_cols=118 Identities=12% Similarity=0.143 Sum_probs=98.8
Q ss_pred HHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEE
Q 004850 270 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 349 (727)
Q Consensus 270 l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvl 349 (727)
+..+.......++|||+.+++.++.+.+.|+.. .++.+..+||+|++.+|.++++.|..+. ...+|+
T Consensus 484 L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~--------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~-----~~~~VL 550 (956)
T PRK04914 484 LIDFLKSHRSEKVLVICAKAATALQLEQALRER--------EGIRAAVFHEGMSIIERDRAAAYFADEE-----DGAQVL 550 (956)
T ss_pred HHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc--------cCeeEEEEECCCCHHHHHHHHHHHhcCC-----CCccEE
Confidence 444444445678999999999999999999653 3789999999999999999999998641 047899
Q ss_pred EecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCce--EEEecch
Q 004850 350 VSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGK--CFRLYTE 418 (727)
Q Consensus 350 vaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~--~~~L~t~ 418 (727)
|||+++++|+|++.+.+||+||+ |-+.+.|+||+||+||. +.|. +|.++.+
T Consensus 551 IsTdvgseGlNlq~a~~VInfDl------------------P~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~ 604 (956)
T PRK04914 551 LCSEIGSEGRNFQFASHLVLFDL------------------PFNPDLLEQRIGRLDRIGQKHDIQIHVPYLE 604 (956)
T ss_pred EechhhccCCCcccccEEEEecC------------------CCCHHHHHHHhcccccCCCCceEEEEEccCC
Confidence 99999999999999999999999 99999999999999999 5554 4444443
No 97
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.71 E-value=5.5e-16 Score=178.78 Aligned_cols=435 Identities=17% Similarity=0.194 Sum_probs=256.9
Q ss_pred CChHHHHHHHHhcCCCchHHHHHHHHhhh-cCCEEEEEcCCCChhhchhhHHHhcCccCCC-ccc---cCceEEEEcccc
Q 004850 51 YSQRYYEILEKRKSLPVWQQKEEFLQVLK-ANQVIILVGETGSGKTTQIPQFVLEGVDIET-PDR---RRKMMIACTQPR 125 (727)
Q Consensus 51 l~~~~~~~l~~~~~lp~~~~q~~ii~~i~-~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-~~~---~~~~~i~~t~p~ 125 (727)
++.+-..++. +......+|..+-++.. ..+++.++||||+|||-....-+++...-.. ..+ .....|+..-|.
T Consensus 296 lP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 3344444433 33336778999988855 4568999999999999765544443321110 000 001123333444
Q ss_pred hhhhccHHHHHHH---hccccccceeceeeeeccccccCccccccChHHHHHHHhc----cccccCCeeEEeeccCcChh
Q 004850 126 RVAAMSVSRRVAE---EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMT----DPLLERYKVIVLDEAHERTL 198 (727)
Q Consensus 126 ~~~~~~v~~~v~~---~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~----~~ll~~~~~lIlDEaher~~ 198 (727)
.-.+.+....+++ ..++++++..|-... .......+++.++||..- +++.. +...+-++.+|+||.|+..-
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l-~~~qieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLLhD 451 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQL-GKEQIEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLLHD 451 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccc-hhhhhhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhccc
Confidence 3333344333333 345666665553211 111224677888887754 23322 23467789999999997545
Q ss_pred hHHHHH-HHHHHHH----HhCCCCEEEEEcCccc-HHHHHhhhcCCC-eeeeC---CCccceeeeeccCCcccHHHH---
Q 004850 199 ATDVLF-GLLKEVL----KNRPDLKLVVMSATLE-AEKFQGYFYGAP-LMKVP---GRLHPVEIFYTQEPERDYLEA--- 265 (727)
Q Consensus 199 ~~d~ll-~ll~~l~----~~~~~~~vil~SATl~-~~~~~~~f~~~p-~i~v~---g~~~~v~~~y~~~~~~~~~~~--- 265 (727)
+.+-.+ .++.+.. ....+.+++-+|||++ -+..+.|+...+ -+..- -|.-|+++.|.....++.+..
T Consensus 452 dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qa 531 (1674)
T KOG0951|consen 452 DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQA 531 (1674)
T ss_pred ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHH
Confidence 555544 3332222 2334889999999994 455555544222 12222 244578888876654433221
Q ss_pred HHHHH-HHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhh-----------------c----C----C---CCCCeEEE
Q 004850 266 AIRTV-VQIHMCEPSGDILVFLTGEEEIEDACRKITKEITN-----------------M----G----D---QVGPVKVV 316 (727)
Q Consensus 266 ~~~~l-~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~-----------------~----~----~---~~~~~~v~ 316 (727)
.-+.. -++....+.++||||+.+++|.-..++.+++.... + + . +.-++.+.
T Consensus 532 mNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfa 611 (1674)
T KOG0951|consen 532 MNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFA 611 (1674)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccce
Confidence 11111 12333345689999999999999999999843211 0 0 0 01135688
Q ss_pred EecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhh
Q 004850 317 PLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKAS 396 (727)
Q Consensus 317 ~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~ 396 (727)
..|++|+..+|..+-+-|..| .++|++||--.|.|+..|.=+.+|- | ..+|||..|.-. +.|.-+
T Consensus 612 IHhAGl~R~dR~~~EdLf~~g-------~iqvlvstatlawgvnlpahtViik-g---tqvy~pekg~w~----elsp~d 676 (1674)
T KOG0951|consen 612 IHHAGLNRKDRELVEDLFADG-------HIQVLVSTATLAWGVNLPAHTVIIK-G---TQVYDPEKGRWT----ELSPLD 676 (1674)
T ss_pred eeccCCCcchHHHHHHHHhcC-------ceeEEEeehhhhhhcCCCcceEEec-C---ccccCcccCccc----cCCHHH
Confidence 899999999999999999999 8999999999999999998777773 3 368999988643 788899
Q ss_pred HHhhhcccCCCC-----CceEEEecchhhhccc-CCC-CCCCcccccCchhhHHHHHHcCCCCccc-ccCC---------
Q 004850 397 AHQRSGRAGRTQ-----PGKCFRLYTEKSFNND-LQP-QTYPEILRSNLANTVLTLKKLGIDDLVH-FDFM--------- 459 (727)
Q Consensus 397 ~~qR~GRaGR~~-----~G~~~~L~t~~~~~~~-l~~-~~~pei~r~~l~~~~L~lk~~~~~~~~~-~~~~--------- 459 (727)
-+||.|||||.+ .|+.++=+++-.|.-. |.. .++++-.-..|..-+-.=..+|+....+ .+|+
T Consensus 677 v~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm 756 (1674)
T KOG0951|consen 677 VMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRM 756 (1674)
T ss_pred HHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEee
Confidence 999999999983 4566655555444322 221 2223322222322222222233222110 0111
Q ss_pred --------------CCCc----HHHHHHHHHHHHHcCCcCCC---C--CcchhhhhhccCCCChhhhh
Q 004850 460 --------------DPPA----PETLMRALEVLNYLGALDDD---G--NLTEMGEKMSEFPLDPQMSK 504 (727)
Q Consensus 460 --------------~~P~----~~~i~~a~~~L~~lgald~~---~--~lT~lG~~l~~lPl~p~~~k 504 (727)
|++. .+-+..|.-.|...|.|--+ | +.|.+|+.-+.+.+.-.-..
T Consensus 757 ~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~ 824 (1674)
T KOG0951|consen 757 VRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMA 824 (1674)
T ss_pred ccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHH
Confidence 1121 13466788888888877433 2 57999999999887544333
No 98
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.70 E-value=3.3e-16 Score=160.63 Aligned_cols=344 Identities=17% Similarity=0.190 Sum_probs=210.7
Q ss_pred cCCCCCCCCcCCCCcccCCC--CCCCCChHHHHHHHHhcCC-CchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHh
Q 004850 27 TNGVGPGAMMNNNNSLINRW--NGKPYSQRYYEILEKRKSL-PVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVL 103 (727)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~f--~~~~l~~~~~~~l~~~~~l-p~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll 103 (727)
..+++.+...+..+.+...| +++|.+....+++++.-.| ...+.|.+.|++...|++++++-|||-|||..+.+|.+
T Consensus 52 ~~edsdag~~~eyd~spaawdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal 131 (695)
T KOG0353|consen 52 CLEDSDAGASNEYDRSPAAWDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPAL 131 (695)
T ss_pred hcccccccccccccCCccccccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHH
Confidence 34444333333334444334 5677788888888765322 34467899999999999999999999999997776654
Q ss_pred cCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccce-----eceeeeeccc-cc--cCccccccChHHHHHH
Q 004850 104 EGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEE-----VGYSIRFEDC-SS--ARTVLKYLTDGMLLRE 175 (727)
Q Consensus 104 ~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~-----vg~~~~~~~~-~~--~~~~i~~lT~G~l~r~ 175 (727)
-.. .-.++|+|.-.+....+-+. +.+++..... -....+.+.. .. ..-++.|.||..+-..
T Consensus 132 ~ad-------g~alvi~plislmedqil~l----kqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaks 200 (695)
T KOG0353|consen 132 CAD-------GFALVICPLISLMEDQILQL----KQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKS 200 (695)
T ss_pred hcC-------CceEeechhHHHHHHHHHHH----HHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHH
Confidence 321 11344444322211111111 1122110000 0000011111 11 1235668898876432
Q ss_pred --Hhc---ccc-ccCCeeEEeeccCcChhhHHH------HHHHHHHHHHhCCCCEEEEEcCcccHHHH---HhhhcCCCe
Q 004850 176 --AMT---DPL-LERYKVIVLDEAHERTLATDV------LFGLLKEVLKNRPDLKLVVMSATLEAEKF---QGYFYGAPL 240 (727)
Q Consensus 176 --~~~---~~l-l~~~~~lIlDEaher~~~~d~------ll~ll~~l~~~~~~~~vil~SATl~~~~~---~~~f~~~p~ 240 (727)
++. .++ ...++.+-+||+|.-+..... .+++++ ++.++..+|-++||.....+ .+.+.-...
T Consensus 201 k~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilk---rqf~~~~iigltatatn~vl~d~k~il~ie~~ 277 (695)
T KOG0353|consen 201 KKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILK---RQFKGAPIIGLTATATNHVLDDAKDILCIEAA 277 (695)
T ss_pred HHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHH---HhCCCCceeeeehhhhcchhhHHHHHHhHHhh
Confidence 221 222 566789999999875543322 444444 46778899999999732211 111110000
Q ss_pred ee-eCCCccc-e--eeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEE
Q 004850 241 MK-VPGRLHP-V--EIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVV 316 (727)
Q Consensus 241 i~-v~g~~~~-v--~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~ 316 (727)
+. -.|...| + ++.--+....+.++....+ |...-....-+|+|=++++++.++..|... ++..-
T Consensus 278 ~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~---i~~~f~gqsgiiyc~sq~d~ekva~alkn~---------gi~a~ 345 (695)
T KOG0353|consen 278 FTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKL---IKGDFAGQSGIIYCFSQKDCEKVAKALKNH---------GIHAG 345 (695)
T ss_pred heeecccCCCCceeEeeeCCCChHHHHHHHHHH---hccccCCCcceEEEeccccHHHHHHHHHhc---------Ccccc
Confidence 00 1111111 1 1111122223343333332 222222345689999999999999999874 78899
Q ss_pred EecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhh
Q 004850 317 PLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKAS 396 (727)
Q Consensus 317 ~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~ 396 (727)
.+|+.|.+.++..+-+.+..| ...|||||-....|||-|||++||+-.+ |.|.++
T Consensus 346 ~yha~lep~dks~~hq~w~a~-------eiqvivatvafgmgidkpdvrfvihhsl------------------~ksien 400 (695)
T KOG0353|consen 346 AYHANLEPEDKSGAHQGWIAG-------EIQVIVATVAFGMGIDKPDVRFVIHHSL------------------PKSIEN 400 (695)
T ss_pred ccccccCcccccccccccccc-------ceEEEEEEeeecccCCCCCeeEEEeccc------------------chhHHH
Confidence 999999999999999999998 8999999999999999999999999888 888888
Q ss_pred HHh-------------------------------------------hhcccCCC-CCceEEEecchhhh
Q 004850 397 AHQ-------------------------------------------RSGRAGRT-QPGKCFRLYTEKSF 421 (727)
Q Consensus 397 ~~q-------------------------------------------R~GRaGR~-~~G~~~~L~t~~~~ 421 (727)
|.| ..|||||. .+..|+..|.-.+.
T Consensus 401 yyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 401 YYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred HHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 888 78999999 88899988875443
No 99
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.68 E-value=5.1e-17 Score=141.65 Aligned_cols=90 Identities=56% Similarity=0.879 Sum_probs=81.4
Q ss_pred HHHHHHHHcCCcCCCCCcchhhhhhccCCCChhhhhHHhhcCCC-CChHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 004850 469 RALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKY-NCSNEILSISAMLSVPNCFVRPREAQKAADEAKAR 547 (727)
Q Consensus 469 ~a~~~L~~lgald~~~~lT~lG~~l~~lPl~p~~~k~ll~~~~~-~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~ 547 (727)
+|++.|+.+||||.+|+||++|+.|+.||++|++||||+.|..+ +|.+++++|+|++++.++|..+ .........+..
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~~ 79 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARRR 79 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999 8999999999999999998876 455667777888
Q ss_pred hCCC-CCCHHHHH
Q 004850 548 FGHI-DGDHLTLL 559 (727)
Q Consensus 548 ~~~~-~sD~l~~l 559 (727)
|... .|||++++
T Consensus 80 ~~~~~~~D~~~~l 92 (92)
T smart00847 80 FASGRESDHLTLL 92 (92)
T ss_pred ccCCCCCChhhhC
Confidence 8887 89999864
No 100
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.68 E-value=1.1e-15 Score=185.51 Aligned_cols=320 Identities=19% Similarity=0.240 Sum_probs=178.8
Q ss_pred CchHHHHHHHHhhh----c-CCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 66 PVWQQKEEFLQVLK----A-NQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 66 p~~~~q~~ii~~i~----~-g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
.+..+|.+++..+. + .+..+++.+||||||......+..- +......+.+.++....+..|+......+.-..
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L--~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRL--LKAKRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHH--HhcCccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 45778988887764 2 3567888999999995433222110 101011223334444444445444333221111
Q ss_pred cccccceeceeeeeccccccCccccccChHHHHHHHhc------cccccCCeeEEeeccCcChhhHH-------------
Q 004850 141 DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMT------DPLLERYKVIVLDEAHERTLATD------------- 201 (727)
Q Consensus 141 ~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~------~~ll~~~~~lIlDEaher~~~~d------------- 201 (727)
........+...-.+........|.++|-..+.+.+.. ...+..+++||+|||| |+...+
T Consensus 491 ~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 491 DQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred ccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccchh
Confidence 10111111110000111123467777877766554321 1236789999999999 553211
Q ss_pred -HHHHHHHHHHHhCCCCEEEEEcCcccHHHHHhhhcCCCeeee-------CCCcc----ceeee---------eccC---
Q 004850 202 -VLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKV-------PGRLH----PVEIF---------YTQE--- 257 (727)
Q Consensus 202 -~ll~ll~~l~~~~~~~~vil~SATl~~~~~~~~f~~~p~i~v-------~g~~~----~v~~~---------y~~~--- 257 (727)
......+.++.. .+...|.+|||.... ..++|+ .|+... .|.+- |+.+. |...
T Consensus 570 ~~~~~~yr~iL~y-FdA~~IGLTATP~r~-t~~~FG-~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~ 646 (1123)
T PRK11448 570 LDYVSKYRRVLDY-FDAVKIGLTATPALH-TTEIFG-EPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEV 646 (1123)
T ss_pred hhHHHHHHHHHhh-cCccEEEEecCCccc-hhHHhC-CeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchh
Confidence 012333444432 356789999998532 234554 233211 12111 11100 0000
Q ss_pred ---------------Ccc-cH--------------HHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcC
Q 004850 258 ---------------PER-DY--------------LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMG 307 (727)
Q Consensus 258 ---------------~~~-~~--------------~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~ 307 (727)
+.. ++ ....+..+.+......++++|||+.+.+.++.+++.|.+......
T Consensus 647 ~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~ 726 (1123)
T PRK11448 647 EVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKY 726 (1123)
T ss_pred hhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhc
Confidence 000 00 001112222222223458999999999999999999887543221
Q ss_pred CCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCcccc
Q 004850 308 DQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESL 387 (727)
Q Consensus 308 ~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l 387 (727)
.......+..+||+.+ ++..+++.|+++. ..+|+|++|++.||+|+|.|.+||-...
T Consensus 727 ~~~~~~~v~~itg~~~--~~~~li~~Fk~~~------~p~IlVsvdmL~TG~DvP~v~~vVf~rp--------------- 783 (1123)
T PRK11448 727 GQVEDDAVIKITGSID--KPDQLIRRFKNER------LPNIVVTVDLLTTGIDVPSICNLVFLRR--------------- 783 (1123)
T ss_pred CCcCccceEEEeCCcc--chHHHHHHHhCCC------CCeEEEEecccccCCCcccccEEEEecC---------------
Confidence 1112335667899876 4567889998761 2379999999999999999999998776
Q ss_pred ccccccHhhHHhhhcccCCCCC--ce-EEEecc
Q 004850 388 LVSPISKASAHQRSGRAGRTQP--GK-CFRLYT 417 (727)
Q Consensus 388 ~~~pis~~~~~qR~GRaGR~~~--G~-~~~L~t 417 (727)
+-|...|.|++||+.|..+ |+ ++.+|+
T Consensus 784 ---vkS~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 784 ---VRSRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred ---CCCHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 7899999999999999977 44 566655
No 101
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.65 E-value=1.8e-15 Score=177.37 Aligned_cols=326 Identities=18% Similarity=0.207 Sum_probs=214.2
Q ss_pred CCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccc
Q 004850 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (727)
Q Consensus 65 lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (727)
..+.++|++.+.+|..|+-|++++|||||||..---.+.... .. +-.+..|.|.....-+-...+....+..
T Consensus 118 F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al--~~-----~qrviYTsPIKALsNQKyrdl~~~fgdv- 189 (1041)
T COG4581 118 FELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALAL--RD-----GQRVIYTSPIKALSNQKYRDLLAKFGDV- 189 (1041)
T ss_pred CCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHH--Hc-----CCceEeccchhhhhhhHHHHHHHHhhhh-
Confidence 356789999999999999999999999999974332221111 11 1125567776555555555555554422
Q ss_pred cceeceeeeeccccccCccccccChHHHHHHHhcc-ccccCCeeEEeeccCc-ChhhHHHHHHHHHHHHHhCCCCEEEEE
Q 004850 145 GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTD-PLLERYKVIVLDEAHE-RTLATDVLFGLLKEVLKNRPDLKLVVM 222 (727)
Q Consensus 145 ~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~-~ll~~~~~lIlDEahe-r~~~~d~ll~ll~~l~~~~~~~~vil~ 222 (727)
.+.+|.-.+ +-..+.+..+.++|+..+..++..+ ..+..+..||+||+|- +..+.+...+.+-.++ .++.++|++
T Consensus 190 ~~~vGL~TG-Dv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l--P~~v~~v~L 266 (1041)
T COG4581 190 ADMVGLMTG-DVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL--PDHVRFVFL 266 (1041)
T ss_pred hhhccceec-ceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhc--CCCCcEEEE
Confidence 344453322 2224456778889998888777776 4699999999999994 1233344555443332 337899999
Q ss_pred cCcc-cHHHHHhhhc-----CCCeeeeCCCccceeeeeccCC--------cccHH----HHHHHH---------------
Q 004850 223 SATL-EAEKFQGYFY-----GAPLMKVPGRLHPVEIFYTQEP--------ERDYL----EAAIRT--------------- 269 (727)
Q Consensus 223 SATl-~~~~~~~~f~-----~~p~i~v~g~~~~v~~~y~~~~--------~~~~~----~~~~~~--------------- 269 (727)
|||+ +++.|+.|+. ++.++..+-|.-|.+++|.... ..+.. ..+...
T Consensus 267 SATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~ 346 (1041)
T COG4581 267 SATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGD 346 (1041)
T ss_pred eCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccc
Confidence 9999 6899999986 3445556667778877775431 00000 000011
Q ss_pred -----------------------HHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHH---------------H----hhcC
Q 004850 270 -----------------------VVQIHMCEPSGDILVFLTGEEEIEDACRKITKE---------------I----TNMG 307 (727)
Q Consensus 270 -----------------------l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~---------------~----~~~~ 307 (727)
+........--++++|+=++.+|+..+..+... + ..+.
T Consensus 347 ~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~ 426 (1041)
T COG4581 347 VGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLA 426 (1041)
T ss_pred cccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcC
Confidence 111111123347999999999999988877521 0 1111
Q ss_pred CCCCCe-------------EEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCcc
Q 004850 308 DQVGPV-------------KVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAK 374 (727)
Q Consensus 308 ~~~~~~-------------~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k 374 (727)
...-++ -+...|++|=+..+..+-.-|..| -.||++||...+-||..| .+.||=+++.|
T Consensus 427 ~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~G-------LvkvvFaTeT~s~GiNmP-artvv~~~l~K 498 (1041)
T COG4581 427 EEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEG-------LVKVVFATETFAIGINMP-ARTVVFTSLSK 498 (1041)
T ss_pred hhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhcc-------ceeEEeehhhhhhhcCCc-ccceeeeeeEE
Confidence 110001 134689999999999988888888 899999999999999999 45555566644
Q ss_pred ceeeccccCccccccccccHhhHHhhhcccCCC---CCceEEEecch
Q 004850 375 QKVYNPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRLYTE 418 (727)
Q Consensus 375 ~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~---~~G~~~~L~t~ 418 (727)
||... ..|.+..+|.|.+|||||- ..|.++.+.+.
T Consensus 499 ---~dG~~------~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 499 ---FDGNG------HRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred ---ecCCc------eeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 44222 2299999999999999998 46999988553
No 102
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.63 E-value=1.3e-14 Score=162.20 Aligned_cols=288 Identities=20% Similarity=0.205 Sum_probs=181.4
Q ss_pred cCCCchHHHHHHHHhhhc----CCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHH
Q 004850 63 KSLPVWQQKEEFLQVLKA----NQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (727)
Q Consensus 63 ~~lp~~~~q~~ii~~i~~----g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (727)
....+.++|++++.++.. ++..+++.|||+|||......+-.-. ...++++++.++..|.. +.+..
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~-------~~~Lvlv~~~~L~~Qw~---~~~~~ 102 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK-------RSTLVLVPTKELLDQWA---EALKK 102 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc-------CCEEEEECcHHHHHHHH---HHHHH
Confidence 345678899999999988 88899999999999998887665432 11455666666655543 44444
Q ss_pred hcccc--ccceeceeeeeccccccC-ccccccChHHHHHH-HhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhC
Q 004850 139 EMDVT--IGEEVGYSIRFEDCSSAR-TVLKYLTDGMLLRE-AMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR 214 (727)
Q Consensus 139 ~~~~~--~~~~vg~~~~~~~~~~~~-~~i~~lT~G~l~r~-~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~ 214 (727)
..... +|. .|.. ..... ..+.+.|--.+.+. .+......++++||+||+|.-. .+....++..+....
T Consensus 103 ~~~~~~~~g~-~~~~-----~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~--a~~~~~~~~~~~~~~ 174 (442)
T COG1061 103 FLLLNDEIGI-YGGG-----EKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLP--APSYRRILELLSAAY 174 (442)
T ss_pred hcCCccccce-ecCc-----eeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCC--cHHHHHHHHhhhccc
Confidence 43322 111 1111 11111 34666666666554 3333334579999999999633 333333333333222
Q ss_pred CCCEEEEEcCccc------HHHHHhhhcCCCeeeeC-------CCccceeeeeccCC-----cccHH-------------
Q 004850 215 PDLKLVVMSATLE------AEKFQGYFYGAPLMKVP-------GRLHPVEIFYTQEP-----ERDYL------------- 263 (727)
Q Consensus 215 ~~~~vil~SATl~------~~~~~~~f~~~p~i~v~-------g~~~~v~~~y~~~~-----~~~~~------------- 263 (727)
+ ++-+|||.+ ...+..+++ ..+..+. |..-|+........ ...+.
T Consensus 175 ~---~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~ 250 (442)
T COG1061 175 P---RLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRAR 250 (442)
T ss_pred c---eeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhh
Confidence 1 899999963 122223332 1222221 32223322221110 00000
Q ss_pred ----------------HHHHHHHHHHhhcC-CCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHH
Q 004850 264 ----------------EAAIRTVVQIHMCE-PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAM 326 (727)
Q Consensus 264 ----------------~~~~~~l~~i~~~~-~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 326 (727)
...+..+..+.... ...+++||+........++..+.. ++. +..+.|..+..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~---------~~~-~~~it~~t~~~e 320 (442)
T COG1061 251 GTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLA---------PGI-VEAITGETPKEE 320 (442)
T ss_pred hhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcC---------CCc-eEEEECCCCHHH
Confidence 00011111121111 355899999999999998888864 244 888999999999
Q ss_pred HhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCC
Q 004850 327 QQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGR 406 (727)
Q Consensus 327 r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR 406 (727)
|..+++.|+.| ..++|+++.|+.-|+|+|++.++|-..- ..|...|.||+||.=|
T Consensus 321 R~~il~~fr~g-------~~~~lv~~~vl~EGvDiP~~~~~i~~~~------------------t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 321 REAILERFRTG-------GIKVLVTVKVLDEGVDIPDADVLIILRP------------------TGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHHHHHHHcC-------CCCEEEEeeeccceecCCCCcEEEEeCC------------------CCcHHHHHHHhhhhcc
Confidence 99999999998 7899999999999999999999997554 6789999999999999
Q ss_pred C
Q 004850 407 T 407 (727)
Q Consensus 407 ~ 407 (727)
.
T Consensus 376 ~ 376 (442)
T COG1061 376 P 376 (442)
T ss_pred C
Confidence 5
No 103
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.62 E-value=1.8e-15 Score=166.92 Aligned_cols=321 Identities=17% Similarity=0.207 Sum_probs=210.2
Q ss_pred chHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccc
Q 004850 67 VWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGE 146 (727)
Q Consensus 67 ~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~ 146 (727)
+.+.|...|..+..++-|.+.|.|-+|||...--.+.... .. .-.++.|.|-....-+-++.+..+++ .+|-
T Consensus 130 LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sL--r~-----kQRVIYTSPIKALSNQKYREl~~EF~-DVGL 201 (1041)
T KOG0948|consen 130 LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSL--RE-----KQRVIYTSPIKALSNQKYRELLEEFK-DVGL 201 (1041)
T ss_pred cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHH--Hh-----cCeEEeeChhhhhcchhHHHHHHHhc-ccce
Confidence 5678999999999999999999999999975443332222 11 12366777765544455555655553 2333
Q ss_pred eeceeeeeccccccCccccccChHHHHHHHhccc-cccCCeeEEeeccCc-ChhhHHHHHHHHHHHHHhCCCCEEEEEcC
Q 004850 147 EVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHE-RTLATDVLFGLLKEVLKNRPDLKLVVMSA 224 (727)
Q Consensus 147 ~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~-ll~~~~~lIlDEahe-r~~~~d~ll~ll~~l~~~~~~~~vil~SA 224 (727)
..|.. ..+++....++|+.+|..++-... .+..+.++|+||+|= |.-+.+..++---.+ ..++.+.+++||
T Consensus 202 MTGDV-----TInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIl--lP~~vr~VFLSA 274 (1041)
T KOG0948|consen 202 MTGDV-----TINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIIL--LPDNVRFVFLSA 274 (1041)
T ss_pred eecce-----eeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEe--ccccceEEEEec
Confidence 33321 234556667899999888776655 599999999999992 223333333221112 234789999999
Q ss_pred cc-cHHHHHhhhc-----CCCeeeeCCCccceeeeeccC---------C-----cccHHHHHHHHHH-------------
Q 004850 225 TL-EAEKFQGYFY-----GAPLMKVPGRLHPVEIFYTQE---------P-----ERDYLEAAIRTVV------------- 271 (727)
Q Consensus 225 Tl-~~~~~~~~f~-----~~p~i~v~g~~~~v~~~y~~~---------~-----~~~~~~~~~~~l~------------- 271 (727)
|+ ++..|++|.- .|.++...-|..|+.+|..+. . ..+.+..++..+.
T Consensus 275 TiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~ 354 (1041)
T KOG0948|consen 275 TIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANK 354 (1041)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccccccc
Confidence 99 5888998863 355666666777877762221 0 0111222222111
Q ss_pred ---------------------HHhhcCCCCCEEEecCCHHHHHHHHHHHHHHH------------------hhcCCC---
Q 004850 272 ---------------------QIHMCEPSGDILVFLTGEEEIEDACRKITKEI------------------TNMGDQ--- 309 (727)
Q Consensus 272 ---------------------~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~------------------~~~~~~--- 309 (727)
.........+++||.=+++||+..+-.+.+.- ..+...
T Consensus 355 k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~ 434 (1041)
T KOG0948|consen 355 KGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRE 434 (1041)
T ss_pred ccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhcc
Confidence 11111234589999999999999887775421 111111
Q ss_pred CCC---------eEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeecc
Q 004850 310 VGP---------VKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNP 380 (727)
Q Consensus 310 ~~~---------~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~ 380 (727)
.|. --+...||+|-+--.+-+---|..| -.||++||.-.+-||+.|.=+.|. ...+.||.
T Consensus 435 LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEG-------LvKvLFATETFsiGLNMPAkTVvF----T~~rKfDG 503 (1041)
T KOG0948|consen 435 LPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEG-------LVKVLFATETFSIGLNMPAKTVVF----TAVRKFDG 503 (1041)
T ss_pred chHHHHHHHHHHhccccccccchHHHHHHHHHHHhcc-------HHHHHHhhhhhhhccCCcceeEEE----eeccccCC
Confidence 011 1256689998877766665557788 899999999999999999766665 23345655
Q ss_pred ccCccccccccccHhhHHhhhcccCCC---CCceEEEecchh
Q 004850 381 RVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRLYTEK 419 (727)
Q Consensus 381 ~~~~~~l~~~pis~~~~~qR~GRaGR~---~~G~~~~L~t~~ 419 (727)
... .|+|.-+|+|.+|||||- ..|+|+.+.++.
T Consensus 504 ~~f------RwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 504 KKF------RWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cce------eeecccceEEecccccccCCCCCceEEEEecCc
Confidence 432 399999999999999998 469999998863
No 104
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.62 E-value=5.6e-15 Score=164.88 Aligned_cols=305 Identities=17% Similarity=0.209 Sum_probs=195.0
Q ss_pred CCchHHHHHHHHhhhcCC------EEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHH
Q 004850 65 LPVWQQKEEFLQVLKANQ------VIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (727)
Q Consensus 65 lp~~~~q~~ii~~i~~g~------~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (727)
..+|..|+..+..|...- .=.++|.-|||||......++...+- +.+...++||.-++.|-..-+..+..
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~----G~Q~ALMAPTEILA~QH~~~~~~~l~ 336 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA----GYQAALMAPTEILAEQHYESLRKWLE 336 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc----CCeeEEeccHHHHHHHHHHHHHHHhh
Confidence 356788888887775431 23579999999998766555443211 12234466776666665555555555
Q ss_pred hccccccceeceee------eeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHH
Q 004850 139 EMDVTIGEEVGYSI------RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLK 212 (727)
Q Consensus 139 ~~~~~~~~~vg~~~------~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~ 212 (727)
..+..++-..|-.. ..+...+....+++.|.-.++. ...+.+..++|+||=|.=-... =..+..
T Consensus 337 ~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd----~V~F~~LgLVIiDEQHRFGV~Q------R~~L~~ 406 (677)
T COG1200 337 PLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD----KVEFHNLGLVIIDEQHRFGVHQ------RLALRE 406 (677)
T ss_pred hcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc----ceeecceeEEEEeccccccHHH------HHHHHH
Confidence 55655555444221 1112223345666777654432 2348899999999988411111 111222
Q ss_pred hCC-CCEEEEEcCcccHHHHH-hhhcCCCee---eeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecC
Q 004850 213 NRP-DLKLVVMSATLEAEKFQ-GYFYGAPLM---KVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLT 287 (727)
Q Consensus 213 ~~~-~~~vil~SATl~~~~~~-~~f~~~p~i---~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~ 287 (727)
+-. ..-+++||||.=+..++ ..|++-.+- ..|.-..||..+.......+. .++.+..-.. .+..+-|-||
T Consensus 407 KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~---v~e~i~~ei~--~GrQaY~VcP 481 (677)
T COG1200 407 KGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPE---VYERIREEIA--KGRQAYVVCP 481 (677)
T ss_pred hCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHH---HHHHHHHHHH--cCCEEEEEec
Confidence 322 35799999997554444 445554333 233333689988887654443 2333333332 3456778888
Q ss_pred CHHHHH--------HHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCc
Q 004850 288 GEEEIE--------DACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSL 359 (727)
Q Consensus 288 ~~~ei~--------~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gi 359 (727)
=.+|-+ .+++.|... .+++.+.-+||.|+.++++++++.|++| ..+|+|||.|-|-||
T Consensus 482 LIeESE~l~l~~a~~~~~~L~~~-------~~~~~vgL~HGrm~~~eKd~vM~~Fk~~-------e~~ILVaTTVIEVGV 547 (677)
T COG1200 482 LIEESEKLELQAAEELYEELKSF-------LPELKVGLVHGRMKPAEKDAVMEAFKEG-------EIDILVATTVIEVGV 547 (677)
T ss_pred cccccccchhhhHHHHHHHHHHH-------cccceeEEEecCCChHHHHHHHHHHHcC-------CCcEEEEeeEEEecc
Confidence 766544 444455432 3678899999999999999999999999 899999999999999
Q ss_pred ccCCeEEEEcCCCccceeeccc-cCccccccccccHhhHHhhhcccCCC-CCceEEEecchhh
Q 004850 360 TIDGIVYVIDPGFAKQKVYNPR-VRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (727)
Q Consensus 360 tIp~V~~VId~g~~k~~~~~~~-~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~ 420 (727)
|+||.++.|=. |+. .|+ ++.-|=.||.||. .+..|+.+|....
T Consensus 548 dVPnATvMVIe--------~AERFGL----------aQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 548 DVPNATVMVIE--------NAERFGL----------AQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred cCCCCeEEEEe--------chhhhhH----------HHHHHhccccCCCCcceEEEEEeCCCC
Confidence 99999875532 222 344 4455999999999 8899999998644
No 105
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=4.9e-15 Score=171.95 Aligned_cols=121 Identities=24% Similarity=0.216 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCC
Q 004850 262 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEG 341 (727)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~ 341 (727)
+..+++..+...|. ...++|||+++.+..+.+++.|.+. ++....||+.+.+.++..+.+.|++|
T Consensus 429 k~~av~~~i~~~~~--~g~PVLVgt~Sie~sE~ls~~L~~~---------gi~h~vLnak~~q~Ea~iia~Ag~~G---- 493 (896)
T PRK13104 429 KFQAIIEDVRECGV--RKQPVLVGTVSIEASEFLSQLLKKE---------NIKHQVLNAKFHEKEAQIIAEAGRPG---- 493 (896)
T ss_pred HHHHHHHHHHHHHh--CCCCEEEEeCcHHHHHHHHHHHHHc---------CCCeEeecCCCChHHHHHHHhCCCCC----
Confidence 34455566656554 4668999999999999999999874 78899999999999999999999987
Q ss_pred CCCCcEEEEecCccccCcccCC--------------------------------------eEEEEcCCCccceeeccccC
Q 004850 342 GPPGRKIVVSTNIAETSLTIDG--------------------------------------IVYVIDPGFAKQKVYNPRVR 383 (727)
Q Consensus 342 ~~~~~kvlvaTniAe~gitIp~--------------------------------------V~~VId~g~~k~~~~~~~~~ 383 (727)
.|+||||+|+||+||.= =-|||=+..
T Consensus 494 -----~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTer----------- 557 (896)
T PRK13104 494 -----AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSER----------- 557 (896)
T ss_pred -----cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeecc-----------
Confidence 49999999999999861 123333333
Q ss_pred ccccccccccHhhHHhhhcccCCC-CCceEEEecchhh
Q 004850 384 VESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (727)
Q Consensus 384 ~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~ 420 (727)
+-|.--=.|=.|||||. -||.+-.+.|-++
T Consensus 558 -------hesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 558 -------HESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred -------CchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 44544456889999999 8998776666433
No 106
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.60 E-value=2.7e-14 Score=168.88 Aligned_cols=309 Identities=21% Similarity=0.229 Sum_probs=168.3
Q ss_pred CchHHHHHHHHhhhc---CC-EEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 66 PVWQQKEEFLQVLKA---NQ-VIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 66 p~~~~q~~ii~~i~~---g~-~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
+.++.|..++..+.. .. .+++.+|||+|||++...+.+....-... ... .++.+-|.+..+-...+++....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~--~~~-r~i~vlP~~t~ie~~~~r~~~~~~ 271 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIK--LKS-RVIYVLPFRTIIEDMYRRAKEIFG 271 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcccc--ccc-eEEEEccHHHHHHHHHHHHHhhhc
Confidence 446667777766543 33 78899999999999888666544311110 112 244555666655555555543221
Q ss_pred c--cccc-eeceee----eec------cccccC----c--cccccChHHHHHHHhccc-----cccCCeeEEeeccCcCh
Q 004850 142 V--TIGE-EVGYSI----RFE------DCSSAR----T--VLKYLTDGMLLREAMTDP-----LLERYKVIVLDEAHERT 197 (727)
Q Consensus 142 ~--~~~~-~vg~~~----~~~------~~~~~~----~--~i~~lT~G~l~r~~~~~~-----ll~~~~~lIlDEaher~ 197 (727)
. ..+. ..|... ... .....+ . .+...++-+......... ..--.+++||||+|.-.
T Consensus 272 ~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~ 351 (733)
T COG1203 272 LFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYA 351 (733)
T ss_pred ccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhc
Confidence 1 1111 111100 000 000000 0 011122222211111000 02345789999988533
Q ss_pred hh--HHHHHHHHHHHHHhCCCCEEEEEcCcccH---HHHHhhhcCCCeeeeCCCccceeeee-ccCC-cccHHHH----H
Q 004850 198 LA--TDVLFGLLKEVLKNRPDLKLVVMSATLEA---EKFQGYFYGAPLMKVPGRLHPVEIFY-TQEP-ERDYLEA----A 266 (727)
Q Consensus 198 ~~--~d~ll~ll~~l~~~~~~~~vil~SATl~~---~~~~~~f~~~p~i~v~g~~~~v~~~y-~~~~-~~~~~~~----~ 266 (727)
-+ ..+++.++..+... +..+|+||||++. +.+..++.....+.......+....+ .... ..+.... .
T Consensus 352 ~~~~~~~l~~~i~~l~~~--g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 429 (733)
T COG1203 352 DETMLAALLALLEALAEA--GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEEL 429 (733)
T ss_pred ccchHHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhh
Confidence 33 22344444443333 8899999999975 34445544322222111100000000 0000 0000000 1
Q ss_pred HHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCC----CCCCCCCC
Q 004850 267 IRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPA----PPPSKEGG 342 (727)
Q Consensus 267 ~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~----~~g~~~~~ 342 (727)
...+ .......+++||-+||...+..+++.|+.. +. .++-|||.+....|.+..+.. ..+
T Consensus 430 ~~~~--~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~--------~~-~v~LlHSRf~~~dR~~ke~~l~~~~~~~----- 493 (733)
T COG1203 430 IELI--SEEVKEGKKVLVIVNTVDRAIELYEKLKEK--------GP-KVLLLHSRFTLKDREEKERELKKLFKQN----- 493 (733)
T ss_pred hhcc--hhhhccCCcEEEEEecHHHHHHHHHHHHhc--------CC-CEEEEecccchhhHHHHHHHHHHHHhcc-----
Confidence 1111 111234678999999999999999999875 22 799999999999998876622 122
Q ss_pred CCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCC---CceEEEecch
Q 004850 343 PPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTE 418 (727)
Q Consensus 343 ~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~---~G~~~~L~t~ 418 (727)
.-.|+|||.|.|-|+||+ .+++| +.+....+-+||+||.+|-+ +|..|-.-..
T Consensus 494 --~~~IvVaTQVIEagvDid-fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 494 --EGFIVVATQVIEAGVDID-FDVLI--------------------TELAPIDSLIQRAGRVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred --CCeEEEEeeEEEEEeccc-cCeee--------------------ecCCCHHHHHHHHHHHhhcccccCCceeEeecc
Confidence 458999999999999986 44444 33788899999999999996 4666655443
No 107
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=2.3e-14 Score=166.30 Aligned_cols=122 Identities=18% Similarity=0.169 Sum_probs=94.1
Q ss_pred cHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCC
Q 004850 261 DYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKE 340 (727)
Q Consensus 261 ~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~ 340 (727)
++..+++..+...|. ...++|||+++.+..+.+++.|.+. ++....|||. +.+|...+..|..+
T Consensus 414 ~K~~aI~~~I~~~~~--~grpVLIft~Si~~se~Ls~~L~~~---------gi~~~vLnak--q~eREa~Iia~Ag~--- 477 (830)
T PRK12904 414 EKFDAVVEDIKERHK--KGQPVLVGTVSIEKSELLSKLLKKA---------GIPHNVLNAK--NHEREAEIIAQAGR--- 477 (830)
T ss_pred HHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHC---------CCceEeccCc--hHHHHHHHHHhcCC---
Confidence 344555555544443 4568999999999999999999874 6888999995 78899999888877
Q ss_pred CCCCCcEEEEecCccccCcccCCe--------------------------------------EEEEcCCCccceeecccc
Q 004850 341 GGPPGRKIVVSTNIAETSLTIDGI--------------------------------------VYVIDPGFAKQKVYNPRV 382 (727)
Q Consensus 341 ~~~~~~kvlvaTniAe~gitIp~V--------------------------------------~~VId~g~~k~~~~~~~~ 382 (727)
...|+||||+|+||+||+== -|||=+..
T Consensus 478 ----~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTer---------- 543 (830)
T PRK12904 478 ----PGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTER---------- 543 (830)
T ss_pred ----CceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEeccc----------
Confidence 78999999999999999721 23443333
Q ss_pred CccccccccccHhhHHhhhcccCCC-CCceEEEecchhh
Q 004850 383 RVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (727)
Q Consensus 383 ~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~ 420 (727)
+-|.--=.|=.|||||. .||.+-.+.|-++
T Consensus 544 --------hesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 544 --------HESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred --------CchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 66666667899999999 8998877776443
No 108
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.59 E-value=1.6e-14 Score=167.54 Aligned_cols=128 Identities=19% Similarity=0.140 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCC
Q 004850 262 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEG 341 (727)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~ 341 (727)
.++.++..+.... .....+|||++++..++.+++.|.+. ++.+..+||++++.+|.+++..|+.|
T Consensus 427 qi~~Ll~eI~~~~--~~g~~vLIf~~tk~~ae~L~~~L~~~---------gi~~~~lh~~~~~~eR~~~l~~fr~G---- 491 (655)
T TIGR00631 427 QVDDLLSEIRQRV--ARNERVLVTTLTKKMAEDLTDYLKEL---------GIKVRYLHSEIDTLERVEIIRDLRLG---- 491 (655)
T ss_pred hHHHHHHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHhhh---------ccceeeeeCCCCHHHHHHHHHHHhcC----
Confidence 3444444443322 34568999999999999999999874 68899999999999999999999999
Q ss_pred CCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCCCceEEEecchhh
Q 004850 342 GPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKS 420 (727)
Q Consensus 342 ~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~~~ 420 (727)
...|+||||++++|+|+|+|++||.++-.+.- .|-+..+|+||+|||||..+|.|+.+++..+
T Consensus 492 ---~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG-------------~p~~~~~~iqriGRagR~~~G~vi~~~~~~~ 554 (655)
T TIGR00631 492 ---EFDVLVGINLLREGLDLPEVSLVAILDADKEG-------------FLRSERSLIQTIGRAARNVNGKVIMYADKIT 554 (655)
T ss_pred ---CceEEEEcChhcCCeeeCCCcEEEEeCccccc-------------CCCCHHHHHHHhcCCCCCCCCEEEEEEcCCC
Confidence 88999999999999999999999987621100 1889999999999999999999999988643
No 109
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.58 E-value=1e-14 Score=146.34 Aligned_cols=180 Identities=21% Similarity=0.197 Sum_probs=119.4
Q ss_pred CCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCC-ccccCceEEEEccc
Q 004850 46 WNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-PDRRRKMMIACTQP 124 (727)
Q Consensus 46 f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-~~~~~~~~i~~t~p 124 (727)
|+++++++.+.+.+...++..++++|.++++.+.+|+++++.+|||+|||..+..++++...... ....+.++++|+..
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 78899999999999999999999999999999999999999999999999987766665431110 11223444555555
Q ss_pred chhhhccHHHHHHHhccccccceeceeeeeccc--cccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcChhhHH
Q 004850 125 RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATD 201 (727)
Q Consensus 125 ~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~~~~d 201 (727)
+..+.....+.+....+..+....|.....+.. ...+..+.++|++.+.+.+..... +.+.+++|+||+|. ..+.+
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~-~~~~~ 159 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADR-MLDMG 159 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHH-hhccC
Confidence 544444444444443333333333322110110 112567889999999887766543 78899999999995 22222
Q ss_pred HHHHHHHHHHHh-CCCCEEEEEcCccc
Q 004850 202 VLFGLLKEVLKN-RPDLKLVVMSATLE 227 (727)
Q Consensus 202 ~ll~ll~~l~~~-~~~~~vil~SATl~ 227 (727)
+...+..+... .++.+++++|||++
T Consensus 160 -~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 160 -FEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred -hHHHHHHHHHhCCcccEEEEEeccCC
Confidence 22333333332 23789999999996
No 110
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.53 E-value=7.7e-14 Score=162.86 Aligned_cols=125 Identities=19% Similarity=0.146 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCC
Q 004850 263 LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGG 342 (727)
Q Consensus 263 ~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~ 342 (727)
++.++..+.... ....++|||++++..++.+++.|... ++.+..+||++++.+|..++..|+.|
T Consensus 432 ~~~L~~~L~~~~--~~g~~viIf~~t~~~ae~L~~~L~~~---------gi~~~~~h~~~~~~~R~~~l~~f~~g----- 495 (652)
T PRK05298 432 VDDLLSEIRKRV--AKGERVLVTTLTKRMAEDLTDYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLG----- 495 (652)
T ss_pred HHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHHHHHHhhc---------ceeEEEEECCCCHHHHHHHHHHHHcC-----
Confidence 344444444332 24568999999999999999999864 68999999999999999999999998
Q ss_pred CCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCCCceEEEecch
Q 004850 343 PPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTE 418 (727)
Q Consensus 343 ~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~ 418 (727)
...|+|||+++++|+|+|++++||+++.... | .|.+.++|+||+|||||.+.|.|+.+++.
T Consensus 496 --~i~vlV~t~~L~rGfdlp~v~lVii~d~eif-------G------~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 496 --EFDVLVGINLLREGLDIPEVSLVAILDADKE-------G------FLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred --CceEEEEeCHHhCCccccCCcEEEEeCCccc-------c------cCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 8899999999999999999999998775211 1 17789999999999999999999999984
No 111
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.52 E-value=2.6e-13 Score=159.58 Aligned_cols=296 Identities=16% Similarity=0.216 Sum_probs=191.3
Q ss_pred hHHHHHHHHhhh----cCC--EEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 68 WQQKEEFLQVLK----ANQ--VIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 68 ~~~q~~ii~~i~----~g~--~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
|+=|...|+.+. +++ +=+|||.-|=|||-......+... . + +..+++..|.-+.+.+-++++.+.+.
T Consensus 596 T~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV-~-~-----GKQVAvLVPTTlLA~QHy~tFkeRF~ 668 (1139)
T COG1197 596 TPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV-M-D-----GKQVAVLVPTTLLAQQHYETFKERFA 668 (1139)
T ss_pred CHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh-c-C-----CCeEEEEcccHHhHHHHHHHHHHHhc
Confidence 444555666554 333 457899999999997765554332 1 1 12233344444555555666654432
Q ss_pred ccccceeceeeeeccc----------cccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHH
Q 004850 142 VTIGEEVGYSIRFEDC----------SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVL 211 (727)
Q Consensus 142 ~~~~~~vg~~~~~~~~----------~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~ 211 (727)
...-.|+.-.||... ....-.|++.|.- ++..+.-+.+..+||+||=|.=-+. -.+.+|++
T Consensus 669 -~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~kdv~FkdLGLlIIDEEqRFGVk---~KEkLK~L- 739 (1139)
T COG1197 669 -GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLSKDVKFKDLGLLIIDEEQRFGVK---HKEKLKEL- 739 (1139)
T ss_pred -CCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhCCCcEEecCCeEEEechhhcCcc---HHHHHHHH-
Confidence 112223333333222 1233455666643 3344556899999999996631111 23444554
Q ss_pred HhCCCCEEEEEcCcccHHHHHhhh---cCCCeeeeC-CCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecC
Q 004850 212 KNRPDLKLVVMSATLEAEKFQGYF---YGAPLMKVP-GRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLT 287 (727)
Q Consensus 212 ~~~~~~~vil~SATl~~~~~~~~f---~~~p~i~v~-g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~ 287 (727)
+.+.-++-+|||.=+..+.--+ .+--+|..| ...+||..+..+....- + .+.+..-+ ...|.+-.-.|
T Consensus 740 --r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~-i---reAI~REl--~RgGQvfYv~N 811 (1139)
T COG1197 740 --RANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLL-I---REAILREL--LRGGQVFYVHN 811 (1139)
T ss_pred --hccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHH-H---HHHHHHHH--hcCCEEEEEec
Confidence 4478899999997332222111 122334433 35579999887644322 1 12222222 24788888889
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEE
Q 004850 288 GEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYV 367 (727)
Q Consensus 288 ~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~V 367 (727)
..++|+.+++.|+... |..++...||.|+..+-++++..|-+| ...|+|||.|-|+|||||++..+
T Consensus 812 rV~~Ie~~~~~L~~LV-------PEarI~vaHGQM~e~eLE~vM~~F~~g-------~~dVLv~TTIIEtGIDIPnANTi 877 (1139)
T COG1197 812 RVESIEKKAERLRELV-------PEARIAVAHGQMRERELEEVMLDFYNG-------EYDVLVCTTIIETGIDIPNANTI 877 (1139)
T ss_pred chhhHHHHHHHHHHhC-------CceEEEEeecCCCHHHHHHHHHHHHcC-------CCCEEEEeeeeecCcCCCCCceE
Confidence 9999999999999874 789999999999999999999999999 89999999999999999999655
Q ss_pred E--cCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhh
Q 004850 368 I--DPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (727)
Q Consensus 368 I--d~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~ 420 (727)
| +.|. .|+ ++.-|=.||.||. +.|.||-||....
T Consensus 878 IIe~AD~---------fGL----------sQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 878 IIERADK---------FGL----------AQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred EEecccc---------ccH----------HHHHHhccccCCccceEEEEEeecCcc
Confidence 5 3332 233 5556999999999 8899999998644
No 112
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=2.7e-14 Score=142.73 Aligned_cols=145 Identities=19% Similarity=0.279 Sum_probs=109.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCccccCceEEEEcccchhhhccHHHHHHHhcc----
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD---- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~---- 141 (727)
.+.+|++|+|+||+||||||++..+. +++.... .......++++++..++-.++.+++.-.+.
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~ 102 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRGK 102 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccC--CCCCCEEEEeccCcccchhhHHhhheehhhcccc
Confidence 46799999999999999999998542 2222111 112356789999999999999999843221
Q ss_pred ---------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 142 ---------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 142 ---------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
......||.. ...+..+..+|+|+.||+.++++++.+|++++||| ..+|.+....+.+.+.++
T Consensus 103 ~~~e~~~~a~~~L~~VgL~------~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~l 176 (248)
T COG1116 103 SKAEARERAKELLELVGLA------GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRL 176 (248)
T ss_pred chHhHHHHHHHHHHHcCCc------chhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHH
Confidence 2223344433 23467788999999999999999999999999999 566777777788888888
Q ss_pred HHhCCCCEEEEEcCcccHHH
Q 004850 211 LKNRPDLKLVVMSATLEAEK 230 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~~~~ 230 (727)
.++. +.+++++||+++...
T Consensus 177 w~~~-~~TvllVTHdi~EAv 195 (248)
T COG1116 177 WEET-RKTVLLVTHDVDEAV 195 (248)
T ss_pred HHhh-CCEEEEEeCCHHHHH
Confidence 7765 789999999996543
No 113
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.51 E-value=2e-13 Score=154.54 Aligned_cols=320 Identities=14% Similarity=0.181 Sum_probs=202.7
Q ss_pred CCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHH-hcCccCCCccccCceEEEEcccchhhhccHHHHHHHhcccc
Q 004850 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFV-LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (727)
Q Consensus 65 lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~l-l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (727)
..+...|++.+.++..|+-|.+.|+|-||||...--.+ +... + ....+.|.|.....-+-++.+.+-.+
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~---h-----~TR~iYTSPIKALSNQKfRDFk~tF~-- 365 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK---H-----MTRTIYTSPIKALSNQKFRDFKETFG-- 365 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh---h-----ccceEecchhhhhccchHHHHHHhcc--
Confidence 35678899999999999999999999999997543211 1111 1 11245666654333333333333322
Q ss_pred ccceeceeeeeccccccCccccccChHHHHHHHhccc-cccCCeeEEeeccCc-ChhhHHHHHHHHHHHHHhCCCCEEEE
Q 004850 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHE-RTLATDVLFGLLKEVLKNRPDLKLVV 221 (727)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~-ll~~~~~lIlDEahe-r~~~~d~ll~ll~~l~~~~~~~~vil 221 (727)
.|| -+..+-...+...+.+||+.+|..++-..+ ++++++.||+||+|= -..+.+...+-+-.++. +..++|+
T Consensus 366 ---Dvg-LlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP--~HV~~Il 439 (1248)
T KOG0947|consen 366 ---DVG-LLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLP--RHVNFIL 439 (1248)
T ss_pred ---ccc-eeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeecc--ccceEEE
Confidence 222 112222345667788999999988887766 589999999999983 11333444444433333 3789999
Q ss_pred EcCcc-cHHHHHhhhcCC---C--eeeeCCCccceeeeeccCCc------------------------------------
Q 004850 222 MSATL-EAEKFQGYFYGA---P--LMKVPGRLHPVEIFYTQEPE------------------------------------ 259 (727)
Q Consensus 222 ~SATl-~~~~~~~~f~~~---p--~i~v~g~~~~v~~~y~~~~~------------------------------------ 259 (727)
+|||. +...|++|.+.. . |+....|.-|++++......
T Consensus 440 LSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~ 519 (1248)
T KOG0947|consen 440 LSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSD 519 (1248)
T ss_pred EeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccccccc
Confidence 99999 578999998742 1 23333344555554321100
Q ss_pred ---------------------------ccHHH--HHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHH-------
Q 004850 260 ---------------------------RDYLE--AAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEI------- 303 (727)
Q Consensus 260 ---------------------------~~~~~--~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~------- 303 (727)
.+.-. .....+.+++ +..--+++||+=++..|+..++.|...-
T Consensus 520 ~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~-k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EK 598 (1248)
T KOG0947|consen 520 ARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLR-KKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEK 598 (1248)
T ss_pred ccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHh-hcccCceEEEEEccccHHHHHHHHhccCcccchhH
Confidence 00000 0112222222 2233479999999999999999996431
Q ss_pred -----------hhcC-CC--CCC---------eEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcc
Q 004850 304 -----------TNMG-DQ--VGP---------VKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLT 360 (727)
Q Consensus 304 -----------~~~~-~~--~~~---------~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~git 360 (727)
..+. .+ .|. --+...||++-+--..-+-.=|..| -.||++||.-.+.|++
T Consensus 599 seV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrG-------lVKVLFATETFAMGVN 671 (1248)
T KOG0947|consen 599 SEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRG-------LVKVLFATETFAMGVN 671 (1248)
T ss_pred HHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcC-------ceEEEeehhhhhhhcC
Confidence 0000 00 010 1367789999888877776778788 8999999999999999
Q ss_pred cCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC---CCceEEEecch
Q 004850 361 IDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRLYTE 418 (727)
Q Consensus 361 Ip~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~---~~G~~~~L~t~ 418 (727)
.|.-.+|+|+=. | .|-... .-...-+|.|.+|||||- ..|.++-+...
T Consensus 672 MPARtvVF~Sl~-K---hDG~ef------R~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 672 MPARTVVFSSLR-K---HDGNEF------RELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred CCceeEEeeehh-h---ccCcce------eecCChhHHhhhccccccccCcCceEEEEecC
Confidence 998888887432 2 222211 146778999999999998 57998887654
No 114
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.49 E-value=4.1e-14 Score=137.49 Aligned_cols=149 Identities=21% Similarity=0.359 Sum_probs=113.4
Q ss_pred hhhcCCEEEEEcCCCChhhchhhH-----------HHhcCccCCC----ccccCceEEEEcccchhhhccHHHHHH----
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET----PDRRRKMMIACTQPRRVAAMSVSRRVA---- 137 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~----~~~~~~~~i~~t~p~~~~~~~v~~~v~---- 137 (727)
.+..|++++|+||+||||||++.- +.+++..... ...++.+++++++...++-+++.+++.
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 467999999999999999999873 2233321111 112335678999999999999998883
Q ss_pred ----------HhccccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 138 ----------EEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 138 ----------~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
++........||.. ...+..+..+|+|+.||+.+++++..+|+++++|| ..+|+......++
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~------~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~ 177 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLA------DKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD 177 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCch------hhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHH
Confidence 33444556677755 23456778899999999999999999999999999 5567777888899
Q ss_pred HHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 206 LLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
.++++.+. +.+.+++||.|. +...++
T Consensus 178 vm~~LA~e--GmTMivVTHEM~FAr~Vad 204 (240)
T COG1126 178 VMKDLAEE--GMTMIIVTHEMGFAREVAD 204 (240)
T ss_pred HHHHHHHc--CCeEEEEechhHHHHHhhh
Confidence 99998776 799999999995 344443
No 115
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.48 E-value=6e-14 Score=140.09 Aligned_cols=151 Identities=22% Similarity=0.340 Sum_probs=112.3
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHH-----------HhcCccCCCc-------cccCceEEEEcccchhhhccHHHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETP-------DRRRKMMIACTQPRRVAAMSVSRRVAE 138 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~~~~-------~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (727)
.+.+|+.++|+||+||||||++..+ .+++.++... .+...++++++....+..+++.+++.-
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~l 106 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVEL 106 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHh
Confidence 4689999999999999999998742 2333222211 123467899999999999999999863
Q ss_pred hc---c----------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHH
Q 004850 139 EM---D----------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (727)
Q Consensus 139 ~~---~----------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (727)
.+ + ..+...+|... ...+..+..+|+|+.||+.++++++.+|++|+.|| ..+|+.....+
T Consensus 107 pl~~~~~~~~~~~~~~~~l~~~lgl~~-----~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V 181 (226)
T COG1136 107 PLLIAGKSAGRRKRAAEELLEVLGLED-----RLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEV 181 (226)
T ss_pred HHHHcCCChhHHHHHHHHHHHhcCChh-----hhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHH
Confidence 21 1 11122233220 11235677899999999999999999999999999 67788888899
Q ss_pred HHHHHHHHHhCCCCEEEEEcCcccHHHHHh
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLEAEKFQG 233 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~~~~~~~ 233 (727)
+++++++.+.. +..+|++||+.....+++
T Consensus 182 ~~ll~~~~~~~-g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 182 LELLRELNKER-GKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHhc-CCEEEEEcCCHHHHHhCC
Confidence 99999987765 789999999987665553
No 116
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.48 E-value=1.7e-13 Score=126.75 Aligned_cols=129 Identities=21% Similarity=0.352 Sum_probs=104.6
Q ss_pred eeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhh
Q 004850 250 VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQK 329 (727)
Q Consensus 250 v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 329 (727)
++.+|...+. .+...+...+.+.. ...+++|||+++.+.++.+++.|.+. ...+..+||+++..+|..
T Consensus 2 i~~~~~~~~~-~k~~~i~~~i~~~~--~~~~~~lvf~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~ 69 (131)
T cd00079 2 IKQYVLPVED-EKLEALLELLKEHL--KKGGKVLIFCPSKKMLDELAELLRKP---------GIKVAALHGDGSQEEREE 69 (131)
T ss_pred cEEEEEECCH-HHHHHHHHHHHhcc--cCCCcEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEECCCCHHHHHH
Confidence 3444544332 34444443333322 25779999999999999999999762 577999999999999999
Q ss_pred hcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-C
Q 004850 330 IFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-Q 408 (727)
Q Consensus 330 ~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~ 408 (727)
+++.|.++ ..+|+++|+.++.|+|+|++++||-++. |.+..++.|++||+||. .
T Consensus 70 ~~~~f~~~-------~~~ili~t~~~~~G~d~~~~~~vi~~~~------------------~~~~~~~~Q~~GR~~R~~~ 124 (131)
T cd00079 70 VLKDFREG-------EIVVLVATDVIARGIDLPNVSVVINYDL------------------PWSPSSYLQRIGRAGRAGQ 124 (131)
T ss_pred HHHHHHcC-------CCcEEEEcChhhcCcChhhCCEEEEeCC------------------CCCHHHheecccccccCCC
Confidence 99999988 7899999999999999999999999888 89999999999999999 5
Q ss_pred CceEEEe
Q 004850 409 PGKCFRL 415 (727)
Q Consensus 409 ~G~~~~L 415 (727)
.|.|+.+
T Consensus 125 ~~~~~~~ 131 (131)
T cd00079 125 KGTAILL 131 (131)
T ss_pred CceEEeC
Confidence 8888753
No 117
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=1.6e-12 Score=151.03 Aligned_cols=125 Identities=13% Similarity=0.069 Sum_probs=94.1
Q ss_pred chHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccc
Q 004850 67 VWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGE 146 (727)
Q Consensus 67 ~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~ 146 (727)
++++|.++++.+..++.++..++||+|||+++..+++... +.. ....++.|+++++.+.......+.+.++.+++.
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~a-L~g---~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~ 168 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNA-LTG---KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGV 168 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHH-hhc---CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 6999999999999999999999999999999998888654 221 124567788888877777777788888877777
Q ss_pred eeceeeeeccccccCccccccChHHH-HHHHhcccc-c-------cCCeeEEeeccCc
Q 004850 147 EVGYSIRFEDCSSARTVLKYLTDGML-LREAMTDPL-L-------ERYKVIVLDEAHE 195 (727)
Q Consensus 147 ~vg~~~~~~~~~~~~~~i~~lT~G~l-~r~~~~~~l-l-------~~~~~lIlDEahe 195 (727)
.+|.....++.......|.+.|||++ ...+..+.+ + ..+.++|+||||.
T Consensus 169 i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 169 LVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred EeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 77654322222223578999999999 777665533 2 2558999999874
No 118
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.47 E-value=6.2e-13 Score=151.81 Aligned_cols=330 Identities=19% Similarity=0.231 Sum_probs=188.0
Q ss_pred HHHHhcCCCchHHHHHHH--HhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEE----cccchhhhcc
Q 004850 58 ILEKRKSLPVWQQKEEFL--QVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIAC----TQPRRVAAMS 131 (727)
Q Consensus 58 ~l~~~~~lp~~~~q~~ii--~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~----t~p~~~~~~~ 131 (727)
..+..+.+..+.+|.+.+ +.++++++++...||+.|||...-...+... +.. . +..+.++| .++....
T Consensus 215 ~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~-l~~-r-r~~llilp~vsiv~Ek~~~--- 288 (1008)
T KOG0950|consen 215 YAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREV-LCR-R-RNVLLILPYVSIVQEKISA--- 288 (1008)
T ss_pred HHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHH-HHH-h-hceeEecceeehhHHHHhh---
Confidence 345668888999999987 4578999999999999999986543332221 100 0 00111211 1111111
Q ss_pred HHHHHHHhccccccceeceeeeeccccc-cCccccccChHH---HHHHHhccccccCCeeEEeeccCcChhh--HHH-HH
Q 004850 132 VSRRVAEEMDVTIGEEVGYSIRFEDCSS-ARTVLKYLTDGM---LLREAMTDPLLERYKVIVLDEAHERTLA--TDV-LF 204 (727)
Q Consensus 132 v~~~v~~~~~~~~~~~vg~~~~~~~~~~-~~~~i~~lT~G~---l~r~~~~~~ll~~~~~lIlDEaher~~~--~d~-ll 204 (727)
...+....|..+-. |.-++..... ....+.++|-.. +...++...-+.....||+||-|. ..+ .+. +.
T Consensus 289 -l~~~~~~~G~~ve~---y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhm-i~d~~rg~~lE 363 (1008)
T KOG0950|consen 289 -LSPFSIDLGFPVEE---YAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHM-IGDKGRGAILE 363 (1008)
T ss_pred -hhhhccccCCcchh---hcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeee-eeccccchHHH
Confidence 01111222222222 2211111111 122333444332 334444444577889999999773 111 122 22
Q ss_pred HHHHHHHH--hCCCCEEEEEcCcc-cHHHHHhhhcCCCeeeeCCCccceeeeeccCC---cccHHHHHHHHHHH----Hh
Q 004850 205 GLLKEVLK--NRPDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEP---ERDYLEAAIRTVVQ----IH 274 (727)
Q Consensus 205 ~ll~~l~~--~~~~~~vil~SATl-~~~~~~~~f~~~p~i~v~g~~~~v~~~y~~~~---~~~~~~~~~~~l~~----i~ 274 (727)
.++.+++- .....++|-||||+ |...+++++.. -+..-.-|.-|.+.+..... ..+.. ..+..+-. ..
T Consensus 364 ~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A-~~y~t~fRPv~L~E~ik~G~~i~~~~r~-~~lr~ia~l~~~~~ 441 (1008)
T KOG0950|consen 364 LLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDA-FVYTTRFRPVPLKEYIKPGSLIYESSRN-KVLREIANLYSSNL 441 (1008)
T ss_pred HHHHHHHHhccccceeEeeeecccCChHHHHHHhhh-hheecccCcccchhccCCCcccccchhh-HHHHHhhhhhhhhc
Confidence 33333322 22246799999999 57777777752 11111111111111111000 00000 00111110 00
Q ss_pred -------------hcCCCC-CEEEecCCHHHHHHHHHHHHHHHhhc-------------------CC----------CCC
Q 004850 275 -------------MCEPSG-DILVFLTGEEEIEDACRKITKEITNM-------------------GD----------QVG 311 (727)
Q Consensus 275 -------------~~~~~g-~iLVFl~~~~ei~~l~~~L~~~~~~~-------------------~~----------~~~ 311 (727)
..-+.| ++|||+|++..++.++..+...+... .. ..-
T Consensus 442 g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti 521 (1008)
T KOG0950|consen 442 GDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTI 521 (1008)
T ss_pred ccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheec
Confidence 001223 49999999999999987775443110 00 011
Q ss_pred CeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCcccccccc
Q 004850 312 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP 391 (727)
Q Consensus 312 ~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~p 391 (727)
..-+...|++++.++|+.+-..|+.| ...|++||+-.+.|+..|..+++|-+-++-.. +
T Consensus 522 ~~GvAyHhaGLT~eER~~iE~afr~g-------~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~--------------~ 580 (1008)
T KOG0950|consen 522 PYGVAYHHAGLTSEEREIIEAAFREG-------NIFVLVATSTLAAGVNLPARRVIIRAPYVGRE--------------F 580 (1008)
T ss_pred cccceecccccccchHHHHHHHHHhc-------CeEEEEecchhhccCcCCcceeEEeCCccccc--------------h
Confidence 24577889999999999999999999 89999999999999999999999975542222 7
Q ss_pred ccHhhHHhhhcccCCC---CCceEEEecchhhh
Q 004850 392 ISKASAHQRSGRAGRT---QPGKCFRLYTEKSF 421 (727)
Q Consensus 392 is~~~~~qR~GRaGR~---~~G~~~~L~t~~~~ 421 (727)
.+.-+|.|++|||||+ .-|.++.++.+.+.
T Consensus 581 l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 581 LTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred hhhhhHHhhhhhhhhcccccCcceEEEeeccch
Confidence 8899999999999999 45999999987664
No 119
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=1.7e-12 Score=150.50 Aligned_cols=121 Identities=19% Similarity=0.190 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCC
Q 004850 262 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEG 341 (727)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~ 341 (727)
+..+.++.+...|. ...+||||+.+.+..+.++..|... ++....||+..++.++..+.+.|++|
T Consensus 434 K~~Aii~ei~~~~~--~GrpVLV~t~sv~~se~ls~~L~~~---------gi~~~vLnak~~~~Ea~ii~~Ag~~G---- 498 (908)
T PRK13107 434 KYQAIIKDIKDCRE--RGQPVLVGTVSIEQSELLARLMVKE---------KIPHEVLNAKFHEREAEIVAQAGRTG---- 498 (908)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEeCcHHHHHHHHHHHHHC---------CCCeEeccCcccHHHHHHHHhCCCCC----
Confidence 34555666666664 3568999999999999999999874 68888999999999999999999988
Q ss_pred CCCCcEEEEecCccccCcccC-------------------------------------CeEEEEcCCCccceeeccccCc
Q 004850 342 GPPGRKIVVSTNIAETSLTID-------------------------------------GIVYVIDPGFAKQKVYNPRVRV 384 (727)
Q Consensus 342 ~~~~~kvlvaTniAe~gitIp-------------------------------------~V~~VId~g~~k~~~~~~~~~~ 384 (727)
.|+||||+|.||+||. |=-|||=+..
T Consensus 499 -----~VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTer------------ 561 (908)
T PRK13107 499 -----AVTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTER------------ 561 (908)
T ss_pred -----cEEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEeccc------------
Confidence 4999999999999986 1124554444
Q ss_pred cccccccccHhhHHhhhcccCCC-CCceEEEecchhh
Q 004850 385 ESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (727)
Q Consensus 385 ~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~ 420 (727)
+-|.--=.|=.|||||. -||.+-.+.|-++
T Consensus 562 ------heSrRID~QLrGRaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 562 ------HESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred ------CchHHHHhhhhcccccCCCCCceeEEEEeCc
Confidence 44544455889999999 8998877776443
No 120
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.46 E-value=8.2e-14 Score=142.14 Aligned_cols=151 Identities=21% Similarity=0.330 Sum_probs=120.0
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHH-----------HhcCccCCC------ccccCceEEEEcccchhhhccHHHHHHHh
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET------PDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~~~------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
.|..|++.+|+|.+|+||||++..+ ++++.++.. ...++.++++++.+..+...+|+++++..
T Consensus 28 ~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~P 107 (339)
T COG1135 28 EIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP 107 (339)
T ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhh
Confidence 5789999999999999999999743 334432222 12345678999999999999999999754
Q ss_pred cc-------------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHH
Q 004850 140 MD-------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (727)
Q Consensus 140 ~~-------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (727)
+. .++.+.||.. ...+..+..+|+|++||+.++++++.+|++|+.|| .++|+..+..++
T Consensus 108 Leiag~~k~ei~~RV~elLelVgL~------dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL 181 (339)
T COG1135 108 LELAGVPKAEIKQRVAELLELVGLS------DKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSIL 181 (339)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCCh------hhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHH
Confidence 32 1233455543 23456778899999999999999999999999999 578899999999
Q ss_pred HHHHHHHHhCCCCEEEEEcCcccH-HHHHhh
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~~-~~~~~~ 234 (727)
++|+++.++. +++++|++|.|++ ..+++.
T Consensus 182 ~LL~~In~~l-glTIvlITHEm~Vvk~ic~r 211 (339)
T COG1135 182 ELLKDINREL-GLTIVLITHEMEVVKRICDR 211 (339)
T ss_pred HHHHHHHHHc-CCEEEEEechHHHHHHHhhh
Confidence 9999998887 9999999999985 667754
No 121
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.45 E-value=1.3e-13 Score=139.65 Aligned_cols=143 Identities=18% Similarity=0.258 Sum_probs=101.2
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh-----------cCccCCCccccCceEEEEccc--chhhhccHHHHHHHhccc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIETPDRRRKMMIACTQP--RRVAAMSVSRRVAEEMDV- 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~~~~~~~~~i~~t~p--~~~~~~~v~~~v~~~~~~- 142 (727)
.+..|+.++|+|||||||||++..++= .+.+.........+..+|++. ....-++|.+-+...+..
T Consensus 26 ~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~ 105 (254)
T COG1121 26 SVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGK 105 (254)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccc
Confidence 367899999999999999999986541 111011111112456677655 233346777666432211
Q ss_pred ----------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHH
Q 004850 143 ----------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (727)
Q Consensus 143 ----------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (727)
...+.||.. ...+..|..+|+|++||+++|+++++++++++||| +..|......+.
T Consensus 106 ~g~~~~~~~~d~~~v~~aL~~Vgm~------~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~ 179 (254)
T COG1121 106 KGWFRRLNKKDKEKVDEALERVGME------DLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIY 179 (254)
T ss_pred ccccccccHHHHHHHHHHHHHcCch------hhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHH
Confidence 122333432 23467888999999999999999999999999999 566777888899
Q ss_pred HHHHHHHHhCCCCEEEEEcCccc
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~ 227 (727)
++++++.+. +..|+++||+++
T Consensus 180 ~lL~~l~~e--g~tIl~vtHDL~ 200 (254)
T COG1121 180 DLLKELRQE--GKTVLMVTHDLG 200 (254)
T ss_pred HHHHHHHHC--CCEEEEEeCCcH
Confidence 999998776 899999999985
No 122
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.44 E-value=3.8e-13 Score=156.43 Aligned_cols=162 Identities=21% Similarity=0.309 Sum_probs=121.1
Q ss_pred EEEEEcCccc--HHHHHhhhcCCCeeeeCCCccce------eeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCH
Q 004850 218 KLVVMSATLE--AEKFQGYFYGAPLMKVPGRLHPV------EIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 289 (727)
Q Consensus 218 ~vil~SATl~--~~~~~~~f~~~p~i~v~g~~~~v------~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~ 289 (727)
++--||.|.. ...|.+. .+-+++.||.. .|+ +..| ....++..+++..+...+. ...++|||+++.
T Consensus 535 kLaGMTGTA~te~~Ef~~i-Y~L~Vv~IPTn-rP~~R~D~~d~vy--~t~~eK~~Ali~~I~~~~~--~grpVLIft~Sv 608 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEI-YKLDVVVIPTN-KPIVRKDMDDLVY--KTRREKYNAIVLKVEELQK--KGQPVLVGTASV 608 (1025)
T ss_pred hhcccCCCChhHHHHHHHH-hCCcEEECCCC-CCcceecCCCeEe--cCHHHHHHHHHHHHHHHhh--CCCCEEEEeCcH
Confidence 4555666663 2333322 24567777653 122 1222 2234566666666665553 466899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccC---CeE-
Q 004850 290 EEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID---GIV- 365 (727)
Q Consensus 290 ~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp---~V~- 365 (727)
+..+.+++.|... ++....||+ .+.+|+..+..|..+ .-.|+||||+|+||+||+ +|.
T Consensus 609 e~sE~Ls~~L~~~---------gI~h~vLna--kq~~REa~Iia~AG~-------~g~VtIATNMAGRGtDIkl~~~V~~ 670 (1025)
T PRK12900 609 EVSETLSRMLRAK---------RIAHNVLNA--KQHDREAEIVAEAGQ-------KGAVTIATNMAGRGTDIKLGEGVRE 670 (1025)
T ss_pred HHHHHHHHHHHHc---------CCCceeecC--CHHHhHHHHHHhcCC-------CCeEEEeccCcCCCCCcCCccchhh
Confidence 9999999999874 677888997 578888888888877 679999999999999999 664
Q ss_pred ----EEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhh
Q 004850 366 ----YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (727)
Q Consensus 366 ----~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~ 421 (727)
+||++.. |-|...|.||.|||||. .||.+..+++.++.
T Consensus 671 vGGL~VIgter------------------hes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 671 LGGLFILGSER------------------HESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred hCCceeeCCCC------------------CchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 4588888 99999999999999999 89999999997664
No 123
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.43 E-value=1e-13 Score=141.17 Aligned_cols=158 Identities=20% Similarity=0.290 Sum_probs=111.1
Q ss_pred hhhcCCEEEEEcCCCChhhchhhH-----------HHhcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhccc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (727)
.+.+|++++|+|||||||||++.. +.+++.++.. ....+.+.++|+.+.....++|.+-|...+..
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p 103 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYP 103 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCc
Confidence 367899999999999999999873 2333333222 12234677888887766777887777554321
Q ss_pred cccce----------eceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 143 TIGEE----------VGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 143 ~~~~~----------vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
..+.. |-.....-+. ......+..+|+|++|++++++++++++++++||| .|+|..+...+++++++
T Consensus 104 ~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~ 183 (258)
T COG1120 104 HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183 (258)
T ss_pred ccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHH
Confidence 11000 0000000011 11245677899999999999999999999999999 78888888889999999
Q ss_pred HHHhCCCCEEEEEcCccc-HHHHHhhh
Q 004850 210 VLKNRPDLKLVVMSATLE-AEKFQGYF 235 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~-~~~~~~~f 235 (727)
+.+++ +..+|++.|+++ +..|++++
T Consensus 184 l~~~~-~~tvv~vlHDlN~A~ryad~~ 209 (258)
T COG1120 184 LNREK-GLTVVMVLHDLNLAARYADHL 209 (258)
T ss_pred HHHhc-CCEEEEEecCHHHHHHhCCEE
Confidence 98765 899999999997 46666653
No 124
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.43 E-value=2.5e-13 Score=131.74 Aligned_cols=154 Identities=21% Similarity=0.232 Sum_probs=94.4
Q ss_pred hHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccc---cc
Q 004850 68 WQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV---TI 144 (727)
Q Consensus 68 ~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~---~~ 144 (727)
|+.|.++++.+.+|+++++.||||||||+.+..++++.. ... .....++++|++ ..+.+..+++...... ..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~-~~~-~~~~~lii~P~~---~l~~q~~~~~~~~~~~~~~~~ 75 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRL-QEG-KDARVLIIVPTR---ALAEQQFERLRKFFSNTNVRV 75 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHH-HTT-SSSEEEEEESSH---HHHHHHHHHHHHHTTTTTSSE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhh-ccC-CCceEEEEeecc---ccccccccccccccccccccc
Confidence 578999999999999999999999999999988776543 111 111233344444 4444445555443332 22
Q ss_pred cceeceeeee-cc--ccccCccccccChHHHHHHHhccc-cccCCeeEEeeccCcChhh--HHHHHHHHHHHHHhCCCCE
Q 004850 145 GEEVGYSIRF-ED--CSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLA--TDVLFGLLKEVLKNRPDLK 218 (727)
Q Consensus 145 ~~~vg~~~~~-~~--~~~~~~~i~~lT~G~l~r~~~~~~-ll~~~~~lIlDEaher~~~--~d~ll~ll~~l~~~~~~~~ 218 (727)
....|..... +. ....+..+.++|++++.+.+.... .+.++++||+||+|.-... ...+..++..+ ...++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~-~~~~~~~ 154 (169)
T PF00270_consen 76 VLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRL-KRFKNIQ 154 (169)
T ss_dssp EEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHS-HTTTTSE
T ss_pred ccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHh-cCCCCCc
Confidence 2222211100 00 111357888999999998887632 3566999999999963331 11222333332 2233689
Q ss_pred EEEEcCccc
Q 004850 219 LVVMSATLE 227 (727)
Q Consensus 219 vil~SATl~ 227 (727)
++++|||+.
T Consensus 155 ~i~~SAT~~ 163 (169)
T PF00270_consen 155 IILLSATLP 163 (169)
T ss_dssp EEEEESSST
T ss_pred EEEEeeCCC
Confidence 999999997
No 125
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.42 E-value=1.4e-13 Score=133.13 Aligned_cols=162 Identities=24% Similarity=0.389 Sum_probs=111.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhH----------------HHhcCccCCCc-----cccCceEEEEcccchhhhccHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQ----------------FVLEGVDIETP-----DRRRKMMIACTQPRRVAAMSVSRR 135 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~----------------~ll~~~~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~ 135 (727)
.|.++++++++||+||||||++.- +++++.++..+ ..++.+++++++|..++ +++.++
T Consensus 29 ~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydN 107 (253)
T COG1117 29 DIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDN 107 (253)
T ss_pred eccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHH
Confidence 357899999999999999999872 22333333221 12446789999999988 999999
Q ss_pred HHHhcc---cc---ccceeceeeee-----ccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHH
Q 004850 136 VAEEMD---VT---IGEEVGYSIRF-----EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (727)
Q Consensus 136 v~~~~~---~~---~~~~vg~~~~~-----~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (727)
++-... .. +.+.|....+. +-....+....-+|+|+.||+++++++.-+|++|++|| ..+|++.+..
T Consensus 108 VayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~k 187 (253)
T COG1117 108 VAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLK 187 (253)
T ss_pred HHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHH
Confidence 975321 11 01112111111 11111233444699999999999999999999999999 6688999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCccc-HHHHH---hhhcCCCeee
Q 004850 203 LFGLLKEVLKNRPDLKLVVMSATLE-AEKFQ---GYFYGAPLMK 242 (727)
Q Consensus 203 ll~ll~~l~~~~~~~~vil~SATl~-~~~~~---~~f~~~p~i~ 242 (727)
+.+++.++.+ +.++|++||.|. +...+ .||..-.++.
T Consensus 188 IEeLi~eLk~---~yTIviVTHnmqQAaRvSD~taFf~~G~LvE 228 (253)
T COG1117 188 IEELITELKK---KYTIVIVTHNMQQAARVSDYTAFFYLGELVE 228 (253)
T ss_pred HHHHHHHHHh---ccEEEEEeCCHHHHHHHhHhhhhhcccEEEE
Confidence 9999999863 679999999995 44444 4454333433
No 126
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.39 E-value=2e-13 Score=114.94 Aligned_cols=71 Identities=24% Similarity=0.287 Sum_probs=68.5
Q ss_pred CeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCcccccccc
Q 004850 312 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP 391 (727)
Q Consensus 312 ~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~p 391 (727)
++.+..+||++++.+|..+++.|..+ ..+||+||+++++|||+|++++||.++. |
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~-------~~~vli~t~~~~~Gid~~~~~~vi~~~~------------------~ 61 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSG-------EIRVLIATDILGEGIDLPDASHVIFYDP------------------P 61 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTT-------SSSEEEESCGGTTSSTSTTESEEEESSS------------------E
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhcc-------CceEEEeecccccccccccccccccccc------------------C
Confidence 78899999999999999999999998 7799999999999999999999999999 9
Q ss_pred ccHhhHHhhhcccCCC
Q 004850 392 ISKASAHQRSGRAGRT 407 (727)
Q Consensus 392 is~~~~~qR~GRaGR~ 407 (727)
-+..+|.||+||+||.
T Consensus 62 ~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 62 WSPEEYIQRIGRAGRI 77 (78)
T ss_dssp SSHHHHHHHHTTSSTT
T ss_pred CCHHHHHHHhhcCCCC
Confidence 9999999999999996
No 127
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.38 E-value=9.8e-13 Score=130.50 Aligned_cols=152 Identities=24% Similarity=0.327 Sum_probs=107.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc----cccCceEEEEcccchh--hhccHHHHHHHh
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP----DRRRKMMIACTQPRRV--AAMSVSRRVAEE 139 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~----~~~~~~~i~~t~p~~~--~~~~v~~~v~~~ 139 (727)
.+..|+.++|+|++||||||+....+ +++...... ...+.+.++++.|... +..++.+.+.+.
T Consensus 29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Ep 108 (252)
T COG1124 29 EIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEP 108 (252)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhh
Confidence 35799999999999999999887432 333222211 1234566888877432 344555555444
Q ss_pred cc-----------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHH
Q 004850 140 MD-----------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (727)
Q Consensus 140 ~~-----------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~l 206 (727)
+. ..+...||... ......+..+|+|++||+.+++++..+|++||+|| .-+|......++++
T Consensus 109 l~~~~~~~~~~~i~~~L~~VgL~~-----~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~Ilnl 183 (252)
T COG1124 109 LRPHGLSKSQQRIAELLDQVGLPP-----SFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNL 183 (252)
T ss_pred hccCCccHHHHHHHHHHHHcCCCH-----HHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHH
Confidence 32 23334455331 12356777899999999999999999999999999 45677777889999
Q ss_pred HHHHHHhCCCCEEEEEcCcccH-HHHHhh
Q 004850 207 LKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (727)
Q Consensus 207 l~~l~~~~~~~~vil~SATl~~-~~~~~~ 234 (727)
+.++.+.+ ++..+++||++.. +.+++.
T Consensus 184 L~~l~~~~-~lt~l~IsHdl~~v~~~cdR 211 (252)
T COG1124 184 LLELKKER-GLTYLFISHDLALVEHMCDR 211 (252)
T ss_pred HHHHHHhc-CceEEEEeCcHHHHHHHhhh
Confidence 99998887 8999999999963 555544
No 128
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.35 E-value=9.7e-13 Score=139.18 Aligned_cols=156 Identities=18% Similarity=0.276 Sum_probs=109.7
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHH-----------HhcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhcccc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT- 143 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~- 143 (727)
.+.+|+.++++||+||||||++..+ .+++.+... +...|++.++++..-..+-++|+++++..+...
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~ 104 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG 104 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC
Confidence 4689999999999999999998843 344443433 344578899999999999999999998655321
Q ss_pred -----ccceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCC
Q 004850 144 -----IGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (727)
Q Consensus 144 -----~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~ 215 (727)
+-..|......-+. ...+..+..+|+|+.||+.++++++.+|+++++|| ..+|......+...++++.++.
T Consensus 105 ~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l- 183 (338)
T COG3839 105 VPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERL- 183 (338)
T ss_pred CchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhc-
Confidence 11111111111111 12467788999999999999999999999999999 4444444455666677765554
Q ss_pred CCEEEEEcCcc-cHHHHHh
Q 004850 216 DLKLVVMSATL-EAEKFQG 233 (727)
Q Consensus 216 ~~~vil~SATl-~~~~~~~ 233 (727)
+.++|.+||+. ++..+++
T Consensus 184 ~~T~IYVTHDq~EAmtlad 202 (338)
T COG3839 184 GTTTIYVTHDQVEAMTLAD 202 (338)
T ss_pred CCcEEEEcCCHHHHHhhCC
Confidence 78899999997 3444443
No 129
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.33 E-value=1.3e-12 Score=128.68 Aligned_cols=151 Identities=23% Similarity=0.340 Sum_probs=111.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHH-----------HhcCccCCC------ccccCceEEEEcccchhhhccHHHHHHHh
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET------PDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~~~------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
.|.+|+.|+|+|++||||||++..+ ++++.+..+ ...++.++++++++..+.-.+|.++|...
T Consensus 26 ~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~g 105 (258)
T COG3638 26 EINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLG 105 (258)
T ss_pred EeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhh
Confidence 3679999999999999999998732 233322222 11245678999999999999999988532
Q ss_pred cc---------------------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcC
Q 004850 140 MD---------------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHER 196 (727)
Q Consensus 140 ~~---------------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher 196 (727)
+- ....+.||.. ...-.+...+|+|+.||+.+++++.+++++|+-|| +-+|
T Consensus 106 rl~~~s~~~slfglfsk~dk~~Al~aLervgi~------~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLD 179 (258)
T COG3638 106 RLGYTSTWRSLFGLFSKEDKAQALDALERVGIL------DKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179 (258)
T ss_pred hcccchHHHHHhCCCCHHHHHHHHHHHHHcCcH------HHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccC
Confidence 21 1111222221 11234455799999999999999999999999999 7889
Q ss_pred hhhHHHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHhh
Q 004850 197 TLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 197 ~~~~d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~~ 234 (727)
+..+..+++.++++.+.. +.++|+..|+++ +..|++.
T Consensus 180 p~~a~~Vm~~l~~in~~~-g~Tvi~nLH~vdlA~~Y~~R 217 (258)
T COG3638 180 PESAKKVMDILKDINQED-GITVIVNLHQVDLAKKYADR 217 (258)
T ss_pred hhhHHHHHHHHHHHHHHc-CCEEEEEechHHHHHHHHhh
Confidence 999999999999998775 899999999997 3445543
No 130
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.31 E-value=4e-12 Score=121.23 Aligned_cols=146 Identities=20% Similarity=0.336 Sum_probs=106.5
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCccccCceEEEEcccchhhhccHHHHHHHhcc----
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD---- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~---- 141 (727)
.|..|+.|++.||+||||||++..+. +++..+..+.. .-.++++.+..++.+++.++++..+.
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~dNvafgL~l~Gi 104 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVIDNVAFGLQLRGI 104 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc--cceeEeccCccchhhHHHHHHHHHHHhcCC
Confidence 46789999999999999999987432 22222222222 23588999999999999999864332
Q ss_pred ---------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 142 ---------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 142 ---------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
......||.. ...+..|..+|+|+.||.-+++++.-+|+++++|| ...|-+..+-+..++-++
T Consensus 105 ~k~~R~~~a~q~l~~VgL~------~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldl 178 (259)
T COG4525 105 EKAQRREIAHQMLALVGLE------GAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDL 178 (259)
T ss_pred CHHHHHHHHHHHHHHhCcc------cccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHH
Confidence 1223345533 22367888999999999999999999999999999 334455566677777777
Q ss_pred HHhCCCCEEEEEcCcccHHHH
Q 004850 211 LKNRPDLKLVVMSATLEAEKF 231 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~~~~~ 231 (727)
.+.. +.++++++|.++...|
T Consensus 179 w~~t-gk~~lliTH~ieEAlf 198 (259)
T COG4525 179 WQET-GKQVLLITHDIEEALF 198 (259)
T ss_pred HHHh-CCeEEEEeccHHHHHh
Confidence 6665 8899999999976554
No 131
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.29 E-value=1.8e-12 Score=128.65 Aligned_cols=152 Identities=21% Similarity=0.312 Sum_probs=113.3
Q ss_pred hhhcCCEEEEEcCCCChhhchhhH-----------HHhcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHh---
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEE--- 139 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~--- 139 (727)
.|.+|+.++++||+||||||++.- +.+++.++.. ...++.++++.++--.++.++++++++--
T Consensus 23 ~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L 102 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKL 102 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhh
Confidence 367899999999999999999873 3344443333 12345667777777778888999888531
Q ss_pred ----------ccccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHH
Q 004850 140 ----------MDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (727)
Q Consensus 140 ----------~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll 207 (727)
+..++...||... ....+..+..+|+|+.||+-+++++..+|.++++|| ..+|++....+-+.+
T Consensus 103 ~~w~k~~i~~r~~ELl~lvgL~p----~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~ 178 (309)
T COG1125 103 LGWDKERIKKRADELLDLVGLDP----SEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEI 178 (309)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCH----HHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHH
Confidence 1223344455331 122456788899999999999999999999999999 456889999999999
Q ss_pred HHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 208 KEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 208 ~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+++.+.. +.++|++||+++. -++++
T Consensus 179 ~~lq~~l-~kTivfVTHDidEA~kLad 204 (309)
T COG1125 179 KELQKEL-GKTIVFVTHDIDEALKLAD 204 (309)
T ss_pred HHHHHHh-CCEEEEEecCHHHHHhhhc
Confidence 9988776 8899999999964 44554
No 132
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.28 E-value=5e-12 Score=124.98 Aligned_cols=153 Identities=21% Similarity=0.301 Sum_probs=114.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc------cccCceEEEEcccchhhhccHHHHHHHh
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
.+..|++++|+|++||||||++..++ +++.++... ...+.+++++++--.+..++|+++++..
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp 109 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFP 109 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhee
Confidence 36789999999999999999998654 222222211 1234577888888888899999999643
Q ss_pred ccc--------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHH
Q 004850 140 MDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (727)
Q Consensus 140 ~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (727)
+.+ .-.+.||..- ...+..+..+|+|+..|..+++++..+|+++++|| +.+|++.+..+
T Consensus 110 lre~~~lp~~~i~~lv~~KL~~VGL~~-----~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~ 184 (263)
T COG1127 110 LREHTKLPESLIRELVLMKLELVGLRG-----AAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVI 184 (263)
T ss_pred hHhhccCCHHHHHHHHHHHHHhcCCCh-----hhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHH
Confidence 211 1123444331 11345567899999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHhCCCCEEEEEcCcccH-HHHHhhh
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLEA-EKFQGYF 235 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~~-~~~~~~f 235 (727)
-++++++.... +.+++++||+++. ...++++
T Consensus 185 ~~LI~~L~~~l-g~T~i~VTHDl~s~~~i~Drv 216 (263)
T COG1127 185 DELIRELNDAL-GLTVIMVTHDLDSLLTIADRV 216 (263)
T ss_pred HHHHHHHHHhh-CCEEEEEECChHHHHhhhceE
Confidence 99999998775 8999999999964 5555553
No 133
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.27 E-value=5.9e-12 Score=119.87 Aligned_cols=144 Identities=22% Similarity=0.300 Sum_probs=108.2
Q ss_pred HhhhcCCEEEEEcCCCChhhchhhHHHhc-----------CccCCC------ccccCceEEEEcccchhhhccHHHHHHH
Q 004850 76 QVLKANQVIILVGETGSGKTTQIPQFVLE-----------GVDIET------PDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (727)
Q Consensus 76 ~~i~~g~~vii~g~TGSGKTt~~~~~ll~-----------~~~~~~------~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (727)
-.|..|+.+.++||+|+||||++..+... +.++.. +..++.++++++.-+.+.-.+++++++-
T Consensus 23 ~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 23 FHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred EeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 35789999999999999999999865533 222222 2235678899999999999999999975
Q ss_pred hcc-------------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHH
Q 004850 139 EMD-------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (727)
Q Consensus 139 ~~~-------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (727)
.+. ..+.+.||.. ...+..+..+|+|..||+.+++++..+|.+|+.|| ..+|+-....+
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~------~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~i 176 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLK------HKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEI 176 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccc------hhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHH
Confidence 442 2233445533 22345567899999999999999999999999999 45566666678
Q ss_pred HHHHHHHHHhCCCCEEEEEcCccc
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~ 227 (727)
+.++.++... +.++++.||..+
T Consensus 177 m~lfeeinr~--GtTVl~ATHd~~ 198 (223)
T COG2884 177 MRLFEEINRL--GTTVLMATHDLE 198 (223)
T ss_pred HHHHHHHhhc--CcEEEEEeccHH
Confidence 8888887655 788999888764
No 134
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.27 E-value=2.5e-12 Score=136.87 Aligned_cols=150 Identities=26% Similarity=0.335 Sum_probs=111.1
Q ss_pred hhhcCCEEEEEcCCCChhhchhhH-----------HHhcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhccc--
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (727)
.|.+|+++.+.||+||||||++.. +.+++.++.. +...|.+.++++....++-++|+++++..+..
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~ 106 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK 106 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC
Confidence 367899999999999999999873 3445544443 34456888999999999999999999765541
Q ss_pred ------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 143 ------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 143 ------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
.....|+.. ...+..+..+|+|+.||+.+++++..+|++++||| ..+|......+...++
T Consensus 107 ~~~~~~i~~rv~e~L~lV~L~------~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk 180 (352)
T COG3842 107 KLKKAEIKARVEEALELVGLE------GFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELK 180 (352)
T ss_pred CCCHHHHHHHHHHHHHHcCch------hhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHH
Confidence 111122211 23467788999999999999999999999999999 3444444555666777
Q ss_pred HHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 209 EVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
++.++. +.+.|++||+.. +-.+++
T Consensus 181 ~lq~~~-giT~i~VTHDqeEAl~msD 205 (352)
T COG3842 181 ELQREL-GITFVYVTHDQEEALAMSD 205 (352)
T ss_pred HHHHhc-CCeEEEEECCHHHHhhhcc
Confidence 777666 899999999984 334443
No 135
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.26 E-value=5.8e-12 Score=118.98 Aligned_cols=149 Identities=19% Similarity=0.363 Sum_probs=109.2
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhcc---
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD--- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~--- 141 (727)
.+..|+.++|+||+||||||++..+. +++.+... +...+.+.++++.-..++-.+|+++++-.+.
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L 100 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL 100 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccc
Confidence 35789999999999999999998543 33332221 2234566677777777788888888853221
Q ss_pred ----------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 142 ----------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 142 ----------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
......||.. ...+..+..+|+|+++|+.+++.++.+-.+++||| +-+++.....++.++.+
T Consensus 101 kL~a~~r~~v~~aa~~vGl~------~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~ 174 (231)
T COG3840 101 KLNAEQREKVEAAAAQVGLA------GFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQ 174 (231)
T ss_pred ccCHHHHHHHHHHHHHhChh------hHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHH
Confidence 1122334433 12345566899999999999999999999999999 56677778889999999
Q ss_pred HHHhCCCCEEEEEcCccc-HHHHH
Q 004850 210 VLKNRPDLKLVVMSATLE-AEKFQ 232 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~-~~~~~ 232 (727)
+...+ +.+++++||+.+ +..++
T Consensus 175 l~~E~-~~TllmVTH~~~Da~~ia 197 (231)
T COG3840 175 LCDER-KMTLLMVTHHPEDAARIA 197 (231)
T ss_pred HHHhh-CCEEEEEeCCHHHHHHhh
Confidence 98876 899999999985 44444
No 136
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.25 E-value=1.2e-11 Score=133.37 Aligned_cols=149 Identities=22% Similarity=0.337 Sum_probs=108.2
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc------cccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.++++...
T Consensus 28 i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~ 107 (343)
T TIGR02314 28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPL 107 (343)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHH
Confidence 5789999999999999999988432 223222211 01335778888877777788888886432
Q ss_pred cc-------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 141 DV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 141 ~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
.. .....+|.. ...+..+..+|+|+++|+.++++++.+|+++++|| +++|...+..++.
T Consensus 108 ~~~~~~~~~~~~~v~e~l~~vgL~------~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~ 181 (343)
T TIGR02314 108 ELDNTPKDEIKRKVTELLALVGLG------DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILE 181 (343)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCc------hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH
Confidence 10 112223321 12356677899999999999999999999999999 6788888889999
Q ss_pred HHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+++++.+.. +.++|++||.++. ..+++
T Consensus 182 lL~~l~~~~-g~tiiliTH~~~~v~~~~d 209 (343)
T TIGR02314 182 LLKEINRRL-GLTILLITHEMDVVKRICD 209 (343)
T ss_pred HHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 999987654 7899999999864 45554
No 137
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=1.2e-11 Score=134.45 Aligned_cols=150 Identities=15% Similarity=0.185 Sum_probs=108.1
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhccc---
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (727)
+..|+.++|+|||||||||++..+. +++.++.. +...+.+.++++.+.....+++.++++.....
T Consensus 27 i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~ 106 (356)
T PRK11650 27 VADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGM 106 (356)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCC
Confidence 5689999999999999999987432 23322221 11235677888888777788999988643211
Q ss_pred ----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
.+...+|.. ...+..+..+|+|+.+|+.++++++.+|++++||| +++|......+...++++
T Consensus 107 ~~~~~~~~~~~~l~~~gL~------~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l 180 (356)
T PRK11650 107 PKAEIEERVAEAARILELE------PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRL 180 (356)
T ss_pred CHHHHHHHHHHHHHHcCCh------hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 111112211 12356677899999999999999999999999999 677777788888888887
Q ss_pred HHhCCCCEEEEEcCccc-HHHHHhh
Q 004850 211 LKNRPDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~-~~~~~~~ 234 (727)
.+.. +..+|++||..+ +..+++.
T Consensus 181 ~~~~-g~tii~vTHd~~ea~~l~D~ 204 (356)
T PRK11650 181 HRRL-KTTSLYVTHDQVEAMTLADR 204 (356)
T ss_pred HHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 6654 789999999985 4455543
No 138
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.24 E-value=1.3e-11 Score=134.09 Aligned_cols=149 Identities=19% Similarity=0.314 Sum_probs=107.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHH-----------HhcCccCCCcc---c----cCceEEEEcccchhhhccHHHHHHHh
Q 004850 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETPD---R----RRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~~~~~---~----~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
+..|+.++|+|++||||||++..+ .+++.++.... . .+.+.++++++..+...++.++++..
T Consensus 16 i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~ 95 (363)
T TIGR01186 16 IAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLG 95 (363)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHH
Confidence 578999999999999999998743 23333332211 1 34677888888777778888887542
Q ss_pred cc-------------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHH
Q 004850 140 MD-------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (727)
Q Consensus 140 ~~-------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (727)
.. ..+...+|.. ...+..+..+|+|+++|+.++++++.+++++++|| +.+|......+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~vgL~------~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~ 169 (363)
T TIGR01186 96 PELLGWPEQERKEKALELLKLVGLE------EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQ 169 (363)
T ss_pred HHHcCCCHHHHHHHHHHHHHhcCCc------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 21 1112223321 12356677899999999999999999999999999 677888888899
Q ss_pred HHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
+.+.++.... +.++|++||.++ +..+++
T Consensus 170 ~~l~~l~~~~-~~Tii~vTHd~~ea~~~~d 198 (363)
T TIGR01186 170 DELKKLQATL-QKTIVFITHDLDEAIRIGD 198 (363)
T ss_pred HHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 9988886543 689999999996 345554
No 139
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.24 E-value=7.2e-12 Score=127.47 Aligned_cols=150 Identities=22% Similarity=0.320 Sum_probs=106.1
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHH-----------HhcCccCC----CccccCceEEEEcccch-hhhccHHHHHHHhc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIE----TPDRRRKMMIACTQPRR-VAAMSVSRRVAEEM 140 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~~----~~~~~~~~~i~~t~p~~-~~~~~v~~~v~~~~ 140 (727)
.+..|+.++++|+|||||||++... .+++.+.. .....+.++++++.|.. +..-+|.+.++...
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~ 105 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL 105 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhch
Confidence 3578999999999999999998732 12222111 01123456788888853 34556777665321
Q ss_pred ---c----------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 141 ---D----------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 141 ---~----------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
+ ......+|.. ...+..+..+|+|+++|+.++..+..+|+++|||| +.+|......++.
T Consensus 106 ~n~g~~~~e~~~rv~~~l~~vgl~------~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~ 179 (235)
T COG1122 106 ENLGLPREEIEERVAEALELVGLE------ELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLE 179 (235)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCch------hhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 1 1122233322 12466788999999999999999999999999999 7888888889999
Q ss_pred HHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 206 LLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
+++++.... +.++|++||.++ ...+++
T Consensus 180 ~l~~L~~~~-~~tii~~tHd~~~~~~~ad 207 (235)
T COG1122 180 LLKKLKEEG-GKTIIIVTHDLELVLEYAD 207 (235)
T ss_pred HHHHHHhcC-CCeEEEEeCcHHHHHhhCC
Confidence 999987664 679999999996 344444
No 140
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=1.7e-11 Score=132.98 Aligned_cols=150 Identities=17% Similarity=0.254 Sum_probs=107.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhccc---
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (727)
+..|+.++|+||+||||||++..+. +++.++.. +...+.+.++++.+...+-+++.++++.....
T Consensus 29 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~ 108 (351)
T PRK11432 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGV 108 (351)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCC
Confidence 5689999999999999999987532 22222211 11235677888888777778999988643211
Q ss_pred ----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
.....+|.. ...+..+..+|+|+++|+.++++++.+|++++||| +++|......+...++++
T Consensus 109 ~~~~~~~~v~~~l~~~gl~------~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 182 (351)
T PRK11432 109 PKEERKQRVKEALELVDLA------GFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIREL 182 (351)
T ss_pred CHHHHHHHHHHHHHHcCCc------hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 111122211 12356677899999999999999999999999999 777777788888888888
Q ss_pred HHhCCCCEEEEEcCcccH-HHHHhh
Q 004850 211 LKNRPDLKLVVMSATLEA-EKFQGY 234 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~~-~~~~~~ 234 (727)
.+.. +..+|++||..+. ..+++.
T Consensus 183 ~~~~-g~tii~vTHd~~e~~~laD~ 206 (351)
T PRK11432 183 QQQF-NITSLYVTHDQSEAFAVSDT 206 (351)
T ss_pred HHhc-CCEEEEEcCCHHHHHHhCCE
Confidence 6654 7899999999853 455544
No 141
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.22 E-value=1.5e-11 Score=130.19 Aligned_cols=151 Identities=23% Similarity=0.351 Sum_probs=109.4
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC--ccccCceEEEEcccchhhhccHHHHHHH---hc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAE---EM 140 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~---~~ 140 (727)
.+.+|++++++|||||||||++.... +.+.+... ....+.+++++..|.....+++.+.+.. ..
T Consensus 27 ~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~ 106 (293)
T COG1131 27 EVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY 106 (293)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHh
Confidence 35789999999999999999988433 22211111 1123357888999988888888877632 22
Q ss_pred cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 141 DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 141 ~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
+. .+...+|.. . ..+..+..+|.|+++|+.++.+++.+|+++|||| .++|+.....+.++++
T Consensus 107 ~~~~~~~~~~~~~~l~~~~L~----~--~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~ 180 (293)
T COG1131 107 GLSKEEAEERIEELLELFGLE----D--KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLR 180 (293)
T ss_pred CCChhHHHHHHHHHHHHcCCc----h--hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHH
Confidence 21 122233322 1 1256688899999999999999999999999999 7888899999999999
Q ss_pred HHHHhCCCCEEEEEcCccc-HHHHHhh
Q 004850 209 EVLKNRPDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~-~~~~~~~ 234 (727)
.+.+.. +..|++.||-++ .+.++++
T Consensus 181 ~l~~~g-~~tvlissH~l~e~~~~~d~ 206 (293)
T COG1131 181 ELAKEG-GVTILLSTHILEEAEELCDR 206 (293)
T ss_pred HHHhCC-CcEEEEeCCcHHHHHHhCCE
Confidence 987763 478999999985 4555553
No 142
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.22 E-value=2.1e-11 Score=123.97 Aligned_cols=144 Identities=23% Similarity=0.328 Sum_probs=98.2
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc-------ccCceEEEEcccchhhhccHHHHHHHh
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD-------RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~-------~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
+..|+.++|+|+|||||||++..+. +++.++.... ..+.+.++++.+......++.+++...
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 106 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP 106 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHH
Confidence 5789999999999999999987432 1221111100 112456667766655556777776432
Q ss_pred ccc-------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHH
Q 004850 140 MDV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (727)
Q Consensus 140 ~~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (727)
... .....+|.. ...+..+..+|+|+++++.++++++.+++++|||| +++|......+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~ 180 (218)
T cd03255 107 LLLAGVPKKERRERAEELLERVGLG------DRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVM 180 (218)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCCc------hhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHH
Confidence 110 011111111 11245667899999999999999999999999999 677777888889
Q ss_pred HHHHHHHHhCCCCEEEEEcCcccH
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
.+++++.+.. +..+|++||.++.
T Consensus 181 ~~l~~~~~~~-~~tii~~sH~~~~ 203 (218)
T cd03255 181 ELLRELNKEA-GTTIVVVTHDPEL 203 (218)
T ss_pred HHHHHHHHhc-CCeEEEEECCHHH
Confidence 9998876533 6789999999864
No 143
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.22 E-value=2e-11 Score=132.55 Aligned_cols=149 Identities=21% Similarity=0.296 Sum_probs=107.4
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhccc---
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (727)
+..|+.++|.||+||||||++..+. +++.++.. +...+.+.++++++.....+++.++++.....
T Consensus 27 i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~ 106 (353)
T TIGR03265 27 VKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGM 106 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCC
Confidence 5689999999999999999987432 23322221 12235678888888877788999988643211
Q ss_pred ----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
.+...+|.. ...+..+..+|+|+.+|+.++++++.+|++++||| +++|......+...++++
T Consensus 107 ~~~~~~~~~~~~l~~l~L~------~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l 180 (353)
T TIGR03265 107 GRAEVAERVAELLDLVGLP------GSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQL 180 (353)
T ss_pred CHHHHHHHHHHHHHHcCCC------chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 011112211 12356778899999999999999999999999999 667777777788888887
Q ss_pred HHhCCCCEEEEEcCccc-HHHHHh
Q 004850 211 LKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
.+.. +..+|++||..+ +..+++
T Consensus 181 ~~~~-~~tvi~vTHd~~ea~~l~d 203 (353)
T TIGR03265 181 QRRL-GVTTIMVTHDQEEALSMAD 203 (353)
T ss_pred HHhc-CCEEEEEcCCHHHHHHhCC
Confidence 6654 789999999985 344554
No 144
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.21 E-value=2.1e-11 Score=133.22 Aligned_cols=150 Identities=22% Similarity=0.281 Sum_probs=107.7
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhccc---
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (727)
+..|+.++|.||+||||||++..+. +++.++.. +...+.+.++++.+...+-+++.++++.....
T Consensus 37 i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~ 116 (375)
T PRK09452 37 INNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKT 116 (375)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCC
Confidence 5689999999999999999987432 23322221 11235677888888777788999988653211
Q ss_pred ----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
.+...+|.. ...+..+..+|+|+++|+.++++++.++++++||| +.+|......+...++++
T Consensus 117 ~~~~~~~~~~~~l~~~~l~------~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l 190 (375)
T PRK09452 117 PAAEITPRVMEALRMVQLE------EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKAL 190 (375)
T ss_pred CHHHHHHHHHHHHHHcCCc------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 011112211 12356677899999999999999999999999999 666677777788888888
Q ss_pred HHhCCCCEEEEEcCccc-HHHHHhh
Q 004850 211 LKNRPDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~-~~~~~~~ 234 (727)
.+.. +..+|++||..+ +..+++.
T Consensus 191 ~~~~-g~tiI~vTHd~~ea~~laDr 214 (375)
T PRK09452 191 QRKL-GITFVFVTHDQEEALTMSDR 214 (375)
T ss_pred HHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 7654 789999999985 3445543
No 145
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.21 E-value=1.3e-11 Score=104.12 Aligned_cols=71 Identities=37% Similarity=0.450 Sum_probs=67.8
Q ss_pred CeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCcccccccc
Q 004850 312 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP 391 (727)
Q Consensus 312 ~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~p 391 (727)
++.+..+||+++..+|..+++.|..+ ..+|+++|+++++|+|+|++.+||.++. |
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~-------~~~vli~t~~~~~Gi~~~~~~~vi~~~~------------------~ 65 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNG-------KIKVLVATDVAERGLDLPGVDLVIIYDL------------------P 65 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcC-------CCeEEEECChhhCCcChhcCCEEEEeCC------------------C
Confidence 68899999999999999999999988 7799999999999999999999999998 9
Q ss_pred ccHhhHHhhhcccCCC
Q 004850 392 ISKASAHQRSGRAGRT 407 (727)
Q Consensus 392 is~~~~~qR~GRaGR~ 407 (727)
.+...|.||+||+||.
T Consensus 66 ~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 66 WSPASYIQRIGRAGRA 81 (82)
T ss_pred CCHHHHHHhhcccccC
Confidence 9999999999999996
No 146
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.21 E-value=1.8e-11 Score=124.28 Aligned_cols=142 Identities=20% Similarity=0.329 Sum_probs=98.1
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc------cccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++....
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 105 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPL 105 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHH
Confidence 5789999999999999999987432 122111110 01234567777766555567777765321
Q ss_pred c---c----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 141 D---V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 141 ~---~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
. . .....+|.. ...+..+..+|+|+++|+.++++++.+++++++|| +++|......+..
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 179 (216)
T TIGR00960 106 RIIGVPPRDANERVSAALEKVGLE------GKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMR 179 (216)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCh------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 0 0 011112211 11245667899999999999999999999999999 7888888888899
Q ss_pred HHHHHHHhCCCCEEEEEcCccc
Q 004850 206 LLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~ 227 (727)
+++++.+. +..+|++||.++
T Consensus 180 ~l~~~~~~--~~tii~vsH~~~ 199 (216)
T TIGR00960 180 LFEEFNRR--GTTVLVATHDIN 199 (216)
T ss_pred HHHHHHHC--CCEEEEEeCCHH
Confidence 98887543 678999999985
No 147
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.21 E-value=8.1e-10 Score=127.37 Aligned_cols=282 Identities=18% Similarity=0.185 Sum_probs=170.8
Q ss_pred HHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHH
Q 004850 59 LEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (727)
Q Consensus 59 l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (727)
.+.....++|..|.-....+..|+-..++||||.||||....+-+.-. ..+.+..+|+||..+..|+..-.+.++.
T Consensus 75 F~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a----~kgkr~yii~PT~~Lv~Q~~~kl~~~~e 150 (1187)
T COG1110 75 FKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA----KKGKRVYIIVPTTTLVRQVYERLKKFAE 150 (1187)
T ss_pred HHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH----hcCCeEEEEecCHHHHHHHHHHHHHHHh
Confidence 333444589999999999999999999999999999997654332211 1113456788888877666554444554
Q ss_pred hccccccceeceeeee---------ccccccCccccccChHHHHHHHhccccccCCeeEEeeccCc---ChhhHHHHHHH
Q 004850 139 EMDVTIGEEVGYSIRF---------EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHE---RTLATDVLFGL 206 (727)
Q Consensus 139 ~~~~~~~~~vg~~~~~---------~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEahe---r~~~~d~ll~l 206 (727)
..+ .....+.|.-.. +...+.+-.|.+.|..-+-...-.-. -.+++++++|.+|- .+-+.|-++.+
T Consensus 151 ~~~-~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~-~~kFdfifVDDVDA~LkaskNvDriL~L 228 (1187)
T COG1110 151 DAG-SLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS-KLKFDFIFVDDVDAILKASKNVDRLLRL 228 (1187)
T ss_pred hcC-CcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc-ccCCCEEEEccHHHHHhccccHHHHHHH
Confidence 444 222222232211 11122345566666665544332111 13799999999762 11223332222
Q ss_pred HH-----------------HHH---------------------HhCCCCEEEEEcCcccH-----HHHHhhhcCCCeeee
Q 004850 207 LK-----------------EVL---------------------KNRPDLKLVVMSATLEA-----EKFQGYFYGAPLMKV 243 (727)
Q Consensus 207 l~-----------------~l~---------------------~~~~~~~vil~SATl~~-----~~~~~~f~~~p~i~v 243 (727)
+- ++. ++...-++|++|||..+ ..|.+.++ -.+-..
T Consensus 229 lGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg-FevG~~ 307 (1187)
T COG1110 229 LGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG-FEVGSG 307 (1187)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC-CccCcc
Confidence 11 100 11234689999999953 34554443 111111
Q ss_pred CCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCC---HHHHHHHHHHHHHHHhhcCCCCCCeEEEEecC
Q 004850 244 PGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTG---EEEIEDACRKITKEITNMGDQVGPVKVVPLYS 320 (727)
Q Consensus 244 ~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~---~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~ 320 (727)
......|...|...+. .+..++ +...-.. ..|||+|. ++.++.++++|+.. ++.+...|+
T Consensus 308 ~~~LRNIvD~y~~~~~---~e~~~e----lvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~---------Gi~a~~~~a 370 (1187)
T COG1110 308 GEGLRNIVDIYVESES---LEKVVE----LVKKLGD-GGLIFVPIDYGREKAEELAEYLRSH---------GINAELIHA 370 (1187)
T ss_pred chhhhheeeeeccCcc---HHHHHH----HHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhc---------CceEEEeec
Confidence 1113345555554422 222222 2222233 47999999 88899999999874 799999998
Q ss_pred CCCHHHHhhhcCCCCCCCCCCCCCCcEEEEec----CccccCcccCCe-EEEEcCCCccce
Q 004850 321 TLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST----NIAETSLTIDGI-VYVIDPGFAKQK 376 (727)
Q Consensus 321 ~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaT----niAe~gitIp~V-~~VId~g~~k~~ 376 (727)
. ..+.++.|..| ...|+|.. +++-||||.|.. +|+|=+|.+|.+
T Consensus 371 ~-----~~~~le~F~~G-------eidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~r 419 (1187)
T COG1110 371 E-----KEEALEDFEEG-------EVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFR 419 (1187)
T ss_pred c-----chhhhhhhccC-------ceeEEEEecccccceeecCCchhheeEEEEecCCcee
Confidence 4 26678999999 78888864 578899999965 999999999765
No 148
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.21 E-value=1.3e-11 Score=125.89 Aligned_cols=156 Identities=23% Similarity=0.284 Sum_probs=105.7
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHH-----------HhcCc---cCCC-ccccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGV---DIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~---~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
.|.+|+.+++.||+||||||++..+ .+++. +... ....+.++++++..-.+.-++|+++++..+.
T Consensus 24 ~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~ 103 (345)
T COG1118 24 DIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLK 103 (345)
T ss_pred eecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhccc
Confidence 4669999999999999999998743 33333 1222 2234578889998888889999999987553
Q ss_pred cc--------ccceeceeeeecccc-ccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 142 VT--------IGEEVGYSIRFEDCS-SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 142 ~~--------~~~~vg~~~~~~~~~-~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
.. ....|..-.+.-+.. ..+..+..+|+|+.+|+.+++++...|++|+||| ..+|..-...+-..|.++
T Consensus 104 ~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~ 183 (345)
T COG1118 104 VRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKL 183 (345)
T ss_pred ccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHH
Confidence 22 001111001111111 1356788899999999999999999999999999 233333333455556665
Q ss_pred HHhCCCCEEEEEcCccc-HHHHHh
Q 004850 211 LKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
..+. +..++++||+.+ +..+++
T Consensus 184 ~~~~-~~ttvfVTHD~eea~~lad 206 (345)
T COG1118 184 HDRL-GVTTVFVTHDQEEALELAD 206 (345)
T ss_pred HHhh-CceEEEEeCCHHHHHhhcc
Confidence 5544 889999999984 445554
No 149
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.21 E-value=2.5e-11 Score=122.13 Aligned_cols=149 Identities=21% Similarity=0.266 Sum_probs=98.7
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCccccCceEEEEcccc-hhhhccHHHHHHHhccc--
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPR-RVAAMSVSRRVAEEMDV-- 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~~-- 142 (727)
.+..|+.++|+|+|||||||++..+. +++.++......+.+.++++.|. .....++.+++......
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~ 101 (205)
T cd03226 22 DLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD 101 (205)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC
Confidence 36789999999999999999987532 11111110011224556666653 23345777776432110
Q ss_pred -------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHh
Q 004850 143 -------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (727)
Q Consensus 143 -------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~ 213 (727)
.....+|.. ...+..+..+|+|+++++.++++++.+++++++|| +++|......+..+++++.+.
T Consensus 102 ~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 175 (205)
T cd03226 102 AGNEQAETVLKDLDLY------ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ 175 (205)
T ss_pred ccHHHHHHHHHHcCCc------hhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC
Confidence 011112211 11345677899999999999999999999999999 777788888889998887543
Q ss_pred CCCCEEEEEcCcccH-HHHHh
Q 004850 214 RPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 214 ~~~~~vil~SATl~~-~~~~~ 233 (727)
+..+|+.||.++. ..+++
T Consensus 176 --~~tii~~sH~~~~~~~~~d 194 (205)
T cd03226 176 --GKAVIVITHDYEFLAKVCD 194 (205)
T ss_pred --CCEEEEEeCCHHHHHHhCC
Confidence 6789999999853 33443
No 150
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.20 E-value=2.2e-11 Score=130.03 Aligned_cols=155 Identities=19% Similarity=0.281 Sum_probs=105.4
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC--ccccCceEEEEcccchhhhccHHHHHHHh---cc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEE---MD 141 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~---~~ 141 (727)
+..|++++++|||||||||++..+. +++.++.. ....+.+.++++.+......++.+++... .+
T Consensus 30 i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (306)
T PRK13537 30 VQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG 109 (306)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC
Confidence 5789999999999999999988543 11211111 01123567788777666667887776421 11
Q ss_pred ccc---cceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCC
Q 004850 142 VTI---GEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (727)
Q Consensus 142 ~~~---~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~ 215 (727)
... ...+......-+. ...++.+..+|.|+++++.++.+++.+|+++|||| +++|......+.++++++.+.
T Consensus 110 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~-- 187 (306)
T PRK13537 110 LSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR-- 187 (306)
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--
Confidence 100 0000000000011 12356778899999999999999999999999999 788888888899999988543
Q ss_pred CCEEEEEcCccc-HHHHHhh
Q 004850 216 DLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 216 ~~~vil~SATl~-~~~~~~~ 234 (727)
+.++|+.||.++ .+.++++
T Consensus 188 g~till~sH~l~e~~~~~d~ 207 (306)
T PRK13537 188 GKTILLTTHFMEEAERLCDR 207 (306)
T ss_pred CCEEEEECCCHHHHHHhCCE
Confidence 789999999996 4666654
No 151
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=3e-11 Score=122.93 Aligned_cols=148 Identities=21% Similarity=0.270 Sum_probs=100.2
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh-----------cCccCCCccccCceEEEEcccchhhhccHHHHHHHhcc---c
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD---V 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~---~ 142 (727)
.+.+|+.++|+|+|||||||++..+.= ++.++. .....+.++++.+......++.+++..... .
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 103 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT--GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGV 103 (220)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc--cccCcEEEEecccccccCCCHHHHHHHHHHHcCC
Confidence 357899999999999999999875431 111110 012345566776655555677776642211 0
Q ss_pred ----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
.....+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|......+.++++++
T Consensus 104 ~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~ 177 (220)
T cd03293 104 PKAEARERAEELLELVGLS------GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDI 177 (220)
T ss_pred CHHHHHHHHHHHHHHcCCh------hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 011111211 11245567899999999999999999999999999 788888888899999887
Q ss_pred HHhCCCCEEEEEcCccc-HHHHHh
Q 004850 211 LKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
.+.. +..+|+.||.++ ...+++
T Consensus 178 ~~~~-~~tiii~sH~~~~~~~~~d 200 (220)
T cd03293 178 WRET-GKTVLLVTHDIDEAVFLAD 200 (220)
T ss_pred HHHc-CCEEEEEecCHHHHHHhCC
Confidence 6543 678999999985 344443
No 152
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=2.9e-11 Score=132.31 Aligned_cols=150 Identities=22% Similarity=0.307 Sum_probs=108.1
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhccc---
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (727)
+..|+.++|.||+||||||++..+. +++.++.. +...+.+.++++++..+..+++.++++.....
T Consensus 42 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~ 121 (377)
T PRK11607 42 IYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKL 121 (377)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC
Confidence 5689999999999999999987432 22222211 12235678889888888888999998643211
Q ss_pred ----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
.+.+.+|.. ...+..+..+|+|+.+|+.++++++.+|++++||| +++|......+...++++
T Consensus 122 ~~~~~~~~v~~~l~~l~L~------~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 195 (377)
T PRK11607 122 PKAEIASRVNEMLGLVHMQ------EFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDI 195 (377)
T ss_pred CHHHHHHHHHHHHHHcCCc------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 011112211 12356677899999999999999999999999999 677777777788888887
Q ss_pred HHhCCCCEEEEEcCccc-HHHHHhh
Q 004850 211 LKNRPDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~-~~~~~~~ 234 (727)
.+.. +..+|+.||..+ +..+++.
T Consensus 196 ~~~~-g~tii~vTHd~~ea~~laDr 219 (377)
T PRK11607 196 LERV-GVTCVMVTHDQEEAMTMAGR 219 (377)
T ss_pred HHhc-CCEEEEEcCCHHHHHHhCCE
Confidence 7654 789999999985 3455543
No 153
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=3e-11 Score=122.36 Aligned_cols=150 Identities=21% Similarity=0.308 Sum_probs=99.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhccc--
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (727)
.+.+|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++......
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 101 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG 101 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcC
Confidence 36789999999999999999987432 11111111 00122455667666555456777766422110
Q ss_pred -----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 143 -----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 143 -----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
.....+|.. ...+..+..+|+|+++|+.++++++.+++++|+|| +++|......+.+++++
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 175 (213)
T cd03259 102 VPKAEIRARVRELLELVGLE------GLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKE 175 (213)
T ss_pred CCHHHHHHHHHHHHHHcCCh------hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 011111111 11245567899999999999999999999999999 77788888888999888
Q ss_pred HHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 210 VLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
+.+.. +..+|+.||.++ ...+++
T Consensus 176 ~~~~~-~~tii~~sH~~~~~~~~~d 199 (213)
T cd03259 176 LQREL-GITTIYVTHDQEEALALAD 199 (213)
T ss_pred HHHHc-CCEEEEEecCHHHHHHhcC
Confidence 76543 678999999885 344443
No 154
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.19 E-value=1.4e-10 Score=125.16 Aligned_cols=315 Identities=14% Similarity=0.087 Sum_probs=185.1
Q ss_pred HHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCC--------------ccccCc--eEEE
Q 004850 57 EILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET--------------PDRRRK--MMIA 120 (727)
Q Consensus 57 ~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~--------------~~~~~~--~~i~ 120 (727)
.+++.+.--.-+.+|.+++..+.+|+.+++.-.+-|||+|..-.--.+-..... .+..++ +.+-
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~ 356 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVE 356 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEE
Confidence 344444455678899999999999999999999999999965421111000000 000111 1111
Q ss_pred EcccchhhhccHHHHHHHhccccccceeceeeeeccccccCccccccChHHHHHHHhcccc-----ccCCeeEEeeccCc
Q 004850 121 CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-----LERYKVIVLDEAHE 195 (727)
Q Consensus 121 ~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l-----l~~~~~lIlDEahe 195 (727)
....+..+.....+...+... .. ....+.+..|.-+.+..-.+++..+ +-+..+++.||.|.
T Consensus 357 ~I~~~K~A~V~~~D~~sE~~~-~A------------~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~ 423 (1034)
T KOG4150|consen 357 VIKARKSAYVEMSDKLSETTK-SA------------LKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCAL 423 (1034)
T ss_pred ehhhhhcceeecccCCCchhH-HH------------HHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceee
Confidence 111122121111111100000 00 0011223344455555444444332 34456678888764
Q ss_pred ChhhHHH--------HHHHHHHHHHhCCCCEEEEEcCccc--HHHHHhhhcC--CCeeeeCCCccceeeeeccCC-----
Q 004850 196 RTLATDV--------LFGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYFYG--APLMKVPGRLHPVEIFYTQEP----- 258 (727)
Q Consensus 196 r~~~~d~--------ll~ll~~l~~~~~~~~vil~SATl~--~~~~~~~f~~--~p~i~v~g~~~~v~~~y~~~~----- 258 (727)
-..-... ++++++-+-. ..+++++-.|+|+. .....+.|+- ..++.+.|....-+++.+-.|
T Consensus 424 Y~~~~~~~~~~~~R~L~~L~~~F~~-~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~ 502 (1034)
T KOG4150|consen 424 YLFPTKALAQDQLRALSDLIKGFEA-SINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPT 502 (1034)
T ss_pred eecchhhHHHHHHHHHHHHHHHHHh-hcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCc
Confidence 2222221 2222222222 24899999999993 3445566543 446777776554444433221
Q ss_pred ----cccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCC
Q 004850 259 ----ERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPA 334 (727)
Q Consensus 259 ----~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~ 334 (727)
..+++......+.+... .+-..+.||+.+.-|+.+....++.+...+.+. --.+..+.|+-..++|.++-...
T Consensus 503 ~~~~~~~~i~E~s~~~~~~i~--~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~L-V~~i~SYRGGY~A~DRRKIE~~~ 579 (1034)
T KOG4150|consen 503 SKSEKSSKVVEVSHLFAEMVQ--HGLRCIAFCPSRKLCELVLCLTREILAETAPHL-VEAITSYRGGYIAEDRRKIESDL 579 (1034)
T ss_pred chhhhhhHHHHHHHHHHHHHH--cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHH-HHHHHhhcCccchhhHHHHHHHh
Confidence 12333333333444333 244789999999988877766665543332210 01366788999999999998776
Q ss_pred CCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEE
Q 004850 335 PPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCF 413 (727)
Q Consensus 335 ~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~ 413 (727)
=.| +-+-|+|||..|-||||.+++.|+.+|+ |-|.++.-|.+|||||- .+..+.
T Consensus 580 F~G-------~L~giIaTNALELGIDIG~LDAVl~~GF------------------P~S~aNl~QQ~GRAGRRNk~SLav 634 (1034)
T KOG4150|consen 580 FGG-------KLCGIIATNALELGIDIGHLDAVLHLGF------------------PGSIANLWQQAGRAGRRNKPSLAV 634 (1034)
T ss_pred hCC-------eeeEEEecchhhhccccccceeEEEccC------------------chhHHHHHHHhccccccCCCceEE
Confidence 667 7899999999999999999999999999 99999999999999999 555443
No 155
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.19 E-value=2.9e-11 Score=124.38 Aligned_cols=150 Identities=23% Similarity=0.326 Sum_probs=101.0
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc------cccCceEEEEcccchhhhccHHHHHHHh
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
.+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++...
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 101 (235)
T cd03261 22 DVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFP 101 (235)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHH
Confidence 36789999999999999999987543 122111110 0123455677766555556777776432
Q ss_pred ccc----c----------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHH
Q 004850 140 MDV----T----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (727)
Q Consensus 140 ~~~----~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (727)
... . ....+|.. ...+..+..+|+|+++|+.++++++.+++++|+|| +++|......+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l 175 (235)
T cd03261 102 LREHTRLSEEEIREIVLEKLEAVGLR------GAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVI 175 (235)
T ss_pred HhhccCCCHHHHHHHHHHHHHHcCCc------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 110 0 01111111 11245667899999999999999999999999999 77777778888
Q ss_pred HHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
..+++++.+.. +..+|++||.++ ...+++
T Consensus 176 ~~~l~~~~~~~-~~tvi~vsH~~~~~~~~~d 205 (235)
T cd03261 176 DDLIRSLKKEL-GLTSIMVTHDLDTAFAIAD 205 (235)
T ss_pred HHHHHHHHHhc-CcEEEEEecCHHHHHHhcC
Confidence 89998876543 678999999985 344443
No 156
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.19 E-value=3.3e-11 Score=131.92 Aligned_cols=150 Identities=15% Similarity=0.204 Sum_probs=105.2
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhccc--
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (727)
.+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+.....+++.+++......
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~ 104 (369)
T PRK11000 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG 104 (369)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC
Confidence 35689999999999999999987543 12211111 11123567788877766677888887643210
Q ss_pred -----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 143 -----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 143 -----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
.+...+|.. ...+..+..+|+|+++|+.++++++.++++++||| +++|......+...+++
T Consensus 105 ~~~~~~~~~~~~~l~~lgL~------~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~ 178 (369)
T PRK11000 105 AKKEEINQRVNQVAEVLQLA------HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR 178 (369)
T ss_pred CCHHHHHHHHHHHHHHcCCh------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 011112211 12355677899999999999999999999999999 77777778888888888
Q ss_pred HHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 210 VLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
+.+.. +..+|++||.++ ...+++
T Consensus 179 l~~~~-g~tvI~vTHd~~~~~~~~d 202 (369)
T PRK11000 179 LHKRL-GRTMIYVTHDQVEAMTLAD 202 (369)
T ss_pred HHHHh-CCEEEEEeCCHHHHHHhCC
Confidence 87654 679999999985 344444
No 157
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.19 E-value=3.8e-11 Score=121.37 Aligned_cols=156 Identities=17% Similarity=0.304 Sum_probs=101.7
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhccccc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (727)
.+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++........
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 99 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL 99 (211)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc
Confidence 46799999999999999999987442 11111111 0012345677777765555677777653211000
Q ss_pred c------ceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCC
Q 004850 145 G------EEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (727)
Q Consensus 145 ~------~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~ 215 (727)
. ..+......-+. ...+..+..+|+|+++++.++++++.+++++|+|| +++|....+.++.+++++.+..
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~- 178 (211)
T cd03298 100 KLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAET- 178 (211)
T ss_pred CccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-
Confidence 0 000000000011 11245667899999999999999999999999999 7777788888889988876543
Q ss_pred CCEEEEEcCcccH-HHHHh
Q 004850 216 DLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 216 ~~~vil~SATl~~-~~~~~ 233 (727)
+..+|++||.++. ..+++
T Consensus 179 ~~tii~~sH~~~~~~~~~d 197 (211)
T cd03298 179 KMTVLMVTHQPEDAKRLAQ 197 (211)
T ss_pred CCEEEEEecCHHHHHhhhC
Confidence 6889999999853 44443
No 158
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.19 E-value=3.6e-11 Score=130.60 Aligned_cols=150 Identities=23% Similarity=0.275 Sum_probs=106.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhccc---
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (727)
+..|+.++|+|||||||||++..+. +++.++.. ....+.+.++++.+.....+++.++++.....
T Consensus 25 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~ 104 (353)
T PRK10851 25 IPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPR 104 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccc
Confidence 5689999999999999999987433 23322211 11224577888887777778888888643211
Q ss_pred --------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHH
Q 004850 143 --------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (727)
Q Consensus 143 --------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~l 206 (727)
.....+|.. ...+..+..+|+|+.+|+.++++++.+++++++|| +++|......+...
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~L~------~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~ 178 (353)
T PRK10851 105 RERPNAAAIKAKVTQLLEMVQLA------HLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRW 178 (353)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCc------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 001111211 12356778899999999999999999999999999 67777777888888
Q ss_pred HHHHHHhCCCCEEEEEcCccc-HHHHHhh
Q 004850 207 LKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 207 l~~l~~~~~~~~vil~SATl~-~~~~~~~ 234 (727)
++++.+.. +..+|++||.++ +..+++.
T Consensus 179 L~~l~~~~-g~tii~vTHd~~ea~~~~Dr 206 (353)
T PRK10851 179 LRQLHEEL-KFTSVFVTHDQEEAMEVADR 206 (353)
T ss_pred HHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 88886653 789999999985 3555543
No 159
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.19 E-value=3.7e-11 Score=124.04 Aligned_cols=150 Identities=22% Similarity=0.334 Sum_probs=100.1
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc------cccCceEEEEcccchhhhccHHHHHHHh
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
.+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++...
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 102 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSG 102 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhh
Confidence 35789999999999999999987543 122111110 0122455666666555556777776432
Q ss_pred ccc---------------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcC
Q 004850 140 MDV---------------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHER 196 (727)
Q Consensus 140 ~~~---------------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher 196 (727)
... .....+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 176 (241)
T cd03256 103 RLGRRSTWRSLFGLFPKEEKQRALAALERVGLL------DKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLD 176 (241)
T ss_pred hcccchhhhhhcccCcHHHHHHHHHHHHHcCCh------hhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 100 000111110 11245667899999999999999999999999999 7777
Q ss_pred hhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 197 TLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 197 ~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
......+..+++++.+.. +..+|++||.++. ..+++
T Consensus 177 ~~~~~~l~~~l~~~~~~~-~~tii~~tH~~~~~~~~~d 213 (241)
T cd03256 177 PASSRQVMDLLKRINREE-GITVIVSLHQVDLAREYAD 213 (241)
T ss_pred HHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 788888888888876543 6789999999863 33443
No 160
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.18 E-value=3.9e-11 Score=121.52 Aligned_cols=149 Identities=20% Similarity=0.313 Sum_probs=99.5
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc------cccCceEEEEcccchhhhccHHHHHHHh
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
.+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++...
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 103 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALP 103 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHH
Confidence 36799999999999999999987432 111111110 0122455667666555456777766432
Q ss_pred c---cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHH
Q 004850 140 M---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (727)
Q Consensus 140 ~---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (727)
. +. .....+|.. ...+..+..+|+|+.+++.++++++.+++++|||| +++|......+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 177 (214)
T TIGR02673 104 LEVRGKKEREIQRRVGAALRQVGLE------HKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERIL 177 (214)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCh------hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHH
Confidence 1 00 011111111 11245567899999999999999999999999999 778888888899
Q ss_pred HHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
.+++++.+. +..+|++||.++ ...+++
T Consensus 178 ~~l~~~~~~--~~tii~~tH~~~~~~~~~d 205 (214)
T TIGR02673 178 DLLKRLNKR--GTTVIVATHDLSLVDRVAH 205 (214)
T ss_pred HHHHHHHHc--CCEEEEEeCCHHHHHHhcC
Confidence 999887543 678999999885 333443
No 161
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.18 E-value=2.9e-11 Score=120.21 Aligned_cols=151 Identities=21% Similarity=0.274 Sum_probs=109.0
Q ss_pred hhhcCCEEEEEcCCCChhhchhhH-----------HHhcCccCCCcc----ccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
.+..|++++++||||+||||+|.. +++++.++.... ...++.-.++.++.+.-++|.+++.-...
T Consensus 26 ~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~ 105 (250)
T COG0411 26 EVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAH 105 (250)
T ss_pred EEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhh
Confidence 357899999999999999999873 344554443311 12355556778888888999998854321
Q ss_pred cc-------------------------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cC
Q 004850 142 VT-------------------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AH 194 (727)
Q Consensus 142 ~~-------------------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--ah 194 (727)
.. +.+.||.. ...+.....++.|++.++-+++++..+|++|+||| |.
T Consensus 106 ~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~------~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAG 179 (250)
T COG0411 106 ARLGLSGLLGRPRARKEEREARERARELLEFVGLG------ELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAG 179 (250)
T ss_pred hhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc------hhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCC
Confidence 11 11112211 11234445699999999999999999999999999 88
Q ss_pred cChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHhh
Q 004850 195 ERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (727)
Q Consensus 195 er~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~~ 234 (727)
...-+.+.+.++++++.+.. +..++++-|.|+. -.++++
T Consensus 180 ln~~e~~~l~~~i~~i~~~~-g~tillIEHdM~~Vm~l~dr 219 (250)
T COG0411 180 LNPEETEELAELIRELRDRG-GVTILLIEHDMKLVMGLADR 219 (250)
T ss_pred CCHHHHHHHHHHHHHHHhcC-CcEEEEEEeccHHHhhhccE
Confidence 87888888999999987643 7999999999974 556554
No 162
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.17 E-value=4.3e-11 Score=129.34 Aligned_cols=156 Identities=18% Similarity=0.259 Sum_probs=105.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC--ccccCceEEEEcccchhhhccHHHHHHHhc---
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEM--- 140 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~--- 140 (727)
.+..|++++++|||||||||++..+. +++.+... ....+.+.++++.+......++.+++....
T Consensus 63 ~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~ 142 (340)
T PRK13536 63 TVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF 142 (340)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc
Confidence 36789999999999999999988543 12221111 111235677777766656677777764211
Q ss_pred ccc---ccceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhC
Q 004850 141 DVT---IGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNR 214 (727)
Q Consensus 141 ~~~---~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~ 214 (727)
+.. ....+.......+. ...+..+..+|+|+++++.++.+++.+|+++|||| +++|......+.++++++.+.
T Consensus 143 ~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~- 221 (340)
T PRK13536 143 GMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR- 221 (340)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-
Confidence 100 00000000000011 12356778899999999999999999999999999 788888888999999998653
Q ss_pred CCCEEEEEcCccc-HHHHHhh
Q 004850 215 PDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 215 ~~~~vil~SATl~-~~~~~~~ 234 (727)
+..+|+.||.++ .+.++++
T Consensus 222 -g~tilisSH~l~e~~~~~d~ 241 (340)
T PRK13536 222 -GKTILLTTHFMEEAERLCDR 241 (340)
T ss_pred -CCEEEEECCCHHHHHHhCCE
Confidence 789999999996 4566654
No 163
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=6.7e-11 Score=115.72 Aligned_cols=59 Identities=29% Similarity=0.424 Sum_probs=52.4
Q ss_pred cChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 167 LTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 167 lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
+|+|+++|+.++++++.+++++++|| +++|......+.++++++.++ +..+|++||..+
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiii~th~~~ 156 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE--GKTILLSSHILE 156 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC--CCEEEEECCCHH
Confidence 89999999999999999999999999 777777888888998887654 678999999875
No 164
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.17 E-value=4.9e-11 Score=129.37 Aligned_cols=149 Identities=23% Similarity=0.350 Sum_probs=103.4
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc--c----ccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP--D----RRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~--~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
+..|+.++|+|+|||||||++..+. +++.++... . ..+.+.++++++......++.+++....
T Consensus 28 i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~ 107 (343)
T PRK11153 28 IPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPL 107 (343)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHH
Confidence 5789999999999999999987432 222211110 0 1235677787776555678877775321
Q ss_pred c---c----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 141 D---V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 141 ~---~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
. . .....+|.. ...+..+..+|+|+++|+.++++++.+|+++++|| +++|......++.
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~gL~------~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~ 181 (343)
T PRK11153 108 ELAGTPKAEIKARVTELLELVGLS------DKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181 (343)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCc------hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 1 0 011112211 11345667899999999999999999999999999 7888888888999
Q ss_pred HHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+++++.+.. +..+|+.||.++. ..+++
T Consensus 182 ~L~~l~~~~-g~tiilvtH~~~~i~~~~d 209 (343)
T PRK11153 182 LLKDINREL-GLTIVLITHEMDVVKRICD 209 (343)
T ss_pred HHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 999886543 6899999999863 44443
No 165
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.17 E-value=5.4e-11 Score=122.20 Aligned_cols=145 Identities=19% Similarity=0.297 Sum_probs=99.3
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc------c-cCceEEEEcccchhhhccHHHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD------R-RRKMMIACTQPRRVAAMSVSRRVAE 138 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~------~-~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (727)
.+..|+.++|+|+|||||||++..+. +++.++.... . .+.+.++++.+......++.+++..
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 110 (233)
T PRK11629 31 SIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAM 110 (233)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHH
Confidence 35789999999999999999987432 2222221100 0 1346677777665555677777643
Q ss_pred hc---c----------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHH
Q 004850 139 EM---D----------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (727)
Q Consensus 139 ~~---~----------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (727)
.. + ......+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|......+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l 184 (233)
T PRK11629 111 PLLIGKKKPAEINSRALEMLAAVGLE------HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSI 184 (233)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCc------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Confidence 11 0 0111122211 11245667899999999999999999999999999 77777888888
Q ss_pred HHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
..+++++.+.. +..+|++||.++.
T Consensus 185 ~~~l~~~~~~~-g~tvii~sH~~~~ 208 (233)
T PRK11629 185 FQLLGELNRLQ-GTAFLVVTHDLQL 208 (233)
T ss_pred HHHHHHHHHhC-CCEEEEEeCCHHH
Confidence 88888876533 6899999999854
No 166
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.17 E-value=3.5e-11 Score=128.41 Aligned_cols=150 Identities=17% Similarity=0.262 Sum_probs=103.1
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc--cccCceEEEEcccchhhhccHHHHHHHhc---
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP--DRRRKMMIACTQPRRVAAMSVSRRVAEEM--- 140 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~~--- 140 (727)
.+..|++++++|||||||||++..+. +++.++... ...+.+.++++.+.....+++.+++....
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 94 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLY 94 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHc
Confidence 35789999999999999999987433 112111110 01224566777666556677777764311
Q ss_pred cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 141 DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 141 ~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
+. .+...+|.. ...+..+..+|+|+++|+.++.+++.+++++|||| +++|......+..+++
T Consensus 95 ~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 168 (302)
T TIGR01188 95 GLPKDEAEERAEELLELFELG------EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIR 168 (302)
T ss_pred CCCHHHHHHHHHHHHHHcCCh------hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 11 011112211 12356677899999999999999999999999999 7888888888999999
Q ss_pred HHHHhCCCCEEEEEcCccc-HHHHHhh
Q 004850 209 EVLKNRPDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~-~~~~~~~ 234 (727)
++.+. +..+|+.||.++ .+.+++.
T Consensus 169 ~~~~~--g~tvi~~sH~~~~~~~~~d~ 193 (302)
T TIGR01188 169 ALKEE--GVTILLTTHYMEEADKLCDR 193 (302)
T ss_pred HHHhC--CCEEEEECCCHHHHHHhCCE
Confidence 87543 689999999985 3555543
No 167
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.16 E-value=5.8e-11 Score=130.50 Aligned_cols=149 Identities=21% Similarity=0.345 Sum_probs=104.0
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc-------ccCceEEEEcccchhhhccHHHHHHHh
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD-------RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~-------~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
+..|+.++|+|+|||||||++..+. +++.++.... ..+.+.++++++......++.+++...
T Consensus 51 i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~ 130 (400)
T PRK10070 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFG 130 (400)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHH
Confidence 6789999999999999999987432 2222221100 013567778877666667888877532
Q ss_pred cc---c----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHH
Q 004850 140 MD---V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (727)
Q Consensus 140 ~~---~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (727)
.. . .....+|.. ...+..+..+|+|+.+|+.++++++.++++++||| +++|......+.
T Consensus 131 ~~~~~~~~~~~~~~~~e~L~~~gL~------~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~ 204 (400)
T PRK10070 131 MELAGINAEERREKALDALRQVGLE------NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQ 204 (400)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCC------hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHH
Confidence 11 0 111222221 12355677899999999999999999999999999 777888888888
Q ss_pred HHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
.+++++.+.. +..+|++||.++. ..+++
T Consensus 205 ~~L~~l~~~~-g~TIIivTHd~~~~~~~~D 233 (400)
T PRK10070 205 DELVKLQAKH-QRTIVFISHDLDEAMRIGD 233 (400)
T ss_pred HHHHHHHHHC-CCeEEEEECCHHHHHHhCC
Confidence 8888876543 6789999999853 34443
No 168
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.16 E-value=5.8e-11 Score=117.98 Aligned_cols=142 Identities=21% Similarity=0.359 Sum_probs=95.2
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc-----cccCceEEEEcccc-hhhhccHHHHHHHhc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-----DRRRKMMIACTQPR-RVAAMSVSRRVAEEM 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-----~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~ 140 (727)
+.+|+.++|+|+|||||||++..+. +++.++... ...+.+.+++++|. .....++.+++....
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~ 94 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGP 94 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHH
Confidence 6789999999999999999987432 222111100 01224556676663 233356766664321
Q ss_pred ---cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 141 ---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 141 ---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
+. .....+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|......+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~ 168 (190)
T TIGR01166 95 LNLGLSEAEVERRVREALTAVGAS------GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA 168 (190)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCch------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 00 011111211 12355677899999999999999999999999999 7778888888999
Q ss_pred HHHHHHHhCCCCEEEEEcCccc
Q 004850 206 LLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~ 227 (727)
+++++.+. +..+|++||.++
T Consensus 169 ~l~~~~~~--~~tili~sH~~~ 188 (190)
T TIGR01166 169 ILRRLRAE--GMTVVISTHDVD 188 (190)
T ss_pred HHHHHHHc--CCEEEEEeeccc
Confidence 99887543 679999999874
No 169
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.16 E-value=5.7e-11 Score=120.99 Aligned_cols=143 Identities=20% Similarity=0.330 Sum_probs=97.3
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc-------ccCceEEEEcccchhhhccHHHHHHHh
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD-------RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~-------~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
+..|+.++|+|+|||||||++..+. +++.++.... ..+.+.++++.+......++.+++...
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 107 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMP 107 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHH
Confidence 5689999999999999999987542 1221111100 012456677776555556777766431
Q ss_pred c---cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHH
Q 004850 140 M---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (727)
Q Consensus 140 ~---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (727)
. .. .....+|.. ...+..+..+|+|+.+++.++++++.+++++|||| +++|......+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~ 181 (221)
T TIGR02211 108 LLIGKKSVKEAKERAYEMLEKVGLE------HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF 181 (221)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCh------hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHH
Confidence 1 00 011111111 11245567899999999999999999999999999 777878888888
Q ss_pred HHHHHHHHhCCCCEEEEEcCccc
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~ 227 (727)
.+++++.+.. +..+|+.||.++
T Consensus 182 ~~l~~~~~~~-~~tii~~tH~~~ 203 (221)
T TIGR02211 182 DLMLELNREL-NTSFLVVTHDLE 203 (221)
T ss_pred HHHHHHHHhc-CCEEEEEeCCHH
Confidence 9888876543 678999999985
No 170
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.16 E-value=5.5e-11 Score=129.46 Aligned_cols=149 Identities=20% Similarity=0.277 Sum_probs=103.5
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-------ccccCceEEEEcccchhhhccHHHHHHHh
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-------PDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
+..|+.++|+|||||||||++..+. +++.++.. ....+.+.++++.+......++.+++...
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~ 100 (352)
T PRK11144 21 LPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYG 100 (352)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhh
Confidence 5789999999999999999987432 22221111 01123566777777666667888877532
Q ss_pred cc-------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 140 MD-------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 140 ~~-------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
.. ..+...+|.. ...+..+..+|+|+.+|+.++++++.++++++||| +++|......+...++++
T Consensus 101 ~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l 174 (352)
T PRK11144 101 MAKSMVAQFDKIVALLGIE------PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERL 174 (352)
T ss_pred hhhhhHHHHHHHHHHcCCc------hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 11 1112222221 12355677899999999999999999999999999 677777788888899888
Q ss_pred HHhCCCCEEEEEcCccc-HHHHHh
Q 004850 211 LKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
.+.. +..+|++||.++ ...+++
T Consensus 175 ~~~~-g~tii~vTHd~~~~~~~~d 197 (352)
T PRK11144 175 AREI-NIPILYVSHSLDEILRLAD 197 (352)
T ss_pred HHhc-CCeEEEEecCHHHHHHhCC
Confidence 6643 678999999985 344444
No 171
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.16 E-value=6.3e-11 Score=121.25 Aligned_cols=144 Identities=21% Similarity=0.296 Sum_probs=97.7
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc-------ccCceEEEEcccchhhhccHHHHHHHh
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD-------RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~-------~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
+..|++++|+|+|||||||++..+. +++.++.... ..+.+.++++.+......++.+++...
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~ 112 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELP 112 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHH
Confidence 5689999999999999999987443 1221111100 012456677776555556777766432
Q ss_pred c---cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHH
Q 004850 140 M---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (727)
Q Consensus 140 ~---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (727)
. +. .....+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|......+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~ 186 (228)
T PRK10584 113 ALLRGESSRQSRNGAKALLEQLGLG------KRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIA 186 (228)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCH------hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 1 00 001111111 11245567899999999999999999999999999 777778888889
Q ss_pred HHHHHHHHhCCCCEEEEEcCcccH
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
.+++++.+.. +..+|+.||..+.
T Consensus 187 ~~l~~~~~~~-~~tii~~sH~~~~ 209 (228)
T PRK10584 187 DLLFSLNREH-GTTLILVTHDLQL 209 (228)
T ss_pred HHHHHHHHhc-CCEEEEEecCHHH
Confidence 9998876543 6789999999863
No 172
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.15 E-value=4.7e-11 Score=123.40 Aligned_cols=145 Identities=21% Similarity=0.304 Sum_probs=97.2
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc------cccCceEEEEcccchhhhccHHHHHHHh
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
.+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++...
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 103 (243)
T TIGR02315 24 NINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHG 103 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhc
Confidence 35789999999999999999987432 111111110 0122355666666555556777766421
Q ss_pred ccc---------------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcC
Q 004850 140 MDV---------------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHER 196 (727)
Q Consensus 140 ~~~---------------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher 196 (727)
... .....+|.. ...+..+..+|+|+.+|+.++++++.+++++|+|| +++|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 177 (243)
T TIGR02315 104 RLGYKPTWRSLLGRFSEEDKERALSALERVGLA------DKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLD 177 (243)
T ss_pred ccccccchhhhhccccHHHHHHHHHHHHHcCcH------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 100 000111110 11245667899999999999999999999999999 6777
Q ss_pred hhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 197 TLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 197 ~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
......+..+++++.+.. +..+|+.||.++.
T Consensus 178 ~~~~~~l~~~l~~~~~~~-~~tiii~tH~~~~ 208 (243)
T TIGR02315 178 PKTSKQVMDYLKRINKED-GITVIINLHQVDL 208 (243)
T ss_pred HHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHH
Confidence 777888888888876543 6789999998853
No 173
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=6.5e-11 Score=122.11 Aligned_cols=156 Identities=21% Similarity=0.208 Sum_probs=100.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc-cccCceEEEEcccchhhhccHHHHHHHhcccc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-DRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT- 143 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~- 143 (727)
.+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.|......++.+++.......
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 103 (239)
T cd03296 24 DIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKP 103 (239)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhcc
Confidence 35689999999999999999987532 122111110 11234566777766555567777764321100
Q ss_pred c---------cceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHH
Q 004850 144 I---------GEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (727)
Q Consensus 144 ~---------~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~ 211 (727)
. ...+......-+. ...+..+..+|+|+++++.++++++.+++++|+|| +++|......+.++++++.
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 183 (239)
T cd03296 104 RSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH 183 (239)
T ss_pred ccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 0 0000000000001 11245667899999999999999999999999999 7777788888888888876
Q ss_pred HhCCCCEEEEEcCcccH-HHHHh
Q 004850 212 KNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 212 ~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+.. +..+|++||.++. ..+++
T Consensus 184 ~~~-~~tvii~sH~~~~~~~~~d 205 (239)
T cd03296 184 DEL-HVTTVFVTHDQEEALEVAD 205 (239)
T ss_pred HHc-CCEEEEEeCCHHHHHHhCC
Confidence 543 6789999999853 34443
No 174
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.15 E-value=7.3e-11 Score=119.59 Aligned_cols=143 Identities=20% Similarity=0.223 Sum_probs=95.5
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCccccCceEEEEcccchhhhccHHHHHHHhcc---c
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD---V 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~---~ 142 (727)
.+..|+.++|+|+|||||||++..+. +++..+......+.+.++++.+......++.+++..... .
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~ 112 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGR 112 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCC
Confidence 35789999999999999999987543 111111111111234556655544444567666532211 0
Q ss_pred c-------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHh
Q 004850 143 T-------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (727)
Q Consensus 143 ~-------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~ 213 (727)
. ....+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..+++++.+.
T Consensus 113 ~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (214)
T PRK13543 113 RAKQMPGSALAIVGLA------GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG 186 (214)
T ss_pred cHHHHHHHHHHHcCCh------hhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 0 01111111 11356677899999999999999999999999999 777777788888888887543
Q ss_pred CCCCEEEEEcCccc
Q 004850 214 RPDLKLVVMSATLE 227 (727)
Q Consensus 214 ~~~~~vil~SATl~ 227 (727)
+..+|+.||.++
T Consensus 187 --~~tiii~sH~~~ 198 (214)
T PRK13543 187 --GGAALVTTHGAY 198 (214)
T ss_pred --CCEEEEEecChh
Confidence 678999999885
No 175
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.15 E-value=5.4e-11 Score=130.78 Aligned_cols=155 Identities=18% Similarity=0.218 Sum_probs=103.0
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhccc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (727)
+.+|+.++++|||||||||++..+. +++.++.. ....+.+.++++++.....+++.+.+...+..
T Consensus 26 i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~ 105 (402)
T PRK09536 26 VREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPH 105 (402)
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchh
Confidence 5799999999999999999987532 22221111 11123456677766555667777776432110
Q ss_pred --ccc-------ceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 143 --TIG-------EEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 143 --~~~-------~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
... ..+......-+. ...+..+..+|+|+++|+.++++++.+|+++|||| +++|......++.+++++
T Consensus 106 ~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l 185 (402)
T PRK09536 106 RSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRL 185 (402)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 000 000000000011 11345677899999999999999999999999999 788888888899999998
Q ss_pred HHhCCCCEEEEEcCcccH-HHHHhh
Q 004850 211 LKNRPDLKLVVMSATLEA-EKFQGY 234 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~~-~~~~~~ 234 (727)
.+. +..+|+.||.++. ..+++.
T Consensus 186 ~~~--g~TIIivsHdl~~~~~~adr 208 (402)
T PRK09536 186 VDD--GKTAVAAIHDLDLAARYCDE 208 (402)
T ss_pred Hhc--CCEEEEEECCHHHHHHhCCE
Confidence 653 6799999999863 455543
No 176
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=7e-11 Score=121.37 Aligned_cols=149 Identities=21% Similarity=0.353 Sum_probs=100.3
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc------cccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++....
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~ 107 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPL 107 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHH
Confidence 5789999999999999999987432 222211110 01234566777766555567777764321
Q ss_pred c---cc----------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 141 D---VT----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 141 ~---~~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
. .. ....+|.. ...+..+..+|+|+++++.++++++.+++++|||| +++|......+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~ 181 (233)
T cd03258 108 EIAGVPKAEIEERVLELLELVGLE------DKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILA 181 (233)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCh------hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHH
Confidence 1 00 01111111 11245567899999999999999999999999999 6777777888888
Q ss_pred HHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+++++.+.. +..+|++||..+. ..+++
T Consensus 182 ~l~~~~~~~-~~tvii~sH~~~~~~~~~d 209 (233)
T cd03258 182 LLRDINREL-GLTIVLITHEMEVVKRICD 209 (233)
T ss_pred HHHHHHHHc-CCEEEEEeCCHHHHHHhCC
Confidence 888876543 6789999998753 34443
No 177
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=7.3e-11 Score=116.03 Aligned_cols=60 Identities=23% Similarity=0.340 Sum_probs=52.7
Q ss_pred cChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 167 LTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 167 lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
+|+|+.+|+.++++++.+++++|+|| ++.|......+..+++++.+.. +..+|+.||..+
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~ 162 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQL-GITVVLVTHDLD 162 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 99999999999999999999999999 7777788888889888876542 578999999875
No 178
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.14 E-value=8.4e-11 Score=118.36 Aligned_cols=143 Identities=20% Similarity=0.279 Sum_probs=96.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc-------cccCceEEEEcccchhhhccHHHHHHHh
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-------DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-------~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++...
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~ 100 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLG 100 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHH
Confidence 5789999999999999999987443 111111100 0123455666666555556777665431
Q ss_pred cc-------------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHH
Q 004850 140 MD-------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (727)
Q Consensus 140 ~~-------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (727)
.. ......+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|....+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~ 174 (206)
T TIGR03608 101 LKYKKLSKKEKREKKKEALEKVGLN------LKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVL 174 (206)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCch------hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHH
Confidence 10 0011112211 12245667899999999999999999999999999 777777888889
Q ss_pred HHHHHHHHhCCCCEEEEEcCcccH
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
.+++++.+. +..+|++||.++.
T Consensus 175 ~~l~~~~~~--~~tii~~sh~~~~ 196 (206)
T TIGR03608 175 DLLLELNDE--GKTIIIVTHDPEV 196 (206)
T ss_pred HHHHHHHhc--CCEEEEEeCCHHH
Confidence 998887543 6899999999853
No 179
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.14 E-value=1.8e-10 Score=125.37 Aligned_cols=150 Identities=20% Similarity=0.294 Sum_probs=106.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhc-------C------ccCCC-ccccCceEEEEcccchhhhccHHHHHHHhccc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLE-------G------VDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~-------~------~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (727)
+..|+.++++||+||||||++..+.=. + .++.. +...+.+.++++.+.....+++.++++.....
T Consensus 28 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~ 107 (362)
T TIGR03258 28 IEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ 107 (362)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc
Confidence 568999999999999999998754311 1 11111 11234677888888777778999988643211
Q ss_pred ------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 143 ------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 143 ------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
.+.+.+|.. ...+..+..+|+|+++|+.++++++.++++++||| +.+|......+...++
T Consensus 108 ~~~~~~~~~~v~~~l~~~gL~------~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~ 181 (362)
T TIGR03258 108 KMPKADIAERVADALKLVGLG------DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIA 181 (362)
T ss_pred CCCHHHHHHHHHHHHHhcCCC------chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 111122211 12356778899999999999999999999999999 6777777888888888
Q ss_pred HHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 209 EVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
++.+...+.++|++||.++ +..+++
T Consensus 182 ~l~~~~~g~til~vTHd~~ea~~l~d 207 (362)
T TIGR03258 182 ALHEELPELTILCVTHDQDDALTLAD 207 (362)
T ss_pred HHHHhCCCCEEEEEeCCHHHHHHhCC
Confidence 8876533689999999985 344554
No 180
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.14 E-value=7.6e-11 Score=119.34 Aligned_cols=143 Identities=18% Similarity=0.254 Sum_probs=96.7
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc-cccCceEEEEcccchhhhccHHHHHHHhc---cc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-DRRRKMMIACTQPRRVAAMSVSRRVAEEM---DV 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~~ 142 (727)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++.... +.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 102 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKV 102 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCC
Confidence 5789999999999999999987433 111111110 01124556666665444567777664321 00
Q ss_pred ----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
.....+|.. ...+..+..+|+|+.+++.++++++.+++++++|| +++|......+..+++++
T Consensus 103 ~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 176 (213)
T cd03301 103 PKDEIDERVREVAELLQIE------HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRL 176 (213)
T ss_pred CHHHHHHHHHHHHHHcCCH------HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 001111111 11345667899999999999999999999999999 777777788888888887
Q ss_pred HHhCCCCEEEEEcCccc
Q 004850 211 LKNRPDLKLVVMSATLE 227 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~ 227 (727)
..+. +..+|+.||.++
T Consensus 177 ~~~~-~~tvi~~sH~~~ 192 (213)
T cd03301 177 QQRL-GTTTIYVTHDQV 192 (213)
T ss_pred HHHc-CCEEEEEeCCHH
Confidence 6543 678999999885
No 181
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=6.7e-11 Score=119.49 Aligned_cols=147 Identities=16% Similarity=0.266 Sum_probs=98.2
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh-----------cCccCCCccccCceEEEEcccchhhhccHHHHHHHhc---cc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM---DV- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~~- 142 (727)
+..|+.++|+|+|||||||++..+.= ++.++.. ...+.+.++++.+......++.+++.... +.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 101 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLK 101 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCC
Confidence 57899999999999999999875431 1111100 11234556676665555567777664321 10
Q ss_pred ---------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHH
Q 004850 143 ---------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (727)
Q Consensus 143 ---------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~ 211 (727)
.....+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| ++.|......+..+++++.
T Consensus 102 ~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~ 175 (210)
T cd03269 102 KEEARRRIDEWLERLELS------EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELA 175 (210)
T ss_pred hHHHHHHHHHHHHHcCCh------HHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 001111111 11245567899999999999999999999999999 6777777888888888875
Q ss_pred HhCCCCEEEEEcCcccH-HHHHh
Q 004850 212 KNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 212 ~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+. +..+|+.||..+. ..+++
T Consensus 176 ~~--~~tii~~sH~~~~~~~~~d 196 (210)
T cd03269 176 RA--GKTVILSTHQMELVEELCD 196 (210)
T ss_pred HC--CCEEEEECCCHHHHHHhhh
Confidence 43 6789999999853 34443
No 182
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.14 E-value=5.9e-11 Score=120.62 Aligned_cols=148 Identities=18% Similarity=0.307 Sum_probs=100.2
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC--ccccCceEEEEcccchhhhccHHHHHHHhcc---
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD--- 141 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~--- 141 (727)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++.....
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 107 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG 107 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC
Confidence 5689999999999999999987443 11111110 0112345667777755555677777643211
Q ss_pred c----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 142 V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 142 ~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
. .....+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|......+..++++
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 181 (218)
T cd03266 108 LKGDELTARLEELADRLGME------ELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQ 181 (218)
T ss_pred CCHHHHHHHHHHHHHHcCCH------HHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 0 011112211 11245667899999999999999999999999999 77888888889999988
Q ss_pred HHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 210 VLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
+.+. +..+|++||..+ ...+++
T Consensus 182 ~~~~--~~tii~~tH~~~~~~~~~d 204 (218)
T cd03266 182 LRAL--GKCILFSTHIMQEVERLCD 204 (218)
T ss_pred HHHC--CCEEEEEeCCHHHHHHhcC
Confidence 7543 679999999885 344443
No 183
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=7.4e-11 Score=120.07 Aligned_cols=150 Identities=19% Similarity=0.298 Sum_probs=99.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC--ccccCceEEEEcccchhhhccHHHHHHHhc---
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEM--- 140 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~--- 140 (727)
.+.+|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++....
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 101 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY 101 (220)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc
Confidence 35689999999999999999988543 11111110 001124556666665555567777664321
Q ss_pred cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 141 DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 141 ~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
+. .....+|.. ...+..+..+|+|+++|+.++++++.+++++|+|| +++|......+..+++
T Consensus 102 ~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 175 (220)
T cd03265 102 GVPGAERRERIDELLDFVGLL------EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIE 175 (220)
T ss_pred CCCHHHHHHHHHHHHHHcCCH------HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHH
Confidence 10 001111111 11345677899999999999999999999999999 6777777888888888
Q ss_pred HHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 209 EVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
++.+.. +..+|+.||.++. ..+++
T Consensus 176 ~~~~~~-~~tvi~~tH~~~~~~~~~d 200 (220)
T cd03265 176 KLKEEF-GMTILLTTHYMEEAEQLCD 200 (220)
T ss_pred HHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 876543 6789999998853 44443
No 184
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.14 E-value=9.3e-11 Score=114.72 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=52.9
Q ss_pred cChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 167 LTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 167 lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
+|+|+.+++.++++++.+++++|+|| +++|......+.++++++.+. +..+|++||..+.
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~sh~~~~ 158 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAA--GATRIVIAHRPET 158 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHH
Confidence 99999999999999999999999999 777778888888999887543 6789999998853
No 185
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.13 E-value=3e-11 Score=116.09 Aligned_cols=162 Identities=19% Similarity=0.251 Sum_probs=96.8
Q ss_pred HHHHHhhhcCCEEEEEcCCCChhhchhhHH-----------HhcCccCCC-c-cccCceEEEEcccchhhhccHHHHH--
Q 004850 72 EEFLQVLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-P-DRRRKMMIACTQPRRVAAMSVSRRV-- 136 (727)
Q Consensus 72 ~~ii~~i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~~~-~-~~~~~~~i~~t~p~~~~~~~v~~~v-- 136 (727)
.++--.+++|+++++.|+||+||||++.-+ ++++.+... + .-.+.+++++-+--...-+++.+++
T Consensus 19 rdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~ 98 (245)
T COG4555 19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKY 98 (245)
T ss_pred hheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHH
Confidence 344445789999999999999999988732 122222111 1 1233455555222222233444433
Q ss_pred -HHhcccccc---ceec-eeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 137 -AEEMDVTIG---EEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 137 -~~~~~~~~~---~~vg-~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
+.-.+..-. ..+. ...+++-....+++.--.|.|+.+++.++++++.+|+++|+|| .++|......+.+.+++
T Consensus 99 Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q 178 (245)
T COG4555 99 FARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ 178 (245)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHH
Confidence 221111000 0000 0011111123456677799999999999999999999999999 45555556666777666
Q ss_pred HHHhCCCCEEEEEcCccc-HHHHHhhh
Q 004850 210 VLKNRPDLKLVVMSATLE-AEKFQGYF 235 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~-~~~~~~~f 235 (727)
+. .+++.+|+.||.|+ ++.+++.+
T Consensus 179 ~k--~egr~viFSSH~m~EvealCDrv 203 (245)
T COG4555 179 LK--NEGRAVIFSSHIMQEVEALCDRV 203 (245)
T ss_pred hh--cCCcEEEEecccHHHHHHhhheE
Confidence 53 34889999999994 67677654
No 186
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.13 E-value=7e-11 Score=124.68 Aligned_cols=146 Identities=21% Similarity=0.289 Sum_probs=100.0
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccc-hhhhccHHHHHHHhc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPR-RVAAMSVSRRVAEEM- 140 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~- 140 (727)
.+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.+++++|. .+...++.+++....
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~ 108 (279)
T PRK13650 29 HVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLE 108 (279)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHH
Confidence 35789999999999999999988432 22222211 011234567777763 444567777764321
Q ss_pred --cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHH
Q 004850 141 --DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (727)
Q Consensus 141 --~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~l 206 (727)
+. .....+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|......++.+
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~gL~------~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~ 182 (279)
T PRK13650 109 NKGIPHEEMKERVNEALELVGMQ------DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKT 182 (279)
T ss_pred hCCCCHHHHHHHHHHHHHHCCCH------hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 00 011111211 11345667899999999999999999999999999 77777778888898
Q ss_pred HHHHHHhCCCCEEEEEcCcccHH
Q 004850 207 LKEVLKNRPDLKLVVMSATLEAE 229 (727)
Q Consensus 207 l~~l~~~~~~~~vil~SATl~~~ 229 (727)
++++.+.. +.++|++||.++..
T Consensus 183 l~~l~~~~-g~tilivtH~~~~~ 204 (279)
T PRK13650 183 IKGIRDDY-QMTVISITHDLDEV 204 (279)
T ss_pred HHHHHHhc-CCEEEEEecCHHHH
Confidence 88886543 78999999998643
No 187
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.13 E-value=8.1e-11 Score=125.73 Aligned_cols=150 Identities=17% Similarity=0.247 Sum_probs=102.4
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc--cccCceEEEEcccchhhhccHHHHHHHh---c
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP--DRRRKMMIACTQPRRVAAMSVSRRVAEE---M 140 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~---~ 140 (727)
.+..|+.++++|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++... .
T Consensus 26 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 105 (303)
T TIGR01288 26 TIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF 105 (303)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc
Confidence 35789999999999999999987543 111111110 0123456677776555556777776421 1
Q ss_pred ccc----------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 141 DVT----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 141 ~~~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
+.. +...+|.. ...+..+..+|+|+++|+.++++++.+++++|||| +++|......+..+++
T Consensus 106 ~~~~~~~~~~~~~ll~~~~l~------~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 179 (303)
T TIGR01288 106 GMSTREIEAVIPSLLEFARLE------SKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLR 179 (303)
T ss_pred CCCHHHHHHHHHHHHHHCCCh------hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 100 01111111 12356677899999999999999999999999999 7888888888999999
Q ss_pred HHHHhCCCCEEEEEcCccc-HHHHHhh
Q 004850 209 EVLKNRPDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~-~~~~~~~ 234 (727)
++.+. +..+|+.||.++ ...+++.
T Consensus 180 ~~~~~--g~til~~sH~~~~~~~~~d~ 204 (303)
T TIGR01288 180 SLLAR--GKTILLTTHFMEEAERLCDR 204 (303)
T ss_pred HHHhC--CCEEEEECCCHHHHHHhCCE
Confidence 88543 789999999985 3445543
No 188
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.13 E-value=1.1e-10 Score=120.26 Aligned_cols=149 Identities=21% Similarity=0.256 Sum_probs=97.5
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc----ccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
.+..|+.++|+|+|||||||++..+. +++.++.... ....+.++++.+......++.+++.....
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~ 101 (236)
T cd03219 22 SVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQ 101 (236)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHh
Confidence 35789999999999999999987432 1111111100 01235567777665556677777643211
Q ss_pred ccc----------------cceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHH
Q 004850 142 VTI----------------GEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (727)
Q Consensus 142 ~~~----------------~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (727)
... ...+......-+. ...+..+..+|+|+++++.++++++.+++++|+|| +++|......
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 181 (236)
T cd03219 102 ARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEE 181 (236)
T ss_pred hccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 000 0000000000001 12345677899999999999999999999999999 7777777788
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 203 LFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 203 ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
+..+++++.+ . +..+|++||.++
T Consensus 182 l~~~l~~~~~-~-~~tii~vsH~~~ 204 (236)
T cd03219 182 LAELIRELRE-R-GITVLLVEHDMD 204 (236)
T ss_pred HHHHHHHHHH-C-CCEEEEEecCHH
Confidence 8888888765 2 678999999885
No 189
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.13 E-value=8.9e-11 Score=122.20 Aligned_cols=150 Identities=18% Similarity=0.262 Sum_probs=100.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcC----ccC--CC---ccccCceEEEEcccchhhhccHHHHHHHhcc------
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEG----VDI--ET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD------ 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~----~~~--~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~------ 141 (727)
.+..|+.++|+|+|||||||++..+.=.. ..+ .. ....+.+.++++.+......++.+++.....
T Consensus 34 ~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~ 113 (257)
T PRK11247 34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDA 113 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHH
Confidence 35789999999999999999988543110 000 00 0011245566766655555677777643210
Q ss_pred -ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCE
Q 004850 142 -VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLK 218 (727)
Q Consensus 142 -~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~ 218 (727)
......+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..+++++.+.. +..
T Consensus 114 ~~~~l~~~gl~------~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-~~t 186 (257)
T PRK11247 114 ALQALAAVGLA------DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH-GFT 186 (257)
T ss_pred HHHHHHHcCCh------hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHc-CCE
Confidence 0111222221 11245667899999999999999999999999999 7788888888889998876543 678
Q ss_pred EEEEcCcccH-HHHHh
Q 004850 219 LVVMSATLEA-EKFQG 233 (727)
Q Consensus 219 vil~SATl~~-~~~~~ 233 (727)
+|++||.++. ..+++
T Consensus 187 viivsHd~~~~~~~~d 202 (257)
T PRK11247 187 VLLVTHDVSEAVAMAD 202 (257)
T ss_pred EEEEeCCHHHHHHhCC
Confidence 9999999863 44443
No 190
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.13 E-value=1e-10 Score=122.81 Aligned_cols=150 Identities=20% Similarity=0.290 Sum_probs=100.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc-------ccCceEEEEcccchhhhccHHHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD-------RRRKMMIACTQPRRVAAMSVSRRVAE 138 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~-------~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (727)
.+..|+.++|+|+|||||||++..+. +++.++.... ....+.++++.+......++.+++..
T Consensus 46 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 125 (269)
T cd03294 46 DVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAF 125 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHH
Confidence 36799999999999999999987432 1221111100 01245667776655555677777643
Q ss_pred hccc-------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHH
Q 004850 139 EMDV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (727)
Q Consensus 139 ~~~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (727)
.... .....+|.. ...+..+..+|+|+.+++.++++++.+++++|||| +++|......+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l 199 (269)
T cd03294 126 GLEVQGVPRAEREERAAEALELVGLE------GWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREM 199 (269)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCH------hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 2110 011111211 11355667899999999999999999999999999 77777888888
Q ss_pred HHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
..+++++.+.. +..+|++||.++. ..+++
T Consensus 200 ~~~l~~~~~~~-g~tiii~tH~~~~~~~~~d 229 (269)
T cd03294 200 QDELLRLQAEL-QKTIVFITHDLDEALRLGD 229 (269)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHHHHHHhcC
Confidence 99888876543 6789999999853 44443
No 191
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.12 E-value=1e-10 Score=120.46 Aligned_cols=144 Identities=17% Similarity=0.320 Sum_probs=97.2
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC--ccccCceEEEEcccchhhhccHHHHHHHhccc--
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (727)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++......
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 103 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHG 103 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcC
Confidence 5689999999999999999987543 11111111 00112455666665544556676666432110
Q ss_pred -----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 143 -----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 143 -----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
.....+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|....+.+..++++
T Consensus 104 ~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 177 (236)
T TIGR03864 104 LSRAEARERIAALLARLGLA------ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRA 177 (236)
T ss_pred CCHHHHHHHHHHHHHHcCCh------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 011111211 11356677899999999999999999999999999 67777888888898888
Q ss_pred HHHhCCCCEEEEEcCcccH
Q 004850 210 VLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~ 228 (727)
+.+.. +..+|++||.++.
T Consensus 178 ~~~~~-~~tiii~sH~~~~ 195 (236)
T TIGR03864 178 LCRDQ-GLSVLWATHLVDE 195 (236)
T ss_pred HHHhC-CCEEEEEecChhh
Confidence 76543 6789999999864
No 192
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.12 E-value=8.4e-11 Score=119.11 Aligned_cols=142 Identities=26% Similarity=0.339 Sum_probs=96.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc------cccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++....
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~ 103 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFAL 103 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHH
Confidence 5689999999999999999987443 111111110 01224566777766555567777764321
Q ss_pred ---cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 141 ---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 141 ---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
+. .....+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|....+.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~ 177 (214)
T cd03292 104 EVTGVPPREIRKRVPAALELVGLS------HKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMN 177 (214)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCH------HHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 10 001111111 11245567899999999999999999999999999 7778888888999
Q ss_pred HHHHHHHhCCCCEEEEEcCccc
Q 004850 206 LLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~ 227 (727)
.++++.+. +..+|++||..+
T Consensus 178 ~l~~~~~~--~~tiiivtH~~~ 197 (214)
T cd03292 178 LLKKINKA--GTTVVVATHAKE 197 (214)
T ss_pred HHHHHHHc--CCEEEEEeCCHH
Confidence 99887543 678999999875
No 193
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.12 E-value=1.1e-10 Score=127.35 Aligned_cols=149 Identities=21% Similarity=0.275 Sum_probs=102.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc-------cccCceEEEEcccchhhhccHHHHHHHh
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-------DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-------~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++...
T Consensus 20 i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~ 99 (354)
T TIGR02142 20 LPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYG 99 (354)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHH
Confidence 5789999999999999999987432 222211110 1123466777777666667888877532
Q ss_pred ccc-----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHH
Q 004850 140 MDV-----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (727)
Q Consensus 140 ~~~-----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~l 206 (727)
... .+...+|.. ...+..+..+|+|+++|+.++++++.++++++||| +++|......+..+
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~gL~------~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~ 173 (354)
T TIGR02142 100 MKRARPSERRISFERVIELLGIG------HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPY 173 (354)
T ss_pred hhccChhHHHHHHHHHHHHcCCh------hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 110 011111111 12355677899999999999999999999999999 77777888888999
Q ss_pred HHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 207 LKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 207 l~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
++++.+.. +..+|++||.++. ..+++
T Consensus 174 L~~l~~~~-g~tiiivtH~~~~~~~~~d 200 (354)
T TIGR02142 174 LERLHAEF-GIPILYVSHSLQEVLRLAD 200 (354)
T ss_pred HHHHHHhc-CCEEEEEecCHHHHHHhCC
Confidence 98886643 6789999999853 34443
No 194
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.12 E-value=9.6e-11 Score=118.42 Aligned_cols=142 Identities=24% Similarity=0.348 Sum_probs=94.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc---cccCceEEEEcccc-hhhhccHHHHHHHhc--
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---DRRRKMMIACTQPR-RVAAMSVSRRVAEEM-- 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~-- 140 (727)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+. .....++.+++....
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~ 103 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLEN 103 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHH
Confidence 5689999999999999999987443 111111110 01123556666653 233456666653211
Q ss_pred -cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHH
Q 004850 141 -DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (727)
Q Consensus 141 -~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll 207 (727)
+. .....+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..++
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 177 (211)
T cd03225 104 LGLPEEEIEERVEEALELVGLE------GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELL 177 (211)
T ss_pred cCCCHHHHHHHHHHHHHHcCcH------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 00 011111111 11245667899999999999999999999999999 777778888889988
Q ss_pred HHHHHhCCCCEEEEEcCccc
Q 004850 208 KEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 208 ~~l~~~~~~~~vil~SATl~ 227 (727)
+++... +..+|+.||.++
T Consensus 178 ~~~~~~--~~tvi~~sH~~~ 195 (211)
T cd03225 178 KKLKAE--GKTIIIVTHDLD 195 (211)
T ss_pred HHHHHc--CCEEEEEeCCHH
Confidence 887653 678999999975
No 195
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.12 E-value=1.1e-10 Score=125.85 Aligned_cols=150 Identities=19% Similarity=0.282 Sum_probs=103.7
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc------ccCceEEEEcccc--hhhhccHHHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD------RRRKMMIACTQPR--RVAAMSVSRRVAE 138 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~------~~~~~~i~~t~p~--~~~~~~v~~~v~~ 138 (727)
|..|+.++|+|++||||||++..+. +++.++.... ..+.+.++++.|. .....++.+++..
T Consensus 44 i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~ 123 (331)
T PRK15079 44 LYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAE 123 (331)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHH
Confidence 6799999999999999999987433 2332222110 1235677888873 3345677777653
Q ss_pred hcc-----c----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHH
Q 004850 139 EMD-----V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (727)
Q Consensus 139 ~~~-----~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (727)
... . .....+|.. ....+..+..+|+|+++|+.++++++.++++||+|| ..+|.....
T Consensus 124 ~l~~~~~~~~~~~~~~~~~~~l~~vgl~-----~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~ 198 (331)
T PRK15079 124 PLRTYHPKLSRQEVKDRVKAMMLKVGLL-----PNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQA 198 (331)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHcCCC-----hHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 211 0 111122221 012356777899999999999999999999999999 677777788
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
.++.+++++.+.. +..+|++||.++. ..+++
T Consensus 199 ~i~~lL~~l~~~~-~~til~iTHdl~~~~~~~d 230 (331)
T PRK15079 199 QVVNLLQQLQREM-GLSLIFIAHDLAVVKHISD 230 (331)
T ss_pred HHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCC
Confidence 8899999886654 7899999999964 34454
No 196
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.12 E-value=1.2e-10 Score=117.87 Aligned_cols=150 Identities=16% Similarity=0.267 Sum_probs=98.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhccccc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (727)
.+..|+.++|.|+|||||||++..+. +++.++.. ....+.+.++++.|......++.+++........
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~ 99 (213)
T TIGR01277 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL 99 (213)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC
Confidence 36789999999999999999987543 22211111 0112346677777765555677777653211000
Q ss_pred ------cceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCC
Q 004850 145 ------GEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (727)
Q Consensus 145 ------~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~ 215 (727)
...+......-+. ...+..+..+|+|+++++.++++++.+++++|+|| ++.|......+.++++++.+..
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~- 178 (213)
T TIGR01277 100 KLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSER- 178 (213)
T ss_pred CccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc-
Confidence 0001000000001 11345667899999999999999999999999999 6777777777888888876543
Q ss_pred CCEEEEEcCccc
Q 004850 216 DLKLVVMSATLE 227 (727)
Q Consensus 216 ~~~vil~SATl~ 227 (727)
+.++|++||..+
T Consensus 179 ~~tii~vsh~~~ 190 (213)
T TIGR01277 179 QRTLLMVTHHLS 190 (213)
T ss_pred CCEEEEEeCCHH
Confidence 679999999985
No 197
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.11 E-value=9.2e-11 Score=118.70 Aligned_cols=148 Identities=20% Similarity=0.340 Sum_probs=98.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-----ccccCceEEEEcccchhhhccHHHHHHHhc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-----PDRRRKMMIACTQPRRVAAMSVSRRVAEEM- 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~- 140 (727)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++....
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~ 102 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPI 102 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHH
Confidence 5689999999999999999987433 12211110 001234566777765555567777664311
Q ss_pred ---cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 141 ---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 141 ---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
+. .....+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~ 176 (213)
T cd03262 103 KVKGMSKAEAEERALELLEKVGLA------DKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLD 176 (213)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCH------hHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 10 001111111 11355677899999999999999999999999999 6777777788888
Q ss_pred HHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+++++.+. +..+|++||..+. ..+++
T Consensus 177 ~l~~~~~~--~~tvi~~sh~~~~~~~~~d 203 (213)
T cd03262 177 VMKDLAEE--GMTMVVVTHEMGFAREVAD 203 (213)
T ss_pred HHHHHHHc--CCEEEEEeCCHHHHHHhCC
Confidence 88887653 6789999998753 34443
No 198
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.11 E-value=1.6e-10 Score=121.33 Aligned_cols=150 Identities=22% Similarity=0.303 Sum_probs=100.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc------ccCceEEEEcccchhhhccHHHHHHHh
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD------RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~------~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
.+..|+.++|+|+|||||||++..+. +++.++.... ..+.+.++++++......++.+++...
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~ 108 (269)
T PRK11831 29 TVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYP 108 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHH
Confidence 35689999999999999999987432 1221111100 122455677776555556777776432
Q ss_pred ccc----c----------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHH
Q 004850 140 MDV----T----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (727)
Q Consensus 140 ~~~----~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (727)
... . ....+|.. ...+..+..+|+|+++++.++++++.+++++|||| +++|......+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 182 (269)
T PRK11831 109 LREHTQLPAPLLHSTVMMKLEAVGLR------GAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVL 182 (269)
T ss_pred HHHccCCCHHHHHHHHHHHHHHcCCh------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 100 0 01112211 12345667899999999999999999999999999 77777788888
Q ss_pred HHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
..+++++.+.. +..+|++||.++ ...+++
T Consensus 183 ~~~l~~~~~~~-g~tiiivsH~~~~~~~~~d 212 (269)
T PRK11831 183 VKLISELNSAL-GVTCVVVSHDVPEVLSIAD 212 (269)
T ss_pred HHHHHHHHHhc-CcEEEEEecCHHHHHHhhC
Confidence 88888876543 679999999975 344443
No 199
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.11 E-value=8.9e-11 Score=118.85 Aligned_cols=153 Identities=18% Similarity=0.253 Sum_probs=97.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCcc-CCC-------c---cccCceEEEEcccchh--hhccHHHHHHHhcccc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVD-IET-------P---DRRRKMMIACTQPRRV--AAMSVSRRVAEEMDVT 143 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~-~~~-------~---~~~~~~~i~~t~p~~~--~~~~v~~~v~~~~~~~ 143 (727)
.+.+|+.++|+|+|||||||++..+. +.. ... . ...+.+.++++++... ...++.+++.......
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~--G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~ 98 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLLKAIL--GLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGH 98 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHc--CCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccc
Confidence 46789999999999999999987532 210 000 0 0123455666665432 1256777765321100
Q ss_pred ----------ccceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 144 ----------IGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 144 ----------~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
....+......-+. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..+++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 178 (213)
T cd03235 99 KGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL 178 (213)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 00000000000001 11245667899999999999999999999999999 788888888889999887
Q ss_pred HHhCCCCEEEEEcCcccH-HHHHh
Q 004850 211 LKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
.+. +..+|+.||.++. ..+++
T Consensus 179 ~~~--~~tvi~~sH~~~~~~~~~d 200 (213)
T cd03235 179 RRE--GMTILVVTHDLGLVLEYFD 200 (213)
T ss_pred Hhc--CCEEEEEeCCHHHHHHhcC
Confidence 652 6789999999853 44444
No 200
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.11 E-value=1.3e-10 Score=119.11 Aligned_cols=153 Identities=22% Similarity=0.309 Sum_probs=98.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCccccCceEEEEcccchhhhccHHHHHHHhcc---cc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD---VT 143 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~---~~ 143 (727)
+..|+.++|+|+|||||||++..+. +++.++... .....++++.+......++.+++..... ..
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~ 85 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEP--GPDRMVVFQNYSLLPWLTVRENIALAVDRVLPD 85 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC--ChhheEEecCcccCCCCCHHHHHHHHHHhcccC
Confidence 5789999999999999999987532 111111110 0112456666655555677777643210 00
Q ss_pred c-----cceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCC
Q 004850 144 I-----GEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (727)
Q Consensus 144 ~-----~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~ 215 (727)
. ...+......-+. ...+..+..+|+|+++|+.++++++.+++++|+|| +++|......+..+++++.+..
T Consensus 86 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~- 164 (230)
T TIGR01184 86 LSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH- 164 (230)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-
Confidence 0 0000000000001 11245667899999999999999999999999999 7888888888889888876543
Q ss_pred CCEEEEEcCcccH-HHHHh
Q 004850 216 DLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 216 ~~~vil~SATl~~-~~~~~ 233 (727)
+..+|+.||.++. ..+++
T Consensus 165 ~~tii~~sH~~~~~~~~~d 183 (230)
T TIGR01184 165 RVTVLMVTHDVDEALLLSD 183 (230)
T ss_pred CCEEEEEeCCHHHHHHhcC
Confidence 6789999999853 44444
No 201
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.11 E-value=1.5e-10 Score=120.61 Aligned_cols=147 Identities=18% Similarity=0.300 Sum_probs=98.4
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCccccCceEEEEcccchhhhccHHHHHHHhc---cc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM---DV- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~~- 142 (727)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.++++.+......++.+++.... +.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 101 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVE 101 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCC
Confidence 5789999999999999999987543 11111111 1113456676665454567777664321 10
Q ss_pred ---------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHH
Q 004850 143 ---------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (727)
Q Consensus 143 ---------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~ 211 (727)
.+...+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..+++++.
T Consensus 102 ~~~~~~~~~~~l~~~gl~------~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 175 (255)
T PRK11248 102 KMQRLEIAHQMLKKVGLE------GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLW 175 (255)
T ss_pred HHHHHHHHHHHHHHcCCh------hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 011111211 11245567899999999999999999999999999 7777788888888888875
Q ss_pred HhCCCCEEEEEcCcccH-HHHHh
Q 004850 212 KNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 212 ~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+.. +..+|++||.++. ..+++
T Consensus 176 ~~~-g~tviivsH~~~~~~~~~d 197 (255)
T PRK11248 176 QET-GKQVLLITHDIEEAVFMAT 197 (255)
T ss_pred Hhc-CCEEEEEeCCHHHHHHhCC
Confidence 543 6789999999853 34443
No 202
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.11 E-value=1.3e-10 Score=119.28 Aligned_cols=148 Identities=19% Similarity=0.279 Sum_probs=99.5
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC--c-c-ccCceEEEEcccchhhhccHHHHHHHhcc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--P-D-RRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~-~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (727)
+..|+.++|+|+|||||||++..+. +++.++.. . . ....+.++++.+......++.+++.....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 102 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEI 102 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHh
Confidence 5789999999999999999987543 11211111 0 0 11235566766655555677777643211
Q ss_pred --c----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHH
Q 004850 142 --V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (727)
Q Consensus 142 --~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll 207 (727)
. .+...+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..++
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l 176 (232)
T cd03218 103 RGLSKKEREEKLEELLEEFHIT------HLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKII 176 (232)
T ss_pred cCCCHHHHHHHHHHHHHHcCCh------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 0 000111110 12355677899999999999999999999999999 777777888888888
Q ss_pred HHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 208 KEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 208 ~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
+++.+. +..+|++||.++ ...+++
T Consensus 177 ~~~~~~--~~tii~~sH~~~~~~~~~d 201 (232)
T cd03218 177 KILKDR--GIGVLITDHNVRETLSITD 201 (232)
T ss_pred HHHHHC--CCEEEEEeCCHHHHHHhCC
Confidence 887643 678999999985 344443
No 203
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.11 E-value=2.4e-10 Score=112.83 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=54.7
Q ss_pred cChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 167 LTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 167 lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
+|+|+.+++.++++++.+++++++|| ++.|......+.++++++... +.++|+.||.++ ...+++
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiii~sh~~~~~~~~~d 172 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA--GKAVLLISSELDELLGLCD 172 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999 777778888888888887543 679999999874 344443
No 204
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.10 E-value=1.1e-10 Score=117.76 Aligned_cols=148 Identities=19% Similarity=0.274 Sum_probs=98.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhc---cc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEM---DV 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~~ 142 (727)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++.... +.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 102 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGI 102 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCC
Confidence 5689999999999999999987543 11111111 011224556666665555677877764321 10
Q ss_pred ------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhC
Q 004850 143 ------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNR 214 (727)
Q Consensus 143 ------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~ 214 (727)
.....+|.. ...+..+..+|+|+.+++.++++++.+++++++|| +++|......++.+++++.+ .
T Consensus 103 ~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~ 175 (208)
T cd03268 103 RKKRIDEVLDVVGLK------DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-Q 175 (208)
T ss_pred cHHHHHHHHHHcCCH------HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C
Confidence 001111111 11245567899999999999999999999999999 67777777888888888765 2
Q ss_pred CCCEEEEEcCcccH-HHHHh
Q 004850 215 PDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 215 ~~~~vil~SATl~~-~~~~~ 233 (727)
+..+|+.||..+. ..+++
T Consensus 176 -~~tii~~tH~~~~~~~~~d 194 (208)
T cd03268 176 -GITVLISSHLLSEIQKVAD 194 (208)
T ss_pred -CCEEEEEcCCHHHHHHhcC
Confidence 6789999998853 34443
No 205
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=1.5e-10 Score=118.79 Aligned_cols=150 Identities=20% Similarity=0.353 Sum_probs=101.2
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc-cccCceEEEEcccchhhhccHHHHHHHhcccc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-DRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT- 143 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~- 143 (727)
.+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++++......++.+++.......
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 100 (232)
T PRK10771 21 TVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL 100 (232)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccccccc
Confidence 36799999999999999999987432 121111110 01234567777776555567777775321100
Q ss_pred ------------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 144 ------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 144 ------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
....+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|......+..++++
T Consensus 101 ~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~ 174 (232)
T PRK10771 101 KLNAAQREKLHAIARQMGIE------DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQ 174 (232)
T ss_pred CCCHHHHHHHHHHHHHcCcH------HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 00111110 12355667899999999999999999999999999 67777777788888888
Q ss_pred HHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 210 VLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+.+.. +..+|+.||..+. ..+++
T Consensus 175 ~~~~~-~~tiii~sH~~~~~~~~~d 198 (232)
T PRK10771 175 VCQER-QLTLLMVSHSLEDAARIAP 198 (232)
T ss_pred HHHhc-CCEEEEEECCHHHHHHhCC
Confidence 76543 6789999999863 44444
No 206
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.10 E-value=1.3e-10 Score=118.39 Aligned_cols=155 Identities=17% Similarity=0.258 Sum_probs=100.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc----ccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
.+..|+.++|+|+|||||||++..+. +++.++.... ..+.+.++++.+......++.+++.....
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~ 101 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAY 101 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhh
Confidence 35789999999999999999987432 1121111100 12345667777655555677777643211
Q ss_pred cc----ccceeceee-eeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHh
Q 004850 142 VT----IGEEVGYSI-RFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (727)
Q Consensus 142 ~~----~~~~vg~~~-~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~ 213 (727)
.. ....+.... .+... ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......++.+++++..
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~- 180 (222)
T cd03224 102 ARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD- 180 (222)
T ss_pred hcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-
Confidence 00 000000000 01001 11345667899999999999999999999999999 77888888889999988755
Q ss_pred CCCCEEEEEcCccc-HHHHHh
Q 004850 214 RPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 214 ~~~~~vil~SATl~-~~~~~~ 233 (727)
. +..+|++||.++ ...+++
T Consensus 181 ~-~~tiii~sH~~~~~~~~~d 200 (222)
T cd03224 181 E-GVTILLVEQNARFALEIAD 200 (222)
T ss_pred C-CCEEEEEeCCHHHHHHhcc
Confidence 2 689999999985 344443
No 207
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.10 E-value=3.2e-10 Score=117.29 Aligned_cols=147 Identities=18% Similarity=0.180 Sum_probs=97.4
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCc-cCCCcc---ccCceEEEEcccchhhhccHHHHHHHhcc---------ccc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGV-DIETPD---RRRKMMIACTQPRRVAAMSVSRRVAEEMD---------VTI 144 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~-~~~~~~---~~~~~~i~~t~p~~~~~~~v~~~v~~~~~---------~~~ 144 (727)
+..|+.++|+|+|||||||++..+. +. ...... ....+.++++.+......++.+.+..... ..+
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~--G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 99 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLA--GVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEI 99 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHh--CCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHH
Confidence 5689999999999999999998543 22 011100 01134455555543444566665532111 001
Q ss_pred cceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEE
Q 004850 145 GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVM 222 (727)
Q Consensus 145 ~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~ 222 (727)
...+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|......+..+++++.+.. +..+|++
T Consensus 100 l~~l~l~------~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiiiv 172 (246)
T cd03237 100 AKPLQIE------QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN-EKTAFVV 172 (246)
T ss_pred HHHcCCH------HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 1112211 11345677899999999999999999999999999 7888888888888998886643 6789999
Q ss_pred cCcccH-HHHHh
Q 004850 223 SATLEA-EKFQG 233 (727)
Q Consensus 223 SATl~~-~~~~~ 233 (727)
||.++. ..+++
T Consensus 173 sHd~~~~~~~~d 184 (246)
T cd03237 173 EHDIIMIDYLAD 184 (246)
T ss_pred eCCHHHHHHhCC
Confidence 999853 33443
No 208
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.10 E-value=1.2e-10 Score=120.64 Aligned_cols=153 Identities=22% Similarity=0.349 Sum_probs=104.2
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH----------------hcCccCCCc-------cccCceEEEEcccchh--hhccH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV----------------LEGVDIETP-------DRRRKMMIACTQPRRV--AAMSV 132 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l----------------l~~~~~~~~-------~~~~~~~i~~t~p~~~--~~~~v 132 (727)
+.+|++++|+|++||||||+...++ +++.++.+. -+...+.++++.|... +.+++
T Consensus 28 i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~I 107 (316)
T COG0444 28 LKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTI 107 (316)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhH
Confidence 6789999999999999999765322 222222111 0233567788887532 34444
Q ss_pred HHHHHHhc---------------cccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCc
Q 004850 133 SRRVAEEM---------------DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHE 195 (727)
Q Consensus 133 ~~~v~~~~---------------~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--ahe 195 (727)
-+.+.+.. .....+.||.... ....+..+..+|+|++||++++-+++.+|++||.|| ..+
T Consensus 108 g~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~---~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTAL 184 (316)
T COG0444 108 GDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP---ERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184 (316)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH---HHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchh
Confidence 44443221 1222334443210 012356778999999999999999999999999999 445
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHhh
Q 004850 196 RTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 196 r~~~~d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~~ 234 (727)
|......++++++++.+.. +..+|++||++. +..++++
T Consensus 185 Dvt~QaqIl~Ll~~l~~e~-~~aiilITHDl~vva~~aDr 223 (316)
T COG0444 185 DVTVQAQILDLLKELQREK-GTALILITHDLGVVAEIADR 223 (316)
T ss_pred hHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcce
Confidence 6667777999999998854 899999999996 4666654
No 209
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=1.5e-10 Score=124.60 Aligned_cols=152 Identities=21% Similarity=0.293 Sum_probs=101.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc------cccCceEEEEcccc--hhhhccHHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPR--RVAAMSVSRRVA 137 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~--~~~~~~v~~~v~ 137 (727)
.|..|+.++|+|++||||||++..+. +++.++... ...+.+.++++.|. ....+++.+.+.
T Consensus 37 ~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~ 116 (327)
T PRK11308 37 TLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILE 116 (327)
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHH
Confidence 35789999999999999999987433 222222111 01235677887773 223345544443
Q ss_pred Hhc--------------cccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHH
Q 004850 138 EEM--------------DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (727)
Q Consensus 138 ~~~--------------~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (727)
... .......+|.. ....+..+..+|+|+++|+.++++++.++++||+|| .++|.....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~ 191 (327)
T PRK11308 117 EPLLINTSLSAAERREKALAMMAKVGLR-----PEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQA 191 (327)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHCCCC-----hHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHH
Confidence 211 01112223321 011355677899999999999999999999999999 677777788
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHhh
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~~ 234 (727)
.++++++++.+.. +..+|++||.++. ..+++.
T Consensus 192 ~i~~lL~~l~~~~-g~til~iTHdl~~~~~~adr 224 (327)
T PRK11308 192 QVLNLMMDLQQEL-GLSYVFISHDLSVVEHIADE 224 (327)
T ss_pred HHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCE
Confidence 8999999886654 7899999999864 345543
No 210
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=1.1e-10 Score=123.65 Aligned_cols=151 Identities=24% Similarity=0.354 Sum_probs=102.5
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc-----cccCceEEEEcccc-hhhhccHHHHHHHhc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-----DRRRKMMIACTQPR-RVAAMSVSRRVAEEM 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-----~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~ 140 (727)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.+++++|. .....++.+++....
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 109 (287)
T PRK13637 30 IEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGP 109 (287)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHH
Confidence 5789999999999999999987543 222222110 11234567777763 223457777775321
Q ss_pred ---cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 141 ---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 141 ---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
+. .....+|.. .....+..+..+|+|+++|+.++++++.+|+++|+|| +++|......+++
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~gL~----~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~ 185 (287)
T PRK13637 110 INLGLSEEEIENRVKRAMNIVGLD----YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILN 185 (287)
T ss_pred HHCCCCHHHHHHHHHHHHHHcCCC----chhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH
Confidence 10 111122211 0012356677899999999999999999999999999 7788888888999
Q ss_pred HHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+++++.+.. +.++|+.||.++. ..+++
T Consensus 186 ~l~~l~~~~-g~tvi~vtHd~~~~~~~~d 213 (287)
T PRK13637 186 KIKELHKEY-NMTIILVSHSMEDVAKLAD 213 (287)
T ss_pred HHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 999886643 6899999999863 34443
No 211
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=1.3e-10 Score=123.02 Aligned_cols=150 Identities=19% Similarity=0.325 Sum_probs=100.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc-------cccCceEEEEcccc-hhhhccHHHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-------DRRRKMMIACTQPR-RVAAMSVSRRVAE 138 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-------~~~~~~~i~~t~p~-~~~~~~v~~~v~~ 138 (727)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.+++++|. .+...++.+++..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~ 109 (286)
T PRK13646 30 FEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIF 109 (286)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHh
Confidence 5789999999999999999988543 222222110 11234567777763 2222366666643
Q ss_pred hc---cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHH
Q 004850 139 EM---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (727)
Q Consensus 139 ~~---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (727)
.. +. .....+|+. ....+..+..+|+|+++++.++++++.+|+++|+|| +++|......+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gL~-----~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l 184 (286)
T PRK13646 110 GPKNFKMNLDEVKNYAHRLLMDLGFS-----RDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQV 184 (286)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHcCCC-----hhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 21 10 111122221 011245677899999999999999999999999999 77778888889
Q ss_pred HHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+.+++++.... +.++|++||.++. ..+++
T Consensus 185 ~~~l~~l~~~~-g~tvl~vtH~~~~~~~~~d 214 (286)
T PRK13646 185 MRLLKSLQTDE-NKTIILVSHDMNEVARYAD 214 (286)
T ss_pred HHHHHHHHHhC-CCEEEEEecCHHHHHHhCC
Confidence 99999886543 7899999999863 44444
No 212
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.09 E-value=1.8e-10 Score=119.02 Aligned_cols=152 Identities=21% Similarity=0.283 Sum_probs=99.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhc--
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM-- 140 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~-- 140 (727)
.+..|+.++|+|+|||||||++..+. +++.++.. ......+.++++.+......++.+++....
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 102 (242)
T cd03295 23 EIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKL 102 (242)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHH
Confidence 35789999999999999999987432 12211111 011224556666665555567777764321
Q ss_pred -cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHH
Q 004850 141 -DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (727)
Q Consensus 141 -~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll 207 (727)
+. .....+|.. .....+..+..+|+|+++++.++++++.+++++|+|| ++.|......+..++
T Consensus 103 ~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L 178 (242)
T cd03295 103 LKWPKEKIRERADELLALVGLD----PAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEF 178 (242)
T ss_pred cCCCHHHHHHHHHHHHHHcCCC----cHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 00 011111211 0001245667899999999999999999999999999 666777778888888
Q ss_pred HHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 208 KEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 208 ~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
+++.+.. +..+|+.||..+ ...+++
T Consensus 179 ~~~~~~~-g~tvii~sH~~~~~~~~~d 204 (242)
T cd03295 179 KRLQQEL-GKTIVFVTHDIDEAFRLAD 204 (242)
T ss_pred HHHHHHc-CCEEEEEecCHHHHHHhCC
Confidence 8876543 678999999985 344443
No 213
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=1.6e-10 Score=121.91 Aligned_cols=144 Identities=19% Similarity=0.304 Sum_probs=98.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc---cccCceEEEEcccc-hhhhccHHHHHHHhc--
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---DRRRKMMIACTQPR-RVAAMSVSRRVAEEM-- 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~-- 140 (727)
+..|++++|+|+|||||||++..+. +++.++... ...+.+.++++++. .....++.+++....
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~ 109 (279)
T PRK13635 30 VYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLEN 109 (279)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhh
Confidence 5789999999999999999987432 222222110 11234566777763 344457777764321
Q ss_pred -cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHH
Q 004850 141 -DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (727)
Q Consensus 141 -~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll 207 (727)
+. .....+|.. ...+..+..+|+|+++++.++++++.++++||+|| +++|......++.++
T Consensus 110 ~~~~~~~~~~~~~~~l~~~gL~------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l 183 (279)
T PRK13635 110 IGVPREEMVERVDQALRQVGME------DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETV 183 (279)
T ss_pred CCCCHHHHHHHHHHHHHHcCCh------hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 00 011111211 12345667899999999999999999999999999 777788888899999
Q ss_pred HHHHHhCCCCEEEEEcCcccH
Q 004850 208 KEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 208 ~~l~~~~~~~~vil~SATl~~ 228 (727)
+++.+.. +.++|++||.++.
T Consensus 184 ~~l~~~~-~~tilivsH~~~~ 203 (279)
T PRK13635 184 RQLKEQK-GITVLSITHDLDE 203 (279)
T ss_pred HHHHHcC-CCEEEEEecCHHH
Confidence 8876543 6899999999864
No 214
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=1.5e-10 Score=121.90 Aligned_cols=150 Identities=20% Similarity=0.209 Sum_probs=101.7
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc---cccCceEEEEcccc-hhhhccHHHHHHHhcc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---DRRRKMMIACTQPR-RVAAMSVSRRVAEEMD 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~ 141 (727)
.+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.|. .+...++.+++.....
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~ 106 (274)
T PRK13647 27 SIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPV 106 (274)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHH
Confidence 35789999999999999999987543 222211110 01234567777663 3344577777753210
Q ss_pred ---c----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHH
Q 004850 142 ---V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (727)
Q Consensus 142 ---~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~l 206 (727)
. .....+|.. ...+..+..+|+|+++|+.++++++.+++++|+|| +++|......++.+
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~L~------~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~ 180 (274)
T PRK13647 107 NMGLDKDEVERRVEEALKAVRMW------DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEI 180 (274)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCH------HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH
Confidence 0 001111211 12355677899999999999999999999999999 77788888889999
Q ss_pred HHHHHHhCCCCEEEEEcCcccH-HHHHhh
Q 004850 207 LKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (727)
Q Consensus 207 l~~l~~~~~~~~vil~SATl~~-~~~~~~ 234 (727)
++++... +..+|++||.++. ..+++.
T Consensus 181 l~~~~~~--g~tili~tH~~~~~~~~~d~ 207 (274)
T PRK13647 181 LDRLHNQ--GKTVIVATHDVDLAAEWADQ 207 (274)
T ss_pred HHHHHHC--CCEEEEEeCCHHHHHHhCCE
Confidence 9988653 7899999999863 455543
No 215
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.09 E-value=1.1e-10 Score=124.63 Aligned_cols=149 Identities=17% Similarity=0.231 Sum_probs=102.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc--cccCceEEEEcccchhhhccHHHHHHHhc---c
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP--DRRRKMMIACTQPRRVAAMSVSRRVAEEM---D 141 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~ 141 (727)
+.+|++++++|||||||||++..+. +++.++... ...+.+.++++.+......++.+++.... +
T Consensus 25 i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~ 104 (301)
T TIGR03522 25 AQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG 104 (301)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC
Confidence 5789999999999999999988543 111111110 11234567777766555677877764211 1
Q ss_pred cc----------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 142 VT----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 142 ~~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
.. ....+|.. ...+..+..+|+|+++|+.++.+++.+|+++|||| +++|......+..++++
T Consensus 105 ~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~ 178 (301)
T TIGR03522 105 MKGQLLKQRVEEMIELVGLR------PEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKN 178 (301)
T ss_pred CCHHHHHHHHHHHHHHCCCc------hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 00 11112211 12356677899999999999999999999999999 77788888888888888
Q ss_pred HHHhCCCCEEEEEcCccc-HHHHHhhh
Q 004850 210 VLKNRPDLKLVVMSATLE-AEKFQGYF 235 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~-~~~~~~~f 235 (727)
+. . +..+|+.||.++ .+.+++..
T Consensus 179 ~~-~--~~tiii~sH~l~~~~~~~d~i 202 (301)
T TIGR03522 179 IG-K--DKTIILSTHIMQEVEAICDRV 202 (301)
T ss_pred hc-C--CCEEEEEcCCHHHHHHhCCEE
Confidence 73 2 578999999996 56676553
No 216
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.09 E-value=2e-10 Score=125.36 Aligned_cols=149 Identities=19% Similarity=0.256 Sum_probs=104.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHH-----------HhcCc----cCCCc--c-----ccCceEEEEcccchhhhccHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGV----DIETP--D-----RRRKMMIACTQPRRVAAMSVSRR 135 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~----~~~~~--~-----~~~~~~i~~t~p~~~~~~~v~~~ 135 (727)
+..|+.++|+|+|||||||++..+ ++++. ++... . ..+.+.++++.+..+...++.++
T Consensus 47 i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eN 126 (382)
T TIGR03415 47 IEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEEN 126 (382)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHH
Confidence 578999999999999999998743 22321 11110 0 11357778887776667788888
Q ss_pred HHHhc---c----------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 136 VAEEM---D----------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 136 v~~~~---~----------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
+.... + ......+|.. ...+..+..+|+|+++|+.++++++.+++++++|| +++|....
T Consensus 127 i~~~~~~~g~~~~~~~~~a~e~le~vgL~------~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r 200 (382)
T TIGR03415 127 VAFGLEMQGMPEAERRKRVDEQLELVGLA------QWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIR 200 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCc------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 76432 1 0112222321 12355677899999999999999999999999999 67778888
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
..+.+.+.++.+.. +.++|++||.++. ..+++
T Consensus 201 ~~l~~~L~~l~~~~-~~TII~iTHdl~e~~~l~D 233 (382)
T TIGR03415 201 TQLQDELLELQAKL-NKTIIFVSHDLDEALKIGN 233 (382)
T ss_pred HHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 88888888876543 6899999999863 44443
No 217
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.08 E-value=2e-10 Score=121.87 Aligned_cols=150 Identities=21% Similarity=0.298 Sum_probs=101.1
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-------ccccCceEEEEcccc-hhhhccHHHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-------PDRRRKMMIACTQPR-RVAAMSVSRRVAE 138 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-------~~~~~~~~i~~t~p~-~~~~~~v~~~v~~ 138 (727)
|..|++++|+|+|||||||++..+. +++.++.. ....+.+.+++++|. .+...++.+++..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~ 109 (290)
T PRK13634 30 IPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICF 109 (290)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHH
Confidence 5789999999999999999987543 22222210 011234567777763 2334577777643
Q ss_pred hc---cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHH
Q 004850 139 EM---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (727)
Q Consensus 139 ~~---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (727)
.. +. .+...+|.. ....+..+..+|+|+++++.++++++.+|+++|+|| +++|......+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gL~-----~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l 184 (290)
T PRK13634 110 GPMNFGVSEEDAKQKAREMIELVGLP-----EELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEM 184 (290)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCC-----hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 21 10 011112211 011355677899999999999999999999999999 77777888888
Q ss_pred HHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+++++++.... +.++|++||.++. ..+++
T Consensus 185 ~~~L~~l~~~~-g~tviiitHd~~~~~~~~d 214 (290)
T PRK13634 185 MEMFYKLHKEK-GLTTVLVTHSMEDAARYAD 214 (290)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 99998886543 6899999999863 44554
No 218
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.08 E-value=1.6e-10 Score=116.39 Aligned_cols=143 Identities=24% Similarity=0.278 Sum_probs=93.0
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh-----------cCccCCCccccCceEEEEcccchhhhccHHHHHHHhc---cc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM---DV 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~~ 142 (727)
.+.+|+.++|+|+|||||||++..+.= ++.+.........+.+++.++......++.+++.... +.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~ 103 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGG 103 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCC
Confidence 356899999999999999999875331 1111000001112334444443334456666653211 10
Q ss_pred ------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhC
Q 004850 143 ------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNR 214 (727)
Q Consensus 143 ------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~ 214 (727)
.....+|.. ...+..+..+|+|+++++.++++++.+++++|+|| ++.|......+..+++++.+.
T Consensus 104 ~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~- 176 (207)
T PRK13539 104 EELDIAAALEAVGLA------PLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ- 176 (207)
T ss_pred cHHHHHHHHHHcCCH------HHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 011112211 11245566899999999999999999999999999 777777788888888887543
Q ss_pred CCCEEEEEcCccc
Q 004850 215 PDLKLVVMSATLE 227 (727)
Q Consensus 215 ~~~~vil~SATl~ 227 (727)
+..+|++||..+
T Consensus 177 -~~tiii~sH~~~ 188 (207)
T PRK13539 177 -GGIVIAATHIPL 188 (207)
T ss_pred -CCEEEEEeCCch
Confidence 689999999975
No 219
>PRK10908 cell division protein FtsE; Provisional
Probab=99.08 E-value=1.7e-10 Score=117.63 Aligned_cols=147 Identities=17% Similarity=0.298 Sum_probs=98.4
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc---c---ccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---D---RRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~---~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
+..|+.++|+|+|||||||++..+. +++.++... . ..+.+.++++.+......++.+++....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 104 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPL 104 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHH
Confidence 5799999999999999999987543 111111110 0 1224556677665545567777764321
Q ss_pred ---cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 141 ---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 141 ---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
+. .....+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|......+..
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 178 (222)
T PRK10908 105 IIAGASGDDIRRRVSAALDKVGLL------DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILR 178 (222)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCh------hhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 10 011111111 11245667899999999999999999999999999 7777777788888
Q ss_pred HHHHHHHhCCCCEEEEEcCcccH-HHHH
Q 004850 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQ 232 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~~-~~~~ 232 (727)
+++++.+. +..+|++||.++. ..++
T Consensus 179 ~l~~~~~~--~~tiii~sH~~~~~~~~~ 204 (222)
T PRK10908 179 LFEEFNRV--GVTVLMATHDIGLISRRS 204 (222)
T ss_pred HHHHHHHC--CCEEEEEeCCHHHHHHhC
Confidence 88887543 6799999999853 3344
No 220
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.08 E-value=1.3e-10 Score=116.82 Aligned_cols=143 Identities=17% Similarity=0.223 Sum_probs=94.5
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC--ccccCceEEEEcccchhhhccHHHHHHHhccc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (727)
.+.+|+.++|+|+|||||||++..+. +++.++.. ....+.+.+++.++......++.+++......
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~ 102 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH 102 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc
Confidence 36789999999999999999987432 11111110 00112344555555444446777766432110
Q ss_pred ---------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHH
Q 004850 143 ---------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (727)
Q Consensus 143 ---------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~ 211 (727)
.....+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|......+..+++++.
T Consensus 103 ~~~~~~~~~~~l~~~gl~------~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 176 (204)
T PRK13538 103 GPGDDEALWEALAQVGLA------GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA 176 (204)
T ss_pred CccHHHHHHHHHHHcCCH------HHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 011111211 11245677899999999999999999999999999 6777777888888888875
Q ss_pred HhCCCCEEEEEcCccc
Q 004850 212 KNRPDLKLVVMSATLE 227 (727)
Q Consensus 212 ~~~~~~~vil~SATl~ 227 (727)
+. +..+|++||..+
T Consensus 177 ~~--~~tiii~sh~~~ 190 (204)
T PRK13538 177 EQ--GGMVILTTHQDL 190 (204)
T ss_pred HC--CCEEEEEecChh
Confidence 43 678999999874
No 221
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.08 E-value=2.1e-10 Score=119.50 Aligned_cols=150 Identities=20% Similarity=0.265 Sum_probs=99.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc---c-ccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---D-RRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
.+..|+.++|+|+|||||||++..+. +++.++... . ...++.++++++......++.+++.....
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 106 (255)
T PRK11300 27 EVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQH 106 (255)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhh
Confidence 35689999999999999999987432 122111110 0 11234456777766666677777653210
Q ss_pred c--------c--------------------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec-
Q 004850 142 V--------T--------------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE- 192 (727)
Q Consensus 142 ~--------~--------------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE- 192 (727)
. . ....+|.. ...+..+..+|+|+++++.++++++.+|+++|+||
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 180 (255)
T PRK11300 107 QQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL------EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEP 180 (255)
T ss_pred ccccchhhhhhccccccccchhHHHHHHHHHHHhCChh------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 0 0 00011110 11345667899999999999999999999999999
Q ss_pred -cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 193 -AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 193 -aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
.++|......+..++.++.++. +..+|+.||.++. ..+++
T Consensus 181 t~~LD~~~~~~l~~~L~~~~~~~-~~tii~~sH~~~~~~~~~d 222 (255)
T PRK11300 181 AAGLNPKETKELDELIAELRNEH-NVTVLLIEHDMKLVMGISD 222 (255)
T ss_pred ccCCCHHHHHHHHHHHHHHHhhc-CCEEEEEeCCHHHHHHhCC
Confidence 7777788888889888876543 6799999999853 34443
No 222
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.08 E-value=2.2e-10 Score=114.79 Aligned_cols=150 Identities=15% Similarity=0.148 Sum_probs=94.1
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC--ccccCceEEEEcccchhhhccHHHHHHHhcccc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (727)
.+.+|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++.......
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~ 102 (200)
T PRK13540 23 HLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS 102 (200)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC
Confidence 35799999999999999999988432 11111111 001123445555444434567777665321100
Q ss_pred cc-ceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEE
Q 004850 144 IG-EEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKL 219 (727)
Q Consensus 144 ~~-~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~v 219 (727)
.. ..+.......+. ...+..+..+|+|+.+++.++++++.+++++|+|| ++.|....+.+..+++++.+. +..+
T Consensus 103 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~--~~ti 180 (200)
T PRK13540 103 PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAK--GGAV 180 (200)
T ss_pred cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHc--CCEE
Confidence 00 000000000001 11244556799999999999999999999999999 677777778888888886433 6789
Q ss_pred EEEcCcccH
Q 004850 220 VVMSATLEA 228 (727)
Q Consensus 220 il~SATl~~ 228 (727)
|+.||....
T Consensus 181 ii~sh~~~~ 189 (200)
T PRK13540 181 LLTSHQDLP 189 (200)
T ss_pred EEEeCCchh
Confidence 999998753
No 223
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.07 E-value=2.3e-10 Score=118.79 Aligned_cols=148 Identities=18% Similarity=0.288 Sum_probs=98.4
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc-----------cccCceEEEEcccchhhhccHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-----------DRRRKMMIACTQPRRVAAMSVSRR 135 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-----------~~~~~~~i~~t~p~~~~~~~v~~~ 135 (727)
+..|+.++|+|+|||||||++..+. +++.++... .....+.++++.+......++.++
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 105 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLEN 105 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHH
Confidence 5789999999999999999987543 111111100 012245666776655555677776
Q ss_pred HHHhc----cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhh
Q 004850 136 VAEEM----DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (727)
Q Consensus 136 v~~~~----~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~ 199 (727)
+.... +. .....+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|...
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~ 179 (250)
T PRK11264 106 IIEGPVIVKGEPKEEATARARELLAKVGLA------GKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPEL 179 (250)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCc------chhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 64210 00 001111211 11245667899999999999999999999999999 7777777
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 200 ~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
...+..+++++... +..+|++||..+. ..+++
T Consensus 180 ~~~l~~~l~~~~~~--~~tvi~~tH~~~~~~~~~d 212 (250)
T PRK11264 180 VGEVLNTIRQLAQE--KRTMVIVTHEMSFARDVAD 212 (250)
T ss_pred HHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcC
Confidence 88888888887543 6789999998853 34443
No 224
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.07 E-value=5.1e-09 Score=125.90 Aligned_cols=113 Identities=14% Similarity=0.108 Sum_probs=91.3
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccC
Q 004850 279 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETS 358 (727)
Q Consensus 279 ~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~g 358 (727)
..++|||..-....+.+.++|... ++..+.+||+++..+|..+++.|... .....-+|+||.++..|
T Consensus 487 g~KVLIFSQft~~LdiLed~L~~~---------g~~y~rIdGsts~~eRq~~Id~Fn~~----~s~~~VfLLSTrAGGlG 553 (1033)
T PLN03142 487 DSRVLIFSQMTRLLDILEDYLMYR---------GYQYCRIDGNTGGEDRDASIDAFNKP----GSEKFVFLLSTRAGGLG 553 (1033)
T ss_pred CCeEEeehhHHHHHHHHHHHHHHc---------CCcEEEECCCCCHHHHHHHHHHhccc----cCCceEEEEeccccccC
Confidence 458999998777777777766542 67889999999999999999999643 11134678999999999
Q ss_pred cccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC---CCceEEEecchhhhc
Q 004850 359 LTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRLYTEKSFN 422 (727)
Q Consensus 359 itIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~---~~G~~~~L~t~~~~~ 422 (727)
|++...++||.++. |=+.....|+.||+.|. ++=.+|+|+++...+
T Consensus 554 INLt~Ad~VIiyD~------------------dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 554 INLATADIVILYDS------------------DWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred CchhhCCEEEEeCC------------------CCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 99999999999988 77778888999999887 344689999986653
No 225
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.07 E-value=1.2e-10 Score=119.14 Aligned_cols=146 Identities=22% Similarity=0.303 Sum_probs=101.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhH-----------HHhcCccCCCcc-------ccCceEEEEcccchhhhccHHHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIETPD-------RRRKMMIACTQPRRVAAMSVSRRVAE 138 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~~~-------~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (727)
.+.+|++.+|.|=+||||||++.. +++++.++...+ +...+.+++++--.++..+|.++++.
T Consensus 50 ~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~f 129 (386)
T COG4175 50 DVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAF 129 (386)
T ss_pred eecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhc
Confidence 468999999999999999999873 334444332210 12234556666666666777777643
Q ss_pred h-------------ccccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeecc--CcChhhHHHH
Q 004850 139 E-------------MDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEA--HERTLATDVL 203 (727)
Q Consensus 139 ~-------------~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEa--her~~~~d~l 203 (727)
. +..+..+.||.. ...+..+..+|+|+.||+-+++++..+++++++||+ .+|++-...+
T Consensus 130 GLev~Gv~~~er~~~a~~~l~~VgL~------~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~m 203 (386)
T COG4175 130 GLEVQGVPKAEREERALEALELVGLE------GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM 203 (386)
T ss_pred ceeecCCCHHHHHHHHHHHHHHcCch------hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHH
Confidence 2 223334455533 224567889999999999999999999999999994 4566666666
Q ss_pred HHHHHHHHHhCCCCEEEEEcCcccHH
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLEAE 229 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~~~ 229 (727)
.+.|.++.++. ..+++++||+++..
T Consensus 204 QdeLl~Lq~~l-~KTIvFitHDLdEA 228 (386)
T COG4175 204 QDELLELQAKL-KKTIVFITHDLDEA 228 (386)
T ss_pred HHHHHHHHHHh-CCeEEEEecCHHHH
Confidence 66666666554 67999999999753
No 226
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.06 E-value=2.3e-10 Score=114.83 Aligned_cols=143 Identities=19% Similarity=0.169 Sum_probs=94.2
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC--ccccCceEEEEcccchhhhccHHHHHHHhccc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (727)
.+..|+.++|+|+|||||||++..+. +++.+... ....+.+.++++++......++.+++......
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 101 (201)
T cd03231 22 TLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADH 101 (201)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccc
Confidence 36789999999999999999987432 11111110 01112345566555444456777766432110
Q ss_pred ------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhC
Q 004850 143 ------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNR 214 (727)
Q Consensus 143 ------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~ 214 (727)
.....+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......+.++++++...
T Consensus 102 ~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~- 174 (201)
T cd03231 102 SDEQVEEALARVGLN------GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR- 174 (201)
T ss_pred cHHHHHHHHHHcCCh------hhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Confidence 011112211 11245667899999999999999999999999999 777777777888888876543
Q ss_pred CCCEEEEEcCccc
Q 004850 215 PDLKLVVMSATLE 227 (727)
Q Consensus 215 ~~~~vil~SATl~ 227 (727)
+..+|++||...
T Consensus 175 -g~tiii~sH~~~ 186 (201)
T cd03231 175 -GGMVVLTTHQDL 186 (201)
T ss_pred -CCEEEEEecCch
Confidence 678999999763
No 227
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=1.9e-10 Score=118.88 Aligned_cols=148 Identities=18% Similarity=0.314 Sum_probs=98.3
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCC--C-------ccccCceEEEEcccchhhhccHHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIE--T-------PDRRRKMMIACTQPRRVAAMSVSRRVA 137 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~--~-------~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (727)
+..|+.++|+|+|||||||++..+. +++.++. . ....+.+.++++.+......++.+++.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~ 104 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLI 104 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHH
Confidence 5689999999999999999987532 2222110 0 001224566777766555567777764
Q ss_pred Hh----ccc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHH
Q 004850 138 EE----MDV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (727)
Q Consensus 138 ~~----~~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (727)
.. .+. .....+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|.....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~ 178 (242)
T PRK11124 105 EAPCRVLGLSKDQALARAEKLLERLRLK------PYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITA 178 (242)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCh------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHH
Confidence 21 010 001111211 12345667899999999999999999999999999 677777778
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
.+..+++++... +..+|++||..+. ..+++
T Consensus 179 ~l~~~l~~~~~~--~~tii~~sh~~~~~~~~~d 209 (242)
T PRK11124 179 QIVSIIRELAET--GITQVIVTHEVEVARKTAS 209 (242)
T ss_pred HHHHHHHHHHHc--CCEEEEEeCCHHHHHHhcC
Confidence 888888887542 6789999999853 33443
No 228
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=2.6e-10 Score=120.09 Aligned_cols=143 Identities=20% Similarity=0.241 Sum_probs=97.0
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc----cccCceEEEEcccch-hhhccHHHHHHHhcc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP----DRRRKMMIACTQPRR-VAAMSVSRRVAEEMD 141 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~----~~~~~~~i~~t~p~~-~~~~~v~~~v~~~~~ 141 (727)
+..|++++|+|+|||||||++..+. +++.++... ...+.+.++++.|.. +...++.+++.....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~ 104 (274)
T PRK13644 25 IKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPE 104 (274)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHH
Confidence 5789999999999999999987432 222222110 112345667776642 344577776642210
Q ss_pred c-------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHH
Q 004850 142 V-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (727)
Q Consensus 142 ~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~l 206 (727)
. .....+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......++.+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~ 178 (274)
T PRK13644 105 NLCLPPIEIRKRVDRALAEIGLE------KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLER 178 (274)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCH------HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 0 001111211 11345677899999999999999999999999999 67777777888888
Q ss_pred HHHHHHhCCCCEEEEEcCcccH
Q 004850 207 LKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 207 l~~l~~~~~~~~vil~SATl~~ 228 (727)
++++... +..+|++||.++.
T Consensus 179 l~~l~~~--g~til~~tH~~~~ 198 (274)
T PRK13644 179 IKKLHEK--GKTIVYITHNLEE 198 (274)
T ss_pred HHHHHhC--CCEEEEEecCHHH
Confidence 8887543 7899999999864
No 229
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.06 E-value=3.2e-10 Score=112.84 Aligned_cols=127 Identities=18% Similarity=0.176 Sum_probs=86.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCc-cCCCc-----------cccCceEEEEcccchhhhccHHHHHHHhccccc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGV-DIETP-----------DRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~-~~~~~-----------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (727)
.+..|+.++|+|+|||||||++..+.-... ..... ...+.+.++++.+......++.+++.....
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~--- 105 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSAL--- 105 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHH---
Confidence 357899999999999999999886541100 00000 001123344444443444455555542110
Q ss_pred cceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEE
Q 004850 145 GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVM 222 (727)
Q Consensus 145 ~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~ 222 (727)
...+|+|+.+++.++++++.+++++++|| ++.|......++.+++++... +..+|++
T Consensus 106 -------------------~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiiiv 164 (192)
T cd03232 106 -------------------LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADS--GQAILCT 164 (192)
T ss_pred -------------------HhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHc--CCEEEEE
Confidence 00699999999999999999999999999 677777777888888887543 6899999
Q ss_pred cCccc
Q 004850 223 SATLE 227 (727)
Q Consensus 223 SATl~ 227 (727)
||..+
T Consensus 165 tH~~~ 169 (192)
T cd03232 165 IHQPS 169 (192)
T ss_pred EcCCh
Confidence 99986
No 230
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.06 E-value=1.1e-08 Score=123.88 Aligned_cols=139 Identities=17% Similarity=0.188 Sum_probs=90.4
Q ss_pred cHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCC
Q 004850 261 DYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKE 340 (727)
Q Consensus 261 ~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~ 340 (727)
++.+.+...+.++... .+|++|||+|+.+..+.+++.|..... ..++.++. .+.. ..|.++++.|+.+
T Consensus 657 ~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~-----~~~~~~l~--q~~~-~~r~~ll~~F~~~--- 724 (850)
T TIGR01407 657 EYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPE-----FEGYEVLA--QGIN-GSRAKIKKRFNNG--- 724 (850)
T ss_pred HHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhcc-----ccCceEEe--cCCC-ccHHHHHHHHHhC---
Confidence 4555666666666543 468999999999999999999875311 01333333 2222 4677888888877
Q ss_pred CCCCCcEEEEecCccccCcccCCeE--EEEcCCCccceeeccc----------cCcccc--ccccccHhhHHhhhcccCC
Q 004850 341 GGPPGRKIVVSTNIAETSLTIDGIV--YVIDPGFAKQKVYNPR----------VRVESL--LVSPISKASAHQRSGRAGR 406 (727)
Q Consensus 341 ~~~~~~kvlvaTniAe~gitIp~V~--~VId~g~~k~~~~~~~----------~~~~~l--~~~pis~~~~~qR~GRaGR 406 (727)
...|+++|+.+..|||+||.. .||=.+++-..--||. .|-+.+ ...|-..-...|-+||.=|
T Consensus 725 ----~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIR 800 (850)
T TIGR01407 725 ----EKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIR 800 (850)
T ss_pred ----CCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccc
Confidence 778999999999999999885 5665666422111111 011111 1125455667899999998
Q ss_pred C--CCceEEEe
Q 004850 407 T--QPGKCFRL 415 (727)
Q Consensus 407 ~--~~G~~~~L 415 (727)
. -.|..+-|
T Consensus 801 s~~D~G~v~il 811 (850)
T TIGR01407 801 RENDRGSIVIL 811 (850)
T ss_pred cCCceEEEEEE
Confidence 8 35766654
No 231
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=1.9e-10 Score=122.68 Aligned_cols=150 Identities=19% Similarity=0.228 Sum_probs=100.5
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCC--------------------------C-ccccCceE
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIE--------------------------T-PDRRRKMM 118 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~--------------------------~-~~~~~~~~ 118 (727)
.+.+|+.++|+|+|||||||++..+. +++.+.. . ....+.++
T Consensus 29 ~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 108 (305)
T PRK13651 29 EINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVG 108 (305)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceE
Confidence 35789999999999999999987432 1111100 0 01123456
Q ss_pred EEEcccc-hhhhccHHHHHHHhc---c----------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccC
Q 004850 119 IACTQPR-RVAAMSVSRRVAEEM---D----------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLER 184 (727)
Q Consensus 119 i~~t~p~-~~~~~~v~~~v~~~~---~----------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~ 184 (727)
+++++|. .+...++.++++... + ......+|.. ....+..+..+|+|+++|+.++++++.+
T Consensus 109 ~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----~~~~~~~~~~LSgGqkqrvalA~aL~~~ 183 (305)
T PRK13651 109 VVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLD-----ESYLQRSPFELSGGQKRRVALAGILAME 183 (305)
T ss_pred EEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC-----hhhhhCChhhCCHHHHHHHHHHHHHHhC
Confidence 7777762 333457777664211 1 0111122211 0123556778999999999999999999
Q ss_pred CeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 185 YKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 185 ~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
|+++|+|| +++|......++++++++... +..+|++||.++ ...+++
T Consensus 184 P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tiiivtHd~~~~~~~ad 233 (305)
T PRK13651 184 PDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ--GKTIILVTHDLDNVLEWTK 233 (305)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeeCHHHHHHhCC
Confidence 99999999 777888888899999888643 789999999986 445554
No 232
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.06 E-value=2.5e-10 Score=118.74 Aligned_cols=149 Identities=21% Similarity=0.326 Sum_probs=99.1
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc----------------cccCceEEEEcccchhhhc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP----------------DRRRKMMIACTQPRRVAAM 130 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~----------------~~~~~~~i~~t~p~~~~~~ 130 (727)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (252)
T TIGR03005 23 VAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHK 102 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCC
Confidence 5789999999999999999987532 122111100 0123456677766555556
Q ss_pred cHHHHHHHhc----cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cC
Q 004850 131 SVSRRVAEEM----DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AH 194 (727)
Q Consensus 131 ~v~~~v~~~~----~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--ah 194 (727)
++.+++.... +. .....+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| ++
T Consensus 103 tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 176 (252)
T TIGR03005 103 TVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA------DKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSA 176 (252)
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh------hHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 7777664310 00 011111211 11245567899999999999999999999999999 66
Q ss_pred cChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 195 ERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 195 er~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+|......+..+++++.+.. +..+|++||.++. ..+++
T Consensus 177 LD~~~~~~l~~~l~~~~~~~-~~tiiivsH~~~~~~~~~d 215 (252)
T TIGR03005 177 LDPELVGEVLNVIRRLASEH-DLTMLLVTHEMGFAREFAD 215 (252)
T ss_pred CCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhcC
Confidence 77777777888888876543 6799999999863 33443
No 233
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=2.8e-10 Score=119.69 Aligned_cols=145 Identities=19% Similarity=0.349 Sum_probs=97.0
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc---cccCceEEEEcccc-hhhhccHHHHHHHhcc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---DRRRKMMIACTQPR-RVAAMSVSRRVAEEMD 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~ 141 (727)
.+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.|. .+...++.+++.....
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~ 110 (271)
T PRK13632 31 EINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLE 110 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHH
Confidence 35789999999999999999987432 222211110 11224556666653 3444677777643210
Q ss_pred ---cc----------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHH
Q 004850 142 ---VT----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (727)
Q Consensus 142 ---~~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~l 206 (727)
.. +...+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|......++.+
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~ 184 (271)
T PRK13632 111 NKKVPPKKMKDIIDDLAKKVGME------DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKI 184 (271)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCH------HHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 00 01111111 11355667899999999999999999999999999 67777778888899
Q ss_pred HHHHHHhCCCCEEEEEcCcccH
Q 004850 207 LKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 207 l~~l~~~~~~~~vil~SATl~~ 228 (727)
++++.+.. +..+|++||.++.
T Consensus 185 l~~~~~~~-~~tiii~sH~~~~ 205 (271)
T PRK13632 185 MVDLRKTR-KKTLISITHDMDE 205 (271)
T ss_pred HHHHHHhc-CcEEEEEEechhH
Confidence 88876542 4789999999854
No 234
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.06 E-value=1.3e-10 Score=111.54 Aligned_cols=149 Identities=17% Similarity=0.220 Sum_probs=104.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhh-----------HHHhcCccCCCc----cccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 77 VLKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIETP----DRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~-----------~~ll~~~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
.+.+|++|++.||||+||||.|. .+++++.++... ..+.+++.+|+.+..+--++|.+++..-+.
T Consensus 26 ~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE 105 (243)
T COG1137 26 EVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLE 105 (243)
T ss_pred EEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHh
Confidence 36789999999999999999886 456666665542 123467788998888877888887742211
Q ss_pred cc--ccceeceeee-------eccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 142 VT--IGEEVGYSIR-------FEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 142 ~~--~~~~vg~~~~-------~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
.. ....-....+ |.-....+..-..+|+|...|.-+++++..+|++++||| |..|++....+..+++.+
T Consensus 106 ~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L 185 (243)
T COG1137 106 IREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHL 185 (243)
T ss_pred hhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHH
Confidence 00 0000000000 000011234445799999999999999999999999999 888888888888888887
Q ss_pred HHhCCCCEEEEEcCccc
Q 004850 211 LKNRPDLKLVVMSATLE 227 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~ 227 (727)
..+ ++-+++.-|...
T Consensus 186 ~~r--giGvLITDHNVR 200 (243)
T COG1137 186 KDR--GIGVLITDHNVR 200 (243)
T ss_pred HhC--CceEEEccccHH
Confidence 655 788999888763
No 235
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=2.3e-10 Score=119.89 Aligned_cols=155 Identities=20% Similarity=0.232 Sum_probs=97.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcccc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (727)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++.......
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPW 113 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccc
Confidence 5689999999999999999987432 11111100 001123556666554445567777665321000
Q ss_pred c----------cceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 144 I----------GEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 144 ~----------~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
. ...+......-+. ...+..+..+|+|+++++.++++++.+++++|||| +++|......+..+++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l 193 (265)
T PRK10575 114 HGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193 (265)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 0 0000000000001 11245566899999999999999999999999999 777777788888888887
Q ss_pred HHhCCCCEEEEEcCcccH-HHHHh
Q 004850 211 LKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
.+.. +..+|++||.++. ..+++
T Consensus 194 ~~~~-~~tiii~sH~~~~i~~~~d 216 (265)
T PRK10575 194 SQER-GLTVIAVLHDINMAARYCD 216 (265)
T ss_pred HHhc-CCEEEEEeCCHHHHHHhCC
Confidence 6543 6789999999863 34443
No 236
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.05 E-value=3.3e-10 Score=117.06 Aligned_cols=148 Identities=20% Similarity=0.279 Sum_probs=99.0
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc----ccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
.+.+|+.++|+|+|||||||++..+. +++.++.... ..+.+.++++.+......++.+++.....
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~ 103 (242)
T TIGR03411 24 YVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALP 103 (242)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhh
Confidence 35789999999999999999987433 1221111100 11245667776665656677776643211
Q ss_pred c---------------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChh
Q 004850 142 V---------------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTL 198 (727)
Q Consensus 142 ~---------------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~ 198 (727)
. .....+|.. ...+..+..+|+|+++++.++++++.+++++++|| +++|..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~ 177 (242)
T TIGR03411 104 RDKSVFASLFFRLSAEEKDRIEEVLETIGLA------DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDE 177 (242)
T ss_pred cccccccccccccHHHHHHHHHHHHHHcCCc------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHH
Confidence 0 000111111 11245677899999999999999999999999999 777777
Q ss_pred hHHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 199 ATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 199 ~~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
....+..+++++.. +..+|++||.++. ..+++
T Consensus 178 ~~~~l~~~l~~~~~---~~tii~~sH~~~~~~~~~d 210 (242)
T TIGR03411 178 ETEKTAELLKSLAG---KHSVVVVEHDMEFVRSIAD 210 (242)
T ss_pred HHHHHHHHHHHHhc---CCEEEEEECCHHHHHHhCC
Confidence 78888888888743 4689999998853 33443
No 237
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.05 E-value=2.9e-10 Score=115.99 Aligned_cols=147 Identities=18% Similarity=0.257 Sum_probs=98.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh-----------cCccCCCccccCceEEEEcccchhhhccHHHHHHHhc---cc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM---DV- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~~- 142 (727)
+.+|+.++|+|+|||||||++..+.= ++.++.. ...+.+.++++++......++.+++.... +.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~-~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~ 101 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR-KDLHKIGSLIESPPLYENLTARENLKVHTTLLGLP 101 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccc-cccccEEEEcCCCCccccCCHHHHHHHHHHHcCCC
Confidence 57899999999999999999875331 1111110 01124556676666555567777764221 10
Q ss_pred -----cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCC
Q 004850 143 -----TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (727)
Q Consensus 143 -----~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~ 215 (727)
.....+|.. ...+..+..+|+|+++++.++++++.+++++++|| ++.|....+.+..+++++...
T Consensus 102 ~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~-- 173 (223)
T TIGR03740 102 DSRIDEVLNIVDLT------NTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ-- 173 (223)
T ss_pred HHHHHHHHHHcCCc------HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHC--
Confidence 011112211 11245567899999999999999999999999999 677777788888888887543
Q ss_pred CCEEEEEcCcccH-HHHHh
Q 004850 216 DLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 216 ~~~vil~SATl~~-~~~~~ 233 (727)
+..+|++||..+. ..+++
T Consensus 174 ~~tiii~sH~~~~~~~~~d 192 (223)
T TIGR03740 174 GITVILSSHILSEVQQLAD 192 (223)
T ss_pred CCEEEEEcCCHHHHHHhcC
Confidence 6789999998753 34554
No 238
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.05 E-value=2.2e-10 Score=112.62 Aligned_cols=130 Identities=23% Similarity=0.345 Sum_probs=80.4
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeee---
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRF--- 154 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~--- 154 (727)
+.+|+.+++.|+|||||||++..+. +. ... ..+-+.+--.+ +... ...+.. .++|....
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~--G~-~~~---~~G~i~~~g~~--~~~~--~~~~~~--------~i~~~~q~~~~ 86 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLT--GD-LKP---QQGEITLDGVP--VSDL--EKALSS--------LISVLNQRPYL 86 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh--cc-CCC---CCCEEEECCEE--HHHH--HHHHHh--------hEEEEccCCee
Confidence 5689999999999999999987643 22 111 11221111111 1000 001111 11221100
Q ss_pred ccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 155 EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 155 ~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
.........+..+|+|+++++.++++++.+++++|+|| +++|....+.++++++++. . +..+|++||..+.
T Consensus 87 ~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~--~-~~tii~~sh~~~~ 159 (178)
T cd03247 87 FDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL--K-DKTLIWITHHLTG 159 (178)
T ss_pred ecccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--C-CCEEEEEecCHHH
Confidence 00000011155799999999999999999999999999 6777777777888888762 2 6789999998864
No 239
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.05 E-value=3e-10 Score=117.31 Aligned_cols=149 Identities=18% Similarity=0.237 Sum_probs=98.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc---c-ccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---D-RRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
.+..|+.++|+|+|||||||++..+. +++.++... . ..+.+.++++.+......++.+++.....
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 104 (241)
T PRK10895 25 TVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQ 104 (241)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhh
Confidence 35789999999999999999987443 111111110 0 12345667776655555677776643211
Q ss_pred c--------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 142 V--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 142 ~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
. .+...+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 178 (241)
T PRK10895 105 IRDDLSAEQREDRANELMEEFHIE------HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKR 178 (241)
T ss_pred cccccCHHHHHHHHHHHHHHcCCH------HHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 0 000111110 11245667899999999999999999999999999 7777777777888
Q ss_pred HHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 206 LLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
+++.+.+. +..+|++||.++ ...+++
T Consensus 179 ~l~~~~~~--g~tiii~sH~~~~~~~~~d 205 (241)
T PRK10895 179 IIEHLRDS--GLGVLITDHNVRETLAVCE 205 (241)
T ss_pred HHHHHHhc--CCEEEEEEcCHHHHHHhcC
Confidence 88887543 678999999884 444443
No 240
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=2.3e-10 Score=117.86 Aligned_cols=155 Identities=17% Similarity=0.256 Sum_probs=99.2
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc----ccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
.+.+|+.++|+|+|||||||++..+. +++.++.... ..+.+.++++.+......++.+++.....
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 106 (237)
T PRK11614 27 HINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGF 106 (237)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhh
Confidence 35799999999999999999987432 1221111100 12245566666655555677777643211
Q ss_pred c-cc---cceec-eeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHh
Q 004850 142 V-TI---GEEVG-YSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (727)
Q Consensus 142 ~-~~---~~~vg-~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~ 213 (727)
. .. ...+. ....+... ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..+++++.+.
T Consensus 107 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (237)
T PRK11614 107 FAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ 186 (237)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHC
Confidence 0 00 00000 00000000 11245667899999999999999999999999999 677777778888888887543
Q ss_pred CCCCEEEEEcCccc-HHHHHh
Q 004850 214 RPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 214 ~~~~~vil~SATl~-~~~~~~ 233 (727)
+..+|++||.++ ...+++
T Consensus 187 --~~tiii~sH~~~~~~~~~d 205 (237)
T PRK11614 187 --GMTIFLVEQNANQALKLAD 205 (237)
T ss_pred --CCEEEEEeCcHHHHHhhCC
Confidence 688999999875 344444
No 241
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.05 E-value=2.2e-10 Score=117.22 Aligned_cols=149 Identities=22% Similarity=0.314 Sum_probs=95.7
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc------cccCceEEEEcccc--hhhhccHHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPR--RVAAMSVSRRVA 137 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~--~~~~~~v~~~v~ 137 (727)
.+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++++. .....++.+++.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~ 106 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIA 106 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHH
Confidence 35689999999999999999987432 222211110 11224556666662 233466666654
Q ss_pred Hhc---cccc----ccee--ceeeeeccc--cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHH
Q 004850 138 EEM---DVTI----GEEV--GYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (727)
Q Consensus 138 ~~~---~~~~----~~~v--g~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (727)
... +... ...+ .....+ .. ...+..+..+|+|+++++.++++++.++++++||| +++|......+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 185 (228)
T cd03257 107 EPLRIHGKLSKKEARKEAVLLLLVGV-GLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQIL 185 (228)
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHHC-CCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHH
Confidence 211 0000 0000 000000 11 11245667899999999999999999999999999 777778888888
Q ss_pred HHHHHHHHhCCCCEEEEEcCccc
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~ 227 (727)
..++++.+.. +..+|+.||.++
T Consensus 186 ~~l~~~~~~~-~~tii~~sH~~~ 207 (228)
T cd03257 186 DLLKKLQEEL-GLTLLFITHDLG 207 (228)
T ss_pred HHHHHHHHHc-CCEEEEEeCCHH
Confidence 9998876543 678999999985
No 242
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.05 E-value=3.4e-10 Score=115.61 Aligned_cols=144 Identities=18% Similarity=0.243 Sum_probs=95.5
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh-----------cCccCCC--c-cccCceEEEEcccchhhhccHHHHHHHhc---
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIET--P-DRRRKMMIACTQPRRVAAMSVSRRVAEEM--- 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~--~-~~~~~~~i~~t~p~~~~~~~v~~~v~~~~--- 140 (727)
+..|+.++|+|+|||||||++..+.= ++.++.. . ...+.+.++++.+.... .++.+++....
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~ 108 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIR 108 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhc
Confidence 57899999999999999999874331 1111110 0 01123455666554433 36666654211
Q ss_pred c--------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 141 D--------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 141 ~--------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
. ......+|.. ....+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..+++++
T Consensus 109 ~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 183 (225)
T PRK10247 109 NQQPDPAIFLDDLERFALP-----DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRY 183 (225)
T ss_pred CCChHHHHHHHHHHHcCCC-----hHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 0 0111112211 011245677899999999999999999999999999 777777788888888887
Q ss_pred HHhCCCCEEEEEcCcccH
Q 004850 211 LKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~~ 228 (727)
.+.. +..+|++||..+.
T Consensus 184 ~~~~-~~tvii~sh~~~~ 200 (225)
T PRK10247 184 VREQ-NIAVLWVTHDKDE 200 (225)
T ss_pred HHhc-CCEEEEEECChHH
Confidence 6644 6789999999864
No 243
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.05 E-value=3.5e-10 Score=125.73 Aligned_cols=153 Identities=20% Similarity=0.332 Sum_probs=105.2
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHH---------------HhcCccCCCc-------cccCceEEEEcccchh--hhccH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQF---------------VLEGVDIETP-------DRRRKMMIACTQPRRV--AAMSV 132 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~---------------ll~~~~~~~~-------~~~~~~~i~~t~p~~~--~~~~v 132 (727)
.+..|++++|+|++||||||+...+ ++++.++... -....+.++++.|-.. +.+++
T Consensus 31 ~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tI 110 (539)
T COG1123 31 EVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTI 110 (539)
T ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhH
Confidence 3679999999999999999987632 2222222110 1224567888887533 33555
Q ss_pred HHHHHHh--------------ccccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcC
Q 004850 133 SRRVAEE--------------MDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHER 196 (727)
Q Consensus 133 ~~~v~~~--------------~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher 196 (727)
-+.+.+- ...++...||...... .+..+..+|+|++||++++.+++.+|++||+|| .-+|
T Consensus 111 g~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~----~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLD 186 (539)
T COG1123 111 GDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPER----RDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALD 186 (539)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhh----hccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccC
Confidence 5444331 1233444555432111 145788999999999999999999999999999 3445
Q ss_pred hhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHhh
Q 004850 197 TLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (727)
Q Consensus 197 ~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~~ 234 (727)
..-...++++++++.++. +..+|++||++.+ ..+++.
T Consensus 187 vt~q~qIL~llk~l~~e~-g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 187 VTTQAQILDLLKDLQREL-GMAVLFITHDLGVVAELADR 224 (539)
T ss_pred HHHHHHHHHHHHHHHHHc-CcEEEEEcCCHHHHHHhcCe
Confidence 566677999999998766 8999999999964 555554
No 244
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.05 E-value=6.2e-10 Score=108.76 Aligned_cols=126 Identities=19% Similarity=0.301 Sum_probs=84.0
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCccC--CCc--c-ccCceEEEEcccchhhhccHHHHHHHhccccccceecee
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDI--ETP--D-RRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYS 151 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~--~~~--~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~ 151 (727)
.+..|+.++++|||||||||++...+.+.... ... . ....+.+ ..+ . .+ ...+|..
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~-~~q---------~-~~--------l~~~~L~ 77 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIF-IDQ---------L-QF--------LIDVGLG 77 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEE-EhH---------H-HH--------HHHcCCC
Confidence 36789999999999999999998654321111 000 0 0001111 111 1 11 1122211
Q ss_pred eeeccccccCccccccChHHHHHHHhccccccC--CeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 152 IRFEDCSSARTVLKYLTDGMLLREAMTDPLLER--YKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 152 ~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~--~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
. ...+..+..+|.|+++++.++++++.+ ++++++|| ++.+......+...++++.+ . +..+|++||..+
T Consensus 78 ~-----~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tvIivSH~~~ 150 (176)
T cd03238 78 Y-----LTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-L-GNTVILIEHNLD 150 (176)
T ss_pred c-----cccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHH
Confidence 0 013445678999999999999999999 99999999 67777778888888888754 3 789999999986
Q ss_pred H
Q 004850 228 A 228 (727)
Q Consensus 228 ~ 228 (727)
.
T Consensus 151 ~ 151 (176)
T cd03238 151 V 151 (176)
T ss_pred H
Confidence 4
No 245
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.05 E-value=3e-10 Score=117.24 Aligned_cols=143 Identities=17% Similarity=0.300 Sum_probs=95.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc-----cccCceEEEEcccchhhhccHHHHHHHhc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-----DRRRKMMIACTQPRRVAAMSVSRRVAEEM- 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v~~~~- 140 (727)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++....
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 103 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPL 103 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHH
Confidence 5689999999999999999987433 222111110 01224556676665555567777664211
Q ss_pred ---cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 141 ---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 141 ---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
+. .+...+|.. ...+..+..+|+|+++++.++++++.+++++|+|| ++.|......+..
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~ 177 (240)
T PRK09493 104 RVRGASKEEAEKQARELLAKVGLA------ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLK 177 (240)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCh------HHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 00 011111111 11245667899999999999999999999999999 6667777777888
Q ss_pred HHHHHHHhCCCCEEEEEcCcccH
Q 004850 206 LLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~~ 228 (727)
+++++.+. +..+|++||.++.
T Consensus 178 ~l~~~~~~--~~tiii~sH~~~~ 198 (240)
T PRK09493 178 VMQDLAEE--GMTMVIVTHEIGF 198 (240)
T ss_pred HHHHHHHc--CCEEEEEeCCHHH
Confidence 88887543 6789999999853
No 246
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.05 E-value=6e-10 Score=111.87 Aligned_cols=131 Identities=13% Similarity=0.240 Sum_probs=88.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh--------c------CccCCC--ccccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL--------E------GVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll--------~------~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
.+..|+.++|+|+|||||||++..+.= . +.++.. ....+.+.++++++......++.+++....
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 108 (202)
T cd03233 29 VVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFAL 108 (202)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhh
Confidence 367999999999999999999874321 0 111110 011223455666655555567777664322
Q ss_pred cccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCE
Q 004850 141 DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLK 218 (727)
Q Consensus 141 ~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~ 218 (727)
... .+..+..+|+|+++++.++++++.+++++|+|| +..|......+..+++++.+.. +..
T Consensus 109 ~~~----------------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~-~~t 171 (202)
T cd03233 109 RCK----------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVL-KTT 171 (202)
T ss_pred hhc----------------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhC-CCE
Confidence 100 344566799999999999999999999999999 6777777788888888876543 455
Q ss_pred EEEEcC
Q 004850 219 LVVMSA 224 (727)
Q Consensus 219 vil~SA 224 (727)
++++++
T Consensus 172 ~ii~~~ 177 (202)
T cd03233 172 TFVSLY 177 (202)
T ss_pred EEEEEc
Confidence 555544
No 247
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.05 E-value=3.2e-10 Score=113.45 Aligned_cols=141 Identities=20% Similarity=0.231 Sum_probs=92.3
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh-----------cCccCCCc--cccCceEEEEcccchhhhccHHHHHHHhccc--
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIETP--DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (727)
+.+|+.++|+|+|||||||++..+.= ++.++... ...+.+.++++++......++.+++......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 102 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG 102 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC
Confidence 57899999999999999999875321 11111100 0112344555554444446777766432110
Q ss_pred -------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHh
Q 004850 143 -------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (727)
Q Consensus 143 -------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~ 213 (727)
.....+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..+++++.+.
T Consensus 103 ~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 176 (198)
T TIGR01189 103 GAQRTIEDALAAVGLT------GFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176 (198)
T ss_pred CcHHHHHHHHHHcCCH------HHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 001111111 11245677899999999999999999999999999 667777777788888877433
Q ss_pred CCCCEEEEEcCcc
Q 004850 214 RPDLKLVVMSATL 226 (727)
Q Consensus 214 ~~~~~vil~SATl 226 (727)
+..+|++||..
T Consensus 177 --~~tii~~sH~~ 187 (198)
T TIGR01189 177 --GGIVLLTTHQD 187 (198)
T ss_pred --CCEEEEEEccc
Confidence 67899999975
No 248
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.05 E-value=2.8e-10 Score=119.11 Aligned_cols=155 Identities=20% Similarity=0.251 Sum_probs=100.4
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhc--------------CccCCCc--------cccCceEEEEcccchhhhccHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLE--------------GVDIETP--------DRRRKMMIACTQPRRVAAMSVSRR 135 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~--------------~~~~~~~--------~~~~~~~i~~t~p~~~~~~~v~~~ 135 (727)
+..|+.++|+|+|||||||++..+.=. +.++... ...+.+.++++.+......++.++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 106 (262)
T PRK09984 27 IHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLEN 106 (262)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHH
Confidence 578999999999999999998754311 1001000 001235567776655555677777
Q ss_pred HHHhcccc--c------------cceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChh
Q 004850 136 VAEEMDVT--I------------GEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTL 198 (727)
Q Consensus 136 v~~~~~~~--~------------~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~ 198 (727)
+....... . ...+......-+. ...+..+..+|+|+++|+.++++++.++++||+|| .++|..
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 186 (262)
T PRK09984 107 VLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPE 186 (262)
T ss_pred HHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHH
Confidence 75321000 0 0000000000011 11245667899999999999999999999999999 777778
Q ss_pred hHHHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 199 ATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 199 ~~d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
....+..+++++.+.. +..+|++||.++ ...+++
T Consensus 187 ~~~~l~~~l~~~~~~~-g~tvii~tH~~~~~~~~~d 221 (262)
T PRK09984 187 SARIVMDTLRDINQND-GITVVVTLHQVDYALRYCE 221 (262)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 8888899998886543 689999999986 355554
No 249
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=3.3e-10 Score=119.47 Aligned_cols=152 Identities=18% Similarity=0.280 Sum_probs=100.3
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccc-hhhhccHHHHHHHhc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPR-RVAAMSVSRRVAEEM- 140 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~- 140 (727)
.+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.+++++|. .+...++.+++....
T Consensus 29 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~ 108 (277)
T PRK13642 29 SITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGME 108 (277)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHH
Confidence 35789999999999999999988443 22222211 011234567777763 344567777775321
Q ss_pred --ccc---ccceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHH
Q 004850 141 --DVT---IGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLK 212 (727)
Q Consensus 141 --~~~---~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~ 212 (727)
+.. ....+.......+. ...+..+..+|+|+.+++.++++++.+++++|+|| .++|......++.+++++.+
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~ 188 (277)
T PRK13642 109 NQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKE 188 (277)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 100 00001000000011 11345677899999999999999999999999999 67777888889999988765
Q ss_pred hCCCCEEEEEcCcccHH
Q 004850 213 NRPDLKLVVMSATLEAE 229 (727)
Q Consensus 213 ~~~~~~vil~SATl~~~ 229 (727)
.. +.++|++||.++..
T Consensus 189 ~~-g~tiil~sH~~~~~ 204 (277)
T PRK13642 189 KY-QLTVLSITHDLDEA 204 (277)
T ss_pred hc-CCEEEEEeCCHHHH
Confidence 43 68999999998653
No 250
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.05 E-value=2.4e-09 Score=116.21 Aligned_cols=276 Identities=24% Similarity=0.260 Sum_probs=158.3
Q ss_pred CCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeecccccc
Q 004850 81 NQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSA 160 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~ 160 (727)
.+++.=+|||.||||--..+-+.... ++ + .--|+++.|..|++++... ++.+--..|...++..-...
T Consensus 191 RkIi~H~GPTNSGKTy~ALqrl~~ak--------sG--v-ycGPLrLLA~EV~~r~na~-gipCdL~TGeE~~~~~~~~~ 258 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRALQRLKSAK--------SG--V-YCGPLRLLAHEVYDRLNAL-GIPCDLLTGEERRFVLDNGN 258 (700)
T ss_pred heEEEEeCCCCCchhHHHHHHHhhhc--------cc--e-ecchHHHHHHHHHHHhhhc-CCCccccccceeeecCCCCC
Confidence 35677799999999987766554322 12 2 3468999999999988653 33333333433333222111
Q ss_pred CccccccChHHHHHHHhccccccCCeeEEeeccCc------ChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHE------RTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEahe------r~~~~d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
....+.+|-.+. ..-..+++.||||... --..+.-++++..+=.+...+.. -++ +..+
T Consensus 259 ~a~hvScTVEM~-------sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGeps------vldlV~~i-- 323 (700)
T KOG0953|consen 259 PAQHVSCTVEMV-------SVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPS------VLDLVRKI-- 323 (700)
T ss_pred cccceEEEEEEe-------ecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCch------HHHHHHHH--
Confidence 112222222211 1235689999999642 01223335554443222211100 001 1111
Q ss_pred hhcCCCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCe
Q 004850 234 YFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPV 313 (727)
Q Consensus 234 ~f~~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~ 313 (727)
....|. .+++++.+.-..--++ +.++.-..+-.+|+.+|=+ ++++|-.+...+++. ++.
T Consensus 324 -------~k~TGd--~vev~~YeRl~pL~v~---~~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~--------g~~ 382 (700)
T KOG0953|consen 324 -------LKMTGD--DVEVREYERLSPLVVE---ETALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKA--------GNH 382 (700)
T ss_pred -------HhhcCC--eeEEEeecccCcceeh---hhhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHh--------cCc
Confidence 112222 2333332211111111 1222222334578877766 467899999999886 356
Q ss_pred EEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCcccccccccc
Q 004850 314 KVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPIS 393 (727)
Q Consensus 314 ~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis 393 (727)
.+..+||+||++.|..--..|.+. ...-+|+||||....|++.. |+-||=+.+.|.. .-.+.+++
T Consensus 383 k~aVIYGsLPPeTr~aQA~~FNd~-----~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~Kys---------g~e~~~it 447 (700)
T KOG0953|consen 383 KCAVIYGSLPPETRLAQAALFNDP-----SNECDVLVASDAIGMGLNLN-IRRIIFYSLIKYS---------GRETEDIT 447 (700)
T ss_pred ceEEEecCCCCchhHHHHHHhCCC-----CCccceEEeecccccccccc-eeEEEEeecccCC---------cccceecc
Confidence 688999999988765433333321 11679999999999999985 8888877774432 23345999
Q ss_pred HhhHHhhhcccCCCC----CceEEEecchh
Q 004850 394 KASAHQRSGRAGRTQ----PGKCFRLYTEK 419 (727)
Q Consensus 394 ~~~~~qR~GRaGR~~----~G~~~~L~t~~ 419 (727)
.+++.|=+|||||.+ .|.+-+|+.++
T Consensus 448 ~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 448 VSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred HHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 999999999999983 48888888864
No 251
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.05 E-value=2.8e-10 Score=115.80 Aligned_cols=147 Identities=18% Similarity=0.301 Sum_probs=97.5
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc------cccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++....
T Consensus 28 i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~ 107 (220)
T TIGR02982 28 INPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMAL 107 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHH
Confidence 5789999999999999999987543 111111100 01234556666665444467776664221
Q ss_pred cc--------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHH
Q 004850 141 DV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (727)
Q Consensus 141 ~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (727)
.. .....+|.. ...+..+..+|+|+.++..++++++.+++++|+|| ++.|......+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~ 181 (220)
T TIGR02982 108 ELQPNLSYQEARERARAMLEAVGLG------DHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVV 181 (220)
T ss_pred HhccCCCHHHHHHHHHHHHHHcCCh------hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHH
Confidence 00 001111211 11245567899999999999999999999999999 666777777788
Q ss_pred HHHHHHHHhCCCCEEEEEcCcccHHHH
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLEAEKF 231 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~~~~~ 231 (727)
.+++++.+.. +..+|++||.++...+
T Consensus 182 ~~l~~~~~~~-~~tii~~sh~~~~~~~ 207 (220)
T TIGR02982 182 ELMQKLAREQ-GCTILIVTHDNRILDV 207 (220)
T ss_pred HHHHHHHHHc-CCEEEEEeCCHHHHhh
Confidence 8888876533 6899999999864333
No 252
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=3.5e-10 Score=114.59 Aligned_cols=148 Identities=20% Similarity=0.270 Sum_probs=97.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc-------cccCceEEEEcccchhhhccHHHHHHHh
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-------DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-------~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
+.. +.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++...
T Consensus 21 i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 99 (214)
T cd03297 21 LNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFG 99 (214)
T ss_pred Ecc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHH
Confidence 567 999999999999999987432 111111100 0112455666666544456776665422
Q ss_pred ccc-----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHH
Q 004850 140 MDV-----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (727)
Q Consensus 140 ~~~-----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~l 206 (727)
... .....+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......+.++
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 173 (214)
T cd03297 100 LKRKRNREDRISVDELLDLLGLD------HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE 173 (214)
T ss_pred HhhCCHHHHHHHHHHHHHHcCCH------hHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 110 111112211 11245667899999999999999999999999999 77777888889999
Q ss_pred HHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 207 LKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 207 l~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
++++.+.. +..+|++||.++. ..+++
T Consensus 174 l~~~~~~~-~~tiii~sH~~~~~~~~~d 200 (214)
T cd03297 174 LKQIKKNL-NIPVIFVTHDLSEAEYLAD 200 (214)
T ss_pred HHHHHHHc-CcEEEEEecCHHHHHHhcC
Confidence 98886543 6789999999853 44443
No 253
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.04 E-value=1.2e-09 Score=106.06 Aligned_cols=122 Identities=18% Similarity=0.261 Sum_probs=84.1
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCc----cccCceEEEEcccchhhhccHHHHHHHhccccccceeceee
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETP----DRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSI 152 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~ 152 (727)
.+.+|+.++|+|+|||||||++..+.=. ...... ...+.+.++++.+. ....++.+++...
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~~~~~i~~~~q~~~-~~~~tv~~nl~~~------------- 87 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGL-WPWGSGRIGMPEGEDLLFLPQRPY-LPLGTLREQLIYP------------- 87 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCceEEECCCceEEEECCCCc-cccccHHHHhhcc-------------
Confidence 3578999999999999999998754311 111110 01123444554443 2334555554321
Q ss_pred eeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 153 RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 153 ~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
....+|+|+.+++.++++++.+++++|+|| ++.|......+..+++++ +..+|++||..+.
T Consensus 88 ----------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsh~~~~ 150 (166)
T cd03223 88 ----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-----GITVISVGHRPSL 150 (166)
T ss_pred ----------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh-----CCEEEEEeCChhH
Confidence 235699999999999999999999999999 677766677777777664 4689999999753
No 254
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.04 E-value=4.4e-10 Score=117.77 Aligned_cols=150 Identities=22% Similarity=0.361 Sum_probs=98.2
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc------ccCceEEEEcccc--hhhhccHHHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD------RRRKMMIACTQPR--RVAAMSVSRRVAE 138 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~------~~~~~~i~~t~p~--~~~~~~v~~~v~~ 138 (727)
+..|+.++|+|+|||||||++..+. +++.++.... ..+.+.++++++. .....++.+++..
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~ 113 (265)
T TIGR02769 34 IEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGE 113 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHH
Confidence 5789999999999999999987432 2222111100 1224566777653 2234566665532
Q ss_pred hcc----c----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHH
Q 004850 139 EMD----V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (727)
Q Consensus 139 ~~~----~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (727)
... . .....+|.. ....+..+..+|+|+++++.++++++.+++++|+|| +++|......
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~~gl~-----~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~ 188 (265)
T TIGR02769 114 PLRHLTSLDESEQKARIAELLDMVGLR-----SEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAV 188 (265)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCC-----hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 110 0 011111210 011245667899999999999999999999999999 7777777888
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 203 LFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 203 ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
++.+++++.+.. +..+|++||.++. ..+++
T Consensus 189 l~~~l~~~~~~~-g~tiiivsH~~~~~~~~~d 219 (265)
T TIGR02769 189 ILELLRKLQQAF-GTAYLFITHDLRLVQSFCQ 219 (265)
T ss_pred HHHHHHHHHHhc-CcEEEEEeCCHHHHHHHhc
Confidence 899998887643 6789999999863 34444
No 255
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.04 E-value=5e-10 Score=111.66 Aligned_cols=127 Identities=14% Similarity=0.149 Sum_probs=84.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCc-cCCCc------------cccCceEEEEcccchhhhccHHHHHHHhcccc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGV-DIETP------------DRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~-~~~~~------------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (727)
.+..|+.++|+|+|||||||++..+.=... ..... ...+.+.++++.+......++.+++....
T Consensus 31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~--- 107 (194)
T cd03213 31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAA--- 107 (194)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHH---
Confidence 367899999999999999999875531110 01110 00112333333333333334444332110
Q ss_pred ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEE
Q 004850 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVV 221 (727)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil 221 (727)
.+..+|+|+++++.++++++.+++++++|| .++|......+..+++++.++ +..+|+
T Consensus 108 -------------------~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiii 166 (194)
T cd03213 108 -------------------KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT--GRTIIC 166 (194)
T ss_pred -------------------HhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEE
Confidence 001699999999999999999999999999 667777777888888887543 789999
Q ss_pred EcCccc
Q 004850 222 MSATLE 227 (727)
Q Consensus 222 ~SATl~ 227 (727)
+||.++
T Consensus 167 ~sh~~~ 172 (194)
T cd03213 167 SIHQPS 172 (194)
T ss_pred EecCch
Confidence 999875
No 256
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.04 E-value=4.2e-10 Score=115.08 Aligned_cols=155 Identities=15% Similarity=0.176 Sum_probs=99.3
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhc-------Cc-------cCCCccccCceEEEEcccchhhhccHHHHHHHhccc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLE-------GV-------DIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~-------~~-------~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (727)
.+..|+.++++|+|||||||++..+.=. .. ++......+.+.++++.+......++.+++......
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~ 108 (226)
T cd03234 29 HVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAIL 108 (226)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHh
Confidence 3578999999999999999998754311 00 000001123455666666655566787777532110
Q ss_pred cc----cc-----eece-eeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 143 TI----GE-----EVGY-SIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 143 ~~----~~-----~vg~-~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
.. .. .+.. ....... ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..++++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~ 188 (226)
T cd03234 109 RLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQ 188 (226)
T ss_pred hcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 00 00 0000 0000000 11245667899999999999999999999999999 67777778888888888
Q ss_pred HHHhCCCCEEEEEcCcc--cHHHHHh
Q 004850 210 VLKNRPDLKLVVMSATL--EAEKFQG 233 (727)
Q Consensus 210 l~~~~~~~~vil~SATl--~~~~~~~ 233 (727)
+.+. +..+|+.||.. +...+++
T Consensus 189 ~~~~--~~tiii~sh~~~~~~~~~~d 212 (226)
T cd03234 189 LARR--NRIVILTIHQPRSDLFRLFD 212 (226)
T ss_pred HHHC--CCEEEEEecCCCHHHHHhCC
Confidence 7543 67999999997 3455554
No 257
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.04 E-value=3.8e-10 Score=121.89 Aligned_cols=152 Identities=20% Similarity=0.334 Sum_probs=100.1
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhc---------------CccCCC--cc-----ccCceEEEEcccch--hhhccH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLE---------------GVDIET--PD-----RRRKMMIACTQPRR--VAAMSV 132 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~---------------~~~~~~--~~-----~~~~~~i~~t~p~~--~~~~~v 132 (727)
.|..|+.++|+|+|||||||++..+.-- +.++.. .. ..+.+.++++.|.. ....++
T Consensus 29 ~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv 108 (330)
T PRK15093 29 TLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERV 108 (330)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccH
Confidence 3578999999999999999998754311 111111 00 01246677777642 234555
Q ss_pred HHHHHHhcc-------------------ccccceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec
Q 004850 133 SRRVAEEMD-------------------VTIGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE 192 (727)
Q Consensus 133 ~~~v~~~~~-------------------~~~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE 192 (727)
.+.+..... ......+|.. .. ...+..+..+|+|+++|+.++++++.++++||+||
T Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~----~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDE 184 (330)
T PRK15093 109 GRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIK----DHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADE 184 (330)
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCC----ChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 555542110 0111122221 00 11245677899999999999999999999999999
Q ss_pred --cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 193 --AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 193 --aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
..+|......++.+++++.+.. +..+|++||.++. ..+++
T Consensus 185 Pts~LD~~~~~~i~~lL~~l~~~~-g~tii~itHdl~~v~~~~d 227 (330)
T PRK15093 185 PTNAMEPTTQAQIFRLLTRLNQNN-NTTILLISHDLQMLSQWAD 227 (330)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCC
Confidence 6777777888999999886543 7899999999853 34554
No 258
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=4e-10 Score=119.06 Aligned_cols=144 Identities=24% Similarity=0.347 Sum_probs=95.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc----cccCceEEEEcccch-hhhccHHHHHHHhc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP----DRRRKMMIACTQPRR-VAAMSVSRRVAEEM- 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~----~~~~~~~i~~t~p~~-~~~~~v~~~v~~~~- 140 (727)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.+++++|.. ....++.+.+....
T Consensus 33 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~ 112 (280)
T PRK13633 33 VKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPE 112 (280)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHh
Confidence 5789999999999999999987432 222222110 112345566776632 22234555553211
Q ss_pred --cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHH
Q 004850 141 --DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (727)
Q Consensus 141 --~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~l 206 (727)
+. .+...+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +.+|......+..+
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~gL~------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~ 186 (280)
T PRK13633 113 NLGIPPEEIRERVDESLKKVGMY------EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNT 186 (280)
T ss_pred hcCCCHHHHHHHHHHHHHHCCCH------hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 10 001111211 12345677899999999999999999999999999 67777888888888
Q ss_pred HHHHHHhCCCCEEEEEcCcccH
Q 004850 207 LKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 207 l~~l~~~~~~~~vil~SATl~~ 228 (727)
++++.+.. +..+|++||.++.
T Consensus 187 l~~l~~~~-g~tillvtH~~~~ 207 (280)
T PRK13633 187 IKELNKKY-GITIILITHYMEE 207 (280)
T ss_pred HHHHHHhc-CCEEEEEecChHH
Confidence 88876543 7899999999864
No 259
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.04 E-value=3.7e-10 Score=117.77 Aligned_cols=143 Identities=20% Similarity=0.274 Sum_probs=97.1
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC----------------ccccCceEEEEcccchhhhc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET----------------PDRRRKMMIACTQPRRVAAM 130 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~----------------~~~~~~~~i~~t~p~~~~~~ 130 (727)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+......
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 107 (257)
T PRK10619 28 ANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHM 107 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCC
Confidence 5789999999999999999987432 12211110 00123456777776555556
Q ss_pred cHHHHHHHhc----c----------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cC
Q 004850 131 SVSRRVAEEM----D----------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AH 194 (727)
Q Consensus 131 ~v~~~v~~~~----~----------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--ah 194 (727)
++.+++.... + ......+|.. . ...+..+..+|+|+++++.++++++.+++++|+|| ++
T Consensus 108 sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 182 (257)
T PRK10619 108 TVLENVMEAPIQVLGLSKQEARERAVKYLAKVGID----E-RAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSA 182 (257)
T ss_pred cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCC----h-hhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 7777764210 0 0111112211 0 00134567899999999999999999999999999 77
Q ss_pred cChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 195 ERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 195 er~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
+|......+..+++++.+. +..+|++||..+
T Consensus 183 LD~~~~~~l~~~l~~l~~~--g~tiiivsH~~~ 213 (257)
T PRK10619 183 LDPELVGEVLRIMQQLAEE--GKTMVVVTHEMG 213 (257)
T ss_pred CCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHH
Confidence 7777888888888887543 789999999875
No 260
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.04 E-value=3.8e-10 Score=129.13 Aligned_cols=149 Identities=18% Similarity=0.248 Sum_probs=101.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc--c--ccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP--D--RRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~--~--~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
.+..|+.++|+|||||||||++..+. +++.++... . ..+.+.++++.+......++.+++.....
T Consensus 26 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 105 (501)
T PRK10762 26 NVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGRE 105 (501)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccc
Confidence 35789999999999999999987432 122111110 0 12346677777655556677777643211
Q ss_pred c-----------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHH
Q 004850 142 V-----------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (727)
Q Consensus 142 ~-----------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (727)
. .....+|.. ...+..+..+|+|+++++.++++++.++++++||| +++|......
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 179 (501)
T PRK10762 106 FVNRFGRIDWKKMYAEADKLLARLNLR------FSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETES 179 (501)
T ss_pred cccccCccCHHHHHHHHHHHHHHcCCC------CCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHH
Confidence 0 001111111 11245677899999999999999999999999999 8888888889
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 203 LFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 203 ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
+..+++++... +..+|+.||.++ ...+++
T Consensus 180 l~~~l~~l~~~--~~tvii~sHd~~~~~~~~d 209 (501)
T PRK10762 180 LFRVIRELKSQ--GRGIVYISHRLKEIFEICD 209 (501)
T ss_pred HHHHHHHHHHC--CCEEEEEeCCHHHHHHhCC
Confidence 99999988543 678999999985 344444
No 261
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.04 E-value=3.9e-10 Score=129.19 Aligned_cols=148 Identities=19% Similarity=0.272 Sum_probs=102.3
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc----ccCceEEEEcccchhhhccHHHHHHHhcc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (727)
+..|+.++|+|+|||||||++..+. +++.++.... ....+.++++.+......++.+++.....
T Consensus 34 i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 113 (510)
T PRK15439 34 LHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK 113 (510)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc
Confidence 6799999999999999999987432 1111111100 01245677777665556677777643210
Q ss_pred --------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHH
Q 004850 142 --------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (727)
Q Consensus 142 --------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~ 211 (727)
......+|.. ...+..+..+|+|+++|+.++++++.+++++|+|| +++|......+..+++++.
T Consensus 114 ~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 187 (510)
T PRK15439 114 RQASMQKMKQLLAALGCQ------LDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELL 187 (510)
T ss_pred chHHHHHHHHHHHHcCCC------ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 0111222221 12355677899999999999999999999999999 7888888889999999875
Q ss_pred HhCCCCEEEEEcCcccH-HHHHh
Q 004850 212 KNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 212 ~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+. +..+|+.||.++. ..+++
T Consensus 188 ~~--g~tiiivtHd~~~~~~~~d 208 (510)
T PRK15439 188 AQ--GVGIVFISHKLPEIRQLAD 208 (510)
T ss_pred HC--CCEEEEEeCCHHHHHHhCC
Confidence 43 6899999999863 44443
No 262
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=4e-10 Score=120.99 Aligned_cols=156 Identities=17% Similarity=0.255 Sum_probs=99.1
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc-------------------cccCceEEEEcccc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-------------------DRRRKMMIACTQPR- 125 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-------------------~~~~~~~i~~t~p~- 125 (727)
.+..|+.++|+|+|||||||++..+. +++.++... ...+.+.+++++|.
T Consensus 48 ~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~ 127 (320)
T PRK13631 48 TFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEY 127 (320)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchh
Confidence 35789999999999999999987432 222211110 11234566777763
Q ss_pred hhhhccHHHHHHHhc---ccc---ccceeceeeeecccc--ccCccccccChHHHHHHHhccccccCCeeEEeec--cCc
Q 004850 126 RVAAMSVSRRVAEEM---DVT---IGEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHE 195 (727)
Q Consensus 126 ~~~~~~v~~~v~~~~---~~~---~~~~vg~~~~~~~~~--~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--ahe 195 (727)
.+...++.+++.... +.. ....+......-+.. ..+..+..+|+|+++|+.++++++.+++++|||| +++
T Consensus 128 ~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgL 207 (320)
T PRK13631 128 QLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGL 207 (320)
T ss_pred ccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCC
Confidence 222346666653211 100 000011000000111 1345667899999999999999999999999999 677
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHhh
Q 004850 196 RTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 196 r~~~~d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~~ 234 (727)
|......++++++++..+ +.++|++||.++ ...+++.
T Consensus 208 D~~~~~~l~~~L~~l~~~--g~TiiivtHd~~~~~~~adr 245 (320)
T PRK13631 208 DPKGEHEMMQLILDAKAN--NKTVFVITHTMEHVLEVADE 245 (320)
T ss_pred CHHHHHHHHHHHHHHHHC--CCEEEEEecCHHHHHHhCCE
Confidence 777788888998887543 789999999986 3455543
No 263
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.03 E-value=3.8e-10 Score=116.57 Aligned_cols=149 Identities=23% Similarity=0.348 Sum_probs=97.0
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhc---
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM--- 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~--- 140 (727)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+.... .++.+++....
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~ 104 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK 104 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc
Confidence 5789999999999999999987433 11111110 011234556666654443 46666554211
Q ss_pred cc------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHH
Q 004850 141 DV------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLK 212 (727)
Q Consensus 141 ~~------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~ 212 (727)
+. .....+|.. ....+..+..+|+|+.+++.++++++.+++++|+|| +++|......+...++++.+
T Consensus 105 ~~~~~~~~~~l~~~~l~-----~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 179 (241)
T PRK14250 105 GEKNVDVEYYLSIVGLN-----KEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKN 179 (241)
T ss_pred CcHHHHHHHHHHHcCCC-----HHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 00 011111110 001244567899999999999999999999999999 77777778888888888765
Q ss_pred hCCCCEEEEEcCcccH-HHHHh
Q 004850 213 NRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 213 ~~~~~~vil~SATl~~-~~~~~ 233 (727)
.. +..+|++||.++. ..+++
T Consensus 180 ~~-g~tii~~sH~~~~~~~~~d 200 (241)
T PRK14250 180 KM-NLTVIWITHNMEQAKRIGD 200 (241)
T ss_pred hC-CCEEEEEeccHHHHHHhCC
Confidence 43 6789999999863 44444
No 264
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=2.2e-10 Score=121.37 Aligned_cols=154 Identities=19% Similarity=0.249 Sum_probs=99.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-------ccccCceEEEEcccc-hhhhccHHHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-------PDRRRKMMIACTQPR-RVAAMSVSRRVAE 138 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-------~~~~~~~~i~~t~p~-~~~~~~v~~~v~~ 138 (727)
+.+|+.++|+|+|||||||++..+. +++.++.. ....+.+.+++++|. .+...++.++++.
T Consensus 29 i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~ 108 (288)
T PRK13643 29 VKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAF 108 (288)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHh
Confidence 5789999999999999999987432 22222210 011234567777762 2223477776643
Q ss_pred hc---ccc---ccceeceeeeeccc--cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 139 EM---DVT---IGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 139 ~~---~~~---~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
.. +.. ....+......-+. ...+..+..+|+|+++++.++++++.+++++|||| +++|......++.+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~ 188 (288)
T PRK13643 109 GPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFE 188 (288)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHH
Confidence 21 100 00001100000011 11246677899999999999999999999999999 7777777888888888
Q ss_pred HHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 209 EVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
++.+. +.++|++||.++ ...+++
T Consensus 189 ~l~~~--g~til~vtHd~~~~~~~~d 212 (288)
T PRK13643 189 SIHQS--GQTVVLVTHLMDDVADYAD 212 (288)
T ss_pred HHHHC--CCEEEEEecCHHHHHHhCC
Confidence 87643 789999999986 334554
No 265
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=3.6e-10 Score=119.57 Aligned_cols=150 Identities=21% Similarity=0.303 Sum_probs=100.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCC--C---ccccCceEEEEcccch-hhhccHHHHHHHh
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIE--T---PDRRRKMMIACTQPRR-VAAMSVSRRVAEE 139 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~--~---~~~~~~~~i~~t~p~~-~~~~~v~~~v~~~ 139 (727)
.+..|+.++|+|+|||||||++..+. +++.++. . ......+.++++.+.. ....++.+++...
T Consensus 28 ~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~ 107 (283)
T PRK13636 28 NIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFG 107 (283)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhH
Confidence 35799999999999999999987432 2222221 0 0112345677777632 2345677766431
Q ss_pred c---ccc----------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHH
Q 004850 140 M---DVT----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (727)
Q Consensus 140 ~---~~~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (727)
. +.. ....+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|......++
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~gL~------~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~ 181 (283)
T PRK13636 108 AVNLKLPEDEVRKRVDNALKRTGIE------HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181 (283)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCh------hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence 1 100 01111211 12356677899999999999999999999999999 777778888889
Q ss_pred HHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
++++++.+.. +..++++||.++. ..+++
T Consensus 182 ~~l~~l~~~~-g~tillvsH~~~~~~~~~d 210 (283)
T PRK13636 182 KLLVEMQKEL-GLTIIIATHDIDIVPLYCD 210 (283)
T ss_pred HHHHHHHHhC-CCEEEEEecCHHHHHHhCC
Confidence 9998886643 6799999999864 33443
No 266
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=4.2e-10 Score=118.68 Aligned_cols=149 Identities=19% Similarity=0.285 Sum_probs=99.1
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccc-hhhhccHHHHHHHhc--
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPR-RVAAMSVSRRVAEEM-- 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~-- 140 (727)
+..|+.++|+|+|||||||++..+. +++.++.. ......+.++++.+. .....++.+++....
T Consensus 27 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~ 106 (277)
T PRK13652 27 APRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPIN 106 (277)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHH
Confidence 5789999999999999999988543 12211111 011123556666653 233456666664211
Q ss_pred -ccc----------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHH
Q 004850 141 -DVT----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (727)
Q Consensus 141 -~~~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll 207 (727)
+.. ....+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|......+.+++
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l 180 (277)
T PRK13652 107 LGLDEETVAHRVSSALHMLGLE------ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFL 180 (277)
T ss_pred cCCCHHHHHHHHHHHHHHCCCh------hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 100 01111111 12355677899999999999999999999999999 677777788889999
Q ss_pred HHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 208 KEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 208 ~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+++.+.. +..+|++||.++. ..+++
T Consensus 181 ~~l~~~~-g~tvli~tH~~~~~~~~~d 206 (277)
T PRK13652 181 NDLPETY-GMTVIFSTHQLDLVPEMAD 206 (277)
T ss_pred HHHHHhc-CCEEEEEecCHHHHHHhCC
Confidence 8876643 6899999999863 44544
No 267
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.03 E-value=3.7e-10 Score=118.34 Aligned_cols=150 Identities=19% Similarity=0.274 Sum_probs=98.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhc-c
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM-D 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~-~ 141 (727)
.+..|+.++|+|+|||||||++..+. +++.++.. ......+.++++.+......++.+++.... .
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~ 108 (265)
T PRK10253 29 EIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYP 108 (265)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCccc
Confidence 35789999999999999999987432 11111110 001123556666665444456666654311 0
Q ss_pred c----------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHH
Q 004850 142 V----------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (727)
Q Consensus 142 ~----------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (727)
. .....+|.. ...+..+..+|+|+++++.++++++.+++++|+|| .++|......+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l 182 (265)
T PRK10253 109 HQPLFTRWRKEDEEAVTKAMQATGIT------HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDL 182 (265)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCCH------HHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 0 000111110 11356677899999999999999999999999999 67777778888
Q ss_pred HHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
+.++.++.+.. +..+|++||.++ ...+++
T Consensus 183 ~~~L~~l~~~~-~~tiii~tH~~~~~~~~~d 212 (265)
T PRK10253 183 LELLSELNREK-GYTLAAVLHDLNQACRYAS 212 (265)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 88888876543 678999999986 345554
No 268
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.03 E-value=4.7e-10 Score=117.03 Aligned_cols=150 Identities=18% Similarity=0.262 Sum_probs=98.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhccc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (727)
.+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++......
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 103 (258)
T PRK13548 24 TLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAP 103 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcc
Confidence 35689999999999999999987432 11111110 00112355666665544456777766432110
Q ss_pred -------------cccceeceeeeeccccccCccccccChHHHHHHHhccccc------cCCeeEEeec--cCcChhhHH
Q 004850 143 -------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLL------ERYKVIVLDE--AHERTLATD 201 (727)
Q Consensus 143 -------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll------~~~~~lIlDE--aher~~~~d 201 (727)
.....+|.. ...+..+..+|+|+.+|+.++++++ .+++++|+|| +++|.....
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~ 177 (258)
T PRK13548 104 HGLSRAEDDALVAAALAQVDLA------HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQH 177 (258)
T ss_pred cCCCcHHHHHHHHHHHHHcCCH------hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHH
Confidence 001111111 1135567789999999999999998 5999999999 778888888
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
.+..+++++.+.. +..+|++||.++. ..+++
T Consensus 178 ~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d 209 (258)
T PRK13548 178 HVLRLARQLAHER-GLAVIVVLHDLNLAARYAD 209 (258)
T ss_pred HHHHHHHHHHHhc-CCEEEEEECCHHHHHHhcC
Confidence 8999999886333 6789999999853 34444
No 269
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.03 E-value=3.4e-10 Score=115.18 Aligned_cols=147 Identities=18% Similarity=0.293 Sum_probs=96.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC--ccccCceEEEEcccchhhhccHHHHHHHhc---c
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEM---D 141 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~ 141 (727)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++++......++.+++.... +
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 104 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG 104 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC
Confidence 6789999999999999999987543 11111111 011223556676665555567777664321 1
Q ss_pred c----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 142 V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 142 ~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
. .....+|.. ...++.+..+|+|+.+++.++++++.+++++|+|| +++|......++.++++
T Consensus 105 ~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 178 (220)
T cd03263 105 LPKSEIKEEVELLLRVLGLT------DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILE 178 (220)
T ss_pred CCHHHHHHHHHHHHHHcCCH------HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 0 001111110 11245667899999999999999999999999999 66777777778888887
Q ss_pred HHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 210 VLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+.+ +..+|+.||.++. ..+++
T Consensus 179 ~~~---~~tii~~sH~~~~~~~~~d 200 (220)
T cd03263 179 VRK---GRSIILTTHSMDEAEALCD 200 (220)
T ss_pred Hhc---CCEEEEEcCCHHHHHHhcC
Confidence 643 4789999998853 34443
No 270
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=4.4e-10 Score=118.81 Aligned_cols=146 Identities=22% Similarity=0.323 Sum_probs=98.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh--------------cCccCCC---ccccCceEEEEcccc-hhhhccHHHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL--------------EGVDIET---PDRRRKMMIACTQPR-RVAAMSVSRRVAE 138 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll--------------~~~~~~~---~~~~~~~~i~~t~p~-~~~~~~v~~~v~~ 138 (727)
.+..|+.++|+|+|||||||++..+.= ++.++.. ....+.+.++++.|. .+...++.+++..
T Consensus 29 ~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~ 108 (282)
T PRK13640 29 SIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAF 108 (282)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHh
Confidence 357899999999999999999875431 1111110 011224556676663 3445677777642
Q ss_pred hc---cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHH
Q 004850 139 EM---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (727)
Q Consensus 139 ~~---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (727)
.. +. .....+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|......+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~L~------~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l 182 (282)
T PRK13640 109 GLENRAVPRPEMIKIVRDVLADVGML------DYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQI 182 (282)
T ss_pred hHHhCCCCHHHHHHHHHHHHHHCCCh------hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 11 10 011111211 12356677899999999999999999999999999 77777888888
Q ss_pred HHHHHHHHHhCCCCEEEEEcCcccHH
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLEAE 229 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~~~ 229 (727)
..+++++.... +..+|++||.++..
T Consensus 183 ~~~l~~l~~~~-g~tvli~tH~~~~~ 207 (282)
T PRK13640 183 LKLIRKLKKKN-NLTVISITHDIDEA 207 (282)
T ss_pred HHHHHHHHHhc-CCEEEEEecCHHHH
Confidence 99998876543 68999999998643
No 271
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.02 E-value=4e-10 Score=110.02 Aligned_cols=59 Identities=20% Similarity=0.350 Sum_probs=50.7
Q ss_pred cChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 167 LTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 167 lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
+|+|+.+++.++++++.+++++++|| +++|....+.+..+++++. . +..+|+.||.++.
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~--~~tii~~sh~~~~ 157 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-K--GKTVIVIAHRLST 157 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-C--CCEEEEEecCHHH
Confidence 99999999999999999999999999 6777777777888888763 2 5789999998853
No 272
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.02 E-value=4.8e-10 Score=120.88 Aligned_cols=154 Identities=20% Similarity=0.271 Sum_probs=101.0
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh--------------cCccCCCc--c-----ccCceEEEEcccc--hhhhccHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL--------------EGVDIETP--D-----RRRKMMIACTQPR--RVAAMSVS 133 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll--------------~~~~~~~~--~-----~~~~~~i~~t~p~--~~~~~~v~ 133 (727)
.+..|+.++|+|++||||||++..+.- ++.++... . ..+.+.++++.|. ....+++.
T Consensus 38 ~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~ 117 (330)
T PRK09473 38 SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVG 117 (330)
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHH
Confidence 357899999999999999999875431 11111110 0 0135677888773 22334555
Q ss_pred HHHHHhcc--------------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcCh
Q 004850 134 RRVAEEMD--------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERT 197 (727)
Q Consensus 134 ~~v~~~~~--------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~ 197 (727)
+.+..... ......+|... .....+..+..+|+|+++|+.++++++.++++||+|| ..+|.
T Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~---~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~ 194 (330)
T PRK09473 118 EQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE---ARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDV 194 (330)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC---hHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCH
Confidence 54432110 01112233210 0011245677899999999999999999999999999 67777
Q ss_pred hhHHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHhh
Q 004850 198 LATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (727)
Q Consensus 198 ~~~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~~ 234 (727)
.....++.+++++.+.. +..+|++||.++. ..+++.
T Consensus 195 ~~~~~i~~lL~~l~~~~-g~til~iTHdl~~~~~~~Dr 231 (330)
T PRK09473 195 TVQAQIMTLLNELKREF-NTAIIMITHDLGVVAGICDK 231 (330)
T ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhCCE
Confidence 77888999999887654 7899999999964 345543
No 273
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=5.2e-10 Score=120.47 Aligned_cols=154 Identities=20% Similarity=0.298 Sum_probs=99.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH---------------hcCccCCCcc-------ccCceEEEEcccc--hhhhccH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV---------------LEGVDIETPD-------RRRKMMIACTQPR--RVAAMSV 132 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l---------------l~~~~~~~~~-------~~~~~~i~~t~p~--~~~~~~v 132 (727)
.|..|++++|+|+|||||||++..++ +++.++.... ..+.+.+++++|. ....+++
T Consensus 29 ~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v 108 (326)
T PRK11022 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTV 108 (326)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCH
Confidence 36799999999999999999977432 1111111100 1124677787773 2233444
Q ss_pred HHHHHHhcc--------------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcC
Q 004850 133 SRRVAEEMD--------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHER 196 (727)
Q Consensus 133 ~~~v~~~~~--------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher 196 (727)
.+.+..... ......+|... .....+..+..+|+|+++|+.++++++.++++||+|| ..+|
T Consensus 109 ~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~---~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD 185 (326)
T PRK11022 109 GFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPD---PASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALD 185 (326)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC---hHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 443322110 11122233210 0011245677899999999999999999999999999 5667
Q ss_pred hhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHhh
Q 004850 197 TLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (727)
Q Consensus 197 ~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~~ 234 (727)
......++++++++.++. +..+|++||.++. ..+++.
T Consensus 186 ~~~~~~il~lL~~l~~~~-g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 186 VTIQAQIIELLLELQQKE-NMALVLITHDLALVAEAAHK 223 (326)
T ss_pred HHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 777778899999886654 7899999999964 455543
No 274
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.02 E-value=3.4e-10 Score=116.04 Aligned_cols=149 Identities=16% Similarity=0.207 Sum_probs=97.0
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc----ccCceEEEEcccchhhhccHHHHHHHhcc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (727)
+.+|+.++|+|+|||||||++..+. +++.++.... ..+.+.++++.+......++.+++.....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 102 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAA 102 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHh
Confidence 6799999999999999999987432 1111111100 12345666776665555677777643211
Q ss_pred --ccccceeceeee-eccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCC
Q 004850 142 --VTIGEEVGYSIR-FEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (727)
Q Consensus 142 --~~~~~~vg~~~~-~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~ 215 (727)
......+..... ++.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..++.++.+..
T Consensus 103 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~- 181 (230)
T TIGR03410 103 LPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEG- 181 (230)
T ss_pred cCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcC-
Confidence 000000000000 0000 12355677899999999999999999999999999 6777777777888888875533
Q ss_pred CCEEEEEcCccc
Q 004850 216 DLKLVVMSATLE 227 (727)
Q Consensus 216 ~~~vil~SATl~ 227 (727)
+..+|+.||.++
T Consensus 182 ~~tii~~sH~~~ 193 (230)
T TIGR03410 182 GMAILLVEQYLD 193 (230)
T ss_pred CcEEEEEeCCHH
Confidence 678999999985
No 275
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.02 E-value=4.7e-10 Score=128.71 Aligned_cols=154 Identities=16% Similarity=0.216 Sum_probs=100.7
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc----ccCceEEEEcccchhhhccHHHHHHHhc--
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEEM-- 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~-- 140 (727)
+.+|+.++|+|+|||||||++..+. +++.++.... ..+.+.++++.+......++.+++....
T Consensus 28 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 107 (510)
T PRK09700 28 VYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHL 107 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccc
Confidence 5789999999999999999987432 1221111100 1124566777665555567776664211
Q ss_pred -----ccc------ccceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHH
Q 004850 141 -----DVT------IGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (727)
Q Consensus 141 -----~~~------~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~l 206 (727)
+.. ....+......-+. ...+..+..+|+|+++|+.++++++.+++++|+|| +++|......+..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 187 (510)
T PRK09700 108 TKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI 187 (510)
T ss_pred ccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 000 00000000000001 12356677899999999999999999999999999 88888888889999
Q ss_pred HHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 207 LKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 207 l~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
++++.+. +..+|++||.++ ...+++
T Consensus 188 l~~l~~~--g~tiiivsHd~~~~~~~~d 213 (510)
T PRK09700 188 MNQLRKE--GTAIVYISHKLAEIRRICD 213 (510)
T ss_pred HHHHHhC--CCEEEEEeCCHHHHHHhCC
Confidence 9998543 688999999985 344443
No 276
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=4.9e-10 Score=118.75 Aligned_cols=150 Identities=21% Similarity=0.307 Sum_probs=100.4
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc-------cccCceEEEEcccc-hhhhccHHHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-------DRRRKMMIACTQPR-RVAAMSVSRRVAE 138 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-------~~~~~~~i~~t~p~-~~~~~~v~~~v~~ 138 (727)
+..|+.++|+|+|||||||++..+. +++.++... .....+.+++++|. .+...++.+++..
T Consensus 30 i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~ 109 (287)
T PRK13641 30 LEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEF 109 (287)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHH
Confidence 5789999999999999999988543 222222110 01124567777762 2323577776642
Q ss_pred hc---cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHH
Q 004850 139 EM---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (727)
Q Consensus 139 ~~---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (727)
.. +. .....+|.. ....+..+..+|+|+++|+.++++++.+++++|||| +++|......+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gL~-----~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l 184 (287)
T PRK13641 110 GPKNFGFSEDEAKEKALKWLKKVGLS-----EDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEM 184 (287)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCC-----hhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence 11 10 001111210 011356677899999999999999999999999999 77788888889
Q ss_pred HHHHHHHHHhCCCCEEEEEcCccc-HHHHHhh
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~-~~~~~~~ 234 (727)
..+++++.+ . +..+|++||.++ ...+++.
T Consensus 185 ~~~l~~l~~-~-g~tvlivsH~~~~~~~~~d~ 214 (287)
T PRK13641 185 MQLFKDYQK-A-GHTVILVTHNMDDVAEYADD 214 (287)
T ss_pred HHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCE
Confidence 999988753 2 789999999986 3555543
No 277
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=5.7e-10 Score=117.52 Aligned_cols=149 Identities=21% Similarity=0.322 Sum_probs=98.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc-----cccCceEEEEcccc-hhhhccHHHHHHHh
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-----DRRRKMMIACTQPR-RVAAMSVSRRVAEE 139 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-----~~~~~~~i~~t~p~-~~~~~~v~~~v~~~ 139 (727)
.+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+. .....++.+++...
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~ 103 (275)
T PRK13639 24 KAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFG 103 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHH
Confidence 35789999999999999999987432 222211100 01224556677653 22334666666421
Q ss_pred c---cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHH
Q 004850 140 M---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (727)
Q Consensus 140 ~---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (727)
. +. .....+|.. ...+..+..+|+|++++..++++++.+++++|+|| +++|......++
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~L~------~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~ 177 (275)
T PRK13639 104 PLNLGLSKEEVEKRVKEALKAVGME------GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIM 177 (275)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCc------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 1 00 011111211 12345677899999999999999999999999999 677778888899
Q ss_pred HHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
.+++++.+. +..+|++||.++. ..+++
T Consensus 178 ~~l~~l~~~--~~til~vtH~~~~~~~~~d 205 (275)
T PRK13639 178 KLLYDLNKE--GITIIISTHDVDLVPVYAD 205 (275)
T ss_pred HHHHHHHHC--CCEEEEEecCHHHHHHhCC
Confidence 999887543 7899999999863 34443
No 278
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=3.8e-10 Score=114.09 Aligned_cols=146 Identities=21% Similarity=0.257 Sum_probs=96.5
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc--cccCceEEEEcccchhhhccHHHHHHHhc---c
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP--DRRRKMMIACTQPRRVAAMSVSRRVAEEM---D 141 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~ 141 (727)
+.+| .++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++.... +
T Consensus 23 i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 101 (211)
T cd03264 23 LGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG 101 (211)
T ss_pred EcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC
Confidence 4568 99999999999999987443 112111110 01234556676665555567777664311 1
Q ss_pred c----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 142 V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 142 ~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
. .....+|.. ...+..+..+|+|+++++.++++++.+++++++|| +++|......+.+++++
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 175 (211)
T cd03264 102 IPSKEVKARVDEVLELVNLG------DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE 175 (211)
T ss_pred CCHHHHHHHHHHHHHHCCCH------HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 0 011111211 11245677899999999999999999999999999 78888888888899888
Q ss_pred HHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 210 VLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+.+ +..+|++||.++. ..+++
T Consensus 176 ~~~---~~tii~vsH~~~~~~~~~d 197 (211)
T cd03264 176 LGE---DRIVILSTHIVEDVESLCN 197 (211)
T ss_pred HhC---CCEEEEEcCCHHHHHHhCC
Confidence 753 3789999998863 33443
No 279
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.01 E-value=7.8e-10 Score=107.08 Aligned_cols=125 Identities=18% Similarity=0.306 Sum_probs=83.2
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeeccc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC 157 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~ 157 (727)
+..|+.+++.|++||||||++..+. +. ... . .+.+.+--++ +......+.. ...+||...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~--G~-~~~-~--~G~v~~~g~~--~~~~~~~~~~--------~~~i~~~~q---- 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILS--GL-YKP-D--SGEILVDGKE--VSFASPRDAR--------RAGIAMVYQ---- 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHh--CC-CCC-C--CeEEEECCEE--CCcCCHHHHH--------hcCeEEEEe----
Confidence 6799999999999999999998543 32 111 1 1221111111 1111111100 112344311
Q ss_pred cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 158 SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 158 ~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
+|+|+++++.++++++.+++++++|| .++|......+..+++++.+. +..+|++||..+ ...+++
T Consensus 83 ---------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiii~sh~~~~~~~~~d 150 (163)
T cd03216 83 ---------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ--GVAVIFISHRLDEVFEIAD 150 (163)
T ss_pred ---------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999 677777778888888887543 678999999985 344443
No 280
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=7e-10 Score=113.90 Aligned_cols=149 Identities=22% Similarity=0.275 Sum_probs=98.3
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhccc---
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (727)
+..|+.++|+|+|||||||++..+. +++.++.. ......+.+++..+......++.+++......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~ 102 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKL 102 (232)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCC
Confidence 5789999999999999999987543 11111111 01123455666666555455666665422110
Q ss_pred ----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
.+...+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +..|......+..+++++
T Consensus 103 ~~~~~~~~~~~~l~~~~l~------~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~ 176 (232)
T cd03300 103 PKAEIKERVAEALDLVQLE------GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRL 176 (232)
T ss_pred CHHHHHHHHHHHHHHcCCc------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 111112211 12345667899999999999999999999999999 566667777788888887
Q ss_pred HHhCCCCEEEEEcCcccH-HHHHh
Q 004850 211 LKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
.++. +.++|++||..+. ..+++
T Consensus 177 ~~~~-~~tiii~sh~~~~~~~~~d 199 (232)
T cd03300 177 QKEL-GITFVFVTHDQEEALTMSD 199 (232)
T ss_pred HHHc-CCEEEEEeCCHHHHHHhcC
Confidence 6543 6799999999853 44443
No 281
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.01 E-value=6.7e-10 Score=116.67 Aligned_cols=144 Identities=22% Similarity=0.270 Sum_probs=94.2
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccc-hhhhccHHHHHHHhc--
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPR-RVAAMSVSRRVAEEM-- 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~-- 140 (727)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.+++++|. .+...++.+++....
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~ 111 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLEN 111 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHh
Confidence 5799999999999999999987442 12211111 011224556676663 233334444432110
Q ss_pred -c----------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHH
Q 004850 141 -D----------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (727)
Q Consensus 141 -~----------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll 207 (727)
+ ..+...+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..++
T Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L 185 (269)
T PRK13648 112 HAVPYDEMHRRVSEALKQVDML------ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLV 185 (269)
T ss_pred cCCCHHHHHHHHHHHHHHcCCc------hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 0 0111112211 12345667899999999999999999999999999 677777788888888
Q ss_pred HHHHHhCCCCEEEEEcCcccH
Q 004850 208 KEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 208 ~~l~~~~~~~~vil~SATl~~ 228 (727)
+++.+.. +..+|++||.++.
T Consensus 186 ~~~~~~~-~~tiiivtH~~~~ 205 (269)
T PRK13648 186 RKVKSEH-NITIISITHDLSE 205 (269)
T ss_pred HHHHHhc-CCEEEEEecCchH
Confidence 8875533 6789999999853
No 282
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=4.3e-10 Score=117.17 Aligned_cols=154 Identities=19% Similarity=0.214 Sum_probs=97.1
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh-----------cCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhc---
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM--- 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~--- 140 (727)
+..|+.++|+|+|||||||++..+.= ++.++.. ....+.+.++++++......++.+++....
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~ 104 (255)
T PRK11231 25 LPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPW 104 (255)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchh
Confidence 57899999999999999999875431 1111100 001123556666655444456666654211
Q ss_pred ----cc---cccceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 141 ----DV---TIGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 141 ----~~---~~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
+. .....+.......+. ...+..+..+|+|+++++.++++++.+++++|+|| .++|....+.+.++++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l 184 (255)
T PRK11231 105 LSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184 (255)
T ss_pred hhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 00 000000000000001 11255677899999999999999999999999999 677777778888888887
Q ss_pred HHhCCCCEEEEEcCccc-HHHHHh
Q 004850 211 LKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
... +..+|++||.++ ...+++
T Consensus 185 ~~~--~~tiii~tH~~~~~~~~~d 206 (255)
T PRK11231 185 NTQ--GKTVVTVLHDLNQASRYCD 206 (255)
T ss_pred HHC--CCEEEEEECCHHHHHHhcC
Confidence 543 678999999986 345554
No 283
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.00 E-value=6.6e-10 Score=114.32 Aligned_cols=148 Identities=22% Similarity=0.317 Sum_probs=100.3
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhccc---
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (727)
+..|+.++|+|+|||||||++.... +++.+... ....+.+.+++..+......++.+++......
T Consensus 22 i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~ 101 (235)
T cd03299 22 VERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKV 101 (235)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCC
Confidence 5789999999999999999987432 11111111 01123566777776666566777776532110
Q ss_pred ----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
.....+|.. ...+..+..+|+|+.+++.++++++.+++++++|| +++|....+.+..+++++
T Consensus 102 ~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~ 175 (235)
T cd03299 102 DKKEIERKVLEIAEMLGID------HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKI 175 (235)
T ss_pred CHHHHHHHHHHHHHHcCCh------hHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 001111111 11345667899999999999999999999999999 677778888888988887
Q ss_pred HHhCCCCEEEEEcCcccH-HHHH
Q 004850 211 LKNRPDLKLVVMSATLEA-EKFQ 232 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~~-~~~~ 232 (727)
...+ +.++|++||.++. ..++
T Consensus 176 ~~~~-~~tili~tH~~~~~~~~~ 197 (235)
T cd03299 176 RKEF-GVTVLHVTHDFEEAWALA 197 (235)
T ss_pred HHhc-CCEEEEEecCHHHHHHhC
Confidence 6543 6799999998853 3444
No 284
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.00 E-value=6.1e-10 Score=111.15 Aligned_cols=147 Identities=14% Similarity=0.093 Sum_probs=89.3
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh-----------cCccCCCccccCceEEEEcccchhhhccHHHHHHHhcccc-cc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT-IG 145 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~-~~ 145 (727)
+..|+.++|+|+|||||||++..+.= ++.++.... ...+.+++..+......++.+++....... ..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~ 101 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSA 101 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhcccH
Confidence 56899999999999999999874431 111111100 112333443333334456666664321100 00
Q ss_pred ceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEE
Q 004850 146 EEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVM 222 (727)
Q Consensus 146 ~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~ 222 (727)
..+......-+. ...+..+..+|+|+++++.++++++.+++++++|| ++.|......+..+++.... .+..+|++
T Consensus 102 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~--~~~tiii~ 179 (195)
T PRK13541 102 ETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKAN--SGGIVLLS 179 (195)
T ss_pred HHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEE
Confidence 000000000001 11245567899999999999999999999999999 56666667777777765432 36889999
Q ss_pred cCccc
Q 004850 223 SATLE 227 (727)
Q Consensus 223 SATl~ 227 (727)
||..+
T Consensus 180 sh~~~ 184 (195)
T PRK13541 180 SHLES 184 (195)
T ss_pred eCCcc
Confidence 99875
No 285
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.00 E-value=9.8e-10 Score=110.15 Aligned_cols=61 Identities=13% Similarity=0.180 Sum_probs=53.0
Q ss_pred cccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 165 KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 165 ~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
..+|+|+++++.++++++.+++++|+|| .++|....+.++.+++++.+. +..+|+.||.++
T Consensus 103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~--~~tiii~sh~~~ 165 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE--GKSVLIITHYQR 165 (200)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC--CCEEEEEecCHH
Confidence 4699999999999999999999999999 677777788888888887543 678999999876
No 286
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.00 E-value=8.6e-10 Score=112.52 Aligned_cols=146 Identities=20% Similarity=0.207 Sum_probs=95.1
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh-----------cCccCCCccccCceEEEEcccchh--hhccHHHHHHHhcc---
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIETPDRRRKMMIACTQPRRV--AAMSVSRRVAEEMD--- 141 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~~~~~~~~~i~~t~p~~~--~~~~v~~~v~~~~~--- 141 (727)
+.+|+.++|+|+|||||||++....= ++.+.. ...+.+.++++++... ...++.+++.....
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 57899999999999999999875331 111110 0123455666655431 12455555432110
Q ss_pred --------------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 142 --------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 142 --------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
......+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|......+..
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~ 154 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLT------ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE 154 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCc------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 0001111111 11245667899999999999999999999999999 7777788888889
Q ss_pred HHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 206 LLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
+++++.++ +..+|+.||.++ ...+++
T Consensus 155 ~l~~~~~~--~~tvii~sH~~~~~~~~~d 181 (223)
T TIGR03771 155 LFIELAGA--GTAILMTTHDLAQAMATCD 181 (223)
T ss_pred HHHHHHHc--CCEEEEEeCCHHHHHHhCC
Confidence 88887543 689999999986 344443
No 287
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.00 E-value=1.8e-08 Score=114.98 Aligned_cols=122 Identities=24% Similarity=0.274 Sum_probs=88.4
Q ss_pred cHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCC
Q 004850 261 DYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKE 340 (727)
Q Consensus 261 ~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~ 340 (727)
++..+.+..+...|. ...+|||.+.+.++.+.+++.|.+. ++....|++.-...|-.-+-+.-.+|
T Consensus 411 ~k~~Aii~ei~~~~~--~GrPVLVgt~sI~~SE~ls~~L~~~---------gI~h~vLNAk~~~~EA~IIa~AG~~g--- 476 (764)
T PRK12326 411 EKNDAIVEHIAEVHE--TGQPVLVGTHDVAESEELAERLRAA---------GVPAVVLNAKNDAEEARIIAEAGKYG--- 476 (764)
T ss_pred HHHHHHHHHHHHHHH--cCCCEEEEeCCHHHHHHHHHHHHhC---------CCcceeeccCchHhHHHHHHhcCCCC---
Confidence 345566666666664 4568999999999999999999874 56666677764443322232333333
Q ss_pred CCCCCcEEEEecCccccCcccC---------------CeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccC
Q 004850 341 GGPPGRKIVVSTNIAETSLTID---------------GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAG 405 (727)
Q Consensus 341 ~~~~~~kvlvaTniAe~gitIp---------------~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaG 405 (727)
.|.||||.|.||-||. |=-|||-+.. +.|.--=.|=.||||
T Consensus 477 ------aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTer------------------heSrRID~QLrGRaG 532 (764)
T PRK12326 477 ------AVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGR------------------HRSERLDNQLRGRAG 532 (764)
T ss_pred ------cEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccC------------------CchHHHHHHHhcccc
Confidence 7999999999999986 3347777666 667666779999999
Q ss_pred CC-CCceEEEecchhh
Q 004850 406 RT-QPGKCFRLYTEKS 420 (727)
Q Consensus 406 R~-~~G~~~~L~t~~~ 420 (727)
|. .||.+-.+.|-++
T Consensus 533 RQGDpGss~f~lSleD 548 (764)
T PRK12326 533 RQGDPGSSVFFVSLED 548 (764)
T ss_pred cCCCCCceeEEEEcch
Confidence 99 8998777776443
No 288
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.99 E-value=6.5e-10 Score=115.87 Aligned_cols=154 Identities=21% Similarity=0.266 Sum_probs=97.1
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc---cccCceEEEEcccchhhhccHHHHHHHhcc-c
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---DRRRKMMIACTQPRRVAAMSVSRRVAEEMD-V 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-~ 142 (727)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++++......++.+++..... .
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 103 (256)
T TIGR03873 24 APPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPH 103 (256)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhh
Confidence 5689999999999999999988542 111111110 011235566666543444567776643110 0
Q ss_pred -cc-c-------ceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 143 -TI-G-------EEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 143 -~~-~-------~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
.. . ..+......-.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|....+.+..+++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 183 (256)
T TIGR03873 104 RSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183 (256)
T ss_pred hhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 00 0 000000000001 12345667899999999999999999999999999 677777788888988887
Q ss_pred HHhCCCCEEEEEcCcccH-HHHHh
Q 004850 211 LKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
.+. +..+|++||.++. ..+++
T Consensus 184 ~~~--~~tiii~sH~~~~~~~~~d 205 (256)
T TIGR03873 184 AAT--GVTVVAALHDLNLAASYCD 205 (256)
T ss_pred Hhc--CCEEEEEeCCHHHHHHhCC
Confidence 543 6789999999853 34443
No 289
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.99 E-value=7.6e-10 Score=114.79 Aligned_cols=148 Identities=21% Similarity=0.301 Sum_probs=97.0
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH----------hcCccCCCc---cccCceEEEEcccchhhhccHHHHHHHhccc--
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV----------LEGVDIETP---DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l----------l~~~~~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (727)
+..|++++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++......
T Consensus 19 i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~ 98 (248)
T PRK03695 19 VRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKT 98 (248)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccCC
Confidence 6799999999999999999987432 111111110 0012345566655444455666665432110
Q ss_pred ----------cccceeceeeeeccccccCccccccChHHHHHHHhcccccc-------CCeeEEeec--cCcChhhHHHH
Q 004850 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLE-------RYKVIVLDE--AHERTLATDVL 203 (727)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~-------~~~~lIlDE--aher~~~~d~l 203 (727)
.+...+|.. ...+..+..+|+|+.+++.++++++. +++++|+|| .++|......+
T Consensus 99 ~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l 172 (248)
T PRK03695 99 RTEAVASALNEVAEALGLD------DKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAAL 172 (248)
T ss_pred CcHHHHHHHHHHHHHcCCH------hHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHH
Confidence 001111111 11245667899999999999999986 679999999 77777888888
Q ss_pred HHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
..+++++.+. +..+|++||.++ ...+++
T Consensus 173 ~~~L~~~~~~--~~tvi~~sH~~~~~~~~~d 201 (248)
T PRK03695 173 DRLLSELCQQ--GIAVVMSSHDLNHTLRHAD 201 (248)
T ss_pred HHHHHHHHhC--CCEEEEEecCHHHHHHhCC
Confidence 8888887543 689999999986 455554
No 290
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.99 E-value=9.2e-10 Score=113.40 Aligned_cols=155 Identities=19% Similarity=0.230 Sum_probs=99.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc-cccCceEEEEcccchhhhccHHHHHHHhccc---
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (727)
+..|++++|+|+|||||||++..+. +++.++... ...+.+.+++..+......++.+++......
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~ 102 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKH 102 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCC
Confidence 6789999999999999999987543 111111110 1123456777777666556777766432110
Q ss_pred cc---cceeceee-eeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCC
Q 004850 143 TI---GEEVGYSI-RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPD 216 (727)
Q Consensus 143 ~~---~~~vg~~~-~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~ 216 (727)
.. ...+.... ++.-....+..+..+|+|+.+++.++++++.+++++|+|| .++|....+.+..+++++.... +
T Consensus 103 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~-~ 181 (237)
T TIGR00968 103 PKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEV-H 181 (237)
T ss_pred CHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-C
Confidence 00 00000000 0000011245566799999999999999999999999999 6777777778888888875532 6
Q ss_pred CEEEEEcCcccH-HHHHh
Q 004850 217 LKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 217 ~~vil~SATl~~-~~~~~ 233 (727)
..+|+.||..+. ..+++
T Consensus 182 ~tvli~sH~~~~~~~~~d 199 (237)
T TIGR00968 182 VTTVFVTHDQEEAMEVAD 199 (237)
T ss_pred CEEEEEeCCHHHHHhhcC
Confidence 799999998853 44444
No 291
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.98 E-value=8.2e-10 Score=113.69 Aligned_cols=156 Identities=18% Similarity=0.227 Sum_probs=95.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh-----------cCccCCC--ccccCceEEEEcc-cchhhhccHHHHHHHhc--
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIET--PDRRRKMMIACTQ-PRRVAAMSVSRRVAEEM-- 140 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~--~~~~~~~~i~~t~-p~~~~~~~v~~~v~~~~-- 140 (727)
.+..|+.++|+|+|||||||++..+.= ++.+... ....+.+.+++.+ +......++.+.+....
T Consensus 43 ~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~ 122 (236)
T cd03267 43 TIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAI 122 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHH
Confidence 467999999999999999999885431 1111000 0011233444434 33334456665553211
Q ss_pred -ccc---ccceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHh
Q 004850 141 -DVT---IGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (727)
Q Consensus 141 -~~~---~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~ 213 (727)
+.. ....+......-.. ...++.+..+|+|+.+++.++++++.+++++|+|| +++|......+.++++++.+.
T Consensus 123 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 202 (236)
T cd03267 123 YDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE 202 (236)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 100 00000000000001 11345677899999999999999999999999999 777778888888888887654
Q ss_pred CCCCEEEEEcCcccH-HHHHh
Q 004850 214 RPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 214 ~~~~~vil~SATl~~-~~~~~ 233 (727)
. +..+|+.||..+. ..+++
T Consensus 203 ~-~~tiiivsH~~~~~~~~~d 222 (236)
T cd03267 203 R-GTTVLLTSHYMKDIEALAR 222 (236)
T ss_pred C-CCEEEEEecCHHHHHHhCC
Confidence 3 6789999999853 44443
No 292
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.98 E-value=8.5e-10 Score=125.97 Aligned_cols=149 Identities=16% Similarity=0.230 Sum_probs=100.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc----cccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP----DRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
.+.+|+.++|+|+|||||||++..+. +++.++... ...+.+.++++++......++.+++.....
T Consensus 20 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 99 (491)
T PRK10982 20 KVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRY 99 (491)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccc
Confidence 35789999999999999999987432 122111110 002346677777665556778777653210
Q ss_pred -c-c--------------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHH
Q 004850 142 -V-T--------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (727)
Q Consensus 142 -~-~--------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (727)
. . ....+|. ....+..+..+|+|+++|+.++++++.+++++|+|| +++|......+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l 173 (491)
T PRK10982 100 PTKGMFVDQDKMYRDTKAIFDELDI------DIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHL 173 (491)
T ss_pred cccccccCHHHHHHHHHHHHHHcCC------CCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Confidence 0 0 0001111 012355677899999999999999999999999999 78888888888
Q ss_pred HHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
..+++++.+. +..+|++||.++. ..+++
T Consensus 174 ~~~l~~l~~~--g~tvii~tH~~~~~~~~~d 202 (491)
T PRK10982 174 FTIIRKLKER--GCGIVYISHKMEEIFQLCD 202 (491)
T ss_pred HHHHHHHHhC--CCEEEEEecCHHHHHHhCC
Confidence 8989887543 7799999999853 34443
No 293
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.98 E-value=6.3e-10 Score=120.49 Aligned_cols=149 Identities=19% Similarity=0.342 Sum_probs=111.4
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHH-----------HhcCccC--CCcc--ccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDI--ETPD--RRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~--~~~~--~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
.+..|++.++.|+||+||||++... .+++... .++. ...+++++.++...+..++|++++.-...
T Consensus 26 ~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e 105 (501)
T COG3845 26 SVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLE 105 (501)
T ss_pred eecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCc
Confidence 3678999999999999999998732 2233211 1111 23467889999999999999999854332
Q ss_pred cc----------------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHH
Q 004850 142 VT----------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (727)
Q Consensus 142 ~~----------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (727)
.. +...+|.. ..++..+..+|-|..||+-+-++++.++++||||| +.+-+...+.+
T Consensus 106 ~~~~~~~~~~~~~~~i~~l~~~yGl~------vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~l 179 (501)
T COG3845 106 PSKGGLIDRRQARARIKELSERYGLP------VDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADEL 179 (501)
T ss_pred cccccccCHHHHHHHHHHHHHHhCCC------CCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 11 11222222 23456777899999999999999999999999999 77788889999
Q ss_pred HHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
+..++.+.+. +..||++||-++ +..+++
T Consensus 180 f~~l~~l~~~--G~tIi~ITHKL~Ev~~iaD 208 (501)
T COG3845 180 FEILRRLAAE--GKTIIFITHKLKEVMAIAD 208 (501)
T ss_pred HHHHHHHHHC--CCEEEEEeccHHHHHHhhC
Confidence 9999988766 899999999995 455554
No 294
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=8.7e-10 Score=115.91 Aligned_cols=148 Identities=16% Similarity=0.274 Sum_probs=94.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCC--Cc---cccCceEEEEcccch-hhhccHHHHHHHh-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIE--TP---DRRRKMMIACTQPRR-VAAMSVSRRVAEE- 139 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~--~~---~~~~~~~i~~t~p~~-~~~~~v~~~v~~~- 139 (727)
+..|+.++|+|+|||||||++..+. +++.++. .. ...+.+.++++.+.. ....++.+++...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~ 103 (271)
T PRK13638 24 FSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSL 103 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHH
Confidence 5689999999999999999987432 2222111 00 011235566666532 2222344443221
Q ss_pred --ccc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 140 --MDV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 140 --~~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
.+. .....+|.. ...+..+..+|+|+.+|+.++++++.+++++|+|| +++|......++.
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~ 177 (271)
T PRK13638 104 RNLGVPEAEITRRVDEALTLVDAQ------HFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIA 177 (271)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCH------hHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 110 011111211 11245667899999999999999999999999999 7777788888999
Q ss_pred HHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+++++... +..+|++||.++. ..+++
T Consensus 178 ~l~~~~~~--g~tii~vtH~~~~~~~~~d 204 (271)
T PRK13638 178 IIRRIVAQ--GNHVIISSHDIDLIYEISD 204 (271)
T ss_pred HHHHHHHC--CCEEEEEeCCHHHHHHhCC
Confidence 99887643 6789999999863 34443
No 295
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.98 E-value=8.6e-10 Score=115.67 Aligned_cols=144 Identities=21% Similarity=0.306 Sum_probs=91.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC--c-cccCceEEEEcccch--hhhccHHHHHHHhc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--P-DRRRKMMIACTQPRR--VAAMSVSRRVAEEM- 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~-~~~~~~~i~~t~p~~--~~~~~v~~~v~~~~- 140 (727)
+..|+.++|+|+|||||||++..+. +++.++.. . ...+.+.++++++.. ....++.+.+....
T Consensus 36 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 115 (267)
T PRK15112 36 LREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLR 115 (267)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHH
Confidence 5789999999999999999987432 12211111 0 011245566666531 12223333332110
Q ss_pred -c------------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 141 -D------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 141 -~------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
. ......+|.. ....+..+..+|+|+++++.++++++.+++++|||| +++|......+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 190 (267)
T PRK15112 116 LNTDLEPEQREKQIIETLRQVGLL-----PDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN 190 (267)
T ss_pred hccCCCHHHHHHHHHHHHHHcCCC-----hHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHH
Confidence 0 0111122210 011234567899999999999999999999999999 7777777788888
Q ss_pred HHHHHHHhCCCCEEEEEcCccc
Q 004850 206 LLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~ 227 (727)
++.++.+.. +..+|++||.++
T Consensus 191 ~l~~~~~~~-g~tviivsH~~~ 211 (267)
T PRK15112 191 LMLELQEKQ-GISYIYVTQHLG 211 (267)
T ss_pred HHHHHHHHc-CcEEEEEeCCHH
Confidence 888876543 678999999875
No 296
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=6.1e-10 Score=118.21 Aligned_cols=156 Identities=17% Similarity=0.230 Sum_probs=97.7
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC--------ccccCceEEEEcccc-hhhhccHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--------PDRRRKMMIACTQPR-RVAAMSVSRRV 136 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--------~~~~~~~~i~~t~p~-~~~~~~v~~~v 136 (727)
.+..|++++|+|+|||||||++..+. +++.++.. ....+.+.++++.|. .....++.+++
T Consensus 33 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl 112 (289)
T PRK13645 33 TFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDI 112 (289)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHH
Confidence 35789999999999999999987432 22221110 001123556666652 12223566655
Q ss_pred HHhc---ccc---ccceeceeeeeccc--cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHH
Q 004850 137 AEEM---DVT---IGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (727)
Q Consensus 137 ~~~~---~~~---~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~l 206 (727)
.... +.. ....+.......+. ...+..+..+|+|+++|+.++++++.+++++|||| +++|......++.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~ 192 (289)
T PRK13645 113 AFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINL 192 (289)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 3211 100 00001000000011 11245667899999999999999999999999999 77788888889999
Q ss_pred HHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 207 LKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 207 l~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
++++.+.. +..+|+.||.++. ..+++
T Consensus 193 l~~~~~~~-~~tiiiisH~~~~~~~~~d 219 (289)
T PRK13645 193 FERLNKEY-KKRIIMVTHNMDQVLRIAD 219 (289)
T ss_pred HHHHHHhc-CCEEEEEecCHHHHHHhCC
Confidence 98886543 6799999999853 44443
No 297
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.97 E-value=1.4e-09 Score=112.88 Aligned_cols=147 Identities=18% Similarity=0.264 Sum_probs=94.0
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCc-cCCCc----cccCceEEEEcccchhhh--ccHHHHHHHhcc------ccc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGV-DIETP----DRRRKMMIACTQPRRVAA--MSVSRRVAEEMD------VTI 144 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~-~~~~~----~~~~~~~i~~t~p~~~~~--~~v~~~v~~~~~------~~~ 144 (727)
+..|+.++|+|+|||||||++..+. +. ..... .....+.++++.+..... .++.+.+....+ ...
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~--Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVL--GLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPA 104 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHh--CCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHH
Confidence 5789999999999999999988543 22 01110 012245556665432221 233333211000 001
Q ss_pred cceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEE
Q 004850 145 GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVM 222 (727)
Q Consensus 145 ~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~ 222 (727)
...+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..+++++.+.. +..+|++
T Consensus 105 l~~~gl~------~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-g~tiiiv 177 (251)
T PRK09544 105 LKRVQAG------HLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRREL-DCAVLMV 177 (251)
T ss_pred HHHcCCh------HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 1112211 11245677899999999999999999999999999 7777777788888888876543 6789999
Q ss_pred cCcccH-HHHHh
Q 004850 223 SATLEA-EKFQG 233 (727)
Q Consensus 223 SATl~~-~~~~~ 233 (727)
||.++. ..+++
T Consensus 178 sH~~~~i~~~~d 189 (251)
T PRK09544 178 SHDLHLVMAKTD 189 (251)
T ss_pred ecCHHHHHHhCC
Confidence 999863 34443
No 298
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.97 E-value=2.4e-08 Score=115.69 Aligned_cols=303 Identities=15% Similarity=0.193 Sum_probs=163.5
Q ss_pred CCCchHHHHHHHHhhhcC----CEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHh
Q 004850 64 SLPVWQQKEEFLQVLKAN----QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 64 ~lp~~~~q~~ii~~i~~g----~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
.+.....|+.+.+.|... ....+.|-||||||-.+.+.+-+-.. . +.+.++++|-.-+ .-++.+++...
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~--~--GkqvLvLVPEI~L---tpq~~~rf~~r 268 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA--Q--GKQVLVLVPEIAL---TPQLLARFKAR 268 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH--c--CCEEEEEeccccc---hHHHHHHHHHH
Confidence 345667788888877655 67888999999999988876544321 1 1224444443332 23444555554
Q ss_pred ccccccceeceeeeeccccccCccccccChHHHHHHHhc-------------ccc---ccCCeeEEeeccCcChhhHHH-
Q 004850 140 MDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMT-------------DPL---LERYKVIVLDEAHERTLATDV- 202 (727)
Q Consensus 140 ~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~-------------~~l---l~~~~~lIlDEaher~~~~d~- 202 (727)
++.++...- ..+|++++.+.+.. .++ +.+..+||+||=|+.+.-.+.
T Consensus 269 Fg~~v~vlH----------------S~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~~LGLIIvDEEHD~sYKq~~~ 332 (730)
T COG1198 269 FGAKVAVLH----------------SGLSPGERYRVWRRARRGEARVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEDG 332 (730)
T ss_pred hCCChhhhc----------------ccCChHHHHHHHHHHhcCCceEEEEechhhcCchhhccEEEEeccccccccCCcC
Confidence 443322110 02445554443321 122 789999999998865543322
Q ss_pred ---HHHHHHHHHHhCCCCEEEEEcCcccHHHHHhhhcC-CCeeeeCCCcc---ceeeeeccCC--c--cc--HHHHHHHH
Q 004850 203 ---LFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYG-APLMKVPGRLH---PVEIFYTQEP--E--RD--YLEAAIRT 269 (727)
Q Consensus 203 ---ll~ll~~l~~~~~~~~vil~SATl~~~~~~~~f~~-~p~i~v~g~~~---~v~~~y~~~~--~--~~--~~~~~~~~ 269 (727)
-...+..+..+..+..+||-|||-..+.+.+-..+ ...+.+..|.. +-.+..++.. . .+ .-..+++.
T Consensus 333 prYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~ 412 (730)
T COG1198 333 PRYHARDVAVLRAKKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEA 412 (730)
T ss_pred CCcCHHHHHHHHHHHhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHH
Confidence 11112222223337899999999988776654322 12222322211 1111111110 0 00 00111111
Q ss_pred HHHHhh---------------------------------------------------cC-------C--CCC-EEEecCC
Q 004850 270 VVQIHM---------------------------------------------------CE-------P--SGD-ILVFLTG 288 (727)
Q Consensus 270 l~~i~~---------------------------------------------------~~-------~--~g~-iLVFl~~ 288 (727)
+.+-.. .. + .+. +-.|-+|
T Consensus 413 i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~G 492 (730)
T COG1198 413 IRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPG 492 (730)
T ss_pred HHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEeccc
Confidence 111000 00 0 122 3333344
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHH--HhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEE
Q 004850 289 EEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAM--QQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVY 366 (727)
Q Consensus 289 ~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~--r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~ 366 (727)
. +++.+.|... .|+..++.+-++..... -...+..|.+| +..|||-|.+.+-|.++|+|+.
T Consensus 493 t---erieeeL~~~-------FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~g-------e~dILiGTQmiaKG~~fp~vtL 555 (730)
T COG1198 493 T---ERIEEELKRL-------FPGARIIRIDSDTTRRKGALEDLLDQFANG-------EADILIGTQMIAKGHDFPNVTL 555 (730)
T ss_pred H---HHHHHHHHHH-------CCCCcEEEEccccccchhhHHHHHHHHhCC-------CCCeeecchhhhcCCCcccceE
Confidence 3 3444555544 26778888888766433 34568888888 8899999999999999999987
Q ss_pred EE--cCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEE
Q 004850 367 VI--DPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFR 414 (727)
Q Consensus 367 VI--d~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~ 414 (727)
|. |.|. ..+.|..+.. --.-.-+.|=+|||||. .+|.++-
T Consensus 556 Vgvl~aD~---~L~~~DfRA~-----Er~fqll~QvaGRAgR~~~~G~VvI 598 (730)
T COG1198 556 VGVLDADT---GLGSPDFRAS-----ERTFQLLMQVAGRAGRAGKPGEVVI 598 (730)
T ss_pred EEEEechh---hhcCCCcchH-----HHHHHHHHHHHhhhccCCCCCeEEE
Confidence 54 4433 1122222211 12234478999999999 8888764
No 299
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.97 E-value=6.5e-10 Score=130.20 Aligned_cols=151 Identities=23% Similarity=0.295 Sum_probs=103.2
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc------cccCceEEEEcccc--hhhhccHHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPR--RVAAMSVSRRVA 137 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~--~~~~~~v~~~v~ 137 (727)
.+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.|. .....++.+.+.
T Consensus 346 ~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~ 425 (623)
T PRK10261 346 DLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIM 425 (623)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHH
Confidence 45799999999999999999987543 222212110 01234667777763 334467777665
Q ss_pred Hhccc--------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHH
Q 004850 138 EEMDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (727)
Q Consensus 138 ~~~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (727)
..... .+...+|.. ....+..+..+|+|+++|+.++++++.++++||+|| +++|.....
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~L~~~gL~-----~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~ 500 (623)
T PRK10261 426 EPLRVHGLLPGKAAAARVAWLLERVGLL-----PEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRG 500 (623)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHcCCC-----HHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 42210 011112210 012356778899999999999999999999999999 778888888
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
.++++++++.+.. +..+|++||.++. ..+++
T Consensus 501 ~i~~ll~~l~~~~-g~tvi~isHdl~~v~~~~d 532 (623)
T PRK10261 501 QIINLLLDLQRDF-GIAYLFISHDMAVVERISH 532 (623)
T ss_pred HHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 8999999986654 7899999999863 44443
No 300
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=6.2e-10 Score=117.61 Aligned_cols=149 Identities=23% Similarity=0.291 Sum_probs=96.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc-------cccCceEEEEcccc-hhhhccHHHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-------DRRRKMMIACTQPR-RVAAMSVSRRVAE 138 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-------~~~~~~~i~~t~p~-~~~~~~v~~~v~~ 138 (727)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+. .+...++.+++..
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~ 109 (280)
T PRK13649 30 IEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAF 109 (280)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHH
Confidence 5689999999999999999987432 222211110 01123556666652 2223466666642
Q ss_pred hc---ccc----------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHH
Q 004850 139 EM---DVT----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (727)
Q Consensus 139 ~~---~~~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (727)
.. +.. ....+|.. ....+..+..+|+|+++++.++++++.+++++|||| +++|......+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 184 (280)
T PRK13649 110 GPQNFGVSQEEAEALAREKLALVGIS-----ESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKEL 184 (280)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCC-----hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 11 100 00111211 011245667899999999999999999999999999 77788888888
Q ss_pred HHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
..+++++.+. +..+|++||.++ ...+++
T Consensus 185 ~~~l~~~~~~--~~tiiivsH~~~~~~~~~d 213 (280)
T PRK13649 185 MTLFKKLHQS--GMTIVLVTHLMDDVANYAD 213 (280)
T ss_pred HHHHHHHHHC--CCEEEEEeccHHHHHHhCC
Confidence 8998887543 679999999985 344444
No 301
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.97 E-value=5e-08 Score=114.98 Aligned_cols=105 Identities=16% Similarity=0.118 Sum_probs=67.4
Q ss_pred EEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhh-------cCCCCCCC------------CCCC
Q 004850 282 ILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKI-------FEPAPPPS------------KEGG 342 (727)
Q Consensus 282 iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~-------~~~~~~g~------------~~~~ 342 (727)
-||=+++.+.+-.++..|...... ....+.++.+||.-+...|..+ ++...+.. ....
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~---~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~ 835 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAE---EKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPA 835 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccc---cCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccc
Confidence 467777777777777777654321 1245789999999876665442 22211000 0000
Q ss_pred CCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCCCc
Q 004850 343 PPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPG 410 (727)
Q Consensus 343 ~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G 410 (727)
.....|+|||.|.|-|+||+==-.+.+ |.+..+.+||+||.-|.+.+
T Consensus 836 ~~~~~i~v~Tqv~E~g~D~dfd~~~~~---------------------~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 836 LNHLFIVLATPVEEVGRDHDYDWAIAD---------------------PSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred cCCCeEEEEeeeEEEEecccCCeeeec---------------------cCcHHHHHHHhhcccccccC
Confidence 114589999999999999863222233 88899999999999888543
No 302
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=8.9e-10 Score=126.23 Aligned_cols=149 Identities=18% Similarity=0.297 Sum_probs=101.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh--c-----------CccCCCcc----ccCceEEEEcccchhhhccHHHHHHHh
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL--E-----------GVDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll--~-----------~~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
.+..|+.++|+|+|||||||++..+.= . +.++.... ..+.+.++++++......++.+++...
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 106 (506)
T PRK13549 27 KVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLG 106 (506)
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhc
Confidence 357899999999999999999875421 1 11111000 123466777776555556777766432
Q ss_pred ccc----------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHH
Q 004850 140 MDV----------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (727)
Q Consensus 140 ~~~----------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (727)
... .+...+|.. ...+..+..+|+|+++|+.++++++.+++++|||| +++|.....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~ 180 (506)
T PRK13549 107 NEITPGGIMDYDAMYLRAQKLLAQLKLD------INPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETA 180 (506)
T ss_pred ccccccCCcCHHHHHHHHHHHHHHcCCC------CCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 110 001111110 12355677899999999999999999999999999 888888888
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
.+.++++++.+. +..+|+.||.++ ...+++
T Consensus 181 ~l~~~l~~l~~~--~~tvi~~tH~~~~~~~~~d 211 (506)
T PRK13549 181 VLLDIIRDLKAH--GIACIYISHKLNEVKAISD 211 (506)
T ss_pred HHHHHHHHHHHC--CCEEEEEeCcHHHHHHhcC
Confidence 899999998543 678999999985 344444
No 303
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.97 E-value=7.5e-09 Score=101.96 Aligned_cols=168 Identities=23% Similarity=0.205 Sum_probs=101.0
Q ss_pred hcCCCchHHHHHHHHhhhcC-CEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 62 RKSLPVWQQKEEFLQVLKAN-QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 62 ~~~lp~~~~q~~ii~~i~~g-~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
.+..++.+.|.++++.+..+ ..+++.|+||||||+.+..++++...... ...+++..|+...+.+..+.+....
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-----~~~~l~~~p~~~~~~~~~~~~~~~~ 78 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-----GKRVLVLVPTRELAEQWAEELKKLG 78 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-----CCcEEEEeCCHHHHHHHHHHHHHHh
Confidence 34567899999999999988 99999999999999988777766541111 1124444565555555555555443
Q ss_pred ccc---ccceeceeeee---ccccccCccccccChHHHHHHHhccc-cccCCeeEEeeccCcChhhHHHHHHHHHHHHHh
Q 004850 141 DVT---IGEEVGYSIRF---EDCSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLKN 213 (727)
Q Consensus 141 ~~~---~~~~vg~~~~~---~~~~~~~~~i~~lT~G~l~r~~~~~~-ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~ 213 (727)
... ....++..... .........+.+.|.+.+.+...... ...+++++|+||+|.-... .....+..+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~--~~~~~~~~~~~~ 156 (201)
T smart00487 79 PSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG--GFGDQLEKLLKL 156 (201)
T ss_pred ccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC--CcHHHHHHHHHh
Confidence 211 11111111000 00111122778899999988776654 4778899999999963320 112222222222
Q ss_pred -CCCCEEEEEcCccc--HHHHHhhhc
Q 004850 214 -RPDLKLVVMSATLE--AEKFQGYFY 236 (727)
Q Consensus 214 -~~~~~vil~SATl~--~~~~~~~f~ 236 (727)
.++.+++++|||.. .......+.
T Consensus 157 ~~~~~~~v~~saT~~~~~~~~~~~~~ 182 (201)
T smart00487 157 LPKNVQLLLLSATPPEEIENLLELFL 182 (201)
T ss_pred CCccceEEEEecCCchhHHHHHHHhc
Confidence 34789999999994 444443333
No 304
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.96 E-value=1.1e-09 Score=114.00 Aligned_cols=145 Identities=21% Similarity=0.297 Sum_probs=92.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCcc-----CCC--cc-----ccCceEEEEcccch--hhhcc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVD-----IET--PD-----RRRKMMIACTQPRR--VAAMS 131 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~-----~~~--~~-----~~~~~~i~~t~p~~--~~~~~ 131 (727)
.+.+|+.++|+|+|||||||++..+. +++.+ +.. .. ..+.+.++++.+.. ....+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 104 (253)
T TIGR02323 25 DLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVS 104 (253)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCcccc
Confidence 36789999999999999999987332 22211 110 00 01235566666531 11233
Q ss_pred HHHHHHHhc---c-----------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCc
Q 004850 132 VSRRVAEEM---D-----------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHE 195 (727)
Q Consensus 132 v~~~v~~~~---~-----------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--ahe 195 (727)
+.+++.... . ......+|.. ....+..+..+|+|+++++.++++++.+++++++|| +++
T Consensus 105 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-----~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~L 179 (253)
T TIGR02323 105 AGANIGERLMAIGARHYGNIRAAAHDWLEEVEID-----PTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGL 179 (253)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCC-----hhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccC
Confidence 333332110 0 0001111110 012345677899999999999999999999999999 788
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 196 RTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 196 r~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
|......++.+++++.+.. +..+|++||.++
T Consensus 180 D~~~~~~l~~~l~~~~~~~-~~tii~vsH~~~ 210 (253)
T TIGR02323 180 DVSVQARLLDLLRGLVRDL-GLAVIIVTHDLG 210 (253)
T ss_pred CHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 8888888889988876543 679999999885
No 305
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.96 E-value=1.4e-09 Score=101.98 Aligned_cols=146 Identities=23% Similarity=0.294 Sum_probs=101.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-------ccccCceEEEEcccchhhhccHHHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-------PDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-------~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (727)
.+..|+.+.|+||+||||||++.... +.+.++.+ .-+.+.+.++++.-..++.++..++++-
T Consensus 32 ~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~l 111 (228)
T COG4181 32 VVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVAL 111 (228)
T ss_pred EecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccc
Confidence 46789999999999999999876211 11111111 1123456788887777888888888753
Q ss_pred hc-------------cccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHH
Q 004850 139 EM-------------DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (727)
Q Consensus 139 ~~-------------~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (727)
.+ .......||...| ....+..+|+|..||+.+++++...|++++-|| -.+|....+.+
T Consensus 112 PleL~ge~~~~~~~~A~~lL~~vGLg~R------l~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~i 185 (228)
T COG4181 112 PLELRGESSADSRAGAKALLEAVGLGKR------LTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKI 185 (228)
T ss_pred hhhhcCCccccHHHHHHHHHHHhCcccc------cccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHH
Confidence 22 1122344554422 234566899999999999999999999999999 33444555568
Q ss_pred HHHHHHHHHhCCCCEEEEEcCcccHH
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLEAE 229 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~~~ 229 (727)
.+++-.+.+.+ +.++|+++|+....
T Consensus 186 aDLlF~lnre~-G~TlVlVTHD~~LA 210 (228)
T COG4181 186 ADLLFALNRER-GTTLVLVTHDPQLA 210 (228)
T ss_pred HHHHHHHhhhc-CceEEEEeCCHHHH
Confidence 88888877766 89999999986543
No 306
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.96 E-value=2.1e-09 Score=107.05 Aligned_cols=67 Identities=19% Similarity=0.263 Sum_probs=59.4
Q ss_pred CccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
+.....+|-|++++++++++++.+|.+||||| ..+|......++..+.++....+..++|++||-.+
T Consensus 166 ~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e 234 (257)
T COG1119 166 DRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE 234 (257)
T ss_pred cCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh
Confidence 45666899999999999999999999999999 66777888889999999988877889999999764
No 307
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.96 E-value=9.2e-10 Score=122.40 Aligned_cols=152 Identities=24% Similarity=0.340 Sum_probs=106.3
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHH-----------HhcCccC--CC---ccccCceEEEEcccchh--hhccHHHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDI--ET---PDRRRKMMIACTQPRRV--AAMSVSRRVAE 138 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~--~~---~~~~~~~~i~~t~p~~~--~~~~v~~~v~~ 138 (727)
.+.+|+.++|+|++||||||+...+ .+++.+. .. ....+.+.++++.|-.. +.+++.+.+++
T Consensus 313 ~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~e 392 (539)
T COG1123 313 DLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAE 392 (539)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHh
Confidence 4689999999999999999987632 2333221 10 01223566788877533 34666666655
Q ss_pred hcccc--------------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHH
Q 004850 139 EMDVT--------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (727)
Q Consensus 139 ~~~~~--------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (727)
.+... +.+.||.. ....+.++..+|+|++||+.+++++..+|++||+|| ..+|..-..-
T Consensus 393 pL~~~~~~~~~~~~~rv~~ll~~VgL~-----~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~ 467 (539)
T COG1123 393 PLRIHGGGSGAERRARVAELLELVGLP-----PEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQ 467 (539)
T ss_pred HHhhhcccchHHHHHHHHHHHHHcCCC-----HHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHH
Confidence 44321 12233332 112466788999999999999999999999999999 4566666777
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCcccH-HHHHhh
Q 004850 203 LFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (727)
Q Consensus 203 ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~~ 234 (727)
++++++++.++. ++..+++||++.. +.+++.
T Consensus 468 VlnLl~~lq~e~-g~t~lfISHDl~vV~~i~dr 499 (539)
T COG1123 468 VLNLLKDLQEEL-GLTYLFISHDLAVVRYIADR 499 (539)
T ss_pred HHHHHHHHHHHh-CCEEEEEeCCHHHHHhhCce
Confidence 899999988876 8999999999974 455543
No 308
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.96 E-value=7.4e-10 Score=116.53 Aligned_cols=71 Identities=20% Similarity=0.284 Sum_probs=58.8
Q ss_pred CccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
++.+..+|+|+.+++.++++++.+++++|+|| +++|......+.++++++.+. +..+|++||.++ ...+++
T Consensus 137 ~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~--g~tviivsH~~~~~~~~~d 210 (272)
T PRK15056 137 HRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE--GKTMLVSTHNLGSVTEFCD 210 (272)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCC
Confidence 45667899999999999999999999999999 777778888888999887543 678999999985 344443
No 309
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.96 E-value=1.1e-09 Score=113.16 Aligned_cols=150 Identities=15% Similarity=0.208 Sum_probs=93.5
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhc-------------CccCCC--c-c-ccCceEEEEcccchhhhccHHHHHHHh
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLE-------------GVDIET--P-D-RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~-------------~~~~~~--~-~-~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
.+..|+.++|+|+|||||||++..+.=. +.++.. . . ....+.++++.+......++.+.+...
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~ 101 (243)
T TIGR01978 22 TVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSA 101 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHH
Confidence 3578999999999999999998754311 000000 0 0 011244566666555555565554321
Q ss_pred ccccc-------------cceeceeeeecccc--ccCcccc-ccChHHHHHHHhccccccCCeeEEeec--cCcChhhHH
Q 004850 140 MDVTI-------------GEEVGYSIRFEDCS--SARTVLK-YLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (727)
Q Consensus 140 ~~~~~-------------~~~vg~~~~~~~~~--~~~~~i~-~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (727)
..... ...+......-+.. ..+..+. .+|+|+++++.++++++.+++++|+|| +++|.....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 181 (243)
T TIGR01978 102 LNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALK 181 (243)
T ss_pred HHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 10000 00000000000111 1233444 499999999999999999999999999 788888888
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
.+..+++++.+. +..+|++||.++.
T Consensus 182 ~l~~~l~~~~~~--~~tvi~vsH~~~~ 206 (243)
T TIGR01978 182 IVAEGINRLREP--DRSFLIITHYQRL 206 (243)
T ss_pred HHHHHHHHHHHC--CcEEEEEEecHHH
Confidence 899999887542 6789999998853
No 310
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.95 E-value=3.8e-09 Score=103.31 Aligned_cols=117 Identities=21% Similarity=0.249 Sum_probs=81.1
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeecc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED 156 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~ 156 (727)
.+.+|+.++|+|+|||||||++..+. +. ... . .+- |.... ..++|....
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~--Gl-~~p-~--~G~-i~~~g----------------------~~i~~~~q~-- 69 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILA--GQ-LIP-N--GDN-DEWDG----------------------ITPVYKPQY-- 69 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHH--cC-CCC-C--CcE-EEECC----------------------EEEEEEccc--
Confidence 66899999999999999999998543 32 111 1 121 11110 012322100
Q ss_pred ccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 157 CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 157 ~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
..+|.|+.+++.++++++.+++++++|| ++.+......+.+.+.++.++ .+..+|+.||.++. ..+++
T Consensus 70 --------~~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~~~~~~d 140 (177)
T cd03222 70 --------IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEE-GKKTALVVEHDLAVLDYLSD 140 (177)
T ss_pred --------CCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHhCC
Confidence 0199999999999999999999999999 677777777788888887554 24789999999853 33443
No 311
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.95 E-value=1.1e-09 Score=108.27 Aligned_cols=157 Identities=17% Similarity=0.227 Sum_probs=103.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhH-----------HHhcCccCCCc----cccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIETP----DRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
.+..|++++++|+||+||||++.. +.+++.++... ....++..+|.-.+.++.++|.+++.-...
T Consensus 25 ~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~ 104 (237)
T COG0410 25 EVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAY 104 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhh
Confidence 357899999999999999999874 34455554431 123466667766677788999998853211
Q ss_pred ccccceeceee-------eeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHH
Q 004850 142 VTIGEEVGYSI-------RFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (727)
Q Consensus 142 ~~~~~~vg~~~-------~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~ 211 (727)
..-. .-+... .|-.. ...+..--.+|+|+.|.+.++++++.+|++++||| ..+-+.-...++..++++.
T Consensus 105 ~~~~-~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~ 183 (237)
T COG0410 105 ARRD-KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183 (237)
T ss_pred cccc-cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHH
Confidence 0000 000000 00000 11234445799999999999999999999999999 5555666677888888876
Q ss_pred HhCCCCEEEEEcCcccH-HHHHhhh
Q 004850 212 KNRPDLKLVVMSATLEA-EKFQGYF 235 (727)
Q Consensus 212 ~~~~~~~vil~SATl~~-~~~~~~f 235 (727)
+.. +..|+++-...+. -.+++++
T Consensus 184 ~~~-g~tIlLVEQn~~~Al~iaDr~ 207 (237)
T COG0410 184 KEG-GMTILLVEQNARFALEIADRG 207 (237)
T ss_pred HcC-CcEEEEEeccHHHHHHhhCEE
Confidence 553 5789998877753 4456554
No 312
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.95 E-value=4.5e-10 Score=114.31 Aligned_cols=148 Identities=20% Similarity=0.250 Sum_probs=92.3
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhc-----------CccCCC--c-cccCceEEEEcccchhhhccHHHHHHHhccc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLE-----------GVDIET--P-DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~-----------~~~~~~--~-~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (727)
.+.+|+.++|+|+|||||||++..+.-. +.++.. . ...+.+.++++.+.... .++.+.+......
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~ 104 (220)
T cd03245 26 TIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL 104 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCC
Confidence 3579999999999999999998754311 111100 0 01123455666554333 4666665321100
Q ss_pred -------cccceeceeeeeccc-----cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 143 -------TIGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 143 -------~~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
.....+|.....+.. ......+..+|+|+++|+.++++++.+++++|+|| +++|......+.++++
T Consensus 105 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 184 (220)
T cd03245 105 ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR 184 (220)
T ss_pred CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 001111111000000 00112345899999999999999999999999999 7888888888888888
Q ss_pred HHHHhCCCCEEEEEcCcccH
Q 004850 209 EVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~~ 228 (727)
++.+ +..+|+.||.++.
T Consensus 185 ~~~~---~~tii~~sH~~~~ 201 (220)
T cd03245 185 QLLG---DKTLIIITHRPSL 201 (220)
T ss_pred HhcC---CCEEEEEeCCHHH
Confidence 8643 3689999999864
No 313
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.94 E-value=6.5e-08 Score=110.42 Aligned_cols=144 Identities=15% Similarity=0.258 Sum_probs=94.7
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccC
Q 004850 279 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETS 358 (727)
Q Consensus 279 ~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~g 358 (727)
.|+.|||+.+...++.+.+.|.+...+. .+--+..+-|+-.+.++ .+..|...+ ...+|.++.|...||
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~----~~~~a~~IT~d~~~~q~--~Id~f~~ke-----~~P~IaitvdlL~TG 494 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEY----NGRYAMKITGDAEQAQA--LIDNFIDKE-----KYPRIAITVDLLTTG 494 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccc----cCceEEEEeccchhhHH--HHHHHHhcC-----CCCceEEehhhhhcC
Confidence 5789999999999999999998864331 22335555555443332 122232210 145899999999999
Q ss_pred cccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCCC--c------eEEEecc---hhhhcccCCC
Q 004850 359 LTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP--G------KCFRLYT---EKSFNNDLQP 427 (727)
Q Consensus 359 itIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~--G------~~~~L~t---~~~~~~~l~~ 427 (727)
||+|.|..+|=.-. =-|+.-+.|.+||.=|..+ | .-|.++. --+|-. |.+
T Consensus 495 iDvpev~nlVF~r~------------------VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~~~~~~~-~~~ 555 (875)
T COG4096 495 VDVPEVVNLVFDRK------------------VRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVDNTEYFE-MDP 555 (875)
T ss_pred CCchheeeeeehhh------------------hhhHHHHHHHhcCccccCccccCccccceeEEEEEhhhhhhhhc-cCc
Confidence 99999987774333 3588899999999999843 3 2344433 233433 666
Q ss_pred CCCCcccccCchhhHHHHHHcCCCC
Q 004850 428 QTYPEILRSNLANTVLTLKKLGIDD 452 (727)
Q Consensus 428 ~~~pei~r~~l~~~~L~lk~~~~~~ 452 (727)
...+.-.+..++.-++...-.+..+
T Consensus 556 ~~~e~~~~~~l~~rLF~~~~~~~~~ 580 (875)
T COG4096 556 EMREGRVRVSLEQRLFADRLFDLEP 580 (875)
T ss_pred ccccccccchHHHHHhhhhhccCch
Confidence 6777777777776666555444433
No 314
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.94 E-value=9.7e-10 Score=118.44 Aligned_cols=141 Identities=23% Similarity=0.284 Sum_probs=95.8
Q ss_pred EEcCCCChhhchhhHHH-----------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhccc-----------
Q 004850 86 LVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV----------- 142 (727)
Q Consensus 86 i~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~----------- 142 (727)
|+|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++......
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 47999999999987543 22222211 11123566778777666667888887542210
Q ss_pred --cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCE
Q 004850 143 --TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLK 218 (727)
Q Consensus 143 --~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~ 218 (727)
.....+|.. ...+..+..+|+|+++|+.++++++.++++++||| +++|......+...++++.+.. +..
T Consensus 81 ~~~~l~~~~l~------~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~-g~t 153 (325)
T TIGR01187 81 VLEALRLVQLE------EFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL-GIT 153 (325)
T ss_pred HHHHHHHcCCc------chhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-CCE
Confidence 011111211 12355677899999999999999999999999999 6777777788888888876653 689
Q ss_pred EEEEcCcccH-HHHHh
Q 004850 219 LVVMSATLEA-EKFQG 233 (727)
Q Consensus 219 vil~SATl~~-~~~~~ 233 (727)
+|++||.++. ..+++
T Consensus 154 iiivTHd~~e~~~~~d 169 (325)
T TIGR01187 154 FVFVTHDQEEAMTMSD 169 (325)
T ss_pred EEEEeCCHHHHHHhCC
Confidence 9999999853 44443
No 315
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.94 E-value=2.7e-09 Score=105.09 Aligned_cols=141 Identities=18% Similarity=0.325 Sum_probs=86.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccc-hhhhccHHHHHHHhccccccceeceeeeecc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPR-RVAAMSVSRRVAEEMDVTIGEEVGYSIRFED 156 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~ 156 (727)
+.+|+.++|+|+|||||||++..+. +. ... . .+-+.+--++. ..........++.-.. ....+|..
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~--G~-~~~-~--~G~v~~~g~~~~~~~~~~~~~~i~~~~q--~l~~~gl~----- 88 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLA--GL-LKP-S--SGEILLDGKDLASLSPKELARKIAYVPQ--ALELLGLA----- 88 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh--CC-CCC-C--CcEEEECCEECCcCCHHHHHHHHhHHHH--HHHHcCCH-----
Confidence 5689999999999999999987643 32 111 1 12111111110 0000011111110000 12222221
Q ss_pred ccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 157 CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 157 ~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
...+..+..+|+|+.+++.++++++.+++++|+|| ++.|....+.+..+++++.++. +..+|++||..+. ..+++
T Consensus 89 -~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~-~~tiii~sh~~~~~~~~~d 166 (180)
T cd03214 89 -HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARER-GKTVVMVLHDLNLAARYAD 166 (180)
T ss_pred -hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 11234566799999999999999999999999999 6777777888888888875542 5789999999863 34443
No 316
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.94 E-value=1.4e-09 Score=124.42 Aligned_cols=143 Identities=23% Similarity=0.302 Sum_probs=98.4
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc----cccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP----DRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
.+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++.....
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 105 (501)
T PRK11288 26 DCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQL 105 (501)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhccc
Confidence 45789999999999999999987532 111111100 012346677776655555677777653210
Q ss_pred c----------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHH
Q 004850 142 V----------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (727)
Q Consensus 142 ~----------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (727)
. .....+|.. ...+..+..+|+|+++|+.++++++.+++++|+|| +++|......+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 179 (501)
T PRK11288 106 PHKGGIVNRRLLNYEAREQLEHLGVD------IDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQL 179 (501)
T ss_pred ccccCCCCHHHHHHHHHHHHHHcCCC------CCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHH
Confidence 0 001111110 11245667899999999999999999999999999 78888888889
Q ss_pred HHHHHHHHHhCCCCEEEEEcCccc
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~ 227 (727)
.++++++.+. +..+|++||.++
T Consensus 180 ~~~l~~~~~~--g~tiiiitHd~~ 201 (501)
T PRK11288 180 FRVIRELRAE--GRVILYVSHRME 201 (501)
T ss_pred HHHHHHHHhC--CCEEEEEeCCHH
Confidence 9999887543 789999999985
No 317
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.94 E-value=1.8e-09 Score=112.77 Aligned_cols=151 Identities=21% Similarity=0.291 Sum_probs=95.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCcc-----CCC--cc-----ccCceEEEEcccch--hhhccH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVD-----IET--PD-----RRRKMMIACTQPRR--VAAMSV 132 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~-----~~~--~~-----~~~~~~i~~t~p~~--~~~~~v 132 (727)
+..|+.++|+|+|||||||++..+. +++.+ +.. .. ....+.++++++.. ....++
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~ 108 (258)
T PRK11701 29 LYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSA 108 (258)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccH
Confidence 6799999999999999999987432 12211 111 00 01235667776631 122333
Q ss_pred HHHHHHhc---c-----------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcC
Q 004850 133 SRRVAEEM---D-----------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHER 196 (727)
Q Consensus 133 ~~~v~~~~---~-----------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher 196 (727)
.+++.... + ......+|.. ....+..+..+|+|+++++.++++++.+++++|+|| +++|
T Consensus 109 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD 183 (258)
T PRK11701 109 GGNIGERLMAVGARHYGDIRATAGDWLERVEID-----AARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183 (258)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCC-----hhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 33332211 0 0001111110 011245677899999999999999999999999999 7777
Q ss_pred hhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHhh
Q 004850 197 TLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (727)
Q Consensus 197 ~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~~ 234 (727)
......+...++++.+.. +..+|+.||.++. ..+++.
T Consensus 184 ~~~~~~l~~~l~~~~~~~-~~tii~isH~~~~~~~~~d~ 221 (258)
T PRK11701 184 VSVQARLLDLLRGLVREL-GLAVVIVTHDLAVARLLAHR 221 (258)
T ss_pred HHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhcCE
Confidence 777778888888876543 6789999999864 345543
No 318
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.93 E-value=1.5e-09 Score=119.88 Aligned_cols=150 Identities=19% Similarity=0.296 Sum_probs=109.3
Q ss_pred hhhcCCEEEEEcCCCChhhchhhH-----------HHhcCccCC--Cc--cccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIE--TP--DRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~--~~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
.+..|++++++|+||+||||++.. +++++.... ++ ....++.++.+.....+.++|++++.-..-
T Consensus 30 ~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre 109 (500)
T COG1129 30 TVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGRE 109 (500)
T ss_pred EEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccc
Confidence 468999999999999999999873 333433221 11 123466677777777889999999842211
Q ss_pred cc-----------------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHH
Q 004850 142 VT-----------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (727)
Q Consensus 142 ~~-----------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (727)
.. +...+|.. ...++.+..+|.|+.|.+.+++++..+.++||||| +.+..-+++.
T Consensus 110 ~~~~~g~id~~~m~~~A~~~l~~lg~~------~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~ 183 (500)
T COG1129 110 PTRRFGLIDRKAMRRRARELLARLGLD------IDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETER 183 (500)
T ss_pred cccCCCccCHHHHHHHHHHHHHHcCCC------CChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 10 11111211 12567777899999999999999999999999999 6666778888
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCccc-HHHHHhh
Q 004850 203 LFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 203 ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~~ 234 (727)
++.+++++..+ +..+|++||-++ +-.+++.
T Consensus 184 Lf~~ir~Lk~~--Gv~ii~ISHrl~Ei~~i~Dr 214 (500)
T COG1129 184 LFDLIRRLKAQ--GVAIIYISHRLDEVFEIADR 214 (500)
T ss_pred HHHHHHHHHhC--CCEEEEEcCcHHHHHHhcCE
Confidence 99999998765 899999999985 4555554
No 319
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.93 E-value=3.1e-09 Score=108.67 Aligned_cols=147 Identities=20% Similarity=0.293 Sum_probs=93.0
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcC----------------ccCCCc-----cccCceEEEEcccchhhhccHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEG----------------VDIETP-----DRRRKMMIACTQPRRVAAMSVSRR 135 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~----------------~~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~ 135 (727)
.+..|+.++|+|+|||||||++..+.=.. .++... ...+.+.++++.+... ..++.++
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~ 100 (227)
T cd03260 22 DIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDN 100 (227)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHH
Confidence 35689999999999999999987532110 000000 0112355667666544 5677776
Q ss_pred HHHhcccc-------ccceeceeeeecccc-ccCcc--ccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHH
Q 004850 136 VAEEMDVT-------IGEEVGYSIRFEDCS-SARTV--LKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (727)
Q Consensus 136 v~~~~~~~-------~~~~vg~~~~~~~~~-~~~~~--i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (727)
+....... ....+.......+.. ..... +..+|+|+++++.++++++.+++++|+|| +++|......+
T Consensus 101 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 180 (227)
T cd03260 101 VAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI 180 (227)
T ss_pred HHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 64321100 000000000000111 11233 47899999999999999999999999999 67777778888
Q ss_pred HHHHHHHHHhCCCCEEEEEcCccc
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~ 227 (727)
..+++++.+. ..+|++||.++
T Consensus 181 ~~~l~~~~~~---~tii~~sH~~~ 201 (227)
T cd03260 181 EELIAELKKE---YTIVIVTHNMQ 201 (227)
T ss_pred HHHHHHHhhC---cEEEEEeccHH
Confidence 8888887543 68999999885
No 320
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.93 E-value=1.9e-09 Score=113.18 Aligned_cols=151 Identities=21% Similarity=0.285 Sum_probs=95.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc------cccCceEEEEcccc-hh-hhccHHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPR-RV-AAMSVSRRVA 137 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~-~~-~~~~v~~~v~ 137 (727)
.+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+. .+ ...++.+.+.
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~ 113 (268)
T PRK10419 34 SLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIR 113 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHH
Confidence 35789999999999999999987432 111111100 01224556666652 12 2244444432
Q ss_pred Hhc----c----------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHH
Q 004850 138 EEM----D----------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (727)
Q Consensus 138 ~~~----~----------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (727)
... + ......+|+.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|.....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~ 188 (268)
T PRK10419 114 EPLRHLLSLDKAERLARASEMLRAVDLDD-----SVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQA 188 (268)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHcCCCh-----hHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHH
Confidence 110 0 01111122210 11245667899999999999999999999999999 777777777
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
.+.++++++.+.. +..+|++||..+. ..+++
T Consensus 189 ~~~~~l~~~~~~~-~~tiiivsH~~~~i~~~~d 220 (268)
T PRK10419 189 GVIRLLKKLQQQF-GTACLFITHDLRLVERFCQ 220 (268)
T ss_pred HHHHHHHHHHHHc-CcEEEEEECCHHHHHHhCC
Confidence 8888888876543 6799999999853 34444
No 321
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=1.1e-09 Score=112.02 Aligned_cols=148 Identities=18% Similarity=0.260 Sum_probs=92.4
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh-----------cCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhccc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (727)
.+..|+.++|+|+|||||||++..+.= ++.++.. ....+.+.++++.+.... .++.+++......
T Consensus 25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~~~~~~~~ 103 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFS-GTIMENIRLGRPN 103 (229)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhh-hHHHHHHhccCCC
Confidence 357899999999999999999875431 1111100 001223556666554333 3666655422110
Q ss_pred c----c---cceeceeeeecc----c-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 143 T----I---GEEVGYSIRFED----C-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 143 ~----~---~~~vg~~~~~~~----~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
. + ...++.....+. . ...+..+..+|+|+++++.++++++.+++++|+|| +++|......+..+++
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 183 (229)
T cd03254 104 ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALE 183 (229)
T ss_pred CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 0 0 001111000000 0 01234467899999999999999999999999999 6777777888888888
Q ss_pred HHHHhCCCCEEEEEcCcccH
Q 004850 209 EVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~~ 228 (727)
.+. . +..+|++||..+.
T Consensus 184 ~~~-~--~~tii~~sh~~~~ 200 (229)
T cd03254 184 KLM-K--GRTSIIIAHRLST 200 (229)
T ss_pred Hhc-C--CCEEEEEecCHHH
Confidence 763 2 6789999998853
No 322
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.93 E-value=8.7e-10 Score=112.04 Aligned_cols=136 Identities=23% Similarity=0.227 Sum_probs=88.2
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeecc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED 156 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~ 156 (727)
.|.+|+.++++|++||||||+-..++--.. ... +- |.+.-. .+..++..++ .+.-......||..
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~-pt~-----G~-i~f~g~-~i~~~~~~~~--~~~v~elL~~Vgl~----- 99 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEE-PTS-----GE-ILFEGK-DITKLSKEER--RERVLELLEKVGLP----- 99 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcC-CCC-----ce-EEEcCc-chhhcchhHH--HHHHHHHHHHhCCC-----
Confidence 468999999999999999998775442111 111 21 222110 0111111110 11112223445522
Q ss_pred ccccCccccccChHHHHHHHhccccccCCeeEEeeccC--cChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 157 CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAH--ERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 157 ~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEah--er~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
.....+....+|+|++||+.++++++.+|+++|.||.- +|..-...++.+++++.... ++..+++||++.+
T Consensus 100 ~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~-~lt~lFIsHDL~v 172 (268)
T COG4608 100 EEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL-GLTYLFISHDLSV 172 (268)
T ss_pred HHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHh-CCeEEEEEEEHHh
Confidence 12245678899999999999999999999999999932 23334466899999988776 8999999999974
No 323
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.93 E-value=3.4e-09 Score=110.11 Aligned_cols=147 Identities=22% Similarity=0.251 Sum_probs=97.2
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhc----------C------ccCCC---ccccCceEEEEcccchhhhccHHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET---PDRRRKMMIACTQPRRVAAMSVSRRVA 137 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (727)
.+.+|+.++|+|+|||||||++..+.=. | .++.. ......+.++++.+......++.+++.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~ 104 (250)
T PRK14247 25 EIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVA 104 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHH
Confidence 3578999999999999999998754311 1 00100 011234566777765555677777774
Q ss_pred Hhccc---------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 138 EEMDV---------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 138 ~~~~~---------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
..... .....+|..... ....+..+..+|+|+++|+.++++++.+++++|+|| +++|....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~ 182 (250)
T PRK14247 105 LGLKLNRLVKSKKELQERVRWALEKAQLWDEV--KDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENT 182 (250)
T ss_pred HHHHhccccCCHHHHHHHHHHHHHHcCCCcch--hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 32110 001111211000 011345667899999999999999999999999999 77777888
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
..+..+++++. . +..+|++||.++.
T Consensus 183 ~~l~~~l~~~~-~--~~tiii~sH~~~~ 207 (250)
T PRK14247 183 AKIESLFLELK-K--DMTIVLVTHFPQQ 207 (250)
T ss_pred HHHHHHHHHHh-c--CCEEEEEeCCHHH
Confidence 88888888873 2 5789999999863
No 324
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.93 E-value=4.8e-10 Score=112.86 Aligned_cols=155 Identities=18% Similarity=0.237 Sum_probs=108.6
Q ss_pred cCCEEEEEcCCCChhhchhhHHH-----------hcCccCC-------CccccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 80 ANQVIILVGETGSGKTTQIPQFV-----------LEGVDIE-------TPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~-------~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
...++++-|++||||||++..+- +++.-+. -+...+.++++++.-+.++-++|..++...+.
T Consensus 23 ~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~ 102 (352)
T COG4148 23 ARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMW 102 (352)
T ss_pred CCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhc
Confidence 34789999999999999988432 2221111 12345677888998898999999888865442
Q ss_pred ccccceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCE
Q 004850 142 VTIGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLK 218 (727)
Q Consensus 142 ~~~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~ 218 (727)
..........+..-+. ...+..+..+|+|..||+.++++++..|+++++|| +-+|..-...++..+.++.... ++-
T Consensus 103 ~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~-~IP 181 (352)
T COG4148 103 KSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-NIP 181 (352)
T ss_pred ccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhc-CCC
Confidence 2211111110000011 12356777899999999999999999999999999 6666666778899999987765 889
Q ss_pred EEEEcCccc-HHHHHhhh
Q 004850 219 LVVMSATLE-AEKFQGYF 235 (727)
Q Consensus 219 vil~SATl~-~~~~~~~f 235 (727)
|+.+||.++ +..++++.
T Consensus 182 IlYVSHS~~Ev~RLAd~v 199 (352)
T COG4148 182 ILYVSHSLDEVLRLADRV 199 (352)
T ss_pred EEEEecCHHHHHhhhheE
Confidence 999999995 56777653
No 325
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.92 E-value=1.6e-09 Score=110.57 Aligned_cols=155 Identities=20% Similarity=0.274 Sum_probs=98.0
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hc--Cc--cCCC--cc-----ccCceEEEEcccchhhhccHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LE--GV--DIET--PD-----RRRKMMIACTQPRRVAAMSVSR 134 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~--~~--~~~~--~~-----~~~~~~i~~t~p~~~~~~~v~~ 134 (727)
.+..|+.++|+|+|||||||++..+. ++ +. ++.. .. ..+.+.++++.+......++.+
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 109 (224)
T TIGR02324 30 TVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALE 109 (224)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHH
Confidence 35799999999999999999987432 11 00 1100 00 0124567777776555566666
Q ss_pred HHHHhc---ccc---ccceeceeeeecccc--ccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHH
Q 004850 135 RVAEEM---DVT---IGEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (727)
Q Consensus 135 ~v~~~~---~~~---~~~~vg~~~~~~~~~--~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (727)
.+.... +.. ....+......-+.. ..+..+..+|+|+.+++.++++++.+++++|+|| ++.|......+.
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~ 189 (224)
T TIGR02324 110 VVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVV 189 (224)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 653211 100 000000000000111 1134567899999999999999999999999999 777777788888
Q ss_pred HHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+.++++... +..+|++||..+. ..+++
T Consensus 190 ~~l~~~~~~--g~tii~vsH~~~~~~~~~d 217 (224)
T TIGR02324 190 ELIAEAKAR--GAALIGIFHDEEVRELVAD 217 (224)
T ss_pred HHHHHHHhc--CCEEEEEeCCHHHHHHhcc
Confidence 888887543 6789999999753 34444
No 326
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.92 E-value=1.8e-09 Score=126.46 Aligned_cols=154 Identities=18% Similarity=0.271 Sum_probs=103.2
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccC----------CC-c-----c-ccCceEEEEcccc--h
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDI----------ET-P-----D-RRRKMMIACTQPR--R 126 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~----------~~-~-----~-~~~~~~i~~t~p~--~ 126 (727)
.+..|+.++|+|+|||||||++..+. +++..+ .. . . ....+.++++.|. .
T Consensus 38 ~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l 117 (623)
T PRK10261 38 SLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSL 117 (623)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhc
Confidence 35789999999999999999987543 111100 00 0 0 0124667777762 3
Q ss_pred hhhccHHHHHHHhc----cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec
Q 004850 127 VAAMSVSRRVAEEM----DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE 192 (727)
Q Consensus 127 ~~~~~v~~~v~~~~----~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE 192 (727)
....++.+++.... +. .+...+|... .....+..+..+|+|+++|+.++++++.++++||+||
T Consensus 118 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDE 194 (623)
T PRK10261 118 NPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPE---AQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADE 194 (623)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC---hhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 34567777775321 10 1112222210 0011355677899999999999999999999999999
Q ss_pred --cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHhh
Q 004850 193 --AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 193 --aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~~ 234 (727)
+++|......++.+++++.+.. +..+|++||.++ +..+++.
T Consensus 195 Pt~~LD~~~~~~l~~ll~~l~~~~-g~tvi~itHdl~~~~~~adr 238 (623)
T PRK10261 195 PTTALDVTIQAQILQLIKVLQKEM-SMGVIFITHDMGVVAEIADR 238 (623)
T ss_pred CCCccCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCE
Confidence 7888888888999999986544 678999999985 3455543
No 327
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.92 E-value=1.1e-09 Score=110.23 Aligned_cols=141 Identities=24% Similarity=0.322 Sum_probs=92.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhccc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (727)
.+.+|+.++|.|++||||||++..+. +++.++.. ....+.+.++++.|.... .++.+++......
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~~~ 108 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFDEY 108 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccCCC
Confidence 35689999999999999999988543 11111100 001234566677664443 4777666321100
Q ss_pred cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEE
Q 004850 143 TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLV 220 (727)
Q Consensus 143 ~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vi 220 (727)
.. ..+- .....+..+..+|+|+++|+.++++++.+++++|+|| ++++....+.+..+++++. .+..+|
T Consensus 109 ~~-~~~~------~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tii 178 (207)
T cd03369 109 SD-EEIY------GALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF---TNSTIL 178 (207)
T ss_pred CH-HHHH------HHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc---CCCEEE
Confidence 00 0000 0001245667899999999999999999999999999 6677777777888888762 268999
Q ss_pred EEcCcccH
Q 004850 221 VMSATLEA 228 (727)
Q Consensus 221 l~SATl~~ 228 (727)
++||..+.
T Consensus 179 i~th~~~~ 186 (207)
T cd03369 179 TIAHRLRT 186 (207)
T ss_pred EEeCCHHH
Confidence 99998864
No 328
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.92 E-value=8.2e-10 Score=113.74 Aligned_cols=147 Identities=16% Similarity=0.251 Sum_probs=92.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc-c
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-V 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-~ 142 (727)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+... ..++.+++..... .
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~~nl~~~~~~~ 103 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLF-NRSIRDNIALADPGM 103 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhc-cchHHHHhhccCCCC
Confidence 5789999999999999999987543 11111110 00122355566655433 3566666643211 0
Q ss_pred c---c---cceeceeeeeccc-----cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 143 T---I---GEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 143 ~---~---~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
. + ....+.....+.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|......+..++++
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 183 (237)
T cd03252 104 SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHD 183 (237)
T ss_pred CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 0 0 0001110000000 01234567899999999999999999999999999 77777778888888887
Q ss_pred HHHhCCCCEEEEEcCcccH
Q 004850 210 VLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~ 228 (727)
+. . +..+|++||.++.
T Consensus 184 ~~--~-~~tiii~sH~~~~ 199 (237)
T cd03252 184 IC--A-GRTVIIIAHRLST 199 (237)
T ss_pred hc--C-CCEEEEEeCCHHH
Confidence 63 2 6789999999864
No 329
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.92 E-value=1.5e-09 Score=124.18 Aligned_cols=155 Identities=21% Similarity=0.291 Sum_probs=99.2
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc---c-ccCceEEEEcccc---hhhhccHHHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---D-RRRKMMIACTQPR---RVAAMSVSRRVAE 138 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~-~~~~~~i~~t~p~---~~~~~~v~~~v~~ 138 (727)
.+..|+.++|+|+|||||||++..+. +++.++... . ....+.++++.+. .....++.+++..
T Consensus 275 ~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~ 354 (501)
T PRK11288 275 SVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINI 354 (501)
T ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhcc
Confidence 46899999999999999999988543 111111100 0 0123445555542 3344566666542
Q ss_pred hccccc---c---------ceeceeeeeccc--cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHH
Q 004850 139 EMDVTI---G---------EEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (727)
Q Consensus 139 ~~~~~~---~---------~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (727)
...... + ..+......-+. ...++.+..+|+|+++|+.++++++.++++||||| +++|......
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~ 434 (501)
T PRK11288 355 SARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHE 434 (501)
T ss_pred ccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHH
Confidence 110000 0 000000000011 12356778999999999999999999999999999 7888888888
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 203 LFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 203 ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
++.++.++.+. +..+|++||.++ ...+++
T Consensus 435 l~~~l~~l~~~--g~tviivsHd~~~~~~~~d 464 (501)
T PRK11288 435 IYNVIYELAAQ--GVAVLFVSSDLPEVLGVAD 464 (501)
T ss_pred HHHHHHHHHhC--CCEEEEECCCHHHHHhhCC
Confidence 99999888654 778999999985 344443
No 330
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.92 E-value=1.6e-09 Score=110.68 Aligned_cols=148 Identities=20% Similarity=0.268 Sum_probs=93.2
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhccc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (727)
.+.+|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++++... ..++.+++......
T Consensus 36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~-~~tv~~nl~~~~~~ 114 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLF-ARSLQDNIAYGLQS 114 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHH-hhhHHHHhccccCC
Confidence 35799999999999999999987433 11111100 00122455666665433 34666655321100
Q ss_pred -cc---c---ceecee---eeec-cc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 143 -TI---G---EEVGYS---IRFE-DC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 143 -~~---~---~~vg~~---~~~~-~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
.. . ...+.. ..+. +. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|....+.+..+++
T Consensus 115 ~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 194 (226)
T cd03248 115 CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALY 194 (226)
T ss_pred CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 00 0 000000 0000 01 11245567899999999999999999999999999 7777788888888888
Q ss_pred HHHHhCCCCEEEEEcCcccH
Q 004850 209 EVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~~ 228 (727)
++.+ +.++|++||.++.
T Consensus 195 ~~~~---~~tii~~sh~~~~ 211 (226)
T cd03248 195 DWPE---RRTVLVIAHRLST 211 (226)
T ss_pred HHcC---CCEEEEEECCHHH
Confidence 8642 4789999999854
No 331
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.91 E-value=1.9e-09 Score=123.43 Aligned_cols=150 Identities=18% Similarity=0.278 Sum_probs=100.4
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc----ccCceEEEEcccc---hhhhccHHHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD----RRRKMMIACTQPR---RVAAMSVSRRVAE 138 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~----~~~~~~i~~t~p~---~~~~~~v~~~v~~ 138 (727)
.+..|+.++|+|+|||||||++..+. +++.++.... ..+.+.++++++. .....++.+++..
T Consensus 274 ~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~ 353 (501)
T PRK10762 274 TLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSL 353 (501)
T ss_pred EEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhh
Confidence 46799999999999999999987543 1221111100 1124566777652 3344566666542
Q ss_pred hcc--c-----------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcCh
Q 004850 139 EMD--V-----------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERT 197 (727)
Q Consensus 139 ~~~--~-----------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~ 197 (727)
... . .+...+|.. ....+..+..+|+|+++|+.++++++.+++++|||| +++|.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~ 428 (501)
T PRK10762 354 TALRYFSRAGGSLKHADEQQAVSDFIRLFNIK-----TPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDV 428 (501)
T ss_pred hhhhhhcccccccCHHHHHHHHHHHHHhcCCC-----CCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCH
Confidence 110 0 000111110 012356677899999999999999999999999999 78888
Q ss_pred hhHHHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 198 LATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 198 ~~~d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
.....+.++++++... +..+|++||.++ +..+++
T Consensus 429 ~~~~~l~~~l~~~~~~--g~tviivtHd~~~~~~~~d 463 (501)
T PRK10762 429 GAKKEIYQLINQFKAE--GLSIILVSSEMPEVLGMSD 463 (501)
T ss_pred hHHHHHHHHHHHHHHC--CCEEEEEcCCHHHHHhhCC
Confidence 8888999999998653 788999999985 344443
No 332
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.91 E-value=2e-09 Score=123.54 Aligned_cols=155 Identities=15% Similarity=0.204 Sum_probs=99.0
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc----ccCceEEEEccc---chhhhccHHHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD----RRRKMMIACTQP---RRVAAMSVSRRVAE 138 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~----~~~~~~i~~t~p---~~~~~~~v~~~v~~ 138 (727)
.+..|+.++|+|+|||||||++..+. +++.++.... ..+.+.++++.+ ......++.+++..
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~ 364 (510)
T PRK09700 285 SVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAI 364 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcc
Confidence 36789999999999999999988543 1121111100 012455666553 23334566666542
Q ss_pred hcccc---c----c--------ceeceeeeeccc--cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhh
Q 004850 139 EMDVT---I----G--------EEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (727)
Q Consensus 139 ~~~~~---~----~--------~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~ 199 (727)
..... . + ..+......-+. ...+..+..+|+|+++|+.++++++.+++++|+|| +++|...
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~ 444 (510)
T PRK09700 365 SRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA 444 (510)
T ss_pred ccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHH
Confidence 11000 0 0 000000000011 12356677899999999999999999999999999 7888888
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 200 TDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 200 ~d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
...++.+++++.+. +..+|++||.++ ...+++
T Consensus 445 ~~~l~~~l~~l~~~--g~tvi~vsHd~~~~~~~~d 477 (510)
T PRK09700 445 KAEIYKVMRQLADD--GKVILMVSSELPEIITVCD 477 (510)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEcCCHHHHHhhCC
Confidence 88899999988643 788999999985 344443
No 333
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.90 E-value=3.9e-09 Score=109.85 Aligned_cols=151 Identities=19% Similarity=0.270 Sum_probs=96.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh--c-------Cc-------cCCCc-----cccCceEEEEcccchhhhccHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL--E-------GV-------DIETP-----DRRRKMMIACTQPRRVAAMSVSRR 135 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll--~-------~~-------~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~ 135 (727)
.+..|+.++|+|+|||||||++..+.= . .. ++... ...+.+.++++.+.... .++.++
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 106 (253)
T PRK14242 28 EFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFEN 106 (253)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHH
Confidence 367999999999999999999875531 0 11 11000 01224556666665444 477776
Q ss_pred HHHhc---cc-----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhh
Q 004850 136 VAEEM---DV-----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (727)
Q Consensus 136 v~~~~---~~-----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~ 199 (727)
+.... +. .....+|..... ....+..+..+|+|+++++.++++++.+++++|+|| +++|...
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~ 184 (253)
T PRK14242 107 VAYGLRVNGVKDKAYLAERVERSLRHAALWDEV--KDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIA 184 (253)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh--hHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 64321 10 000111110000 011244567899999999999999999999999999 7777777
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 200 ~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
...+..+++++. . +..+|+.||.++. ..+++
T Consensus 185 ~~~l~~~l~~~~-~--~~tvii~tH~~~~~~~~~d 216 (253)
T PRK14242 185 TQKIEELIHELK-A--RYTIIIVTHNMQQAARVSD 216 (253)
T ss_pred HHHHHHHHHHHh-c--CCeEEEEEecHHHHHHhCC
Confidence 888888888873 2 5789999999853 34443
No 334
>PRK13409 putative ATPase RIL; Provisional
Probab=98.90 E-value=4.1e-09 Score=122.08 Aligned_cols=147 Identities=20% Similarity=0.180 Sum_probs=100.1
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCcc-CCCcc--ccCceEEEEcccchhhhccHHHHHHHhccc--------cccc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGVD-IETPD--RRRKMMIACTQPRRVAAMSVSRRVAEEMDV--------TIGE 146 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~-~~~~~--~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--------~~~~ 146 (727)
+..|++++|+|+|||||||++..+. +.. ..... ....+.++++.+......++.+.+...... .+..
T Consensus 362 i~~Geiv~l~G~NGsGKSTLlk~L~--Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~ 439 (590)
T PRK13409 362 IYEGEVIGIVGPNGIGKTTFAKLLA--GVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIK 439 (590)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHH
Confidence 6899999999999999999988643 220 11100 001234455555444456777766532100 0111
Q ss_pred eeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcC
Q 004850 147 EVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSA 224 (727)
Q Consensus 147 ~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SA 224 (727)
.+|.. ...+..+..+|+|+++|+.++++++.+++++|||| +|+|......+..+++++.+.. +..+|++||
T Consensus 440 ~l~l~------~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tviivsH 512 (590)
T PRK13409 440 PLQLE------RLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEER-EATALVVDH 512 (590)
T ss_pred HCCCH------HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeC
Confidence 11111 12356778899999999999999999999999999 8888888888999999987654 678999999
Q ss_pred ccc-HHHHHh
Q 004850 225 TLE-AEKFQG 233 (727)
Q Consensus 225 Tl~-~~~~~~ 233 (727)
.++ ...+++
T Consensus 513 D~~~~~~~aD 522 (590)
T PRK13409 513 DIYMIDYISD 522 (590)
T ss_pred CHHHHHHhCC
Confidence 985 344443
No 335
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.90 E-value=1.2e-09 Score=112.49 Aligned_cols=147 Identities=18% Similarity=0.243 Sum_probs=91.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh-----------cCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcccc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (727)
+..|+.++|+|+|||||||++..+.= ++.++.. ....+.+.++++.+.... .++.+.+.......
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~ 104 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA 104 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC
Confidence 57899999999999999999884431 1111100 000123555565554332 46666654211100
Q ss_pred -------ccceeceeeeecc----c-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 144 -------IGEEVGYSIRFED----C-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 144 -------~~~~vg~~~~~~~----~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
.....+.....+. . ...+..+..+|+|+++++.++++++.+++++|+|| +++|......+..++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~ 184 (238)
T cd03249 105 TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDR 184 (238)
T ss_pred CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 0000111000000 0 01234567899999999999999999999999999 67777777888888887
Q ss_pred HHHhCCCCEEEEEcCcccH
Q 004850 210 VLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~ 228 (727)
+. .+..+|+.||.++.
T Consensus 185 ~~---~g~~vi~~sh~~~~ 200 (238)
T cd03249 185 AM---KGRTTIVIAHRLST 200 (238)
T ss_pred hc---CCCEEEEEeCCHHH
Confidence 63 36889999998754
No 336
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.90 E-value=2.6e-09 Score=108.50 Aligned_cols=149 Identities=16% Similarity=0.253 Sum_probs=91.1
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc-------cccCceEEEEcccchhhhccHHHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-------DRRRKMMIACTQPRRVAAMSVSRRVAE 138 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-------~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (727)
.+..|+.++|+|++||||||++..+. +++.++... ...+.+.++++++... ..++.+++..
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~ 101 (218)
T cd03290 23 RIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITF 101 (218)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-cccHHHHHhh
Confidence 35789999999999999999987432 111111110 0112455666666433 4566666643
Q ss_pred hccc------cccceeceeeeecc-----ccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 139 EMDV------TIGEEVGYSIRFED-----CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 139 ~~~~------~~~~~vg~~~~~~~-----~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
.... .....+|.....+. ....+..+..+|+|+.+++.++++++.+++++|+|| ++++....+.++.
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~ 181 (218)
T cd03290 102 GSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQ 181 (218)
T ss_pred cCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHH
Confidence 2100 00111111100000 001134567899999999999999999999999999 6766666776766
Q ss_pred --HHHHHHHhCCCCEEEEEcCcccH
Q 004850 206 --LLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 206 --ll~~l~~~~~~~~vil~SATl~~ 228 (727)
+++.+. .. +..+|+.||..+.
T Consensus 182 ~~ll~~~~-~~-~~tii~~sH~~~~ 204 (218)
T cd03290 182 EGILKFLQ-DD-KRTLVLVTHKLQY 204 (218)
T ss_pred HHHHHHHh-cC-CCEEEEEeCChHH
Confidence 455543 32 6899999999854
No 337
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.90 E-value=4.1e-09 Score=110.67 Aligned_cols=152 Identities=17% Similarity=0.253 Sum_probs=96.7
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh----------------cCccCCC-----ccccCceEEEEcccchhhhccHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL----------------EGVDIET-----PDRRRKMMIACTQPRRVAAMSVSRR 135 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll----------------~~~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (727)
.+..|+.++|+|+|||||||++..+.= ++.++.. ....+.+.++++.+.... .++.++
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en 113 (269)
T PRK14259 35 DIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYEN 113 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccch-hhHHHH
Confidence 357899999999999999999875431 0111100 001124556676665444 467766
Q ss_pred HHHhcccc------------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHH
Q 004850 136 VAEEMDVT------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (727)
Q Consensus 136 v~~~~~~~------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (727)
+....... ....+|.....+ ...+..+..+|+|+++++.++++++.+++++|+|| +++|.....
T Consensus 114 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~--~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~ 191 (269)
T PRK14259 114 IAFGARINGYTGDMDELVERSLRKAAVWDECK--DKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTL 191 (269)
T ss_pred HhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh--hhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 64221100 001111100000 11245567899999999999999999999999999 777777788
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHhh
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~~ 234 (727)
.+.++++++. . +..+|++||.++ ...++++
T Consensus 192 ~l~~~l~~~~-~--~~tiiivtH~~~~~~~~~d~ 222 (269)
T PRK14259 192 KIEETMHELK-K--NFTIVIVTHNMQQAVRVSDM 222 (269)
T ss_pred HHHHHHHHHh-c--CCEEEEEeCCHHHHHHhcCE
Confidence 8888888873 2 478999999985 3455543
No 338
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.89 E-value=2.5e-09 Score=123.02 Aligned_cols=155 Identities=16% Similarity=0.242 Sum_probs=102.0
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hc-Ccc---CCCc------cccCceEEEEcccchhhhccHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LE-GVD---IETP------DRRRKMMIACTQPRRVAAMSVSRR 135 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~-~~~---~~~~------~~~~~~~i~~t~p~~~~~~~v~~~ 135 (727)
.+..|++++|+|+|||||||++..+. ++ +.. +... ...+.+.++++.+......++.+.
T Consensus 306 ~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~ 385 (520)
T TIGR03269 306 EVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDN 385 (520)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHH
Confidence 36799999999999999999987543 11 110 0000 001235566766654555677777
Q ss_pred HHHhccc------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHH
Q 004850 136 VAEEMDV------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (727)
Q Consensus 136 v~~~~~~------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (727)
+...... .....+|.... ......+..+..+|+|+++|+.++++++.+++++|+|| +++|.....
T Consensus 386 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~ 464 (520)
T TIGR03269 386 LTEAIGLELPDELARMKAVITLKMVGFDEE-KAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKV 464 (520)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCCCc-cchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 7532110 01111221100 00001356778899999999999999999999999999 788888888
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
.++.+++++.+.. +..+|++||.++. ..+++
T Consensus 465 ~l~~~l~~l~~~~-g~tvi~vsHd~~~~~~~~d 496 (520)
T TIGR03269 465 DVTHSILKAREEM-EQTFIIVSHDMDFVLDVCD 496 (520)
T ss_pred HHHHHHHHHHHHc-CcEEEEEeCCHHHHHHhCC
Confidence 8999998876543 6889999999863 44443
No 339
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.89 E-value=1.8e-09 Score=124.44 Aligned_cols=156 Identities=20% Similarity=0.313 Sum_probs=101.1
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH----------hcCccCCCcc------ccCceEEEEcccc--hhhhccHHHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV----------LEGVDIETPD------RRRKMMIACTQPR--RVAAMSVSRRVAE 138 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l----------l~~~~~~~~~------~~~~~~i~~t~p~--~~~~~~v~~~v~~ 138 (727)
.+..|+.++|+|+|||||||++..+. +++.++.... ..+.+.++++.+. .....++.+++..
T Consensus 308 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~ 387 (529)
T PRK15134 308 TLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEE 387 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHH
Confidence 46799999999999999999987543 1111111100 0124566777652 2334567776653
Q ss_pred hcccc---c-----cceeceeeeecccc--ccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHH
Q 004850 139 EMDVT---I-----GEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (727)
Q Consensus 139 ~~~~~---~-----~~~vg~~~~~~~~~--~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~l 206 (727)
..... . ...+......-+.. ..+..+..+|+|+++|+.++++++.+++++|+|| +++|......++.+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 467 (529)
T PRK15134 388 GLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILAL 467 (529)
T ss_pred HHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHH
Confidence 21000 0 00000000000111 1355677899999999999999999999999999 78888888889999
Q ss_pred HHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 207 LKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 207 l~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
++++.+.. +..+|++||.++ ...+++
T Consensus 468 l~~~~~~~-~~tvi~vsHd~~~~~~~~d 494 (529)
T PRK15134 468 LKSLQQKH-QLAYLFISHDLHVVRALCH 494 (529)
T ss_pred HHHHHHhh-CCEEEEEeCCHHHHHHhcC
Confidence 99886643 678999999985 344444
No 340
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.89 E-value=4e-09 Score=111.07 Aligned_cols=151 Identities=17% Similarity=0.256 Sum_probs=96.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH--h--------cCc------cCCC-----ccccCceEEEEcccchhhhccHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV--L--------EGV------DIET-----PDRRRKMMIACTQPRRVAAMSVSRR 135 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l--l--------~~~------~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (727)
.+..|+.++|+|+|||||||++..+. + .+. ++.. ....+.+.++++++.... .++.++
T Consensus 42 ~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~~n 120 (274)
T PRK14265 42 KIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFP-KSIYEN 120 (274)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcccc-ccHHHH
Confidence 35789999999999999999988554 1 110 0100 001224556666665443 366666
Q ss_pred HHHhccc------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHH
Q 004850 136 VAEEMDV------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (727)
Q Consensus 136 v~~~~~~------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (727)
+...... .....+|...... ...+..+..+|+|+++++.++++++.+++++|+|| +++|....+
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~--~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~ 198 (274)
T PRK14265 121 IAFAPRANGYKGNLDELVEDSLRRAAIWEEVK--DKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTR 198 (274)
T ss_pred HHhHHHhcCchHHHHHHHHHHHHHcccchhhH--HHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHH
Confidence 6432100 0001111100000 11245567899999999999999999999999999 788888888
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
.+..+++++.+ +..+|++||.++ ...+++
T Consensus 199 ~l~~~L~~~~~---~~tiii~sH~~~~~~~~~d 228 (274)
T PRK14265 199 QVEELCLELKE---QYTIIMVTHNMQQASRVAD 228 (274)
T ss_pred HHHHHHHHHhc---CCEEEEEeCCHHHHHHhCC
Confidence 88888888742 478999999985 344444
No 341
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.89 E-value=1.1e-09 Score=103.21 Aligned_cols=142 Identities=23% Similarity=0.316 Sum_probs=91.3
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh-c----------CccCCC-ccc---------------cCceEEEEcccchhhhc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL-E----------GVDIET-PDR---------------RRKMMIACTQPRRVAAM 130 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-~----------~~~~~~-~~~---------------~~~~~i~~t~p~~~~~~ 130 (727)
...|+++.|+|.+||||||.+.=+-+ + +..+.- +.. +..+.++++.-...+-+
T Consensus 29 A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHm 108 (256)
T COG4598 29 ANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHM 108 (256)
T ss_pred cCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHH
Confidence 47899999999999999999873322 2 111100 000 00112222222223334
Q ss_pred cHHHHHHH--------------hccccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cC
Q 004850 131 SVSRRVAE--------------EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AH 194 (727)
Q Consensus 131 ~v~~~v~~--------------~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--ah 194 (727)
++.+++.+ +........||.. ...+..+.++|+|+.+|..+++++..+|+++++|| ..
T Consensus 109 tvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~------ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSA 182 (256)
T COG4598 109 TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA------EKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSA 182 (256)
T ss_pred HHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCch------hhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCccc
Confidence 44444421 2222333445543 22346777899999999999999999999999999 44
Q ss_pred cChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 195 ERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 195 er~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
+|+-..+..+.+++++... +++.++++|-|.
T Consensus 183 LDPElVgEVLkv~~~LAeE--grTMv~VTHEM~ 213 (256)
T COG4598 183 LDPELVGEVLKVMQDLAEE--GRTMVVVTHEMG 213 (256)
T ss_pred CCHHHHHHHHHHHHHHHHh--CCeEEEEeeehh
Confidence 5666666678888887766 789999999984
No 342
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.89 E-value=3.5e-09 Score=110.10 Aligned_cols=65 Identities=11% Similarity=0.154 Sum_probs=55.5
Q ss_pred cccc-ccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 162 TVLK-YLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 162 ~~i~-~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
..+. .+|+|+++++.++++++.+++++|+|| +++|......+..+++++.+. +..+|++||.++.
T Consensus 146 ~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--g~tii~~tH~~~~ 213 (252)
T CHL00131 146 RNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTS--ENSIILITHYQRL 213 (252)
T ss_pred cccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEecCHHH
Confidence 4454 499999999999999999999999999 788888888899999887643 6889999998753
No 343
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.89 E-value=3.9e-09 Score=109.88 Aligned_cols=152 Identities=22% Similarity=0.337 Sum_probs=95.0
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhc---------C------ccCCCcc-ccCceEEEEcccch-h-hhccHHHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLE---------G------VDIETPD-RRRKMMIACTQPRR-V-AAMSVSRRVAE 138 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~---------~------~~~~~~~-~~~~~~i~~t~p~~-~-~~~~v~~~v~~ 138 (727)
.+..|+.++|+|+|||||||++..+.-. + .++.... ..+.+.++++++.. . ...++.+.+..
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~ 104 (254)
T PRK10418 25 TLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARE 104 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHH
Confidence 3578999999999999999998754311 1 0010000 01245566666531 1 22344333322
Q ss_pred h---ccc--------cccceeceeeeecccc-ccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHH
Q 004850 139 E---MDV--------TIGEEVGYSIRFEDCS-SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (727)
Q Consensus 139 ~---~~~--------~~~~~vg~~~~~~~~~-~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (727)
. .+. .....+|.. ... ..+..+..+|+|+.+++.++++++.+++++|+|| +++|......+.
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~ 180 (254)
T PRK10418 105 TCLALGKPADDATLTAALEAVGLE----NAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL 180 (254)
T ss_pred HHHHcCCChHHHHHHHHHHHcCCC----ChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH
Confidence 1 110 011111211 000 1245567899999999999999999999999999 677777777888
Q ss_pred HHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
.+++++.+.. +..+|++||.++. ..+++
T Consensus 181 ~~L~~~~~~~-g~til~~sH~~~~~~~~~d 209 (254)
T PRK10418 181 DLLESIVQKR-ALGMLLVTHDMGVVARLAD 209 (254)
T ss_pred HHHHHHHHhc-CcEEEEEecCHHHHHHhCC
Confidence 8888876543 6799999998853 34443
No 344
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.89 E-value=3.7e-09 Score=109.62 Aligned_cols=150 Identities=23% Similarity=0.318 Sum_probs=97.4
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh----------cC------ccCCC-----ccccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|++++|+|+|||||||++..+.= .+ .++.. ....+.+.++++.+.... .++.+++
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l 102 (247)
T TIGR00972 24 IPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNI 102 (247)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHH
Confidence 57899999999999999999875431 11 01110 001224556676665555 6777766
Q ss_pred HHhccc--------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 137 AEEMDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 137 ~~~~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
...... .....+|...... ...+..+..+|+|+++++.++++++.+++++|+|| +++|....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 180 (247)
T TIGR00972 103 AYGPRLHGIKDKKELDEIVEESLKKAALWDEVK--DRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIAT 180 (247)
T ss_pred HhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh--hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 432110 0011112110000 11345667899999999999999999999999999 67777777
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
..+..+++++.+ +..+|++||.++ ...+++
T Consensus 181 ~~l~~~l~~~~~---~~tiiivsH~~~~~~~~~d 211 (247)
T TIGR00972 181 GKIEELIQELKK---KYTIVIVTHNMQQAARISD 211 (247)
T ss_pred HHHHHHHHHHHh---cCeEEEEecCHHHHHHhCC
Confidence 788888888754 368999999986 344554
No 345
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.88 E-value=1.4e-09 Score=111.70 Aligned_cols=147 Identities=20% Similarity=0.264 Sum_probs=92.3
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhccc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (727)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+... ..++.+++......
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~enl~~~~~~~ 103 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLF-NDTVAENIAYGRPGA 103 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeec-cccHHHHhhccCCCC
Confidence 5789999999999999999987432 11111110 00112345555555433 35676666432110
Q ss_pred c---c---cceeceeeeec----cc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 143 T---I---GEEVGYSIRFE----DC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 143 ~---~---~~~vg~~~~~~----~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
. . ....+.....+ .. ...+..+..+|+|+++++.++++++.+++++|+|| +++|....+.+..++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 183 (234)
T cd03251 104 TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALER 183 (234)
T ss_pred CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 0 0 00011100000 00 11234567899999999999999999999999999 67777778888888887
Q ss_pred HHHhCCCCEEEEEcCcccH
Q 004850 210 VLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~ 228 (727)
+. . +..+|+.||.++.
T Consensus 184 ~~--~-~~tii~~sh~~~~ 199 (234)
T cd03251 184 LM--K-NRTTFVIAHRLST 199 (234)
T ss_pred hc--C-CCEEEEEecCHHH
Confidence 63 2 6789999999853
No 346
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.88 E-value=5.4e-09 Score=120.29 Aligned_cols=72 Identities=18% Similarity=0.246 Sum_probs=61.5
Q ss_pred CccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+..+..+|+|+++|+.++++++.++++++||| +++|......++.+++++.+.. +..+|++||.++. ..+++
T Consensus 163 ~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tviivtHd~~~~~~~~d 237 (520)
T TIGR03269 163 THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKAS-GISMVLTSHWPEVIEDLSD 237 (520)
T ss_pred hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhcC
Confidence 45677899999999999999999999999999 8888899999999999986654 6789999999853 34443
No 347
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.88 E-value=2.2e-09 Score=125.38 Aligned_cols=152 Identities=22% Similarity=0.314 Sum_probs=94.0
Q ss_pred hhhcCCEEEEEcCCCChhhchhhH-----------HHhcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhccc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (727)
.|..|+.++|+|++||||||++.. +.+++.++.. ..-++.++++ .|...+..-++.++++.....
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V-~Q~~~Lf~gSI~eNi~l~~p~ 573 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYV-LQDPFLFSGSIRENIALGNPE 573 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEE-cccchhhcCcHHHHHhcCCCC
Confidence 467899999999999999999874 3344443322 1223345444 455555667788877532110
Q ss_pred ----cc---cceeceeeeecccc-ccCccc----cccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 143 ----TI---GEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 143 ----~~---~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
.+ ....|...-..... .-++.+ .-+|+|++||++++++++.+|++||||| +++|......+.+.+.
T Consensus 574 ~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~ 653 (709)
T COG2274 574 ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL 653 (709)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHH
Confidence 00 00111000000000 001222 2489999999999999999999999999 5666666666666666
Q ss_pred HHHHhCCCCEEEEEcCcccHHHHH
Q 004850 209 EVLKNRPDLKLVVMSATLEAEKFQ 232 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~~~~~~ 232 (727)
++. .+.++|+++|-...-..+
T Consensus 654 ~~~---~~~T~I~IaHRl~ti~~a 674 (709)
T COG2274 654 QIL---QGRTVIIIAHRLSTIRSA 674 (709)
T ss_pred HHh---cCCeEEEEEccchHhhhc
Confidence 653 357999999988654433
No 348
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.88 E-value=1.7e-09 Score=105.28 Aligned_cols=163 Identities=16% Similarity=0.280 Sum_probs=108.7
Q ss_pred CCchHHHHHHHHh----hhcCCEEEEEcCCCChhhchhhH-----------HHhcCccCCCc-cccC--ceEEEEcccch
Q 004850 65 LPVWQQKEEFLQV----LKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIETP-DRRR--KMMIACTQPRR 126 (727)
Q Consensus 65 lp~~~~q~~ii~~----i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~~-~~~~--~~~i~~t~p~~ 126 (727)
.+-++.++.++.- |.+|++|.|+|.||+||||++.. +.+++.++.+. ...+ .+.-+++.|..
T Consensus 12 ~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~ 91 (263)
T COG1101 12 FKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLA 91 (263)
T ss_pred cCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhh
Confidence 3444455555543 57999999999999999999873 33444444331 1111 12234555543
Q ss_pred --hhhccHHHHHH--Hhcccccccee--cee------eeec----cc-cccCccccccChHHHHHHHhccccccCCeeEE
Q 004850 127 --VAAMSVSRRVA--EEMDVTIGEEV--GYS------IRFE----DC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIV 189 (727)
Q Consensus 127 --~~~~~v~~~v~--~~~~~~~~~~v--g~~------~~~~----~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lI 189 (727)
...+++.++++ ..++..-|-.- ... .+.. +. ....+++..+|+|++|-+.+..+.+..+++++
T Consensus 92 gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLL 171 (263)
T COG1101 92 GTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILL 171 (263)
T ss_pred CCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEE
Confidence 24577777763 33322211111 000 0000 00 12367888999999999999999999999999
Q ss_pred eec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 190 LDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 190 lDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
||| |.+|+-...+++.+-.++.... +++.+|++|.|..
T Consensus 172 LDEHTAALDPkta~~vm~lT~kiV~~~-klTtlMVTHnm~~ 211 (263)
T COG1101 172 LDEHTAALDPKTAEFVMELTAKIVEEH-KLTTLMVTHNMED 211 (263)
T ss_pred ecchhhcCCcchHHHHHHHHHHHHHhc-CCceEEEeccHHH
Confidence 999 8889999999999999998886 8999999999953
No 349
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.88 E-value=2.9e-09 Score=109.12 Aligned_cols=145 Identities=22% Similarity=0.275 Sum_probs=90.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhc--------Cc-------cCCCccc-cCceEEEEcccch-h-hhccHHHHHHHh
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLE--------GV-------DIETPDR-RRKMMIACTQPRR-V-AAMSVSRRVAEE 139 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~--------~~-------~~~~~~~-~~~~~i~~t~p~~-~-~~~~v~~~v~~~ 139 (727)
+..|+.++|+|+|||||||++..+.=. .. ++..... .+.+.++++.+.. + ...++.+.+...
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~ 88 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIET 88 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHH
Confidence 578999999999999999998754311 10 0000000 1245566666531 2 224444443211
Q ss_pred c---cc----------cccceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHH
Q 004850 140 M---DV----------TIGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (727)
Q Consensus 140 ~---~~----------~~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (727)
. +. .....+|. ... ...+..+..+|+|+++++.++++++.+++++|||| +++|......+
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l 164 (230)
T TIGR02770 89 LRSLGKLSKQARALILEALEAVGL----PDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARV 164 (230)
T ss_pred HHHcCccHHHHHHHHHHHHHHcCC----CchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHH
Confidence 1 00 00111111 000 11245667899999999999999999999999999 66666777778
Q ss_pred HHHHHHHHHhCCCCEEEEEcCccc
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~ 227 (727)
...++++.+.. +..+|+.||.++
T Consensus 165 ~~~l~~~~~~~-~~tiii~sH~~~ 187 (230)
T TIGR02770 165 LKLLRELRQLF-GTGILLITHDLG 187 (230)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHH
Confidence 88888876532 678999999875
No 350
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.87 E-value=4.3e-09 Score=109.84 Aligned_cols=150 Identities=21% Similarity=0.309 Sum_probs=97.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh----------cC------ccCCCc-----cccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|+.++|+|+|||||||++..+.= .+ .++... ...+.+.++++.+.... .++.+++
T Consensus 35 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 113 (258)
T PRK14268 35 IPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNV 113 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHH
Confidence 57899999999999999999875431 11 011100 01224556676665444 6777766
Q ss_pred HHhc---cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHH
Q 004850 137 AEEM---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (727)
Q Consensus 137 ~~~~---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (727)
.... +. .....+|..... ....+..+..+|+|+++++.++++++.+++++++|| +++|.....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 191 (258)
T PRK14268 114 AYGPRIHGANKKDLDGVVENALRSAALWDET--SDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTA 191 (258)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCCcch--hhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHH
Confidence 4321 10 011111110000 011245667899999999999999999999999999 777778888
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
.+..+++++. . +.++|+.||.++. ..+++
T Consensus 192 ~l~~~l~~l~-~--~~tiiivsH~~~~~~~~~d 221 (258)
T PRK14268 192 RIEDLIMNLK-K--DYTIVIVTHNMQQAARISD 221 (258)
T ss_pred HHHHHHHHHh-h--CCEEEEEECCHHHHHHhCC
Confidence 8888888874 2 5789999999853 44444
No 351
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.87 E-value=4.1e-09 Score=109.77 Aligned_cols=151 Identities=18% Similarity=0.260 Sum_probs=98.3
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh----------cC------ccCCC-----ccccCceEEEEcccchhhhccHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRR 135 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (727)
.+..|+.++|+|+|||||||++..+.= .+ .++.. ....+.+.++++.+... ..++.++
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~en 107 (254)
T PRK14273 29 KILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF-LMSIYDN 107 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc-cCcHHHH
Confidence 367999999999999999999875421 11 11100 00123456677776555 3677777
Q ss_pred HHHhcccc--------------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhh
Q 004850 136 VAEEMDVT--------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (727)
Q Consensus 136 v~~~~~~~--------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~ 199 (727)
+....... ....+|..... ....++.+..+|+|+++++.++++++.+++++|+|| +++|...
T Consensus 108 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~ 185 (254)
T PRK14273 108 ISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV--KDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPIS 185 (254)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh--HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHH
Confidence 64321100 00011110000 011355677899999999999999999999999999 7777777
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 200 ~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
...++.+++++. . +..+|++||.++. ..+++
T Consensus 186 ~~~l~~~l~~~~-~--~~tvii~sH~~~~~~~~~d 217 (254)
T PRK14273 186 TGKIEELIINLK-E--SYTIIIVTHNMQQAGRISD 217 (254)
T ss_pred HHHHHHHHHHHh-c--CCEEEEEeCCHHHHHHhCC
Confidence 888888888873 2 5789999999863 34443
No 352
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.87 E-value=5.1e-09 Score=110.01 Aligned_cols=149 Identities=17% Similarity=0.210 Sum_probs=93.3
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhc-------------Cc------cCCC--c-cccCceEEEEcccchhhhccHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLE-------------GV------DIET--P-DRRRKMMIACTQPRRVAAMSVSRR 135 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~-------------~~------~~~~--~-~~~~~~~i~~t~p~~~~~~~v~~~ 135 (727)
+..|++++|+|+|||||||++..+.=. +. ++.. . ...+.+.++++.+......++.++
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~ 103 (272)
T PRK13547 24 IEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREI 103 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHH
Confidence 578999999999999999998854210 10 0000 0 001123455555443334667776
Q ss_pred HHHhcccc---cc-------ceeceeeeeccc-cccCccccccChHHHHHHHhccccc---------cCCeeEEeec--c
Q 004850 136 VAEEMDVT---IG-------EEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLL---------ERYKVIVLDE--A 193 (727)
Q Consensus 136 v~~~~~~~---~~-------~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll---------~~~~~lIlDE--a 193 (727)
+....... .+ ..+.......+. ...+..+..+|+|+++++.++++++ .+++++|||| +
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~ 183 (272)
T PRK13547 104 VLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTA 183 (272)
T ss_pred HhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccc
Confidence 64321000 00 000000000000 1124566789999999999999998 5999999999 7
Q ss_pred CcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 194 HERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 194 her~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
++|......+++++.++.+.. +..+|++||.++
T Consensus 184 ~LD~~~~~~l~~~l~~~~~~~-~~tviiisH~~~ 216 (272)
T PRK13547 184 ALDLAHQHRLLDTVRRLARDW-NLGVLAIVHDPN 216 (272)
T ss_pred cCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHH
Confidence 777888888999998876543 678999999985
No 353
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.87 E-value=4.1e-09 Score=111.07 Aligned_cols=155 Identities=20% Similarity=0.300 Sum_probs=104.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhH----------------HHhcCccCCCc-------cccCceEEEEcccch--hhhcc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQ----------------FVLEGVDIETP-------DRRRKMMIACTQPRR--VAAMS 131 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~----------------~ll~~~~~~~~-------~~~~~~~i~~t~p~~--~~~~~ 131 (727)
.+..|+.++++|++|||||-.... +.+++.++... -+...+.++++.|-- .+..+
T Consensus 32 ~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~t 111 (534)
T COG4172 32 DIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHT 111 (534)
T ss_pred eecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhH
Confidence 467999999999999999975432 23333332221 012246677877732 23344
Q ss_pred HHHHHH--------------HhccccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeecc--Cc
Q 004850 132 VSRRVA--------------EEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEA--HE 195 (727)
Q Consensus 132 v~~~v~--------------~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEa--he 195 (727)
+-+.++ +.+..++...||... -....+..++.+|+|+.+|++++.+++.+|+++|-||. .+
T Consensus 112 Ig~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~---p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTAL 188 (534)
T COG4172 112 IGKQLAEVLRLHRGLSRAAARARALELLELVGIPE---PEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTAL 188 (534)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCc---hhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchh
Confidence 444442 233345556676541 11224677889999999999999999999999999993 22
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHhhh
Q 004850 196 RTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGYF 235 (727)
Q Consensus 196 r~~~~d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~~f 235 (727)
|-.-..-++++++++.++. +..++++||++. +..|+++.
T Consensus 189 DVtvQaQIL~Ll~~Lq~~~-gMa~lfITHDL~iVr~~ADrV 228 (534)
T COG4172 189 DVTVQAQILDLLKELQAEL-GMAILFITHDLGIVRKFADRV 228 (534)
T ss_pred hhhhHHHHHHHHHHHHHHh-CcEEEEEeccHHHHHHhhhhE
Confidence 3333445899999988776 899999999997 46777654
No 354
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.87 E-value=2.1e-09 Score=122.75 Aligned_cols=70 Identities=20% Similarity=0.348 Sum_probs=60.0
Q ss_pred CccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHH
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQ 232 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~ 232 (727)
+..+..+|+|+++|+.++.+++.+++++++|| +++|......+.++++++.+. +..+|++||.++ ...++
T Consensus 130 ~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tvii~tH~~~~~~~~~ 202 (490)
T PRK10938 130 DRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS--GITLVLVLNRFDEIPDFV 202 (490)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHhhC
Confidence 56677899999999999999999999999999 888888899999999998543 678999999985 33444
No 355
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.87 E-value=3.4e-09 Score=110.84 Aligned_cols=152 Identities=20% Similarity=0.265 Sum_probs=95.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh----------cC------ccCCCc-----cccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|+.++|+|+|||||||++..+.= .+ .++... ...+.+.++++.+..+. .++.+++
T Consensus 30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl 108 (261)
T PRK14258 30 IYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNV 108 (261)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHH
Confidence 67999999999999999999874331 11 011000 01123445565554444 6776666
Q ss_pred HHhc---cc----c-------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 137 AEEM---DV----T-------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 137 ~~~~---~~----~-------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
.... +. . ....+|..... ....+..+..+|+|+.+++.++++++.+++++|+|| ++.|....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~ 186 (261)
T PRK14258 109 AYGVKIVGWRPKLEIDDIVESALKDADLWDEI--KHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIAS 186 (261)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHcCCcchh--hhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 4321 00 0 00111110000 011245567899999999999999999999999999 67777777
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
..+..+++++.... +..+|++||.++ ...+++
T Consensus 187 ~~l~~~l~~l~~~~-~~tiiivsH~~~~i~~~~d 219 (261)
T PRK14258 187 MKVESLIQSLRLRS-ELTMVIVSHNLHQVSRLSD 219 (261)
T ss_pred HHHHHHHHHHHHhC-CCEEEEEECCHHHHHHhcC
Confidence 77888888875433 689999999985 344443
No 356
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.87 E-value=5.4e-09 Score=108.58 Aligned_cols=151 Identities=25% Similarity=0.294 Sum_probs=97.5
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh----------cC------ccCCC-----ccccCceEEEEcccchhhhccHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRR 135 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (727)
.+..|+.++|+|+|||||||++..+.= .+ .++.. ....+.+.++++++.... .++.++
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~ 103 (250)
T PRK14262 25 KIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDN 103 (250)
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHH
Confidence 357899999999999999999875441 11 01100 001234566777766554 677776
Q ss_pred HHHhcc---cc-----------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhh
Q 004850 136 VAEEMD---VT-----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (727)
Q Consensus 136 v~~~~~---~~-----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~ 199 (727)
+..... .. ....+|..... ....+..+..+|+|+++|+.++++++.+++++|+|| +++|...
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~ 181 (250)
T PRK14262 104 VAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV--KSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181 (250)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh--HHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHH
Confidence 643211 00 00111111000 011345667899999999999999999999999999 7777777
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 200 TDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 200 ~d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
.+.+..+++++.+ +..+|++||.++ ...+++
T Consensus 182 ~~~l~~~l~~~~~---~~tili~sH~~~~~~~~~d 213 (250)
T PRK14262 182 TQRIEKLLEELSE---NYTIVIVTHNIGQAIRIAD 213 (250)
T ss_pred HHHHHHHHHHHhc---CcEEEEEeCCHHHHHHhCC
Confidence 7788888888742 468999999875 344443
No 357
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.86 E-value=2.8e-09 Score=109.70 Aligned_cols=147 Identities=19% Similarity=0.242 Sum_probs=91.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhccc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (727)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++++... ..++.+++......
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~~nl~~~~~~~ 102 (236)
T cd03253 24 IPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLF-NDTIGYNIRYGRPDA 102 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhh-cchHHHHHhhcCCCC
Confidence 5789999999999999999987543 11111110 00112355566665433 35666666432100
Q ss_pred c------ccceeceeeeeccc-----cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 143 T------IGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 143 ~------~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
. ....++.....+.. ......+..+|+|+.+++.++++++.+++++|+|| +++|....+.+..++++
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 182 (236)
T cd03253 103 TDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD 182 (236)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 0 00011111000000 01133456899999999999999999999999999 67777777778888877
Q ss_pred HHHhCCCCEEEEEcCcccH
Q 004850 210 VLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~ 228 (727)
+.+ +..+|++||..+.
T Consensus 183 ~~~---~~tiii~sh~~~~ 198 (236)
T cd03253 183 VSK---GRTTIVIAHRLST 198 (236)
T ss_pred hcC---CCEEEEEcCCHHH
Confidence 642 6789999998854
No 358
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.86 E-value=4.3e-09 Score=104.27 Aligned_cols=155 Identities=15% Similarity=0.247 Sum_probs=101.0
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh-----------cCccCCCccccCceEEEEcccchhhhccHHHHH---HHhcccc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIETPDRRRKMMIACTQPRRVAAMSVSRRV---AEEMDVT 143 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v---~~~~~~~ 143 (727)
+..|++.+++|+||+||||.|..++- ++.++.. .....++.+|-.--..+-+++.+.+ +.-.+..
T Consensus 25 v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~-~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~ 103 (300)
T COG4152 25 VPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ-EIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMP 103 (300)
T ss_pred ecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh-hhhhhcccChhhhccCccCcHHHHHHHHHHhcCCc
Confidence 57899999999999999999986541 1111110 0011223333222223445555444 3222211
Q ss_pred c---cceec-eeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCC
Q 004850 144 I---GEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDL 217 (727)
Q Consensus 144 ~---~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~ 217 (727)
- ...+. |--+++-......+|..+|-|..|.+-.-.+++.+|++||||| .++|+.++..+.+.+.++... +.
T Consensus 104 ~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~--Ga 181 (300)
T COG4152 104 KAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE--GA 181 (300)
T ss_pred HHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhc--CC
Confidence 1 11111 1112222233467788999999999877777899999999999 789999999999999998665 88
Q ss_pred EEEEEcCcc-cHHHHHhhh
Q 004850 218 KLVVMSATL-EAEKFQGYF 235 (727)
Q Consensus 218 ~vil~SATl-~~~~~~~~f 235 (727)
+||+.||-| +++.+++..
T Consensus 182 tIifSsH~Me~vEeLCD~l 200 (300)
T COG4152 182 TIIFSSHRMEHVEELCDRL 200 (300)
T ss_pred EEEEecchHHHHHHHhhhh
Confidence 999999999 478888754
No 359
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.86 E-value=5e-09 Score=109.02 Aligned_cols=152 Identities=20% Similarity=0.279 Sum_probs=98.1
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh----------cC------ccCC--C---ccccCceEEEEcccchhhhccHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIE--T---PDRRRKMMIACTQPRRVAAMSVSRR 135 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~--~---~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (727)
.+..|+.++|+|+|||||||++..+.= .+ .++. . ......+.++++.+......++.++
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~en 105 (253)
T PRK14267 26 KIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDN 105 (253)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHH
Confidence 367899999999999999999875431 11 1111 0 0011245667777665555677777
Q ss_pred HHHhc---cc------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChh
Q 004850 136 VAEEM---DV------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTL 198 (727)
Q Consensus 136 v~~~~---~~------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~ 198 (727)
+.... +. .....+|...... ...+..+..+|+|+++++.++++++.+++++|+|| +++|..
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 183 (253)
T PRK14267 106 VAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK--DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPV 183 (253)
T ss_pred HHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh--hhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 65321 10 0011112100000 11345667899999999999999999999999999 667777
Q ss_pred hHHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 199 ATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 199 ~~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
....+..+++++.+ +..+|+.||.++. ..+++
T Consensus 184 ~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d 216 (253)
T PRK14267 184 GTAKIEELLFELKK---EYTIVLVTHSPAQAARVSD 216 (253)
T ss_pred HHHHHHHHHHHHhh---CCEEEEEECCHHHHHhhCC
Confidence 77778888888742 4789999998853 34443
No 360
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.86 E-value=2.6e-09 Score=110.65 Aligned_cols=150 Identities=20% Similarity=0.340 Sum_probs=96.3
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhc--------C------ccCCC---ccccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLE--------G------VDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~--------~------~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
+..|+.++|+|+|||||||++..+.-. + .++.. ....+.+.++++++.... .++.+++....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~ 103 (246)
T PRK14269 25 IEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAP 103 (246)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHH
Confidence 578999999999999999998854311 1 11110 011234567777765543 57777764221
Q ss_pred ---cc------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHH
Q 004850 141 ---DV------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (727)
Q Consensus 141 ---~~------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (727)
+. .....+|...... ...+..+..+|+|+.+++.++++++.+++++++|| ++.|......+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l 181 (246)
T PRK14269 104 KLHGMIKNKDEEEALVVDCLQKVGLFEEVK--DKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVI 181 (246)
T ss_pred hhcCcccChHHHHHHHHHHHHHcCCChhhh--HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 00 0011111100000 11234566799999999999999999999999999 66677777778
Q ss_pred HHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
...++++. . +.++|++||.++ ...+++
T Consensus 182 ~~~l~~~~--~-~~tiii~tH~~~~~~~~~d 209 (246)
T PRK14269 182 EELLKELS--H-NLSMIMVTHNMQQGKRVAD 209 (246)
T ss_pred HHHHHHHh--C-CCEEEEEecCHHHHHhhCc
Confidence 88887763 2 678999999985 344444
No 361
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.86 E-value=3.1e-09 Score=121.63 Aligned_cols=155 Identities=16% Similarity=0.247 Sum_probs=100.5
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhc-------C------ccCCCcc----ccCceEEEEcccchhhhccHHHHHHHh
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLE-------G------VDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~-------~------~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
.+.+|+.++|+|+|||||||++..+.=. | .++.... ....+.++++.+......++.+++...
T Consensus 23 ~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 102 (500)
T TIGR02633 23 EVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLG 102 (500)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhh
Confidence 3578999999999999999998754311 1 0000000 013466777776555556777776432
Q ss_pred cccc-----c-----cceeceeeeecccc-c-cCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 140 MDVT-----I-----GEEVGYSIRFEDCS-S-ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 140 ~~~~-----~-----~~~vg~~~~~~~~~-~-~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
.... . ...+......-+.. . .+..+..+|+|+++|+.++++++.+++++|+|| +++|......+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~ 182 (500)
T TIGR02633 103 NEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLD 182 (500)
T ss_pred ccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 1100 0 00000000000011 1 134577899999999999999999999999999 7888888889999
Q ss_pred HHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 206 LLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
+++++.+. +..+|++||.++ ...+++
T Consensus 183 ~l~~l~~~--g~tviiitHd~~~~~~~~d 209 (500)
T TIGR02633 183 IIRDLKAH--GVACVYISHKLNEVKAVCD 209 (500)
T ss_pred HHHHHHhC--CCEEEEEeCcHHHHHHhCC
Confidence 99988543 788999999985 344444
No 362
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.85 E-value=5.1e-09 Score=109.29 Aligned_cols=151 Identities=18% Similarity=0.271 Sum_probs=97.2
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh----------cC------ccCCC-----ccccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|+.++|+|+|||||||++..+.= .+ .++.. ....+.+.++++.+......++.+++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl 106 (258)
T PRK14241 27 IEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNV 106 (258)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHH
Confidence 57899999999999999999875431 11 01100 00112355666665555556777766
Q ss_pred HHhc---cc-----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 137 AEEM---DV-----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 137 ~~~~---~~-----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
.... +. .....+|..... ....+..+..+|+|+++++.++++++.+++++|+|| +++|....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 184 (258)
T PRK14241 107 VAGLKLNGVRNKKDLDELVEKSLRGANLWNEV--KDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPIST 184 (258)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh--hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 4321 10 001111110000 012245667899999999999999999999999999 77777778
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
..+..+++++. . +..+|++||.++. ..+++
T Consensus 185 ~~l~~~l~~~~-~--~~tviivsH~~~~~~~~~d 215 (258)
T PRK14241 185 LAIEDLINELK-Q--DYTIVIVTHNMQQAARVSD 215 (258)
T ss_pred HHHHHHHHHHh-c--CCEEEEEecCHHHHHHhCC
Confidence 88888888873 2 4689999998853 44443
No 363
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.85 E-value=6.1e-09 Score=108.31 Aligned_cols=150 Identities=20% Similarity=0.296 Sum_probs=98.0
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH--h--------cCc------cCCCc-----cccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV--L--------EGV------DIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l--l--------~~~------~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|+.++|+|+|||||||++..+. . .|. ++... ...+.+.++++++.... .++.+++
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 106 (252)
T PRK14239 28 FYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENV 106 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHH
Confidence 5689999999999999999988653 1 110 01000 01224667777766554 6777777
Q ss_pred HHhc---ccc-----------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 137 AEEM---DVT-----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 137 ~~~~---~~~-----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
.... +.. ....+|..... ....+..+..+|+|+++++.++++++.+++++|+|| +++|....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 184 (252)
T PRK14239 107 VYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV--KDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISA 184 (252)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH--HHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 5321 100 00111110000 011245667899999999999999999999999999 77777888
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
..+..+++++.+ +..+|++||.++ ...+++
T Consensus 185 ~~l~~~l~~~~~---~~tii~~sH~~~~~~~~~d 215 (252)
T PRK14239 185 GKIEETLLGLKD---DYTMLLVTRSMQQASRISD 215 (252)
T ss_pred HHHHHHHHHHhh---CCeEEEEECCHHHHHHhCC
Confidence 888888888742 468999999885 344444
No 364
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.85 E-value=5.5e-09 Score=108.54 Aligned_cols=149 Identities=18% Similarity=0.295 Sum_probs=95.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh----------cCc------cCCCc-----cccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL----------EGV------DIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~~------~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|+.++|+|+|||||||++..+.= .|. ++... ...+.+.++++++.... .++.+++
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl 104 (250)
T PRK14245 26 IEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENV 104 (250)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHH
Confidence 57899999999999999999886531 111 01000 01224566666665443 4666666
Q ss_pred HHhccc--------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 137 AEEMDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 137 ~~~~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
...... .....+|...... ...+..+..+|+|+++++.++++++.+++++|+|| +++|....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 182 (250)
T PRK14245 105 AYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK--DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPIST 182 (250)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh--hhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 432110 0001111100000 11245566899999999999999999999999999 77777788
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHH
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQ 232 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~ 232 (727)
..+..+++++. . +..+|++||..+. ..++
T Consensus 183 ~~l~~~l~~~~-~--~~tiiivtH~~~~~~~~~ 212 (250)
T PRK14245 183 AKVEELIHELK-K--DYTIVIVTHNMQQAARVS 212 (250)
T ss_pred HHHHHHHHHHh-c--CCeEEEEeCCHHHHHhhC
Confidence 88889888873 2 5789999998853 3444
No 365
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.84 E-value=1e-08 Score=97.07 Aligned_cols=105 Identities=27% Similarity=0.385 Sum_probs=74.2
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeecc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED 156 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~ 156 (727)
.+..|+.++|.|+|||||||++..+. +. ... ..+- +..-. . ..++|...
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~--G~-~~~---~~G~-i~~~~-~--------------------~~i~~~~~--- 70 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIA--GE-LEP---DEGI-VTWGS-T--------------------VKIGYFEQ--- 70 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHc--CC-CCC---CceE-EEECC-e--------------------EEEEEEcc---
Confidence 35789999999999999999987542 22 111 1121 21111 0 13333311
Q ss_pred ccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 157 CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 157 ~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
+|+|++++..++++++.+++++|+|| ++.|....+.+.+.++++ +..+++.||..+
T Consensus 71 ----------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~til~~th~~~ 128 (144)
T cd03221 71 ----------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY-----PGTVILVSHDRY 128 (144)
T ss_pred ----------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEECCHH
Confidence 99999999999999999999999999 666666667777777664 358899999875
No 366
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.84 E-value=4.2e-09 Score=120.72 Aligned_cols=155 Identities=15% Similarity=0.234 Sum_probs=96.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc----ccCceEEEEcccc---hhhhccHHHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD----RRRKMMIACTQPR---RVAAMSVSRRVAE 138 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~----~~~~~~i~~t~p~---~~~~~~v~~~v~~ 138 (727)
.+..|+.++|+|+|||||||++..+. +++.++.... ....+.++++.+. .....++.+++..
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~ 364 (510)
T PRK15439 285 EVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCA 364 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHh
Confidence 46789999999999999999987543 1111111100 0123444554431 2223455555421
Q ss_pred h----ccc--c---ccceeceeeeeccc--cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 139 E----MDV--T---IGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 139 ~----~~~--~---~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
. ... . ....+......-+. ...+..+..+|+|+++|+.++++++.++++||||| +++|......+..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~ 444 (510)
T PRK15439 365 LTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQ 444 (510)
T ss_pred hhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHH
Confidence 1 000 0 00000000000011 12356678899999999999999999999999999 8888888889999
Q ss_pred HHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 206 LLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
+++++... +..+|++||.++ ...+++
T Consensus 445 ~l~~l~~~--g~tiIivsHd~~~i~~~~d 471 (510)
T PRK15439 445 LIRSIAAQ--NVAVLFISSDLEEIEQMAD 471 (510)
T ss_pred HHHHHHhC--CCEEEEECCCHHHHHHhCC
Confidence 99988653 688999999985 344444
No 367
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=6.4e-09 Score=108.10 Aligned_cols=150 Identities=19% Similarity=0.281 Sum_probs=95.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh----------cC------ccCCCc-----cccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|+.++|+|+|||||||++..+.= .+ .++... ...+.+.++++++.... .++.+++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl 105 (251)
T PRK14251 27 FEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNV 105 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHH
Confidence 57899999999999999998874431 11 111100 01223556666655443 5777766
Q ss_pred HHhcc---c-----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 137 AEEMD---V-----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 137 ~~~~~---~-----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
..... . .....+|... ......+..+..+|+|+.+++.++++++.+++++|+|| +++|....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~ 183 (251)
T PRK14251 106 AYGLKIAGVKDKELIDQRVEESLKQAAIWK--ETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISS 183 (251)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCCc--chHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHH
Confidence 42211 0 0001111100 00011245667899999999999999999999999999 67777777
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
..+..+++++.+ +..+|++||.++. ..+++
T Consensus 184 ~~l~~~l~~~~~---~~tiiiisH~~~~~~~~~d 214 (251)
T PRK14251 184 SEIEETLMELKH---QYTFIMVTHNLQQAGRISD 214 (251)
T ss_pred HHHHHHHHHHHc---CCeEEEEECCHHHHHhhcC
Confidence 788888888732 4789999999853 44443
No 368
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.83 E-value=1.7e-08 Score=93.44 Aligned_cols=136 Identities=32% Similarity=0.310 Sum_probs=79.8
Q ss_pred EEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeecccc----
Q 004850 83 VIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS---- 158 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~---- 158 (727)
.+++.|+||+|||+.+...+........ . ..+++..|......+..+.+...... ...+.+........
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~---~--~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 74 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLK---G--GQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEK 74 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhccc---C--CCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHH
Confidence 5788999999999998876655431111 1 12444456666666666655554431 12222221111111
Q ss_pred --ccCccccccChHHHHHHHhccc-cccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcc
Q 004850 159 --SARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (727)
Q Consensus 159 --~~~~~i~~lT~G~l~r~~~~~~-ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl 226 (727)
.....+.++|.+.+.+...... .....+++|+||+|. ..................+..+++++|||.
T Consensus 75 ~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~-~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 75 LLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHR-LLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHH-HhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 3466788899998887766543 366789999999995 222222221122223334578999999995
No 369
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.83 E-value=8e-09 Score=107.96 Aligned_cols=150 Identities=22% Similarity=0.294 Sum_probs=95.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh----------cC------ccCCCc-----cccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|+.++|+|+|||||||++..+.= .+ .++... ...+.+.++++.+.... .++.+++
T Consensus 36 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl 114 (260)
T PRK10744 36 IAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNI 114 (260)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHH
Confidence 57899999999999999999875431 11 011000 01224556677665444 5777666
Q ss_pred HHhcc----c----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 137 AEEMD----V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 137 ~~~~~----~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
..... . .....+|..... ....+..+..+|+|+++++.++++++.+++++|+|| +++|....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 192 (260)
T PRK10744 115 AFGVRLFEKLSRAEMDERVEWALTKAALWNEV--KDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPIST 192 (260)
T ss_pred hhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh--HHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHH
Confidence 42210 0 001111110000 011245566899999999999999999999999999 67777777
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
..++.+++++. . +.++|++||.++. ..+++
T Consensus 193 ~~l~~~L~~~~-~--~~tiii~sH~~~~~~~~~d 223 (260)
T PRK10744 193 GRIEELITELK-Q--DYTVVIVTHNMQQAARCSD 223 (260)
T ss_pred HHHHHHHHHHh-c--CCeEEEEeCCHHHHHHhCC
Confidence 78888888873 2 5689999998853 34443
No 370
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.83 E-value=2.8e-09 Score=124.51 Aligned_cols=148 Identities=21% Similarity=0.267 Sum_probs=90.1
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc--
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (727)
.+.+|+.++|+|++||||||++.... +++.++.. ...++.+.+++++|. +..-++.+++.-...
T Consensus 372 ~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~-LF~~TI~eNI~~g~~~~ 450 (588)
T PRK11174 372 TLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQ-LPHGTLRDNVLLGNPDA 450 (588)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCc-CCCcCHHHHhhcCCCCC
Confidence 35799999999999999999987542 12211111 111224556666654 444577777743210
Q ss_pred -----ccccceeceeeeecccc-ccCcc----ccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 142 -----VTIGEEVGYSIRFEDCS-SARTV----LKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 142 -----~~~~~~vg~~~~~~~~~-~~~~~----i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
......+|......... ..++. -..+|+|++||+.++++++.+++++|||| ++.|......+.+.+.+
T Consensus 451 ~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~ 530 (588)
T PRK11174 451 SDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA 530 (588)
T ss_pred CHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 01111112110000000 01122 23599999999999999999999999999 56666555556665555
Q ss_pred HHHhCCCCEEEEEcCcccH
Q 004850 210 VLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~ 228 (727)
+ .++.++|++||.++.
T Consensus 531 ~---~~~~TvIiItHrl~~ 546 (588)
T PRK11174 531 A---SRRQTTLMVTHQLED 546 (588)
T ss_pred H---hCCCEEEEEecChHH
Confidence 4 347899999999854
No 371
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.83 E-value=6.6e-09 Score=107.93 Aligned_cols=149 Identities=22% Similarity=0.306 Sum_probs=95.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh----------cC------ccCCC-----ccccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|+.++|+|+|||||||++..+.= .+ .++.. ......+.++++.+.... .++.+++
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni 104 (250)
T PRK14240 26 IEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNV 104 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHH
Confidence 56899999999999999999875431 11 01110 001224556676665444 6777766
Q ss_pred HHhcccc-------c-------cceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 137 AEEMDVT-------I-------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 137 ~~~~~~~-------~-------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
....... . ...++..... ....+..+..+|+|+++++.++++++.+++++|+|| +++|....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 182 (250)
T PRK14240 105 AYGPRTHGIKDKKKLDEIVEKSLKGAALWDEV--KDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPIST 182 (250)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh--HHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 4321000 0 0011100000 011245567899999999999999999999999999 77777778
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHH
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQ 232 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~ 232 (727)
..+..+++++. . +.++|+.||.++ ...++
T Consensus 183 ~~l~~~l~~~~-~--~~tiii~sH~~~~~~~~~ 212 (250)
T PRK14240 183 LKIEELIQELK-K--DYTIVIVTHNMQQASRIS 212 (250)
T ss_pred HHHHHHHHHHh-c--CCeEEEEEeCHHHHHhhC
Confidence 88888888873 2 578999999985 34444
No 372
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=4e-09 Score=117.00 Aligned_cols=149 Identities=24% Similarity=0.364 Sum_probs=95.5
Q ss_pred HhhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHH---
Q 004850 76 QVLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAE--- 138 (727)
Q Consensus 76 ~~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~--- 138 (727)
-.+..|+.++++|++||||||++.... +++.+..+ ..-.+.+..++++|.-.+ -++.+++.-
T Consensus 342 ~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~~ 420 (559)
T COG4988 342 LTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLARP 420 (559)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccCC
Confidence 457899999999999999999987432 23322221 112234566777776443 466666621
Q ss_pred ----hccccccceeceeeeeccccccCcccc----ccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 139 ----EMDVTIGEEVGYSIRFEDCSSARTVLK----YLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 139 ----~~~~~~~~~vg~~~~~~~~~~~~~~i~----~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
+.-..+.+.+|...-...-...++.|. -+|+|+.||+.++++++++.+++++|| +|.|......++..+.
T Consensus 421 ~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~ 500 (559)
T COG4988 421 DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQ 500 (559)
T ss_pred cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHH
Confidence 111122223332111111011233333 389999999999999999999999999 8877666666777777
Q ss_pred HHHHhCCCCEEEEEcCcccH
Q 004850 209 EVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~~ 228 (727)
++.+ +..+++.||.+..
T Consensus 501 ~l~~---~ktvl~itHrl~~ 517 (559)
T COG4988 501 ELAK---QKTVLVITHRLED 517 (559)
T ss_pred HHHh---CCeEEEEEcChHH
Confidence 7654 4689999999853
No 373
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.83 E-value=4.3e-09 Score=134.00 Aligned_cols=150 Identities=18% Similarity=0.194 Sum_probs=104.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC--ccccCceEEEEcccchhhhccHHHHHHHh---c
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEE---M 140 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~---~ 140 (727)
.+.+|+.++++|+|||||||++..+. +++.++.. ....+.++++++.+....-+++.+.+.-. .
T Consensus 1961 ~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~ 2040 (2272)
T TIGR01257 1961 GVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR 2040 (2272)
T ss_pred EEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998543 22222211 01123466777766555566777766421 1
Q ss_pred ccc----------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 141 DVT----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 141 ~~~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
+.. +...+|.. ...+..+..+|+|+++|+.++.+++.++++|+||| +++|......+.++++
T Consensus 2041 g~~~~~~~~~v~~lLe~lgL~------~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~ 2114 (2272)
T TIGR01257 2041 GVPAEEIEKVANWSIQSLGLS------LYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIV 2114 (2272)
T ss_pred CCCHHHHHHHHHHHHHHcCCH------HHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 110 01111111 12356778899999999999999999999999999 8888999999999999
Q ss_pred HHHHhCCCCEEEEEcCccc-HHHHHhh
Q 004850 209 EVLKNRPDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~-~~~~~~~ 234 (727)
++.++ +..+|+.||.++ .+.+++.
T Consensus 2115 ~l~~~--g~TIILtTH~mee~e~lcDr 2139 (2272)
T TIGR01257 2115 SIIRE--GRAVVLTSHSMEECEALCTR 2139 (2272)
T ss_pred HHHhC--CCEEEEEeCCHHHHHHhCCE
Confidence 97654 789999999995 4556654
No 374
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.83 E-value=9e-09 Score=107.81 Aligned_cols=151 Identities=17% Similarity=0.281 Sum_probs=95.4
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh----------cCc------cCCC-----ccccCceEEEEcccchhhhccHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL----------EGV------DIET-----PDRRRKMMIACTQPRRVAAMSVSRR 135 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll----------~~~------~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (727)
.+..|+.++|+|+|||||||++..+.= .+. ++.. ....+.+.++++.+..+. .++.++
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 110 (264)
T PRK14243 32 DIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDN 110 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcccc-ccHHHH
Confidence 357899999999999999999875441 110 1100 001223556666654443 366666
Q ss_pred HHHhcccc------------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHH
Q 004850 136 VAEEMDVT------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (727)
Q Consensus 136 v~~~~~~~------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (727)
+....... ....+|...... ...+..+..+|+|+.+++.++++++.+++++|+|| +++|.....
T Consensus 111 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~--~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 188 (264)
T PRK14243 111 IAYGARINGYKGDMDELVERSLRQAALWDEVK--DKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTL 188 (264)
T ss_pred HHhhhhhcCcchHHHHHHHHHHHHhCchhhHH--HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 64321100 001111100000 11245666799999999999999999999999999 677777777
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
.+.++++++.+ +..+|++||.++ ...+++
T Consensus 189 ~l~~~L~~~~~---~~tvi~vtH~~~~~~~~~d 218 (264)
T PRK14243 189 RIEELMHELKE---QYTIIIVTHNMQQAARVSD 218 (264)
T ss_pred HHHHHHHHHhc---CCEEEEEecCHHHHHHhCC
Confidence 88888888743 368999999875 344443
No 375
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.83 E-value=4.7e-09 Score=120.21 Aligned_cols=156 Identities=16% Similarity=0.265 Sum_probs=98.5
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh------------cCccCCCc----cccCceEEEEcccc---hhhhccHHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL------------EGVDIETP----DRRRKMMIACTQPR---RVAAMSVSRRVA 137 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll------------~~~~~~~~----~~~~~~~i~~t~p~---~~~~~~v~~~v~ 137 (727)
.+..|+.++|+|+|||||||++..+.= ++.++... ...+.+.++++.+. .....++.+++.
T Consensus 282 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~ 361 (500)
T TIGR02633 282 SLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNIT 361 (500)
T ss_pred EEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhc
Confidence 468999999999999999999875431 11111000 00123455555532 333455655553
Q ss_pred Hhcccccc-----------ceeceeeeecccc--ccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHH
Q 004850 138 EEMDVTIG-----------EEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (727)
Q Consensus 138 ~~~~~~~~-----------~~vg~~~~~~~~~--~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (727)
........ ..+......-+.. ..+..+..+|+|+++|+.++++++.+++++|||| +++|......
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 441 (500)
T TIGR02633 362 LSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYE 441 (500)
T ss_pred chhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHH
Confidence 21100000 0000000000111 2356677899999999999999999999999999 8888888888
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCccc-HHHHHhh
Q 004850 203 LFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 203 ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~~ 234 (727)
++++++.+.+. +..+|++||.++ ...++++
T Consensus 442 l~~~l~~l~~~--g~tviivsHd~~~~~~~~d~ 472 (500)
T TIGR02633 442 IYKLINQLAQE--GVAIIVVSSELAEVLGLSDR 472 (500)
T ss_pred HHHHHHHHHhC--CCEEEEECCCHHHHHHhCCE
Confidence 99999988654 788999999985 3445443
No 376
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.83 E-value=4.1e-09 Score=121.50 Aligned_cols=152 Identities=20% Similarity=0.322 Sum_probs=97.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh--c--------------CccCCCcc-------ccCceEEEEcccc--hhhhcc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL--E--------------GVDIETPD-------RRRKMMIACTQPR--RVAAMS 131 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll--~--------------~~~~~~~~-------~~~~~~i~~t~p~--~~~~~~ 131 (727)
.+..|+.++|+|+|||||||++..+.- . +.++.... ..+.+.++++.+. .....+
T Consensus 31 ~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~ 110 (529)
T PRK15134 31 QIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHT 110 (529)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhh
Confidence 356899999999999999999875421 1 11110000 0124567777653 222234
Q ss_pred HHHHHHHhc----cc----------cccceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cC
Q 004850 132 VSRRVAEEM----DV----------TIGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AH 194 (727)
Q Consensus 132 v~~~v~~~~----~~----------~~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--ah 194 (727)
+.+.+.... +. .....+|.. .. ...+..+..+|+|+++|+.++++++.+|++||+|| ++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~ 186 (529)
T PRK15134 111 LEKQLYEVLSLHRGMRREAARGEILNCLDRVGIR----QAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTA 186 (529)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCC----ChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCc
Confidence 444433111 10 011111211 00 01245677899999999999999999999999999 88
Q ss_pred cChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 195 ERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 195 er~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+|......++++++++.+.. +..+|++||.++. ..+++
T Consensus 187 LD~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~~~~d 225 (529)
T PRK15134 187 LDVSVQAQILQLLRELQQEL-NMGLLFITHNLSIVRKLAD 225 (529)
T ss_pred cCHHHHHHHHHHHHHHHHhc-CCeEEEEcCcHHHHHHhcC
Confidence 88888999999999986543 6789999999863 44443
No 377
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=5.4e-09 Score=119.85 Aligned_cols=155 Identities=16% Similarity=0.246 Sum_probs=99.5
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh------------cCccCCCc----cccCceEEEEcccc---hhhhccHHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL------------EGVDIETP----DRRRKMMIACTQPR---RVAAMSVSRRVA 137 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll------------~~~~~~~~----~~~~~~~i~~t~p~---~~~~~~v~~~v~ 137 (727)
.+..|++++|+|+|||||||++..+.= ++.++... .....+.++++.+. .....++.+++.
T Consensus 284 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~ 363 (506)
T PRK13549 284 SLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNIT 363 (506)
T ss_pred EEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhh
Confidence 468999999999999999999885531 11111000 00123556666542 233456666664
Q ss_pred Hhcc--c-ccc--------ceeceeeeecccc--ccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHH
Q 004850 138 EEMD--V-TIG--------EEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (727)
Q Consensus 138 ~~~~--~-~~~--------~~vg~~~~~~~~~--~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (727)
.... . ..+ ..+......-+.. ..+..+..+|+|+++|+.++++++.+++++|||| +++|......
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~ 443 (506)
T PRK13549 364 LAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYE 443 (506)
T ss_pred hhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHH
Confidence 2110 0 000 0000000000111 2355677899999999999999999999999999 7888888888
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 203 LFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 203 ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
+..+++++.+. +..+|++||.++ ...+++
T Consensus 444 l~~~l~~l~~~--g~tvi~~sHd~~~~~~~~d 473 (506)
T PRK13549 444 IYKLINQLVQQ--GVAIIVISSELPEVLGLSD 473 (506)
T ss_pred HHHHHHHHHHC--CCEEEEECCCHHHHHHhCC
Confidence 99999987653 789999999985 345554
No 378
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.82 E-value=3.2e-09 Score=122.47 Aligned_cols=145 Identities=23% Similarity=0.297 Sum_probs=87.0
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC--ccccCceEEEEcccchhhhccHHHHHHHhcc--
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (727)
.+.+|+.++|+|++||||||++.... +++.++.. ...++.+.+++++|-. ..-++.+++.-...
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~l-F~~TI~eNI~~g~~~~ 435 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHL-FDTTVRDNLRLGRPDA 435 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCccc-ccccHHHHHhccCCCC
Confidence 46899999999999999999987543 12111110 0011245566666653 34577777753210
Q ss_pred -----ccccceeceeeeecccc-ccCccc----cccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 142 -----VTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 142 -----~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
......+|...-..... ..++.+ .-+|+|++||..++++++.+++++|||| ++.|......+.+.+..
T Consensus 436 ~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 436 TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLA 515 (529)
T ss_pred CHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 01111222110000000 012222 3489999999999999999999999999 55555555545555543
Q ss_pred HHHhCCCCEEEEEcCc
Q 004850 210 VLKNRPDLKLVVMSAT 225 (727)
Q Consensus 210 l~~~~~~~~vil~SAT 225 (727)
..++.++|++||.
T Consensus 516 ---~~~~~TvIiItHr 528 (529)
T TIGR02868 516 ---ALSGKTVVVITHH 528 (529)
T ss_pred ---hcCCCEEEEEecC
Confidence 3457899999985
No 379
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=4.1e-09 Score=119.14 Aligned_cols=154 Identities=24% Similarity=0.316 Sum_probs=89.5
Q ss_pred HHHHHhhhcCCEEEEEcCCCChhhchhh-----------HHHhcCccCCCc---cccCceEEEEcccchhhhccHHHHHH
Q 004850 72 EEFLQVLKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIETP---DRRRKMMIACTQPRRVAAMSVSRRVA 137 (727)
Q Consensus 72 ~~ii~~i~~g~~vii~g~TGSGKTt~~~-----------~~ll~~~~~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (727)
+.+-=.|..|++|+++||+||||||.+. ++++++.++..- .-++.++ .+.|+-.+...++.++++
T Consensus 485 k~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig-~V~QEPvLFs~sI~eNI~ 563 (716)
T KOG0058|consen 485 KNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIG-LVGQEPVLFSGSIRENIA 563 (716)
T ss_pred cCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHee-eeeccceeecccHHHHHh
Confidence 3344457899999999999999999776 344555544331 1123443 444555555677877774
Q ss_pred Hhcccc----c------cceeceeeeeccc--cccCccccccChHHHHHHHhccccccCCeeEEeeccC--cChhhHHHH
Q 004850 138 EEMDVT----I------GEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAH--ERTLATDVL 203 (727)
Q Consensus 138 ~~~~~~----~------~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEah--er~~~~d~l 203 (727)
-..... + ....++-..+.+. ...+.+=..+|+|++||+.++++++.+|.+||||||- +|......+
T Consensus 564 YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lV 643 (716)
T KOG0058|consen 564 YGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLV 643 (716)
T ss_pred cCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHH
Confidence 322100 0 0000000001100 0111222369999999999999999999999999963 222222223
Q ss_pred HHHHHHHHHhCCCCEEEEEcCcccHH
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLEAE 229 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~~~ 229 (727)
-+.+.++ ..++++|++-|-+..-
T Consensus 644 q~aL~~~---~~~rTVlvIAHRLSTV 666 (716)
T KOG0058|consen 644 QEALDRL---MQGRTVLVIAHRLSTV 666 (716)
T ss_pred HHHHHHh---hcCCeEEEEehhhhHh
Confidence 3333332 3367899998887543
No 380
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.81 E-value=7.8e-09 Score=108.53 Aligned_cols=150 Identities=15% Similarity=0.239 Sum_probs=96.0
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh---------cCc-------cCCC--c---cccCceEEEEcccchhhhccHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL---------EGV-------DIET--P---DRRRKMMIACTQPRRVAAMSVSRR 135 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll---------~~~-------~~~~--~---~~~~~~~i~~t~p~~~~~~~v~~~ 135 (727)
.+..|+.++|+|+|||||||++..+.= +.. ++.. . ...+.+.++++++.... .++.++
T Consensus 43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 121 (268)
T PRK14248 43 DIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFP-KSIYNN 121 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCc-ccHHHH
Confidence 357999999999999999999875431 111 1100 0 01224566676665443 366666
Q ss_pred HHHhccc--------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhh
Q 004850 136 VAEEMDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (727)
Q Consensus 136 v~~~~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~ 199 (727)
+...... .....+|..... ....+..+..+|+|+++++.++++++.+++++|+|| +++|...
T Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~ 199 (268)
T PRK14248 122 ITHALKYAGERRKSVLDEIVEESLTKAALWDEV--KDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPIS 199 (268)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch--HHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHH
Confidence 6432110 000011110000 011245667899999999999999999999999999 7777788
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHH
Q 004850 200 TDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQ 232 (727)
Q Consensus 200 ~d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~ 232 (727)
...+..+++++.+ +..+|++||.++ ...++
T Consensus 200 ~~~l~~~l~~~~~---~~tiii~tH~~~~~~~~~ 230 (268)
T PRK14248 200 NAKIEELITELKE---EYSIIIVTHNMQQALRVS 230 (268)
T ss_pred HHHHHHHHHHHhc---CCEEEEEEeCHHHHHHhC
Confidence 8888888888743 468999999985 34444
No 381
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.81 E-value=1.9e-08 Score=105.17 Aligned_cols=153 Identities=16% Similarity=0.154 Sum_probs=91.5
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCc-cCCCcc-ccCc-eEEEEcccchhhhccHHHHHHHhc---ccccc---ce
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGV-DIETPD-RRRK-MMIACTQPRRVAAMSVSRRVAEEM---DVTIG---EE 147 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~-~~~~~~-~~~~-~~i~~t~p~~~~~~~v~~~v~~~~---~~~~~---~~ 147 (727)
.+..|+.++|+|+|||||||++..+. +. ...... ...+ ...+...+......++.+++.... +.... ..
T Consensus 46 ~i~~Ge~~~liG~NGsGKSTLlk~L~--Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 123 (264)
T PRK13546 46 KAYEGDVIGLVGINGSGKSTLSNIIG--GSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAM 123 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHh--CCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHH
Confidence 46799999999999999999988653 22 111100 0001 112222222223345665553211 11000 00
Q ss_pred eceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcC
Q 004850 148 VGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSA 224 (727)
Q Consensus 148 vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SA 224 (727)
+......... ...+..+..+|+|+++++.++++++.+++++|||| .++|......++..+.++.. .+..+|+.||
T Consensus 124 ~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~--~g~tiIiisH 201 (264)
T PRK13546 124 TPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE--QNKTIFFVSH 201 (264)
T ss_pred HHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH--CCCEEEEEcC
Confidence 0000000000 11245667899999999999999999999999999 66666667778888888743 2789999999
Q ss_pred cccH-HHHHh
Q 004850 225 TLEA-EKFQG 233 (727)
Q Consensus 225 Tl~~-~~~~~ 233 (727)
.++. ..+++
T Consensus 202 ~~~~i~~~~d 211 (264)
T PRK13546 202 NLGQVRQFCT 211 (264)
T ss_pred CHHHHHHHcC
Confidence 9753 44444
No 382
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.81 E-value=1.5e-08 Score=105.29 Aligned_cols=144 Identities=19% Similarity=0.298 Sum_probs=94.5
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh----------cC------ccCCCc-----cccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|+.++|+|+|||||||++..+.= .+ .++... ...+.+.++++++.... .++.+++
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl 106 (252)
T PRK14255 28 FNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENV 106 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHH
Confidence 57899999999999999999876531 11 011000 01234566777665554 5777666
Q ss_pred HHhc---ccc-----------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 137 AEEM---DVT-----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 137 ~~~~---~~~-----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
.... +.. ....+|..... ....+..+..+|+|+++++.++++++.+++++|+|| +++|....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i--~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~ 184 (252)
T PRK14255 107 IYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV--KDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISS 184 (252)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCccch--hhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 4321 100 00111110000 011245667899999999999999999999999999 77777778
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
..+..+++++.+ +..+|++||.++
T Consensus 185 ~~l~~~l~~~~~---~~tii~vsH~~~ 208 (252)
T PRK14255 185 TQIENMLLELRD---QYTIILVTHSMH 208 (252)
T ss_pred HHHHHHHHHHHh---CCEEEEEECCHH
Confidence 888888888743 368999999985
No 383
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.81 E-value=1.5e-08 Score=103.38 Aligned_cols=148 Identities=16% Similarity=0.113 Sum_probs=89.4
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCcc-ccCceEEE-Ec-ccchhhhccHHHHHHHhc---cc--------
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPD-RRRKMMIA-CT-QPRRVAAMSVSRRVAEEM---DV-------- 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~-~~~~~~i~-~t-~p~~~~~~~v~~~v~~~~---~~-------- 142 (727)
.+..|+.++|+|+|||||||++..+.=... ..... ...+..+. .. ........++.+++.... +.
T Consensus 44 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 122 (224)
T cd03220 44 EVPRGERIGLIGRNGAGKSTLLRLLAGIYP-PDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEK 122 (224)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHH
Confidence 467999999999999999999885431110 11100 00000000 00 011111234555443211 00
Q ss_pred --cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCE
Q 004850 143 --TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLK 218 (727)
Q Consensus 143 --~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~ 218 (727)
.....+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|......+.+.++++.+. +..
T Consensus 123 ~~~~l~~~~l~------~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~--~~t 194 (224)
T cd03220 123 IDEIIEFSELG------DFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ--GKT 194 (224)
T ss_pred HHHHHHHcCCh------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCE
Confidence 001111211 11245667899999999999999999999999999 677777777788888887543 678
Q ss_pred EEEEcCcccH-HHHHh
Q 004850 219 LVVMSATLEA-EKFQG 233 (727)
Q Consensus 219 vil~SATl~~-~~~~~ 233 (727)
+|+.||..+. ..+++
T Consensus 195 iii~sH~~~~~~~~~d 210 (224)
T cd03220 195 VILVSHDPSSIKRLCD 210 (224)
T ss_pred EEEEeCCHHHHHHhCC
Confidence 9999999853 34443
No 384
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.81 E-value=1.3e-08 Score=102.34 Aligned_cols=148 Identities=12% Similarity=0.151 Sum_probs=88.4
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCcc--ccCceEEEEcccchhhhccHHHHHHHhccc------ccccee
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPD--RRRKMMIACTQPRRVAAMSVSRRVAEEMDV------TIGEEV 148 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~--~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~------~~~~~v 148 (727)
.+..|+.++|.|+|||||||++..+.=... ..... ....+.+++++|... ..++.+++...... .....+
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~-~~~G~i~~~g~i~~~~q~~~l~-~~t~~enl~~~~~~~~~~~~~~~~~~ 104 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGELE-KLSGSVSVPGSIAYVSQEPWIQ-NGTIRENILFGKPFDEERYEKVIKAC 104 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCcCC-CCCCeEEEcCEEEEEecCchhc-cCcHHHHhccCCCcCHHHHHHHHHHc
Confidence 367999999999999999999886431111 11100 000255667776544 45666666432110 000011
Q ss_pred ceeeeeccc-----cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH-HHHHHHHhCCCCEEE
Q 004850 149 GYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG-LLKEVLKNRPDLKLV 220 (727)
Q Consensus 149 g~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~-ll~~l~~~~~~~~vi 220 (727)
+........ .........+|+|+++++.++++++.+++++++|| ++++....+.++. +++...+. +..+|
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~--~~tvi 182 (204)
T cd03250 105 ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN--NKTRI 182 (204)
T ss_pred CcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC--CCEEE
Confidence 110000000 01123456799999999999999999999999999 5655555555555 34443322 67899
Q ss_pred EEcCcccH
Q 004850 221 VMSATLEA 228 (727)
Q Consensus 221 l~SATl~~ 228 (727)
++||..+.
T Consensus 183 ~~sh~~~~ 190 (204)
T cd03250 183 LVTHQLQL 190 (204)
T ss_pred EEeCCHHH
Confidence 99999753
No 385
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.81 E-value=5.8e-09 Score=109.95 Aligned_cols=152 Identities=26% Similarity=0.365 Sum_probs=103.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhh----------HHHhcCccCCCc------cccCceEEEEcccch--hhhccHHHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIP----------QFVLEGVDIETP------DRRRKMMIACTQPRR--VAAMSVSRRVAE 138 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~----------~~ll~~~~~~~~------~~~~~~~i~~t~p~~--~~~~~v~~~v~~ 138 (727)
.+..|+.++++|++||||||+-. .+.+.+.++... ..++.+.++++.|-. .+-+++.+-+.+
T Consensus 309 ~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~E 388 (534)
T COG4172 309 TLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEE 388 (534)
T ss_pred EecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhh
Confidence 36789999999999999999643 222334333221 123456788888853 345677776654
Q ss_pred hccc---------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeecc--CcChhhHH
Q 004850 139 EMDV---------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEA--HERTLATD 201 (727)
Q Consensus 139 ~~~~---------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEa--her~~~~d 201 (727)
.+.+ .....||.. -...+..+...|+|+.+|+.+++++..+|++|++||. .+|.--..
T Consensus 389 GL~vh~~~ls~~eR~~rv~~aL~EVGLD-----p~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQa 463 (534)
T COG4172 389 GLRVHEPKLSAAERDQRVIEALEEVGLD-----PATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQA 463 (534)
T ss_pred hhhhcCCCCCHHHHHHHHHHHHHHcCCC-----hhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHH
Confidence 3311 122334432 1223567788999999999999999999999999993 22223334
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHhh
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~~ 234 (727)
-++++++++.+++ ++.-+++||++.+ ..++++
T Consensus 464 Qvv~LLr~LQ~k~-~LsYLFISHDL~VvrAl~~~ 496 (534)
T COG4172 464 QVLDLLRDLQQKH-GLSYLFISHDLAVVRALCHR 496 (534)
T ss_pred HHHHHHHHHHHHh-CCeEEEEeccHHHHHHhhce
Confidence 5889999998877 9999999999974 445544
No 386
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.81 E-value=1.5e-08 Score=105.94 Aligned_cols=150 Identities=21% Similarity=0.326 Sum_probs=96.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh----------cCc------cCCCc-----cccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL----------EGV------DIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~~------~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|+.++|+|+|||||||++..+.= .+. ++... .....+.++++++.... .++.+++
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl 108 (259)
T PRK14260 30 IYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENV 108 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHH
Confidence 56899999999999999999875531 110 01000 01124566777665554 6777776
Q ss_pred HHhccc--------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 137 AEEMDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 137 ~~~~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
...... .....+|...... ...+..+..+|+|+.+++.++++++.+++++|+|| ++.|....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 186 (259)
T PRK14260 109 AYGVRISAKLPQADLDEIVESALKGAALWQEVK--DKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIAT 186 (259)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh--hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 432100 0011112100000 12345667899999999999999999999999999 67777777
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
..+..+++++.+ +..+|++||.++. ..+++
T Consensus 187 ~~l~~~l~~~~~---~~tiii~tH~~~~i~~~~d 217 (259)
T PRK14260 187 MKVEELIHSLRS---ELTIAIVTHNMQQATRVSD 217 (259)
T ss_pred HHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcC
Confidence 778888888642 4789999998853 44443
No 387
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.81 E-value=7.3e-09 Score=109.71 Aligned_cols=151 Identities=16% Similarity=0.187 Sum_probs=96.3
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh---------cCc-------cCCCc-----cccCceEEEEcccchhhhccHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL---------EGV-------DIETP-----DRRRKMMIACTQPRRVAAMSVSRR 135 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll---------~~~-------~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~ 135 (727)
.+..|+.++|+|+|||||||++..+.- +.. ++... ...+.+.++++.+.... .++.++
T Consensus 61 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en 139 (286)
T PRK14275 61 DILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFP-KSIFDN 139 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCc-cCHHHH
Confidence 467899999999999999999875431 111 11000 01224556666665443 377776
Q ss_pred HHHhcc---c-----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhh
Q 004850 136 VAEEMD---V-----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (727)
Q Consensus 136 v~~~~~---~-----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~ 199 (727)
+..... . .....+|..... ....+..+..+|+|+++++.++++++.+++++|+|| +++|...
T Consensus 140 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~ 217 (286)
T PRK14275 140 IAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV--SDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKA 217 (286)
T ss_pred HHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch--hhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 653211 0 000111110000 012245677899999999999999999999999999 6777777
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 200 ~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
...+..+++++.. +..+|++||.++. ..+++
T Consensus 218 ~~~l~~~L~~~~~---~~tvIivsH~~~~~~~~~d 249 (286)
T PRK14275 218 TAKIEDLIQELRG---SYTIMIVTHNMQQASRVSD 249 (286)
T ss_pred HHHHHHHHHHHhc---CCeEEEEeCCHHHHHHhCC
Confidence 7778888887642 4689999998753 34443
No 388
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.81 E-value=5.8e-09 Score=96.73 Aligned_cols=149 Identities=21% Similarity=0.271 Sum_probs=97.3
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-hcC------------ccCCC-------ccccCceEEEEcccchhhhccHHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-LEG------------VDIET-------PDRRRKMMIACTQPRRVAAMSVSRRVA 137 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-l~~------------~~~~~-------~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (727)
..+|+.+++.||+|+|||+++...- ++- .++.. ...++.++++++|-...+-++|.+++.
T Consensus 25 ~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enli 104 (242)
T COG4161 25 CPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLI 104 (242)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHH
Confidence 4689999999999999999987322 211 11111 011234567777776666777777764
Q ss_pred Hhccccccc--------eeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHH
Q 004850 138 EEMDVTIGE--------EVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (727)
Q Consensus 138 ~~~~~~~~~--------~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll 207 (727)
+......|- ....-.+..-....+..+..+|+|+.+|+.++++++.+|.++++|| |.+++.-+.-+.+++
T Consensus 105 eap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~ii 184 (242)
T COG4161 105 EAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184 (242)
T ss_pred hhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHH
Confidence 321100000 0000000000112345667899999999999999999999999999 667777777788888
Q ss_pred HHHHHhCCCCEEEEEcCcccH
Q 004850 208 KEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 208 ~~l~~~~~~~~vil~SATl~~ 228 (727)
+++... +++-++++|-.++
T Consensus 185 kel~~t--gitqvivthev~v 203 (242)
T COG4161 185 KELAET--GITQVIVTHEVEV 203 (242)
T ss_pred HHHHhc--CceEEEEEeehhH
Confidence 888765 7888888888875
No 389
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.81 E-value=1.3e-08 Score=107.69 Aligned_cols=151 Identities=19% Similarity=0.277 Sum_probs=96.1
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh----------cC------ccCCC-----ccccCceEEEEcccchhhhccHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRR 135 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (727)
.+..|+.++|+|+|||||||++..+.- .+ .++.. ....+.+.++++.+..+. .++.++
T Consensus 61 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en 139 (285)
T PRK14254 61 DIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFP-KSIYDN 139 (285)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCc-CCHHHH
Confidence 367899999999999999999875431 11 11100 011224556676665444 366666
Q ss_pred HHHhccc------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHH
Q 004850 136 VAEEMDV------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (727)
Q Consensus 136 v~~~~~~------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (727)
+...... .....+|...... ...+..+..+|+|+++|+.++++++.++++||||| +++|.....
T Consensus 140 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~--~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~ 217 (285)
T PRK14254 140 VAYGLKIQGYDGDIDERVEESLRRAALWDEVK--DQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATS 217 (285)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH--HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHH
Confidence 6432110 0011111100000 11245667899999999999999999999999999 777777777
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
.+..+++++.+ +..+|++||.++. ..+++
T Consensus 218 ~l~~~L~~~~~---~~tiii~tH~~~~i~~~~d 247 (285)
T PRK14254 218 KIEDLIEELAE---EYTVVIVTHNMQQAARISD 247 (285)
T ss_pred HHHHHHHHHhc---CCEEEEEeCCHHHHHhhcC
Confidence 88888888753 3689999998853 44443
No 390
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.80 E-value=1.2e-08 Score=118.32 Aligned_cols=150 Identities=18% Similarity=0.172 Sum_probs=95.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCc----cccCceEEEEcccchhhhccHHHHHHHhccc----------
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETP----DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV---------- 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~---------- 142 (727)
.+..|+.++|+|+|||||||++..+.=.-. .... .....+.++++.|......++.+++......
T Consensus 29 ~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~-p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 107 (556)
T PRK11819 29 SFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-EFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNE 107 (556)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHH
Confidence 467999999999999999999885531110 1110 1123456777777555556777666421100
Q ss_pred ---cccc--------------------eec-eee--------eeccccccCccccccChHHHHHHHhccccccCCeeEEe
Q 004850 143 ---TIGE--------------------EVG-YSI--------RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVL 190 (727)
Q Consensus 143 ---~~~~--------------------~vg-~~~--------~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIl 190 (727)
.... .++ +.. ..-+....+..+..+|+|+++|+.++++++.+++++||
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLL 187 (556)
T PRK11819 108 IYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLL 187 (556)
T ss_pred HHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEE
Confidence 0000 000 000 00001112456778999999999999999999999999
Q ss_pred ec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHH
Q 004850 191 DE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQ 232 (727)
Q Consensus 191 DE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~ 232 (727)
|| +|+|......+.++++++ ...+|++||.++ ...++
T Consensus 188 DEPt~~LD~~~~~~l~~~L~~~-----~~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 188 DEPTNHLDAESVAWLEQFLHDY-----PGTVVAVTHDRYFLDNVA 227 (556)
T ss_pred cCCCCcCChHHHHHHHHHHHhC-----CCeEEEEeCCHHHHHhhc
Confidence 99 788877777777777764 248999999985 34444
No 391
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.80 E-value=3.1e-09 Score=108.16 Aligned_cols=147 Identities=23% Similarity=0.315 Sum_probs=90.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh-----------cCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhccc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (727)
+..|+.++|+|+|||||||++..+.= ++.++.. ....+.+.++++.+... ..++.+++......
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~-~~tv~enl~~~~~~~ 105 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLF-SGTIRSNLDPFGEYS 105 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccc-cchHHHHhCcCCCCC
Confidence 57899999999999999999875431 1111100 01123455666665533 34666555311000
Q ss_pred -----cccceeceeeeec----cc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 143 -----TIGEEVGYSIRFE----DC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 143 -----~~~~~vg~~~~~~----~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
.....+|...... .. ......+..+|+|+++++.++++++.+++++|+|| ++++....+.+.++++++
T Consensus 106 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 185 (221)
T cd03244 106 DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREA 185 (221)
T ss_pred HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 0001111110000 00 01123566899999999999999999999999999 677777777788888876
Q ss_pred HHhCCCCEEEEEcCcccH
Q 004850 211 LKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~~ 228 (727)
.+ +..+|+.||..+.
T Consensus 186 ~~---~~tii~~sh~~~~ 200 (221)
T cd03244 186 FK---DCTVLTIAHRLDT 200 (221)
T ss_pred cC---CCEEEEEeCCHHH
Confidence 32 4789999998753
No 392
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.80 E-value=1.8e-09 Score=103.59 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=59.3
Q ss_pred CccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHhhh
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGYF 235 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~~f 235 (727)
+..+..+|+|++||..++..+.++.++++||| -.+++...-.++.+++++.... +.+++++=|+++ +..++++.
T Consensus 130 dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el-~KtiviVlHDINfAS~YsD~I 206 (252)
T COG4604 130 DRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL-GKTIVVVLHDINFASCYSDHI 206 (252)
T ss_pred HHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHh-CCeEEEEEecccHHHhhhhhe
Confidence 44566799999999999999999999999999 4445555556788888887776 788999999997 45666653
No 393
>PRK13409 putative ATPase RIL; Provisional
Probab=98.80 E-value=6.3e-09 Score=120.50 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=60.3
Q ss_pred cCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
.+..+..+|+|+++++.++.+++.++++++||| +++|......+..+++++.+ +..+|++||.++. ..+++
T Consensus 206 ~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~---g~tvIivsHd~~~l~~~~D 279 (590)
T PRK13409 206 LDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE---GKYVLVVEHDLAVLDYLAD 279 (590)
T ss_pred hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCC
Confidence 356777899999999999999999999999999 88888888889999988753 6789999999863 44443
No 394
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.79 E-value=5.2e-09 Score=122.40 Aligned_cols=148 Identities=23% Similarity=0.246 Sum_probs=92.3
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (727)
.+..|+.++|+|++||||||++.... +++.++.. ....+.+.+++++|..+. -++.+++.-...
T Consensus 363 ~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~-~Ti~~NI~~~~~~ 441 (592)
T PRK10790 363 SVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLA-DTFLANVTLGRDI 441 (592)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcccc-chHHHHHHhCCCC
Confidence 46799999999999999999987432 23322221 111234566777765544 477777643211
Q ss_pred -----ccccceeceeeeecccc-ccCcc----ccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 142 -----VTIGEEVGYSIRFEDCS-SARTV----LKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 142 -----~~~~~~vg~~~~~~~~~-~~~~~----i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
......+|......... ..++. -.-+|+|++||..++++++.+++++|+|| ++.|......+.+.+++
T Consensus 442 ~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~ 521 (592)
T PRK10790 442 SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAA 521 (592)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 11122222111111110 01121 13599999999999999999999999999 56665555556666655
Q ss_pred HHHhCCCCEEEEEcCcccH
Q 004850 210 VLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~ 228 (727)
+ .++.++|++||.++.
T Consensus 522 ~---~~~~tvIivtHr~~~ 537 (592)
T PRK10790 522 V---REHTTLVVIAHRLST 537 (592)
T ss_pred H---hCCCEEEEEecchHH
Confidence 4 236899999999854
No 395
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=6.9e-09 Score=107.85 Aligned_cols=150 Identities=18% Similarity=0.249 Sum_probs=96.0
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhc----------Cc------cCCCc-----cccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLE----------GV------DIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~~------~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|+.++|+|+|||||||++..+.=. +. ++... ...+.+.++++.+..+. .++.+++
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 105 (251)
T PRK14249 27 FPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFP-KSIFDNV 105 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCc-CcHHHHH
Confidence 578999999999999999998754211 10 01000 11234566676665443 4676666
Q ss_pred HHhc---cccc-----------cceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 137 AEEM---DVTI-----------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 137 ~~~~---~~~~-----------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
.... +... ...+|..... ....+..+..+|+|+++++.++++++.+++++|+|| +++|....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 183 (251)
T PRK14249 106 AFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV--KDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVST 183 (251)
T ss_pred hhHHHhcCCChhhHHHHHHHHHHHHhCCchhh--hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 4221 1000 0001110000 011345667899999999999999999999999999 77777778
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
..+..+++++. . +..+|++||.++. ..+++
T Consensus 184 ~~l~~~l~~~~-~--~~tilivsh~~~~~~~~~d 214 (251)
T PRK14249 184 MRIEELMQELK-Q--NYTIAIVTHNMQQAARASD 214 (251)
T ss_pred HHHHHHHHHHh-c--CCEEEEEeCCHHHHHhhCC
Confidence 88888888873 2 5799999998853 44443
No 396
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.79 E-value=7.2e-09 Score=131.96 Aligned_cols=148 Identities=19% Similarity=0.302 Sum_probs=104.2
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc--cccCceEEEEcccchhhhccHHHHHHHhc---c
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP--DRRRKMMIACTQPRRVAAMSVSRRVAEEM---D 141 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~ 141 (727)
+.+|++++++|+|||||||++..+. +++.++... ..++.++++++++.....+++.+.+.... +
T Consensus 953 I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg 1032 (2272)
T TIGR01257 953 FYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG 1032 (2272)
T ss_pred EcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC
Confidence 6789999999999999999987432 222222110 11234667787776666678888774321 1
Q ss_pred cc----------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 142 VT----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 142 ~~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
.. ....+|.. ...+..+..+|+|+++|+.++.+++.++++|+||| +++|......+.+++++
T Consensus 1033 ~~~~~~~~~v~~lL~~vgL~------~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~ 1106 (2272)
T TIGR01257 1033 RSWEEAQLEMEAMLEDTGLH------HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLK 1106 (2272)
T ss_pred CCHHHHHHHHHHHHHHcCCc------hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 10 11112211 12356778899999999999999999999999999 78888888889999998
Q ss_pred HHHhCCCCEEEEEcCcccH-HHHHhh
Q 004850 210 VLKNRPDLKLVVMSATLEA-EKFQGY 234 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~-~~~~~~ 234 (727)
+ + .+..+|+.||.++. +.+++.
T Consensus 1107 l-~--~g~TIIltTHdmdea~~laDr 1129 (2272)
T TIGR01257 1107 Y-R--SGRTIIMSTHHMDEADLLGDR 1129 (2272)
T ss_pred H-h--CCCEEEEEECCHHHHHHhCCE
Confidence 7 3 27899999999963 455543
No 397
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=1e-08 Score=106.48 Aligned_cols=151 Identities=23% Similarity=0.293 Sum_probs=96.1
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh----------cC------ccCCC----ccccCceEEEEcccchhhhccHHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
.+..|++++|+|+|||||||++..+.- .+ .++.. ....+.+.++++++.... .++.+++
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l 103 (249)
T PRK14253 25 PIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENV 103 (249)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHH
Confidence 357899999999999999999875421 11 11100 011224566777766554 6777766
Q ss_pred HHhccc-cc-------------cceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 137 AEEMDV-TI-------------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 137 ~~~~~~-~~-------------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
...... .. ...+|..... ....+..+..+|+|+++++.++++++.+++++|+|| +++|....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 181 (249)
T PRK14253 104 AYGLRAQGIKDKKVLDEVVERSLRGAALWDEV--KDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIAT 181 (249)
T ss_pred HhHHHhcCCCchHHHHHHHHHHHHHcCCchhh--hHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHH
Confidence 432110 00 0011110000 011244566799999999999999999999999999 67777777
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
..+..+++++.+ +..+|++||.++. ..+++
T Consensus 182 ~~l~~~l~~~~~---~~tii~~sh~~~~~~~~~d 212 (249)
T PRK14253 182 HKIEELMEELKK---NYTIVIVTHSMQQARRISD 212 (249)
T ss_pred HHHHHHHHHHhc---CCeEEEEecCHHHHHHhCC
Confidence 778888888743 4689999998753 44443
No 398
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.79 E-value=1.2e-08 Score=107.17 Aligned_cols=144 Identities=19% Similarity=0.245 Sum_probs=93.1
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh--c-------Cc-------cCCC-----ccccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL--E-------GV-------DIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll--~-------~~-------~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|+.++|+|+|||||||++..+.= . .. ++.. ....+.+.++++.+.... .++.+++
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 120 (267)
T PRK14235 42 IPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFP-KSIYENV 120 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCC-CcHHHHH
Confidence 57899999999999999999885431 1 11 1100 001223556676665444 3777766
Q ss_pred HHhc---cc------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhh
Q 004850 137 AEEM---DV------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (727)
Q Consensus 137 ~~~~---~~------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~ 199 (727)
.... +. .....+|..... ....+..+..+|+|+++|+.++++++.+++++|||| +++|...
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 198 (267)
T PRK14235 121 AYGPRIHGLARSKAELDEIVETSLRKAGLWEEV--KDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIA 198 (267)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHcCCchhh--hHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHH
Confidence 4221 00 001111110000 001234567899999999999999999999999999 7777777
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 200 TDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 200 ~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
...+..+++++.. +..+|+.||.++
T Consensus 199 ~~~l~~~L~~l~~---~~tiiivtH~~~ 223 (267)
T PRK14235 199 TAKVEELIDELRQ---NYTIVIVTHSMQ 223 (267)
T ss_pred HHHHHHHHHHHhc---CCeEEEEEcCHH
Confidence 7788888888742 468999999875
No 399
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.79 E-value=2.8e-09 Score=97.80 Aligned_cols=139 Identities=21% Similarity=0.329 Sum_probs=90.4
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH--------------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV--------------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l--------------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
.|.+|+++.+.||+||||||++.-++ +++..+.- +...+.++|.++.+..+.-.+|.+++.....
T Consensus 24 Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp 103 (213)
T COG4136 24 TIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALP 103 (213)
T ss_pred EecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecC
Confidence 46789999999999999999986322 12211111 2334567899999998888888877643221
Q ss_pred ccc------------cceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccC------cChhhHHHH
Q 004850 142 VTI------------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAH------ERTLATDVL 203 (727)
Q Consensus 142 ~~~------------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEah------er~~~~d~l 203 (727)
..+ .+.+|.. ..-...+..+|+|+.-|+.+-+.++..|+.+++||.- +|....+..
T Consensus 104 ~~~KG~aRr~~a~aAL~~~gL~------g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wV 177 (213)
T COG4136 104 ATLKGNARRNAANAALERSGLD------GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWV 177 (213)
T ss_pred cccccHHHHhhHHHHHHHhccc------hhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHH
Confidence 111 1122211 0113455679999999999999999999999999932 222222333
Q ss_pred HHHHHHHHHhCCCCEEEEEcCcc
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATL 226 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl 226 (727)
+..++. -++.+++++|+.
T Consensus 178 Fs~~r~-----agiPtv~VTHD~ 195 (213)
T COG4136 178 FSEVRA-----AGIPTVQVTHDL 195 (213)
T ss_pred HHHHHh-----cCCCeEEEeccc
Confidence 333222 278899999987
No 400
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.78 E-value=1.6e-08 Score=105.77 Aligned_cols=150 Identities=20% Similarity=0.264 Sum_probs=95.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH--h--------cC------ccCCC-----ccccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV--L--------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l--l--------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|+.++|+|+|||||||++..+. + .+ .++.. ....+.+.++++.+..+ ..++.+++
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl 109 (261)
T PRK14263 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNV 109 (261)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHH
Confidence 5789999999999999999987542 1 11 11100 00122355666666544 46777766
Q ss_pred HHhcc------------ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHH
Q 004850 137 AEEMD------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (727)
Q Consensus 137 ~~~~~------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (727)
..... ......+|...... ...+..+..+|+|+.++..++++++.+++++|+|| +++|......
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~--~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~ 187 (261)
T PRK14263 110 AFGLRLNRYKGDLGDRVKHALQGAALWDEVK--DKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRR 187 (261)
T ss_pred HHHHhhcCchHHHHHHHHHHHHHcCCchhhh--hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHH
Confidence 43210 01111122110000 01234556799999999999999999999999999 6777777788
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 203 LFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 203 ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
++.+++++. . +..+|++||.++ ...+++
T Consensus 188 l~~~l~~~~-~--~~tii~isH~~~~i~~~~d 216 (261)
T PRK14263 188 VEELMVELK-K--DYTIALVTHNMQQAIRVAD 216 (261)
T ss_pred HHHHHHHHh-c--CCeEEEEeCCHHHHHHhCC
Confidence 888888873 2 578999999886 344443
No 401
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.78 E-value=2.3e-08 Score=103.97 Aligned_cols=151 Identities=19% Similarity=0.289 Sum_probs=97.2
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhc----------C------ccCCC-----ccccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|+.++|+|+|||||||++..+.=. + .++.. ....+.+.++++.+..+...++.+++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl 106 (252)
T PRK14256 27 FPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNV 106 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHH
Confidence 578999999999999999998754311 1 01110 01122456677776655556777776
Q ss_pred HHhccc--------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 137 AEEMDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 137 ~~~~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
...... .....+|..... ....+..+..+|+|+++++.++++++.+++++|+|| ..+|....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~ 184 (252)
T PRK14256 107 IAGYKLNGRVNRSEADEIVESSLKRVALWDEV--KDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPIST 184 (252)
T ss_pred HhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh--hHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 432110 000111110000 011234567899999999999999999999999999 66667777
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
..+..+++++.+ +.++|++||.++. ..+++
T Consensus 185 ~~l~~~l~~~~~---~~tiiivsH~~~~~~~~~d 215 (252)
T PRK14256 185 LKIEELIEELKE---KYTIIIVTHNMQQAARVSD 215 (252)
T ss_pred HHHHHHHHHHHh---CCcEEEEECCHHHHHhhCC
Confidence 788888888743 4689999998853 34444
No 402
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.77 E-value=6.4e-09 Score=123.71 Aligned_cols=146 Identities=18% Similarity=0.311 Sum_probs=89.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHH-----------HhcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (727)
.+..|+.++|+|++||||||++... .+++.++.. ...++.+.+++++|... .-++.+++.-...
T Consensus 475 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~gTI~eNi~~~~~~ 553 (686)
T TIGR03797 475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLM-SGSIFENIAGGAPL 553 (686)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccC-cccHHHHHhcCCCC
Confidence 3679999999999999999998743 233333222 11223456666666543 4567777643210
Q ss_pred -----ccccceeceeeeecccc-ccCccc----cccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 142 -----VTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 142 -----~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
......+|......... ..++.+ ..+|+|++||..++++++.+++++|||| ++.|......+.+.++.
T Consensus 554 ~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~ 633 (686)
T TIGR03797 554 TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER 633 (686)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 11112222111111100 012222 3589999999999999999999999999 56655555556655554
Q ss_pred HHHhCCCCEEEEEcCcccH
Q 004850 210 VLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~ 228 (727)
+ +.++|++||.++.
T Consensus 634 ~-----~~T~IiItHr~~~ 647 (686)
T TIGR03797 634 L-----KVTRIVIAHRLST 647 (686)
T ss_pred h-----CCeEEEEecChHH
Confidence 3 4689999998743
No 403
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.77 E-value=2.2e-08 Score=108.01 Aligned_cols=151 Identities=17% Similarity=0.256 Sum_probs=96.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhc----------C------ccCCC-----ccccCceEEEEcccchhhhccHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRR 135 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (727)
.|..|+.++|+|+|||||||++..+.=. | .++.. ....+.+.+++++|... ..++.++
T Consensus 104 ~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~-~~ti~eN 182 (329)
T PRK14257 104 DIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF-EMSIFDN 182 (329)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC-CCcHHHH
Confidence 3678999999999999999998754311 1 01100 01123566777777644 4677777
Q ss_pred HHHhccc------c--------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhh
Q 004850 136 VAEEMDV------T--------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (727)
Q Consensus 136 v~~~~~~------~--------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~ 199 (727)
+...... . ....++.....+ ...+.....+|+|+++|+.++++++.+++++++|| ++.|...
T Consensus 183 i~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~--~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~ 260 (329)
T PRK14257 183 VAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK--DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIA 260 (329)
T ss_pred HHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhh--hhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 7522100 0 001111100000 11245566899999999999999999999999999 5666666
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 200 ~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
...+...++.+.+ +.++|++||.++. ..+++
T Consensus 261 ~~~i~~~i~~l~~---~~Tii~iTH~l~~i~~~~D 292 (329)
T PRK14257 261 TAKIEELILELKK---KYSIIIVTHSMAQAQRISD 292 (329)
T ss_pred HHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCC
Confidence 6667777776643 5789999999863 44444
No 404
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.77 E-value=1.9e-08 Score=115.92 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=54.4
Q ss_pred ccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 162 TVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 162 ~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
..+..+|+|+++|+.++++++.++++++||| +|+|......+.+++++ . +..+|++||.++ ...+++
T Consensus 151 ~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~-~~tiiivsHd~~~~~~~~d 220 (530)
T PRK15064 151 GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----R-NSTMIIISHDRHFLNSVCT 220 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----C-CCeEEEEeCCHHHHHhhcc
Confidence 3567899999999999999999999999999 78877777777777653 2 678999999986 344443
No 405
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.77 E-value=8.1e-09 Score=119.47 Aligned_cols=149 Identities=20% Similarity=0.231 Sum_probs=92.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (727)
.+..|+.++|+|++||||||++.... +++.++.. ....+.+.+++++|.... .++.+++.....
T Consensus 340 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~ 418 (544)
T TIGR01842 340 RLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFP-GTVAENIARFGEN 418 (544)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCccccc-ccHHHHHhccCCC
Confidence 46799999999999999999987542 12211111 011234556666665443 477777752110
Q ss_pred ---ccc---cceeceeeeeccc-----cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 142 ---VTI---GEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 142 ---~~~---~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
..+ ...+|.....+.. .........+|+|+++|..++++++.+++++|+|| ++.|....+.+.+.+.
T Consensus 419 ~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~ 498 (544)
T TIGR01842 419 ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK 498 (544)
T ss_pred CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHH
Confidence 000 0111111000000 01122345699999999999999999999999999 5666666666777776
Q ss_pred HHHHhCCCCEEEEEcCcccH
Q 004850 209 EVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~~ 228 (727)
.+.. .+.++|++||..+.
T Consensus 499 ~~~~--~~~tvi~ith~~~~ 516 (544)
T TIGR01842 499 ALKA--RGITVVVITHRPSL 516 (544)
T ss_pred HHhh--CCCEEEEEeCCHHH
Confidence 6532 26789999999853
No 406
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.76 E-value=6.6e-09 Score=109.10 Aligned_cols=148 Identities=22% Similarity=0.303 Sum_probs=89.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc--
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (727)
.|..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.|..+. .++.+++.....
T Consensus 26 ~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~~~~ 104 (275)
T cd03289 26 SISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYGKWS 104 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccch-hhHHHHhhhccCCC
Confidence 46799999999999999999987432 12211111 011234667777765443 366666631100
Q ss_pred ----ccccceeceeeeecccc-ccCc----cccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 142 ----VTIGEEVGYSIRFEDCS-SART----VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 142 ----~~~~~~vg~~~~~~~~~-~~~~----~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
......+|......... ..++ .-..+|+|+++++.++++++.+++++|+|| ++.|......+...++++
T Consensus 105 ~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~ 184 (275)
T cd03289 105 DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQA 184 (275)
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 01112222210000000 0011 123499999999999999999999999999 566666566666666654
Q ss_pred HHhCCCCEEEEEcCcccH
Q 004850 211 LKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~~ 228 (727)
..+.++|++||.++.
T Consensus 185 ---~~~~tii~isH~~~~ 199 (275)
T cd03289 185 ---FADCTVILSEHRIEA 199 (275)
T ss_pred ---cCCCEEEEEECCHHH
Confidence 236899999999854
No 407
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.76 E-value=9.8e-09 Score=117.27 Aligned_cols=72 Identities=21% Similarity=0.268 Sum_probs=61.4
Q ss_pred cCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
.+..+..+|+|+++|+.++++++.+++++|||| +++|......+..+++++... +..+|++||.++ ...+++
T Consensus 385 ~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~--~~tvi~vsHd~~~~~~~~d 459 (491)
T PRK10982 385 HRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK--DKGIIIISSEMPELLGITD 459 (491)
T ss_pred cccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC--CCEEEEECCChHHHHhhCC
Confidence 356777899999999999999999999999999 888888888899999887654 789999999985 344443
No 408
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.76 E-value=1.8e-08 Score=116.67 Aligned_cols=145 Identities=18% Similarity=0.149 Sum_probs=93.4
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCc----cccCceEEEEcccchhhhccHHHHHHHhcc-----------
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETP----DRRRKMMIACTQPRRVAAMSVSRRVAEEMD----------- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~----------- 141 (727)
.+..|+.++|+|+|||||||++..+.=... .... .....+.++++.|......++.+++.....
T Consensus 27 ~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~-p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~ 105 (552)
T TIGR03719 27 SFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-EFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNE 105 (552)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHH
Confidence 468999999999999999999986541110 1110 012345677777655445566666542110
Q ss_pred ------cccc----------------ceec-ee--------eeeccccccCccccccChHHHHHHHhccccccCCeeEEe
Q 004850 142 ------VTIG----------------EEVG-YS--------IRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVL 190 (727)
Q Consensus 142 ------~~~~----------------~~vg-~~--------~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIl 190 (727)
.... ..+| +. ...-+....+..+..+|+|+++|+.++++++.+++++||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLL 185 (552)
T TIGR03719 106 ISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLL 185 (552)
T ss_pred HHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0000 0011 00 000001112456778999999999999999999999999
Q ss_pred ec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 191 DE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 191 DE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
|| +|+|......+.++++++ +..+|++||.++
T Consensus 186 DEPt~~LD~~~~~~l~~~L~~~-----~~tvIiisHd~~ 219 (552)
T TIGR03719 186 DEPTNHLDAESVAWLEQHLQEY-----PGTVVAVTHDRY 219 (552)
T ss_pred cCCCCCCChHHHHHHHHHHHhC-----CCeEEEEeCCHH
Confidence 99 788888888777777654 248999999885
No 409
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.75 E-value=1.6e-08 Score=97.29 Aligned_cols=119 Identities=25% Similarity=0.430 Sum_probs=78.1
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeeccc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC 157 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~ 157 (727)
+.+|+.++|+|+|||||||++..+. +. ... ..+- +..... ...... ...+ ...++|...
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~--g~-~~~---~~G~-i~~~~~-~~~~~~-~~~~--------~~~i~~~~q---- 80 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIA--GL-LKP---TSGE-ILIDGK-DIAKLP-LEEL--------RRRIGYVPQ---- 80 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh--CC-CCC---CccE-EEECCE-EcccCC-HHHH--------HhceEEEee----
Confidence 5689999999999999999987643 22 111 1121 111110 000000 0001 112333311
Q ss_pred cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 158 SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 158 ~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
+|.|+.++..++++++.+++++|+|| ++.|......+...++++... +.++++.||.++.
T Consensus 81 ---------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~--~~tii~~sh~~~~ 142 (157)
T cd00267 81 ---------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE--GRTVIIVTHDPEL 142 (157)
T ss_pred ---------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHH
Confidence 99999999999999999999999999 666666677788888776543 5789999999853
No 410
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.75 E-value=2.3e-08 Score=104.95 Aligned_cols=151 Identities=16% Similarity=0.291 Sum_probs=96.7
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh----------cC------ccCCC-----ccccCceEEEEcccchhhhccHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRR 135 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (727)
.+..|+.++|+|+|||||||++..+.= .| .++.. ....+.+.++++++.... .++.++
T Consensus 42 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 120 (267)
T PRK14237 42 QFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYEN 120 (267)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHH
Confidence 356899999999999999999875431 11 01100 001234566777665544 577777
Q ss_pred HHHhcc---cc-----------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhh
Q 004850 136 VAEEMD---VT-----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (727)
Q Consensus 136 v~~~~~---~~-----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~ 199 (727)
+..... .. ....+|...... ...+..+..+|+|+.+++.++++++.+++++|+|| +++|...
T Consensus 121 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~--~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~ 198 (267)
T PRK14237 121 ITFALERAGVKDKKVLDEIVETSLKQAALWDQVK--DDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPIS 198 (267)
T ss_pred HHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh--hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 753211 00 001111100000 11245667899999999999999999999999999 6777777
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 200 ~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
...+..+++++. . +..+|++||..+. ..+++
T Consensus 199 ~~~l~~~l~~~~-~--~~tiii~tH~~~~~~~~~d 230 (267)
T PRK14237 199 TMQLEETMFELK-K--NYTIIIVTHNMQQAARASD 230 (267)
T ss_pred HHHHHHHHHHHh-c--CCEEEEEecCHHHHHHhcC
Confidence 777888888873 2 5789999998753 34443
No 411
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.75 E-value=1.6e-08 Score=105.01 Aligned_cols=144 Identities=19% Similarity=0.292 Sum_probs=92.7
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH--h--------cCc------cCCCc-----cccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV--L--------EGV------DIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l--l--------~~~------~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|+.++|+|+|||||||++..+. . .|. ++... ...+.+.++++.+..+. .++.+++
T Consensus 28 i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~ni 106 (251)
T PRK14244 28 IYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFP-KSIYDNV 106 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccccc-CCHHHHH
Confidence 5789999999999999999988543 1 110 00000 01224556777665444 3666665
Q ss_pred HHhc---cc------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhh
Q 004850 137 AEEM---DV------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (727)
Q Consensus 137 ~~~~---~~------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~ 199 (727)
.... +. .....+|..... ....+..+..+|+|+++++.++++++.+++++|+|| +++|...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~ 184 (251)
T PRK14244 107 AYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL--GDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVA 184 (251)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh--hhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 4221 00 001111211000 001234566899999999999999999999999999 6777777
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 200 TDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 200 ~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
...+..+++++. . +..+|+.||.++
T Consensus 185 ~~~l~~~l~~~~-~--~~tiiiisH~~~ 209 (251)
T PRK14244 185 TNVIENLIQELK-K--NFTIIVVTHSMK 209 (251)
T ss_pred HHHHHHHHHHHh-c--CCeEEEEeCCHH
Confidence 777888888873 2 678999999885
No 412
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.75 E-value=3e-08 Score=103.05 Aligned_cols=145 Identities=19% Similarity=0.251 Sum_probs=95.5
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhc----------C------ccCCC-----ccccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|+.++|+|+|||||||++..+.=. + .++.. ......+.++++.+......++.+++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl 106 (252)
T PRK14272 27 VQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNV 106 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHH
Confidence 578999999999999999998754311 1 01100 00122455677776655556777777
Q ss_pred HHhccc---cc----cc-------eeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 137 AEEMDV---TI----GE-------EVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 137 ~~~~~~---~~----~~-------~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
...... .. .. .++..... ....+..+..+|+|+.+++.++++++.+++++|+|| +++|....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 184 (252)
T PRK14272 107 VAGLKLAGIRDRDHLMEVAERSLRGAALWDEV--KDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAST 184 (252)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh--hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 532110 00 00 01100000 011245677899999999999999999999999999 67777777
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
..+..+++++. . +..+|++||..+
T Consensus 185 ~~l~~~l~~~~-~--~~tiii~sH~~~ 208 (252)
T PRK14272 185 ARIEDLMTDLK-K--VTTIIIVTHNMH 208 (252)
T ss_pred HHHHHHHHHHh-c--CCeEEEEeCCHH
Confidence 78888888873 2 578999999885
No 413
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.75 E-value=6.1e-09 Score=121.61 Aligned_cols=148 Identities=20% Similarity=0.277 Sum_probs=91.4
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (727)
.+..|+.++|+|++||||||++..+. +++.++.. ....+.+.+++++|... .-++.+++.-...
T Consensus 365 ~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf-~~Ti~~Ni~~~~~~ 443 (582)
T PRK11176 365 KIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLF-NDTIANNIAYARTE 443 (582)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceee-cchHHHHHhcCCCC
Confidence 35789999999999999999987543 22222211 11123455666665544 3577777753211
Q ss_pred ----cc---ccceeceeeeecccc-ccCccc----cccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHH
Q 004850 142 ----VT---IGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (727)
Q Consensus 142 ----~~---~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll 207 (727)
.. ....+|.....+... ..++.+ ..+|+|++||..++++++.+++++|+|| +++|......+++.+
T Consensus 444 ~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l 523 (582)
T PRK11176 444 QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL 523 (582)
T ss_pred CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHH
Confidence 00 111122110001000 012222 3599999999999999999999999999 666666666666666
Q ss_pred HHHHHhCCCCEEEEEcCcccH
Q 004850 208 KEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 208 ~~l~~~~~~~~vil~SATl~~ 228 (727)
+++ ..+.++|++||..+.
T Consensus 524 ~~~---~~~~tvI~VtHr~~~ 541 (582)
T PRK11176 524 DEL---QKNRTSLVIAHRLST 541 (582)
T ss_pred HHH---hCCCEEEEEecchHH
Confidence 654 236899999999854
No 414
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.74 E-value=4.5e-09 Score=98.37 Aligned_cols=114 Identities=24% Similarity=0.362 Sum_probs=70.7
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcccc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (727)
+..|+.++|+|+|||||||++..+. +++.++.. ......+.++++.+......++.++........
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~ 87 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEE 87 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHH
T ss_pred EcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5689999999999999999987432 12221211 112234566777766666666655532222222
Q ss_pred ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeecc
Q 004850 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEA 193 (727)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEa 193 (727)
+...++... ......+.....+|+|+++++.++++++.+++++||||.
T Consensus 88 ~l~~l~~~~--~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEP 135 (137)
T PF00005_consen 88 VLKKLGLED--LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEP 135 (137)
T ss_dssp HHHHTTHGG--GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEEST
T ss_pred ccccccccc--ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 222222110 001112334478999999999999999999999999995
No 415
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.74 E-value=3.5e-08 Score=91.21 Aligned_cols=134 Identities=21% Similarity=0.338 Sum_probs=79.4
Q ss_pred hcCCEEEEEcCCCChhhch-hhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeec-c
Q 004850 79 KANQVIILVGETGSGKTTQ-IPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFE-D 156 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~-~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~-~ 156 (727)
.+|+..+|--.+|||||+. +|.++.+... ++..+++..|.|..+.++.+.+... . +.+....- .
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~-------~~~rvLvL~PTRvva~em~~aL~~~-~------~~~~t~~~~~ 67 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIK-------RRLRVLVLAPTRVVAEEMYEALKGL-P------VRFHTNARMR 67 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHTTTS-S------EEEESTTSS-
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHH-------ccCeEEEecccHHHHHHHHHHHhcC-C------cccCceeeec
Confidence 4688899999999999996 6666665541 1333455556665555555444221 1 11111110 1
Q ss_pred ccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 157 CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 157 ~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
....+..|.++|.+.+.+.+....-+.+++++|+||+|--.-..-...+.++.+... ...++|+||||-+
T Consensus 68 ~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~-g~~~~i~mTATPP 137 (148)
T PF07652_consen 68 THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES-GEAKVIFMTATPP 137 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT-TS-EEEEEESS-T
T ss_pred cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc-cCeeEEEEeCCCC
Confidence 123455677888888877776655589999999999996444444566777776554 3679999999974
No 416
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.74 E-value=1.8e-08 Score=118.57 Aligned_cols=147 Identities=17% Similarity=0.301 Sum_probs=100.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc--c-----ccCceEEEEcccchhhhccHHHHHHHh
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP--D-----RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~--~-----~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
+..|+.++++|+|||||||++..+. +++.++... . ..+.+.++++.+..+...++.+++...
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~ 110 (648)
T PRK10535 31 IYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVP 110 (648)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHH
Confidence 5799999999999999999987443 222222110 0 023566778777655556777666421
Q ss_pred c---cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHH
Q 004850 140 M---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (727)
Q Consensus 140 ~---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (727)
. +. .....+|.. ...+..+..+|+|+++++.++++++.+|+++|+|| .++|....+.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~lgl~------~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~ 184 (648)
T PRK10535 111 AVYAGLERKQRLLRAQELLQRLGLE------DRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVM 184 (648)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCh------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence 1 10 011112211 12355677899999999999999999999999999 677777788888
Q ss_pred HHHHHHHHhCCCCEEEEEcCcccHHHHH
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLEAEKFQ 232 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~~~~~~ 232 (727)
.+++++.+. +.++++.||..+....+
T Consensus 185 ~ll~~l~~~--g~tilivsH~~~~~~~~ 210 (648)
T PRK10535 185 AILHQLRDR--GHTVIIVTHDPQVAAQA 210 (648)
T ss_pred HHHHHHHhc--CCEEEEECCCHHHHHhC
Confidence 888887543 78999999998744333
No 417
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.74 E-value=1.7e-08 Score=105.38 Aligned_cols=150 Identities=17% Similarity=0.253 Sum_probs=95.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH--h--------cCc------cCCC-----ccccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV--L--------EGV------DIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l--l--------~~~------~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|+.++|+|+|||||||++..+. + .+. ++.. ....+.+.++++.+.... .++.+++
T Consensus 35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 113 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFP-QSIFDNV 113 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccc-cCHHHHH
Confidence 5789999999999999999987543 1 111 0100 001224556676665444 3777666
Q ss_pred HHhcccc--------------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 137 AEEMDVT--------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 137 ~~~~~~~--------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
....... ....+|..... ....+..+..+|+|+++++.++++++.+++++++|| +++|....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~ 191 (259)
T PRK14274 114 AYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV--KDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVST 191 (259)
T ss_pred HhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh--hhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 4221100 00111110000 011245667899999999999999999999999999 67777777
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
..+..+++++.. +..+|++||.++. ..+++
T Consensus 192 ~~l~~~l~~~~~---~~tiiivtH~~~~~~~~~d 222 (259)
T PRK14274 192 RKIEELILKLKE---KYTIVIVTHNMQQAARVSD 222 (259)
T ss_pred HHHHHHHHHHhc---CCEEEEEEcCHHHHHHhCC
Confidence 778888888742 5789999998853 44443
No 418
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.74 E-value=1e-08 Score=119.37 Aligned_cols=148 Identities=20% Similarity=0.291 Sum_probs=92.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (727)
.+..|+.++|+|+|||||||++.... +++.++.. ...++.+.+++++|.. ..-++.+++.-...
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-f~~ti~~Ni~~~~~~ 440 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL-FSATLRDNLLLAAPN 440 (574)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchh-hcccHHHHhhcCCCc
Confidence 46799999999999999999987432 22222211 1112345566666644 34578877743211
Q ss_pred ------ccccceeceeeeeccccccCc----cccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 142 ------VTIGEEVGYSIRFEDCSSART----VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 142 ------~~~~~~vg~~~~~~~~~~~~~----~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
......+|.....+.-...++ .-..+|+|+++|..++++++.+++++|+|| ++.|......+.+.+.+
T Consensus 441 ~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~ 520 (574)
T PRK11160 441 ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE 520 (574)
T ss_pred cCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 011122221111111001122 234699999999999999999999999999 66666666666666665
Q ss_pred HHHhCCCCEEEEEcCcccH
Q 004850 210 VLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~ 228 (727)
+ .++.++|++||..+.
T Consensus 521 ~---~~~~tviiitHr~~~ 536 (574)
T PRK11160 521 H---AQNKTVLMITHRLTG 536 (574)
T ss_pred H---cCCCEEEEEecChhH
Confidence 5 337899999998754
No 419
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.74 E-value=2.5e-08 Score=104.83 Aligned_cols=153 Identities=20% Similarity=0.289 Sum_probs=96.5
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh--c--------C------ccCCC-----ccccCceEEEEcccchhhhccHHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL--E--------G------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRR 135 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll--~--------~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (727)
.+..|+.++|+|+|||||||++..+.= . + .++.. ....+.+.++++.+..+. .++.++
T Consensus 46 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 124 (271)
T PRK14238 46 DIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDN 124 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcccc-ccHHHH
Confidence 367999999999999999999875431 1 1 00100 001224556676665444 477777
Q ss_pred HHHhc---ccc----ccceeceee-ee---ccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHH
Q 004850 136 VAEEM---DVT----IGEEVGYSI-RF---EDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (727)
Q Consensus 136 v~~~~---~~~----~~~~vg~~~-~~---~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (727)
+.... +.. ....+-... .+ +.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|.....
T Consensus 125 i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~ 204 (271)
T PRK14238 125 VTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTL 204 (271)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence 64221 100 000000000 00 000 11245667899999999999999999999999999 777777777
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
.+..+++++.+ +..+|++||.++. ..+++
T Consensus 205 ~l~~~l~~~~~---~~tiiivsH~~~~i~~~~d 234 (271)
T PRK14238 205 KVEELVQELKK---DYSIIIVTHNMQQAARISD 234 (271)
T ss_pred HHHHHHHHHHc---CCEEEEEEcCHHHHHHhCC
Confidence 88888888743 4789999998863 44444
No 420
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.74 E-value=2.9e-08 Score=103.16 Aligned_cols=150 Identities=19% Similarity=0.278 Sum_probs=96.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh----------cC------ccCCCc-----cccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|+.++|+|+|||||||++..+.= .+ .++... ...+.+.++++.+.... .++.+++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl 105 (251)
T PRK14270 27 IYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNV 105 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHH
Confidence 57899999999999999999875441 11 011000 01234567777765554 6777776
Q ss_pred HHhc---cc-----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 137 AEEM---DV-----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 137 ~~~~---~~-----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
.... +. .....+|..... ....+..+..+|+|+++++.++++++.+++++|+|| +++|....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 183 (251)
T PRK14270 106 AYGPRIHGIKDKKELDKIVEWALKKAALWDEV--KDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPIST 183 (251)
T ss_pred HhHHHhcCCCcHHHHHHHHHHHHHHcCCchhh--hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 4221 10 000111110000 011245667899999999999999999999999999 67777777
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
..+..+++++.+ +..+|++||.++. ..+++
T Consensus 184 ~~l~~~L~~~~~---~~tiiivsH~~~~~~~~~d 214 (251)
T PRK14270 184 LKIEDLMVELKK---EYTIVIVTHNMQQASRVSD 214 (251)
T ss_pred HHHHHHHHHHHh---CCeEEEEEcCHHHHHHhcC
Confidence 778888888743 3689999998853 44443
No 421
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.74 E-value=7.1e-09 Score=121.11 Aligned_cols=149 Identities=21% Similarity=0.250 Sum_probs=91.7
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (727)
.+..|+.++|+|++||||||++.... +++.++.. ....+.+.++++.|..+ .-++.+++.-...
T Consensus 357 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~~Ni~~~~~~ 435 (588)
T PRK13657 357 EAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLF-NRSIEDNIRVGRPD 435 (588)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccc-cccHHHHHhcCCCC
Confidence 46799999999999999999987543 22221111 11123456666666544 4577777753211
Q ss_pred ---c---cccceeceeeeecccc-ccCc----cccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 142 ---V---TIGEEVGYSIRFEDCS-SART----VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 142 ---~---~~~~~vg~~~~~~~~~-~~~~----~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
. .....+|......... ..++ .-..+|+|++||..++++++.+++++|||| +++|......+++.+.
T Consensus 436 ~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~ 515 (588)
T PRK13657 436 ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALD 515 (588)
T ss_pred CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 0 1111222111111100 0122 223599999999999999999999999999 5655555555555555
Q ss_pred HHHHhCCCCEEEEEcCcccHH
Q 004850 209 EVLKNRPDLKLVVMSATLEAE 229 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~~~ 229 (727)
.+ .++.++|++||..+..
T Consensus 516 ~~---~~~~tvIiitHr~~~~ 533 (588)
T PRK13657 516 EL---MKGRTTFIIAHRLSTV 533 (588)
T ss_pred HH---hcCCEEEEEEecHHHH
Confidence 43 3478999999998543
No 422
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.74 E-value=3.5e-08 Score=103.82 Aligned_cols=152 Identities=20% Similarity=0.292 Sum_probs=95.7
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH--h--------cC------ccCCC-----ccccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV--L--------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l--l--------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|+.++|+|+|||||||++..+. + .| .++.. ....+.+.++++.+.... .++.+++
T Consensus 48 i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl 126 (272)
T PRK14236 48 IPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFP-KSIYENV 126 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCc-ccHHHHH
Confidence 5689999999999999999987542 1 11 11110 011234556666655444 3777766
Q ss_pred HHhcccc---cc----ceeceeeeeccc-----cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHH
Q 004850 137 AEEMDVT---IG----EEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (727)
Q Consensus 137 ~~~~~~~---~~----~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (727)
....... .. ..+.......+. ...+..+..+|+|+++|+.++++++.+++++|+|| +++|....+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~ 206 (272)
T PRK14236 127 VYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLK 206 (272)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHH
Confidence 4321100 00 001000000000 11245567899999999999999999999999999 6777777788
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 203 LFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 203 ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+..+++++.+ +..+|+.||..+. ..+++
T Consensus 207 l~~~L~~~~~---~~tiiivtH~~~~~~~~~d 235 (272)
T PRK14236 207 IEELITELKS---KYTIVIVTHNMQQAARVSD 235 (272)
T ss_pred HHHHHHHHHh---CCeEEEEeCCHHHHHhhCC
Confidence 8888888743 4689999999853 44443
No 423
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.74 E-value=4.2e-08 Score=98.02 Aligned_cols=134 Identities=20% Similarity=0.246 Sum_probs=81.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH--hc------------------CccCCCccccCceEEEEcccchhhhccHHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV--LE------------------GVDIETPDRRRKMMIACTQPRRVAAMSVSRRVA 137 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l--l~------------------~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (727)
+..| .++|+|+|||||||++..+. +. +.+.........+.++++.|.........+++.
T Consensus 20 ~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~ 98 (197)
T cd03278 20 FPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVS 98 (197)
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHH
Confidence 4557 89999999999999886432 11 000000011224456677665431000011111
Q ss_pred HhccccccceeceeeeeccccccCccccccChHHHHHHHhccccc----cCCeeEEeec--cCcChhhHHHHHHHHHHHH
Q 004850 138 EEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLL----ERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (727)
Q Consensus 138 ~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll----~~~~~lIlDE--aher~~~~d~ll~ll~~l~ 211 (727)
+-.. . ....+..+..+|+|+++++.++..++ ..++++++|| ++.+......+..+++++.
T Consensus 99 ~~l~-----~---------~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~ 164 (197)
T cd03278 99 EIIE-----A---------PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFS 164 (197)
T ss_pred HHHh-----C---------CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 1110 0 01134556789999999999998764 5679999999 5666666777777777763
Q ss_pred HhCCCCEEEEEcCcccHH
Q 004850 212 KNRPDLKLVVMSATLEAE 229 (727)
Q Consensus 212 ~~~~~~~vil~SATl~~~ 229 (727)
+ +.++|++||.++..
T Consensus 165 ~---~~tiIiitH~~~~~ 179 (197)
T cd03278 165 K---ETQFIVITHRKGTM 179 (197)
T ss_pred c---CCEEEEEECCHHHH
Confidence 2 57899999998643
No 424
>PLN03211 ABC transporter G-25; Provisional
Probab=98.73 E-value=1.6e-08 Score=118.65 Aligned_cols=147 Identities=13% Similarity=0.144 Sum_probs=97.0
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhc-------------CccCCCccccCceEEEEcccchhhhccHHHHHHHhcccc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLE-------------GVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT- 143 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~-------------~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~- 143 (727)
+..|+.++|+|||||||||++..+.=. +.+.. ....+.+.++++++......++.+.+.-.....
T Consensus 91 i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~-~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~ 169 (659)
T PLN03211 91 ASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT-KQILKRTGFVTQDDILYPHLTVRETLVFCSLLRL 169 (659)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc-hhhccceEEECcccccCCcCCHHHHHHHHHHhCC
Confidence 679999999999999999998754311 11110 011223556666665555678877764221100
Q ss_pred ---------------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHH
Q 004850 144 ---------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (727)
Q Consensus 144 ---------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~l 206 (727)
+...+|..... +....+..+..+|+|+++|+.++..++.+++++++|| .++|......+.++
T Consensus 170 ~~~~~~~~~~~~v~~~l~~lgL~~~~-~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~ 248 (659)
T PLN03211 170 PKSLTKQEKILVAESVISELGLTKCE-NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLT 248 (659)
T ss_pred CCCCCHHHHHHHHHHHHHHcCChhhc-CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHH
Confidence 01111211000 0000123455799999999999999999999999999 78888888889999
Q ss_pred HHHHHHhCCCCEEEEEcCcccH
Q 004850 207 LKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 207 l~~l~~~~~~~~vil~SATl~~ 228 (727)
++++.+. +.++|+.||..+.
T Consensus 249 L~~l~~~--g~TvI~~sH~~~~ 268 (659)
T PLN03211 249 LGSLAQK--GKTIVTSMHQPSS 268 (659)
T ss_pred HHHHHhC--CCEEEEEecCCCH
Confidence 9987653 7899999999864
No 425
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.73 E-value=2.7e-08 Score=103.15 Aligned_cols=60 Identities=10% Similarity=0.104 Sum_probs=52.7
Q ss_pred ccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 166 YLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 166 ~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
.+|+|+++++.++++++.+|+++++|| +++|......+..+++++... +..+|+.||.++
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~--~~tiii~sH~~~ 206 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDG--KRSFIIVTHYQR 206 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHH
Confidence 599999999999999999999999999 788878888888888887543 678999999975
No 426
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.73 E-value=7.6e-09 Score=120.36 Aligned_cols=149 Identities=22% Similarity=0.326 Sum_probs=90.4
Q ss_pred hhcCCEEEEEcCCCChhhchhhHH-----------HhcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc--
Q 004850 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (727)
+..|+.++++|+|||||||++... ++++.++.. ..-++.+.++++.+-... -++.+++.-...
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~a 430 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPDA 430 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCCC
Confidence 789999999999999999988743 223333322 112334556665554444 677777743211
Q ss_pred --ccc---cceeceeeeecccc-ccCccc----cccChHHHHHHHhccccccCCeeEEeecc--CcChhhHHHHHHHHHH
Q 004850 142 --VTI---GEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDEA--HERTLATDVLFGLLKE 209 (727)
Q Consensus 142 --~~~---~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lIlDEa--her~~~~d~ll~ll~~ 209 (727)
.++ ...++......... ..++.+ ..+|+|++||..++++++.+++++||||| +.|......+.+.+..
T Consensus 431 t~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~ 510 (567)
T COG1132 431 TDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKK 510 (567)
T ss_pred CHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHH
Confidence 011 11111000001110 012222 35999999999999999999999999994 4455444556666654
Q ss_pred HHHhCCCCEEEEEcCcccHHH
Q 004850 210 VLKNRPDLKLVVMSATLEAEK 230 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~~~ 230 (727)
+. .++++++++|-++.-.
T Consensus 511 l~---~~rT~iiIaHRlsti~ 528 (567)
T COG1132 511 LL---KGRTTLIIAHRLSTIK 528 (567)
T ss_pred Hh---cCCEEEEEeccHhHHH
Confidence 43 3568888999885433
No 427
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.73 E-value=3.5e-08 Score=110.33 Aligned_cols=146 Identities=15% Similarity=0.163 Sum_probs=90.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCcccc---Cce-EEEEcccchhhhccHHHHHHHhc---cc-------
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRR---RKM-MIACTQPRRVAAMSVSRRVAEEM---DV------- 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~---~~~-~i~~t~p~~~~~~~v~~~v~~~~---~~------- 142 (727)
.+..|+.++|+|+|||||||++..+. +. .....+. .+. ..+...+......++.+.+.... +.
T Consensus 46 sI~~GEivgIiGpNGSGKSTLLkiLa--GL-l~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e 122 (549)
T PRK13545 46 EVPEGEIVGIIGLNGSGKSTLSNLIA--GV-TMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKE 122 (549)
T ss_pred EEeCCCEEEEEcCCCCCHHHHHHHHh--CC-CCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHH
Confidence 35789999999999999999987643 22 1110000 000 01111111122345555543211 10
Q ss_pred ---cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCC
Q 004850 143 ---TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDL 217 (727)
Q Consensus 143 ---~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~ 217 (727)
.+...+|.. ...+..+..+|+|+++|+.++++++.+|+++|||| +++|......++..++++... +.
T Consensus 123 ~i~elLe~lgL~------~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~--G~ 194 (549)
T PRK13545 123 IIPEIIEFADIG------KFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ--GK 194 (549)
T ss_pred HHHHHHHHcCCh------hHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhC--CC
Confidence 011111211 11245677899999999999999999999999999 788878888888888887432 67
Q ss_pred EEEEEcCcccH-HHHHh
Q 004850 218 KLVVMSATLEA-EKFQG 233 (727)
Q Consensus 218 ~vil~SATl~~-~~~~~ 233 (727)
.+|+.||.++. ..+++
T Consensus 195 TIIIVSHdl~~i~~l~D 211 (549)
T PRK13545 195 TIFFISHSLSQVKSFCT 211 (549)
T ss_pred EEEEEECCHHHHHHhCC
Confidence 99999999853 34443
No 428
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.73 E-value=6.9e-09 Score=123.96 Aligned_cols=147 Identities=16% Similarity=0.160 Sum_probs=89.7
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (727)
.+..|+.++|+|++||||||++.... +++.++.. ..-++.+.+++++|... .-++.+++.-...
T Consensus 501 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~gTi~eNi~l~~~~ 579 (710)
T TIGR03796 501 TLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLF-EGTVRDNLTLWDPT 579 (710)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhh-hccHHHHhhCCCCC
Confidence 46799999999999999999987432 22222211 11133456666666544 4577777742110
Q ss_pred ------ccccceeceeeeecccc-ccCcc----ccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 142 ------VTIGEEVGYSIRFEDCS-SARTV----LKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 142 ------~~~~~~vg~~~~~~~~~-~~~~~----i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
......+|......... ..++. -.-+|+|++||+.++++++.+++++|||| ++.|......+++.++
T Consensus 580 ~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~ 659 (710)
T TIGR03796 580 IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR 659 (710)
T ss_pred CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 01111122111000000 01121 23599999999999999999999999999 5555555555555554
Q ss_pred HHHHhCCCCEEEEEcCcccHH
Q 004850 209 EVLKNRPDLKLVVMSATLEAE 229 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~~~ 229 (727)
. .+.++|++||-++.-
T Consensus 660 ~-----~~~T~IiitHrl~~i 675 (710)
T TIGR03796 660 R-----RGCTCIIVAHRLSTI 675 (710)
T ss_pred h-----cCCEEEEEecCHHHH
Confidence 3 278999999998543
No 429
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.73 E-value=1e-08 Score=122.15 Aligned_cols=149 Identities=21% Similarity=0.277 Sum_probs=91.3
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (727)
.+..|+.++|+|++||||||++.... +++.++.. ...++.+.++++.|. +..-++.+++.-...
T Consensus 487 ~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~-lf~~TI~eNi~~~~~~ 565 (694)
T TIGR03375 487 TIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPR-LFYGTLRDNIALGAPY 565 (694)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChh-hhhhhHHHHHhCCCCC
Confidence 46789999999999999999987432 22222211 111234555555554 444578887753211
Q ss_pred ------ccccceeceeeeecccc-ccCc----cccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 142 ------VTIGEEVGYSIRFEDCS-SART----VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 142 ------~~~~~~vg~~~~~~~~~-~~~~----~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
......+|......... ..++ .-..+|+|++||..++++++.+++++|||| ++.|......+.+.+.
T Consensus 566 ~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~ 645 (694)
T TIGR03375 566 ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLK 645 (694)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 01111122110000000 0112 123599999999999999999999999999 5655555555666665
Q ss_pred HHHHhCCCCEEEEEcCcccHH
Q 004850 209 EVLKNRPDLKLVVMSATLEAE 229 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~~~ 229 (727)
++ .++.++|++||-++.-
T Consensus 646 ~~---~~~~T~iiItHrl~~~ 663 (694)
T TIGR03375 646 RW---LAGKTLVLVTHRTSLL 663 (694)
T ss_pred HH---hCCCEEEEEecCHHHH
Confidence 54 3478999999998643
No 430
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=2.4e-08 Score=105.21 Aligned_cols=150 Identities=21% Similarity=0.253 Sum_probs=95.2
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhc----------C------ccCCCc----cccCceEEEEcccchhhhccHHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIETP----DRRRKMMIACTQPRRVAAMSVSRRVA 137 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (727)
+..|+.++|+|+|||||||++..+.=. + .++... .....+.++++++.... .++.+++.
T Consensus 44 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~ 122 (276)
T PRK14271 44 FPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVL 122 (276)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHH
Confidence 568999999999999999998754311 1 001000 01223556666665444 67777664
Q ss_pred Hhccc----c----------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHH
Q 004850 138 EEMDV----T----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (727)
Q Consensus 138 ~~~~~----~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (727)
..... . ....+|..... ....+..+..+|+|+++++.++++++.+++++|+|| ++++.....
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~ 200 (276)
T PRK14271 123 AGVRAHKLVPRKEFRGVAQARLTEVGLWDAV--KDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTE 200 (276)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHcCCCchh--hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 32100 0 00111110000 001234567899999999999999999999999999 677777777
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
.++.+++++.+ +.++|++||.++. ..+++
T Consensus 201 ~l~~~L~~~~~---~~tiiivsH~~~~~~~~~d 230 (276)
T PRK14271 201 KIEEFIRSLAD---RLTVIIVTHNLAQAARISD 230 (276)
T ss_pred HHHHHHHHHhc---CCEEEEEeCCHHHHHHhCC
Confidence 78888887743 3689999999853 44443
No 431
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.73 E-value=4.4e-08 Score=103.31 Aligned_cols=145 Identities=10% Similarity=0.173 Sum_probs=85.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCc-cCCCcc--ccCceEEEEcccchhhhccHHHHHHHhccc------ccccee
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGV-DIETPD--RRRKMMIACTQPRRVAAMSVSRRVAEEMDV------TIGEEV 148 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~-~~~~~~--~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~------~~~~~v 148 (727)
+..|+.++|+|+|||||||++..+. +. ...... ....+.++++++.... .++.+++...... .....+
T Consensus 60 i~~Ge~~~liG~NGsGKSTLl~~I~--Gl~~p~~G~I~i~g~i~yv~q~~~l~~-~tv~enl~~~~~~~~~~~~~~l~~~ 136 (282)
T cd03291 60 IEKGEMLAITGSTGSGKTSLLMLIL--GELEPSEGKIKHSGRISFSSQFSWIMP-GTIKENIIFGVSYDEYRYKSVVKAC 136 (282)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCcEEEECCEEEEEeCcccccc-cCHHHHhhcccccCHHHHHHHHHHh
Confidence 5799999999999999999988643 22 111100 0012445565554333 3666665321100 000011
Q ss_pred ceeeeecccc-----ccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHH-HHHHHhCCCCEEE
Q 004850 149 GYSIRFEDCS-----SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL-KEVLKNRPDLKLV 220 (727)
Q Consensus 149 g~~~~~~~~~-----~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll-~~l~~~~~~~~vi 220 (727)
+......... .....+..+|+|+++++.++++++.+++++|+|| +++|......++..+ +.+ .. +..+|
T Consensus 137 ~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~-~~--~~tIi 213 (282)
T cd03291 137 QLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKL-MA--NKTRI 213 (282)
T ss_pred CCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHh-hC--CCEEE
Confidence 1100000000 1122345799999999999999999999999999 666665556566543 333 22 57899
Q ss_pred EEcCcccH
Q 004850 221 VMSATLEA 228 (727)
Q Consensus 221 l~SATl~~ 228 (727)
+.||.++.
T Consensus 214 iisH~~~~ 221 (282)
T cd03291 214 LVTSKMEH 221 (282)
T ss_pred EEeCChHH
Confidence 99998864
No 432
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.73 E-value=2.2e-07 Score=109.41 Aligned_cols=102 Identities=11% Similarity=0.072 Sum_probs=70.0
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHH---------------------HHhhhcCCCCCC
Q 004850 279 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPA---------------------MQQKIFEPAPPP 337 (727)
Q Consensus 279 ~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~---------------------~r~~~~~~~~~g 337 (727)
.++.+||+.++..+..+.+.|.+...... +...+.++++.+.+ ....+.+.|+..
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~----~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~ 589 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKF----EASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE 589 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhccccc----CCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC
Confidence 58999999999999998888876532210 12344555543322 112455666542
Q ss_pred CCCCCCCCcEEEEecCccccCcccCCeEEEE-cCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCc
Q 004850 338 SKEGGPPGRKIVVSTNIAETSLTIDGIVYVI-DPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPG 410 (727)
Q Consensus 338 ~~~~~~~~~kvlvaTniAe~gitIp~V~~VI-d~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G 410 (727)
...+|+|.+|..-||+|.|.+..++ | . |..-...+|-+||+=|. .+|
T Consensus 590 ------~~~~ilIVvdmllTGFDaP~l~tLyld--K------------------plk~h~LlQai~R~nR~~~~~ 638 (667)
T TIGR00348 590 ------ENPKLLIVVDMLLTGFDAPILNTLYLD--K------------------PLKYHGLLQAIARTNRIDGKD 638 (667)
T ss_pred ------CCceEEEEEcccccccCCCccceEEEe--c------------------cccccHHHHHHHHhccccCCC
Confidence 1569999999999999999996654 4 2 55556789999999995 444
No 433
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.73 E-value=3e-08 Score=100.38 Aligned_cols=152 Identities=13% Similarity=0.040 Sum_probs=85.1
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccc--cCceEE-EEcccchhhhccHHHHHHHhcc---ccccceecee
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDR--RRKMMI-ACTQPRRVAAMSVSRRVAEEMD---VTIGEEVGYS 151 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~--~~~~~i-~~t~p~~~~~~~v~~~v~~~~~---~~~~~~vg~~ 151 (727)
+.+|+.++|+|+|||||||++..+.-. .......- ..+..+ +...+.....+++.+++..... ..........
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~ 88 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGL-DAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFC 88 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC-ccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence 578999999999999999999754311 10111000 000001 1112223334566666543211 1000000000
Q ss_pred eeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 152 IRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 152 ~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
....+. ...+..+..+|+|+++|+.++++++.+++++|+|| ++.+......+...+.+..+ +..+|+.||.++.
T Consensus 89 ~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~---~~~ii~vsH~~~~ 165 (213)
T PRK15177 89 YQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ---QKGLIVLTHNPRL 165 (213)
T ss_pred HHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh---CCcEEEEECCHHH
Confidence 000011 11345677899999999999999999999999999 55555555556665544332 3468999999853
Q ss_pred -HHHHh
Q 004850 229 -EKFQG 233 (727)
Q Consensus 229 -~~~~~ 233 (727)
..+++
T Consensus 166 ~~~~~d 171 (213)
T PRK15177 166 IKEHCH 171 (213)
T ss_pred HHHhcC
Confidence 34443
No 434
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.73 E-value=6.9e-09 Score=123.62 Aligned_cols=146 Identities=21% Similarity=0.292 Sum_probs=86.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (727)
.+..|+.++|+|++||||||++.... +++.++.. ....+.+.+++++|.. ...++.+++.-...
T Consensus 503 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-F~gTIreNI~~g~~~ 581 (711)
T TIGR00958 503 TLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVL-FSGSVRENIAYGLTD 581 (711)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccc-cccCHHHHHhcCCCC
Confidence 46799999999999999999987432 22222211 1112345566666644 44677777753211
Q ss_pred ------ccccceeceeeeecccc-ccCcc----ccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 142 ------VTIGEEVGYSIRFEDCS-SARTV----LKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 142 ------~~~~~~vg~~~~~~~~~-~~~~~----i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
......+|.....+... ..++. -..+|+|++||+.++++++++++++|+|| ++.|......+.+
T Consensus 582 ~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--- 658 (711)
T TIGR00958 582 TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--- 658 (711)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH---
Confidence 01111122110000000 01222 23599999999999999999999999999 4444433332333
Q ss_pred HHHHhCCCCEEEEEcCcccH
Q 004850 209 EVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~~ 228 (727)
....++.++|++||.++.
T Consensus 659 --~~~~~~~TvIiItHrl~~ 676 (711)
T TIGR00958 659 --SRSRASRTVLLIAHRLST 676 (711)
T ss_pred --hhccCCCeEEEEeccHHH
Confidence 222357899999999854
No 435
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.72 E-value=3e-08 Score=106.00 Aligned_cols=150 Identities=17% Similarity=0.227 Sum_probs=95.0
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhc---------Cc-------cCCCc-----cccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLE---------GV-------DIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~---------~~-------~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|+.++|+|+|||||||++..+.=. .. ++... ...+.+.++++++.... .++.+++
T Consensus 68 i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl 146 (305)
T PRK14264 68 IPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENI 146 (305)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcccc-ccHHHHH
Confidence 578999999999999999998755311 10 01000 01124556666665443 4666666
Q ss_pred HHhcccc--------------------------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEe
Q 004850 137 AEEMDVT--------------------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVL 190 (727)
Q Consensus 137 ~~~~~~~--------------------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIl 190 (727)
....... ....+|...... ...+..+..+|+|+.+++.++++++.+++++|+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLL 224 (305)
T PRK14264 147 SYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN--DRLDDNALGLSGGQQQRLCIARCLAVDPEVILM 224 (305)
T ss_pred HhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh--HHhcCccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4321000 000001000000 112445668999999999999999999999999
Q ss_pred ec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 191 DE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 191 DE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
|| ++++......+..+++++.+ +..+|++||.++. ..+++
T Consensus 225 DEPtsgLD~~~~~~l~~~L~~~~~---~~tiiivtH~~~~i~~~~d 267 (305)
T PRK14264 225 DEPASALDPIATSKIEDLIEELAE---EYTVVVVTHNMQQAARISD 267 (305)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEEcCHHHHHHhcC
Confidence 99 77777777788888888754 3689999999854 44444
No 436
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.72 E-value=1.7e-08 Score=105.35 Aligned_cols=145 Identities=20% Similarity=0.309 Sum_probs=93.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh-----------cC------ccCCC---ccccCceEEEEcccchhhhccHHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EG------VDIET---PDRRRKMMIACTQPRRVAAMSVSRRVA 137 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~------~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (727)
+..|+.++|+|+|||||||++..+.= ++ .+... ......+.++++++....-.++.+++.
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~ 112 (257)
T PRK14246 33 IPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIA 112 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHH
Confidence 56899999999999999999874331 11 00100 011234556676665554567777664
Q ss_pred Hhc---ccc-----------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHH
Q 004850 138 EEM---DVT-----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (727)
Q Consensus 138 ~~~---~~~-----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (727)
... +.. ....+|...... ...+..+..+|+|++++..++++++.+|+++++|| .++|....+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~ 190 (257)
T PRK14246 113 YPLKSHGIKEKREIKKIVEECLRKVGLWKEVY--DRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ 190 (257)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCccch--hhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHH
Confidence 321 100 001111110000 11244667899999999999999999999999999 666777777
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
.+..++.++.. +.++|++||..+
T Consensus 191 ~l~~~l~~~~~---~~tiilvsh~~~ 213 (257)
T PRK14246 191 AIEKLITELKN---EIAIVIVSHNPQ 213 (257)
T ss_pred HHHHHHHHHhc---CcEEEEEECCHH
Confidence 78888887632 479999999985
No 437
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.72 E-value=1.1e-08 Score=117.97 Aligned_cols=148 Identities=18% Similarity=0.244 Sum_probs=92.3
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (727)
.+.+|+.++|+|++||||||++.... +++.++.. ....+.+.+++++|... ..++.+++.-...
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~ti~~Ni~~~~~~ 422 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLF-AGTIAENIRLARPD 422 (529)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCccc-CcCHHHHHhccCCC
Confidence 46799999999999999999987432 23322211 11123455666666544 4688888753211
Q ss_pred ------ccccceeceeeeecccc-ccCc----cccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 142 ------VTIGEEVGYSIRFEDCS-SART----VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 142 ------~~~~~~vg~~~~~~~~~-~~~~----~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
......+|.....+... ..++ .-..+|+|++||..++++++.+++++|+|| ++.|......+.+.+.
T Consensus 423 ~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~ 502 (529)
T TIGR02857 423 ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALR 502 (529)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 01111222111111110 0112 224599999999999999999999999999 5555555555666665
Q ss_pred HHHHhCCCCEEEEEcCcccH
Q 004850 209 EVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~~ 228 (727)
++ .++.++|++||.++.
T Consensus 503 ~~---~~~~t~i~itH~~~~ 519 (529)
T TIGR02857 503 AL---AQGRTVLLVTHRLAL 519 (529)
T ss_pred Hh---cCCCEEEEEecCHHH
Confidence 54 347899999999854
No 438
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.72 E-value=2.5e-08 Score=103.67 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=55.3
Q ss_pred CccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
+..+..+|+|+++++.++++++.+++++++|| ++.+......+..+++++.+. +..+|+.||.++.
T Consensus 134 ~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~--~~tIIiiSHd~~~ 201 (255)
T cd03236 134 DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED--DNYVLVVEHDLAV 201 (255)
T ss_pred cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEECCHHH
Confidence 45667899999999999999999999999999 666666667788888887653 6789999999853
No 439
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.71 E-value=8.7e-09 Score=123.00 Aligned_cols=148 Identities=22% Similarity=0.278 Sum_probs=90.5
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhc--
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM-- 140 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~-- 140 (727)
.+..|+.++|+|++||||||++.... +++.++.. ...++.+.+++++|... .-++.+++.-..
T Consensus 496 ~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~gTI~eNi~l~~~~ 574 (708)
T TIGR01193 496 TIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIF-SGSILENLLLGAKE 574 (708)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceeh-hHHHHHHHhccCCC
Confidence 46789999999999999999987432 22222111 11123556677666544 457777775321
Q ss_pred cc---c---ccceeceeeeecccc-ccCc----cccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHH
Q 004850 141 DV---T---IGEEVGYSIRFEDCS-SART----VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (727)
Q Consensus 141 ~~---~---~~~~vg~~~~~~~~~-~~~~----~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll 207 (727)
.. . .....|......... ..++ .-.-+|+|++||+.++++++.+++++|||| ++.|......+.+.+
T Consensus 575 ~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L 654 (708)
T TIGR01193 575 NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL 654 (708)
T ss_pred CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 10 0 111111110000000 0112 223589999999999999999999999999 555555555566655
Q ss_pred HHHHHhCCCCEEEEEcCcccHH
Q 004850 208 KEVLKNRPDLKLVVMSATLEAE 229 (727)
Q Consensus 208 ~~l~~~~~~~~vil~SATl~~~ 229 (727)
+.+ .+.++|++||.++.-
T Consensus 655 ~~~----~~~T~IiitHr~~~~ 672 (708)
T TIGR01193 655 LNL----QDKTIIFVAHRLSVA 672 (708)
T ss_pred HHh----cCCEEEEEecchHHH
Confidence 542 367899999998643
No 440
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=2.8e-08 Score=103.38 Aligned_cols=150 Identities=20% Similarity=0.277 Sum_probs=94.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh----------cCc------cCCC-----ccccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL----------EGV------DIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~~------~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|+.++|+|+|||||||++..+.= .+. ++.. ....+.+.++++.+.... .++.+++
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~eni 107 (253)
T PRK14261 29 IPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFP-KSIYENV 107 (253)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCc-ccHHHHH
Confidence 56899999999999999999886541 110 1110 001223556666665443 4676666
Q ss_pred HHhcccc--------------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 137 AEEMDVT--------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 137 ~~~~~~~--------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
....... ....+|....+ ....+..+..+|+|+++++.++++++.+++++|+|| .++|....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~ 185 (253)
T PRK14261 108 AYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV--KDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIAT 185 (253)
T ss_pred HhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh--HHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 4221100 00001110000 011245667899999999999999999999999999 66667777
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
..+..+++++.+ +..+|++||.++. ..+++
T Consensus 186 ~~l~~~l~~~~~---~~tvii~sh~~~~~~~~~d 216 (253)
T PRK14261 186 AKIEDLIEDLKK---EYTVIIVTHNMQQAARVSD 216 (253)
T ss_pred HHHHHHHHHHhh---CceEEEEEcCHHHHHhhCC
Confidence 778888887743 3689999998853 34443
No 441
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.71 E-value=1.7e-08 Score=118.24 Aligned_cols=144 Identities=18% Similarity=0.273 Sum_probs=96.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhc--------------CccCCCccccCceEEEEcccchhhhccHHHHHHHhccc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLE--------------GVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~--------------~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (727)
.+..|+.++|.||+||||||++....-. +.+.......+.+..+++++......++.+.+.-....
T Consensus 47 ~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~ 126 (617)
T TIGR00955 47 VAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHL 126 (617)
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhc
Confidence 3579999999999999999998754311 11000001122345677777666677888877422111
Q ss_pred c----------------ccceeceeeeeccccccCccc------cccChHHHHHHHhccccccCCeeEEeec--cCcChh
Q 004850 143 T----------------IGEEVGYSIRFEDCSSARTVL------KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTL 198 (727)
Q Consensus 143 ~----------------~~~~vg~~~~~~~~~~~~~~i------~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~ 198 (727)
. +.+.+|... ..++.+ .-+|+|+++|+.++.+++.+++++++|| .++|..
T Consensus 127 ~~~~~~~~~~~~~~v~~~l~~lgL~~------~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~ 200 (617)
T TIGR00955 127 RMPRRVTKKEKRERVDEVLQALGLRK------CANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSF 200 (617)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCchh------cCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHH
Confidence 1 111122110 112333 4599999999999999999999999999 677777
Q ss_pred hHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 199 ATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 199 ~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
....++..++++... +..+|+.+|....
T Consensus 201 ~~~~l~~~L~~l~~~--g~tvi~~~hq~~~ 228 (617)
T TIGR00955 201 MAYSVVQVLKGLAQK--GKTIICTIHQPSS 228 (617)
T ss_pred HHHHHHHHHHHHHhC--CCEEEEEeCCCCH
Confidence 788888888887643 7788899888753
No 442
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=2.7e-08 Score=103.38 Aligned_cols=144 Identities=20% Similarity=0.286 Sum_probs=93.1
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH--h-------cCc-------cCCCc-----cccCceEEEEcccchhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV--L-------EGV-------DIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l--l-------~~~-------~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+..|+.++|+|+|||||||++..+. . +.. ++... ...+.+.++++++.... .++.+++
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~nl 104 (250)
T PRK14266 26 IPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFP-KSIFDNV 104 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCc-chHHHHH
Confidence 5689999999999999999987553 1 111 11100 01234667777765554 3666666
Q ss_pred HHhccc------c--------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 137 AEEMDV------T--------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 137 ~~~~~~------~--------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
...... . ....+|...... ...+..+..+|+|+++++.++++++.+++++++|| +..|....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~--~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~ 182 (250)
T PRK14266 105 AYGLRIHGEDDEDFIEERVEESLKAAALWDEVK--DKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPIST 182 (250)
T ss_pred HhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH--HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHH
Confidence 432110 0 001111100000 11245567899999999999999999999999999 66666777
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
..+..+++++. . +..+|++||.++
T Consensus 183 ~~l~~~l~~~~-~--~~tiii~sh~~~ 206 (250)
T PRK14266 183 TKIEDLIHKLK-E--DYTIVIVTHNMQ 206 (250)
T ss_pred HHHHHHHHHHh-c--CCeEEEEECCHH
Confidence 77888888773 2 578999999875
No 443
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.71 E-value=1.6e-08 Score=117.13 Aligned_cols=148 Identities=17% Similarity=0.232 Sum_probs=82.1
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc---cccCceEEEEcccchhhhccHHHHH----HH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---DRRRKMMIACTQPRRVAAMSVSRRV----AE 138 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v----~~ 138 (727)
.+..|+.++|+|||||||||++.... +++.++... .....+.++++.+.... -++.++. ..
T Consensus 364 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n~~~~~~~ 442 (555)
T TIGR01194 364 RIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFD-DLIGPDEGEHASL 442 (555)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhh-hhhhcccccchhH
Confidence 46799999999999999999987543 222222110 01122334444443221 1222111 00
Q ss_pred hccccccceeceeeeecccccc-CccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHH-HHHHHhC
Q 004850 139 EMDVTIGEEVGYSIRFEDCSSA-RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL-KEVLKNR 214 (727)
Q Consensus 139 ~~~~~~~~~vg~~~~~~~~~~~-~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll-~~l~~~~ 214 (727)
+.-......+|........... ++ ...+|+|+++|+.++++++.+++++|+|| +++|......+.+.+ +.+. .
T Consensus 443 ~~~~~~~~~~~l~~~~~~lp~g~~t-~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~--~ 519 (555)
T TIGR01194 443 DNAQQYLQRLEIADKVKIEDGGFST-TTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLK--R 519 (555)
T ss_pred HHHHHHHHHcCCchhhcccccccCC-cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH--h
Confidence 0001111122211111111111 12 25699999999999999999999999999 566655555555433 2332 2
Q ss_pred CCCEEEEEcCcccH
Q 004850 215 PDLKLVVMSATLEA 228 (727)
Q Consensus 215 ~~~~vil~SATl~~ 228 (727)
.+.++|++||.++.
T Consensus 520 ~~~tiiiisH~~~~ 533 (555)
T TIGR01194 520 QGKTIIIISHDDQY 533 (555)
T ss_pred CCCEEEEEeccHHH
Confidence 37899999998753
No 444
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.70 E-value=4.2e-08 Score=102.86 Aligned_cols=150 Identities=16% Similarity=0.275 Sum_probs=94.3
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhc----------C------ccCC---C----ccccCceEEEEcccchhhhccHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIE---T----PDRRRKMMIACTQPRRVAAMSVSR 134 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~---~----~~~~~~~~i~~t~p~~~~~~~v~~ 134 (727)
+..|+.++|+|+|||||||++..+.=. + .+.. . ....+.+.++++++..... ++.+
T Consensus 39 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~e 117 (265)
T PRK14252 39 VHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFE 117 (265)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHH
Confidence 578999999999999999998754310 1 0000 0 0012234566666655543 6666
Q ss_pred HHHHhccc--------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChh
Q 004850 135 RVAEEMDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTL 198 (727)
Q Consensus 135 ~v~~~~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~ 198 (727)
++...... .....+|..... ....+..+..+|+|+++++.++++++.+++++|+|| ++++..
T Consensus 118 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~ 195 (265)
T PRK14252 118 NVAYGLRIRGVKRRSILEERVENALRNAALWDEV--KDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPI 195 (265)
T ss_pred HHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhh--hHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHH
Confidence 66432110 000011110000 011234566899999999999999999999999999 677777
Q ss_pred hHHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 199 ATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 199 ~~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
....+..+++++.. +..+|++||.++. ..+++
T Consensus 196 ~~~~l~~~l~~l~~---~~tiiivth~~~~~~~~~d 228 (265)
T PRK14252 196 ATASIEELISDLKN---KVTILIVTHNMQQAARVSD 228 (265)
T ss_pred HHHHHHHHHHHHHh---CCEEEEEecCHHHHHHhCC
Confidence 77778888887742 4789999998853 34443
No 445
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.70 E-value=3.5e-08 Score=113.85 Aligned_cols=145 Identities=18% Similarity=0.226 Sum_probs=93.3
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCcc-CCCc----cccCceEEEEcccch-h-hhccHHHHHHHhccc-------
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVD-IETP----DRRRKMMIACTQPRR-V-AAMSVSRRVAEEMDV------- 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~-~~~~----~~~~~~~i~~t~p~~-~-~~~~v~~~v~~~~~~------- 142 (727)
.+..|+.++|+|+|||||||++..+. +.. .... .....+.++++.+.. + ...++.+.+......
T Consensus 341 ~i~~Ge~~~l~G~NGsGKSTLl~~i~--G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 418 (530)
T PRK15064 341 LLEAGERLAIIGENGVGKTTLLRTLV--GELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAV 418 (530)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHH
Confidence 46789999999999999999988653 220 0110 111234556655431 2 235666655321100
Q ss_pred -cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEE
Q 004850 143 -TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKL 219 (727)
Q Consensus 143 -~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~v 219 (727)
.....+|.. ....+..+..+|+|+++|+.++++++.+++++|+|| +++|......+..+++++ +..+
T Consensus 419 ~~~l~~~~l~-----~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~tv 488 (530)
T PRK15064 419 RGTLGRLLFS-----QDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-----EGTL 488 (530)
T ss_pred HHHHHHcCCC-----hhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC-----CCEE
Confidence 011112210 012356678899999999999999999999999999 787777777777777664 3489
Q ss_pred EEEcCccc-HHHHHh
Q 004850 220 VVMSATLE-AEKFQG 233 (727)
Q Consensus 220 il~SATl~-~~~~~~ 233 (727)
|++||..+ ...+++
T Consensus 489 i~vsHd~~~~~~~~d 503 (530)
T PRK15064 489 IFVSHDREFVSSLAT 503 (530)
T ss_pred EEEeCCHHHHHHhCC
Confidence 99999985 344443
No 446
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.70 E-value=1.1e-08 Score=119.36 Aligned_cols=148 Identities=19% Similarity=0.260 Sum_probs=91.5
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (727)
.+..|+.++|+|++||||||++.... +++.++.. ......+.+++++|.-. .-++.+++.-...
T Consensus 354 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf-~~Ti~~Ni~~~~~~ 432 (571)
T TIGR02203 354 VIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLF-NDTIANNIAYGRTE 432 (571)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccc-cccHHHHHhcCCCC
Confidence 46789999999999999999987532 22221111 11122455667666543 4577777652210
Q ss_pred -------ccccceeceeeeecccc-ccCccc----cccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHH
Q 004850 142 -------VTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (727)
Q Consensus 142 -------~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll 207 (727)
......+|...-..... ..++.+ ..+|+|++||..++++++.+++++|||| ++.|......++..+
T Consensus 433 ~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L 512 (571)
T TIGR02203 433 QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAAL 512 (571)
T ss_pred CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 01112222111001100 011222 3599999999999999999999999999 666666666666666
Q ss_pred HHHHHhCCCCEEEEEcCcccH
Q 004850 208 KEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 208 ~~l~~~~~~~~vil~SATl~~ 228 (727)
+.. .++..+|++||..+.
T Consensus 513 ~~~---~~~~tiIiitH~~~~ 530 (571)
T TIGR02203 513 ERL---MQGRTTLVIAHRLST 530 (571)
T ss_pred HHH---hCCCEEEEEehhhHH
Confidence 554 347899999999753
No 447
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.70 E-value=1.9e-08 Score=116.36 Aligned_cols=147 Identities=19% Similarity=0.229 Sum_probs=85.7
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHH---HHHh
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRR---VAEE 139 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~---v~~~ 139 (727)
.+..|+.++|+|+|||||||++.... +++.++.. ....+.+.++++++.... .++.++ ...+
T Consensus 345 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n~~~~~~~ 423 (547)
T PRK10522 345 TIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFD-QLLGPEGKPANPA 423 (547)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHH-HhhccccCchHHH
Confidence 46799999999999999999987543 22222221 011234556666554332 122111 0010
Q ss_pred ccccccceeceeeeeccccccCc--cccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCC
Q 004850 140 MDVTIGEEVGYSIRFEDCSSART--VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (727)
Q Consensus 140 ~~~~~~~~vg~~~~~~~~~~~~~--~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~ 215 (727)
.-......+|...... .... .-..+|+|+++|..++++++.+++++|+|| ++.|......+.+.+.+..+. .
T Consensus 424 ~~~~~~~~~~l~~~~~---~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~-~ 499 (547)
T PRK10522 424 LVEKWLERLKMAHKLE---LEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQE-M 499 (547)
T ss_pred HHHHHHHHcCCchhhh---ccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHh-C
Confidence 0001111112111000 0000 013589999999999999999999999999 566666666666666554432 2
Q ss_pred CCEEEEEcCcccH
Q 004850 216 DLKLVVMSATLEA 228 (727)
Q Consensus 216 ~~~vil~SATl~~ 228 (727)
+.++|++||..+.
T Consensus 500 ~~tvi~itH~~~~ 512 (547)
T PRK10522 500 GKTIFAISHDDHY 512 (547)
T ss_pred CCEEEEEEechHH
Confidence 6899999998743
No 448
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3e-08 Score=97.85 Aligned_cols=144 Identities=21% Similarity=0.288 Sum_probs=95.4
Q ss_pred hhhcCCEEEEEcCCCChhhchhh-------------HHHhcCccCCC--c--cccCceEEEEcccchhhhccHHHHHHHh
Q 004850 77 VLKANQVIILVGETGSGKTTQIP-------------QFVLEGVDIET--P--DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~-------------~~ll~~~~~~~--~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
.+..|++.+|.|||||||||+.. .+++++.++.. + ..+.++.+.++.|..++-.++.+.+...
T Consensus 26 ~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a 105 (251)
T COG0396 26 TVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAA 105 (251)
T ss_pred eEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHH
Confidence 35789999999999999999876 34555555443 1 1244778899999999888887777543
Q ss_pred ccccc----------------cceeceeeeeccccccCcccc-ccChHHHHHHHhccccccCCeeEEeeccCcChhhHHH
Q 004850 140 MDVTI----------------GEEVGYSIRFEDCSSARTVLK-YLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDV 202 (727)
Q Consensus 140 ~~~~~----------------~~~vg~~~~~~~~~~~~~~i~-~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ 202 (727)
.+..- ...+++.. .-.+..+. -.|+|.+.|.-+...++.+|++.||||.| --++.|.
T Consensus 106 ~n~~~~~~~~~~~~~~~~~e~~~~l~~~~-----~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~D-SGLDIda 179 (251)
T COG0396 106 MNARRGARGILPEFIKELKEKAELLGLDE-----EFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPD-SGLDIDA 179 (251)
T ss_pred HHhhhccccccHHHHHHHHHHHHHcCCCH-----HHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCC-cCccHHH
Confidence 32211 11122211 00112222 37999999999888889999999999976 3456665
Q ss_pred HHHHHHHHHHh-CCCCEEEEEcCcc
Q 004850 203 LFGLLKEVLKN-RPDLKLVVMSATL 226 (727)
Q Consensus 203 ll~ll~~l~~~-~~~~~vil~SATl 226 (727)
+..+-+-+... .++..++++||.-
T Consensus 180 lk~V~~~i~~lr~~~~~~liITHy~ 204 (251)
T COG0396 180 LKIVAEGINALREEGRGVLIITHYQ 204 (251)
T ss_pred HHHHHHHHHHHhcCCCeEEEEecHH
Confidence 44444333332 2388899999975
No 449
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.69 E-value=1.2e-08 Score=106.41 Aligned_cols=148 Identities=17% Similarity=0.237 Sum_probs=88.3
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc--
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (727)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.|... ..++.+++.....
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~-~~tv~~nl~~~~~~~ 122 (257)
T cd03288 44 IKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILF-SGSIRFNLDPECKCT 122 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCccc-ccHHHHhcCcCCCCC
Confidence 5689999999999999999987532 11111111 01122345556555332 2344433321000
Q ss_pred ----ccccceeceeeeecc----c-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 142 ----VTIGEEVGYSIRFED----C-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 142 ----~~~~~~vg~~~~~~~----~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
.......+.....+. . .........+|+|+++++.++++++.+++++|+|| ++.+....+.+..+++.+
T Consensus 123 ~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~ 202 (257)
T cd03288 123 DDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTA 202 (257)
T ss_pred HHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh
Confidence 000001111100000 0 01123456799999999999999999999999999 666666677777777764
Q ss_pred HHhCCCCEEEEEcCcccHH
Q 004850 211 LKNRPDLKLVVMSATLEAE 229 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~~~ 229 (727)
. .+.++|++||.++..
T Consensus 203 ~---~~~tiii~sh~~~~~ 218 (257)
T cd03288 203 F---ADRTVVTIAHRVSTI 218 (257)
T ss_pred c---CCCEEEEEecChHHH
Confidence 2 267999999998643
No 450
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.69 E-value=1.4e-08 Score=117.96 Aligned_cols=148 Identities=16% Similarity=0.219 Sum_probs=91.4
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (727)
.+..|+.++|+|++||||||++.... +++.++.. ....+.+.+++++|.... -++.+++.-...
T Consensus 337 ~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~ 415 (569)
T PRK10789 337 TLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS-DTVANNIALGRPD 415 (569)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeecc-ccHHHHHhcCCCC
Confidence 46799999999999999999987442 11111111 011224556666665443 477777642210
Q ss_pred ------ccccceeceeeeeccc----c-ccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 142 ------VTIGEEVGYSIRFEDC----S-SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 142 ------~~~~~~vg~~~~~~~~----~-~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
......+|........ . ..+..-..+|+|+++|+.++++++.+++++|+|| +++|......+++.++
T Consensus 416 ~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~ 495 (569)
T PRK10789 416 ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLR 495 (569)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 0011111211000000 0 0112234599999999999999999999999999 6666666677777776
Q ss_pred HHHHhCCCCEEEEEcCcccH
Q 004850 209 EVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~~ 228 (727)
++. ++.++|++||.++.
T Consensus 496 ~~~---~~~tii~itH~~~~ 512 (569)
T PRK10789 496 QWG---EGRTVIISAHRLSA 512 (569)
T ss_pred HHh---CCCEEEEEecchhH
Confidence 652 37899999998753
No 451
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.69 E-value=9e-07 Score=106.23 Aligned_cols=135 Identities=12% Similarity=0.109 Sum_probs=84.3
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCC
Q 004850 260 RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSK 339 (727)
Q Consensus 260 ~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~ 339 (727)
.+|.+.+...+..+. ..+|++|||+|+.+..+.+++.|... ...++.=..+.+ +.++.+.|+.+
T Consensus 630 ~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~---------~~~~l~Qg~~~~---~~~l~~~F~~~-- 693 (820)
T PRK07246 630 EVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW---------QVSHLAQEKNGT---AYNIKKRFDRG-- 693 (820)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc---------CCcEEEeCCCcc---HHHHHHHHHcC--
Confidence 356666677776655 35789999999999999998888642 122322121223 34466777766
Q ss_pred CCCCCCcEEEEecCccccCcccCC--eEEEEcCCCccceeecccc----------Ccccc--ccccccHhhHHhhhcccC
Q 004850 340 EGGPPGRKIVVSTNIAETSLTIDG--IVYVIDPGFAKQKVYNPRV----------RVESL--LVSPISKASAHQRSGRAG 405 (727)
Q Consensus 340 ~~~~~~~kvlvaTniAe~gitIp~--V~~VId~g~~k~~~~~~~~----------~~~~l--~~~pis~~~~~qR~GRaG 405 (727)
...|+++|+-.--|||+|+ ...||=.+++-..-.||-. |-+.. ...|.-.-...|=+||.=
T Consensus 694 -----~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLI 768 (820)
T PRK07246 694 -----EQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTM 768 (820)
T ss_pred -----CCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccc
Confidence 6789999999999999973 5555544553222222210 11111 122444556789999998
Q ss_pred CCC--CceEEEe
Q 004850 406 RTQ--PGKCFRL 415 (727)
Q Consensus 406 R~~--~G~~~~L 415 (727)
|.. .|.++-|
T Consensus 769 Rs~~D~Gvv~il 780 (820)
T PRK07246 769 RREDQKSAVLIL 780 (820)
T ss_pred cCCCCcEEEEEE
Confidence 883 6876644
No 452
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.68 E-value=5e-08 Score=115.02 Aligned_cols=149 Identities=16% Similarity=0.195 Sum_probs=90.1
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCc----cccCceEEEEcccchhhhccHHHHHHHhcc-----------
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETP----DRRRKMMIACTQPRRVAAMSVSRRVAEEMD----------- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~----------- 141 (727)
.+..|+.++|+|+|||||||++..+. .-.+.... .....+.+++++|.... .++.+++.....
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~-Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~ 551 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILG-ELWPVYGGRLTKPAKGKLFYVPQRPYMTL-GTLRDQIIYPDSSEDMKRRGLSD 551 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCeEeecCCCcEEEECCCCCCCC-cCHHHHHhcCCChhhhhccCCCH
Confidence 46799999999999999999987542 11111110 11234556677765333 377776643110
Q ss_pred ---ccccceeceeeeecc---ccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHh
Q 004850 142 ---VTIGEEVGYSIRFED---CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (727)
Q Consensus 142 ---~~~~~~vg~~~~~~~---~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~ 213 (727)
......+|.....+. ..........+|+|+++|+.++++++.+|+++|||| +++|....+.+.+.+++
T Consensus 552 ~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---- 627 (659)
T TIGR00954 552 KDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---- 627 (659)
T ss_pred HHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----
Confidence 011111221100000 000111234799999999999999999999999999 56655555555555443
Q ss_pred CCCCEEEEEcCcccHHHHH
Q 004850 214 RPDLKLVVMSATLEAEKFQ 232 (727)
Q Consensus 214 ~~~~~vil~SATl~~~~~~ 232 (727)
. +..+|+.||.++...++
T Consensus 628 ~-~~tvI~isH~~~~~~~~ 645 (659)
T TIGR00954 628 F-GITLFSVSHRKSLWKYH 645 (659)
T ss_pred c-CCEEEEEeCchHHHHhC
Confidence 2 78999999998754433
No 453
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.68 E-value=4.1e-08 Score=112.21 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=57.4
Q ss_pred CccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
+..+..+|+|+++|+.++++++.+++++|+|| +++|......+.++++++.+. ....+|++||.++
T Consensus 396 ~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~-~~~tviivsHd~~ 463 (490)
T PRK10938 396 DAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE-GETQLLFVSHHAE 463 (490)
T ss_pred cCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc-CCcEEEEEecchh
Confidence 55677899999999999999999999999999 788888888899999998654 2456999999985
No 454
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.68 E-value=1.8e-08 Score=120.38 Aligned_cols=142 Identities=23% Similarity=0.297 Sum_probs=93.0
Q ss_pred hhhcCCEEEEEcCCCChhhchhhH-----------HHhcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (727)
.+..|+.++++|++||||||.+.+ +++++.++.. ...+..++++.+.| .+.+.++.+++.....
T Consensus 375 ~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QeP-vlF~~tI~eNI~~G~~d 453 (1228)
T KOG0055|consen 375 KIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEP-VLFATTIRENIRYGKPD 453 (1228)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeech-hhhcccHHHHHhcCCCc
Confidence 467999999999999999998763 3344443322 12233566777777 6667888888853220
Q ss_pred ---c---cccc-----------eeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeecc--CcChhhHHH
Q 004850 142 ---V---TIGE-----------EVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEA--HERTLATDV 202 (727)
Q Consensus 142 ---~---~~~~-----------~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEa--her~~~~d~ 202 (727)
. +... --||.. .. ..+=..+|+|++||+.++++++.+|++|+|||| .+|......
T Consensus 454 at~~~i~~a~k~ana~~fi~~lp~g~~T----~v--ge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~ 527 (1228)
T KOG0055|consen 454 ATREEIEEAAKAANAHDFILKLPDGYDT----LV--GERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERV 527 (1228)
T ss_pred ccHHHHHHHHHHccHHHHHHhhHHhhcc----cc--cCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHH
Confidence 0 0000 012211 01 111124999999999999999999999999994 455555555
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 203 LFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 203 ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
+.+.|.... .++++|+++|-+..
T Consensus 528 Vq~ALd~~~---~grTTivVaHRLSt 550 (1228)
T KOG0055|consen 528 VQEALDKAS---KGRTTIVVAHRLST 550 (1228)
T ss_pred HHHHHHHhh---cCCeEEEEeeehhh
Confidence 666665543 36799999999854
No 455
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.68 E-value=4.6e-08 Score=98.58 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=64.0
Q ss_pred CccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcc-cHHHHHhh
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGY 234 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl-~~~~~~~~ 234 (727)
+.++.-+|.|++.|.-++.++|.+|+++.||| +++|-...+-+.+.+++....+ +.+|++.||.+ +.+.+++.
T Consensus 151 k~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~-~aTVllTTH~~~di~~lc~r 226 (325)
T COG4586 151 KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEER-QATVLLTTHIFDDIATLCDR 226 (325)
T ss_pred hhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhh-CceEEEEecchhhHHHhhhh
Confidence 56677899999999999999999999999999 7887788888999999998877 89999999999 46777754
No 456
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.68 E-value=6.7e-08 Score=109.50 Aligned_cols=144 Identities=24% Similarity=0.307 Sum_probs=87.4
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCc----cCCCccccCceEEEEcccchhhhccHHHHHHHhcc-----------
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGV----DIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD----------- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~----~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~----------- 141 (727)
.+..|+.++++|+||+||||++..+.=... .+... ....+..+.+.+......++.+.+.....
T Consensus 25 ~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~-~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~ 103 (530)
T COG0488 25 TLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRP-KGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEE 103 (530)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeec-CCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHH
Confidence 467899999999999999999985432111 01111 11134455555554444444443321100
Q ss_pred --c---------------cccceeceeeeec--------cccccCccccccChHHHHHHHhccccccCCeeEEeec--cC
Q 004850 142 --V---------------TIGEEVGYSIRFE--------DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AH 194 (727)
Q Consensus 142 --~---------------~~~~~vg~~~~~~--------~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--ah 194 (727)
. .....=||..+.. +.....+.+..+|+|++.|+.++.+++.+|++|+||| .|
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNH 183 (530)
T COG0488 104 AYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNH 183 (530)
T ss_pred HHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 0 0000001111000 0011156778899999999999999999999999999 78
Q ss_pred cChhhHHHHHHHHHHHHHhCCCCEEEEEcCcc
Q 004850 195 ERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (727)
Q Consensus 195 er~~~~d~ll~ll~~l~~~~~~~~vil~SATl 226 (727)
+|.....++.+.|+ .+++ .+|++||+-
T Consensus 184 LD~~~i~WLe~~L~----~~~g-tviiVSHDR 210 (530)
T COG0488 184 LDLESIEWLEDYLK----RYPG-TVIVVSHDR 210 (530)
T ss_pred cCHHHHHHHHHHHH----hCCC-cEEEEeCCH
Confidence 76666666665554 4557 999999984
No 457
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.67 E-value=1.4e-08 Score=118.34 Aligned_cols=148 Identities=18% Similarity=0.253 Sum_probs=91.1
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (727)
.+..|+.++|+|++||||||++.... +++.++.. ....+.+.+++++|.. ...++.+++.-...
T Consensus 362 ~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~l-f~~Ti~~Ni~~~~~~ 440 (576)
T TIGR02204 362 TVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVL-FAASVMENIRYGRPD 440 (576)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCcc-ccccHHHHHhcCCCC
Confidence 36799999999999999999987543 12211111 1112245566666643 34567777643110
Q ss_pred ------ccccceeceeeeeccc----c-ccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 142 ------VTIGEEVGYSIRFEDC----S-SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 142 ------~~~~~~vg~~~~~~~~----~-~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
......+|.....+.. . .....-..+|+|+++|+.++++++++++++|+|| ++.|....+.+++.++
T Consensus 441 ~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~ 520 (576)
T TIGR02204 441 ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALE 520 (576)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHH
Confidence 0011122211101100 0 0111223599999999999999999999999999 6666666666666666
Q ss_pred HHHHhCCCCEEEEEcCcccH
Q 004850 209 EVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~~ 228 (727)
.+ .++.++|++||..+.
T Consensus 521 ~~---~~~~t~IiitH~~~~ 537 (576)
T TIGR02204 521 TL---MKGRTTLIIAHRLAT 537 (576)
T ss_pred HH---hCCCEEEEEecchHH
Confidence 65 247899999999854
No 458
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.66 E-value=4.7e-07 Score=104.12 Aligned_cols=163 Identities=21% Similarity=0.258 Sum_probs=94.4
Q ss_pred CCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHH-HHhcccc
Q 004850 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRV-AEEMDVT 143 (727)
Q Consensus 65 lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v-~~~~~~~ 143 (727)
+-+..+|.+.++.+-.++-++|++||-+|||-.-+ +.++.. +... ..+++|. .-|.....-+++-.+ +.+....
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisf-Y~iEKV-LRes--D~~VVIy-vaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISF-YAIEKV-LRES--DSDVVIY-VAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccH-HHHHHH-Hhhc--CCCEEEE-ecchHHHhhhhhHHHHHhhccCc
Confidence 45678999999999999999999999999996533 222222 1111 1133333 334433333443333 2221111
Q ss_pred c--c-ceeceeeeeccccccCccccccChHHHHHHHhccc----cccCCeeEEeeccCcCh-hhHHHHHHHHHHHHHhCC
Q 004850 144 I--G-EEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP----LLERYKVIVLDEAHERT-LATDVLFGLLKEVLKNRP 215 (727)
Q Consensus 144 ~--~-~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~----ll~~~~~lIlDEaher~-~~~d~ll~ll~~l~~~~~ 215 (727)
. | ...|--.+.-+....++++.+.-|..++-++++.+ ...+.+++|+||+|.-- .+.+.+.+.+--+.
T Consensus 585 ~~rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li---- 660 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI---- 660 (1330)
T ss_pred cccchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc----
Confidence 1 1 11121111111122367787888888888887753 37899999999999522 22233333332221
Q ss_pred CCEEEEEcCcc-cHHHHHhhhc
Q 004850 216 DLKLVVMSATL-EAEKFQGYFY 236 (727)
Q Consensus 216 ~~~vil~SATl-~~~~~~~~f~ 236 (727)
..-++.+|||+ ++..+..|+.
T Consensus 661 ~CP~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 661 PCPFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred CCCeeEEecccCCHHHHHHHHH
Confidence 46799999999 6777776654
No 459
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.66 E-value=9.1e-08 Score=97.79 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=56.0
Q ss_pred cCccccccChHHHHHHHhccccccCC--eeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 160 ARTVLKYLTDGMLLREAMTDPLLERY--KVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~--~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
.+..+..+|+|+++++.++++++.++ +++|+|| ++.+......++.+++++... +..+|++||.++.
T Consensus 131 ~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~--g~tii~itH~~~~ 201 (226)
T cd03270 131 LSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDL--GNTVLVVEHDEDT 201 (226)
T ss_pred ccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhC--CCEEEEEEeCHHH
Confidence 35567789999999999999999997 5999999 677777778888888887543 7899999999864
No 460
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.65 E-value=6.5e-08 Score=112.05 Aligned_cols=144 Identities=17% Similarity=0.193 Sum_probs=93.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCcc-CCCc----cccCceEEEEcccc-hhhhccHHHHHHHhccc--------
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVD-IETP----DRRRKMMIACTQPR-RVAAMSVSRRVAEEMDV-------- 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~-~~~~----~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~~-------- 142 (727)
.+..|+.++|+|+|||||||++..+. +.. .... .....+.++++.+. .....++.+.+......
T Consensus 344 ~i~~Ge~~~l~G~NGsGKSTLl~~l~--G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 421 (552)
T TIGR03719 344 KLPPGGIVGVIGPNGAGKSTLFRMIT--GQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREV 421 (552)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHc--CCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchH
Confidence 36899999999999999999988653 210 0010 00112445565542 33345777766432110
Q ss_pred ---cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCC
Q 004850 143 ---TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDL 217 (727)
Q Consensus 143 ---~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~ 217 (727)
.....+|.. ....+..+..+|+|+++|+.++++++.+++++|||| +|+|......+..+++++ . +
T Consensus 422 ~~~~~l~~~~l~-----~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~-~- 491 (552)
T TIGR03719 422 PSRAYVGRFNFK-----GSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF---A-G- 491 (552)
T ss_pred HHHHHHHhCCCC-----hhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC---C-C-
Confidence 001111110 001245677899999999999999999999999999 788878888888877775 1 3
Q ss_pred EEEEEcCccc-HHHHH
Q 004850 218 KLVVMSATLE-AEKFQ 232 (727)
Q Consensus 218 ~vil~SATl~-~~~~~ 232 (727)
.+|++||.++ ...++
T Consensus 492 ~viivsHd~~~~~~~~ 507 (552)
T TIGR03719 492 CAVVISHDRWFLDRIA 507 (552)
T ss_pred eEEEEeCCHHHHHHhC
Confidence 6999999985 34444
No 461
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.65 E-value=3.9e-08 Score=106.74 Aligned_cols=146 Identities=21% Similarity=0.244 Sum_probs=92.0
Q ss_pred HhhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 76 QVLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 76 ~~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
-.+..|+.++|+||+||||||+....+ +++.++.. ....+.+++.|+.- .+..-+++++++..-.
T Consensus 357 F~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdV-eLF~GTIaeNIaRf~~ 435 (580)
T COG4618 357 FALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDV-ELFDGTIAENIARFGE 435 (580)
T ss_pred eEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccc-eecCCcHHHHHHhccc
Confidence 356799999999999999999987432 33332222 12233445555433 2334578888876441
Q ss_pred cc-------------ccce-----eceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHH
Q 004850 142 VT-------------IGEE-----VGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (727)
Q Consensus 142 ~~-------------~~~~-----vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (727)
.. +.+. -||..+.. ..=.-+|+|++||+.+++++..+|.++|||| +++|.....
T Consensus 436 ~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG------~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~ 509 (580)
T COG4618 436 EADPEKVIEAARLAGVHELILRLPQGYDTRIG------EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEA 509 (580)
T ss_pred cCCHHHHHHHHHHcChHHHHHhCcCCccCccC------CCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHH
Confidence 11 0111 12321111 1112589999999999999999999999999 555544444
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCcccHHH
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLEAEK 230 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~~~~ 230 (727)
-+..-+..+.++ +..+|+++|-...-.
T Consensus 510 AL~~Ai~~~k~r--G~~vvviaHRPs~L~ 536 (580)
T COG4618 510 ALAAAILAAKAR--GGTVVVIAHRPSALA 536 (580)
T ss_pred HHHHHHHHHHHc--CCEEEEEecCHHHHh
Confidence 566666665444 788999998765433
No 462
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.65 E-value=2.3e-08 Score=116.53 Aligned_cols=148 Identities=20% Similarity=0.239 Sum_probs=91.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhccc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (727)
.+..|+.++|+|++||||||++.... +++.++.. ....+.+.+++++|... ..++.+++.-....
T Consensus 357 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf-~~ti~~Ni~~~~~~ 435 (585)
T TIGR01192 357 EAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLF-NRSIRENIRLGREG 435 (585)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccC-cccHHHHHhcCCCC
Confidence 46799999999999999999987432 12211111 01122455666666443 45777777432110
Q ss_pred ----c---ccceeceeeeeccc----c-ccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 143 ----T---IGEEVGYSIRFEDC----S-SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 143 ----~---~~~~vg~~~~~~~~----~-~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
. ....+|........ . ........+|+|+++|+.++++++.+++++|+|| +++|......+.+.+.
T Consensus 436 ~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~ 515 (585)
T TIGR01192 436 ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAID 515 (585)
T ss_pred CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHH
Confidence 0 01111111000000 0 1122344699999999999999999999999999 6666666666777776
Q ss_pred HHHHhCCCCEEEEEcCcccH
Q 004850 209 EVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~~ 228 (727)
++ .++..+|++||..+.
T Consensus 516 ~~---~~~~tvI~isH~~~~ 532 (585)
T TIGR01192 516 AL---RKNRTTFIIAHRLST 532 (585)
T ss_pred HH---hCCCEEEEEEcChHH
Confidence 65 237899999999753
No 463
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.65 E-value=6.7e-08 Score=112.02 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=94.3
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCc----cccCceEEEEccc-chhhhccHHHHHHHhcccc-ccc---e
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETP----DRRRKMMIACTQP-RRVAAMSVSRRVAEEMDVT-IGE---E 147 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~----~~~~~~~i~~t~p-~~~~~~~v~~~v~~~~~~~-~~~---~ 147 (727)
.+..|+.++|+|+|||||||++..+.=... .... .....+.++++.+ ......++.+.+....... ... .
T Consensus 346 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 424 (556)
T PRK11819 346 SLPPGGIVGIIGPNGAGKSTLFKMITGQEQ-PDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIP 424 (556)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHH
Confidence 368999999999999999999986541110 0010 0011345566554 2334457777664321100 000 0
Q ss_pred eceeeeecccc--ccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEc
Q 004850 148 VGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMS 223 (727)
Q Consensus 148 vg~~~~~~~~~--~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~S 223 (727)
.......-+.. ..+..+..+|+|+++|+.++++++.+++++|||| +++|....+.+..++..+ .+ .+|++|
T Consensus 425 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~-tvi~vt 499 (556)
T PRK11819 425 SRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF----PG-CAVVIS 499 (556)
T ss_pred HHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CC-eEEEEE
Confidence 00000000111 1255677899999999999999999999999999 788888888888887765 23 789999
Q ss_pred Cccc-HHHHHh
Q 004850 224 ATLE-AEKFQG 233 (727)
Q Consensus 224 ATl~-~~~~~~ 233 (727)
|.++ ...+++
T Consensus 500 Hd~~~~~~~~d 510 (556)
T PRK11819 500 HDRWFLDRIAT 510 (556)
T ss_pred CCHHHHHHhCC
Confidence 9885 344443
No 464
>PLN03130 ABC transporter C family member; Provisional
Probab=98.65 E-value=2.5e-08 Score=127.50 Aligned_cols=148 Identities=19% Similarity=0.233 Sum_probs=91.7
Q ss_pred hhhcCCEEEEEcCCCChhhchhhH-----------HHhcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhc--
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM-- 140 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~-- 140 (727)
.|..|+.++|+|+|||||||++.. +++++.++.. ..-++.+.++|+.|..+. -++.+++.-..
T Consensus 1261 ~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~-GTIreNLd~~~~~ 1339 (1622)
T PLN03130 1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFS-GTVRFNLDPFNEH 1339 (1622)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCcccc-ccHHHHhCcCCCC
Confidence 578999999999999999998873 3344444332 122345678888876554 46776663110
Q ss_pred ----cccccceeceeeeecccc-ccCccc----cccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 141 ----DVTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 141 ----~~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
-......++...-..... ..++.+ .-+|+|++|++.++++++.++++||||| ++.|......+...+++
T Consensus 1340 tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~ 1419 (1622)
T PLN03130 1340 NDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1419 (1622)
T ss_pred CHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 001111111110000000 112222 3589999999999999999999999999 44444444444444444
Q ss_pred HHHhCCCCEEEEEcCcccH
Q 004850 210 VLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~ 228 (727)
. ..+.++|+++|-++.
T Consensus 1420 ~---~~~~TvI~IAHRL~t 1435 (1622)
T PLN03130 1420 E---FKSCTMLIIAHRLNT 1435 (1622)
T ss_pred H---CCCCEEEEEeCChHH
Confidence 3 457899999999864
No 465
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.64 E-value=2.4e-08 Score=127.54 Aligned_cols=148 Identities=19% Similarity=0.236 Sum_probs=91.4
Q ss_pred hhhcCCEEEEEcCCCChhhchhhH-----------HHhcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHh---
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEE--- 139 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~--- 139 (727)
.+..|+.++|+|+|||||||++.. +.+++.++.. ..-++.+.++|+.|..+. -++.+++.-.
T Consensus 1308 ~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~-gTIr~NLdp~~~~ 1386 (1522)
T TIGR00957 1308 TIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFS-GSLRMNLDPFSQY 1386 (1522)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccC-ccHHHHcCcccCC
Confidence 468999999999999999998873 3344444332 122345677888876554 3677666310
Q ss_pred cc---ccccceeceeeeeccc-cccCccc----cccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 140 MD---VTIGEEVGYSIRFEDC-SSARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 140 ~~---~~~~~~vg~~~~~~~~-~~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
.. ......+|........ ...++.+ ..+|+|++|++.++++++.++++||||| ++.|......+.+.+++
T Consensus 1387 sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~ 1466 (1522)
T TIGR00957 1387 SDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRT 1466 (1522)
T ss_pred CHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 00 0111112211000000 0112222 3489999999999999999999999999 44444433344444444
Q ss_pred HHHhCCCCEEEEEcCcccH
Q 004850 210 VLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~ 228 (727)
...+.++|+++|-++.
T Consensus 1467 ---~~~~~TvI~IAHRl~t 1482 (1522)
T TIGR00957 1467 ---QFEDCTVLTIAHRLNT 1482 (1522)
T ss_pred ---HcCCCEEEEEecCHHH
Confidence 3457899999998854
No 466
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=5.4e-08 Score=114.27 Aligned_cols=140 Identities=20% Similarity=0.165 Sum_probs=87.2
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCcc----ccCceEEEEcccch-h-hhccHHHHHHHhcc-------cc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPD----RRRKMMIACTQPRR-V-AAMSVSRRVAEEMD-------VT 143 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~----~~~~~~i~~t~p~~-~-~~~~v~~~v~~~~~-------~~ 143 (727)
.+..|+.++|+|||||||||++..+.=... ..... ....+.++++.+.. + ...++.+.+..... ..
T Consensus 334 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 412 (638)
T PRK10636 334 NLVPGSRIGLLGRNGAGKSTLIKLLAGELA-PVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRD 412 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHH
Confidence 467899999999999999999986542111 11100 01123344443211 1 11233333321000 00
Q ss_pred ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEE
Q 004850 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVV 221 (727)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil 221 (727)
+...+|.. ....+..+..+|+|+++|+.+++.++.++++||||| +|+|......+..+++.+ +..+|+
T Consensus 413 ~L~~~~l~-----~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-----~gtvi~ 482 (638)
T PRK10636 413 YLGGFGFQ-----GDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-----EGALVV 482 (638)
T ss_pred HHHHcCCC-----hhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----CCeEEE
Confidence 11111110 011345677899999999999999999999999999 888888888888887765 238999
Q ss_pred EcCccc
Q 004850 222 MSATLE 227 (727)
Q Consensus 222 ~SATl~ 227 (727)
+||..+
T Consensus 483 vSHd~~ 488 (638)
T PRK10636 483 VSHDRH 488 (638)
T ss_pred EeCCHH
Confidence 999875
No 467
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=2.6e-08 Score=109.08 Aligned_cols=152 Identities=16% Similarity=0.232 Sum_probs=91.5
Q ss_pred HhhhcCCEEEEEcCCCChhhchhhHHH----------hcCccCCC--ccccCceEEEEcccchhhhccHHHHHHHhc---
Q 004850 76 QVLKANQVIILVGETGSGKTTQIPQFV----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEM--- 140 (727)
Q Consensus 76 ~~i~~g~~vii~g~TGSGKTt~~~~~l----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~--- 140 (727)
-.|.+|+-|+|+|++||||||.+...+ ++|.++.. ....|..+-++.|...+-.-++..++.-..
T Consensus 373 f~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sa 452 (591)
T KOG0057|consen 373 FTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSA 452 (591)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCc
Confidence 356899999999999999999887432 33333322 111233333444555555566666663211
Q ss_pred ----cccccceeceeeeeccc-----cccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHH
Q 004850 141 ----DVTIGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVL 211 (727)
Q Consensus 141 ----~~~~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~ 211 (727)
-.+.....|...-+... .....+=..+|+|++|++.++++++.++.++++|||- -.+|.+--.++++.+.
T Consensus 453 s~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaT-S~LD~~TE~~i~~~i~ 531 (591)
T KOG0057|consen 453 SDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEAT-SALDSETEREILDMIM 531 (591)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcc-cccchhhHHHHHHHHH
Confidence 01111111211111111 1112233469999999999999999999999999964 2345555455555555
Q ss_pred HhCCCCEEEEEcCcccH
Q 004850 212 KNRPDLKLVVMSATLEA 228 (727)
Q Consensus 212 ~~~~~~~vil~SATl~~ 228 (727)
..-.++++|++-|.++.
T Consensus 532 ~~~~~rTvI~IvH~l~l 548 (591)
T KOG0057|consen 532 DVMSGRTVIMIVHRLDL 548 (591)
T ss_pred HhcCCCeEEEEEecchh
Confidence 54558899999998864
No 468
>PLN03232 ABC transporter C family member; Provisional
Probab=98.63 E-value=2.4e-08 Score=127.38 Aligned_cols=148 Identities=18% Similarity=0.263 Sum_probs=90.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhH-----------HHhcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (727)
.|..|+.++|+|+|||||||++.. +.+++.++.. ..-++.+.++|+.|..+. -++.+++.-...
T Consensus 1258 ~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~-gTIr~NL~~~~~~ 1336 (1495)
T PLN03232 1258 FVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFSEH 1336 (1495)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeC-ccHHHHcCCCCCC
Confidence 468999999999999999998873 3344443332 112345677888776554 467766631100
Q ss_pred -----ccccceeceeeeecccc-ccCccc----cccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 142 -----VTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 142 -----~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
......+|......... ..++.+ .-+|+|++||+.++++++.++++||||| ++.|......+.+.+++
T Consensus 1337 sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~ 1416 (1495)
T PLN03232 1337 NDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIRE 1416 (1495)
T ss_pred CHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 01111122110000000 012222 3589999999999999999999999999 45444444444444444
Q ss_pred HHHhCCCCEEEEEcCcccH
Q 004850 210 VLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~ 228 (727)
..++.++|+++|-++.
T Consensus 1417 ---~~~~~TvI~IAHRl~t 1432 (1495)
T PLN03232 1417 ---EFKSCTMLVIAHRLNT 1432 (1495)
T ss_pred ---HcCCCEEEEEeCCHHH
Confidence 3457899999999854
No 469
>PTZ00243 ABC transporter; Provisional
Probab=98.62 E-value=3.1e-08 Score=126.42 Aligned_cols=148 Identities=20% Similarity=0.258 Sum_probs=91.3
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHH-----------HhcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (727)
.|..|+.++|+|+|||||||++... ++++.++.. ...++.+.++|+.|..+. -++.+++.-...
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~-gTIreNIdp~~~~ 1410 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFD-GTVRQNVDPFLEA 1410 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCcccc-ccHHHHhCcccCC
Confidence 4679999999999999999988743 344444332 122345678888886554 477777732100
Q ss_pred -----ccccceeceeeeecccc-ccCccc----cccChHHHHHHHhccccccC-CeeEEeecc--CcChhhHHHHHHHHH
Q 004850 142 -----VTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLER-YKVIVLDEA--HERTLATDVLFGLLK 208 (727)
Q Consensus 142 -----~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~-~~~lIlDEa--her~~~~d~ll~ll~ 208 (727)
......+|......... ..++.+ .-+|+|++|++.++++++.+ +++|||||| ..|......+...++
T Consensus 1411 sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~ 1490 (1560)
T PTZ00243 1411 SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVM 1490 (1560)
T ss_pred CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 11112222211111100 112222 34999999999999999985 899999994 433333334444444
Q ss_pred HHHHhCCCCEEEEEcCcccH
Q 004850 209 EVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~~ 228 (727)
+ ...+.++|+++|-++.
T Consensus 1491 ~---~~~~~TvI~IAHRl~t 1507 (1560)
T PTZ00243 1491 S---AFSAYTVITIAHRLHT 1507 (1560)
T ss_pred H---HCCCCEEEEEeccHHH
Confidence 3 3457899999998854
No 470
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.62 E-value=6.8e-08 Score=113.64 Aligned_cols=145 Identities=21% Similarity=0.249 Sum_probs=89.7
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCc----cccCceEEEEcccc-hhhhccHHHHHHHhcc-cccc---ce
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETP----DRRRKMMIACTQPR-RVAAMSVSRRVAEEMD-VTIG---EE 147 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~----~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~-~~~~---~~ 147 (727)
.+..|+.++|+|+|||||||++..+.=. ...... .....+.++++.+. .....++.+.+..... .... ..
T Consensus 341 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~-~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~ 419 (635)
T PRK11147 341 QVQRGDKIALIGPNGCGKTTLLKLMLGQ-LQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRH 419 (635)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHH
Confidence 4689999999999999999998765411 101110 00112344454332 2334577776653211 0000 00
Q ss_pred e-ceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEc
Q 004850 148 V-GYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMS 223 (727)
Q Consensus 148 v-g~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~S 223 (727)
+ .+-..+.-. ...+..+..+|+|+++|+.+++.++.++++||||| .|+|....+.+..+++.+ +..+|++|
T Consensus 420 ~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-----~~tvi~vS 494 (635)
T PRK11147 420 VLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY-----QGTVLLVS 494 (635)
T ss_pred HHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-----CCeEEEEE
Confidence 0 000000000 11355677899999999999999999999999999 787777777676666553 34899999
Q ss_pred Cccc
Q 004850 224 ATLE 227 (727)
Q Consensus 224 ATl~ 227 (727)
|..+
T Consensus 495 Hd~~ 498 (635)
T PRK11147 495 HDRQ 498 (635)
T ss_pred CCHH
Confidence 9974
No 471
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.62 E-value=4e-07 Score=99.07 Aligned_cols=165 Identities=18% Similarity=0.175 Sum_probs=119.7
Q ss_pred CEEEEEcCcccHHHHHhhhcC--CCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHH
Q 004850 217 LKLVVMSATLEAEKFQGYFYG--APLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIED 294 (727)
Q Consensus 217 ~~vil~SATl~~~~~~~~f~~--~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~ 294 (727)
.|+|.+|||.....+..--+. ..+|.-.|-.-|. ..-.|...-++.++..+..... .+..+||-.-|++..+.
T Consensus 387 ~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLlDP~---ievRp~~~QvdDL~~EI~~r~~--~~eRvLVTtLTKkmAEd 461 (663)
T COG0556 387 PQTIYVSATPGDYELEQSGGNVVEQIIRPTGLLDPE---IEVRPTKGQVDDLLSEIRKRVA--KNERVLVTTLTKKMAED 461 (663)
T ss_pred CCEEEEECCCChHHHHhccCceeEEeecCCCCCCCc---eeeecCCCcHHHHHHHHHHHHh--cCCeEEEEeehHHHHHH
Confidence 589999999855443321111 1122222322221 1112333344455555444332 34689999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEE--cCCC
Q 004850 295 ACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVI--DPGF 372 (727)
Q Consensus 295 l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VI--d~g~ 372 (727)
+.++|... ++++-.+||++..-+|.+++...+.| ...|+|--|+.--|||+|.|..|- |.|.
T Consensus 462 LT~Yl~e~---------gikv~YlHSdidTlER~eIirdLR~G-------~~DvLVGINLLREGLDiPEVsLVAIlDADK 525 (663)
T COG0556 462 LTEYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLG-------EFDVLVGINLLREGLDLPEVSLVAILDADK 525 (663)
T ss_pred HHHHHHhc---------CceEEeeeccchHHHHHHHHHHHhcC-------CccEEEeehhhhccCCCcceeEEEEeecCc
Confidence 99999885 79999999999999999999999999 899999999999999999998876 5544
Q ss_pred ccceeeccccCccccccccccHhhHHhhhcccCCCCCceEEEecc
Q 004850 373 AKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYT 417 (727)
Q Consensus 373 ~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t 417 (727)
.-. .-|-.+.+|=+|||+|.-.|.++....
T Consensus 526 --eGF-------------LRse~SLIQtIGRAARN~~GkvIlYAD 555 (663)
T COG0556 526 --EGF-------------LRSERSLIQTIGRAARNVNGKVILYAD 555 (663)
T ss_pred --ccc-------------ccccchHHHHHHHHhhccCCeEEEEch
Confidence 211 567788999999999999999886544
No 472
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.62 E-value=6.4e-08 Score=109.23 Aligned_cols=154 Identities=18% Similarity=0.246 Sum_probs=95.1
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH----hcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccc---------cc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV----LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV---------TI 144 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l----l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~---------~~ 144 (727)
+..|+-+.|.|++||||||++..+- +....+.-+ ....+..+|++|--.+- ++.+.++..... .+
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P-~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~~~~d~~l~~v 493 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP-ADSALLFLPQRPYLPQG-TLREALCYPNAAPDFSDAELVAV 493 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC-CCCceEEecCCCCCCCc-cHHHHHhCCCCCCCCChHHHHHH
Confidence 4689999999999999999988431 111112222 12234567777754443 666666543322 22
Q ss_pred cceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcC
Q 004850 145 GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSA 224 (727)
Q Consensus 145 ~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SA 224 (727)
...||...-.+.......--.++|+|++||+..++.++.+|+++|||||- ..++.+....+...+..+.|+..+|-++|
T Consensus 494 L~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEAT-sALDe~~e~~l~q~l~~~lp~~tvISV~H 572 (604)
T COG4178 494 LHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT-SALDEETEDRLYQLLKEELPDATVISVGH 572 (604)
T ss_pred HHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecch-hccChHHHHHHHHHHHhhCCCCEEEEecc
Confidence 23344322112222222333479999999999999999999999999953 12333333333333444568999999999
Q ss_pred cccHHHHHhh
Q 004850 225 TLEAEKFQGY 234 (727)
Q Consensus 225 Tl~~~~~~~~ 234 (727)
.-....+.+.
T Consensus 573 r~tl~~~h~~ 582 (604)
T COG4178 573 RPTLWNFHSR 582 (604)
T ss_pred chhhHHHHhh
Confidence 8766555543
No 473
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.62 E-value=3.1e-08 Score=125.40 Aligned_cols=65 Identities=14% Similarity=0.236 Sum_probs=53.4
Q ss_pred cccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 163 VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 163 ~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
....+|+|++||+.++++++.+|++||||| +++|......+...++++.+. .+.++|++||.++.
T Consensus 576 ~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~-~g~TvIiIsHrls~ 642 (1466)
T PTZ00265 576 NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGN-ENRITIIIAHRLST 642 (1466)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhc-CCCEEEEEeCCHHH
Confidence 345699999999999999999999999999 566766677777777776442 26899999999864
No 474
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.61 E-value=2.9e-08 Score=118.18 Aligned_cols=148 Identities=18% Similarity=0.250 Sum_probs=91.2
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (727)
.+..|+.++|+|++||||||++.... +++.++.. ...++.+.+++++|... ..++.+++.-...
T Consensus 479 ~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf-~~ti~eNi~~~~~~ 557 (694)
T TIGR01846 479 DIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLF-SRSIRDNIALCNPG 557 (694)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeeh-hhhHHHHHhcCCCC
Confidence 36789999999999999999987432 22222221 11123455666665543 4577777753210
Q ss_pred c------cccceeceeeeeccc----c-ccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 142 V------TIGEEVGYSIRFEDC----S-SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 142 ~------~~~~~vg~~~~~~~~----~-~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
. .....+|........ . .....-..+|+|+++|+.++++++.+++++|+|| ++.|......+.+.++
T Consensus 558 ~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~ 637 (694)
T TIGR01846 558 APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMR 637 (694)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 0 001111111000000 0 0111224699999999999999999999999999 5556666666777766
Q ss_pred HHHHhCCCCEEEEEcCcccH
Q 004850 209 EVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~~ 228 (727)
++ .++.++|++||.++.
T Consensus 638 ~~---~~~~t~i~itH~~~~ 654 (694)
T TIGR01846 638 EI---CRGRTVIIIAHRLST 654 (694)
T ss_pred HH---hCCCEEEEEeCChHH
Confidence 65 247899999998854
No 475
>PLN03140 ABC transporter G family member; Provisional
Probab=98.60 E-value=8.9e-08 Score=120.90 Aligned_cols=145 Identities=14% Similarity=0.156 Sum_probs=98.0
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh-------------cCccCCCccccCceEEEEcccchhhhccHHHHHHHhccc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL-------------EGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll-------------~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (727)
.+..|+.++|.||+||||||++..+.= ++.+.......+.+.++++++......++.+.+......
T Consensus 902 ~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr 981 (1470)
T PLN03140 902 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLR 981 (1470)
T ss_pred EEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhC
Confidence 357899999999999999999874321 111110011122345666666666667887776432110
Q ss_pred ---------------cccceeceeeeeccccccCcc-----ccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 143 ---------------TIGEEVGYSIRFEDCSSARTV-----LKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 143 ---------------~~~~~vg~~~~~~~~~~~~~~-----i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
.+...+|.. . ..++. +..+|+|+++|+.++..++.+|+++++|| .++|....
T Consensus 982 ~~~~~~~~~~~~~v~~vl~~lgL~----~--~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a 1055 (1470)
T PLN03140 982 LPKEVSKEEKMMFVDEVMELVELD----N--LKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1055 (1470)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCh----h--HhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Confidence 011112211 1 11222 35799999999999999999999999999 78888888
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCcccHH
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLEAE 229 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~~~ 229 (727)
..++..++++... +..+|+.+|..+.+
T Consensus 1056 ~~v~~~L~~l~~~--g~tVI~t~Hq~~~~ 1082 (1470)
T PLN03140 1056 AIVMRTVRNTVDT--GRTVVCTIHQPSID 1082 (1470)
T ss_pred HHHHHHHHHHHHC--CCEEEEEeCCCCHH
Confidence 8899999998654 67899999998643
No 476
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.59 E-value=1.2e-07 Score=111.42 Aligned_cols=62 Identities=26% Similarity=0.357 Sum_probs=53.7
Q ss_pred CccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
+..+..+|+|+++|+.++++++.+|+++|||| +|+|......+..+++.+ ...+|++||...
T Consensus 151 ~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~-----~~tvlivsHd~~ 214 (635)
T PRK11147 151 DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF-----QGSIIFISHDRS 214 (635)
T ss_pred CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC-----CCEEEEEeCCHH
Confidence 45677899999999999999999999999999 888888888888887765 248999999874
No 477
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.59 E-value=5e-08 Score=124.36 Aligned_cols=148 Identities=22% Similarity=0.320 Sum_probs=92.7
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHh----
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEE---- 139 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~---- 139 (727)
.|..|+.++|+|+|||||||++...+ +++.++.. ...++.+.++|+.|..+. -++.+++.-.
T Consensus 1241 ~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~-GTIR~NLdp~~~~t 1319 (1490)
T TIGR01271 1241 SVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFS-GTFRKNLDPYEQWS 1319 (1490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCc-cCHHHHhCcccCCC
Confidence 46899999999999999999887432 23333322 112346778888887665 4777777311
Q ss_pred --ccccccceeceeeeeccc-cccCcccc----ccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 140 --MDVTIGEEVGYSIRFEDC-SSARTVLK----YLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 140 --~~~~~~~~vg~~~~~~~~-~~~~~~i~----~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
.-......+|........ ...++.+. -+|+|++|++.++++++.++++||||| ++.|......+...++.
T Consensus 1320 deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~- 1398 (1490)
T TIGR01271 1320 DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ- 1398 (1490)
T ss_pred HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHH-
Confidence 001112222221111111 01122222 489999999999999999999999999 45444444445555544
Q ss_pred HHhCCCCEEEEEcCcccH
Q 004850 211 LKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~~ 228 (727)
..++.++|+++|-++.
T Consensus 1399 --~~~~~TvI~IaHRl~t 1414 (1490)
T TIGR01271 1399 --SFSNCTVILSEHRVEA 1414 (1490)
T ss_pred --HcCCCEEEEEecCHHH
Confidence 3457899999998854
No 478
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.56 E-value=7.7e-08 Score=115.14 Aligned_cols=141 Identities=27% Similarity=0.378 Sum_probs=86.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHH-----------HhcCccCCCc---cccCceEEEEcccchhhhccHHHHHHHhccc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETP---DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (727)
.+..|+.++++||+||||||.+-+. .+++.++.+- .-++.+.+ +.|+-.+...++.++++-....
T Consensus 1012 ~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~l-VsQEP~LF~~TIrENI~YG~~~ 1090 (1228)
T KOG0055|consen 1012 SIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGL-VSQEPVLFNGTIRENIAYGSEE 1090 (1228)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcce-eccCchhhcccHHHHHhccCCC
Confidence 4689999999999999999977632 2333333321 11223444 4555556667888888654111
Q ss_pred -c---ccce--------------eceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHH---
Q 004850 143 -T---IGEE--------------VGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATD--- 201 (727)
Q Consensus 143 -~---~~~~--------------vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d--- 201 (727)
. +.+. -||..+ ...+=..+|+|++||..++++++.+|++|+||||- --+|++
T Consensus 1091 vs~~eIi~Aak~ANaH~FI~sLP~GyDT~------vGerG~QLSGGQKQRIAIARAilRnPkILLLDEAT-SALDseSEr 1163 (1228)
T KOG0055|consen 1091 VSEEEIIEAAKLANAHNFISSLPQGYDTR------VGERGVQLSGGQKQRIAIARAILRNPKILLLDEAT-SALDSESER 1163 (1228)
T ss_pred CCHHHHHHHHHHhhhHHHHhcCcCcccCc------cCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccc-hhhhhhhHH
Confidence 0 0000 022111 11222469999999999999999999999999964 123333
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
.+-+.|.+. +.+++.|++.|-+..
T Consensus 1164 vVQeALd~a---~~gRT~IvIAHRLST 1187 (1228)
T KOG0055|consen 1164 VVQEALDRA---MEGRTTIVIAHRLST 1187 (1228)
T ss_pred HHHHHHHHh---hcCCcEEEEecchhh
Confidence 233333333 447899999988743
No 479
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.56 E-value=1e-07 Score=120.60 Aligned_cols=145 Identities=17% Similarity=0.171 Sum_probs=97.4
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh--------------cCccCCCccccCceEEEEcccchhhhccHHHHHHHhccc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL--------------EGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll--------------~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (727)
.+..|+.++|+|||||||||++....- ++.+.. ....+.+.++++++......++.+.+......
T Consensus 785 ~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~-~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l 863 (1394)
T TIGR00956 785 WVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD-SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYL 863 (1394)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-hhhhcceeeecccccCCCCCCHHHHHHHHHHh
Confidence 357899999999999999999874321 111110 01123355666666556667887776432110
Q ss_pred ----------------cccceeceeeeeccccccCcccc----ccChHHHHHHHhccccccCCe-eEEeec--cCcChhh
Q 004850 143 ----------------TIGEEVGYSIRFEDCSSARTVLK----YLTDGMLLREAMTDPLLERYK-VIVLDE--AHERTLA 199 (727)
Q Consensus 143 ----------------~~~~~vg~~~~~~~~~~~~~~i~----~lT~G~l~r~~~~~~ll~~~~-~lIlDE--aher~~~ 199 (727)
.+.+.+|.. ...++.+. -+|+|+++|+.++.+++.+++ +|+||| +++|...
T Consensus 864 ~~~~~~~~~~~~~~v~~~l~~l~L~------~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~ 937 (1394)
T TIGR00956 864 RQPKSVSKSEKMEYVEEVIKLLEME------SYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQT 937 (1394)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCh------hhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHH
Confidence 011111211 11233333 599999999999999999996 999999 7888888
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCcccHHH
Q 004850 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEAEK 230 (727)
Q Consensus 200 ~d~ll~ll~~l~~~~~~~~vil~SATl~~~~ 230 (727)
...+...++++... +..+|+.+|..+...
T Consensus 938 ~~~i~~~L~~la~~--g~tvI~t~H~~~~~~ 966 (1394)
T TIGR00956 938 AWSICKLMRKLADH--GQAILCTIHQPSAIL 966 (1394)
T ss_pred HHHHHHHHHHHHHc--CCEEEEEecCCCHHH
Confidence 88899999998643 788999999987543
No 480
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.55 E-value=5.2e-08 Score=123.47 Aligned_cols=64 Identities=19% Similarity=0.324 Sum_probs=49.4
Q ss_pred cccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccHH
Q 004850 165 KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAE 229 (727)
Q Consensus 165 ~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~~ 229 (727)
..+|+|++||+.++++++.++++||||| +++|......+...+..+.. .+++++|+++|-+..-
T Consensus 1357 ~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~-~~~~TvIiIaHRlsti 1422 (1466)
T PTZ00265 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKD-KADKTIITIAHRIASI 1422 (1466)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhc-cCCCEEEEEechHHHH
Confidence 3599999999999999999999999999 45555555556666655432 2378999999998543
No 481
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=2.4e-07 Score=108.89 Aligned_cols=62 Identities=23% Similarity=0.255 Sum_probs=52.6
Q ss_pred CccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
+..+..+|+|+++|+.++++++.+|++|+||| +|+|......+..+++++ +..+|++||..+
T Consensus 144 ~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~-----~~tviivsHd~~ 207 (638)
T PRK10636 144 ERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY-----QGTLILISHDRD 207 (638)
T ss_pred cCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC-----CCeEEEEeCCHH
Confidence 45677899999999999999999999999999 888877777777776653 358999999985
No 482
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.54 E-value=1.2e-06 Score=82.50 Aligned_cols=105 Identities=16% Similarity=0.300 Sum_probs=70.8
Q ss_pred CccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccHH-HHHhhhcC
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAE-KFQGYFYG 237 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~~-~~~~~f~~ 237 (727)
+..+...|+|+.+|+-+++.+...|.++++|| -.++-.-..-++++++.+.... ++.+++++|++-+. .+++.+
T Consensus 146 DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l-~la~viVTHDl~VarLla~rl-- 222 (258)
T COG4107 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL-GLAVVIVTHDLAVARLLADRL-- 222 (258)
T ss_pred cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhc-CceEEEEechhHHHHHhhhcc--
Confidence 34556789999999999999999999999999 3444344455888888887765 88999999999654 334332
Q ss_pred CCeeeeCCC--ccceeeeeccCCcccHHHHHHHHH
Q 004850 238 APLMKVPGR--LHPVEIFYTQEPERDYLEAAIRTV 270 (727)
Q Consensus 238 ~p~i~v~g~--~~~v~~~y~~~~~~~~~~~~~~~l 270 (727)
.+--.|+ .....-..+..|...|...++..+
T Consensus 223 --mvmk~g~vve~GLTDrvLDDP~hPYTQLLVSsv 255 (258)
T COG4107 223 --MVMKQGQVVESGLTDRVLDDPHHPYTQLLVSSV 255 (258)
T ss_pred --eeecCCCEeccccccccccCCCCchHHHHHHHh
Confidence 1111222 122344556666666655555443
No 483
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.52 E-value=9.1e-08 Score=91.91 Aligned_cols=155 Identities=18% Similarity=0.261 Sum_probs=98.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhH-----------HHhcC-ccCCCcc----ccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEG-VDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~-~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
.+..|+.-+++||||+||||++-. +++++ .++.+.+ .+.+++--++.|..+...+|.+++--..
T Consensus 27 ~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~ 106 (249)
T COG4674 27 SVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELAL 106 (249)
T ss_pred EecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHh
Confidence 356899999999999999998752 23333 2232211 1223444577888888888888873221
Q ss_pred --cccccceeceeeeecc------------c-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHH
Q 004850 141 --DVTIGEEVGYSIRFED------------C-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (727)
Q Consensus 141 --~~~~~~~vg~~~~~~~------------~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (727)
...+........+.+. . ...+..--.+|.|+.|.+-+..-+.++|+++++|| |..-...+...
T Consensus 107 ~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~t 186 (249)
T COG4674 107 NRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKT 186 (249)
T ss_pred cCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHH
Confidence 1111111111111110 0 01122334689999999999999999999999999 66555566667
Q ss_pred HHHHHHHHHhCCCCEEEEEcCccc-HHHHHhh
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl~-~~~~~~~ 234 (727)
-++++.+... ..++++-|+|. +..++++
T Consensus 187 aeLl~~la~~---hsilVVEHDM~Fvr~~A~~ 215 (249)
T COG4674 187 AELLKSLAGK---HSILVVEHDMGFVREIADK 215 (249)
T ss_pred HHHHHHHhcC---ceEEEEeccHHHHHHhhhe
Confidence 7777777544 58999999996 4555543
No 484
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.50 E-value=2.3e-07 Score=88.04 Aligned_cols=145 Identities=19% Similarity=0.292 Sum_probs=87.7
Q ss_pred hhhcCCEEEEEcCCCChhhchhhH-----------HHhcCccCCC---ccccCceEEEEcccchhh--hccHHHHHHH--
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVA--AMSVSRRVAE-- 138 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~--~~~v~~~v~~-- 138 (727)
.+.+|+.++++|+|||||||+..- +++++..+.- ..+...+.++++.|.-.. -..+.+-+-.
T Consensus 35 tL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL 114 (267)
T COG4167 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPL 114 (267)
T ss_pred EecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchh
Confidence 467899999999999999998762 2333332211 112234556777664211 1111111100
Q ss_pred ---------hcc---ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeecc--CcChhhHHHHH
Q 004850 139 ---------EMD---VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEA--HERTLATDVLF 204 (727)
Q Consensus 139 ---------~~~---~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEa--her~~~~d~ll 204 (727)
.+. ......||.-. ...+-.+.-++.|+.+|+++++++..+|+++|.||| .+++.-.--++
T Consensus 115 ~l~T~~~~~~R~~~i~~TL~~VGL~P-----dhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~ 189 (267)
T COG4167 115 RLNTDLEPEQRRKQIFETLRMVGLLP-----DHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLI 189 (267)
T ss_pred hhcccCChHHHHHHHHHHHHHhccCc-----cccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHH
Confidence 011 11123344221 112446678999999999999999999999999995 33333333467
Q ss_pred HHHHHHHHhCCCCEEEEEcCccc
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~ 227 (727)
.++-++..+. +...|.++..+-
T Consensus 190 NL~LeLQek~-GiSyiYV~QhlG 211 (267)
T COG4167 190 NLMLELQEKQ-GISYIYVTQHIG 211 (267)
T ss_pred HHHHHHHHHh-CceEEEEechhh
Confidence 7777766655 888888887764
No 485
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.50 E-value=2e-07 Score=93.21 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=53.5
Q ss_pred CccccccChHHHHHHHhccccccCCeeEEeeccC--cChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHhh
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAH--ERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEah--er~~~~d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~~ 234 (727)
+..+...|.|+..|+..+-+.-.+|+++|+||+= -|..........+.++..+ +..+|++||.++ ...+++.
T Consensus 142 ~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~--~~tiv~VSHd~~~I~~~Cd~ 216 (249)
T COG1134 142 DQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK--NKTIVLVSHDLGAIKQYCDR 216 (249)
T ss_pred hCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhcCe
Confidence 5677789999999999999899999999999931 1334444455555555444 689999999996 4666654
No 486
>PLN03073 ABC transporter F family; Provisional
Probab=98.49 E-value=3.4e-07 Score=108.33 Aligned_cols=138 Identities=17% Similarity=0.160 Sum_probs=82.4
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCc----cccCceEEEEcccchhhhccHHHH----HHHhc-c------
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETP----DRRRKMMIACTQPRRVAAMSVSRR----VAEEM-D------ 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~----v~~~~-~------ 141 (727)
.+..|+.++|+|+|||||||++..+.=... .... .....+.++++.+. ...++... +.... +
T Consensus 531 ~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~-p~~G~I~~~~~~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~~~~~~~i 607 (718)
T PLN03073 531 GIDLDSRIAMVGPNGIGKSTILKLISGELQ-PSSGTVFRSAKVRMAVFSQHHV--DGLDLSSNPLLYMMRCFPGVPEQKL 607 (718)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCceEEECCceeEEEEecccc--ccCCcchhHHHHHHHhcCCCCHHHH
Confidence 467999999999999999999886541110 1110 01113444554431 11111111 11100 0
Q ss_pred ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEE
Q 004850 142 VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKL 219 (727)
Q Consensus 142 ~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~v 219 (727)
..+...+|.. .......+..+|+|+++|+.++++++.++++||||| +|+|....+.++..+... . ..+
T Consensus 608 ~~~L~~~gl~-----~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~----~-gtv 677 (718)
T PLN03073 608 RAHLGSFGVT-----GNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF----Q-GGV 677 (718)
T ss_pred HHHHHHCCCC-----hHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----C-CEE
Confidence 0111112211 001245677899999999999999999999999999 777766666665555442 2 389
Q ss_pred EEEcCccc
Q 004850 220 VVMSATLE 227 (727)
Q Consensus 220 il~SATl~ 227 (727)
|++||.++
T Consensus 678 IivSHd~~ 685 (718)
T PLN03073 678 LMVSHDEH 685 (718)
T ss_pred EEEECCHH
Confidence 99999985
No 487
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.49 E-value=2.1e-07 Score=93.51 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=51.1
Q ss_pred CccccccChHHHHH------HHhccccccCCeeEEeec--cCcChhhHH-HHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 161 RTVLKYLTDGMLLR------EAMTDPLLERYKVIVLDE--AHERTLATD-VLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 161 ~~~i~~lT~G~l~r------~~~~~~ll~~~~~lIlDE--aher~~~~d-~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
+..+..+|.|++++ +.++++++.+++++++|| ++++..... .+.++++++.+.. +.++|+.||..+.
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~-~~~iiiitH~~~~ 185 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQK-NFQLIVITHDEEL 185 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcc-CCEEEEEEecHHH
Confidence 44566899999996 567788899999999999 566666666 7778887764432 5789999998653
No 488
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.47 E-value=3.8e-08 Score=92.23 Aligned_cols=67 Identities=13% Similarity=0.189 Sum_probs=54.6
Q ss_pred CccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
...+..+|+|..++..+.+.+.-.|++++||| +.++..+...+.+++..+.+.. +.-++.++|+-+.
T Consensus 128 ~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q-~vAv~WiTHd~dq 196 (223)
T COG4619 128 TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQ-NVAVLWITHDKDQ 196 (223)
T ss_pred cchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhh-ceEEEEEecChHH
Confidence 45677899999999999999999999999999 4556677777888887776532 7889999998653
No 489
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.6e-07 Score=103.07 Aligned_cols=147 Identities=22% Similarity=0.315 Sum_probs=85.5
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCccc---cCceEEEEcccchhhhccHHHHHHH----
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDR---RRKMMIACTQPRRVAAMSVSRRVAE---- 138 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~~---~~~~~i~~t~p~~~~~~~v~~~v~~---- 138 (727)
.+.+|+.++|+|+|||||||++.... +++.++...+. ...+.++.+++ -+..-++.+++.-
T Consensus 360 ~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~-hlF~~Tlr~NL~lA~~~ 438 (573)
T COG4987 360 TLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRV-HLFSGTLRDNLRLANPD 438 (573)
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccch-HHHHHHHHHHHhhcCCC
Confidence 46899999999999999999987543 22222211110 11222233332 2233455555421
Q ss_pred ---hccccccceeceeeeecccc-ccCccc----cccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 139 ---EMDVTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 139 ---~~~~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
+--....+.||.....++.. ..++.+ .-+|+|+.+|..+++.+|.+..+++||| ..+|......+++++.
T Consensus 439 AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~ 518 (573)
T COG4987 439 ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLF 518 (573)
T ss_pred CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHH
Confidence 11112233444332222211 111222 2489999999999999999999999999 4445554444555554
Q ss_pred HHHHhCCCCEEEEEcCccc
Q 004850 209 EVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~ 227 (727)
+- -.+.+++++||-+-
T Consensus 519 ~~---~~~kTll~vTHrL~ 534 (573)
T COG4987 519 EH---AEGKTLLMVTHRLR 534 (573)
T ss_pred HH---hcCCeEEEEecccc
Confidence 43 33789999999984
No 490
>PLN03232 ABC transporter C family member; Provisional
Probab=98.44 E-value=4.2e-07 Score=116.25 Aligned_cols=148 Identities=15% Similarity=0.151 Sum_probs=86.7
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCccCCC--ccccCceEEEEcccchhhhccHHHHHHHhc--c----cccccee
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEM--D----VTIGEEV 148 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~--~----~~~~~~v 148 (727)
.+.+|+.++|+|++||||||++..++=.-..... ......+.+++++| -+..-++.+++.-.. . ..+...+
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p-~Lf~gTIreNI~fg~~~~~e~~~~vl~~~ 717 (1495)
T PLN03232 639 EIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVS-WIFNATVRENILFGSDFESERYWRAIDVT 717 (1495)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCcc-ccccccHHHHhhcCCccCHHHHHHHHHHh
Confidence 3678999999999999999998765422111110 01122344555554 444567888775211 0 1111112
Q ss_pred ceeeeeccccc-cCcc----ccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHH-HHHHHHHHhCCCCEEE
Q 004850 149 GYSIRFEDCSS-ARTV----LKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF-GLLKEVLKNRPDLKLV 220 (727)
Q Consensus 149 g~~~~~~~~~~-~~~~----i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll-~ll~~l~~~~~~~~vi 220 (727)
+....++.... .++. =.-+|+|+++|+.+++++++++++++||| ++.|......++ ..++.. .++.++|
T Consensus 718 ~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~---l~~kT~I 794 (1495)
T PLN03232 718 ALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE---LKGKTRV 794 (1495)
T ss_pred CCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh---hcCCEEE
Confidence 21111111111 0122 23599999999999999999999999999 454444333333 233332 2478999
Q ss_pred EEcCcccH
Q 004850 221 VMSATLEA 228 (727)
Q Consensus 221 l~SATl~~ 228 (727)
++||.+..
T Consensus 795 lvTH~~~~ 802 (1495)
T PLN03232 795 LVTNQLHF 802 (1495)
T ss_pred EEECChhh
Confidence 99998754
No 491
>PLN03140 ABC transporter G family member; Provisional
Probab=98.44 E-value=2.4e-07 Score=117.02 Aligned_cols=64 Identities=11% Similarity=0.173 Sum_probs=54.2
Q ss_pred ccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcc
Q 004850 162 TVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (727)
Q Consensus 162 ~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl 226 (727)
..+.-+|+|+++|+.++..++.+++++++|| .++|......+...++++.+.. +..+|+.+|..
T Consensus 332 ~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~-g~Tviis~Hqp 397 (1470)
T PLN03140 332 EMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLT-EATVLMSLLQP 397 (1470)
T ss_pred ccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhc-CCEEEEEecCC
Confidence 3456799999999999999999999999999 7888888888889998886543 66788888765
No 492
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.44 E-value=5.1e-07 Score=102.41 Aligned_cols=143 Identities=18% Similarity=0.192 Sum_probs=85.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCccCCC-ccccCceE-EEEcccchh--hhccHHHHHHHhccc----ccccee
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-PDRRRKMM-IACTQPRRV--AAMSVSRRVAEEMDV----TIGEEV 148 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-~~~~~~~~-i~~t~p~~~--~~~~v~~~v~~~~~~----~~~~~v 148 (727)
.+..|+-++|+||||+||||++..++=....... ......+. -.+.|.... ...++.+.+.+.... .+....
T Consensus 344 ~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L 423 (530)
T COG0488 344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYL 423 (530)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHH
Confidence 4678999999999999999999876422221111 01011221 223333311 333566666554411 111111
Q ss_pred ceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcc
Q 004850 149 GYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (727)
Q Consensus 149 g~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl 226 (727)
| ...|. .....+.+..+|+|++.|+.++..++.++.+||||| -|+|.-..+.+...|.. . .-.+|++||+-
T Consensus 424 ~-~f~F~-~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~----f-~Gtvl~VSHDr 496 (530)
T COG0488 424 G-RFGFT-GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD----F-EGTVLLVSHDR 496 (530)
T ss_pred H-HcCCC-hHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh----C-CCeEEEEeCCH
Confidence 1 00011 111256778899999999999999999999999999 67654444444444433 4 45899999984
No 493
>PLN03130 ABC transporter C family member; Provisional
Probab=98.43 E-value=4.8e-07 Score=115.93 Aligned_cols=148 Identities=14% Similarity=0.096 Sum_probs=86.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCccCC-C-ccccCceEEEEcccchhhhccHHHHHHHhc------ccccccee
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIE-T-PDRRRKMMIACTQPRRVAAMSVSRRVAEEM------DVTIGEEV 148 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~-~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~------~~~~~~~v 148 (727)
.+..|+.++|+|++||||||++..++=+-.... . -.....+.+++++|- +..-++.+++.-.. -..+...+
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~-LfngTIreNI~fg~~~d~e~y~~vl~a~ 717 (1622)
T PLN03130 639 DVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSW-IFNATVRDNILFGSPFDPERYERAIDVT 717 (1622)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccc-cCCCCHHHHHhCCCcccHHHHHHHHHHh
Confidence 367899999999999999999886543221111 0 001223445555554 44567887775211 11111222
Q ss_pred ceeeeeccccc-cCc----cccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHH-HHHHHHHHHhCCCCEEE
Q 004850 149 GYSIRFEDCSS-ART----VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL-FGLLKEVLKNRPDLKLV 220 (727)
Q Consensus 149 g~~~~~~~~~~-~~~----~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~l-l~ll~~l~~~~~~~~vi 220 (727)
+.....+.... .++ +-.-+|+|+++|+.++++++.+++++|||| ++.|......+ ...++... ++.++|
T Consensus 718 ~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l---~~kTvI 794 (1622)
T PLN03130 718 ALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL---RGKTRV 794 (1622)
T ss_pred CcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh---cCCEEE
Confidence 21111111110 112 223599999999999999999999999999 44443333323 23343332 378999
Q ss_pred EEcCcccH
Q 004850 221 VMSATLEA 228 (727)
Q Consensus 221 l~SATl~~ 228 (727)
++||.+..
T Consensus 795 lVTH~l~~ 802 (1622)
T PLN03130 795 LVTNQLHF 802 (1622)
T ss_pred EEECCHhH
Confidence 99999854
No 494
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.42 E-value=1.1e-05 Score=94.30 Aligned_cols=81 Identities=17% Similarity=0.100 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCC-C-HHHHhhhcCCCCCCCC
Q 004850 262 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTL-P-PAMQQKIFEPAPPPSK 339 (727)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l-~-~~~r~~~~~~~~~g~~ 339 (727)
+..+.+..+...|. ...+|||-+.+.+..+.+++.|.+. ++..-.|++.- . ..|-.-|-+.-.+|
T Consensus 409 K~~AI~~ei~~~~~--~grPVLIgT~SIe~SE~ls~~L~~~---------gi~h~vLNAk~~~~~~EA~IIA~AG~~G-- 475 (870)
T CHL00122 409 KWRAIADECLQMHQ--TGRPILIGTTTIEKSELLSQLLKEY---------RLPHQLLNAKPENVRRESEIVAQAGRKG-- 475 (870)
T ss_pred HHHHHHHHHHHHHh--cCCCEEEeeCCHHHHHHHHHHHHHc---------CCccceeeCCCccchhHHHHHHhcCCCC--
Confidence 44555666666554 4568999999999999999999874 56666677652 2 33333333333333
Q ss_pred CCCCCCcEEEEecCccccCcccC
Q 004850 340 EGGPPGRKIVVSTNIAETSLTID 362 (727)
Q Consensus 340 ~~~~~~~kvlvaTniAe~gitIp 362 (727)
.|.||||.|.||.||.
T Consensus 476 -------~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 476 -------SITIATNMAGRGTDII 491 (870)
T ss_pred -------cEEEeccccCCCcCee
Confidence 7999999999999884
No 495
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.41 E-value=4.1e-07 Score=105.80 Aligned_cols=147 Identities=20% Similarity=0.278 Sum_probs=94.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH--------------hcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV--------------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l--------------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (727)
.+..|+.++|.||+||||||++.... +++.........+....+.+........+|.+.+.-....
T Consensus 52 ~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~l 131 (613)
T KOG0061|consen 52 TAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALL 131 (613)
T ss_pred EEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHh
Confidence 45789999999999999999987432 2221111111111233444444456778888776321111
Q ss_pred ----------------cccceeceeeeeccccccCccc-----cccChHHHHHHHhccccccCCeeEEeec--cCcChhh
Q 004850 143 ----------------TIGEEVGYSIRFEDCSSARTVL-----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (727)
Q Consensus 143 ----------------~~~~~vg~~~~~~~~~~~~~~i-----~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~ 199 (727)
.+....|.. ...++.| .-+|+|++.|+.++-.++.+|.++++|| .++|+..
T Consensus 132 rlp~~~~~~~k~~~V~~vi~~LgL~------~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~s 205 (613)
T KOG0061|consen 132 RLPSSLSKEEKRERVEEVISELGLE------KCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFS 205 (613)
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCh------hhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhh
Confidence 111122211 1112233 4589999999999999999999999999 7888888
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCcccHHHH
Q 004850 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEAEKF 231 (727)
Q Consensus 200 ~d~ll~ll~~l~~~~~~~~vil~SATl~~~~~ 231 (727)
.-.+...|+++.+. ++.||+.=|-...+.|
T Consensus 206 A~~vv~~Lk~lA~~--grtVi~tIHQPss~lf 235 (613)
T KOG0061|consen 206 ALQVVQLLKRLARS--GRTVICTIHQPSSELF 235 (613)
T ss_pred HHHHHHHHHHHHhC--CCEEEEEEeCCcHHHH
Confidence 88999999998876 6666665555444444
No 496
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.41 E-value=1.1e-06 Score=86.08 Aligned_cols=145 Identities=15% Similarity=0.172 Sum_probs=75.8
Q ss_pred CchHHHHHHHHhhhc-------CCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHH
Q 004850 66 PVWQQKEEFLQVLKA-------NQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (727)
Q Consensus 66 p~~~~q~~ii~~i~~-------g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (727)
.+.++|.+++..+.. +..+++.++||||||..+..++..-.. ..+.++ |.....-+..+.+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-------~~l~~~---p~~~l~~Q~~~~~~~ 72 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-------KVLIVA---PNISLLEQWYDEFDD 72 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-------EEEEEE---SSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-------ceeEec---CHHHHHHHHHHHHHH
Confidence 467889888888873 689999999999999987765543321 122232 443333333333311
Q ss_pred hcccccc---ce-----e--------ceeeeeccccccCccccccChHHHHHHHhc------------cccccCCeeEEe
Q 004850 139 EMDVTIG---EE-----V--------GYSIRFEDCSSARTVLKYLTDGMLLREAMT------------DPLLERYKVIVL 190 (727)
Q Consensus 139 ~~~~~~~---~~-----v--------g~~~~~~~~~~~~~~i~~lT~G~l~r~~~~------------~~ll~~~~~lIl 190 (727)
....... .. . ...............+.+.|...+...... .......++||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~ 152 (184)
T PF04851_consen 73 FGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVII 152 (184)
T ss_dssp HSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEE
T ss_pred hhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEE
Confidence 1110000 00 0 000000001122445556666666654432 113567899999
Q ss_pred eccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcc
Q 004850 191 DEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (727)
Q Consensus 191 DEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl 226 (727)
||+|.-.... . .+.+.. .+...+|.||||.
T Consensus 153 DEaH~~~~~~-~----~~~i~~-~~~~~~l~lTATp 182 (184)
T PF04851_consen 153 DEAHHYPSDS-S----YREIIE-FKAAFILGLTATP 182 (184)
T ss_dssp ETGGCTHHHH-H----HHHHHH-SSCCEEEEEESS-
T ss_pred ehhhhcCCHH-H----HHHHHc-CCCCeEEEEEeCc
Confidence 9999633322 2 222222 4577899999996
No 497
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.41 E-value=4.1e-07 Score=88.68 Aligned_cols=155 Identities=17% Similarity=0.224 Sum_probs=87.3
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh-----------cCccCCC--c-cccCceEEEEcccchhhhccHHHHHHHhcc-c
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIET--P-DRRRKMMIACTQPRRVAAMSVSRRVAEEMD-V 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~--~-~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-~ 142 (727)
+..|++++|+||||+||||++....= ++.+... + ...+...+.|++......+++.+-+.-.+. .
T Consensus 24 ~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~ 103 (259)
T COG4559 24 LRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPH 103 (259)
T ss_pred ccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccc
Confidence 46899999999999999999885321 1111111 0 001112234444333333444443321110 0
Q ss_pred cccceeceee-------eeccc-cccCccccccChHHHHHHHhcccc------ccCCeeEEeec--cCcChhhHHHHHHH
Q 004850 143 TIGEEVGYSI-------RFEDC-SSARTVLKYLTDGMLLREAMTDPL------LERYKVIVLDE--AHERTLATDVLFGL 206 (727)
Q Consensus 143 ~~~~~vg~~~-------~~~~~-~~~~~~i~~lT~G~l~r~~~~~~l------l~~~~~lIlDE--aher~~~~d~ll~l 206 (727)
..+..-+... -.-++ .........+|+|..+|+-+++.+ ..+.++++||| +-+|.......+.+
T Consensus 104 ~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~l 183 (259)
T COG4559 104 RSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRL 183 (259)
T ss_pred ccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHH
Confidence 0000000000 00000 112344557999999999998875 23446999999 55555666678889
Q ss_pred HHHHHHhCCCCEEEEEcCccc-HHHHHhh
Q 004850 207 LKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 207 l~~l~~~~~~~~vil~SATl~-~~~~~~~ 234 (727)
.+++.+. +.-++.+=|++| +..|++.
T Consensus 184 aR~la~~--g~~V~~VLHDLNLAA~YaDr 210 (259)
T COG4559 184 ARQLARE--GGAVLAVLHDLNLAAQYADR 210 (259)
T ss_pred HHHHHhc--CCcEEEEEccchHHHHhhhe
Confidence 9998876 577888889997 4566654
No 498
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.40 E-value=7.1e-07 Score=114.35 Aligned_cols=149 Identities=10% Similarity=0.102 Sum_probs=88.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCccCCCcc--ccCceEEEEcccchhhhccHHHHHHHhcc------ccccceec
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPD--RRRKMMIACTQPRRVAAMSVSRRVAEEMD------VTIGEEVG 149 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~--~~~~~~i~~t~p~~~~~~~v~~~v~~~~~------~~~~~~vg 149 (727)
+..|+.++|+|++||||||++..++=.-. ..... -...+.+++++|- +...++.+++..... ..+...++
T Consensus 661 i~~G~~v~IvG~~GsGKSTLl~~l~g~~~-~~~G~i~~~g~i~yv~Q~~~-l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~ 738 (1522)
T TIGR00957 661 IPEGALVAVVGQVGCGKSSLLSALLAEMD-KVEGHVHMKGSVAYVPQQAW-IQNDSLRENILFGKALNEKYYQQVLEACA 738 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCc-cCCcEEEECCEEEEEcCCcc-ccCCcHHHHhhcCCccCHHHHHHHHHHhC
Confidence 57899999999999999999886542211 11100 0113445666654 344677777753110 00111111
Q ss_pred eeeeeccc-----cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEE
Q 004850 150 YSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVM 222 (727)
Q Consensus 150 ~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~ 222 (727)
....++.. ...+....-+|+|+++|+.++++++.++++++||| ++.|......++..+........+..+|++
T Consensus 739 l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlv 818 (1522)
T TIGR00957 739 LLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILV 818 (1522)
T ss_pred CHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEE
Confidence 10000000 11123345699999999999999999999999999 555555555555555432222236789999
Q ss_pred cCcccH
Q 004850 223 SATLEA 228 (727)
Q Consensus 223 SATl~~ 228 (727)
||.++.
T Consensus 819 TH~~~~ 824 (1522)
T TIGR00957 819 THGISY 824 (1522)
T ss_pred eCChhh
Confidence 998754
No 499
>PLN03073 ABC transporter F family; Provisional
Probab=98.38 E-value=6.4e-07 Score=105.97 Aligned_cols=62 Identities=24% Similarity=0.223 Sum_probs=53.8
Q ss_pred CccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
+..+..+|+|+++|+.++++++.+|++||||| +|+|......+..+++.+ +..+|++||..+
T Consensus 339 ~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-----~~tviivsHd~~ 402 (718)
T PLN03073 339 VKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW-----PKTFIVVSHARE 402 (718)
T ss_pred hCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc-----CCEEEEEECCHH
Confidence 34567899999999999999999999999999 888888888888887775 468999999975
No 500
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.38 E-value=4.2e-07 Score=115.13 Aligned_cols=148 Identities=14% Similarity=0.167 Sum_probs=94.2
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhc---------------CccCCC-c-cccCceEEEEcccchhhhccHHHHHHHh
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLE---------------GVDIET-P-DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~---------------~~~~~~-~-~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
.+..|+.++|+|++||||||++..+.-. +.+... . ...+.+..+++.+.....+++.+.+.-.
T Consensus 83 ~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~ 162 (1394)
T TIGR00956 83 LIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFA 162 (1394)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHH
Confidence 3579999999999999999998854311 100000 0 0112244555555555567777776422
Q ss_pred cccc---------------------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcC
Q 004850 140 MDVT---------------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHER 196 (727)
Q Consensus 140 ~~~~---------------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher 196 (727)
.... +...+|..... +....+..+..+|+|+++|+.++..++.+++++++|| .++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD 241 (1394)
T TIGR00956 163 ARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTR-NTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLD 241 (1394)
T ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccccc-CceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcC
Confidence 1100 01112211000 0000123456799999999999999999999999999 7888
Q ss_pred hhhHHHHHHHHHHHHHhCCCCEEEEEcCcc
Q 004850 197 TLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (727)
Q Consensus 197 ~~~~d~ll~ll~~l~~~~~~~~vil~SATl 226 (727)
......+...++++.+.. +..+|+.+|..
T Consensus 242 ~~~~~~i~~~L~~la~~~-g~tvii~~Hq~ 270 (1394)
T TIGR00956 242 SATALEFIRALKTSANIL-DTTPLVAIYQC 270 (1394)
T ss_pred HHHHHHHHHHHHHHHHhc-CCEEEEEecCC
Confidence 888888999999887643 67788888875
Done!